Citrus Sinensis ID: 036801

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MTCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQ
Secondary Structure (PSIPRED)
ccEEcccccEEEEEcccccccccccccccccccccccEEEEEccccccEEEEEcccccccccccccccccEEEEEccccccccccccccccccccccEEEEEccccccccccccccccccccccccHHHHHcccccccccccccccccccccEEEEEEccccccccccHHHHHccccccEEEEccccccccccccccccEEEEEEEcccccccEEcccccccccccccEEEEccccccccccccccccccccEEEEEccccccccccHHHccccccccEEEEEccccccEEEccccccccccccccccccccccEEEEccccccccccccccccccccccEEEEEEccccccccccccccccccEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccccHEEccccHcccccHHHccEEEEcccHcHHEEEEccccccccccEEEcccccEEEEcccHHHHHcccccccccccccccEEEEcccHHHHHHHHHccccccccccccHcEEEEccccccccccccccccccccEEEEEEcccccEEEcccHHHHHHHHcccEEEEccccccccHHHHHHHHHHHccccccccccccccccccccccccccHcEEcccHcHcccccccccccccEEEEEEccccHHHcccHHHHHHHHHHcEEEEccHHHHHEEEEcccccccccccccEEEcccccEEEEccccccccccccccccccccccEEEEEccccEEEEccccccccccEEEEEEccccccccccccccHHHcc
Coil and Loop (DISEMBL)
mtcgiqnlthltfyncmnlrclfssstvsnssfvrlQYIEIEKCHVLEELIVmdnqeedrnnivifprlqylkmydlekltsfstgdvhmlefpslkelwisrcpgfmvkfkrttndltkkvfPNLEELIVDAKYITTNKFLFSKDLLcklkcldveFVDELTTILSLDDFLQRFHTLKVLQIEgynywlpkekveNGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHlinlvpsstsfqnltTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIvladddddhdaAKDEVIAFSKLNELRLLNLESLRSFYsgycalnfpslerllvddctnmeifsrgelstpmlHKVQLNMWDEACWAWKEGLNTTIEQ
Flexible Loop (DISEMBL)
MTCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVmdnqeedrnniVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFkrttndltkkvfpNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQ
Low Complexity Region (SEG)
MTCGIQNLTHLTFYNCMNLRCLfssstvsnssfvRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNkflfskdllcklkcldVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLadddddhdaakdEVIAFSKlnelrllnleslrsFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQ
Disordered region (IsUnstruct)
**CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLN*****
Disordered Region (DISOPRED)
MTCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVL**************IAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNT****
Disordered Region (DISEMBL)
MTCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQ
Disordered Region (DISPRO)
***GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEAC**WKEGL******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	388	2.2.26 [Sep-21-2011]
Q9C8T9	898	Putative disease resistan	yes	no	0.311	0.134	0.304	1e-07
P60838	894	Probable disease resistan	no	no	0.324	0.140	0.296	2e-06
Q8RXS5	888	Probable disease resistan	no	no	0.283	0.123	0.272	2e-05
O64973	889	Disease resistance protei	no	no	0.337	0.147	0.280	3e-05
O64790	762	Probable disease resistan	no	no	0.317	0.161	0.287	6e-05

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 7/128 (5%)

Query: 224 MDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIE 283
           MD L    +  CH     +    SF +L  + +S+C  L+ +   + A  L RL    + 
Sbjct: 710 MDRLQEFTIEHCHTSEIKMGRICSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLH---VV 766

Query: 284 SCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLL 343
           S   + +I+  + +  HD  K  ++ F KLNEL L NL  L++ Y  +  L FP LE++ 
Sbjct: 767 SSNQLEDII--NKEKAHDGEKSGIVPFPKLNELHLYNLRELKNIY--WSPLPFPCLEKIN 822

Query: 344 VDDCTNME 351
           V  C N++
Sbjct: 823 VMGCPNLK 830

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 26/152 (17%)

Query: 216 LKHESSSI-----MDNL---VILRVSSCHHLI---------NLVPSSTSFQNLTTLEISH 258
           ++ ESS +     MDNL   +I +   C   I         N  P +    NL+T+ IS 
Sbjct: 695 VQEESSGVLTLPDMDNLNKVIIRKCGMCEIKIERKTLSLSSNRSPKTQFLHNLSTVHISS 754

Query: 259 CNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRL 318
           C+GLK++   L A  L  L         + +E+V    + +       +I F KL  LRL
Sbjct: 755 CDGLKDLTWLLFAPNLTSLE-------VLDSELVEGIINQEKAMTMSGIIPFQKLESLRL 807

Query: 319 LNLESLRSFYSGYCALNFPSLERLLVDDCTNM 350
            NL  LRS Y  +  L+FP L+ + +  C  +
Sbjct: 808 HNLAMLRSIY--WQPLSFPCLKTIHITKCPEL 837

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 11/121 (9%)

Query: 242 VPSSTSF-QNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDH 300
           +P++T+F  NL+ + +  C  L+++   + A  L  LR   + S + + E++     +  
Sbjct: 731 IPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLR---VISASDLKEVI-----NKE 782

Query: 301 DAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELST 360
            A +  +I F +L ELRL N++ L+  + G   L FP L+++LV+ C+ +        S 
Sbjct: 783 KAEQQNLIPFQELKELRLENVQMLKHIHRG--PLPFPCLQKILVNGCSELRKLPLNFTSV 840

Query: 361 P 361
           P
Sbjct: 841 P 841

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 26/157 (16%)

Query: 211 DMKYILKHESSSI-----MDNLVILRVSSCH------------HLINLVPSSTSFQNLTT 253
           D KY LK ES  +     M NL  L +  C                N  P++  F NL+ 
Sbjct: 691 DFKY-LKEESVRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSR 749

Query: 254 LEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKL 313
           + I+ C+GLK++   L A  L  L   ++     + +I+  +  ++H A    ++ F KL
Sbjct: 750 VFIAKCHGLKDLTWLLFAPNLTFL---EVGFSKEVEDIISEEKAEEHSAT---IVPFRKL 803

Query: 314 NELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNM 350
             L L  L  L+  Y+   AL+FP L+ + V+ C  +
Sbjct: 804 ETLHLFELRGLKRIYAK--ALHFPCLKVIHVEKCEKL 838

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2

 Score = 49.3 bits (116), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 243 PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDA 302
           P    F NL+ L +S C+ +K++   L A  LV L    IE    + EI+    + +   
Sbjct: 618 PKIPCFTNLSRLGLSKCHSIKDLTWILFAPNLVYLY---IEDSREVGEII----NKEKAT 670

Query: 303 AKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPM 362
               +  F KL  L L NL  L S Y  +  L+FP L  + V DC  +        S P+
Sbjct: 671 NLTSITPFLKLERLILYNLPKLESIY--WSPLHFPRLLIIHVLDCPKLRKLPLNATSVPL 728

Query: 363 LHKVQLNMWDEA 374
           + + Q+ M+   
Sbjct: 729 VEEFQIRMYPPG 740

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.935	0.214	0.336	1e-40
302143647	759	unnamed protein product [Vitis vinifera]	0.935	0.478	0.334	2e-38
147787802	1517	hypothetical protein VITISV_005047 [Viti	0.886	0.226	0.334	4e-38
255581680	1126	Disease resistance protein RPS2, putativ	0.953	0.328	0.323	4e-35
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.948	0.149	0.317	8e-35
302143659	922	unnamed protein product [Vitis vinifera]	0.943	0.396	0.313	2e-34
356522570	2300	PREDICTED: uncharacterized protein LOC10	0.951	0.160	0.297	2e-34
359488288	1340	PREDICTED: LOW QUALITY PROTEIN: probable	0.829	0.240	0.344	3e-34
147802546	1409	hypothetical protein VITISV_007222 [Viti	0.925	0.254	0.321	4e-34
359488108	1436	PREDICTED: disease resistance protein At	0.940	0.254	0.295	2e-33

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 140/416 (33%), Positives = 218/416 (52%), Gaps = 53/416 (12%)

Query: 6    QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVI 65
            QNL  +    C +L+ LF +S V +   V+L+ +++  C + EE++  DN+ E     V 
Sbjct: 1201 QNLKSIFIDKCQSLKNLFPASLVKD--LVQLEKLKLRSCGI-EEIVAKDNEAETAAKFV- 1256

Query: 66   FPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC----------PGFMVKFKRTT 115
            FP++  LK++ L +L SF  G  H  ++P LKEL +  C          P F  +    +
Sbjct: 1257 FPKVTSLKLFHLHQLRSFYPG-AHTSQWPLLKELIVRACDKVNVFASETPTFQRRHHEGS 1315

Query: 116  ND---------LTKKVFPNLEELIVDAKYITTN-KFLFSKDLLCKLKCLDVE-FVDELTT 164
             D         L +  FP LEELI+D    T   +  F  D   +L+CL+V  + D L  
Sbjct: 1316 FDMPILQPLFLLQQVGFPYLEELILDDNGNTEIWQEQFPMDSFPRLRCLNVRGYGDILVV 1375

Query: 165  ILSLDDFLQRFHTLK------------VLQIEGYNYWLPKEKVENGVEVIIREAYNCYDM 212
            I S    LQR H L+            + Q+EG +     +++    E+I+    +   +
Sbjct: 1376 IPSF--MLQRLHNLEKLDVRRCSSVKEIFQLEGLDEENQAQRLGRLREIILG---SLPAL 1430

Query: 213  KYILKHESSSIMD--NLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLI 270
             ++ K  S S +D  +L  L V SC+ LI+LVP S SFQNL TL++  C+ L+++++  +
Sbjct: 1431 THLWKENSKSGLDLQSLESLEVWSCNSLISLVPCSVSFQNLDTLDVWSCSSLRSLISPSV 1490

Query: 271  AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSG 330
            AK+LV+LR++KI    M+ E+V  +  +  D      IAF KL  + LL L +L SF SG
Sbjct: 1491 AKSLVKLRKLKIGGSHMMEEVVANEGGEVVDE-----IAFYKLQHMVLLCLPNLTSFNSG 1545

Query: 331  YCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTI 386
                +FPSLE ++V++C  M+IFS   ++TP L +V++   DE  W W   LNTTI
Sbjct: 1546 GYIFSFPSLEHMVVEECPKMKIFSPSFVTTPKLERVEVAD-DE--WHWHNDLNTTI 1598

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera]

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 139/416 (33%), Positives = 216/416 (51%), Gaps = 53/416 (12%)

Query: 6   QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVI 65
           QNL  +    C +L+ LF +S V +   V+L+ +E+  C + EE++  DN+ E     V 
Sbjct: 338 QNLKSIFIDKCQSLKNLFPASLVKD--LVQLEKLELRSCGI-EEIVAKDNEAETAAKFV- 393

Query: 66  FPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC----------PGFMVKFKRTT 115
           FP++  L + +L +L SF  G  H  ++P LKEL +  C          P F  +    +
Sbjct: 394 FPKVTSLILVNLHQLRSFYPG-AHTSQWPLLKELIVRACDKVNVFASETPTFQRRHHEGS 452

Query: 116 ND---------LTKKVFPNLEELIV-DAKYITTNKFLFSKDLLCKLKCLDV-EFVDELTT 164
            D         L +   P LEELI+ D       +  F  D   +L+ L V  ++D L  
Sbjct: 453 FDMPSLQPLFLLQQVALPYLEELILNDNGNTEIWQEQFPMDSFPRLRYLKVYGYIDILVV 512

Query: 165 ILSLDDFLQRFHTLK------------VLQIEGYNYWLPKEKVENGVEVIIREAYNCYDM 212
           I S    LQR H L+            + Q+EG +     +++    E+ +R+      +
Sbjct: 513 IPSF--MLQRSHNLEKLNVRRCSSVKEIFQLEGLDEENQAQRLGRLREIWLRD---LPAL 567

Query: 213 KYILKHESSSIMD--NLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLI 270
            ++ K  S SI+D  +L  L V +C  LI+LVP S SFQNL TL++  C+ L+++++  +
Sbjct: 568 THLWKENSKSILDLQSLESLEVWNCDSLISLVPCSVSFQNLDTLDVWSCSNLRSLISPSV 627

Query: 271 AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSG 330
           AK+LV+LR++KI    M+ E+V  +  +    A DE IAF KL  + LL L +L SF SG
Sbjct: 628 AKSLVKLRKLKIGGLHMMEEVVANEGGE----AVDE-IAFYKLQHMVLLCLPNLTSFNSG 682

Query: 331 YCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTI 386
               +FPSLE ++V++C  M+IFS   ++TP L +V++   DE  W W   LNTTI
Sbjct: 683 GYIFSFPSLEHMVVEECPKMKIFSPSLVTTPKLERVEVAD-DE--WHWHNDLNTTI 735

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787802|emb|CAN71755.1| hypothetical protein VITISV_005047 [Vitis vinifera]

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 135/403 (33%), Positives = 209/403 (51%), Gaps = 59/403 (14%)

Query: 6    QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVI 65
            QNL  +T   C +L+ LF +S V +   V+LQ + +  C + EE++  DN   D     +
Sbjct: 1055 QNLQSITIDECQSLKNLFPASLVRD--LVQLQELHVLCCGI-EEIVAKDNGV-DTQATFV 1110

Query: 66   FPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC----------PGFMVKFKRTT 115
            FP++  L++  L +L SF  G  H   +PSLK+L +  C          P F  +     
Sbjct: 1111 FPKVTSLELSYLHQLRSFYPG-AHPSWWPSLKQLTVRECYKVNVFAFENPTFRQRHHEGN 1169

Query: 116  NDLTKKV-----FPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEF-VDELTTILSLD 169
             D+   +     FPNLEEL +D    T              +    +F VD    +  LD
Sbjct: 1170 LDMPLSLLQPVEFPNLEELTLDHNKDT--------------EIWPEQFPVDSFPRLRVLD 1215

Query: 170  DFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVI--IREAYNC--YDMKYILKHESSSIMD 225
            D +Q F   +V Q+EG +        EN  + +  +RE + C   ++ ++ K  S   +D
Sbjct: 1216 DVIQ-FK--EVFQLEGLDN-------ENQAKRLGRLREIWLCDLPELTHLWKENSKPGLD 1265

Query: 226  --NLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIE 283
              +L  L V +C  LINLVPSS SFQNL TL++  C  L+++++  +AK+LV+L+ +KI 
Sbjct: 1266 LLSLKSLEVRNCVRLINLVPSSASFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIG 1325

Query: 284  SCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLL 343
               M+ E+V  ++ +    A DE IAF KL  + L  L +L SF SG    +FPSLE ++
Sbjct: 1326 GSHMMEEVVANEEGE----AADE-IAFCKLQHMALKCLSNLTSFSSGGYIFSFPSLEHMV 1380

Query: 344  VDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTI 386
            +  C  M+IFS G ++TP L ++++   DE  W W++ LNTTI
Sbjct: 1381 LKKCPKMKIFSPGLVTTPRLERIKVGD-DE--WHWQDDLNTTI 1420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581680|ref|XP_002531643.1| Disease resistance protein RPS2, putative [Ricinus communis] gi|223528728|gb|EEF30739.1| Disease resistance protein RPS2, putative [Ricinus communis]

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 132/408 (32%), Positives = 213/408 (52%), Gaps = 38/408 (9%)

Query: 6    QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVI 65
            +NL  L  ++C  LR +F+ S       V+LQ +E++ C V+ E+I      E+ N  V+
Sbjct: 719  KNLKILKVHSCSKLRYVFTPSMCLG--LVQLQELEVKSCDVMAEIINEGLAMEETNKEVL 776

Query: 66   FPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCP-GFMVKF-----KRTTNDLT 119
            FP L  + +  L +L +FS+G   +++ PSLKE+ I  CP  F   F        T+ + 
Sbjct: 777  FPLLNSIILESLPRLINFSSGS-SVVQCPSLKEIRIVDCPTAFTCTFLGEAEANATHGII 835

Query: 120  KK--VFPNLEELIV----DAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTIL------- 166
            +   VFPNLEEL +    + K I +++     D   K+K L +E  ++L  I        
Sbjct: 836  EPEVVFPNLEELQILNMDNLKMIWSSQL--QSDSFGKVKVLKMEQSEKLLKIYPSGMLRS 893

Query: 167  --SLDDFL-QRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSI 223
              +L+D + ++  TL+V+  +       KEKV + +  ++ E  +  ++K++   +   +
Sbjct: 894  LRNLEDLIIKKCSTLEVV-FDLKEVTNIKEKVASQLRKLVME--DLPNLKHVWNEDRLGL 950

Query: 224  M--DNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMK 281
            +  D L  + VS C  LI L PSS  FQ+LTTL++  CN L++++    AK+L++L EM 
Sbjct: 951  VSFDKLSSVYVSQCDSLITLAPSSACFQSLTTLDLVKCNKLESLVASSTAKSLIQLTEMS 1010

Query: 282  IESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLER 341
            I+ C  + EI+  + D+      +E I FS+L  L+L  L SL SF S      FP L +
Sbjct: 1011 IKECDGMKEILTNEGDE-----PNEEIIFSRLRSLKLQCLPSLLSFCSSVHCFKFPFLTQ 1065

Query: 342  LLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEA-CWAWKEGLNTTIEQ 388
            ++V  C  M++FSRG + TP L  VQ    D+     W   LN TI+Q
Sbjct: 1066 VIVRQCPKMQVFSRGSVITPKLQSVQQLTEDKTDKERWSGNLNATIQQ 1113

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 131/412 (31%), Positives = 206/412 (50%), Gaps = 44/412 (10%)

Query: 7    NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIF 66
            NL  L+  NC +L+ LF +S     S  +L+ + I  C  L+E++  D  E       +F
Sbjct: 1162 NLRSLSAENCPSLKNLFPASIAK--SLSQLEDLSIVNCG-LQEIVAKDRVEATPR--FVF 1216

Query: 67   PRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFM------------------ 108
            P+L+ +K++ LE++ +F  G  H+L+ P L++L I  C                      
Sbjct: 1217 PQLKSMKLWILEEVKNFYPGR-HILDCPKLEKLTIHDCDNLELFTLESQCLQVGRGENQV 1275

Query: 109  -VKFKRTTNDLTKKVFPNLEELIVDAK-YITTNKFLFSKDLLCKLKCLDVEFVDELTTIL 166
             V+F++     T+ V  +L+ L +  K  +   +      L  KL+ LD++   + ++  
Sbjct: 1276 DVEFQQPLFSFTQ-VVSHLKSLSLSNKETMMIRQAQLPASLFHKLERLDLQCFHDRSSYF 1334

Query: 167  SLDDFLQRFHTLKVLQIEGYN----YWLPKEKVENGVEVIIREAY----NCYDMKYILKH 218
              D  LQRF  ++ L +   N    +  P    +N V ++    +    +  D++ I   
Sbjct: 1335 PFD-LLQRFQNVETLLLTCSNVEDLFPYPLVGEDNNVRILSNLRHLTLNSLRDIRRIWNQ 1393

Query: 219  E--SSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVR 276
            E   +  + NL  L V  C  LINL PSS +F+NL +LE+  CNGL ++LT   AK+LV+
Sbjct: 1394 ECQPNQSLQNLETLEVMYCKKLINLAPSSATFKNLASLEVHECNGLVSLLTSTTAKSLVQ 1453

Query: 277  LREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNF 336
            L EMK+ +C M+ EIV A++ D+ ++     I FSKL  LRL +L  L +  S  C + F
Sbjct: 1454 LGEMKVSNCKMLREIV-ANEGDEMESE----ITFSKLESLRLDDLTRLTTVCSVNCRVKF 1508

Query: 337  PSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQ 388
            PSLE L+V  C  ME FS G ++ P L KV L    +  W     LNTT +Q
Sbjct: 1509 PSLEELIVTACPRMEFFSHGIITAPKLEKVSLTKEGDK-WRSVGDLNTTTQQ 1559

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143659|emb|CBI22412.3| unnamed protein product [Vitis vinifera]

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/412 (31%), Positives = 202/412 (49%), Gaps = 46/412 (11%)

Query: 8   LTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQE-----EDRNN 62
           L  +   +C  L  +F S  +       LQ++   +C  LE +  ++            N
Sbjct: 513 LEKVVVASCGQLLNIFPSCMLKR--LQSLQFLRAMECSSLEAVFDVEGTNVNVDCSSLGN 570

Query: 63  IVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC----------PGFMVKFK 112
             +FP++  L + +L +L SF  G  H  ++P L+EL +S C          P F  +  
Sbjct: 571 TNVFPKITCLDLRNLPQLRSFYPG-AHTSQWPLLEELRVSECYKLDVFAFETPTFQQRHG 629

Query: 113 RTTND-----LTKKVFPNLEEL-IVDAKYITTNKFLFSKDLLCKLKCLDV-EFVDELTTI 165
               D     L    FPNLEEL + D +        F  D   +L+ L V ++ D L  I
Sbjct: 630 EGNLDMPLFFLPHVAFPNLEELRLGDNRDTEIWPEQFPVDSFPRLRVLHVHDYRDILVVI 689

Query: 166 LSLDDFLQRFHTLKVLQIEGYN-----YWLPKEKVENGVEVIIR----EAYNCYDMKYIL 216
            S    LQR H L+VL++   +     + L     EN  + + R    E ++   +  + 
Sbjct: 690 PSF--MLQRLHNLEVLKVGSCSSVKEVFQLEGLDEENQAKRLGRLREIELHDLPGLTRLW 747

Query: 217 KHESSSIMD--NLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTL 274
           K  S   +D  +L  L V +C  LINLVPSS SFQNL TL++  C  L+++++  +AK+L
Sbjct: 748 KENSEPGLDLQSLESLEVWNCGSLINLVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSL 807

Query: 275 VRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCAL 334
           V+L+ +KI    M+ E+V  +  +    A DE I F KL  + LL L +L SF SG    
Sbjct: 808 VKLKTLKIGRSDMMEEVVANEGGE----ATDE-ITFYKLQHMELLYLPNLTSFSSGGYIF 862

Query: 335 NFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTI 386
           +FPSLE++LV +C  M++FS   ++ P L ++++   DE  W W++ LNT I
Sbjct: 863 SFPSLEQMLVKECPKMKMFSPSLVTPPRLKRIKVG--DEE-WPWQDDLNTAI 911

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522570|ref|XP_003529919.1| PREDICTED: uncharacterized protein LOC100813151 [Glycine max]

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 197/400 (49%), Gaps = 31/400 (7%)

Query: 6    QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVI 65
            + L  +  ++C  LR +F +S   +    +L+Y+ +  CH + E++  ++  E     ++
Sbjct: 1166 KKLQSIHVFSCHRLRNVFPASVAKDVP--KLEYMSVSVCHGIVEIVACEDGSETNTEQLV 1223

Query: 66   FPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF---KRTTND----- 117
            FP L  +K+ +L  +  F  G  H +E P LK+L +  C   +  F   +R+  +     
Sbjct: 1224 FPELTDMKLCNLSSIQHFYRGR-HPIECPKLKKLEVRECNKKLKTFGTGERSNEEDEAVM 1282

Query: 118  LTKKVFPNLEELIVDAKYITTNKFLFS---KDLLCKLKCLDVEFVDELTTILSLDDFLQR 174
              +K+FPNLE L++D  +    K+L S   K  + +LK L +  V++   +  +   L R
Sbjct: 1283 SAEKIFPNLEFLVID--FDEAQKWLLSNTVKHPMHRLKELRLSKVNDGERLCQI---LYR 1337

Query: 175  FHTLKVLQIEGYNYWLPKEKVEN--GVEVIIREAYNCYDMKYILKHESSSIMDNLVILRV 232
               L+ L +    + L KE  E+  G+ + ++E    +     +  E   ++  L +L +
Sbjct: 1338 MPNLEKLYLSSAKHLL-KESSESRLGIVLQLKELGLYWSEIKDIGFEREPVLQRLELLSL 1396

Query: 233  SSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIV 292
              CH LI L P S S   LT LE+ +C GL+N++    AK+LV+L+ MKI  C  + EIV
Sbjct: 1397 YQCHKLIYLAPPSVSLAYLTNLEVWYCYGLRNLMASSTAKSLVQLKSMKIRGCNELEEIV 1456

Query: 293  LADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYS-GYCALNFPSLERLLVDDCTNME 351
                  D    ++E I F KL  + L  L+ L+ F S   C   FPSLE L+V +C  ME
Sbjct: 1457 -----SDEGNEEEEQIVFGKLITIELEGLKKLKRFCSYKKCEFKFPSLEVLIVRECPWME 1511

Query: 352  IFSRGELSTPMLHKV---QLNMWDEACWAWKEGLNTTIEQ 388
             F+ G    P L  +        +EA W W+  LN TI++
Sbjct: 1512 RFTEGGARAPKLQNIVSANEEGKEEAKWQWEADLNATIQK 1551

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera]

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 140/406 (34%), Positives = 203/406 (50%), Gaps = 84/406 (20%)

Query: 1    MTCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDR 60
            ++    NL  L   NCM+L  +F SS     S   L+ +++E C+ LEE+          
Sbjct: 926  LSLSFGNLRSLMMQNCMSLLKVFPSSLFQ--SLQNLEVLKVENCNQLEEI---------- 973

Query: 61   NNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTK 120
                          +DLE L +   G V +L  P L+E+ ++ C                
Sbjct: 974  --------------FDLEGL-NVDGGHVGLL--PKLEEMCLTGC---------------- 1000

Query: 121  KVFPNLEELIVDA-KYITTNKFLFSKDLLCKLKCLDV-EFVDELTTILSLDDFLQRFHTL 178
               P LEELI+D  + I   +  F  +  C+L+ L + E+ D L  I S    LQR HTL
Sbjct: 1001 --IP-LEELILDGSRIIEIWQEQFPVESFCRLRVLSICEYRDILVVIPS--SMLQRLHTL 1055

Query: 179  K------------VLQIEGYNYWLPKEKVENGVEVIIR----EAYNCYDMKYILKHES-- 220
            +            V+Q+EG    L  E  EN    + R    E  +  ++KY+ K  S  
Sbjct: 1056 EKLTVRSCGSVKEVVQLEG----LVDE--ENHFRALARLRELELNDLPELKYLWKENSNV 1109

Query: 221  SSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREM 280
                 NL IL++  C +L+NLVPSS SF NL +L+IS+C  L N+L  LIAK+LV+ +  
Sbjct: 1110 GPHFQNLEILKIWDCDNLMNLVPSSVSFHNLASLDISYCCSLINLLPPLIAKSLVQHKIF 1169

Query: 281  KIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLE 340
            KI    M+ E+V  + ++    A DE I F KL E+ L  L +L SF SG  +L+FP LE
Sbjct: 1170 KIGRSDMMKEVVANEGEN----AGDE-ITFCKLEEIELCVLPNLTSFCSGVYSLSFPVLE 1224

Query: 341  RLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTI 386
            R++V++C  M+IFS+G L TP L +V++    E    WK+ LNTTI
Sbjct: 1225 RVVVEECPKMKIFSQGLLVTPRLDRVEVGNNKE---HWKDDLNTTI 1267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802546|emb|CAN77665.1| hypothetical protein VITISV_007222 [Vitis vinifera]

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 135/420 (32%), Positives = 220/420 (52%), Gaps = 61/420 (14%)

Query: 6    QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVI 65
            QNL  +    C +L+ LF +S V +   V+LQ +++  C +  E+IV  +         +
Sbjct: 988  QNLKSVMIDQCQSLKNLFPASLVRD--LVQLQELQVWSCGI--EVIVAKDNGVKTAAKFV 1043

Query: 66   FPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGF-MVKFKRTTND------- 117
            FP++  L++  L +L SF  G  H  ++P LKEL +  CP   +  F+  T         
Sbjct: 1044 FPKVTSLRLSYLRQLRSFFPG-AHTSQWPLLKELKVHECPEVDLFAFETPTFQQIHHMGN 1102

Query: 118  ----------LTKKV-FPNLEELIVDAKYITTN-KFLFSKDLLCKLKCLDV-EFVDELTT 164
                      L ++V FPNLEEL +D    T   +  F  +  C+L+ L+V E+ D L  
Sbjct: 1103 LDMLIHQPLFLVQQVAFPNLEELTLDYNNATEIWQEQFPVNSFCRLRVLNVCEYGDILVV 1162

Query: 165  ILSLDDFLQRFHTLK------------VLQIEGYNYWLPKEKVENGVEVI--IREAY--N 208
            I S    LQR H L+            + Q+EG++        EN  +++  +RE +  +
Sbjct: 1163 IPSF--MLQRLHNLEKLNVKRCSSVKEIFQLEGHDE-------ENQAKMLGRLREIWLRD 1213

Query: 209  CYDMKYILKHESSSIMD--NLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVL 266
               + ++ K  S   +D  +L  L V +C  LINL P S SFQNL +L++  C  L++++
Sbjct: 1214 LPGLIHLWKENSKPGLDLQSLESLEVWNCDSLINLAPCSVSFQNLDSLDVWSCGSLRSLI 1273

Query: 267  TFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRS 326
            + L+AK+LV+L+++KI    M+  +V    +++     DE++ F KL  + LL   +L S
Sbjct: 1274 SPLVAKSLVKLKKLKIGGSHMMEVVV----ENEGGEGADEIV-FCKLQHIVLLCFPNLTS 1328

Query: 327  FYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTI 386
            F SG    +FPSLE ++V++C  M+IFS G ++TP L +V++   DE  W W++ LNTTI
Sbjct: 1329 FSSGGYIFSFPSLEHMVVEECPKMKIFSSGPITTPRLERVEVAD-DE--WHWQDDLNTTI 1385

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488108|ref|XP_003633701.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 210/467 (44%), Gaps = 102/467 (21%)

Query: 7    NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIF 66
            NL  L    CM+L  LF  S + N     LQ + +E C  LE++  ++    D  ++ + 
Sbjct: 947  NLRSLNLKKCMSLLKLFPPSLLQN-----LQELTVENCDKLEQVFDLEELNVDDGHVGLL 1001

Query: 67   PRLQYLKMYDLEKL-----------------------------------------TSFST 85
            P+L  L++ DL KL                                         TSF +
Sbjct: 1002 PKLGKLRLIDLPKLRHICNCGSSRNHFPSSMASAPVGNIIFPKLFYISLGFLPNLTSFVS 1061

Query: 86   GDVHMLE------------------FPSLKELWISRC----------PGFMVKFKRTTND 117
               H L+                  +P L+EL +S C          P F  +      D
Sbjct: 1062 PGYHSLQRLHHADLDTPFPVLFDERWPLLEELRVSECYKLDVFAFETPTFQQRHGEGNLD 1121

Query: 118  -----LTKKVFPNLEEL-IVDAKYITTNKFLFSKDLLCKLKCLDV-EFVDELTTILSLDD 170
                 L    FPNLEEL + D +        F  D   +L+ L V ++ D L  I S   
Sbjct: 1122 MPLFFLPHVAFPNLEELRLGDNRDTEIWPEQFPVDSFPRLRVLHVHDYRDILVVIPSF-- 1179

Query: 171  FLQRFHTLKVLQIEGYN-----YWLPKEKVENGVEVIIR----EAYNCYDMKYILKHESS 221
             LQR H L+VL++   +     + L     EN  + + R    E ++   +  + K  S 
Sbjct: 1180 MLQRLHNLEVLKVGSCSSVKEVFQLEGLDEENQAKRLGRLREIELHDLPGLTRLWKENSE 1239

Query: 222  SIMD--NLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLRE 279
              +D  +L  L V +C  LINLVPSS SFQNL TL++  C  L+++++  +AK+LV+L+ 
Sbjct: 1240 PGLDLQSLESLEVWNCGSLINLVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKT 1299

Query: 280  MKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSL 339
            +KI    M+ E+V  +  +    A DE I F KL  + LL L +L SF SG    +FPSL
Sbjct: 1300 LKIGRSDMMEEVVANEGGE----ATDE-ITFYKLQHMELLYLPNLTSFSSGGYIFSFPSL 1354

Query: 340  ERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTI 386
            E++LV +C  M++FS   ++ P L ++++   DE  W W++ LNT I
Sbjct: 1355 EQMLVKECPKMKMFSPSLVTPPRLKRIKVG--DEE-WPWQDDLNTAI 1398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.195	0.053	0.315	0.00011

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
 Identities = 24/76 (31%), Positives = 41/76 (53%)

Query:    36 LQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPS 95
             L+Y+ IEK ++L+++ +     E+ +  V F  LQ LK Y + +   +   ++    FP 
Sbjct:   809 LKYLSIEKFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGIFPC 868

Query:    96 LKELWISRCPGFMVKF 111
             L++L I RCP    KF
Sbjct:   869 LQKLIIQRCPSLRKKF 884

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_329000001 cc-nbs-lrr resistance protein (2359 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	388
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.76
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.63
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.42
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.42
KOG4341	483	consensus F-box protein containing LRR [General fu	99.41
KOG4341	483	consensus F-box protein containing LRR [General fu	99.28
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.25
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.24
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.23
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.23
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.21
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.16
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.15
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.04
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.99
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.86
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.69
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.67
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.61
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.54
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.48
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.14
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.11
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.98
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.94
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.74
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.74
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.69
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.69
PRK15386	426	type III secretion protein GogB; Provisional	97.48
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.39
PLN03150	623	hypothetical protein; Provisional	97.21
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.14
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.87
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.72
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.7
PLN03150	623	hypothetical protein; Provisional	96.64
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.55
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.28
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.27
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.22
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.88
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.69
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.62
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.48
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.32
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.95
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.59
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.49
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.33
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	91.44
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.18
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	90.5
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	87.21
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	86.97
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	83.0
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.54

>PLN03210 Resistant to P

Probab=99.84  E-value=3.6e-20  Score=197.35  Aligned_cols=282  Identities=17%  Similarity=0.195  Sum_probs=175.6

Q ss_pred             ccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecc
Q 036801           33 FVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFK  112 (388)
Q Consensus        33 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  112 (388)
                      ..+|++|++.++ .++.++.+         +..+++|+.|++.++..+..++.    ...+++|+.|++.+|..+..+|.
T Consensus       610 ~~~L~~L~L~~s-~l~~L~~~---------~~~l~~Lk~L~Ls~~~~l~~ip~----ls~l~~Le~L~L~~c~~L~~lp~  675 (1153)
T PLN03210        610 PENLVKLQMQGS-KLEKLWDG---------VHSLTGLRNIDLRGSKNLKEIPD----LSMATNLETLKLSDCSSLVELPS  675 (1153)
T ss_pred             ccCCcEEECcCc-cccccccc---------cccCCCCCEEECCCCCCcCcCCc----cccCCcccEEEecCCCCccccch
Confidence            456677777666 45555444         55688888888887766666653    34678889999988888887776


Q ss_pred             cccCCccccccCCccEEEEeecCccccccccchh-hccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCC
Q 036801          113 RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD-LLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLP  191 (388)
Q Consensus       113 ~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  191 (388)
                      ..      ..+++|+.|++++|..+   ..+|.+ .+++|+.|++++|..+.  .+|.    ..++|+.|++.++.+   
T Consensus       676 si------~~L~~L~~L~L~~c~~L---~~Lp~~i~l~sL~~L~Lsgc~~L~--~~p~----~~~nL~~L~L~~n~i---  737 (1153)
T PLN03210        676 SI------QYLNKLEDLDMSRCENL---EILPTGINLKSLYRLNLSGCSRLK--SFPD----ISTNISWLDLDETAI---  737 (1153)
T ss_pred             hh------hccCCCCEEeCCCCCCc---CccCCcCCCCCCCEEeCCCCCCcc--cccc----ccCCcCeeecCCCcc---
Confidence            65      57888888988887654   455654 47788888888887665  2332    246788888855566   


Q ss_pred             ceeecCcc-ccccceeeeee-ccceecc----c--cCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCce
Q 036801          192 KEKVENGV-EVIIREAYNCY-DMKYILK----H--ESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLK  263 (388)
Q Consensus       192 ~~~~~~~~-~~~L~~~~l~l-~l~~i~~----~--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~  263 (388)
                       ..+|... ..+|....++- ....++.    .  ......++|+.|++++|..+..+|..+..+++|+.|++++|+++.
T Consensus       738 -~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~  816 (1153)
T PLN03210        738 -EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE  816 (1153)
T ss_pred             -ccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence             3344221 22333211111 1111110    0  111234789999999998888888888899999999999999998


Q ss_pred             eecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEe
Q 036801          264 NVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLL  343 (388)
Q Consensus       264 ~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~  343 (388)
                      .+|...   .+++|++|++++|..+..+...               .++|+.|++.+. .++.+|...  ..+++|+.|+
T Consensus       817 ~LP~~~---~L~sL~~L~Ls~c~~L~~~p~~---------------~~nL~~L~Ls~n-~i~~iP~si--~~l~~L~~L~  875 (1153)
T PLN03210        817 TLPTGI---NLESLESLDLSGCSRLRTFPDI---------------STNISDLNLSRT-GIEEVPWWI--EKFSNLSFLD  875 (1153)
T ss_pred             eeCCCC---CccccCEEECCCCCcccccccc---------------ccccCEeECCCC-CCccChHHH--hcCCCCCEEE
Confidence            887642   6789999999999877655321               134444444442 344444332  3444444444


Q ss_pred             ccCCcccccCCCCCcCCCCcceEEE
Q 036801          344 VDDCTNMEIFSRGELSTPMLHKVQL  368 (388)
Q Consensus       344 l~~c~~l~~l~~~~~~~~~L~~l~l  368 (388)
                      +.+|++++.+|.....++.|+.+++
T Consensus       876 L~~C~~L~~l~~~~~~L~~L~~L~l  900 (1153)
T PLN03210        876 MNGCNNLQRVSLNISKLKHLETVDF  900 (1153)
T ss_pred             CCCCCCcCccCcccccccCCCeeec
Confidence            4444444444443333334433333

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.84  E-value=3.7e-20  Score=197.29  Aligned_cols=293  Identities=18%  Similarity=0.248  Sum_probs=170.1

Q ss_pred             CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801            5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS   84 (388)
Q Consensus         5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~   84 (388)
                      ..+|+.|++.++. +..+ |..+.   .+++|+.|++++|..+..++.          +..+++|+.|++.+|..+..++
T Consensus       610 ~~~L~~L~L~~s~-l~~L-~~~~~---~l~~Lk~L~Ls~~~~l~~ip~----------ls~l~~Le~L~L~~c~~L~~lp  674 (1153)
T PLN03210        610 PENLVKLQMQGSK-LEKL-WDGVH---SLTGLRNIDLRGSKNLKEIPD----------LSMATNLETLKLSDCSSLVELP  674 (1153)
T ss_pred             ccCCcEEECcCcc-cccc-ccccc---cCCCCCEEECCCCCCcCcCCc----------cccCCcccEEEecCCCCccccc
Confidence            3567777776643 4443 44444   567777777776655555443          3356667777776666666555


Q ss_pred             CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccc
Q 036801           85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTT  164 (388)
Q Consensus        85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~  164 (388)
                      ..   +..+++|+.|++++|..++.+|...       .+++|+.|++++|..+   ..+|. ..++|+.|+++++.... 
T Consensus       675 ~s---i~~L~~L~~L~L~~c~~L~~Lp~~i-------~l~sL~~L~Lsgc~~L---~~~p~-~~~nL~~L~L~~n~i~~-  739 (1153)
T PLN03210        675 SS---IQYLNKLEDLDMSRCENLEILPTGI-------NLKSLYRLNLSGCSRL---KSFPD-ISTNISWLDLDETAIEE-  739 (1153)
T ss_pred             hh---hhccCCCCEEeCCCCCCcCccCCcC-------CCCCCCEEeCCCCCCc---ccccc-ccCCcCeeecCCCcccc-
Confidence            44   4556677777777766666555432       4566666666665432   22221 23456666665544211 


Q ss_pred             cccchhHhhcCCCccEEEE-EeccC--CCCceeec---Cccccccceeeeee--ccceeccccCCCCCCccceEEecCCc
Q 036801          165 ILSLDDFLQRFHTLKVLQI-EGYNY--WLPKEKVE---NGVEVIIREAYNCY--DMKYILKHESSSIMDNLVILRVSSCH  236 (388)
Q Consensus       165 ~~~~~~~~~~l~~L~~L~l-~~~~l--~~~~~~~~---~~~~~~L~~~~l~l--~l~~i~~~~~l~~l~~L~~L~l~~c~  236 (388)
                        +|.. + .+++|+.|.+ .+...  +.....++   ....++|+...+.-  .+..+|  ..++.+++|+.|++.+|.
T Consensus       740 --lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP--~si~~L~~L~~L~Ls~C~  813 (1153)
T PLN03210        740 --FPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP--SSIQNLHKLEHLEIENCI  813 (1153)
T ss_pred             --cccc-c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC--hhhhCCCCCCEEECCCCC
Confidence              3321 1 3455555555 22110  00000000   00111222111111  122232  456678889999999998


Q ss_pred             cccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceeccccccee
Q 036801          237 HLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNEL  316 (388)
Q Consensus       237 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L  316 (388)
                      .++.+|... .+++|+.|++++|..+..++.     ...+|+.|++.+ +.+++++..            ...+++|+.|
T Consensus       814 ~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~-n~i~~iP~s------------i~~l~~L~~L  874 (1153)
T PLN03210        814 NLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSR-TGIEEVPWW------------IEKFSNLSFL  874 (1153)
T ss_pred             CcCeeCCCC-CccccCEEECCCCCccccccc-----cccccCEeECCC-CCCccChHH------------HhcCCCCCEE
Confidence            888887655 678899999998888776654     236788888855 345544322            2246788888


Q ss_pred             ecccccccceeccCcccccCCCcceEeccCCcccccCC
Q 036801          317 RLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFS  354 (388)
Q Consensus       317 ~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~  354 (388)
                      ++.+|++++.++...  ..+++|+.+++.+|++++.++
T Consensus       875 ~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        875 DMNGCNNLQRVSLNI--SKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             ECCCCCCcCccCccc--ccccCCCeeecCCCccccccc
Confidence            888888888887765  677888888888888776543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=8.3e-20  Score=193.46  Aligned_cols=329  Identities=14%  Similarity=0.084  Sum_probs=147.3

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      .+++|++|++++|.....+ |..+..  .+++|++|++++|.-...++.           ..+++|++|++.++ .+...
T Consensus        91 ~l~~L~~L~Ls~n~~~~~i-p~~~~~--~l~~L~~L~Ls~n~l~~~~p~-----------~~l~~L~~L~Ls~n-~~~~~  155 (968)
T PLN00113         91 RLPYIQTINLSNNQLSGPI-PDDIFT--TSSSLRYLNLSNNNFTGSIPR-----------GSIPNLETLDLSNN-MLSGE  155 (968)
T ss_pred             CCCCCCEEECCCCccCCcC-ChHHhc--cCCCCCEEECcCCccccccCc-----------cccCCCCEEECcCC-ccccc
Confidence            3455555555554322222 322221  455555555555522111111           23555666666543 33322


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeecccccc
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFVDE  161 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~~~  161 (388)
                      .+..  ++.+++|++|++++|.....+|...      ..+++|++|++++|.+.   ..+|.  +.+++|+.|+++++..
T Consensus       156 ~p~~--~~~l~~L~~L~L~~n~l~~~~p~~~------~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        156 IPND--IGSFSSLKVLDLGGNVLVGKIPNSL------TNLTSLEFLTLASNQLV---GQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             CChH--HhcCCCCCEEECccCcccccCChhh------hhCcCCCeeeccCCCCc---CcCChHHcCcCCccEEECcCCcc
Confidence            2222  4456666666666653222233222      35566666666665542   22232  2355666666665532


Q ss_pred             ccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee---ccceeccccCCCCCCccceEEecCCcc
Q 036801          162 LTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMDNLVILRVSSCHH  237 (388)
Q Consensus       162 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~  237 (388)
                      ..  ..|. .+..+++|+.|++..+.+   ...+|.. +.++.+ +.+.+   .+.+..+ ..+..+++|+.|++++|..
T Consensus       225 ~~--~~p~-~l~~l~~L~~L~L~~n~l---~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        225 SG--EIPY-EIGGLTSLNHLDLVYNNL---TGPIPSS-LGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             CC--cCCh-hHhcCCCCCEEECcCcee---ccccChh-HhCCCCCCEEECcCCeeeccCc-hhHhhccCcCEEECcCCee
Confidence            21  2222 455566666666633333   2223321 111222 12222   2222222 3444555666666665544


Q ss_pred             ccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCC-----------C-cccccc
Q 036801          238 LINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDD-----------D-HDAAKD  305 (388)
Q Consensus       238 l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~-----------~-~~~~~~  305 (388)
                      ...+|..+..+++|+.|+++++......+.  ....+++|+.|++.++.-...+.......           . ......
T Consensus       297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~  374 (968)
T PLN00113        297 SGEIPELVIQLQNLEILHLFSNNFTGKIPV--ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE  374 (968)
T ss_pred             ccCCChhHcCCCCCcEEECCCCccCCcCCh--hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence            344444455556666666655432222222  22345566666665443211111000000           0 000000


Q ss_pred             ceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEec
Q 036801          306 EVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNM  370 (388)
Q Consensus       306 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~  370 (388)
                      ....+++|+.|++.++.-...++...  ..+++|+.|++.+|.--..+|..+..++.|+.++++.
T Consensus       375 ~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  437 (968)
T PLN00113        375 GLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN  437 (968)
T ss_pred             hHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence            01123445555555443222333322  4567777777777655455666666777888887763

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.81  E-value=2.3e-19  Score=190.08  Aligned_cols=330  Identities=15%  Similarity=0.067  Sum_probs=180.8

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      +.+++|++|++++|. +....|..++   .+++|++|++++|.-...++..         +..+++|++|++.++ .+..
T Consensus       137 ~~l~~L~~L~Ls~n~-~~~~~p~~~~---~l~~L~~L~L~~n~l~~~~p~~---------~~~l~~L~~L~L~~n-~l~~  202 (968)
T PLN00113        137 GSIPNLETLDLSNNM-LSGEIPNDIG---SFSSLKVLDLGGNVLVGKIPNS---------LTNLTSLEFLTLASN-QLVG  202 (968)
T ss_pred             cccCCCCEEECcCCc-ccccCChHHh---cCCCCCEEECccCcccccCChh---------hhhCcCCCeeeccCC-CCcC
Confidence            357889999999865 4444577788   7999999999988533444443         567888888888775 3443


Q ss_pred             ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeeccccc
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFVD  160 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~~  160 (388)
                      ..+..  +..+++|+.|++++|.....+|...      ..+++|++|++++|.+.   ..+|.  +.+++|+.|+++.+.
T Consensus       203 ~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~l------~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        203 QIPRE--LGQMKSLKWIYLGYNNLSGEIPYEI------GGLTSLNHLDLVYNNLT---GPIPSSLGNLKNLQYLFLYQNK  271 (968)
T ss_pred             cCChH--HcCcCCccEEECcCCccCCcCChhH------hcCCCCCEEECcCceec---cccChhHhCCCCCCEEECcCCe
Confidence            33332  5667888888888774333344333      46778888888777652   22332  346777777777764


Q ss_pred             cccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee---ccceeccccCCCCCCccceEEecCCc
Q 036801          161 ELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMDNLVILRVSSCH  236 (388)
Q Consensus       161 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~  236 (388)
                      ...  ..|. .+..+++|+.|++..+.+   ...+|..+ .++.+ ..+.+   .+.+..+ ..+..+++|+.|++.+|.
T Consensus       272 l~~--~~p~-~l~~l~~L~~L~Ls~n~l---~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~  343 (968)
T PLN00113        272 LSG--PIPP-SIFSLQKLISLDLSDNSL---SGEIPELV-IQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNK  343 (968)
T ss_pred             eec--cCch-hHhhccCcCEEECcCCee---ccCCChhH-cCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCC
Confidence            332  2333 456677777777744444   33333221 12222 22322   2332223 445566777777777765


Q ss_pred             cccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCC------------Cccccc
Q 036801          237 HLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDD------------DHDAAK  304 (388)
Q Consensus       237 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~------------~~~~~~  304 (388)
                      ....+|..+..+++|+.|+++++.....++.  ..+.+++|+.|++.++.-...+.......            ......
T Consensus       344 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~--~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p  421 (968)
T PLN00113        344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE--GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP  421 (968)
T ss_pred             CcCcCChHHhCCCCCcEEECCCCeeEeeCCh--hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC
Confidence            5555555566666777777765432222222  12334555555554332111111000000            000000


Q ss_pred             cceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEec
Q 036801          305 DEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNM  370 (388)
Q Consensus       305 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~  370 (388)
                      .....++.|+.|+++++.-...++...  ..+++|+.|++.+|.....+|... ..++|+.++++.
T Consensus       422 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~  484 (968)
T PLN00113        422 SEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSR  484 (968)
T ss_pred             hhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc-ccccceEEECcC
Confidence            112234566666666653222333322  356777777777776555555543 346777777763

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.76  E-value=2.8e-19  Score=166.63  Aligned_cols=327  Identities=16%  Similarity=0.137  Sum_probs=161.4

Q ss_pred             cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccc---------------cccccccccccccceEe
Q 036801            9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQ---------------EEDRNNIVIFPRLQYLK   73 (388)
Q Consensus         9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~---------------~~~~~~~~~l~~L~~L~   73 (388)
                      +.|++++ +.+...-+..|.   ++++|+.+.+.+| .++.+|....-               ......+..++.|++|+
T Consensus        81 ~~Ldlsn-Nkl~~id~~~f~---nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   81 QTLDLSN-NKLSHIDFEFFY---NLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             eeeeccc-cccccCcHHHHh---cCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            3455554 334444344344   5555666655555 34444443110               00111244567777777


Q ss_pred             cccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhh---ccC
Q 036801           74 MYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDL---LCK  150 (388)
Q Consensus        74 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~---l~~  150 (388)
                      ++. +.+..++...  +-.-+++++|+++++ .++.+....|     ..+.+|..|.+++|.+    ..+|...   +++
T Consensus       156 LSr-N~is~i~~~s--fp~~~ni~~L~La~N-~It~l~~~~F-----~~lnsL~tlkLsrNri----ttLp~r~Fk~L~~  222 (873)
T KOG4194|consen  156 LSR-NLISEIPKPS--FPAKVNIKKLNLASN-RITTLETGHF-----DSLNSLLTLKLSRNRI----TTLPQRSFKRLPK  222 (873)
T ss_pred             hhh-chhhcccCCC--CCCCCCceEEeeccc-cccccccccc-----cccchheeeecccCcc----cccCHHHhhhcch
Confidence            765 4565555443  333355777777766 5555555555     4566777777777766    4555543   557


Q ss_pred             ccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee---ccceeccccCCCCCCc
Q 036801          151 LKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMDN  226 (388)
Q Consensus       151 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~~  226 (388)
                      |+.|++..+....   ...-.+.++++|+.|.+..|.+    ..+.+|.|..+.+ ..+.+   .+..+.. +++=++++
T Consensus       223 L~~LdLnrN~iri---ve~ltFqgL~Sl~nlklqrN~I----~kL~DG~Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~  294 (873)
T KOG4194|consen  223 LESLDLNRNRIRI---VEGLTFQGLPSLQNLKLQRNDI----SKLDDGAFYGLEKMEHLNLETNRLQAVNE-GWLFGLTS  294 (873)
T ss_pred             hhhhhccccceee---ehhhhhcCchhhhhhhhhhcCc----ccccCcceeeecccceeecccchhhhhhc-ccccccch
Confidence            7777777655433   2223566777777777755555    4455666654444 23333   4444443 44445666


Q ss_pred             cceEEecCCcccccc-CCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCC-------
Q 036801          227 LVILRVSSCHHLINL-VPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDD-------  298 (388)
Q Consensus       227 L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~-------  298 (388)
                      |++|+++.+. +..+ +.....+++|+.|+++. +.+..+++..+ ..+..|++|.++. +.+..+....-..       
T Consensus       295 L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf-~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~L  370 (873)
T KOG4194|consen  295 LEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSF-RVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKL  370 (873)
T ss_pred             hhhhccchhh-hheeecchhhhcccceeEeccc-cccccCChhHH-HHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhh
Confidence            6666666552 2222 22334455666666663 35555554432 2344444444422 2222221100000       


Q ss_pred             ---------CccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCC-CcCCCCcceEEE
Q 036801          299 ---------DHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQL  368 (388)
Q Consensus       299 ---------~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l  368 (388)
                               -++-+...+..+++|+.|.+.+ .+++.++... +..++.|++|++.+. -+.++-.. +..+ .|+++.+
T Consensus       371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             cCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhh-hccCcccceecCCCC-cceeecccccccc-hhhhhhh
Confidence                     0000000022356666666655 3566666543 345666666666653 33333222 2223 5555554


Q ss_pred             e
Q 036801          369 N  369 (388)
Q Consensus       369 ~  369 (388)
                      .
T Consensus       447 n  447 (873)
T KOG4194|consen  447 N  447 (873)
T ss_pred             c
Confidence            4

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.74  E-value=7.4e-19  Score=163.87  Aligned_cols=300  Identities=15%  Similarity=0.114  Sum_probs=170.4

Q ss_pred             ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCC---------
Q 036801           35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCP---------  105 (388)
Q Consensus        35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~---------  105 (388)
                      .-+.|++++| ++..+...+        +..+++|+.+++.. +.+..+|..   .....+|+.|++.++.         
T Consensus        79 ~t~~LdlsnN-kl~~id~~~--------f~nl~nLq~v~l~~-N~Lt~IP~f---~~~sghl~~L~L~~N~I~sv~se~L  145 (873)
T KOG4194|consen   79 QTQTLDLSNN-KLSHIDFEF--------FYNLPNLQEVNLNK-NELTRIPRF---GHESGHLEKLDLRHNLISSVTSEEL  145 (873)
T ss_pred             ceeeeecccc-ccccCcHHH--------HhcCCcceeeeecc-chhhhcccc---cccccceeEEeeeccccccccHHHH
Confidence            4567999998 566654442        45678888887765 456665544   2334446666665541         


Q ss_pred             --------------CceEecccccCCccccccCCccEEEEeecCccccccccchh---hccCccEeeccccccccccccc
Q 036801          106 --------------GFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD---LLCKLKCLDVEFVDELTTILSL  168 (388)
Q Consensus       106 --------------~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~---~l~~L~~L~l~~~~~~~~~~~~  168 (388)
                                    .+.+++...+     ..-.++++|++.+|.+    ..+..+   .+.+|..|.++.++.   +.+|
T Consensus       146 ~~l~alrslDLSrN~is~i~~~sf-----p~~~ni~~L~La~N~I----t~l~~~~F~~lnsL~tlkLsrNri---ttLp  213 (873)
T KOG4194|consen  146 SALPALRSLDLSRNLISEIPKPSF-----PAKVNIKKLNLASNRI----TTLETGHFDSLNSLLTLKLSRNRI---TTLP  213 (873)
T ss_pred             HhHhhhhhhhhhhchhhcccCCCC-----CCCCCceEEeeccccc----cccccccccccchheeeecccCcc---cccC
Confidence                          3333333322     2334556666655554    233332   244566666665543   2366


Q ss_pred             hhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee---ccceeccccCCCCCCccceEEecCCccccccC-C
Q 036801          169 DDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMDNLVILRVSSCHHLINLV-P  243 (388)
Q Consensus       169 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~-~  243 (388)
                      ...++++++|+.|++..|.+    ++...-.|..|.+ +.+.+   +...+.+ ..+-.+.++++|++..+ .+..+. .
T Consensus       214 ~r~Fk~L~~L~~LdLnrN~i----rive~ltFqgL~Sl~nlklqrN~I~kL~D-G~Fy~l~kme~l~L~~N-~l~~vn~g  287 (873)
T KOG4194|consen  214 QRSFKRLPKLESLDLNRNRI----RIVEGLTFQGLPSLQNLKLQRNDISKLDD-GAFYGLEKMEHLNLETN-RLQAVNEG  287 (873)
T ss_pred             HHHhhhcchhhhhhccccce----eeehhhhhcCchhhhhhhhhhcCcccccC-cceeeecccceeecccc-hhhhhhcc
Confidence            66777788888888755666    4443333333333 23333   4444444 55667788888888776 344332 4


Q ss_pred             CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCC------------CCcccccc-ceecc
Q 036801          244 SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDD------------DDHDAAKD-EVIAF  310 (388)
Q Consensus       244 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~------------~~~~~~~~-~~~~~  310 (388)
                      |+.+++.|+.|++++ +.+..+....| ...++|++|++++ +.++++....-.            ..+.+..+ .+..+
T Consensus       288 ~lfgLt~L~~L~lS~-NaI~rih~d~W-sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l  364 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSY-NAIQRIHIDSW-SFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL  364 (873)
T ss_pred             cccccchhhhhccch-hhhheeecchh-hhcccceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence            678899999999986 46766655545 3678999999954 456554221100            00000001 12345


Q ss_pred             cccceeecccccccceecc-CcccccCCCcceEeccCCcccccCCCCC-cCCCCcceEEEe
Q 036801          311 SKLNELRLLNLESLRSFYS-GYCALNFPSLERLLVDDCTNMEIFSRGE-LSTPMLHKVQLN  369 (388)
Q Consensus       311 ~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~l~l~  369 (388)
                      ++|+.|++++..---.+.. ...+..+++|++|++.+ ++++.+|... ..+++|+++++.
T Consensus       365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~  424 (873)
T KOG4194|consen  365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLG  424 (873)
T ss_pred             hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCC
Confidence            6666666665432111111 11234578888888887 6788887543 346788888887

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.63  E-value=4.4e-18  Score=160.02  Aligned_cols=326  Identities=16%  Similarity=0.190  Sum_probs=171.9

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      +-+|-++-.+++++..-..-+|..+.   .+++++.|.|.+. ++..+|.+         +..+.+|+.|.+.+ +.+..
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~---qMt~~~WLkLnrt-~L~~vPeE---------L~~lqkLEHLs~~H-N~L~~   69 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVE---QMTQMTWLKLNRT-KLEQVPEE---------LSRLQKLEHLSMAH-NQLIS   69 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHH---HhhheeEEEechh-hhhhChHH---------HHHHhhhhhhhhhh-hhhHh
Confidence            44666777777776655455677766   6777777777765 56676666         66677777777765 34544


Q ss_pred             ccCCCcccccCCCccEEEeecCCCc--eEecccccCCccccccCCccEEEEeecCccccccccchh--hccCccEeeccc
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGF--MVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD--LLCKLKCLDVEF  158 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l--~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~--~l~~L~~L~l~~  158 (388)
                      +...   ...+|.|+.+.++.+ ++  ..+|...+      .+.-|..|+++.|..    ..+|.+  .-+++-.|+++.
T Consensus        70 vhGE---Ls~Lp~LRsv~~R~N-~LKnsGiP~diF------~l~dLt~lDLShNqL----~EvP~~LE~AKn~iVLNLS~  135 (1255)
T KOG0444|consen   70 VHGE---LSDLPRLRSVIVRDN-NLKNSGIPTDIF------RLKDLTILDLSHNQL----REVPTNLEYAKNSIVLNLSY  135 (1255)
T ss_pred             hhhh---hccchhhHHHhhhcc-ccccCCCCchhc------ccccceeeecchhhh----hhcchhhhhhcCcEEEEccc
Confidence            4333   445666666666655 22  23444443      555566666666555    455543  244555555555


Q ss_pred             cccccccccchhHhhcCCCccEEEEEeccCCCCceeecCcc--ccccceeeeee-ccceeccccCCCCCCccceEEecCC
Q 036801          159 VDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGV--EVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSC  235 (388)
Q Consensus       159 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~--~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c  235 (388)
                      +..-+   +|-..+-+++.|-.|+++.|.+    +.+|...  ..+|..+.++- .+..+.- ..++.+++|+.|.+++.
T Consensus       136 N~Iet---IPn~lfinLtDLLfLDLS~NrL----e~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  136 NNIET---IPNSLFINLTDLLFLDLSNNRL----EMLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTSLSVLHMSNT  207 (1255)
T ss_pred             Ccccc---CCchHHHhhHhHhhhccccchh----hhcCHHHHHHhhhhhhhcCCChhhHHHH-hcCccchhhhhhhcccc
Confidence            43322   4444444555555555544444    2222110  11111111111 2222211 45556677777777665


Q ss_pred             cc-ccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCC-Ccc----------cc
Q 036801          236 HH-LINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDD-DHD----------AA  303 (388)
Q Consensus       236 ~~-l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~-~~~----------~~  303 (388)
                      .. +..+|+.+..+.+|..++++ |+++.-+|..  .-.+++|+.|++++ ++++++....+.. ..+          ..
T Consensus       208 qRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPec--ly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~L  283 (1255)
T KOG0444|consen  208 QRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPEC--LYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQLTVL  283 (1255)
T ss_pred             cchhhcCCCchhhhhhhhhcccc-ccCCCcchHH--HhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchhccc
Confidence            43 45677777777777777777 5667666663  34667777777744 3455443221110 000          01


Q ss_pred             ccceecccccceeeccccc-ccceeccCc---------------------ccccCCCcceEeccCCcccccCCCCCcCCC
Q 036801          304 KDEVIAFSKLNELRLLNLE-SLRSFYSGY---------------------CALNFPSLERLLVDDCTNMEIFSRGELSTP  361 (388)
Q Consensus       304 ~~~~~~~~~L~~L~l~~c~-~l~~l~~~~---------------------~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~  361 (388)
                      +.....+++|+.|.+.+.. ..+.+|+++                     -.+.|++|+.|.+. |+.+-.+|..+.-++
T Consensus       284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~  362 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLP  362 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccc-ccceeechhhhhhcC
Confidence            1122345666666554321 123344433                     00345555555543 455555666555556


Q ss_pred             CcceEEEe
Q 036801          362 MLHKVQLN  369 (388)
Q Consensus       362 ~L~~l~l~  369 (388)
                      .|+.++++
T Consensus       363 ~l~vLDlr  370 (1255)
T KOG0444|consen  363 DLKVLDLR  370 (1255)
T ss_pred             Ccceeecc
Confidence            66666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.62  E-value=7.8e-18  Score=158.34  Aligned_cols=308  Identities=16%  Similarity=0.143  Sum_probs=162.8

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccc-cccEeeecccccccccccccccccceEecccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCH-VLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT   81 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~   81 (388)
                      +.+++|++|.+.++ .+.++ -..+.   .++.||.+.+++|. +...+|.+         +..+.-|+.|++++ +.++
T Consensus        52 ~~lqkLEHLs~~HN-~L~~v-hGELs---~Lp~LRsv~~R~N~LKnsGiP~d---------iF~l~dLt~lDLSh-NqL~  116 (1255)
T KOG0444|consen   52 SRLQKLEHLSMAHN-QLISV-HGELS---DLPRLRSVIVRDNNLKNSGIPTD---------IFRLKDLTILDLSH-NQLR  116 (1255)
T ss_pred             HHHhhhhhhhhhhh-hhHhh-hhhhc---cchhhHHHhhhccccccCCCCch---------hcccccceeeecch-hhhh
Confidence            45677778887774 34433 12233   67778887777763 22233333         56677777777776 4677


Q ss_pred             cccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchh--hccCccEeecccc
Q 036801           82 SFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD--LLCKLKCLDVEFV  159 (388)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~--~l~~L~~L~l~~~  159 (388)
                      +.|..   .....++-+|+++++ +++.+|...+     -++.-|-.|++++|..    ..+|+-  .+.+|++|.++++
T Consensus       117 EvP~~---LE~AKn~iVLNLS~N-~IetIPn~lf-----inLtDLLfLDLS~NrL----e~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  117 EVPTN---LEYAKNSIVLNLSYN-NIETIPNSLF-----INLTDLLFLDLSNNRL----EMLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             hcchh---hhhhcCcEEEEcccC-ccccCCchHH-----HhhHhHhhhccccchh----hhcCHHHHHHhhhhhhhcCCC
Confidence            66655   445666777777766 6666666655     3666666677776665    455553  3666777777665


Q ss_pred             ccccccccchhHhhcCCCccEEEE-EeccCCCCceeecCcc--ccccceeeeee-ccceeccccCCCCCCccceEEecCC
Q 036801          160 DELTTILSLDDFLQRFHTLKVLQI-EGYNYWLPKEKVENGV--EVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSC  235 (388)
Q Consensus       160 ~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~--~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c  235 (388)
                      .-.-   +....+..+++|++|.+ +.+..   ...+|..+  ..||...+++- ++..+|  +.+-.+++|+.|+++++
T Consensus       184 PL~h---fQLrQLPsmtsL~vLhms~TqRT---l~N~Ptsld~l~NL~dvDlS~N~Lp~vP--ecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  184 PLNH---FQLRQLPSMTSLSVLHMSNTQRT---LDNIPTSLDDLHNLRDVDLSENNLPIVP--ECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             hhhH---HHHhcCccchhhhhhhcccccch---hhcCCCchhhhhhhhhccccccCCCcch--HHHhhhhhhheeccCcC
Confidence            4322   11112333444444444 22221   12222111  11222111111 333332  33334566666666665


Q ss_pred             ccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccc--cccccCCCC-----------Cccc
Q 036801          236 HHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMIT--EIVLADDDD-----------DHDA  302 (388)
Q Consensus       236 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~--~i~~~~~~~-----------~~~~  302 (388)
                       .++.+......-.+|++|.++. +.++.+|.  +++.++.|+.|.+.+ ++++  .++.+.+..           ..+-
T Consensus       256 -~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~--avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~LEl  330 (1255)
T KOG0444|consen  256 -KITELNMTEGEWENLETLNLSR-NQLTVLPD--AVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNKLEL  330 (1255)
T ss_pred             -ceeeeeccHHHHhhhhhhcccc-chhccchH--HHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcccccc
Confidence             3444433333444566666653 34555544  334556666655532 2221  111000000           0000


Q ss_pred             cccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCC
Q 036801          303 AKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFS  354 (388)
Q Consensus       303 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~  354 (388)
                      .+++..-+++|+.|.+.. +.+..+|..+  .-++.|+.|+++..|++..=|
T Consensus       331 VPEglcRC~kL~kL~L~~-NrLiTLPeaI--HlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  331 VPEGLCRCVKLQKLKLDH-NRLITLPEAI--HLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             CchhhhhhHHHHHhcccc-cceeechhhh--hhcCCcceeeccCCcCccCCC
Confidence            122233467888887755 5688898887  668999999999999876544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.42  E-value=1.2e-12  Score=131.58  Aligned_cols=252  Identities=19%  Similarity=0.099  Sum_probs=134.8

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      +-..|+++++ .++.+ |..+.     ++|+.|.+.+| +++.++..            .++|++|++.+ ++++.++..
T Consensus       202 ~~~~LdLs~~-~LtsL-P~~l~-----~~L~~L~L~~N-~Lt~LP~l------------p~~Lk~LdLs~-N~LtsLP~l  260 (788)
T PRK15387        202 GNAVLNVGES-GLTTL-PDCLP-----AHITTLVIPDN-NLTSLPAL------------PPELRTLEVSG-NQLTSLPVL  260 (788)
T ss_pred             CCcEEEcCCC-CCCcC-Ccchh-----cCCCEEEccCC-cCCCCCCC------------CCCCcEEEecC-CccCcccCc
Confidence            3456788775 56655 44444     25788888876 56665432            57788888876 467766533


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccc
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTIL  166 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~  166 (388)
                            .++|++|++.+| .+..++.         ...+|..|++.+|.+    ..+|. ..++|+.|+++++....   
T Consensus       261 ------p~sL~~L~Ls~N-~L~~Lp~---------lp~~L~~L~Ls~N~L----t~LP~-~p~~L~~LdLS~N~L~~---  316 (788)
T PRK15387        261 ------PPGLLELSIFSN-PLTHLPA---------LPSGLCKLWIFGNQL----TSLPV-LPPGLQELSVSDNQLAS---  316 (788)
T ss_pred             ------ccccceeeccCC-chhhhhh---------chhhcCEEECcCCcc----ccccc-cccccceeECCCCcccc---
Confidence                  577888888777 4544432         235677777777766    44554 24678888887764322   


Q ss_pred             cchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCC
Q 036801          167 SLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSST  246 (388)
Q Consensus       167 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~  246 (388)
                      +|.    ...+|+.|.+..|.+   + .+|.                         ...+|+.|++++| .++.+|..  
T Consensus       317 Lp~----lp~~L~~L~Ls~N~L---~-~LP~-------------------------lp~~Lq~LdLS~N-~Ls~LP~l--  360 (788)
T PRK15387        317 LPA----LPSELCKLWAYNNQL---T-SLPT-------------------------LPSGLQELSVSDN-QLASLPTL--  360 (788)
T ss_pred             CCC----CcccccccccccCcc---c-cccc-------------------------cccccceEecCCC-ccCCCCCC--
Confidence            222    123566666644555   2 1221                         1135666666554 34444431  


Q ss_pred             CCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccce
Q 036801          247 SFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRS  326 (388)
Q Consensus       247 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  326 (388)
                       ..+|+.|.+++ +.+..++.     ...+|+.|+++++ .++.+..               .+++|+.|+++++ .+..
T Consensus       361 -p~~L~~L~Ls~-N~L~~LP~-----l~~~L~~LdLs~N-~Lt~LP~---------------l~s~L~~LdLS~N-~Lss  416 (788)
T PRK15387        361 -PSELYKLWAYN-NRLTSLPA-----LPSGLKELIVSGN-RLTSLPV---------------LPSELKELMVSGN-RLTS  416 (788)
T ss_pred             -Ccccceehhhc-cccccCcc-----cccccceEEecCC-cccCCCC---------------cccCCCEEEccCC-cCCC
Confidence             23455555553 23444332     1234556666432 3333221               1245555555554 3444


Q ss_pred             eccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801          327 FYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN  369 (388)
Q Consensus       327 l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~  369 (388)
                      +|..     ..+|+.|++++ ++++.+|..+..++.|+.|+++
T Consensus       417 IP~l-----~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        417 LPML-----PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLE  453 (788)
T ss_pred             CCcc-----hhhhhhhhhcc-CcccccChHHhhccCCCeEECC
Confidence            4321     13455555554 3455555555555555555555

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.42  E-value=1.6e-15  Score=136.05  Aligned_cols=47  Identities=13%  Similarity=0.099  Sum_probs=37.2

Q ss_pred             cccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEec
Q 036801          322 ESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNM  370 (388)
Q Consensus       322 ~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~  370 (388)
                      ..++.++... ...+.+|..|++.+ +.++.+|.++..|.+|+++++.+
T Consensus       491 nqi~~vd~~~-l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~g  537 (565)
T KOG0472|consen  491 NQIGSVDPSG-LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDG  537 (565)
T ss_pred             ccccccChHH-hhhhhhcceeccCC-CchhhCChhhccccceeEEEecC
Confidence            3455665542 25789999999987 68999999999999999999983

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.41  E-value=2.6e-15  Score=135.38  Aligned_cols=262  Identities=18%  Similarity=0.172  Sum_probs=132.0

Q ss_pred             cccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccc--ccc
Q 036801           65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTN--KFL  142 (388)
Q Consensus        65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~--~~~  142 (388)
                      .+|+++.|.+.+|.++++..... ....|+.|+.|.+..|..++.......+    +.+++|.+|++++|..+++  +..
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~s-la~~C~~l~~l~L~~c~~iT~~~Lk~la----~gC~kL~~lNlSwc~qi~~~gv~~  236 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLS-LARYCRKLRHLNLHSCSSITDVSLKYLA----EGCRKLKYLNLSWCPQISGNGVQA  236 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHH-HHHhcchhhhhhhcccchhHHHHHHHHH----HhhhhHHHhhhccCchhhcCcchH
Confidence            34555555555444443321110 0223455555555555544433222111    3445555555555433211  111


Q ss_pred             cchhhccCccEeeccccccccccccchhHhhcCCCccEEEE-EeccCCCCceeecCccccccceeeeeeccceeccccCC
Q 036801          143 FSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI-EGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESS  221 (388)
Q Consensus       143 lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l  221 (388)
                      +..| +..++.+..++|...+ .......-.++.-+.++++ .|+.+   ++.                   ++|  +.-
T Consensus       237 ~~rG-~~~l~~~~~kGC~e~~-le~l~~~~~~~~~i~~lnl~~c~~l---TD~-------------------~~~--~i~  290 (483)
T KOG4341|consen  237 LQRG-CKELEKLSLKGCLELE-LEALLKAAAYCLEILKLNLQHCNQL---TDE-------------------DLW--LIA  290 (483)
T ss_pred             Hhcc-chhhhhhhhccccccc-HHHHHHHhccChHhhccchhhhccc---cch-------------------HHH--HHh
Confidence            1111 3345555555665544 2222223344555666666 66555   211                   011  112


Q ss_pred             CCCCccceEEecCCccccccCCC--CCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCC
Q 036801          222 SIMDNLVILRVSSCHHLINLVPS--STSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDD  299 (388)
Q Consensus       222 ~~l~~L~~L~l~~c~~l~~l~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~  299 (388)
                      ..+..|+.|+.++|..+++.+-+  ....++|+.+.+..|..+.+.......++.+.|+.+++..|..+++-....-   
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl---  367 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL---  367 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh---
Confidence            23456677777777666544332  2456777777777777777665555566677777777777654443211000   


Q ss_pred             ccccccceecccccceeeccccccccee-----ccCcccccCCCcceEeccCCccccc-CCCCCcCCCCcceEEEe
Q 036801          300 HDAAKDEVIAFSKLNELRLLNLESLRSF-----YSGYCALNFPSLERLLVDDCTNMEI-FSRGELSTPMLHKVQLN  369 (388)
Q Consensus       300 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~l~l~  369 (388)
                             ....+.|+.|.+++|..+++.     ....  ..+..|+.+++++||.+.. .-.....|++|+++++.
T Consensus       368 -------s~~C~~lr~lslshce~itD~gi~~l~~~~--c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  368 -------SRNCPRLRVLSLSHCELITDEGIRHLSSSS--CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI  434 (483)
T ss_pred             -------ccCCchhccCChhhhhhhhhhhhhhhhhcc--ccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence                   113567777777777655544     2222  4566677777777776543 22334567777777776

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.28  E-value=2.6e-14  Score=129.00  Aligned_cols=313  Identities=17%  Similarity=0.178  Sum_probs=195.6

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      .|+.|.++||......+...+..  .+++++.|.+.+|.++++..-...       .+.|++|++|.+..|+.+++....
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~--~CpnIehL~l~gc~~iTd~s~~sl-------a~~C~~l~~l~L~~c~~iT~~~Lk  209 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFAS--NCPNIEHLALYGCKKITDSSLLSL-------ARYCRKLRHLNLHSCSSITDVSLK  209 (483)
T ss_pred             ccccccccccccCCcchhhHHhh--hCCchhhhhhhcceeccHHHHHHH-------HHhcchhhhhhhcccchhHHHHHH
Confidence            57889999988776554455555  799999999999975555222111       346899999999998888764332


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccc-cccccchhhccCccEeecccccccccc
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITT-NKFLFSKDLLCKLKCLDVEFVDELTTI  165 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~-~~~~lp~~~l~~L~~L~l~~~~~~~~~  165 (388)
                      . ....|++|++|+++.|+.+.+-.-    ..+......++.+..+||.... .....-...+..+..+++..|..++ +
T Consensus       210 ~-la~gC~kL~~lNlSwc~qi~~~gv----~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT-D  283 (483)
T KOG4341|consen  210 Y-LAEGCRKLKYLNLSWCPQISGNGV----QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT-D  283 (483)
T ss_pred             H-HHHhhhhHHHhhhccCchhhcCcc----hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc-c
Confidence            1 134599999999999988765111    1122456667777777765421 0001111235567777877887666 4


Q ss_pred             ccchhHhhcCCCccEEEE-EeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-
Q 036801          166 LSLDDFLQRFHTLKVLQI-EGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP-  243 (388)
Q Consensus       166 ~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~-  243 (388)
                      .-...+-.++..|+.+.. +|+.+   +. .+   .               |  .--.+.++|+.|.+.+|..+++.-. 
T Consensus       284 ~~~~~i~~~c~~lq~l~~s~~t~~---~d-~~---l---------------~--aLg~~~~~L~~l~l~~c~~fsd~~ft  339 (483)
T KOG4341|consen  284 EDLWLIACGCHALQVLCYSSCTDI---TD-EV---L---------------W--ALGQHCHNLQVLELSGCQQFSDRGFT  339 (483)
T ss_pred             hHHHHHhhhhhHhhhhcccCCCCC---ch-HH---H---------------H--HHhcCCCceEEEeccccchhhhhhhh
Confidence            433334556788888888 77665   21 11   1               0  0011447888888888887655432 


Q ss_pred             -CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccc
Q 036801          244 -SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLE  322 (388)
Q Consensus       244 -~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  322 (388)
                       ...+.+.|+.+.+..|..+.+-.....+.+++.|+.|.++.|..+++..+       .++....-....|+.+.+.+|+
T Consensus       340 ~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l~~~~c~~~~l~~lEL~n~p  412 (483)
T KOG4341|consen  340 MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHLSSSSCSLEGLEVLELDNCP  412 (483)
T ss_pred             hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh-------hhhhhccccccccceeeecCCC
Confidence             22567788888888887666654555566788899998888876664411       1111111234678888888888


Q ss_pred             ccceeccCcccccCCCcceEeccCCccccc--CCCCCcCCCCcceE
Q 036801          323 SLRSFYSGYCALNFPSLERLLVDDCTNMEI--FSRGELSTPMLHKV  366 (388)
Q Consensus       323 ~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~l  366 (388)
                      .+.+-.... ...+++|+.+++.+|.....  +.....++|+++..
T Consensus       413 ~i~d~~Le~-l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  413 LITDATLEH-LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             CchHHHHHH-HhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            766543321 25678899999888886643  22223355665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.25  E-value=4.2e-11  Score=120.48  Aligned_cols=235  Identities=19%  Similarity=0.162  Sum_probs=152.1

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      ++|+.|.+.++ .++.+ |.      ..++|++|++++| +++.++..            .++|+.|++.++ .+..++.
T Consensus       222 ~~L~~L~L~~N-~Lt~L-P~------lp~~Lk~LdLs~N-~LtsLP~l------------p~sL~~L~Ls~N-~L~~Lp~  279 (788)
T PRK15387        222 AHITTLVIPDN-NLTSL-PA------LPPELRTLEVSGN-QLTSLPVL------------PPGLLELSIFSN-PLTHLPA  279 (788)
T ss_pred             cCCCEEEccCC-cCCCC-CC------CCCCCcEEEecCC-ccCcccCc------------ccccceeeccCC-chhhhhh
Confidence            37899999984 56665 43      4678999999998 67776542            468899999874 5776654


Q ss_pred             CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTI  165 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~  165 (388)
                      .      +++|+.|++.+| .++.+|         ...++|+.|++++|.+    ..+|. ..++|+.|+++++..-.  
T Consensus       280 l------p~~L~~L~Ls~N-~Lt~LP---------~~p~~L~~LdLS~N~L----~~Lp~-lp~~L~~L~Ls~N~L~~--  336 (788)
T PRK15387        280 L------PSGLCKLWIFGN-QLTSLP---------VLPPGLQELSVSDNQL----ASLPA-LPSELCKLWAYNNQLTS--  336 (788)
T ss_pred             c------hhhcCEEECcCC-cccccc---------ccccccceeECCCCcc----ccCCC-CcccccccccccCcccc--
Confidence            3      578999999888 566554         2457899999999877    44443 24578888888764322  


Q ss_pred             ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801          166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS  245 (388)
Q Consensus       166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~  245 (388)
                       +|.    ...+|+.|++..|++   + .+|.                         ..++|+.|+++++ .+..+|.. 
T Consensus       337 -LP~----lp~~Lq~LdLS~N~L---s-~LP~-------------------------lp~~L~~L~Ls~N-~L~~LP~l-  380 (788)
T PRK15387        337 -LPT----LPSGLQELSVSDNQL---A-SLPT-------------------------LPSELYKLWAYNN-RLTSLPAL-  380 (788)
T ss_pred             -ccc----cccccceEecCCCcc---C-CCCC-------------------------CCcccceehhhcc-ccccCccc-
Confidence             332    135799999976777   2 2331                         1245666777664 45555432 


Q ss_pred             CCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccc
Q 036801          246 TSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLR  325 (388)
Q Consensus       246 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  325 (388)
                        ..+|+.|+++++ .+..+|.     ..++|+.|+++++ .++.+..               .+.+|+.|++.++ .+.
T Consensus       381 --~~~L~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~N-~LssIP~---------------l~~~L~~L~Ls~N-qLt  435 (788)
T PRK15387        381 --PSGLKELIVSGN-RLTSLPV-----LPSELKELMVSGN-RLTSLPM---------------LPSGLLSLSVYRN-QLT  435 (788)
T ss_pred             --ccccceEEecCC-cccCCCC-----cccCCCEEEccCC-cCCCCCc---------------chhhhhhhhhccC-ccc
Confidence              346777777753 4555543     2356777777654 3444321               1345667777664 466


Q ss_pred             eeccCcccccCCCcceEeccCCc
Q 036801          326 SFYSGYCALNFPSLERLLVDDCT  348 (388)
Q Consensus       326 ~l~~~~~~~~~~~L~~L~l~~c~  348 (388)
                      .+|..+  ..+++|+.|++++++
T Consensus       436 ~LP~sl--~~L~~L~~LdLs~N~  456 (788)
T PRK15387        436 RLPESL--IHLSSETTVNLEGNP  456 (788)
T ss_pred             ccChHH--hhccCCCeEECCCCC
Confidence            776654  567777777777654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.24  E-value=5e-12  Score=129.54  Aligned_cols=131  Identities=24%  Similarity=0.352  Sum_probs=91.3

Q ss_pred             cCCCCCCccceEEecCCccccccCCCC-----C-CCCCcCEEEEecCCCceeecchhhhhccCccCEEeecccccccccc
Q 036801          219 ESSSIMDNLVILRVSSCHHLINLVPSS-----T-SFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIV  292 (388)
Q Consensus       219 ~~l~~l~~L~~L~l~~c~~l~~l~~~~-----~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~  292 (388)
                      ..+..+.+|++|.|.+|........+.     . .|+++..+.+.+|....+..+.   ...|+|+.|.+.+|..++++.
T Consensus       711 ~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  711 SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh---hccCcccEEEEecccccccCC
Confidence            455678999999999997754322211     2 2667888888888888777653   256899999999999888775


Q ss_pred             ccCCCCCccccccceeccccccee-ecccccccceeccCcccccCCCcceEeccCCcccccCCCC
Q 036801          293 LADDDDDHDAAKDEVIAFSKLNEL-RLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRG  356 (388)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~L~~L-~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~  356 (388)
                      .........  ......|.++..+ .+.+.+.++.+....  ..++.|+.+.+..||+++.+|..
T Consensus       788 ~~~k~~~~l--~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~  848 (889)
T KOG4658|consen  788 PKLKALLEL--KELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL  848 (889)
T ss_pred             CHHHHhhhc--ccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence            433322110  0123567777777 466777777776654  46677999999999999998865

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.23  E-value=1.5e-11  Score=124.10  Aligned_cols=100  Identities=14%  Similarity=0.101  Sum_probs=53.0

Q ss_pred             CccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccc
Q 036801          225 DNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAK  304 (388)
Q Consensus       225 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~  304 (388)
                      ++|+.|++.+| .++.+|..+  .++|+.|+++++ ++..+|..    ..++|+.|++++| .++.+...          
T Consensus       325 ~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~~----lp~~L~~LdLs~N-~Lt~LP~~----------  385 (754)
T PRK15370        325 PGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKN-QITVLPET----LPPTITTLDVSRN-ALTNLPEN----------  385 (754)
T ss_pred             ccceeccccCC-ccccCChhh--cCcccEEECCCC-CCCcCChh----hcCCcCEEECCCC-cCCCCCHh----------
Confidence            56777777666 344454432  256777777764 45544432    1356777777654 34433211          


Q ss_pred             cceecccccceeecccccccceeccCc--ccccCCCcceEeccCCc
Q 036801          305 DEVIAFSKLNELRLLNLESLRSFYSGY--CALNFPSLERLLVDDCT  348 (388)
Q Consensus       305 ~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~~~~L~~L~l~~c~  348 (388)
                          ....|+.|+++++ ++..+|...  +...++.+..|.+.+.+
T Consensus       386 ----l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        386 ----LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             ----HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence                1245666776664 455554322  11224666677666543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.23  E-value=2.2e-11  Score=122.98  Aligned_cols=225  Identities=16%  Similarity=0.110  Sum_probs=134.8

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      .+.+.|.+++. .++.+ |..+.     ++|+.|++++| +++.++..           .+++|+.|++.++ +++.++.
T Consensus       178 ~~~~~L~L~~~-~LtsL-P~~Ip-----~~L~~L~Ls~N-~LtsLP~~-----------l~~nL~~L~Ls~N-~LtsLP~  237 (754)
T PRK15370        178 NNKTELRLKIL-GLTTI-PACIP-----EQITTLILDNN-ELKSLPEN-----------LQGNIKTLYANSN-QLTSIPA  237 (754)
T ss_pred             cCceEEEeCCC-CcCcC-Ccccc-----cCCcEEEecCC-CCCcCChh-----------hccCCCEEECCCC-ccccCCh
Confidence            35677888774 45554 44333     35788888887 56666553           2357888888764 5776665


Q ss_pred             CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTI  165 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~  165 (388)
                      ..     .++|+.|++++| .+..+|...        ..+|+.|++++|.+    ..+|....++|+.|+++++. ++  
T Consensus       238 ~l-----~~~L~~L~Ls~N-~L~~LP~~l--------~s~L~~L~Ls~N~L----~~LP~~l~~sL~~L~Ls~N~-Lt--  296 (754)
T PRK15370        238 TL-----PDTIQEMELSIN-RITELPERL--------PSALQSLDLFHNKI----SCLPENLPEELRYLSVYDNS-IR--  296 (754)
T ss_pred             hh-----hccccEEECcCC-ccCcCChhH--------hCCCCEEECcCCcc----CccccccCCCCcEEECCCCc-cc--
Confidence            42     467888888877 455554332        24678888887766    45565555678888887764 22  


Q ss_pred             ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCccccccCCC
Q 036801          166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLVPS  244 (388)
Q Consensus       166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~  244 (388)
                      .+|.. +  .++|+.|++..|.+    ..+|....++|+...+.- .+..++.  .+  .++|+.|++++| .++.+|..
T Consensus       297 ~LP~~-l--p~sL~~L~Ls~N~L----t~LP~~l~~sL~~L~Ls~N~Lt~LP~--~l--~~sL~~L~Ls~N-~L~~LP~~  364 (754)
T PRK15370        297 TLPAH-L--PSGITHLNVQSNSL----TALPETLPPGLKTLEAGENALTSLPA--SL--PPELQVLDVSKN-QITVLPET  364 (754)
T ss_pred             cCccc-c--hhhHHHHHhcCCcc----ccCCccccccceeccccCCccccCCh--hh--cCcccEEECCCC-CCCcCChh
Confidence            13321 1  23577777755666    334544444454333322 4444432  22  268888888887 45555543


Q ss_pred             CCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccc
Q 036801          245 STSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEI  291 (388)
Q Consensus       245 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i  291 (388)
                      +  .++|+.|++++| .+..+|.. +   ...|+.|+++++ .++.+
T Consensus       365 l--p~~L~~LdLs~N-~Lt~LP~~-l---~~sL~~LdLs~N-~L~~L  403 (754)
T PRK15370        365 L--PPTITTLDVSRN-ALTNLPEN-L---PAALQIMQASRN-NLVRL  403 (754)
T ss_pred             h--cCCcCEEECCCC-cCCCCCHh-H---HHHHHHHhhccC-CcccC
Confidence            3  357888888875 56666553 1   236788888664 44443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.21  E-value=1.7e-12  Score=127.89  Aligned_cols=240  Identities=18%  Similarity=0.219  Sum_probs=149.3

Q ss_pred             CCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhh--ccCccEeeccccccccccccchh
Q 036801           93 FPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDL--LCKLKCLDVEFVDELTTILSLDD  170 (388)
Q Consensus        93 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~--l~~L~~L~l~~~~~~~~~~~~~~  170 (388)
                      ..+|++++++.+ +++.+| +..     ..+++|+.+.+..|.+    ..+|...  ..+|+.|.+..+.-..   .|. 
T Consensus       240 p~nl~~~dis~n-~l~~lp-~wi-----~~~~nle~l~~n~N~l----~~lp~ri~~~~~L~~l~~~~nel~y---ip~-  304 (1081)
T KOG0618|consen  240 PLNLQYLDISHN-NLSNLP-EWI-----GACANLEALNANHNRL----VALPLRISRITSLVSLSAAYNELEY---IPP-  304 (1081)
T ss_pred             cccceeeecchh-hhhcch-HHH-----HhcccceEecccchhH----HhhHHHHhhhhhHHHHHhhhhhhhh---CCC-
Confidence            455666666655 555555 222     4667777777766665    4455543  4467777666654221   332 


Q ss_pred             HhhcCCCccEEEEEeccCCCCceeecCccccccce----eeeee-ccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801          171 FLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE----AYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS  245 (388)
Q Consensus       171 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~----~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~  245 (388)
                      .....+.|++|++..|++    ..+|+.++..+-.    ....- .+...+. .+-..++.|+.|++.++..-....+.+
T Consensus       305 ~le~~~sL~tLdL~~N~L----~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~-~~e~~~~~Lq~LylanN~Ltd~c~p~l  379 (1081)
T KOG0618|consen  305 FLEGLKSLRTLDLQSNNL----PSLPDNFLAVLNASLNTLNVSSNKLSTLPS-YEENNHAALQELYLANNHLTDSCFPVL  379 (1081)
T ss_pred             cccccceeeeeeehhccc----cccchHHHhhhhHHHHHHhhhhcccccccc-ccchhhHHHHHHHHhcCcccccchhhh
Confidence            344577888888866666    5566543321110    00000 2222222 333456889999999886666667778


Q ss_pred             CCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccc
Q 036801          246 TSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLR  325 (388)
Q Consensus       246 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  325 (388)
                      .++++|+.|++++ +.+..+|.. ....++.|++|++++ ++++.+....            ..++.|+.|...+ ..+.
T Consensus       380 ~~~~hLKVLhLsy-NrL~~fpas-~~~kle~LeeL~LSG-NkL~~Lp~tv------------a~~~~L~tL~ahs-N~l~  443 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSY-NRLNSFPAS-KLRKLEELEELNLSG-NKLTTLPDTV------------ANLGRLHTLRAHS-NQLL  443 (1081)
T ss_pred             ccccceeeeeecc-cccccCCHH-HHhchHHhHHHhccc-chhhhhhHHH------------HhhhhhHHHhhcC-Ccee
Confidence            8999999999996 577777765 346789999999966 4677665321            2346666665544 3577


Q ss_pred             eeccCcccccCCCcceEeccCCcccccC--CCCCcCCCCcceEEEeccCCccc
Q 036801          326 SFYSGYCALNFPSLERLLVDDCTNMEIF--SRGELSTPMLHKVQLNMWDEACW  376 (388)
Q Consensus       326 ~l~~~~~~~~~~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~l~l~~~~~~~~  376 (388)
                      ++| ..  ..++.|+.++++ |++++.+  |... ..|+|+.+++.   |+.|
T Consensus       444 ~fP-e~--~~l~qL~~lDlS-~N~L~~~~l~~~~-p~p~LkyLdlS---GN~~  488 (1081)
T KOG0618|consen  444 SFP-EL--AQLPQLKVLDLS-CNNLSEVTLPEAL-PSPNLKYLDLS---GNTR  488 (1081)
T ss_pred             ech-hh--hhcCcceEEecc-cchhhhhhhhhhC-CCcccceeecc---CCcc
Confidence            777 33  578889999987 5777653  3322 23889999998   6665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.16  E-value=6.2e-14  Score=125.96  Aligned_cols=240  Identities=19%  Similarity=0.203  Sum_probs=127.2

Q ss_pred             cccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccc
Q 036801           63 IVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL  142 (388)
Q Consensus        63 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~  142 (388)
                      +..+..|.+|.+.+ +++...|+.   ++.+..++.++++.+ ++..+|.+.+      .++.+..++++.++.    ..
T Consensus        64 l~nL~~l~vl~~~~-n~l~~lp~a---ig~l~~l~~l~vs~n-~ls~lp~~i~------s~~~l~~l~~s~n~~----~e  128 (565)
T KOG0472|consen   64 LKNLACLTVLNVHD-NKLSQLPAA---IGELEALKSLNVSHN-KLSELPEQIG------SLISLVKLDCSSNEL----KE  128 (565)
T ss_pred             hhcccceeEEEecc-chhhhCCHH---HHHHHHHHHhhcccc-hHhhccHHHh------hhhhhhhhhccccce----ee
Confidence            44555566666555 345555544   445555555555554 4444555542      455555555555544    33


Q ss_pred             cchhh--ccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccC
Q 036801          143 FSKDL--LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHES  220 (388)
Q Consensus       143 lp~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~  220 (388)
                      +|.+.  +-.|..++...++..+   .|. .+..+.+|.++.+..+++   ++                     +++ ..
T Consensus       129 l~~~i~~~~~l~dl~~~~N~i~s---lp~-~~~~~~~l~~l~~~~n~l---~~---------------------l~~-~~  179 (565)
T KOG0472|consen  129 LPDSIGRLLDLEDLDATNNQISS---LPE-DMVNLSKLSKLDLEGNKL---KA---------------------LPE-NH  179 (565)
T ss_pred             cCchHHHHhhhhhhhcccccccc---Cch-HHHHHHHHHHhhccccch---hh---------------------CCH-HH
Confidence            44332  3344444444333221   333 333445555555533333   11                     111 11


Q ss_pred             CCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCc
Q 036801          221 SSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDH  300 (388)
Q Consensus       221 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~  300 (388)
                      + .++.|++|+...+ .++.+|+.++.+.+|+-|++.. +.+..+|+.   .++..|++|++ +-+.++.+..+.     
T Consensus       180 i-~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef---~gcs~L~Elh~-g~N~i~~lpae~-----  247 (565)
T KOG0472|consen  180 I-AMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRR-NKIRFLPEF---PGCSLLKELHV-GENQIEMLPAEH-----  247 (565)
T ss_pred             H-HHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhh-cccccCCCC---CccHHHHHHHh-cccHHHhhHHHH-----
Confidence            2 3566677666443 4566777777777777777764 455555542   24455666665 333343332211     


Q ss_pred             cccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801          301 DAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN  369 (388)
Q Consensus       301 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~  369 (388)
                            ...++++..|++++ .+++.+|.+.  ..+.+|++|++++ +.+..+|....++ .|+.+.++
T Consensus       248 ------~~~L~~l~vLDLRd-Nklke~Pde~--clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~le  305 (565)
T KOG0472|consen  248 ------LKHLNSLLVLDLRD-NKLKEVPDEI--CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALE  305 (565)
T ss_pred             ------hcccccceeeeccc-cccccCchHH--HHhhhhhhhcccC-CccccCCcccccc-eeeehhhc
Confidence                  11356677777766 3677777766  5567777777776 5677777666555 66666666

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.15  E-value=9.1e-13  Score=129.69  Aligned_cols=131  Identities=21%  Similarity=0.212  Sum_probs=87.4

Q ss_pred             ccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCcc
Q 036801          148 LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNL  227 (388)
Q Consensus       148 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L  227 (388)
                      ++.|+.|.+.++.--+ ..+|  .+.+...|+.|.+..|.+    .                    .++. ..+.++..|
T Consensus       358 ~~~Lq~LylanN~Ltd-~c~p--~l~~~~hLKVLhLsyNrL----~--------------------~fpa-s~~~kle~L  409 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTD-SCFP--VLVNFKHLKVLHLSYNRL----N--------------------SFPA-SKLRKLEEL  409 (1081)
T ss_pred             hHHHHHHHHhcCcccc-cchh--hhccccceeeeeeccccc----c--------------------cCCH-HHHhchHHh
Confidence            4456666665544332 3333  455666677777755555    2                    2222 455577889


Q ss_pred             ceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccce
Q 036801          228 VILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEV  307 (388)
Q Consensus       228 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~  307 (388)
                      ++|+++|+ +++.+|.....+..|++|...+ +.+..+|..   ..++.|+.+|+ +|+.+.++......          
T Consensus       410 eeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~---~~l~qL~~lDl-S~N~L~~~~l~~~~----------  473 (1081)
T KOG0618|consen  410 EELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFPEL---AQLPQLKVLDL-SCNNLSEVTLPEAL----------  473 (1081)
T ss_pred             HHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeechhh---hhcCcceEEec-ccchhhhhhhhhhC----------
Confidence            99999887 7888887778888888886653 567777753   37889999999 78888877644322          


Q ss_pred             ecccccceeecccccc
Q 036801          308 IAFSKLNELRLLNLES  323 (388)
Q Consensus       308 ~~~~~L~~L~l~~c~~  323 (388)
                       +-++|++|++++.+.
T Consensus       474 -p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  474 -PSPNLKYLDLSGNTR  488 (1081)
T ss_pred             -CCcccceeeccCCcc
Confidence             127899999988654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.15  E-value=1.2e-12  Score=104.69  Aligned_cols=153  Identities=20%  Similarity=0.272  Sum_probs=122.2

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      .+.++++|.++++ .++.+ |+.++   .+.+|+.|+++++ +++++|..         +..+++|+.|.+. ++++...
T Consensus        31 ~~s~ITrLtLSHN-Kl~~v-ppnia---~l~nlevln~~nn-qie~lp~~---------issl~klr~lnvg-mnrl~~l   94 (264)
T KOG0617|consen   31 NMSNITRLTLSHN-KLTVV-PPNIA---ELKNLEVLNLSNN-QIEELPTS---------ISSLPKLRILNVG-MNRLNIL   94 (264)
T ss_pred             chhhhhhhhcccC-ceeec-CCcHH---Hhhhhhhhhcccc-hhhhcChh---------hhhchhhhheecc-hhhhhcC
Confidence            4567889999985 57766 55689   8999999999998 79998887         7889999999996 6788888


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeecccccc
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFVDE  161 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~~~  161 (388)
                      |.+   +++||.|++|+++++..-+..-+..+     -.+..|+.|.++.+..    ..+|.  +.+++||.|.+.++.-
T Consensus        95 prg---fgs~p~levldltynnl~e~~lpgnf-----f~m~tlralyl~dndf----e~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen   95 PRG---FGSFPALEVLDLTYNNLNENSLPGNF-----FYMTTLRALYLGDNDF----EILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             ccc---cCCCchhhhhhccccccccccCCcch-----hHHHHHHHHHhcCCCc----ccCChhhhhhcceeEEeeccCch
Confidence            888   78999999999999843333323322     3678889999988876    55666  4588999999998876


Q ss_pred             ccccccchhHhhcCCCccEEEEEeccC
Q 036801          162 LTTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       162 ~~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                      ++   .|. .++.++.|+.|.|.+|.+
T Consensus       163 l~---lpk-eig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  163 LS---LPK-EIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hh---CcH-HHHHHHHHHHHhccccee
Confidence            65   554 788899999999977777

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.04  E-value=1.2e-10  Score=119.50  Aligned_cols=118  Identities=23%  Similarity=0.352  Sum_probs=57.9

Q ss_pred             CccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeecccccccccc-ccCCCCCcccc
Q 036801          225 DNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIV-LADDDDDHDAA  303 (388)
Q Consensus       225 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~-~~~~~~~~~~~  303 (388)
                      +++..+.+.+|.....+ .+..-.++|+.|.+.+|..+.+....  ...+..+.++.+ .++.+.... ....+ +-...
T Consensus       747 ~~l~~~~~~~~~~~r~l-~~~~f~~~L~~l~l~~~~~~e~~i~~--~k~~~~l~~~i~-~f~~~~~l~~~~~l~-~l~~i  821 (889)
T KOG4658|consen  747 PNLSKVSILNCHMLRDL-TWLLFAPHLTSLSLVSCRLLEDIIPK--LKALLELKELIL-PFNKLEGLRMLCSLG-GLPQL  821 (889)
T ss_pred             HHHHHHHhhcccccccc-chhhccCcccEEEEecccccccCCCH--HHHhhhcccEEe-cccccccceeeecCC-CCcee
Confidence            45666666666555443 33345567778877777666655432  123333333222 111111110 00000 00000


Q ss_pred             ccceecccccceeecccccccceeccCcccccCCCcceEeccCC-cccccCCCC
Q 036801          304 KDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDC-TNMEIFSRG  356 (388)
Q Consensus       304 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c-~~l~~l~~~  356 (388)
                      +.....++.|+.+.+..|+++.         .+|.+.++.+.+| +.+...|.+
T Consensus       822 ~~~~l~~~~l~~~~ve~~p~l~---------~~P~~~~~~i~~~~~~~~~~~~~  866 (889)
T KOG4658|consen  822 YWLPLSFLKLEELIVEECPKLG---------KLPLLSTLTIVGCEEKLKEYPDG  866 (889)
T ss_pred             EecccCccchhheehhcCcccc---------cCccccccceeccccceeecCCc
Confidence            1111234557777777776544         4566677788886 667777664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.99  E-value=2.7e-11  Score=109.02  Aligned_cols=225  Identities=13%  Similarity=0.152  Sum_probs=133.5

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      .-+.+.+.. +.++.++|.+|.   .+++||+|||++| +++.|....        +..++.|..|.+.+.+++++++.+
T Consensus        68 ~tveirLdq-N~I~~iP~~aF~---~l~~LRrLdLS~N-~Is~I~p~A--------F~GL~~l~~Lvlyg~NkI~~l~k~  134 (498)
T KOG4237|consen   68 ETVEIRLDQ-NQISSIPPGAFK---TLHRLRRLDLSKN-NISFIAPDA--------FKGLASLLSLVLYGNNKITDLPKG  134 (498)
T ss_pred             cceEEEecc-CCcccCChhhcc---chhhhceeccccc-chhhcChHh--------hhhhHhhhHHHhhcCCchhhhhhh
Confidence            456788887 578899888888   8999999999998 677776653        556778888888887889988877


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccc----------------------------
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITT----------------------------  138 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~----------------------------  138 (388)
                      .  ++.+.+|+.|.+.-| ++.-+....+     ..+++|..|.+.++.+-.                            
T Consensus       135 ~--F~gL~slqrLllNan-~i~Cir~~al-----~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  135 A--FGGLSSLQRLLLNAN-HINCIRQDAL-----RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             H--hhhHHHHHHHhcChh-hhcchhHHHH-----HHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence            5  566666666655433 2222222222     233333333333322200                            


Q ss_pred             ----------------------------cccccchhhc-cCccEe--eccccccccccccchhHhhcCCCccEEEEEecc
Q 036801          139 ----------------------------NKFLFSKDLL-CKLKCL--DVEFVDELTTILSLDDFLQRFHTLKVLQIEGYN  187 (388)
Q Consensus       139 ----------------------------~~~~lp~~~l-~~L~~L--~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  187 (388)
                                                  .+..+....+ ..++.+  .+....... ...|...++.+++|++|++++|+
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d-~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPD-SICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcC-CcChHHHHhhcccceEeccCCCc
Confidence                                        0000000000 012222  111111222 45666778999999999998888


Q ss_pred             CCCCceeecCccccccce-eeeee---ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEec
Q 036801          188 YWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISH  258 (388)
Q Consensus       188 l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~  258 (388)
                      +    +.+.++.|..+.+ .++.+   .+..+.. ..+..+..|+.|+++++...+-.|..+.....|..|.+-.
T Consensus       286 i----~~i~~~aFe~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  286 I----TRIEDGAFEGAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             c----chhhhhhhcchhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence            8    4455555555544 34444   5555554 6677778888888888743333344556667777777743

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.86  E-value=3.9e-10  Score=104.46  Aligned_cols=94  Identities=17%  Similarity=0.045  Sum_probs=45.9

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc------CCCcccccCCCccEEEeecCC
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS------TGDVHMLEFPSLKELWISRCP  105 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~------~~~~~~~~~~~L~~L~l~~c~  105 (388)
                      .+++|++|++++|. ++.....    .....+...+.|+.+.+.++. +...+      ...  ...+++|++|++++|.
T Consensus        21 ~l~~L~~l~l~~~~-l~~~~~~----~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~   92 (319)
T cd00116          21 KLLCLQVLRLEGNT-LGEEAAK----ALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQG--LTKGCGLQELDLSDNA   92 (319)
T ss_pred             HHhhccEEeecCCC-CcHHHHH----HHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHH--HHhcCceeEEEccCCC
Confidence            67778888888873 3221000    000014456667777776542 22100      011  2346678888887774


Q ss_pred             CceEecccccCCccccccCCccEEEEeecCc
Q 036801          106 GFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus       106 ~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                      .-...+...  ...... ++|++|++++|..
T Consensus        93 ~~~~~~~~~--~~l~~~-~~L~~L~ls~~~~  120 (319)
T cd00116          93 LGPDGCGVL--ESLLRS-SSLQELKLNNNGL  120 (319)
T ss_pred             CChhHHHHH--HHHhcc-CcccEEEeeCCcc
Confidence            322111111  001122 4477777777655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.69  E-value=2.8e-10  Score=91.29  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=20.2

Q ss_pred             cCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEec
Q 036801          219 ESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISH  258 (388)
Q Consensus       219 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~  258 (388)
                      ..++.+++|+.|.+.++ .+-++|..++.++.|+.|+|.+
T Consensus       144 ~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  144 PDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhccc
Confidence            34445555555555554 3344555555555555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.67  E-value=1.5e-09  Score=97.87  Aligned_cols=251  Identities=17%  Similarity=0.140  Sum_probs=148.0

Q ss_pred             ccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEee-cCccccccccchh
Q 036801           68 RLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDA-KYITTNKFLFSKD  146 (388)
Q Consensus        68 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~-~~~~~~~~~lp~~  146 (388)
                      .-..+++.. +.++.+|++.  ++.+++|++|+++++ +++.+.+..+     +.+++|.+|.+.+ |++    ..+|.+
T Consensus        68 ~tveirLdq-N~I~~iP~~a--F~~l~~LRrLdLS~N-~Is~I~p~AF-----~GL~~l~~Lvlyg~NkI----~~l~k~  134 (498)
T KOG4237|consen   68 ETVEIRLDQ-NQISSIPPGA--FKTLHRLRRLDLSKN-NISFIAPDAF-----KGLASLLSLVLYGNNKI----TDLPKG  134 (498)
T ss_pred             cceEEEecc-CCcccCChhh--ccchhhhceeccccc-chhhcChHhh-----hhhHhhhHHHhhcCCch----hhhhhh
Confidence            455677765 5788999887  888999999999988 7887777776     7888888888888 555    667776


Q ss_pred             h---ccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCC
Q 036801          147 L---LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSI  223 (388)
Q Consensus       147 ~---l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~  223 (388)
                      .   +..|+.|.+.-++..   -.+...+..+++|..|.+..+.+    ..++.+.+.                     .
T Consensus       135 ~F~gL~slqrLllNan~i~---Cir~~al~dL~~l~lLslyDn~~----q~i~~~tf~---------------------~  186 (498)
T KOG4237|consen  135 AFGGLSSLQRLLLNANHIN---CIRQDALRDLPSLSLLSLYDNKI----QSICKGTFQ---------------------G  186 (498)
T ss_pred             HhhhHHHHHHHhcChhhhc---chhHHHHHHhhhcchhcccchhh----hhhcccccc---------------------c
Confidence            5   445666665544322   24556788899999888855555    334433322                     2


Q ss_pred             CCccceEEecCCcccc------------ccCCCCC---------------------CC-CCcCEE---EEecCCCceeec
Q 036801          224 MDNLVILRVSSCHHLI------------NLVPSST---------------------SF-QNLTTL---EISHCNGLKNVL  266 (388)
Q Consensus       224 l~~L~~L~l~~c~~l~------------~l~~~~~---------------------~~-~~L~~L---~l~~c~~l~~~~  266 (388)
                      +..++.+.+..++.+.            ..+....                     .| -.++.+   ..+.| ......
T Consensus       187 l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-~~d~~c  265 (498)
T KOG4237|consen  187 LAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED-FPDSIC  265 (498)
T ss_pred             hhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc-CcCCcC
Confidence            2233333332222110            0000000                     00 012222   11222 222222


Q ss_pred             chhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccC
Q 036801          267 TFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDD  346 (388)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~  346 (388)
                      +...++.+++|++|+++ .+.+++|....           +-...++++|.+.. .+++.+..+. +..+..|+.|.+.+
T Consensus       266 P~~cf~~L~~L~~lnls-nN~i~~i~~~a-----------Fe~~a~l~eL~L~~-N~l~~v~~~~-f~~ls~L~tL~L~~  331 (498)
T KOG4237|consen  266 PAKCFKKLPNLRKLNLS-NNKITRIEDGA-----------FEGAAELQELYLTR-NKLEFVSSGM-FQGLSGLKTLSLYD  331 (498)
T ss_pred             hHHHHhhcccceEeccC-CCccchhhhhh-----------hcchhhhhhhhcCc-chHHHHHHHh-hhccccceeeeecC
Confidence            33356678899999994 45676663221           11246777777766 3577776665 56778888888887


Q ss_pred             CcccccCC-CCCcCCCCcceEEEeccCCccccc
Q 036801          347 CTNMEIFS-RGELSTPMLHKVQLNMWDEACWAW  378 (388)
Q Consensus       347 c~~l~~l~-~~~~~~~~L~~l~l~~~~~~~~~~  378 (388)
                       ++++.+. ..+.....|.++.+-   ++.|.+
T Consensus       332 -N~it~~~~~aF~~~~~l~~l~l~---~Np~~C  360 (498)
T KOG4237|consen  332 -NQITTVAPGAFQTLFSLSTLNLL---SNPFNC  360 (498)
T ss_pred             -CeeEEEecccccccceeeeeehc---cCcccC
Confidence             4565543 334455777777776   555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=5.4e-09  Score=95.59  Aligned_cols=160  Identities=18%  Similarity=0.234  Sum_probs=76.9

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      ++.+|+.+.+.+|.. ...+-....+  .|++++.|||+++ -+..|-.--      .-+..+|+|+.|.++. +++...
T Consensus       119 n~kkL~~IsLdn~~V-~~~~~~~~~k--~~~~v~~LdLS~N-L~~nw~~v~------~i~eqLp~Le~LNls~-Nrl~~~  187 (505)
T KOG3207|consen  119 NLKKLREISLDNYRV-EDAGIEEYSK--ILPNVRDLDLSRN-LFHNWFPVL------KIAEQLPSLENLNLSS-NRLSNF  187 (505)
T ss_pred             hHHhhhheeecCccc-cccchhhhhh--hCCcceeecchhh-hHHhHHHHH------HHHHhcccchhccccc-ccccCC
Confidence            455666666665532 2111111222  5666666666665 222221110      0044566666666665 334332


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccc
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELT  163 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~  163 (388)
                      .... ....++.|+.|.+++| .++.-  ..  +.+...+|+|+.|.+..|... .+...+...++.|+.|+++++..+.
T Consensus       188 ~~s~-~~~~l~~lK~L~l~~C-Gls~k--~V--~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~  260 (505)
T KOG3207|consen  188 ISSN-TTLLLSHLKQLVLNSC-GLSWK--DV--QWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLID  260 (505)
T ss_pred             cccc-chhhhhhhheEEeccC-CCCHH--HH--HHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccc
Confidence            2221 2334666777777666 33210  00  112245666777766665321 2244455556666666666665554


Q ss_pred             ccccchhHhhcCCCccEEEE
Q 036801          164 TILSLDDFLQRFHTLKVLQI  183 (388)
Q Consensus       164 ~~~~~~~~~~~l~~L~~L~l  183 (388)
                      ++..+  .+..++.|..|.+
T Consensus       261 ~~~~~--~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  261 FDQGY--KVGTLPGLNQLNL  278 (505)
T ss_pred             ccccc--ccccccchhhhhc
Confidence            11111  3445666666666

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.61  E-value=2.5e-09  Score=98.97  Aligned_cols=146  Identities=16%  Similarity=0.039  Sum_probs=76.5

Q ss_pred             CCCcccEEeEecCCCCcc---cccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRC---LFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKL   80 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~---~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l   80 (388)
                      .+.+|+.|.+++|.....   ..+..+.   ..+++++++++++. +...+..  .......+..+++|+.|++.+++ +
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~---~~~~l~~l~l~~~~-~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~~-~   93 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALR---PQPSLKELCLSLNE-TGRIPRG--LQSLLQGLTKGCGLQELDLSDNA-L   93 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHh---hCCCceEEeccccc-cCCcchH--HHHHHHHHHhcCceeEEEccCCC-C
Confidence            456799999999763111   1133333   67789999998873 2211110  00001114568899999999864 4


Q ss_pred             ccccCCCcccccC---CCccEEEeecCCCceEecccccCCcccccc-CCccEEEEeecCccccc-cccch--hhccCccE
Q 036801           81 TSFSTGDVHMLEF---PSLKELWISRCPGFMVKFKRTTNDLTKKVF-PNLEELIVDAKYITTNK-FLFSK--DLLCKLKC  153 (388)
Q Consensus        81 ~~~~~~~~~~~~~---~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~~~~-~~lp~--~~l~~L~~  153 (388)
                      .......  +..+   ++|++|++++|. +......... .....+ ++|+.|++.+|.+.... ..++.  ..+++|++
T Consensus        94 ~~~~~~~--~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~-~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~  169 (319)
T cd00116          94 GPDGCGV--LESLLRSSSLQELKLNNNG-LGDRGLRLLA-KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE  169 (319)
T ss_pred             ChhHHHH--HHHHhccCcccEEEeeCCc-cchHHHHHHH-HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCE
Confidence            3211111  2223   559999999984 4321111000 001244 78888888887763110 01111  12345666


Q ss_pred             eeccccc
Q 036801          154 LDVEFVD  160 (388)
Q Consensus       154 L~l~~~~  160 (388)
                      |+++++.
T Consensus       170 L~l~~n~  176 (319)
T cd00116         170 LNLANNG  176 (319)
T ss_pred             EECcCCC
Confidence            6666543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=9.9e-09  Score=93.88  Aligned_cols=210  Identities=18%  Similarity=0.213  Sum_probs=124.8

Q ss_pred             ccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEe
Q 036801           31 SSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVK  110 (388)
Q Consensus        31 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  110 (388)
                      +++.+|+.+.|+++ .+......++       ...|++++.|+++.. -+.+|....-.+..+|+|++|+++.+. +...
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~~~-------~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~  187 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIEEY-------SKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNF  187 (505)
T ss_pred             hhHHhhhheeecCc-cccccchhhh-------hhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCC
Confidence            37889999999998 3554443222       668999999999863 233332211014569999999998873 3222


Q ss_pred             cccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCC
Q 036801          111 FKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWL  190 (388)
Q Consensus       111 ~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  190 (388)
                      ..+.    .+..+++|..|.++.|.+...-..--...+|+|+.|.+..+....   .......-+..|+.|+++.|.+  
T Consensus       188 ~~s~----~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~---~~~~~~~i~~~L~~LdLs~N~l--  258 (505)
T KOG3207|consen  188 ISSN----TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL---IKATSTKILQTLQELDLSNNNL--  258 (505)
T ss_pred             cccc----chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc---eecchhhhhhHHhhccccCCcc--
Confidence            1111    124678999999999987421111122348999999999874332   1112334567899999954444  


Q ss_pred             CceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccc-cccCCC-----CCCCCCcCEEEEecCCCcee
Q 036801          191 PKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHL-INLVPS-----STSFQNLTTLEISHCNGLKN  264 (388)
Q Consensus       191 ~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l-~~l~~~-----~~~~~~L~~L~l~~c~~l~~  264 (388)
                        -.++.+                    ...+.++.|..|+++.|..- -..|+.     ...|++|++|.+.. +++.+
T Consensus       259 --i~~~~~--------------------~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~  315 (505)
T KOG3207|consen  259 --IDFDQG--------------------YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRD  315 (505)
T ss_pred             --cccccc--------------------cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Ccccc
Confidence              111110                    34456677777777776321 112222     24677888888875 45555


Q ss_pred             ecchhhhhccCccCEEee
Q 036801          265 VLTFLIAKTLVRLREMKI  282 (388)
Q Consensus       265 ~~~~~~~~~~~~L~~L~l  282 (388)
                      ++...-...+++|+.|.+
T Consensus       316 w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  316 WRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             ccccchhhccchhhhhhc
Confidence            554333345566666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.48  E-value=1.3e-07  Score=78.63  Aligned_cols=130  Identities=21%  Similarity=0.187  Sum_probs=41.6

Q ss_pred             cccccceeeccccccccEeeecccccccccccc-cccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEe
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIV-IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVK  110 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  110 (388)
                      +...+++|+|+++ .+..+..          ++ .+.+|+.|+++++ .++.+..    +..++.|+.|+++++ .++.+
T Consensus        17 n~~~~~~L~L~~n-~I~~Ie~----------L~~~l~~L~~L~Ls~N-~I~~l~~----l~~L~~L~~L~L~~N-~I~~i   79 (175)
T PF14580_consen   17 NPVKLRELNLRGN-QISTIEN----------LGATLDKLEVLDLSNN-QITKLEG----LPGLPRLKTLDLSNN-RISSI   79 (175)
T ss_dssp             --------------------S------------TT-TT--EEE-TTS---S--TT--------TT--EEE--SS----S-
T ss_pred             ccccccccccccc-ccccccc----------hhhhhcCCCEEECCCC-CCccccC----ccChhhhhhcccCCC-CCCcc
Confidence            3445677777776 3444321          22 4566777777653 4555532    224677777777766 44444


Q ss_pred             cccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEE
Q 036801          111 FKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI  183 (388)
Q Consensus       111 ~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  183 (388)
                      .....     ..+|+|++|.+++|.+..--...+...+++|+.|++.+++..........++..+|+|+.|+-
T Consensus        80 ~~~l~-----~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   80 SEGLD-----KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             CHHHH-----HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             ccchH-----HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            22111     246777777777766532111124455777777777776544312234457778888888775

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.42  E-value=9.3e-08  Score=79.41  Aligned_cols=134  Identities=21%  Similarity=0.279  Sum_probs=51.6

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      +..+++.|++.|+ .++.+  +.++.  .+.+|+.|++++| .++.+..          +..+++|+.|++.+ +.+.++
T Consensus        17 n~~~~~~L~L~~n-~I~~I--e~L~~--~l~~L~~L~Ls~N-~I~~l~~----------l~~L~~L~~L~L~~-N~I~~i   79 (175)
T PF14580_consen   17 NPVKLRELNLRGN-QISTI--ENLGA--TLDKLEVLDLSNN-QITKLEG----------LPGLPRLKTLDLSN-NRISSI   79 (175)
T ss_dssp             ----------------------S--T--T-TT--EEE-TTS---S--TT--------------TT--EEE--S-S---S-
T ss_pred             ccccccccccccc-ccccc--cchhh--hhcCCCEEECCCC-CCccccC----------ccChhhhhhcccCC-CCCCcc
Confidence            3456899999995 56654  44653  5889999999999 5766532          55789999999986 578877


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccc--ccccchhhccCccEeecccccc
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTN--KFLFSKDLLCKLKCLDVEFVDE  161 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~--~~~lp~~~l~~L~~L~l~~~~~  161 (388)
                      ....  ...+|+|++|.++++ .+..+..-..    -..+++|+.|++.+|.+...  ...+-...+|+|+.||-.....
T Consensus        80 ~~~l--~~~lp~L~~L~L~~N-~I~~l~~l~~----L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen   80 SEGL--DKNLPNLQELYLSNN-KISDLNELEP----LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             CHHH--HHH-TT--EEE-TTS----SCCCCGG----GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred             ccch--HHhCCcCCEEECcCC-cCCChHHhHH----HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence            5431  235899999999887 5544322110    15789999999999877421  1123335589999999876543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.1e-08  Score=89.17  Aligned_cols=187  Identities=19%  Similarity=0.161  Sum_probs=114.7

Q ss_pred             CCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEE-EeccCCCCceeecCccccc
Q 036801          124 PNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI-EGYNYWLPKEKVENGVEVI  202 (388)
Q Consensus       124 ~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~~~~  202 (388)
                      ..|++|++++..+..+-...-..-|++|+.|.+.+.. ++ +.+. ..+..-.+|+.+++ .|+.+   ++.   +..  
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-Ld-D~I~-~~iAkN~~L~~lnlsm~sG~---t~n---~~~--  253 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LD-DPIV-NTIAKNSNLVRLNLSMCSGF---TEN---ALQ--  253 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cC-cHHH-HHHhccccceeecccccccc---chh---HHH--
Confidence            3577888877655321111122336788888887754 22 2222 24556678888888 77776   221   000  


Q ss_pred             cceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC--CCCCCcCEEEEecCCC-ceeecchhhhhccCccCE
Q 036801          203 IREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS--TSFQNLTTLEISHCNG-LKNVLTFLIAKTLVRLRE  279 (388)
Q Consensus       203 L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~~L~~L~l~~c~~-l~~~~~~~~~~~~~~L~~  279 (388)
                                      ..+.+++.|.+|+++-|...+.....+  .--++|+.|.+++|.. +..-......+.+|+|.+
T Consensus       254 ----------------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~  317 (419)
T KOG2120|consen  254 ----------------LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH  317 (419)
T ss_pred             ----------------HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence                            234577889999998886654433222  2345788889988743 222222335667899999


Q ss_pred             EeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcc
Q 036801          280 MKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTN  349 (388)
Q Consensus       280 L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~  349 (388)
                      ||+++|..++.-....           +..|+.|++|+++.|..+..--.- .+.+.|+|.+|++.+|-.
T Consensus       318 LDLSD~v~l~~~~~~~-----------~~kf~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  318 LDLSDSVMLKNDCFQE-----------FFKFNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             eccccccccCchHHHH-----------HHhcchheeeehhhhcCCChHHee-eeccCcceEEEEeccccC
Confidence            9999998776532211           346899999999999764422111 125679999999988763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=2.5e-08  Score=87.07  Aligned_cols=184  Identities=18%  Similarity=0.214  Sum_probs=122.4

Q ss_pred             ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801           35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT  114 (388)
Q Consensus        35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  114 (388)
                      .|++|||++.. ++. ......      +..|.+|+.|.+.+. .+.+-....  ++.-.+|+.|+++.|..++......
T Consensus       186 Rlq~lDLS~s~-it~-stl~~i------Ls~C~kLk~lSlEg~-~LdD~I~~~--iAkN~~L~~lnlsm~sG~t~n~~~l  254 (419)
T KOG2120|consen  186 RLQHLDLSNSV-ITV-STLHGI------LSQCSKLKNLSLEGL-RLDDPIVNT--IAKNSNLVRLNLSMCSGFTENALQL  254 (419)
T ss_pred             hhHHhhcchhh-eeH-HHHHHH------HHHHHhhhhcccccc-ccCcHHHHH--HhccccceeeccccccccchhHHHH
Confidence            59999998741 211 110000      557899999999875 455433222  5567899999999998887654432


Q ss_pred             cCCccccccCCccEEEEeecCccccccc-cchhhccCccEeeccccccc-cccccchhHhhcCCCccEEEE-EeccCCCC
Q 036801          115 TNDLTKKVFPNLEELIVDAKYITTNKFL-FSKDLLCKLKCLDVEFVDEL-TTILSLDDFLQRFHTLKVLQI-EGYNYWLP  191 (388)
Q Consensus       115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~-lp~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l-~~~~l~~~  191 (388)
                      .    -.++..|..|++++|...+.... .....-++|+.|+++++... .++.+ +-..+.+++|..|++ +|..+   
T Consensus       255 l----~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l---  326 (419)
T KOG2120|consen  255 L----LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVML---  326 (419)
T ss_pred             H----HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeecccccccc---
Confidence            2    26889999999999987543322 22234679999999987642 21111 124678999999999 77766   


Q ss_pred             ceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccc-cCCCCCCCCCcCEEEEecC
Q 036801          192 KEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN-LVPSSTSFQNLTTLEISHC  259 (388)
Q Consensus       192 ~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c  259 (388)
                      +.    +.+                  +.+-.++-|++|.+++|..+.. ..-.+...|.|.+|++.+|
T Consensus       327 ~~----~~~------------------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  327 KN----DCF------------------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             Cc----hHH------------------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            32    111                  3444678899999999977631 1234577889999999887

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.11  E-value=5.8e-06  Score=56.14  Aligned_cols=37  Identities=27%  Similarity=0.428  Sum_probs=16.3

Q ss_pred             cccccceEecccccccccccCCCcccccCCCccEEEeecC
Q 036801           65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC  104 (388)
Q Consensus        65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  104 (388)
                      .+++|++|++++ ++++.+++..  +..+++|+.|++++|
T Consensus        23 ~l~~L~~L~l~~-N~l~~i~~~~--f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   23 NLPNLETLDLSN-NNLTSIPPDA--FSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TGTTESEEEETS-SSESEEETTT--TTTSTTESEEEETSS
T ss_pred             CCCCCCEeEccC-CccCccCHHH--HcCCCCCCEEeCcCC
Confidence            344444444443 2344444432  344444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.10  E-value=5.9e-06  Score=56.13  Aligned_cols=59  Identities=20%  Similarity=0.276  Sum_probs=50.2

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccc
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDL   77 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~   77 (388)
                      |+|++|++++| .++.+++.+|.   ++++|++|++++| .+..++...        +..+++|++|++.++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~---~l~~L~~L~l~~N-~l~~i~~~~--------f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFS---NLPNLETLDLSNN-NLTSIPPDA--------FSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTT---TGTTESEEEETSS-SESEEETTT--------TTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHc---CCCCCCEeEccCC-ccCccCHHH--------HcCCCCCCEEeCcCC
Confidence            68999999996 78888777788   8999999999988 678877652        678999999999875

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.98  E-value=7.4e-06  Score=78.29  Aligned_cols=171  Identities=22%  Similarity=0.292  Sum_probs=99.2

Q ss_pred             cccccceeeccccccccEeeeccccccccccccccc-ccceEecccccccccccCCCcccccCCCccEEEeecCCCceEe
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFP-RLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVK  110 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  110 (388)
                      .++.++.|++.++ .+.+++..         ...+. +|+.|++.+ +.++.++..   ...+++|+.|++.+| .+..+
T Consensus       114 ~~~~l~~L~l~~n-~i~~i~~~---------~~~~~~nL~~L~l~~-N~i~~l~~~---~~~l~~L~~L~l~~N-~l~~l  178 (394)
T COG4886         114 ELTNLTSLDLDNN-NITDIPPL---------IGLLKSNLKELDLSD-NKIESLPSP---LRNLPNLKNLDLSFN-DLSDL  178 (394)
T ss_pred             cccceeEEecCCc-ccccCccc---------cccchhhcccccccc-cchhhhhhh---hhccccccccccCCc-hhhhh
Confidence            4556777777666 45555554         33442 777777775 456665322   345777777777776 55545


Q ss_pred             cccccCCccccccCCccEEEEeecCccccccccchh--hccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801          111 FKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD--LLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       111 ~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                      +...      ...++|+.|+++++.+    ..+|..  ....|+++.++++....   .+. .+..+.++..+.+..+.+
T Consensus       179 ~~~~------~~~~~L~~L~ls~N~i----~~l~~~~~~~~~L~~l~~~~N~~~~---~~~-~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         179 PKLL------SNLSNLNNLDLSGNKI----SDLPPEIELLSALEELDLSNNSIIE---LLS-SLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             hhhh------hhhhhhhheeccCCcc----ccCchhhhhhhhhhhhhhcCCccee---cch-hhhhcccccccccCCcee
Confidence            4432      1567777777777766    556664  44557777777764332   111 345555555555533443


Q ss_pred             CCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecC
Q 036801          189 WLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHC  259 (388)
Q Consensus       189 ~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c  259 (388)
                         .. ++                      ..+..+++++.|+++++ .+..++. +....+++.+++++.
T Consensus       245 ---~~-~~----------------------~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         245 ---ED-LP----------------------ESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             ---ee-cc----------------------chhccccccceeccccc-ccccccc-ccccCccCEEeccCc
Confidence               11 01                      44445666777777665 4455544 666677777777653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.94  E-value=7.3e-07  Score=87.36  Aligned_cols=139  Identities=19%  Similarity=0.123  Sum_probs=62.4

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccc-ccccccc--CCCcccccCCCccEEEeecCCCce
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDL-EKLTSFS--TGDVHMLEFPSLKELWISRCPGFM  108 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~l~~~~--~~~~~~~~~~~L~~L~l~~c~~l~  108 (388)
                      .+++|+.|.+.+|..+......       +....+++|+.|++.++ ......+  ... ....+++|+.|++.+|..++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~is  257 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLD-------ALALKCPNLEELDLSGCCLLITLSPLLLLL-LLSICRKLKSLDLSGCGLVT  257 (482)
T ss_pred             hCchhhHhhhcccccCChhhHH-------HHHhhCchhheecccCcccccccchhHhhh-hhhhcCCcCccchhhhhccC
Confidence            3555666666665444441100       00334566666666542 1111111  000 12335666666666665444


Q ss_pred             EecccccCCccccccCCccEEEEeecCccc-cccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEE
Q 036801          109 VKFKRTTNDLTKKVFPNLEELIVDAKYITT-NKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI  183 (388)
Q Consensus       109 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~-~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  183 (388)
                      +......    ...+++|+.|.+.+|..++ .....-...+++|++|++++|..+. +........++++|+.|.+
T Consensus       258 d~~l~~l----~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~-d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  258 DIGLSAL----ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT-DSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             chhHHHH----HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch-HHHHHHHHHhCcchhhhhh
Confidence            3222211    1235566666655544211 1011111235667777777666654 2222223555666666665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.93  E-value=5.3e-07  Score=88.33  Aligned_cols=120  Identities=21%  Similarity=0.157  Sum_probs=78.7

Q ss_pred             cccccceEecccccccccccCCCcccccCCCccEEEeecC-CCceEecccccCCccccccCCccEEEEeecCccccc-cc
Q 036801           65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC-PGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNK-FL  142 (388)
Q Consensus        65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~-~~  142 (388)
                      .++.|+.|.+.+|..+....... ....+++|+.|++++| ......+...  ......+++|+.+++..+..++.. ..
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDA-LALKCPNLEELDLSGCCLLITLSPLLL--LLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHH-HHhhCchhheecccCcccccccchhHh--hhhhhhcCCcCccchhhhhccCchhHH
Confidence            47999999999888777632111 1457999999999884 3322222111  012256789999999987743221 11


Q ss_pred             cchhhccCccEeeccccccccccccchhHhhcCCCccEEEE-EeccC
Q 036801          143 FSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI-EGYNY  188 (388)
Q Consensus       143 lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l  188 (388)
                      .-...+++|+.|.+..|..++ +.........+++|+.|++ .|..+
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt-~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLT-DEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHHhhCCCcceEccCCCCccc-hhHHHHHHHhcCcccEEeeecCccc
Confidence            122338899999988888665 4444457778899999999 77665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.83  E-value=4.5e-06  Score=73.34  Aligned_cols=101  Identities=17%  Similarity=0.158  Sum_probs=51.4

Q ss_pred             ccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCcc
Q 036801          148 LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNL  227 (388)
Q Consensus       148 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L  227 (388)
                      ++.|++++++++..-.   +. ..++-.|.++.|+++.|.+   ..+                        +.+..+++|
T Consensus       283 Wq~LtelDLS~N~I~~---iD-ESvKL~Pkir~L~lS~N~i---~~v------------------------~nLa~L~~L  331 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ---ID-ESVKLAPKLRRLILSQNRI---RTV------------------------QNLAELPQL  331 (490)
T ss_pred             Hhhhhhccccccchhh---hh-hhhhhccceeEEeccccce---eee------------------------hhhhhcccc
Confidence            4456666666543222   21 2455566666666654554   211                        334455666


Q ss_pred             ceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeecc
Q 036801          228 VILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIES  284 (388)
Q Consensus       228 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~  284 (388)
                      ++|+++++ .+..+..|-..+-+.++|.+++ +.++++..   .+.+=+|..|++++
T Consensus       332 ~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSG---L~KLYSLvnLDl~~  383 (490)
T KOG1259|consen  332 QLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ-NKIETLSG---LRKLYSLVNLDLSS  383 (490)
T ss_pred             eEeecccc-hhHhhhhhHhhhcCEeeeehhh-hhHhhhhh---hHhhhhheeccccc
Confidence            66666654 3444444445555666666654 23443322   23445566666644

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.74  E-value=8.9e-05  Score=69.45  Aligned_cols=57  Identities=21%  Similarity=0.322  Sum_probs=27.3

Q ss_pred             CccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccc
Q 036801          225 DNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMIT  289 (388)
Q Consensus       225 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  289 (388)
                      ++++.|++++| .++.+|.   -..+|+.|.+++|.++..+|..    -.++|+.|.+.+|..+.
T Consensus        52 ~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~----LP~nLe~L~Ls~Cs~L~  108 (426)
T PRK15386         52 RASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGS----IPEGLEKLTVCHCPEIS  108 (426)
T ss_pred             cCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCch----hhhhhhheEccCccccc
Confidence            45555555555 4444431   1224555555555555444431    12355555555554443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.74  E-value=2.4e-05  Score=74.75  Aligned_cols=178  Identities=19%  Similarity=0.156  Sum_probs=124.7

Q ss_pred             CCCcccEEeEecCCCCccccccccccccccc-ccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFV-RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      .+..++.|.+.+ ..++++ +...+   .++ +|++|++.++ .+..++..         +..+++|+.|++..+ .+.+
T Consensus       114 ~~~~l~~L~l~~-n~i~~i-~~~~~---~~~~nL~~L~l~~N-~i~~l~~~---------~~~l~~L~~L~l~~N-~l~~  177 (394)
T COG4886         114 ELTNLTSLDLDN-NNITDI-PPLIG---LLKSNLKELDLSDN-KIESLPSP---------LRNLPNLKNLDLSFN-DLSD  177 (394)
T ss_pred             cccceeEEecCC-cccccC-ccccc---cchhhccccccccc-chhhhhhh---------hhccccccccccCCc-hhhh
Confidence            345688888886 456666 44455   453 8999999998 57776533         678999999999974 6888


Q ss_pred             ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccc
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDEL  162 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~  162 (388)
                      ++..   ....++|+.|+++++ .+..++...      ....+|+++.+.++....  ...+...+.++..+.+......
T Consensus       178 l~~~---~~~~~~L~~L~ls~N-~i~~l~~~~------~~~~~L~~l~~~~N~~~~--~~~~~~~~~~l~~l~l~~n~~~  245 (394)
T COG4886         178 LPKL---LSNLSNLNNLDLSGN-KISDLPPEI------ELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNKLE  245 (394)
T ss_pred             hhhh---hhhhhhhhheeccCC-ccccCchhh------hhhhhhhhhhhcCCccee--cchhhhhcccccccccCCceee
Confidence            8765   335899999999988 777776653      244559999999885310  2223455777777776655433


Q ss_pred             cccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccc
Q 036801          163 TTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN  240 (388)
Q Consensus       163 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~  240 (388)
                      .   ++ ..+..+++++.|++.++.+   ..+                        ..+..+.+++.|++.+......
T Consensus       246 ~---~~-~~~~~l~~l~~L~~s~n~i---~~i------------------------~~~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         246 D---LP-ESIGNLSNLETLDLSNNQI---SSI------------------------SSLGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             e---cc-chhccccccceeccccccc---ccc------------------------ccccccCccCEEeccCcccccc
Confidence            2   12 3677889999999977776   221                        3356778999999988754443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.69  E-value=1.9e-06  Score=81.72  Aligned_cols=132  Identities=20%  Similarity=0.214  Sum_probs=84.3

Q ss_pred             cccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeec
Q 036801           24 SSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISR  103 (388)
Q Consensus        24 p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  103 (388)
                      |..++   .+..|.+|+|+.+ ++..++..         +..|| |+.|-+.+ +++..++.+   ++..+.|..|+.+.
T Consensus       114 p~~i~---~L~~lt~l~ls~N-qlS~lp~~---------lC~lp-Lkvli~sN-Nkl~~lp~~---ig~~~tl~~ld~s~  175 (722)
T KOG0532|consen  114 PEAIC---NLEALTFLDLSSN-QLSHLPDG---------LCDLP-LKVLIVSN-NKLTSLPEE---IGLLPTLAHLDVSK  175 (722)
T ss_pred             chhhh---hhhHHHHhhhccc-hhhcCChh---------hhcCc-ceeEEEec-CccccCCcc---cccchhHHHhhhhh
Confidence            55566   5666666666665 45555544         32333 66666654 566666655   44667777777776


Q ss_pred             CCCceEecccccCCccccccCCccEEEEeecCccccccccchhhcc-CccEeeccccccccccccchhHhhcCCCccEEE
Q 036801          104 CPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLC-KLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQ  182 (388)
Q Consensus       104 c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  182 (388)
                      | .+..+++..      ..+.+|+.|.+..|..    ..+|...+. .|.+||+++++...   +|. .+..|..|++|.
T Consensus       176 n-ei~slpsql------~~l~slr~l~vrRn~l----~~lp~El~~LpLi~lDfScNkis~---iPv-~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  176 N-EIQSLPSQL------GYLTSLRDLNVRRNHL----EDLPEELCSLPLIRLDFSCNKISY---LPV-DFRKMRHLQVLQ  240 (722)
T ss_pred             h-hhhhchHHh------hhHHHHHHHHHhhhhh----hhCCHHHhCCceeeeecccCceee---cch-hhhhhhhheeee
Confidence            6 555555555      3667777777777766    566665433 67788888765433   565 677888888888


Q ss_pred             EEeccC
Q 036801          183 IEGYNY  188 (388)
Q Consensus       183 l~~~~l  188 (388)
                      +.||-+
T Consensus       241 LenNPL  246 (722)
T KOG0532|consen  241 LENNPL  246 (722)
T ss_pred             eccCCC
Confidence            877666

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.69  E-value=4.2e-06  Score=79.51  Aligned_cols=175  Identities=17%  Similarity=0.182  Sum_probs=117.3

Q ss_pred             cccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeec
Q 036801           24 SSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISR  103 (388)
Q Consensus        24 p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  103 (388)
                      |..+.   .|..|+.+.+..+ .+..++..         +.++..|++|+|+. +.+..++..   +..+ -|+.|.+++
T Consensus        91 p~~~~---~f~~Le~liLy~n-~~r~ip~~---------i~~L~~lt~l~ls~-NqlS~lp~~---lC~l-pLkvli~sN  152 (722)
T KOG0532|consen   91 PEEAC---AFVSLESLILYHN-CIRTIPEA---------ICNLEALTFLDLSS-NQLSHLPDG---LCDL-PLKVLIVSN  152 (722)
T ss_pred             chHHH---HHHHHHHHHHHhc-cceecchh---------hhhhhHHHHhhhcc-chhhcCChh---hhcC-cceeEEEec
Confidence            55555   5667777777655 45555555         66788888888875 457766665   2333 388888876


Q ss_pred             CCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeeccccccccccccchhHhhcCCCccEE
Q 036801          104 CPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVL  181 (388)
Q Consensus       104 c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L  181 (388)
                      + +++.+|.+.      ...+.|..|+.+.|++    ..+|.  +.+.+|+.|.+..++-..   +|. .+. .-.|.+|
T Consensus       153 N-kl~~lp~~i------g~~~tl~~ld~s~nei----~slpsql~~l~slr~l~vrRn~l~~---lp~-El~-~LpLi~l  216 (722)
T KOG0532|consen  153 N-KLTSLPEEI------GLLPTLAHLDVSKNEI----QSLPSQLGYLTSLRDLNVRRNHLED---LPE-ELC-SLPLIRL  216 (722)
T ss_pred             C-ccccCCccc------ccchhHHHhhhhhhhh----hhchHHhhhHHHHHHHHHhhhhhhh---CCH-HHh-CCceeee
Confidence            6 777777776      3778888888888887    55555  457888888888876554   555 333 4467888


Q ss_pred             EEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC---CCCCCcCEEEEec
Q 036801          182 QIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS---TSFQNLTTLEISH  258 (388)
Q Consensus       182 ~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~---~~~~~L~~L~l~~  258 (388)
                      +++||++    ..+|                      -.+..|+.|+.|.+.+++- ++-|..+   +..+=.++|.+..
T Consensus       217 DfScNki----s~iP----------------------v~fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA  269 (722)
T KOG0532|consen  217 DFSCNKI----SYLP----------------------VDFRKMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQA  269 (722)
T ss_pred             ecccCce----eecc----------------------hhhhhhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchh
Confidence            8899888    4444                      4556789999999987753 3222211   2333456666665


Q ss_pred             C
Q 036801          259 C  259 (388)
Q Consensus       259 c  259 (388)
                      |
T Consensus       270 ~  270 (722)
T KOG0532|consen  270 C  270 (722)
T ss_pred             c
Confidence            5

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.48  E-value=0.00019  Score=67.28  Aligned_cols=72  Identities=22%  Similarity=0.264  Sum_probs=48.4

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      .+.++++|++++| .++.+ |.      --.+|++|.+++|..++.++..         +  .++|++|.+.+|..+..+
T Consensus        50 ~~~~l~~L~Is~c-~L~sL-P~------LP~sLtsL~Lsnc~nLtsLP~~---------L--P~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         50 EARASGRLYIKDC-DIESL-PV------LPNELTEITIENCNNLTTLPGS---------I--PEGLEKLTVCHCPEISGL  110 (426)
T ss_pred             HhcCCCEEEeCCC-CCccc-CC------CCCCCcEEEccCCCCcccCCch---------h--hhhhhheEccCccccccc
Confidence            4678889999987 56655 41      1235889999888877766543         1  357888888887666544


Q ss_pred             cCCCcccccCCCccEEEeec
Q 036801           84 STGDVHMLEFPSLKELWISR  103 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~  103 (388)
                               .++|+.|++.+
T Consensus       111 ---------P~sLe~L~L~~  121 (426)
T PRK15386        111 ---------PESVRSLEIKG  121 (426)
T ss_pred             ---------ccccceEEeCC
Confidence                     34466666653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.39  E-value=2.5e-05  Score=78.85  Aligned_cols=156  Identities=16%  Similarity=0.123  Sum_probs=89.3

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      .+|++|+++|...+..--|..+|.  -||+|++|.+.+-.-..+   +.     .+-...||+|++|++++. +++++. 
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~--~LPsL~sL~i~~~~~~~~---dF-----~~lc~sFpNL~sLDIS~T-nI~nl~-  189 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGT--MLPSLRSLVISGRQFDND---DF-----SQLCASFPNLRSLDISGT-NISNLS-  189 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhh--hCcccceEEecCceecch---hH-----HHHhhccCccceeecCCC-CccCcH-
Confidence            578888988865554444445666  789999998877421111   00     011557899999999885 566662 


Q ss_pred             CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccc--ccc-c-ch-hhccCccEeeccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTN--KFL-F-SK-DLLCKLKCLDVEFVD  160 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~--~~~-l-p~-~~l~~L~~L~l~~~~  160 (388)
                      +   +..+++|+.|.+.+..-.........     -.+++|+.|||+.......  +.. . .. ..+|+|+.||.++..
T Consensus       190 G---IS~LknLq~L~mrnLe~e~~~~l~~L-----F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  190 G---ISRLKNLQVLSMRNLEFESYQDLIDL-----FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             H---HhccccHHHHhccCCCCCchhhHHHH-----hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            2   45788888888765422211100111     3688899999987433211  111 1 11 237888888888754


Q ss_pred             cccccccchhHhhcCCCccEEEE
Q 036801          161 ELTTILSLDDFLQRFHTLKVLQI  183 (388)
Q Consensus       161 ~~~~~~~~~~~~~~l~~L~~L~l  183 (388)
                      --. . +....+..-++|+.+..
T Consensus       262 i~~-~-~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  262 INE-E-ILEELLNSHPNLQQIAA  282 (699)
T ss_pred             hhH-H-HHHHHHHhCccHhhhhh
Confidence            322 2 22223444555655443

>PLN03150 hypothetical protein; Provisional

Probab=97.21  E-value=0.00043  Score=69.99  Aligned_cols=103  Identities=12%  Similarity=0.031  Sum_probs=59.0

Q ss_pred             cceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCce-Eecccc
Q 036801           36 LQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFM-VKFKRT  114 (388)
Q Consensus        36 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~  114 (388)
                      ++.|+|.++.-...++..         +..+++|+.|++.++ .+....+..  +..+++|+.|++++| .+. .+|...
T Consensus       420 v~~L~L~~n~L~g~ip~~---------i~~L~~L~~L~Ls~N-~l~g~iP~~--~~~l~~L~~LdLs~N-~lsg~iP~~l  486 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPND---------ISKLRHLQSINLSGN-SIRGNIPPS--LGSITSLEVLDLSYN-SFNGSIPESL  486 (623)
T ss_pred             EEEEECCCCCccccCCHH---------HhCCCCCCEEECCCC-cccCcCChH--HhCCCCCCEEECCCC-CCCCCCchHH
Confidence            667777776332233332         556777777777764 455433332  556777777777776 343 333333


Q ss_pred             cCCccccccCCccEEEEeecCccccccccchhh---ccCccEeeccccc
Q 036801          115 TNDLTKKVFPNLEELIVDAKYITTNKFLFSKDL---LCKLKCLDVEFVD  160 (388)
Q Consensus       115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~---l~~L~~L~l~~~~  160 (388)
                            ..+++|+.|++++|...   ..+|...   ..++..+++.++.
T Consensus       487 ------~~L~~L~~L~Ls~N~l~---g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        487 ------GQLTSLRILNLNGNSLS---GRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             ------hcCCCCCEEECcCCccc---ccCChHHhhccccCceEEecCCc
Confidence                  46777777777776653   3344432   2355566666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.14  E-value=0.00024  Score=62.74  Aligned_cols=108  Identities=17%  Similarity=0.164  Sum_probs=55.3

Q ss_pred             CCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCc
Q 036801          221 SSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDH  300 (388)
Q Consensus       221 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~  300 (388)
                      ..-.|.++.|+++.+. +..+ ..++.+++|..|++++. .+.....  +-..+.+.++|.+.. +.++.+.+       
T Consensus       303 vKL~Pkir~L~lS~N~-i~~v-~nLa~L~~L~~LDLS~N-~Ls~~~G--wh~KLGNIKtL~La~-N~iE~LSG-------  369 (490)
T KOG1259|consen  303 VKLAPKLRRLILSQNR-IRTV-QNLAELPQLQLLDLSGN-LLAECVG--WHLKLGNIKTLKLAQ-NKIETLSG-------  369 (490)
T ss_pred             hhhccceeEEeccccc-eeee-hhhhhcccceEeecccc-hhHhhhh--hHhhhcCEeeeehhh-hhHhhhhh-------
Confidence            3345677777777653 2222 23556667777777652 3332221  222455667776643 33443322       


Q ss_pred             cccccceecccccceeecccccccceeccCcccccCCCcceEeccCCc
Q 036801          301 DAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCT  348 (388)
Q Consensus       301 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~  348 (388)
                            ...+=+|..|++.+. +++.+....-.+++|+|+++.+.+.|
T Consensus       370 ------L~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  370 ------LRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             ------hHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence                  123456666666663 34444322112567777777776644

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.13  E-value=3.6e-05  Score=69.10  Aligned_cols=257  Identities=14%  Similarity=0.116  Sum_probs=135.3

Q ss_pred             cCCCcccEEeEecCCCCccccccccccc-ccccccceeeccccccccEeeecccccc---cccccccccccceEeccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSN-SSFVRLQYIEIEKCHVLEELIVMDNQEE---DRNNIVIFPRLQYLKMYDLE   78 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~   78 (388)
                      ..+..++.++++|+..-+ ....+++.. .+.++|+..++++.  ....+.....++   -.+.+-.+|+|++|++++. 
T Consensus        27 ~~~~s~~~l~lsgnt~G~-EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-  102 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGT-EAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-  102 (382)
T ss_pred             cccCceEEEeccCCchhH-HHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-
Confidence            456788999999975332 223333320 16778999999886  333333221000   0111446789999999984 


Q ss_pred             cccc-ccCCC-cccccCCCccEEEeecCCCceEecccccCC--------ccccccCCccEEEEeecCccccccccch---
Q 036801           79 KLTS-FSTGD-VHMLEFPSLKELWISRCPGFMVKFKRTTND--------LTKKVFPNLEELIVDAKYITTNKFLFSK---  145 (388)
Q Consensus        79 ~l~~-~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~--------~~~~~l~~L~~L~i~~~~~~~~~~~lp~---  145 (388)
                      .+.. -+++. -.+.++..|+.|.+.+|. +..........        .-...-++|+.+...+|..-........   
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~  181 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF  181 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence            3332 11110 024568999999999884 32111111000        0114567899999988876211111111   


Q ss_pred             hhccCccEeeccccccccc-cccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCC
Q 036801          146 DLLCKLKCLDVEFVDELTT-ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIM  224 (388)
Q Consensus       146 ~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l  224 (388)
                      ...+.|+.+.+..+..... .......+.+++.|++|++..|-+   +..-+..+.                  ..++.+
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf---t~egs~~La------------------kaL~s~  240 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF---TLEGSVALA------------------KALSSW  240 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh---hhHHHHHHH------------------HHhccc
Confidence            1235677776665443220 112233567788888888844444   111111000                  455567


Q ss_pred             CccceEEecCCcccc----ccCCCC-CCCCCcCEEEEecCCCceeecch---hhhhccCccCEEeecccc
Q 036801          225 DNLVILRVSSCHHLI----NLVPSS-TSFQNLTTLEISHCNGLKNVLTF---LIAKTLVRLREMKIESCA  286 (388)
Q Consensus       225 ~~L~~L~l~~c~~l~----~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~---~~~~~~~~L~~L~l~~c~  286 (388)
                      ++|++|++.+|..-.    .+...+ ...++|+.+.+.++. ++.-...   ......|.|++|++.+|.
T Consensus       241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             chheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            788888888883321    111111 356788888887653 3221111   011236777888776653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.00  E-value=7e-05  Score=67.31  Aligned_cols=259  Identities=17%  Similarity=0.104  Sum_probs=130.2

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEeccccc----------ccccccCCCcccccCCCccEEEe
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLE----------KLTSFSTGDVHMLEFPSLKELWI  101 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------~l~~~~~~~~~~~~~~~L~~L~l  101 (388)
                      .+..++.|+|+++. +..   +. ..+.-..+.+.+.|+..++++.-          .+..+...   ...+|.|+++++
T Consensus        28 ~~~s~~~l~lsgnt-~G~---EA-a~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~a---L~~~~~L~~ldL   99 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNT-FGT---EA-ARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKA---LLGCPKLQKLDL   99 (382)
T ss_pred             ccCceEEEeccCCc-hhH---HH-HHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHH---HhcCCceeEeec
Confidence            68889999999983 111   00 00111114566788888887641          11112222   334789999999


Q ss_pred             ecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhh-ccCccEeeccccccccccccchhHhhcCCCccE
Q 036801          102 SRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDL-LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKV  180 (388)
Q Consensus       102 ~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  180 (388)
                      +++.-=...+...  +.+...+..|++|.+.+|.+-    ..--+. -..|..|....            -+..-+.|++
T Consensus       100 SDNA~G~~g~~~l--~~ll~s~~~L~eL~L~N~Glg----~~ag~~l~~al~~l~~~k------------k~~~~~~Lrv  161 (382)
T KOG1909|consen  100 SDNAFGPKGIRGL--EELLSSCTDLEELYLNNCGLG----PEAGGRLGRALFELAVNK------------KAASKPKLRV  161 (382)
T ss_pred             cccccCccchHHH--HHHHHhccCHHHHhhhcCCCC----hhHHHHHHHHHHHHHHHh------------ccCCCcceEE
Confidence            9983211111110  122356899999999999872    221111 12333333111            1233556777


Q ss_pred             EEEEeccCCCCceeec-CccccccceeeeeeccceeccccCCCCCCccceEEecCCccc----cccCCCCCCCCCcCEEE
Q 036801          181 LQIEGYNYWLPKEKVE-NGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHL----INLVPSSTSFQNLTTLE  255 (388)
Q Consensus       181 L~l~~~~l~~~~~~~~-~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l----~~l~~~~~~~~~L~~L~  255 (388)
                      +..+.|.+    ...+ ....                  ..+...+.|+.+.++.+..-    +.+...+.++++|++|+
T Consensus       162 ~i~~rNrl----en~ga~~~A------------------~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLd  219 (382)
T KOG1909|consen  162 FICGRNRL----ENGGATALA------------------EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLD  219 (382)
T ss_pred             EEeecccc----ccccHHHHH------------------HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeee
Confidence            66655555    1111 0000                  23334466777776654321    22223456777777777


Q ss_pred             EecCCCceeecchh---hhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccccc----ceec
Q 036801          256 ISHCNGLKNVLTFL---IAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESL----RSFY  328 (388)
Q Consensus       256 l~~c~~l~~~~~~~---~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l----~~l~  328 (388)
                      +.+. .++.-....   ..+.+++|++|++.+|..-.+-.....    ..+.   -..|+|+.|.+.++.--    ..+.
T Consensus       220 l~DN-tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~----~al~---~~~p~L~vl~l~gNeIt~da~~~la  291 (382)
T KOG1909|consen  220 LRDN-TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV----DALK---ESAPSLEVLELAGNEITRDAALALA  291 (382)
T ss_pred             cccc-hhhhHHHHHHHHHhcccchheeecccccccccccHHHHH----HHHh---ccCCCCceeccCcchhHHHHHHHHH
Confidence            7652 222211111   234567778888877742211100000    0000   12578888888776321    1111


Q ss_pred             cCcccccCCCcceEeccCCc
Q 036801          329 SGYCALNFPSLERLLVDDCT  348 (388)
Q Consensus       329 ~~~~~~~~~~L~~L~l~~c~  348 (388)
                      ..+  ...|.|++|.+++|.
T Consensus       292 ~~~--~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  292 ACM--AEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHH--hcchhhHHhcCCccc
Confidence            112  336888888888764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.87  E-value=0.0011  Score=41.50  Aligned_cols=39  Identities=15%  Similarity=0.310  Sum_probs=27.7

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEe
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEEL   50 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~   50 (388)
                      ++|++|+++++ .++++ |..++   ++++|++|++++| .+.++
T Consensus         1 ~~L~~L~l~~N-~i~~l-~~~l~---~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDL-PPELS---NLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             TT-SEEEETSS-S-SSH-GGHGT---TCTTSSEEEETSS-CCSBE
T ss_pred             CcceEEEccCC-CCccc-CchHh---CCCCCCEEEecCC-CCCCC
Confidence            57889999885 56666 44577   7999999999988 45554

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.00022  Score=62.93  Aligned_cols=86  Identities=14%  Similarity=0.088  Sum_probs=43.0

Q ss_pred             cCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhH
Q 036801           92 EFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDF  171 (388)
Q Consensus        92 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~  171 (388)
                      .+..++.+++.++ .++.+...   +.+-+++|.|+.|+++.|.....|..+| --..+|+.|-+.+.. +. -......
T Consensus        69 ~~~~v~elDL~~N-~iSdWseI---~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~-L~-w~~~~s~  141 (418)
T KOG2982|consen   69 SVTDVKELDLTGN-LISDWSEI---GAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTG-LS-WTQSTSS  141 (418)
T ss_pred             Hhhhhhhhhcccc-hhccHHHH---HHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCC-CC-hhhhhhh
Confidence            3566777777665 44333211   1223567777777777766655555555 224466666555422 11 0011123


Q ss_pred             hhcCCCccEEEEE
Q 036801          172 LQRFHTLKVLQIE  184 (388)
Q Consensus       172 ~~~l~~L~~L~l~  184 (388)
                      +..+|.++.|.++
T Consensus       142 l~~lP~vtelHmS  154 (418)
T KOG2982|consen  142 LDDLPKVTELHMS  154 (418)
T ss_pred             hhcchhhhhhhhc
Confidence            4455556665553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.70  E-value=0.00063  Score=68.96  Aligned_cols=35  Identities=17%  Similarity=0.072  Sum_probs=19.3

Q ss_pred             ccCccEeeccccccccccccchhHhhcCCCccEEEE
Q 036801          148 LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI  183 (388)
Q Consensus       148 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  183 (388)
                      -.+|++|++++...+. ...+......+|+|++|.+
T Consensus       121 r~nL~~LdI~G~~~~s-~~W~~kig~~LPsL~sL~i  155 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFS-NGWPKKIGTMLPSLRSLVI  155 (699)
T ss_pred             HHhhhhcCccccchhh-ccHHHHHhhhCcccceEEe
Confidence            3466666666554444 4444445555666666666

>PLN03150 hypothetical protein; Provisional

Probab=96.64  E-value=0.004  Score=63.01  Aligned_cols=63  Identities=21%  Similarity=0.167  Sum_probs=29.4

Q ss_pred             CCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801          221 SSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC  285 (388)
Q Consensus       221 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  285 (388)
                      +..+++|+.|++++|.....+|..+..+++|+.|+++++.--..+|.  ....+++|+.|+++++
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~--~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE--SLGQLTSLRILNLNGN  500 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch--HHhcCCCCCEEECcCC
Confidence            33445555555555533334444455555555555554322222222  1234555555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.55  E-value=7e-05  Score=73.47  Aligned_cols=38  Identities=18%  Similarity=0.223  Sum_probs=25.0

Q ss_pred             CCcccEEeEecCCCCcccccccccccccccccceeeccccc
Q 036801            5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCH   45 (388)
Q Consensus         5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~   45 (388)
                      +++++.|.+-....-....|-.|.   .|.+||+|.+.+|+
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~if---pF~sLr~LElrg~~  120 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIF---PFRSLRVLELRGCD  120 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceec---cccceeeEEecCcc
Confidence            456666666655443322355677   68889999999985

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.34  E-value=0.0052  Score=38.36  Aligned_cols=40  Identities=28%  Similarity=0.436  Sum_probs=25.1

Q ss_pred             CccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeec
Q 036801          225 DNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVL  266 (388)
Q Consensus       225 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~  266 (388)
                      ++|++|+++++ .++++++.+..+++|+.|+++++ .+.+++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            35777777776 55666665677777777777765 455443

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.28  E-value=0.001  Score=58.83  Aligned_cols=65  Identities=14%  Similarity=0.117  Sum_probs=29.8

Q ss_pred             cccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                      .+..++.+++.+ +.+.+|.........+|.|+.|+++.++.-..+      +..|-...+|+.|.+.+...
T Consensus        69 ~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I------~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   69 SVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDI------KSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             Hhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCcc------ccCcccccceEEEEEcCCCC
Confidence            345566666655 344444322111345666666666544221111      12222344566666655443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.27  E-value=0.00091  Score=64.33  Aligned_cols=106  Identities=21%  Similarity=0.251  Sum_probs=58.5

Q ss_pred             cccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccc
Q 036801           63 IVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL  142 (388)
Q Consensus        63 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~  142 (388)
                      +..+.+|+.|++.+ ++++.+...   ...+++|++|+++++ .++.+..-       ..++.|+.|++.+|.+.    .
T Consensus        91 l~~~~~l~~l~l~~-n~i~~i~~~---l~~~~~L~~L~ls~N-~I~~i~~l-------~~l~~L~~L~l~~N~i~----~  154 (414)
T KOG0531|consen   91 LSKLKSLEALDLYD-NKIEKIENL---LSSLVNLQVLDLSFN-KITKLEGL-------STLTLLKELNLSGNLIS----D  154 (414)
T ss_pred             cccccceeeeeccc-cchhhcccc---hhhhhcchheecccc-ccccccch-------hhccchhhheeccCcch----h
Confidence            45667777777765 455555441   224777777777766 44433222       34555777777776652    2


Q ss_pred             cch-hhccCccEeeccccccccccccch-hHhhcCCCccEEEEEeccC
Q 036801          143 FSK-DLLCKLKCLDVEFVDELTTILSLD-DFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       143 lp~-~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l  188 (388)
                      +.. ..+.+|+.++++++....   +.. . ...+.+++.+.+..+.+
T Consensus       155 ~~~~~~l~~L~~l~l~~n~i~~---ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  155 ISGLESLKSLKLLDLSYNRIVD---IENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             ccCCccchhhhcccCCcchhhh---hhhhh-hhhccchHHHhccCCch
Confidence            221 226677777777665433   111 1 35566677666644444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.22  E-value=0.00028  Score=69.40  Aligned_cols=106  Identities=15%  Similarity=0.075  Sum_probs=63.8

Q ss_pred             ccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecc
Q 036801           33 FVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFK  112 (388)
Q Consensus        33 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  112 (388)
                      ++.|+.|+|++| +++...          ++..|++|+.|++.. +.+..++...  ...+. |+.|.++++ .++.+..
T Consensus       186 l~ale~LnLshN-k~~~v~----------~Lr~l~~LkhLDlsy-N~L~~vp~l~--~~gc~-L~~L~lrnN-~l~tL~g  249 (1096)
T KOG1859|consen  186 LPALESLNLSHN-KFTKVD----------NLRRLPKLKHLDLSY-NCLRHVPQLS--MVGCK-LQLLNLRNN-ALTTLRG  249 (1096)
T ss_pred             HHHhhhhccchh-hhhhhH----------HHHhccccccccccc-chhccccccc--hhhhh-heeeeeccc-HHHhhhh
Confidence            456677777776 333322          155677777777764 4566665443  33344 777777766 3332211


Q ss_pred             cccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccc
Q 036801          113 RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDE  161 (388)
Q Consensus       113 ~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~  161 (388)
                      .       +++.+|+.|+++.|-+..-..-.|.+.+..|+.|++.++..
T Consensus       250 i-------e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  250 I-------ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             H-------HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            1       57788888888776553211235667788888888887653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.88  E-value=0.0014  Score=63.15  Aligned_cols=102  Identities=19%  Similarity=0.125  Sum_probs=52.9

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+++|+.|++.++ +++.+...         +..+++|++|++++ +.+.++....    .++.|+.|++.++ .+..+.
T Consensus        93 ~~~~l~~l~l~~n-~i~~i~~~---------l~~~~~L~~L~ls~-N~I~~i~~l~----~l~~L~~L~l~~N-~i~~~~  156 (414)
T KOG0531|consen   93 KLKSLEALDLYDN-KIEKIENL---------LSSLVNLQVLDLSF-NKITKLEGLS----TLTLLKELNLSGN-LISDIS  156 (414)
T ss_pred             cccceeeeecccc-chhhcccc---------hhhhhcchheeccc-cccccccchh----hccchhhheeccC-cchhcc
Confidence            5666666666665 34443331         23466666666664 4555543322    4555666666665 333332


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccc
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVD  160 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~  160 (388)
                      ..       ..+++|+.+++..+.+    ..+..   ..+.+++.+++.++.
T Consensus       157 ~~-------~~l~~L~~l~l~~n~i----~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  157 GL-------ESLKSLKLLDLSYNRI----VDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             CC-------ccchhhhcccCCcchh----hhhhhhhhhhccchHHHhccCCc
Confidence            21       2355666666666555    22222   445566666666544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.82  E-value=0.01  Score=49.80  Aligned_cols=107  Identities=16%  Similarity=0.148  Sum_probs=67.0

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      +...++++++. +..+  ..+.   +++.|..|.+.+| .+..+...-        -..+|+|..|.+.+ +++..+...
T Consensus        43 ~~d~iDLtdNd-l~~l--~~lp---~l~rL~tLll~nN-rIt~I~p~L--------~~~~p~l~~L~Ltn-Nsi~~l~dl  106 (233)
T KOG1644|consen   43 QFDAIDLTDND-LRKL--DNLP---HLPRLHTLLLNNN-RITRIDPDL--------DTFLPNLKTLILTN-NSIQELGDL  106 (233)
T ss_pred             ccceecccccc-hhhc--ccCC---CccccceEEecCC-cceeeccch--------hhhccccceEEecC-cchhhhhhc
Confidence            34556777643 3332  3345   7888999999888 566655441        22478899999987 466665432


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEee
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDA  133 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~  133 (388)
                      . -...||.|++|.+-+++.-. ..-..  ..+...+|+|+.|+..+
T Consensus       107 ~-pLa~~p~L~~Ltll~Npv~~-k~~YR--~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  107 D-PLASCPKLEYLTLLGNPVEH-KKNYR--LYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             c-hhccCCccceeeecCCchhc-ccCce--eEEEEecCcceEeehhh
Confidence            1 14568999999998875322 11110  11125789999999876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.69  E-value=0.018  Score=48.24  Aligned_cols=37  Identities=24%  Similarity=0.377  Sum_probs=17.5

Q ss_pred             cccccceEecccccccccccCCCcccccCCCccEEEeecC
Q 036801           65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC  104 (388)
Q Consensus        65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  104 (388)
                      .++.|..|.+.. +.+..+.+..  ...+|+|+.|.+.++
T Consensus        62 ~l~rL~tLll~n-NrIt~I~p~L--~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   62 HLPRLHTLLLNN-NRITRIDPDL--DTFLPNLKTLILTNN   98 (233)
T ss_pred             CccccceEEecC-Ccceeeccch--hhhccccceEEecCc
Confidence            344455555543 3444444442  334555555555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.62  E-value=0.00096  Score=55.71  Aligned_cols=84  Identities=14%  Similarity=0.158  Sum_probs=58.3

Q ss_pred             ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801           35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT  114 (388)
Q Consensus        35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  114 (388)
                      .++.++-+++. +        ++....++..++.++.|.+.+|..+.+++... ..+-.|+|+.|++++|+.+++--...
T Consensus       102 ~IeaVDAsds~-I--------~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~-l~~~~~~L~~L~lsgC~rIT~~GL~~  171 (221)
T KOG3864|consen  102 KIEAVDASDSS-I--------MYEGLEHLRDLRSIKSLSLANCKYFDDWCLER-LGGLAPSLQDLDLSGCPRITDGGLAC  171 (221)
T ss_pred             eEEEEecCCch-H--------HHHHHHHHhccchhhhheeccccchhhHHHHH-hcccccchheeeccCCCeechhHHHH
Confidence            36667766652 1        12223347788999999999998888877654 34468999999999999988543333


Q ss_pred             cCCccccccCCccEEEEee
Q 036801          115 TNDLTKKVFPNLEELIVDA  133 (388)
Q Consensus       115 ~~~~~~~~l~~L~~L~i~~  133 (388)
                      .     ..+++|+.|.+.+
T Consensus       172 L-----~~lknLr~L~l~~  185 (221)
T KOG3864|consen  172 L-----LKLKNLRRLHLYD  185 (221)
T ss_pred             H-----HHhhhhHHHHhcC
Confidence            2     4677777777766

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.00044  Score=60.51  Aligned_cols=81  Identities=20%  Similarity=0.301  Sum_probs=46.3

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+.+.+.|+.++| .+.+|..          +.+++.|++|.|+ .++++.+-+.    ..|.+|++|.++.+ .+..+.
T Consensus        17 dl~~vkKLNcwg~-~L~DIsi----------c~kMp~lEVLsLS-vNkIssL~pl----~rCtrLkElYLRkN-~I~sld   79 (388)
T KOG2123|consen   17 DLENVKKLNCWGC-GLDDISI----------CEKMPLLEVLSLS-VNKISSLAPL----QRCTRLKELYLRKN-CIESLD   79 (388)
T ss_pred             HHHHhhhhcccCC-CccHHHH----------HHhcccceeEEee-ccccccchhH----HHHHHHHHHHHHhc-ccccHH
Confidence            4666777777777 4555444          3467777777776 4566655332    25777777777665 333322


Q ss_pred             ccccCCccccccCCccEEEEee
Q 036801          112 KRTTNDLTKKVFPNLEELIVDA  133 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~  133 (388)
                      .-.+    -.++|+|+.|.+..
T Consensus        80 EL~Y----LknlpsLr~LWL~E   97 (388)
T KOG2123|consen   80 ELEY----LKNLPSLRTLWLDE   97 (388)
T ss_pred             HHHH----HhcCchhhhHhhcc
Confidence            1111    14556666666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.32  E-value=0.0017  Score=54.20  Aligned_cols=87  Identities=15%  Similarity=0.277  Sum_probs=51.7

Q ss_pred             ccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCcccccc
Q 036801          226 NLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKD  305 (388)
Q Consensus       226 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~  305 (388)
                      .++.++-+++.-...-...+..++.++.|.+.+|..+.+.....+....++|+.|+|++|+.|++-...-          
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~----------  171 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC----------  171 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH----------
Confidence            3455555544322111123356677778888888877776655455556788888888887776553211          


Q ss_pred             ceecccccceeecccccc
Q 036801          306 EVIAFSKLNELRLLNLES  323 (388)
Q Consensus       306 ~~~~~~~L~~L~l~~c~~  323 (388)
                       ...|++|+.|.+.+++.
T Consensus       172 -L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  172 -LLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             -HHHhhhhHHHHhcCchh
Confidence             12466777777766554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.95  E-value=0.17  Score=39.62  Aligned_cols=81  Identities=12%  Similarity=0.133  Sum_probs=32.1

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      ++++|+.+.+..  .++.+....        ...+.+|+.+.+.+  .+..+....  +..+++|+.+.+.+  .+..++
T Consensus        10 ~~~~l~~i~~~~--~~~~I~~~~--------F~~~~~l~~i~~~~--~~~~i~~~~--F~~~~~l~~i~~~~--~~~~i~   73 (129)
T PF13306_consen   10 NCSNLESITFPN--TIKKIGENA--------FSNCTSLKSINFPN--NLTSIGDNA--FSNCKSLESITFPN--NLKSIG   73 (129)
T ss_dssp             T-TT--EEEETS--T--EE-TTT--------TTT-TT-SEEEESS--TTSCE-TTT--TTT-TT-EEEEETS--TT-EE-
T ss_pred             CCCCCCEEEECC--CeeEeChhh--------cccccccccccccc--cccccceee--eecccccccccccc--cccccc
Confidence            455566666553  344443331        33455566666543  244444443  44455566666643  333344


Q ss_pred             ccccCCccccccCCccEEEEee
Q 036801          112 KRTTNDLTKKVFPNLEELIVDA  133 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~  133 (388)
                      ...+     ..+++|+.+.+..
T Consensus        74 ~~~F-----~~~~~l~~i~~~~   90 (129)
T PF13306_consen   74 DNAF-----SNCTNLKNIDIPS   90 (129)
T ss_dssp             TTTT-----TT-TTECEEEETT
T ss_pred             cccc-----cccccccccccCc
Confidence            3333     3455666665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.67  E-value=0.01  Score=51.63  Aligned_cols=113  Identities=24%  Similarity=0.157  Sum_probs=60.9

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEeccccc-ccc-cccCCCcccccCCCccEEEeecCCCceE
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLE-KLT-SFSTGDVHMLEFPSLKELWISRCPGFMV  109 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~l~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~  109 (388)
                      .+..|+.|.+.++ .+..+..          +-.+|+|+.|.++... ++. .+..   .+..+|+|++|+++++ .+..
T Consensus        41 ~~~~le~ls~~n~-gltt~~~----------~P~Lp~LkkL~lsdn~~~~~~~l~v---l~e~~P~l~~l~ls~N-ki~~  105 (260)
T KOG2739|consen   41 EFVELELLSVINV-GLTTLTN----------FPKLPKLKKLELSDNYRRVSGGLEV---LAEKAPNLKVLNLSGN-KIKD  105 (260)
T ss_pred             cccchhhhhhhcc-ceeeccc----------CCCcchhhhhcccCCccccccccee---hhhhCCceeEEeecCC-cccc
Confidence            5667777777665 3333222          3457788888887531 221 1211   2445688888888877 3322


Q ss_pred             ecccccCCccccccCCccEEEEeecCccc--cccccchhhccCccEeecccccccc
Q 036801          110 KFKRTTNDLTKKVFPNLEELIVDAKYITT--NKFLFSKDLLCKLKCLDVEFVDELT  163 (388)
Q Consensus       110 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~~--~~~~lp~~~l~~L~~L~l~~~~~~~  163 (388)
                      +..-.-    ...+.+|..|++.+|....  .-..--...+++|+.|+-..+....
T Consensus       106 lstl~p----l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~E  157 (260)
T KOG2739|consen  106 LSTLRP----LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEE  157 (260)
T ss_pred             ccccch----hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcc
Confidence            110000    0456777777777766521  0011122347788888877665443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.59  E-value=0.024  Score=49.45  Aligned_cols=107  Identities=21%  Similarity=0.138  Sum_probs=65.5

Q ss_pred             cccccceEecccccccccccCCCcccccCCCccEEEeecC--CCceEecccccCCccccccCCccEEEEeecCccccccc
Q 036801           65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC--PGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL  142 (388)
Q Consensus        65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c--~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~  142 (388)
                      .+..|+.|.+.++ .+..+..    .-.+|+||+|.++.+  +....+...      ...+|+|+++++++|.+-. +..
T Consensus        41 ~~~~le~ls~~n~-gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl------~e~~P~l~~l~ls~Nki~~-lst  108 (260)
T KOG2739|consen   41 EFVELELLSVINV-GLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVL------AEKAPNLKVLNLSGNKIKD-LST  108 (260)
T ss_pred             cccchhhhhhhcc-ceeeccc----CCCcchhhhhcccCCcccccccceeh------hhhCCceeEEeecCCcccc-ccc
Confidence            4566666666554 2333221    225789999999887  222222222      2567999999999988721 122


Q ss_pred             c-chhhccCccEeeccccccccccccchhHhhcCCCccEEEE
Q 036801          143 F-SKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI  183 (388)
Q Consensus       143 l-p~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  183 (388)
                      + |...+.+|..|++..|....-.......+..+++|+.|+-
T Consensus       109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            2 3345778889988887654311233456777888887776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.49  E-value=0.24  Score=38.64  Aligned_cols=105  Identities=16%  Similarity=0.153  Sum_probs=60.0

Q ss_pred             CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801            2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT   81 (388)
Q Consensus         2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~   81 (388)
                      ..++.+|+.+.+..  .++.+....|.   .+++|+.+++.+  .+..+....        ...++.|+.+.+.+  .+.
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~---~~~~l~~i~~~~--~~~~i~~~~--------F~~~~~l~~i~~~~--~~~   70 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFS---NCTSLKSINFPN--NLTSIGDNA--------FSNCKSLESITFPN--NLK   70 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTT---T-TT-SEEEESS--TTSCE-TTT--------TTT-TT-EEEEETS--TT-
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhcc---cccccccccccc--cccccceee--------eecccccccccccc--ccc
Confidence            35677899999874  46667666666   788999999977  366665542        45677899999964  455


Q ss_pred             cccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEee
Q 036801           82 SFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDA  133 (388)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~  133 (388)
                      .+....  +..+++|+.+.+..  ++..+....+     ... +|+.+.+..
T Consensus        71 ~i~~~~--F~~~~~l~~i~~~~--~~~~i~~~~f-----~~~-~l~~i~~~~  112 (129)
T PF13306_consen   71 SIGDNA--FSNCTNLKNIDIPS--NITEIGSSSF-----SNC-NLKEINIPS  112 (129)
T ss_dssp             EE-TTT--TTT-TTECEEEETT--T-BEEHTTTT-----TT--T--EEE-TT
T ss_pred             cccccc--ccccccccccccCc--cccEEchhhh-----cCC-CceEEEECC
Confidence            555553  55689999999864  4666766665     455 777777654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.33  E-value=0.0073  Score=53.10  Aligned_cols=106  Identities=21%  Similarity=0.347  Sum_probs=60.4

Q ss_pred             CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801            5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS   84 (388)
Q Consensus         5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~   84 (388)
                      +.+.+.|.+-|| +++++  . +..  .++.|++|.|+-| ++..+..          +..|.+|+.|+|.. +.+.++.
T Consensus        18 l~~vkKLNcwg~-~L~DI--s-ic~--kMp~lEVLsLSvN-kIssL~p----------l~rCtrLkElYLRk-N~I~sld   79 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDI--S-ICE--KMPLLEVLSLSVN-KISSLAP----------LQRCTRLKELYLRK-NCIESLD   79 (388)
T ss_pred             HHHhhhhcccCC-CccHH--H-HHH--hcccceeEEeecc-ccccchh----------HHHHHHHHHHHHHh-cccccHH
Confidence            445566666665 34444  1 333  7888888888776 4544333          55788888888875 3555554


Q ss_pred             CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEE
Q 036801           85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELI  130 (388)
Q Consensus        85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~  130 (388)
                      ... ....+|+|++|.+..++....-... +.-.+...+|+|+.|+
T Consensus        80 EL~-YLknlpsLr~LWL~ENPCc~~ag~n-YR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   80 ELE-YLKNLPSLRTLWLDENPCCGEAGQN-YRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHH-HHhcCchhhhHhhccCCcccccchh-HHHHHHHHcccchhcc
Confidence            332 3456788888888777654322111 0001124567777776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=91.44  E-value=0.01  Score=46.71  Aligned_cols=12  Identities=25%  Similarity=0.537  Sum_probs=5.6

Q ss_pred             ccCccEeecccc
Q 036801          148 LCKLKCLDVEFV  159 (388)
Q Consensus       148 l~~L~~L~l~~~  159 (388)
                      ++.|+.|+++.+
T Consensus        99 m~aLr~lNl~~N  110 (177)
T KOG4579|consen   99 MPALRSLNLRFN  110 (177)
T ss_pred             hHHhhhcccccC
Confidence            444444444443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.18  E-value=0.13  Score=24.70  Aligned_cols=17  Identities=18%  Similarity=0.364  Sum_probs=8.1

Q ss_pred             CCcceEeccCCcccccCC
Q 036801          337 PSLERLLVDDCTNMEIFS  354 (388)
Q Consensus       337 ~~L~~L~l~~c~~l~~l~  354 (388)
                      ++|+.|++++|. ++.+|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            356677777664 55544

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=90.50  E-value=0.18  Score=26.04  Aligned_cols=19  Identities=21%  Similarity=0.172  Sum_probs=12.6

Q ss_pred             CcceEeccCCcccccCCCCC
Q 036801          338 SLERLLVDDCTNMEIFSRGE  357 (388)
Q Consensus       338 ~L~~L~l~~c~~l~~l~~~~  357 (388)
                      +|++|++++| +++.+|..+
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSF   19 (22)
T ss_dssp             TESEEEETSS-EESEEGTTT
T ss_pred             CccEEECCCC-cCEeCChhh
Confidence            4677777776 666776654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=87.21  E-value=0.052  Score=42.82  Aligned_cols=107  Identities=14%  Similarity=0.193  Sum_probs=62.2

Q ss_pred             ccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCC
Q 036801            8 LTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGD   87 (388)
Q Consensus         8 L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   87 (388)
                      +..++++.|... .+ +...-..+....|+.++|++| ..+.++...        ...+|..+.|++.+ +.+.++|.. 
T Consensus        29 ~h~ldLssc~lm-~i-~davy~l~~~~el~~i~ls~N-~fk~fp~kf--------t~kf~t~t~lNl~~-neisdvPeE-   95 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YI-ADAVYMLSKGYELTKISLSDN-GFKKFPKKF--------TIKFPTATTLNLAN-NEISDVPEE-   95 (177)
T ss_pred             hhhcccccchhh-HH-HHHHHHHhCCceEEEEecccc-hhhhCCHHH--------hhccchhhhhhcch-hhhhhchHH-
Confidence            345666666432 11 222111114556777888887 566655542        23567788888875 567777766 


Q ss_pred             cccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           88 VHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        88 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                        ...+|.|+.|+++.++ +...+....      .+.++-.|+.-++..
T Consensus        96 --~Aam~aLr~lNl~~N~-l~~~p~vi~------~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   96 --LAAMPALRSLNLRFNP-LNAEPRVIA------PLIKLDMLDSPENAR  135 (177)
T ss_pred             --HhhhHHhhhcccccCc-cccchHHHH------HHHhHHHhcCCCCcc
Confidence              5678888888888773 333333321      355666666655554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=86.97  E-value=0.12  Score=45.52  Aligned_cols=205  Identities=14%  Similarity=0.078  Sum_probs=102.6

Q ss_pred             CCcccEEeEecCCCCccccccccccc-ccccccceeeccccccccEeeecc-ccc--ccccccccccccceEeccccccc
Q 036801            5 IQNLTHLTFYNCMNLRCLFSSSTVSN-SSFVRLQYIEIEKCHVLEELIVMD-NQE--EDRNNIVIFPRLQYLKMYDLEKL   80 (388)
Q Consensus         5 l~~L~~L~l~~~~~~~~~~p~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~-~~~--~~~~~~~~l~~L~~L~l~~~~~l   80 (388)
                      +..++.++++|+...+ ....|++.+ .+-.+|+..++++..  +....+. +.+  --.+.+-.||+|+..++++. .+
T Consensus        29 ~d~~~evdLSGNtigt-EA~e~l~~~ia~~~~L~vvnfsd~f--tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Af  104 (388)
T COG5238          29 MDELVEVDLSGNTIGT-EAMEELCNVIANVRNLRVVNFSDAF--TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AF  104 (388)
T ss_pred             hcceeEEeccCCcccH-HHHHHHHHHHhhhcceeEeehhhhh--hcccHHHHHHHHHHHHHHHhcCCcceeeecccc-cc
Confidence            4567888888865433 222333320 156677777777642  1111111 000  01112446888888888874 33


Q ss_pred             c-cccCCCc-ccccCCCccEEEeecCCCceEecccccCC-----cc---ccccCCccEEEEeecCccccccccchhhc--
Q 036801           81 T-SFSTGDV-HMLEFPSLKELWISRCPGFMVKFKRTTND-----LT---KKVFPNLEELIVDAKYITTNKFLFSKDLL--  148 (388)
Q Consensus        81 ~-~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-----~~---~~~l~~L~~L~i~~~~~~~~~~~lp~~~l--  148 (388)
                      . .+++... .+.+-..|+.|.+++| .+-.+....+..     ..   ...-|.|+...+..|..-.+........+  
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s  183 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES  183 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence            2 2222100 1345678888888877 332111111100     00   13567888888877766222122211111  


Q ss_pred             -cCccEeecccccccccc---ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCC
Q 036801          149 -CKLKCLDVEFVDELTTI---LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIM  224 (388)
Q Consensus       149 -~~L~~L~l~~~~~~~~~---~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l  224 (388)
                       .+|+.+.+..+...+ .   ......+.++++|+.|++..|-+   +-.-+..+                 . ..+..+
T Consensus       184 h~~lk~vki~qNgIrp-egv~~L~~~gl~y~~~LevLDlqDNtf---t~~gS~~L-----------------a-~al~~W  241 (388)
T COG5238         184 HENLKEVKIQQNGIRP-EGVTMLAFLGLFYSHSLEVLDLQDNTF---TLEGSRYL-----------------A-DALCEW  241 (388)
T ss_pred             hcCceeEEeeecCcCc-chhHHHHHHHHHHhCcceeeeccccch---hhhhHHHH-----------------H-HHhccc
Confidence             267777776654322 1   11122456788899988844443   11000000                 0 344566


Q ss_pred             CccceEEecCCc
Q 036801          225 DNLVILRVSSCH  236 (388)
Q Consensus       225 ~~L~~L~l~~c~  236 (388)
                      +.|++|.+.+|-
T Consensus       242 ~~lrEL~lnDCl  253 (388)
T COG5238         242 NLLRELRLNDCL  253 (388)
T ss_pred             chhhhccccchh
Confidence            778999998883

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=83.00  E-value=0.27  Score=43.40  Aligned_cols=261  Identities=14%  Similarity=0.002  Sum_probs=124.3

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEeccccc----------ccccccCCCcccccCCCccEEEe
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLE----------KLTSFSTGDVHMLEFPSLKELWI  101 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------~l~~~~~~~~~~~~~~~L~~L~l  101 (388)
                      -+..+..++|++|.--++-     +++.-..+..-.+|+...+++.-          ++..+.+.   ...||.|++.++
T Consensus        28 ~~d~~~evdLSGNtigtEA-----~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~a---Llkcp~l~~v~L   99 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEA-----MEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKA---LLKCPRLQKVDL   99 (388)
T ss_pred             hhcceeEEeccCCcccHHH-----HHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHH---HhcCCcceeeec
Confidence            4667889999997311110     01111113345667777766421          11111112   345899999999


Q ss_pred             ecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhh-ccCccEeeccccccccccccchhHhhcCCCccE
Q 036801          102 SRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDL-LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKV  180 (388)
Q Consensus       102 ~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  180 (388)
                      +++.-=...+...  +.+...-..|.+|.+.+|..    ..+.-+. -..|++|....            -..+-|.|++
T Consensus       100 SDNAfg~~~~e~L--~d~is~~t~l~HL~l~NnGl----Gp~aG~rigkal~~la~nK------------Kaa~kp~Le~  161 (388)
T COG5238         100 SDNAFGSEFPEEL--GDLISSSTDLVHLKLNNNGL----GPIAGGRIGKALFHLAYNK------------KAADKPKLEV  161 (388)
T ss_pred             cccccCcccchHH--HHHHhcCCCceeEEeecCCC----CccchhHHHHHHHHHHHHh------------hhccCCCceE
Confidence            8874222222222  22335667889999988876    3322221 11222222111            1233466777


Q ss_pred             EEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccc----ccc-CCCCCCCCCcCEEE
Q 036801          181 LQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHL----INL-VPSSTSFQNLTTLE  255 (388)
Q Consensus       181 L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l----~~l-~~~~~~~~~L~~L~  255 (388)
                      +..+.|.+    ...+...                |- ..+..-.+|+.+.+..+..-    +.+ .-.+.++++|+.|+
T Consensus       162 vicgrNRl----engs~~~----------------~a-~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLD  220 (388)
T COG5238         162 VICGRNRL----ENGSKEL----------------SA-ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLD  220 (388)
T ss_pred             EEeccchh----ccCcHHH----------------HH-HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeee
Confidence            66655555    1111000                00 11222246677777655221    111 12346788899999


Q ss_pred             EecCCCceeecc---hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccc----cceec
Q 036801          256 ISHCNGLKNVLT---FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLES----LRSFY  328 (388)
Q Consensus       256 l~~c~~l~~~~~---~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~----l~~l~  328 (388)
                      +.+. -++....   ..+.+.++.|++|.+.+|-.-.+-.....    ..+  .-..+|.|..|...+...    +..+.
T Consensus       221 lqDN-tft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~----~~f--~e~~~p~l~~L~~~Yne~~~~~i~~~~  293 (388)
T COG5238         221 LQDN-TFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL----RRF--NEKFVPNLMPLPGDYNERRGGIILDIS  293 (388)
T ss_pred             cccc-chhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH----HHh--hhhcCCCccccccchhhhcCceeeeec
Confidence            8753 2221111   11245677899999988832221110000    000  012457777776665432    11211


Q ss_pred             -cCcccccCCCcceEeccC
Q 036801          329 -SGYCALNFPSLERLLVDD  346 (388)
Q Consensus       329 -~~~~~~~~~~L~~L~l~~  346 (388)
                       ....-..+|-|..|.+.+
T Consensus       294 l~~~e~~~~p~L~~le~ng  312 (388)
T COG5238         294 LNEFEQDAVPLLVDLERNG  312 (388)
T ss_pred             hhhhhhcccHHHHHHHHcc
Confidence             111113467777777765

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.54  E-value=0.78  Score=24.66  Aligned_cols=16  Identities=38%  Similarity=0.692  Sum_probs=12.0

Q ss_pred             CCCccEEEeecCCCce
Q 036801           93 FPSLKELWISRCPGFM  108 (388)
Q Consensus        93 ~~~L~~L~l~~c~~l~  108 (388)
                      +++|+.|++++|++++
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            4678888888887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	388
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 5e-10
 Identities = 60/369 (16%), Positives = 112/369 (30%), Gaps = 103/369 (27%)

Query: 5   IQNLTHLTFYNCMNLRC--LFSSSTVSNSSFV---RLQYIEIEKCH----------VLEE 49
           +QN       N  NL C  L ++     + F+      +I ++             +L +
Sbjct: 253 VQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 50  LIVMDNQEEDRNNIVIFP---------------RLQYLKMYDLEKLTSFSTGDVHMLEFP 94
            +    Q+  R  +   P                    K  + +KLT+     +++LE  
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 95  SLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCL 154
             +++           F      L+  VFP        A  I T        LL  +   
Sbjct: 370 EYRKM-----------FD----RLS--VFPP------SAH-IPT-------ILLSLIWFD 398

Query: 155 DVEFVDELTTILSLDDFLQRFHTLKVL--QIEGYNYWLP------KEKVENGVEV--IIR 204
            ++              + + H   ++  Q +     +P      K K+EN   +   I 
Sbjct: 399 VIKSDVM--------VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 205 EAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPS------STSFQNLTTLE--I 256
           + YN     +         +D      +   HHL N+            F +   LE  I
Sbjct: 451 DHYNIPK-TFDSDDLIPPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 257 SHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNEL 316
            H +      +  I  TL +L+  K      I      D+D  ++   + ++ F    E 
Sbjct: 508 RH-DSTAWNASGSILNTLQQLKFYK----PYIC-----DNDPKYERLVNAILDFLPKIEE 557

Query: 317 RLLNLESLR 325
            L+  +   
Sbjct: 558 NLICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 38/255 (14%), Positives = 81/255 (31%), Gaps = 45/255 (17%)

Query: 143 FSKDLLCKLKCLDVEFVDELTTILS---LDDFLQRFHTLKVLQIEGYNYWLPKEKVENGV 199
           F  +  CK    DV+  D   +ILS   +D  +     +         +W    K E  V
Sbjct: 29  FVDNFDCK----DVQ--DMPKSILSKEEIDHIIMSKDAVSGTL---RLFWTLLSKQEEMV 79

Query: 200 EVIIREAYNCYDMKYIL-KHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISH 258
           +  + E     + K+++   ++     +++          +       +  N++ L+   
Sbjct: 80  QKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ--P 136

Query: 259 CNGLKNVLTFLIAKTLVRLREM----KIESCAMITEIVLADDDDDHDAAKDEV--IAFSK 312
              L+  L  L     V +  +    K  +  +  ++ L            ++  +    
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGK--TW-VALDVCL--SYKVQCKMDFKIFWLNLKN 191

Query: 313 LN--ELRLLNLESL-RSFYSGYCAL-NFPSLERLLVDDCTNMEIFSRGELSTPMLHK--- 365
            N  E  L  L+ L       + +  +  S  +L +          + EL   +  K   
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-------IQAELRRLLKSKPYE 244

Query: 366 ----VQLNMWDEACW 376
               V LN+ +   W
Sbjct: 245 NCLLVLLNVQNAKAW 259

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 16/128 (12%)

Query: 226 NLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC 285
            L  L +        +V +     NL  L +S C+G        +  +  RL E+ +  C
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178

Query: 286 AMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYC----ALNFPSLER 341
              TE  +            +V        +  LNL   R               P+L  
Sbjct: 179 FDFTEKHV------------QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226

Query: 342 LLVDDCTN 349
           L + D   
Sbjct: 227 LDLSDSVM 234

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	388
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.87
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.83
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.83
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.83
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.79
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.78
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.77
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.76
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.74
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.73
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.68
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.68
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.65
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.65
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.65
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.63
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.63
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.62
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.6
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.59
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.59
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.58
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.57
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.57
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.57
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.56
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.56
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.55
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.55
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.54
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.54
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.53
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.53
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.49
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.48
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.47
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.42
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.39
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.38
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.38
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.37
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.3
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.26
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.25
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.25
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.21
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.2
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.1
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.1
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.1
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.02
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.02
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.01
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.01
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.01
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.96
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.91
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.9
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.87
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.83
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.82
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.8
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.78
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.73
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.62
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.52
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.38
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.29
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.87
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.76
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.37
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.92
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.56
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.33
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	88.65
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	86.52

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=1.8e-22  Score=196.21  Aligned_cols=304  Identities=20%  Similarity=0.169  Sum_probs=223.6

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      +++++|+++++ .++.+.|..|.   ++++|++|+|++| .+..+....        +..+++|++|++.++ .+..++.
T Consensus        32 ~~l~~L~L~~n-~l~~~~~~~~~---~l~~L~~L~L~~n-~i~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~   97 (477)
T 2id5_A           32 TETRLLDLGKN-RIKTLNQDEFA---SFPHLEELELNEN-IVSAVEPGA--------FNNLFNLRTLGLRSN-RLKLIPL   97 (477)
T ss_dssp             TTCSEEECCSS-CCCEECTTTTT---TCTTCCEEECTTS-CCCEECTTT--------TTTCTTCCEEECCSS-CCCSCCT
T ss_pred             CCCcEEECCCC-ccceECHhHcc---CCCCCCEEECCCC-ccCEeChhh--------hhCCccCCEEECCCC-cCCccCc
Confidence            47889999885 56777677777   7999999999988 566654321        567889999999874 6777776


Q ss_pred             CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTI  165 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~  165 (388)
                      ..  +..+++|++|++++| .+..+....+     ..+++|++|++++|.+. .+..-....+++|+.|+++++....  
T Consensus        98 ~~--~~~l~~L~~L~Ls~n-~i~~~~~~~~-----~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~--  166 (477)
T 2id5_A           98 GV--FTGLSNLTKLDISEN-KIVILLDYMF-----QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTS--  166 (477)
T ss_dssp             TS--STTCTTCCEEECTTS-CCCEECTTTT-----TTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSS--
T ss_pred             cc--ccCCCCCCEEECCCC-ccccCChhHc-----cccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcc--
Confidence            64  567899999999888 5555555444     57889999999888762 1111123457889999998875433  


Q ss_pred             ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801          166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS  245 (388)
Q Consensus       166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~  245 (388)
                       ++...+..+++|+.|++..+.+   ....                     + ..+..+++|+.|++++|..+..++...
T Consensus       167 -~~~~~l~~l~~L~~L~l~~n~i---~~~~---------------------~-~~~~~l~~L~~L~l~~~~~~~~~~~~~  220 (477)
T 2id5_A          167 -IPTEALSHLHGLIVLRLRHLNI---NAIR---------------------D-YSFKRLYRLKVLEISHWPYLDTMTPNC  220 (477)
T ss_dssp             -CCHHHHTTCTTCCEEEEESCCC---CEEC---------------------T-TCSCSCTTCCEEEEECCTTCCEECTTT
T ss_pred             -cChhHhcccCCCcEEeCCCCcC---cEeC---------------------h-hhcccCcccceeeCCCCccccccCccc
Confidence             5555788889999999966666   3321                     2 566788999999999998888888877


Q ss_pred             CCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccc
Q 036801          246 TSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLR  325 (388)
Q Consensus       246 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  325 (388)
                      ....+|+.|+++++ .+..++.. ....+++|++|+++++. ++.+....           +..+++|+.|++.++ .+.
T Consensus       221 ~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~  285 (477)
T 2id5_A          221 LYGLNLTSLSITHC-NLTAVPYL-AVRHLVYLRFLNLSYNP-ISTIEGSM-----------LHELLRLQEIQLVGG-QLA  285 (477)
T ss_dssp             TTTCCCSEEEEESS-CCCSCCHH-HHTTCTTCCEEECCSSC-CCEECTTS-----------CTTCTTCCEEECCSS-CCS
T ss_pred             ccCccccEEECcCC-cccccCHH-HhcCccccCeeECCCCc-CCccChhh-----------ccccccCCEEECCCC-ccc
Confidence            77779999999976 67767654 34678999999997764 55443211           224689999999987 566


Q ss_pred             eeccCcccccCCCcceEeccCCcccccCCCC-CcCCCCcceEEEeccCCccccccc
Q 036801          326 SFYSGYCALNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQLNMWDEACWAWKE  380 (388)
Q Consensus       326 ~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l~~~~~~~~~~~~  380 (388)
                      .+.... +..+++|+.|+++++ .++.++.. +..+++|+.+++.   ++.|.++.
T Consensus       286 ~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~---~N~l~c~c  336 (477)
T 2id5_A          286 VVEPYA-FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILD---SNPLACDC  336 (477)
T ss_dssp             EECTTT-BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECC---SSCEECSG
T ss_pred             eECHHH-hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEcc---CCCccCcc
Confidence            664433 367899999999986 77777765 3567999999998   66666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.88  E-value=4.2e-21  Score=192.02  Aligned_cols=328  Identities=16%  Similarity=0.110  Sum_probs=195.1

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      +++++|+++++ .++.+.|..|+   ++++|++|++++| .+..+....        +..+++|++|+++++ .+....+
T Consensus        33 ~~l~~L~Ls~n-~i~~~~~~~~~---~l~~L~~L~Ls~n-~i~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~   98 (606)
T 3t6q_A           33 NSTECLEFSFN-VLPTIQNTTFS---RLINLTFLDLTRC-QIYWIHEDT--------FQSQHRLDTLVLTAN-PLIFMAE   98 (606)
T ss_dssp             TTCCEEECTTC-CCSEECTTTST---TCTTCSEEECTTC-CCCEECTTT--------TTTCTTCCEEECTTC-CCSEECT
T ss_pred             CcCcEEEccCC-ccCcCChhHhc---cCccceEEECCCC-ccceeChhh--------ccCccccCeeeCCCC-cccccCh
Confidence            36888998875 56777777787   7889999999888 455543321        567888888888874 5666655


Q ss_pred             CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch-hhccCccEeeccccccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK-DLLCKLKCLDVEFVDELTT  164 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~-~~l~~L~~L~l~~~~~~~~  164 (388)
                      ..  +..+++|++|++++| .+..++...+     ..+++|++|++++|.+..  ...|. ..+++|++|+++++.... 
T Consensus        99 ~~--~~~l~~L~~L~L~~n-~i~~l~~~~~-----~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~-  167 (606)
T 3t6q_A           99 TA--LSGPKALKHLFFIQT-GISSIDFIPL-----HNQKTLESLYLGSNHISS--IKLPKGFPTEKLKVLDFQNNAIHY-  167 (606)
T ss_dssp             TT--TSSCTTCCEEECTTS-CCSCGGGSCC-----TTCTTCCEEECCSSCCCC--CCCCTTCCCTTCCEEECCSSCCCE-
T ss_pred             hh--hcccccccEeecccc-CcccCCcchh-----ccCCcccEEECCCCcccc--cCcccccCCcccCEEEcccCcccc-
Confidence            54  667888888888887 5555543333     578888888888877621  11122 227788888888765432 


Q ss_pred             cccchhHhhcCCCcc--EEEEEeccCCCCceeecCcc-------------------------------------------
Q 036801          165 ILSLDDFLQRFHTLK--VLQIEGYNYWLPKEKVENGV-------------------------------------------  199 (388)
Q Consensus       165 ~~~~~~~~~~l~~L~--~L~l~~~~l~~~~~~~~~~~-------------------------------------------  199 (388)
                        .+...+..+++|+  .|++..+.+   ....+..+                                           
T Consensus       168 --~~~~~~~~l~~L~~l~L~l~~n~l---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~  242 (606)
T 3t6q_A          168 --LSKEDMSSLQQATNLSLNLNGNDI---AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED  242 (606)
T ss_dssp             --ECHHHHHTTTTCCSEEEECTTCCC---CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred             --cChhhhhhhcccceeEEecCCCcc---CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccc
Confidence              3334677788887  566644454   23222111                                           


Q ss_pred             -----ccccc--e-eeeee---ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecch
Q 036801          200 -----EVIIR--E-AYNCY---DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTF  268 (388)
Q Consensus       200 -----~~~L~--~-~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~  268 (388)
                           +..+.  . ..+.+   .+..+++ ..+..+++|+.|++++| .++.+|..+..+++|++|+++++ .+..++..
T Consensus       243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~  319 (606)
T 3t6q_A          243 ISPAVFEGLCEMSVESINLQKHYFFNISS-NTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSAN-KFENLCQI  319 (606)
T ss_dssp             CCGGGGGGGGGSEEEEEECTTCCCSSCCT-TTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTC-CCSBGGGG
T ss_pred             cChhHhchhhcCceeEEEeecCccCccCH-HHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccC-CcCcCchh
Confidence                 11111  1 22333   4455555 56778899999999888 56678888888899999999875 45554333


Q ss_pred             hhhhccCccCEEeeccccccccccccCCCC------------Ccccc---ccceecccccceeecccccccceeccCccc
Q 036801          269 LIAKTLVRLREMKIESCAMITEIVLADDDD------------DHDAA---KDEVIAFSKLNELRLLNLESLRSFYSGYCA  333 (388)
Q Consensus       269 ~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~------------~~~~~---~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~  333 (388)
                       .+..+++|++|++.++.....+....-..            .....   ......+++|+.|++.++. +..+.... +
T Consensus       320 -~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~  396 (606)
T 3t6q_A          320 -SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEA-F  396 (606)
T ss_dssp             -CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTT-T
T ss_pred             -hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHH-h
Confidence             23567888888887664322221110000            00000   0112234556666665542 33332221 2


Q ss_pred             ccCCCcceEeccCCcccccCCCC-CcCCCCcceEEEe
Q 036801          334 LNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQLN  369 (388)
Q Consensus       334 ~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l~  369 (388)
                      ..+++|++|++++|..-...+.. +..+++|+.++++
T Consensus       397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  433 (606)
T 3t6q_A          397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS  433 (606)
T ss_dssp             TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred             cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence            45666666666665322222222 4456677777766

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=2.1e-21  Score=183.80  Aligned_cols=307  Identities=16%  Similarity=0.160  Sum_probs=220.3

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      .++++++|+++++ .++.+++..+.   .+++|++|++++| .+..++...        +..+++|++|++.++ .+..+
T Consensus        43 ~l~~l~~l~l~~~-~l~~l~~~~~~---~l~~L~~L~L~~n-~i~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~  108 (390)
T 3o6n_A           43 TLNNQKIVTFKNS-TMRKLPAALLD---SFRQVELLNLNDL-QIEEIDTYA--------FAYAHTIQKLYMGFN-AIRYL  108 (390)
T ss_dssp             GGCCCSEEEEESC-EESEECTHHHH---HCCCCSEEECTTS-CCCEECTTT--------TTTCTTCCEEECCSS-CCCCC
T ss_pred             ccCCceEEEecCC-chhhCChhHhc---ccccCcEEECCCC-cccccChhh--------ccCCCCcCEEECCCC-CCCcC
Confidence            4688999999985 46777555466   7999999999998 566665432        667899999999875 68877


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc---hhhccCccEeeccccc
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS---KDLLCKLKCLDVEFVD  160 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp---~~~l~~L~~L~l~~~~  160 (388)
                      ++..  +..+++|++|++++| .++.++...+     ..+++|++|++++|.+    ..++   ...+++|++|+++++.
T Consensus       109 ~~~~--~~~l~~L~~L~L~~n-~l~~l~~~~~-----~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          109 PPHV--FQNVPLLTVLVLERN-DLSSLPRGIF-----HNTPKLTTLSMSNNNL----ERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             CTTT--TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CBCCTTTTSSCTTCCEEECCSSC
T ss_pred             CHHH--hcCCCCCCEEECCCC-ccCcCCHHHh-----cCCCCCcEEECCCCcc----CccChhhccCCCCCCEEECCCCc
Confidence            7664  678999999999988 6777776655     5789999999999877    3333   3457899999999875


Q ss_pred             cccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCcccc
Q 036801          161 ELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLI  239 (388)
Q Consensus       161 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~  239 (388)
                      ...   .   .+..+++|+.|++..+.+   +. ++  ...+++..++.- .+..++.    ...++|+.|++.+|. ++
T Consensus       177 l~~---~---~~~~l~~L~~L~l~~n~l---~~-~~--~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~-l~  239 (390)
T 3o6n_A          177 LTH---V---DLSLIPSLFHANVSYNLL---ST-LA--IPIAVEELDASHNSINVVRG----PVNVELTILKLQHNN-LT  239 (390)
T ss_dssp             CSB---C---CGGGCTTCSEEECCSSCC---SE-EE--CCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSC-CC
T ss_pred             CCc---c---ccccccccceeecccccc---cc-cC--CCCcceEEECCCCeeeeccc----cccccccEEECCCCC-Cc
Confidence            433   2   345688999999865666   32 21  112233222222 4444432    234789999999884 44


Q ss_pred             ccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecc
Q 036801          240 NLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLL  319 (388)
Q Consensus       240 ~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~  319 (388)
                      .. +.+..+++|+.|+++++ .+...... ....+++|++|+++++ .++.+....            ..+++|+.|+++
T Consensus       240 ~~-~~l~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~------------~~l~~L~~L~L~  303 (390)
T 3o6n_A          240 DT-AWLLNYPGLVEVDLSYN-ELEKIMYH-PFVKMQRLERLYISNN-RLVALNLYG------------QPIPTLKVLDLS  303 (390)
T ss_dssp             CC-GGGGGCTTCSEEECCSS-CCCEEESG-GGTTCSSCCEEECCSS-CCCEEECSS------------SCCTTCCEEECC
T ss_pred             cc-HHHcCCCCccEEECCCC-cCCCcChh-HccccccCCEEECCCC-cCcccCccc------------CCCCCCCEEECC
Confidence            44 46778899999999976 56665443 3457899999999775 455553221            246899999999


Q ss_pred             cccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEeccCCccccc
Q 036801          320 NLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAW  378 (388)
Q Consensus       320 ~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~  378 (388)
                      ++ .+..++...  ..+++|++|++++| .++.++  ...+++|+.++++   ++.|.+
T Consensus       304 ~n-~l~~~~~~~--~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~---~N~~~~  353 (390)
T 3o6n_A          304 HN-HLLHVERNQ--PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLS---HNDWDC  353 (390)
T ss_dssp             SS-CCCCCGGGH--HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECC---SSCEEH
T ss_pred             CC-cceecCccc--cccCcCCEEECCCC-ccceeC--chhhccCCEEEcC---CCCccc
Confidence            97 577777654  67899999999986 567776  4467999999999   665554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=7.3e-22  Score=202.70  Aligned_cols=318  Identities=14%  Similarity=0.012  Sum_probs=173.2

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      ..+++|++|++++|.. +...|. ++   .+++|++|++++|.-...++..         +..+++|++|++.++ .+..
T Consensus       197 ~~l~~L~~L~Ls~n~l-~~~~~~-l~---~l~~L~~L~Ls~n~l~~~~~~~---------l~~l~~L~~L~Ls~n-~l~~  261 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNF-STGIPF-LG---DCSALQHLDISGNKLSGDFSRA---------ISTCTELKLLNISSN-QFVG  261 (768)
T ss_dssp             TTCTTCCEEECCSSCC-CSCCCB-CT---TCCSCCEEECCSSCCCSCHHHH---------TTTCSSCCEEECCSS-CCEE
T ss_pred             ccCCcCCEEECcCCcC-CCCCcc-cc---cCCCCCEEECcCCcCCCcccHH---------HhcCCCCCEEECCCC-cccC
Confidence            4678888888888654 333344 66   7888888888887422233332         455667777777654 3332


Q ss_pred             ccCCCcccccCCCccEEEeecCCCce-EecccccCCccccccCCccEEEEeecCccccccccc--hhhccCccEeecccc
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGFM-VKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS--KDLLCKLKCLDVEFV  159 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp--~~~l~~L~~L~l~~~  159 (388)
                      ..+.    ..+++|++|++++| .+. .+|....     ..+++|++|++++|.+.   ...|  .+.+++|++|+++++
T Consensus       262 ~~~~----~~l~~L~~L~L~~n-~l~~~ip~~~~-----~~~~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n  328 (768)
T 3rgz_A          262 PIPP----LPLKSLQYLSLAEN-KFTGEIPDFLS-----GACDTLTGLDLSGNHFY---GAVPPFFGSCSLLESLALSSN  328 (768)
T ss_dssp             SCCC----CCCTTCCEEECCSS-EEEESCCCCSC-----TTCTTCSEEECCSSEEE---ECCCGGGGGCTTCCEEECCSS
T ss_pred             ccCc----cccCCCCEEECcCC-ccCCccCHHHH-----hhcCcCCEEECcCCcCC---CccchHHhcCCCccEEECCCC
Confidence            2222    13566666666655 222 2222221     22355555555555432   1112  123445555555554


Q ss_pred             ccccccccchhHhhcCCCccEEEEEeccCCCCceeecCcccc---ccc-----------------------e-eeeee--
Q 036801          160 DELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEV---IIR-----------------------E-AYNCY--  210 (388)
Q Consensus       160 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~---~L~-----------------------~-~~l~l--  210 (388)
                      ....  .+|...+..+++|+.|++..+.+   .+.+|..+..   +|+                       . +.+++  
T Consensus       329 ~l~~--~ip~~~l~~l~~L~~L~Ls~n~l---~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~  403 (768)
T 3rgz_A          329 NFSG--ELPMDTLLKMRGLKVLDLSFNEF---SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN  403 (768)
T ss_dssp             EEEE--ECCHHHHTTCTTCCEEECCSSEE---EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred             cccC--cCCHHHHhcCCCCCEEeCcCCcc---CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence            3221  23333344455555555533333   2222222110   111                       1 12222  


Q ss_pred             -ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccc
Q 036801          211 -DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMIT  289 (388)
Q Consensus       211 -~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  289 (388)
                       .+.+..+ ..+..+++|+.|++++|......|..+..+++|+.|++++|.....++.  ....+++|++|+++++.-..
T Consensus       404 n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~  480 (768)
T 3rgz_A          404 NGFTGKIP-PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTG  480 (768)
T ss_dssp             SEEEEECC-GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCS
T ss_pred             CccccccC-HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccC
Confidence             3333333 4555666677777766644445555566666777777766533223333  23456677777776553221


Q ss_pred             cccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801          290 EIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN  369 (388)
Q Consensus       290 ~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~  369 (388)
                      .+..            ....+++|+.|++.++.-...++...  ..+++|++|++++|.-...+|..+..+++|+.++++
T Consensus       481 ~~p~------------~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          481 EIPS------------GLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             CCCG------------GGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred             cCCH------------HHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence            1111            12346888999998886444666644  678999999999886666788888888999999888


Q ss_pred             c
Q 036801          370 M  370 (388)
Q Consensus       370 ~  370 (388)
                      .
T Consensus       547 ~  547 (768)
T 3rgz_A          547 T  547 (768)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.88  E-value=3.4e-21  Score=192.69  Aligned_cols=139  Identities=18%  Similarity=0.160  Sum_probs=78.4

Q ss_pred             CCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCcee-ecchhhhhccCccCEEeeccccccccccccCCCCC
Q 036801          221 SSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKN-VLTFLIAKTLVRLREMKIESCAMITEIVLADDDDD  299 (388)
Q Consensus       221 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~  299 (388)
                      +..+++|+.|++++|......+..+..+++|++|+++++. +.. .... .+..+++|++|++++|. ++.+...     
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~-----  491 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSN-VFANTTNLTFLDLSKCQ-LEQISWG-----  491 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECS-CCTTCTTCCEEECTTSC-CCEECTT-----
T ss_pred             hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHH-hhccCCCCCEEECCCCc-CCccChh-----
Confidence            3344455555555443333333344455555555555432 221 1111 12345555555554442 2222111     


Q ss_pred             ccccccceecccccceeeccccccccee-ccCcccccCCCcceEeccCCcccccCCCCCcCCC-CcceEEEeccCCcccc
Q 036801          300 HDAAKDEVIAFSKLNELRLLNLESLRSF-YSGYCALNFPSLERLLVDDCTNMEIFSRGELSTP-MLHKVQLNMWDEACWA  377 (388)
Q Consensus       300 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~-~L~~l~l~~~~~~~~~  377 (388)
                            ....+++|+.|+++++. +..+ +...  ..+++|++|++++| .++.+|..+..++ +|+.+++.   ++.|.
T Consensus       492 ------~~~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~---~N~~~  558 (606)
T 3vq2_A          492 ------VFDTLHRLQLLNMSHNN-LLFLDSSHY--NQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLT---NNSVA  558 (606)
T ss_dssp             ------TTTTCTTCCEEECCSSC-CSCEEGGGT--TTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECC---SCCCC
T ss_pred             ------hhcccccCCEEECCCCc-CCCcCHHHc--cCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEcc---CCCcc
Confidence                  12346888899998874 5544 4433  67899999999986 5788888877776 59999998   55555


Q ss_pred             ccc
Q 036801          378 WKE  380 (388)
Q Consensus       378 ~~~  380 (388)
                      +..
T Consensus       559 c~c  561 (606)
T 3vq2_A          559 CIC  561 (606)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.87  E-value=3.9e-21  Score=178.86  Aligned_cols=297  Identities=16%  Similarity=0.187  Sum_probs=193.5

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      .+++|++|+++++. ++.+ + .+.   .+++|++|++++| .+..++.          +..+++|++|++.++ .+..+
T Consensus        42 ~l~~L~~L~l~~~~-i~~~-~-~~~---~~~~L~~L~l~~n-~i~~~~~----------~~~l~~L~~L~L~~n-~i~~~  103 (347)
T 4fmz_A           42 ELESITKLVVAGEK-VASI-Q-GIE---YLTNLEYLNLNGN-QITDISP----------LSNLVKLTNLYIGTN-KITDI  103 (347)
T ss_dssp             HHTTCSEEECCSSC-CCCC-T-TGG---GCTTCCEEECCSS-CCCCCGG----------GTTCTTCCEEECCSS-CCCCC
T ss_pred             hcccccEEEEeCCc-cccc-h-hhh---hcCCccEEEccCC-ccccchh----------hhcCCcCCEEEccCC-cccCc
Confidence            56788888888854 4444 3 366   7888888888887 4555433          456788888888875 56655


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccc
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELT  163 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~  163 (388)
                      + .   +..+++|++|++++| .+..++.  +     ..+++|++|++++|.....+  -+...+++|++|+++++....
T Consensus       104 ~-~---~~~l~~L~~L~l~~n-~i~~~~~--~-----~~l~~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~  169 (347)
T 4fmz_A          104 S-A---LQNLTNLRELYLNED-NISDISP--L-----ANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKD  169 (347)
T ss_dssp             G-G---GTTCTTCSEEECTTS-CCCCCGG--G-----TTCTTCCEEECTTCTTCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             h-H---HcCCCcCCEEECcCC-cccCchh--h-----ccCCceeEEECCCCCCcccc--cchhhCCCCcEEEecCCCcCC
Confidence            3 1   456888888888877 4554544  2     47788888888877543211  123457788888888765433


Q ss_pred             ccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee---ccceeccccCCCCCCccceEEecCCccccc
Q 036801          164 TILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY---DMKYILKHESSSIMDNLVILRVSSCHHLIN  240 (388)
Q Consensus       164 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~  240 (388)
                         .+  .+..+++|+.|++..+.+   ....+.....+|+  .+.+   .+..+   ..+..+++|+.|++++| .++.
T Consensus       170 ---~~--~~~~l~~L~~L~l~~n~l---~~~~~~~~l~~L~--~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n-~l~~  235 (347)
T 4fmz_A          170 ---VT--PIANLTDLYSLSLNYNQI---EDISPLASLTSLH--YFTAYVNQITDI---TPVANMTRLNSLKIGNN-KITD  235 (347)
T ss_dssp             ---CG--GGGGCTTCSEEECTTSCC---CCCGGGGGCTTCC--EEECCSSCCCCC---GGGGGCTTCCEEECCSS-CCCC
T ss_pred             ---ch--hhccCCCCCEEEccCCcc---cccccccCCCccc--eeecccCCCCCC---chhhcCCcCCEEEccCC-ccCC
Confidence               22  266778888888854555   2222211112222  2333   33333   23567789999999888 4555


Q ss_pred             cCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccc
Q 036801          241 LVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLN  320 (388)
Q Consensus       241 l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  320 (388)
                      +++ +..+++|+.|+++++ .+.+++.   ...+++|++|++++| .++++..             ...+++|+.|++++
T Consensus       236 ~~~-~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-------------~~~l~~L~~L~L~~  296 (347)
T 4fmz_A          236 LSP-LANLSQLTWLEIGTN-QISDINA---VKDLTKLKMLNVGSN-QISDISV-------------LNNLSQLNSLFLNN  296 (347)
T ss_dssp             CGG-GTTCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGG-------------GGGCTTCSEEECCS
T ss_pred             Ccc-hhcCCCCCEEECCCC-ccCCChh---HhcCCCcCEEEccCC-ccCCChh-------------hcCCCCCCEEECcC
Confidence            544 778889999999876 5655532   457889999999776 3444421             23468999999999


Q ss_pred             ccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801          321 LESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN  369 (388)
Q Consensus       321 c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~  369 (388)
                      |. +....... +..+++|++|++++|+ ++.++. ...+++|+.++++
T Consensus       297 n~-l~~~~~~~-l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~  341 (347)
T 4fmz_A          297 NQ-LGNEDMEV-IGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFA  341 (347)
T ss_dssp             SC-CCGGGHHH-HHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSS
T ss_pred             Cc-CCCcChhH-hhccccCCEEEccCCc-cccccC-hhhhhccceeehh
Confidence            84 44443221 3578999999999875 555544 5578899999887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=1e-20  Score=187.59  Aligned_cols=149  Identities=15%  Similarity=0.180  Sum_probs=96.8

Q ss_pred             CCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecch-hhhhccCccCEEeecccccccc-ccccCCCC-
Q 036801          222 SIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTF-LIAKTLVRLREMKIESCAMITE-IVLADDDD-  298 (388)
Q Consensus       222 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~~~L~~L~l~~c~~l~~-i~~~~~~~-  298 (388)
                      ..+++|+.|++++|......+..+..+++|+.|+++++ .+..++.. .....+++|++|+++++. ++. +....... 
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l  427 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWA  427 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCc
Confidence            46678888888887554445666778888888888864 55554321 123467788888886653 332 22110000 


Q ss_pred             -Cccc-------c-ccceecc-cccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCC-CcCCCCcceEE
Q 036801          299 -DHDA-------A-KDEVIAF-SKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQ  367 (388)
Q Consensus       299 -~~~~-------~-~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~  367 (388)
                       ....       . ......+ ++|+.|+++++ .+..++...  ..+++|++|+++++ .++.+|.. +..+++|+.++
T Consensus       428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDV--THLQALQELNVASN-QLKSVPDGVFDRLTSLQYIW  503 (562)
T ss_dssp             TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEE
T ss_pred             ccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhh--cCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEE
Confidence             0000       0 0001112 68899999887 678888776  48899999999985 78889887 67789999999


Q ss_pred             EeccCCcccccc
Q 036801          368 LNMWDEACWAWK  379 (388)
Q Consensus       368 l~~~~~~~~~~~  379 (388)
                      ++   ++.|.+.
T Consensus       504 l~---~N~~~c~  512 (562)
T 3a79_B          504 LH---DNPWDCT  512 (562)
T ss_dssp             CC---SCCBCCC
T ss_pred             ec---CCCcCCC
Confidence            99   6666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.87  E-value=2.8e-21  Score=193.31  Aligned_cols=305  Identities=17%  Similarity=0.128  Sum_probs=210.4

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      +|++|+++++ .++.+++..++   .+++|++|++++| .+..++..         +..+++|++|++.++ .+...++.
T Consensus       255 ~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~n-~l~~lp~~---------l~~l~~L~~L~l~~n-~l~~~~~~  319 (606)
T 3t6q_A          255 SVESINLQKH-YFFNISSNTFH---CFSGLQELDLTAT-HLSELPSG---------LVGLSTLKKLVLSAN-KFENLCQI  319 (606)
T ss_dssp             EEEEEECTTC-CCSSCCTTTTT---TCTTCSEEECTTS-CCSCCCSS---------CCSCTTCCEEECTTC-CCSBGGGG
T ss_pred             ceeEEEeecC-ccCccCHHHhc---cccCCCEEeccCC-ccCCCChh---------hcccccCCEEECccC-CcCcCchh
Confidence            6888888885 56666666677   7899999999988 56666655         667889999999875 57766555


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccc--ccchhhccCccEeeccccccccc
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKF--LFSKDLLCKLKCLDVEFVDELTT  164 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~--~lp~~~l~~L~~L~l~~~~~~~~  164 (388)
                      .  +..+++|++|++++|.....++...+     ..+++|++|++++|.+.. ..  ......+++|++|+++++.... 
T Consensus       320 ~--~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~-  390 (606)
T 3t6q_A          320 S--ASNFPSLTHLSIKGNTKRLELGTGCL-----ENLENLRELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLS-  390 (606)
T ss_dssp             C--GGGCTTCSEEECCSCSSCCBCCSSTT-----TTCTTCCEEECCSSCCCE-EEESTTTTTTCTTCCEEECCSCSCEE-
T ss_pred             h--hhccCcCCEEECCCCCcccccchhhh-----hccCcCCEEECCCCcccc-ccCcchhcccCCCCCEEECCCCcCCc-
Confidence            4  66789999999988854445555444     578899999998887631 11  1223557899999998875433 


Q ss_pred             cccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCC
Q 036801          165 ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPS  244 (388)
Q Consensus       165 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~  244 (388)
                        .+...+..+++|+.|++..+.+   ....+                    + ..+..+++|+.|++++|......+..
T Consensus       391 --~~~~~~~~l~~L~~L~l~~n~l---~~~~~--------------------~-~~~~~l~~L~~L~l~~n~l~~~~~~~  444 (606)
T 3t6q_A          391 --LKTEAFKECPQLELLDLAFTRL---KVKDA--------------------Q-SPFQNLHLLKVLNLSHSLLDISSEQL  444 (606)
T ss_dssp             --ECTTTTTTCTTCSEEECTTCCE---ECCTT--------------------C-CTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred             --CCHHHhcCCccCCeEECCCCcC---CCccc--------------------c-hhhhCcccCCEEECCCCccCCcCHHH
Confidence              3334677888999999855555   22211                    1 34667899999999998654545566


Q ss_pred             CCCCCCcCEEEEecCCCce-eecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccc
Q 036801          245 STSFQNLTTLEISHCNGLK-NVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLES  323 (388)
Q Consensus       245 ~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  323 (388)
                      +..+++|++|+++++.--. .++.......+++|++|++++|. ++.+....           +..+++|+.|+++++. 
T Consensus       445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~Ls~N~-  511 (606)
T 3t6q_A          445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHA-----------FTSLKMMNHVDLSHNR-  511 (606)
T ss_dssp             TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTT-----------TTTCTTCCEEECCSSC-
T ss_pred             HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhh-----------hccccCCCEEECCCCc-
Confidence            7889999999999764322 12222235678999999998774 44442211           2246899999999874 


Q ss_pred             cceeccCcccccCCCcceEeccCCcccccCCC-CCcCCCCcceEEEeccCCccccccc
Q 036801          324 LRSFYSGYCALNFPSLERLLVDDCTNMEIFSR-GELSTPMLHKVQLNMWDEACWAWKE  380 (388)
Q Consensus       324 l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~l~l~~~~~~~~~~~~  380 (388)
                      +..+.... +..++.| .|++++| .+..++. .+..+++|+.++++   ++.|.+..
T Consensus       512 l~~~~~~~-l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~---~N~~~c~c  563 (606)
T 3t6q_A          512 LTSSSIEA-LSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLR---QNPLDCTC  563 (606)
T ss_dssp             CCGGGGGG-GTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECT---TCCEECSG
T ss_pred             cCcCChhH-hCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCC---CCCccccC
Confidence            54443322 3678888 9999986 4555543 34567899999998   66666544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.87  E-value=1e-20  Score=185.71  Aligned_cols=150  Identities=15%  Similarity=0.142  Sum_probs=99.7

Q ss_pred             CCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecc-hhhhhccCccCEEeecccccccc-ccccCCCC-
Q 036801          222 SIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLT-FLIAKTLVRLREMKIESCAMITE-IVLADDDD-  298 (388)
Q Consensus       222 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~L~~L~l~~c~~l~~-i~~~~~~~-  298 (388)
                      ..+++|+.|++++|......+..+..+++|++|+++++ .+..++. ......+++|++|+++++. ++. +....... 
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l  398 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWT  398 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCC
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccC
Confidence            56788999999888655556677788899999999875 4554332 1134578889999987654 333 32210000 


Q ss_pred             -Cccc-------c-ccceecc-cccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCC-CcCCCCcceEE
Q 036801          299 -DHDA-------A-KDEVIAF-SKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQ  367 (388)
Q Consensus       299 -~~~~-------~-~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~  367 (388)
                       ....       . ......+ ++|+.|+++++ .+..++...  ..+++|++|++++| .++.+|.. +..+++|+.++
T Consensus       399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQV--VKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIW  474 (520)
T ss_dssp             TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGG--GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             ccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhh--hcCCCCCEEECCCC-cCCccCHHHhccCCcccEEE
Confidence             0000       0 0000112 68888888887 577777765  58999999999986 78889887 66789999999


Q ss_pred             EeccCCccccccc
Q 036801          368 LNMWDEACWAWKE  380 (388)
Q Consensus       368 l~~~~~~~~~~~~  380 (388)
                      +.   ++.|.+..
T Consensus       475 l~---~N~~~c~c  484 (520)
T 2z7x_B          475 LH---TNPWDCSC  484 (520)
T ss_dssp             CC---SSCBCCCH
T ss_pred             Cc---CCCCcccC
Confidence            99   66655543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=6.6e-21  Score=190.21  Aligned_cols=307  Identities=16%  Similarity=0.159  Sum_probs=215.5

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      .+.+++.++++++ .++.+++..++   .+++|++|++++| .+..++...        +..+++|++|++.++ .+..+
T Consensus        49 ~l~~l~~l~l~~~-~l~~lp~~~~~---~l~~L~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~  114 (597)
T 3oja_B           49 TLNNQKIVTFKNS-TMRKLPAALLD---SFRQVELLNLNDL-QIEEIDTYA--------FAYAHTIQKLYMGFN-AIRYL  114 (597)
T ss_dssp             GGCCCSEEEESSC-EESEECTHHHH---HCCCCSEEECTTS-CCCEECTTT--------TTTCTTCCEEECCSS-CCCCC
T ss_pred             cCCCceEEEeeCC-CCCCcCHHHHc---cCCCCcEEECCCC-CCCCCChHH--------hcCCCCCCEEECCCC-cCCCC
Confidence            4578899999875 46666555566   7899999999988 466665432        567889999999875 58777


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc---hhhccCccEeeccccc
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS---KDLLCKLKCLDVEFVD  160 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp---~~~l~~L~~L~l~~~~  160 (388)
                      ++..  ++.+++|++|++++| .+..++...+     ..+++|++|++++|.+    ..++   .+.+++|++|+++++.
T Consensus       115 ~~~~--~~~l~~L~~L~L~~n-~l~~l~~~~~-----~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          115 PPHV--FQNVPLLTVLVLERN-DLSSLPRGIF-----HNTPKLTTLSMSNNNL----ERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             CTTT--TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CBCCTTTTTTCTTCCEEECTTSC
T ss_pred             CHHH--HcCCCCCCEEEeeCC-CCCCCCHHHh-----ccCCCCCEEEeeCCcC----CCCChhhhhcCCcCcEEECcCCC
Confidence            7764  677899999999988 6777776655     5788999999998876    3333   3457899999998875


Q ss_pred             cccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCcccc
Q 036801          161 ELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLI  239 (388)
Q Consensus       161 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~  239 (388)
                      ...   .   .+..+++|+.|++..+.+   .. ++  ...+|....+.- .+..++. .   ..++|+.|++++|. ++
T Consensus       183 l~~---~---~~~~l~~L~~L~l~~n~l---~~-l~--~~~~L~~L~ls~n~l~~~~~-~---~~~~L~~L~L~~n~-l~  245 (597)
T 3oja_B          183 LTH---V---DLSLIPSLFHANVSYNLL---ST-LA--IPIAVEELDASHNSINVVRG-P---VNVELTILKLQHNN-LT  245 (597)
T ss_dssp             CSB---C---CGGGCTTCSEEECCSSCC---SE-EE--CCTTCSEEECCSSCCCEEEC-S---CCSCCCEEECCSSC-CC
T ss_pred             CCC---c---ChhhhhhhhhhhcccCcc---cc-cc--CCchhheeeccCCccccccc-c---cCCCCCEEECCCCC-CC
Confidence            332   2   245678888888865665   22 11  112233222222 4444432 1   23689999999884 44


Q ss_pred             ccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecc
Q 036801          240 NLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLL  319 (388)
Q Consensus       240 ~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~  319 (388)
                      .. +.+..+++|+.|+++++ .+...+.. .+..+++|+.|+++++ .++.+....            ..+++|+.|+++
T Consensus       246 ~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~~------------~~l~~L~~L~Ls  309 (597)
T 3oja_B          246 DT-AWLLNYPGLVEVDLSYN-ELEKIMYH-PFVKMQRLERLYISNN-RLVALNLYG------------QPIPTLKVLDLS  309 (597)
T ss_dssp             CC-GGGGGCTTCSEEECCSS-CCCEEESG-GGTTCSSCCEEECTTS-CCCEEECSS------------SCCTTCCEEECC
T ss_pred             CC-hhhccCCCCCEEECCCC-ccCCCCHH-HhcCccCCCEEECCCC-CCCCCCccc------------ccCCCCcEEECC
Confidence            33 56778899999999975 56665443 3457899999999775 455553221            247899999999


Q ss_pred             cccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEeccCCccccc
Q 036801          320 NLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAW  378 (388)
Q Consensus       320 ~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~  378 (388)
                      ++ .+..++...  ..+++|+.|++++| .+..++  ...+++|+.|+++   ++.|.+
T Consensus       310 ~N-~l~~i~~~~--~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~---~N~~~~  359 (597)
T 3oja_B          310 HN-HLLHVERNQ--PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLS---HNDWDC  359 (597)
T ss_dssp             SS-CCCCCGGGH--HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECC---SSCEEH
T ss_pred             CC-CCCccCccc--ccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEee---CCCCCC
Confidence            97 566777655  67899999999986 566665  3457899999998   655553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=5.6e-21  Score=184.41  Aligned_cols=321  Identities=16%  Similarity=0.164  Sum_probs=204.3

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      ++|++|+++++ .++.+.|..++   ++++|++|++++|.....++...        +..+++|++|++.++ .+....+
T Consensus        30 ~~l~~L~Ls~n-~i~~~~~~~~~---~l~~L~~L~L~~n~~~~~i~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~   96 (455)
T 3v47_A           30 AHVNYVDLSLN-SIAELNETSFS---RLQDLQFLKVEQQTPGLVIRNNT--------FRGLSSLIILKLDYN-QFLQLET   96 (455)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTS---SCTTCCEEECCCCSTTCEECTTT--------TTTCTTCCEEECTTC-TTCEECT
T ss_pred             CccCEEEecCC-ccCcCChhHhc---cCccccEEECcCCcccceECccc--------ccccccCCEEeCCCC-ccCccCh
Confidence            57899999985 56777677788   79999999999984333443321        567889999999875 5776655


Q ss_pred             CCcccccCCCccEEEeecCCCceE-eccc-ccCCccccccCCccEEEEeecCcccccccc-c---hhhccCccEeecccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMV-KFKR-TTNDLTKKVFPNLEELIVDAKYITTNKFLF-S---KDLLCKLKCLDVEFV  159 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~-~~~~-~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l-p---~~~l~~L~~L~l~~~  159 (388)
                      ..  +..+++|++|++++| .++. .+.. .+     ..+++|++|++++|.+.    .+ |   ...+++|++|+++++
T Consensus        97 ~~--~~~l~~L~~L~L~~n-~l~~~~~~~~~~-----~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A           97 GA--FNGLANLEVLTLTQC-NLDGAVLSGNFF-----KPLTSLEMLVLRDNNIK----KIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             TT--TTTCTTCCEEECTTS-CCBTHHHHSSTT-----TTCTTCCEEECCSSBCC----SCCCCGGGGGCTTCCEEECTTC
T ss_pred             hh--ccCcccCCEEeCCCC-CCCccccCcccc-----cCcccCCEEECCCCccC----ccCcccccCCCCcccEEeCCCC
Confidence            54  677899999999888 4443 2222 12     57888999999888763    22 3   345788888888887


Q ss_pred             ccccccccchhHhhc----------------------------------CCCccEEEEEeccCCCCceeecCcccccc--
Q 036801          160 DELTTILSLDDFLQR----------------------------------FHTLKVLQIEGYNYWLPKEKVENGVEVII--  203 (388)
Q Consensus       160 ~~~~~~~~~~~~~~~----------------------------------l~~L~~L~l~~~~l~~~~~~~~~~~~~~L--  203 (388)
                      ....  ..+ ..+..                                  +++|+.|++..+.+   ....+..+...+  
T Consensus       165 ~l~~--~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l---~~~~~~~~~~~~~~  238 (455)
T 3v47_A          165 KVKS--ICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF---KESMAKRFFDAIAG  238 (455)
T ss_dssp             CBSC--CCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC---CHHHHHHHHHHTTT
T ss_pred             cccc--cCh-hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc---cccchhhhhccccc
Confidence            5432  112 12222                                  24455555533333   222221111100  


Q ss_pred             ce-eeeee-------------ccceeccccCCC--CCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecc
Q 036801          204 RE-AYNCY-------------DMKYILKHESSS--IMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLT  267 (388)
Q Consensus       204 ~~-~~l~l-------------~l~~i~~~~~l~--~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~  267 (388)
                      .. ..+.+             .+..... ..+.  ..++|+.|++++|......+..+..+++|+.|+++++ .+...+.
T Consensus       239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~  316 (455)
T 3v47_A          239 TKIQSLILSNSYNMGSSFGHTNFKDPDN-FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDD  316 (455)
T ss_dssp             CCEEEEECTTCTTTSCCTTCCSSCCCCT-TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECT
T ss_pred             cceeeEeeccccccccccchhhhccCcc-cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccCh
Confidence            00 11111             0000000 0111  2368999999988655555667788999999999875 5666654


Q ss_pred             hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCC
Q 036801          268 FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDC  347 (388)
Q Consensus       268 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c  347 (388)
                      . .+..+++|++|+++++ .++.+....           ...+++|+.|+++++ .+..+.... +..+++|++|+++++
T Consensus       317 ~-~~~~l~~L~~L~Ls~N-~l~~~~~~~-----------~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N  381 (455)
T 3v47_A          317 N-AFWGLTHLLKLNLSQN-FLGSIDSRM-----------FENLDKLEVLDLSYN-HIRALGDQS-FLGLPNLKELALDTN  381 (455)
T ss_dssp             T-TTTTCTTCCEEECCSS-CCCEECGGG-----------GTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS
T ss_pred             h-HhcCcccCCEEECCCC-ccCCcChhH-----------hcCcccCCEEECCCC-cccccChhh-ccccccccEEECCCC
Confidence            3 2457899999999776 344442211           224789999999997 466664332 367899999999985


Q ss_pred             cccccCCCCC-cCCCCcceEEEeccCCccccc
Q 036801          348 TNMEIFSRGE-LSTPMLHKVQLNMWDEACWAW  378 (388)
Q Consensus       348 ~~l~~l~~~~-~~~~~L~~l~l~~~~~~~~~~  378 (388)
                       .++.+|... ..+++|+.++++   ++.|.+
T Consensus       382 -~l~~~~~~~~~~l~~L~~L~l~---~N~l~~  409 (455)
T 3v47_A          382 -QLKSVPDGIFDRLTSLQKIWLH---TNPWDC  409 (455)
T ss_dssp             -CCSCCCTTTTTTCTTCCEEECC---SSCBCC
T ss_pred             -ccccCCHhHhccCCcccEEEcc---CCCccc
Confidence             677877654 578999999999   444443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=4.2e-21  Score=197.02  Aligned_cols=328  Identities=16%  Similarity=0.083  Sum_probs=199.3

Q ss_pred             CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801            2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT   81 (388)
Q Consensus         2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~   81 (388)
                      +.++++|++|++++|. +....|  ++   .+++|++|++++|. +...+..         +..+++|++|++.++ .+.
T Consensus       174 ~~~l~~L~~L~Ls~n~-l~~~~~--~~---~l~~L~~L~Ls~n~-l~~~~~~---------l~~l~~L~~L~Ls~n-~l~  236 (768)
T 3rgz_A          174 SDGCGELKHLAISGNK-ISGDVD--VS---RCVNLEFLDVSSNN-FSTGIPF---------LGDCSALQHLDISGN-KLS  236 (768)
T ss_dssp             TTCCTTCCEEECCSSE-EESCCB--CT---TCTTCCEEECCSSC-CCSCCCB---------CTTCCSCCEEECCSS-CCC
T ss_pred             hccCCCCCEEECCCCc-ccccCC--cc---cCCcCCEEECcCCc-CCCCCcc---------cccCCCCCEEECcCC-cCC
Confidence            4688999999999975 443333  35   89999999999984 4332222         668999999999985 566


Q ss_pred             cccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchh---hccCccEeeccc
Q 036801           82 SFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD---LLCKLKCLDVEF  158 (388)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~---~l~~L~~L~l~~  158 (388)
                      ...+..  +..+++|++|++++|. +....+.       ..+++|++|++++|.+.   ..+|..   .+++|++|++++
T Consensus       237 ~~~~~~--l~~l~~L~~L~Ls~n~-l~~~~~~-------~~l~~L~~L~L~~n~l~---~~ip~~~~~~~~~L~~L~Ls~  303 (768)
T 3rgz_A          237 GDFSRA--ISTCTELKLLNISSNQ-FVGPIPP-------LPLKSLQYLSLAENKFT---GEIPDFLSGACDTLTGLDLSG  303 (768)
T ss_dssp             SCHHHH--TTTCSSCCEEECCSSC-CEESCCC-------CCCTTCCEEECCSSEEE---ESCCCCSCTTCTTCSEEECCS
T ss_pred             CcccHH--HhcCCCCCEEECCCCc-ccCccCc-------cccCCCCEEECcCCccC---CccCHHHHhhcCcCCEEECcC
Confidence            544433  6679999999999994 4432222       26899999999998873   244443   258999999999


Q ss_pred             cccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee---ccceeccccCCCCCC-ccceEEec
Q 036801          159 VDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMD-NLVILRVS  233 (388)
Q Consensus       159 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~-~L~~L~l~  233 (388)
                      +....  ..|. .+..+++|++|++..+.+   .+.+|...+.++.+ +.+++   .+.+..+ ..+..++ +|+.|+++
T Consensus       304 n~l~~--~~p~-~~~~l~~L~~L~L~~n~l---~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~~L~~L~Ls  376 (768)
T 3rgz_A          304 NHFYG--AVPP-FFGSCSLLESLALSSNNF---SGELPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLS  376 (768)
T ss_dssp             SEEEE--CCCG-GGGGCTTCCEEECCSSEE---EEECCHHHHTTCTTCCEEECCSSEEEECCC-TTHHHHTTTCSEEECC
T ss_pred             CcCCC--ccch-HHhcCCCccEEECCCCcc---cCcCCHHHHhcCCCCCEEeCcCCccCcccc-HHHHhhhcCCcEEEcc
Confidence            86543  3443 688999999999966666   45666544444444 34444   3332222 3333343 56666666


Q ss_pred             CCccccccCCCCCC--CCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCC------------CC
Q 036801          234 SCHHLINLVPSSTS--FQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDD------------DD  299 (388)
Q Consensus       234 ~c~~l~~l~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~------------~~  299 (388)
                      +|.....++..+..  +++|+.|++++|.....++.  .+..+++|++|+++++.-...+......            .-
T Consensus       377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l  454 (768)
T 3rgz_A          377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP--TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML  454 (768)
T ss_dssp             SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG--GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCCCcChhhhhcccCCccEEECCCCccccccCH--HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence            55443333333332  44555555554421112222  1234455555555443211010000000            00


Q ss_pred             ccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEec
Q 036801          300 HDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNM  370 (388)
Q Consensus       300 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~  370 (388)
                      ..........+++|+.|++.++.-...++...  ..+++|++|++++|.-...+|..+..+++|+.++++.
T Consensus       455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  523 (768)
T 3rgz_A          455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN  523 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             cCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence            00001112346778888888875444555543  6788888888888765557787777788888888874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=2.6e-21  Score=194.38  Aligned_cols=310  Identities=14%  Similarity=0.102  Sum_probs=217.4

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeecccccccc--Eeeeccccccccccccc------ccccceEecc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLE--ELIVMDNQEEDRNNIVI------FPRLQYLKMY   75 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~--~~~~~~~~~~~~~~~~~------l~~L~~L~l~   75 (388)
                      ++++|++|++++|..... .|..++   ++++|++|++++|..+.  .+|..         +..      +++|++|++.
T Consensus       247 ~l~~L~~L~L~~n~l~~~-~p~~l~---~l~~L~~L~Ls~n~~l~~~~lp~~---------~~~L~~~~~l~~L~~L~L~  313 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTK-LPTFLK---ALPEMQLINVACNRGISGEQLKDD---------WQALADAPVGEKIQIIYIG  313 (636)
T ss_dssp             GCTTCCEEEEECCTTCSS-CCTTTT---TCSSCCEEECTTCTTSCHHHHHHH---------HHHHHHSGGGGTCCEEECC
T ss_pred             ccCCCCEEEecCCcCCcc-ChHHHh---cCCCCCEEECcCCCCCccccchHH---------HHhhhccccCCCCCEEECC
Confidence            799999999999865544 478888   89999999999995354  35544         334      4999999999


Q ss_pred             cccccccccC-CCcccccCCCccEEEeecCCCce-EecccccCCccccccCCccEEEEeecCccccccccchh--hccC-
Q 036801           76 DLEKLTSFST-GDVHMLEFPSLKELWISRCPGFM-VKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD--LLCK-  150 (388)
Q Consensus        76 ~~~~l~~~~~-~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~--~l~~-  150 (388)
                      ++ .+..++. ..  +..+++|++|++++| .+. .+| ..      ..+++|++|++++|.+    ..+|..  .+++ 
T Consensus       314 ~n-~l~~ip~~~~--l~~l~~L~~L~L~~N-~l~g~ip-~~------~~l~~L~~L~L~~N~l----~~lp~~l~~l~~~  378 (636)
T 4eco_A          314 YN-NLKTFPVETS--LQKMKKLGMLECLYN-QLEGKLP-AF------GSEIKLASLNLAYNQI----TEIPANFCGFTEQ  378 (636)
T ss_dssp             SS-CCSSCCCHHH--HTTCTTCCEEECCSC-CCEEECC-CC------EEEEEESEEECCSSEE----EECCTTSEEECTT
T ss_pred             CC-cCCccCchhh--hccCCCCCEEeCcCC-cCccchh-hh------CCCCCCCEEECCCCcc----ccccHhhhhhccc
Confidence            75 6777665 12  667999999999998 555 666 33      5889999999999877    455553  4677 


Q ss_pred             ccEeeccccccccccccchhHhhc--CCCccEEEEEeccCCCCceeecCcccc------ccce-eeeee---ccceeccc
Q 036801          151 LKCLDVEFVDELTTILSLDDFLQR--FHTLKVLQIEGYNYWLPKEKVENGVEV------IIRE-AYNCY---DMKYILKH  218 (388)
Q Consensus       151 L~~L~l~~~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~l~~~~~~~~~~~~~------~L~~-~~l~l---~l~~i~~~  218 (388)
                      |++|+++++....   +|. .+..  +++|+.|++..+.+   ....|..+.+      .+.+ +.+++   .+..++. 
T Consensus       379 L~~L~Ls~N~l~~---lp~-~~~~~~l~~L~~L~Ls~N~l---~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~-  450 (636)
T 4eco_A          379 VENLSFAHNKLKY---IPN-IFDAKSVSVMSAIDFSYNEI---GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-  450 (636)
T ss_dssp             CCEEECCSSCCSS---CCS-CCCTTCSSCEEEEECCSSCT---TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT-
T ss_pred             CcEEEccCCcCcc---cch-hhhhcccCccCEEECcCCcC---CCcchhhhcccccccccCCCCCEEECcCCccCcCCH-
Confidence            9999999876332   443 3333  34899999966676   4444433320      1222 23444   5556654 


Q ss_pred             cCCCCCCccceEEecCCccccccCCCCCC--------CCCcCEEEEecCCCceeecchhhhhccCccCEEeecccccccc
Q 036801          219 ESSSIMDNLVILRVSSCHHLINLVPSSTS--------FQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITE  290 (388)
Q Consensus       219 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--------~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~  290 (388)
                      ..+..+++|+.|++++|. ++.+|.....        +++|+.|+++++ .+..++.......+++|++|+++++ .++.
T Consensus       451 ~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~  527 (636)
T 4eco_A          451 ELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSK  527 (636)
T ss_dssp             HHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSS
T ss_pred             HHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCC
Confidence            445567899999999884 4567664432        238999999975 5667765422137899999999775 3444


Q ss_pred             ccccCCCCCccccccceecccccceeecccc------cccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcc
Q 036801          291 IVLADDDDDHDAAKDEVIAFSKLNELRLLNL------ESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLH  364 (388)
Q Consensus       291 i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c------~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~  364 (388)
                      +...            ...+++|+.|+++++      .-...++...  ..+++|++|++++| .++.+|..+.  ++|+
T Consensus       528 ip~~------------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~  590 (636)
T 4eco_A          528 FPTQ------------PLNSSTLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQLQIGSN-DIRKVNEKIT--PNIS  590 (636)
T ss_dssp             CCCG------------GGGCSSCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSS-CCCBCCSCCC--TTCC
T ss_pred             cChh------------hhcCCCCCEEECCCCcccccCcccccChHHH--hcCCCCCEEECCCC-cCCccCHhHh--CcCC
Confidence            3221            224789999999653      2345566654  67999999999986 4588988764  8999


Q ss_pred             eEEEe
Q 036801          365 KVQLN  369 (388)
Q Consensus       365 ~l~l~  369 (388)
                      .++++
T Consensus       591 ~L~Ls  595 (636)
T 4eco_A          591 VLDIK  595 (636)
T ss_dssp             EEECC
T ss_pred             EEECc
Confidence            99998

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.86  E-value=1.4e-20  Score=186.00  Aligned_cols=145  Identities=18%  Similarity=0.207  Sum_probs=80.3

Q ss_pred             CCCCCccceEEecCCccccccC---CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCC
Q 036801          221 SSIMDNLVILRVSSCHHLINLV---PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDD  297 (388)
Q Consensus       221 l~~l~~L~~L~l~~c~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~  297 (388)
                      ++.+++|+.|++++| .++.++   ..+..+++|++|++++| .+..++..  ...+++|++|+++++. ++.+......
T Consensus       357 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~~~~~~L~~L~Ls~N~-l~~l~~~~~~  431 (549)
T 2z81_A          357 KGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDS--CQWPEKMRFLNLSSTG-IRVVKTCIPQ  431 (549)
T ss_dssp             TTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSC--CCCCTTCCEEECTTSC-CSCCCTTSCT
T ss_pred             hhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChh--hcccccccEEECCCCC-cccccchhcC
Confidence            445566666666665 233332   12345556666666654 44444431  2344555555554442 2222110000


Q ss_pred             CCc----c--ccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCC-CcCCCCcceEEEec
Q 036801          298 DDH----D--AAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQLNM  370 (388)
Q Consensus       298 ~~~----~--~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l~~  370 (388)
                      .-.    .  ........+++|++|+++++ .+..++..   ..+++|+.|+++++ .++.++.. +..+++|+.+++. 
T Consensus       432 ~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~-  505 (549)
T 2z81_A          432 TLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA---SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLH-  505 (549)
T ss_dssp             TCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECC-
T ss_pred             CceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCc---ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEec-
Confidence            000    0  00000114688999999987 57777763   46899999999986 66666554 5678999999998 


Q ss_pred             cCCccccc
Q 036801          371 WDEACWAW  378 (388)
Q Consensus       371 ~~~~~~~~  378 (388)
                        ++.|.+
T Consensus       506 --~N~~~~  511 (549)
T 2z81_A          506 --TNPWDC  511 (549)
T ss_dssp             --SSCBCC
T ss_pred             --CCCccC
Confidence              555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=2.9e-21  Score=194.08  Aligned_cols=319  Identities=12%  Similarity=0.105  Sum_probs=221.2

Q ss_pred             CcCCCcccEEeEecCCCCccc-----------------cccccc-ccccccccceeeccccccccEeeeccccccccccc
Q 036801            2 TCGIQNLTHLTFYNCMNLRCL-----------------FSSSTV-SNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNI   63 (388)
Q Consensus         2 ~~~l~~L~~L~l~~~~~~~~~-----------------~p~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~   63 (388)
                      ++++++|++|++++|. ++..                 .|..++ .  ++++|++|++++|.....+|..         +
T Consensus       202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~--~l~~L~~L~L~~n~l~~~~p~~---------l  269 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWD--NLKDLTDVEVYNCPNLTKLPTF---------L  269 (636)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGG--GCTTCCEEEEECCTTCSSCCTT---------T
T ss_pred             HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhc--ccCCCCEEEecCCcCCccChHH---------H
Confidence            4678999999999976 6652                 366555 2  4999999999999656666654         7


Q ss_pred             ccccccceEeccccccccc--ccCCCccccc------CCCccEEEeecCCCceEecc--cccCCccccccCCccEEEEee
Q 036801           64 VIFPRLQYLKMYDLEKLTS--FSTGDVHMLE------FPSLKELWISRCPGFMVKFK--RTTNDLTKKVFPNLEELIVDA  133 (388)
Q Consensus        64 ~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~------~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~~l~~L~~L~i~~  133 (388)
                      ..+++|++|++.++..+..  +|..   ++.      +++|++|++++| .++.+|.  ..      ..+++|++|++++
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~---~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l------~~l~~L~~L~L~~  339 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDD---WQALADAPVGEKIQIIYIGYN-NLKTFPVETSL------QKMKKLGMLECLY  339 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHH---HHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHH------TTCTTCCEEECCS
T ss_pred             hcCCCCCEEECcCCCCCccccchHH---HHhhhccccCCCCCEEECCCC-cCCccCchhhh------ccCCCCCEEeCcC
Confidence            7899999999998643664  4433   333      499999999998 5666766  34      5899999999999


Q ss_pred             cCccccccccc-hhhccCccEeeccccccccccccchhHhhcCCC-ccEEEEEeccCCCCceeecCcccc----ccceee
Q 036801          134 KYITTNKFLFS-KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHT-LKVLQIEGYNYWLPKEKVENGVEV----IIREAY  207 (388)
Q Consensus       134 ~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~~~~~----~L~~~~  207 (388)
                      |.+.   ..+| .+.+++|+.|+++++....   +|. .+..+++ |+.|++..+.+   + .+|..+..    +|+..+
T Consensus       340 N~l~---g~ip~~~~l~~L~~L~L~~N~l~~---lp~-~l~~l~~~L~~L~Ls~N~l---~-~lp~~~~~~~l~~L~~L~  408 (636)
T 4eco_A          340 NQLE---GKLPAFGSEIKLASLNLAYNQITE---IPA-NFCGFTEQVENLSFAHNKL---K-YIPNIFDAKSVSVMSAID  408 (636)
T ss_dssp             CCCE---EECCCCEEEEEESEEECCSSEEEE---CCT-TSEEECTTCCEEECCSSCC---S-SCCSCCCTTCSSCEEEEE
T ss_pred             CcCc---cchhhhCCCCCCCEEECCCCcccc---ccH-hhhhhcccCcEEEccCCcC---c-ccchhhhhcccCccCEEE
Confidence            8873   1444 3457899999999986433   554 4778898 99999977777   4 45643321    233222


Q ss_pred             eee-ccceeccccCCC-------CCCccceEEecCCccccccCCCC-CCCCCcCEEEEecCCCceeecchhhhh------
Q 036801          208 NCY-DMKYILKHESSS-------IMDNLVILRVSSCHHLINLVPSS-TSFQNLTTLEISHCNGLKNVLTFLIAK------  272 (388)
Q Consensus       208 l~l-~l~~i~~~~~l~-------~l~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~------  272 (388)
                      +.. .+.+..+ ..+.       .+++|+.|++++| .++.+|... ..+++|+.|+++++ .+..++...+..      
T Consensus       409 Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~  485 (636)
T 4eco_A          409 FSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFK  485 (636)
T ss_dssp             CCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECT
T ss_pred             CcCCcCCCcch-hhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhcccccccc
Confidence            222 4444333 4444       5678999999887 455666544 45788999999865 555665532211      


Q ss_pred             ccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccC------
Q 036801          273 TLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDD------  346 (388)
Q Consensus       273 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~------  346 (388)
                      .+++|++|+++++ .++.+.....          ...+++|+.|+++++ .+..++...  ..+++|+.|++++      
T Consensus       486 ~l~~L~~L~Ls~N-~l~~lp~~~~----------~~~l~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~Ls~N~~ls~  551 (636)
T 4eco_A          486 NTYLLTSIDLRFN-KLTKLSDDFR----------ATTLPYLVGIDLSYN-SFSKFPTQP--LNSSTLKGFGIRNQRDAQG  551 (636)
T ss_dssp             TGGGCCEEECCSS-CCCBCCGGGS----------TTTCTTCCEEECCSS-CCSSCCCGG--GGCSSCCEEECCSCBCTTC
T ss_pred             ccCCccEEECcCC-cCCccChhhh----------hccCCCcCEEECCCC-CCCCcChhh--hcCCCCCEEECCCCccccc
Confidence            1228999999765 3544432211          014689999999986 466677765  6789999999954      


Q ss_pred             CcccccCCCCCcCCCCcceEEEec
Q 036801          347 CTNMEIFSRGELSTPMLHKVQLNM  370 (388)
Q Consensus       347 c~~l~~l~~~~~~~~~L~~l~l~~  370 (388)
                      +...+.+|..+..+++|+.++++.
T Consensus       552 N~l~~~~p~~l~~l~~L~~L~Ls~  575 (636)
T 4eco_A          552 NRTLREWPEGITLCPSLTQLQIGS  575 (636)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCS
T ss_pred             CcccccChHHHhcCCCCCEEECCC
Confidence            334567888888899999999983

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=1.1e-20  Score=178.69  Aligned_cols=281  Identities=15%  Similarity=0.152  Sum_probs=207.7

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+++++.|++.++ .++.++...        +..+++|++|++.++ .+..++...  +..+++|++|++++| .+..++
T Consensus        43 ~l~~l~~l~l~~~-~l~~l~~~~--------~~~l~~L~~L~L~~n-~i~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~  109 (390)
T 3o6n_A           43 TLNNQKIVTFKNS-TMRKLPAAL--------LDSFRQVELLNLNDL-QIEEIDTYA--FAYAHTIQKLYMGFN-AIRYLP  109 (390)
T ss_dssp             GGCCCSEEEEESC-EESEECTHH--------HHHCCCCSEEECTTS-CCCEECTTT--TTTCTTCCEEECCSS-CCCCCC
T ss_pred             ccCCceEEEecCC-chhhCChhH--------hcccccCcEEECCCC-cccccChhh--ccCCCCcCEEECCCC-CCCcCC
Confidence            5789999999998 577777652        457899999999985 688887764  678999999999998 576676


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                      +..+     ..+++|++|++++|.+    ..+|.   ..+++|++|+++++....   .+...+..+++|+.|++..+.+
T Consensus       110 ~~~~-----~~l~~L~~L~L~~n~l----~~l~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          110 PHVF-----QNVPLLTVLVLERNDL----SSLPRGIFHNTPKLTTLSMSNNNLER---IEDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             TTTT-----TTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCB---CCTTTTSSCTTCCEEECCSSCC
T ss_pred             HHHh-----cCCCCCCEEECCCCcc----CcCCHHHhcCCCCCcEEECCCCccCc---cChhhccCCCCCCEEECCCCcC
Confidence            6655     6899999999999987    56665   347899999999976433   4444678899999999966777


Q ss_pred             CCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecc
Q 036801          189 WLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLT  267 (388)
Q Consensus       189 ~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~  267 (388)
                         +. ++.+..++|+...+.. .+..+      ...++|++|+++++ .+..++.  ..+++|+.|+++++ .+.+.+ 
T Consensus       178 ---~~-~~~~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~n-~l~~~~-  242 (390)
T 3o6n_A          178 ---TH-VDLSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHN-SINVVRG--PVNVELTILKLQHN-NLTDTA-  242 (390)
T ss_dssp             ---SB-CCGGGCTTCSEEECCSSCCSEE------ECCSSCSEEECCSS-CCCEEEC--CCCSSCCEEECCSS-CCCCCG-
T ss_pred             ---Cc-cccccccccceeeccccccccc------CCCCcceEEECCCC-eeeeccc--cccccccEEECCCC-CCcccH-
Confidence               32 3434444444333222 33333      23468999999887 4444443  34578999999976 555553 


Q ss_pred             hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCC
Q 036801          268 FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDC  347 (388)
Q Consensus       268 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c  347 (388)
                        ....+++|++|+++++. ++.+....           ...+++|+.|++.++ .+..++...  ..+++|++|++++|
T Consensus       243 --~l~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          243 --WLLNYPGLVEVDLSYNE-LEKIMYHP-----------FVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHN  305 (390)
T ss_dssp             --GGGGCTTCSEEECCSSC-CCEEESGG-----------GTTCSSCCEEECCSS-CCCEEECSS--SCCTTCCEEECCSS
T ss_pred             --HHcCCCCccEEECCCCc-CCCcChhH-----------ccccccCCEEECCCC-cCcccCccc--CCCCCCCEEECCCC
Confidence              34588999999997763 44442211           224689999999996 678887654  67899999999997


Q ss_pred             cccccCCCCCcCCCCcceEEEec
Q 036801          348 TNMEIFSRGELSTPMLHKVQLNM  370 (388)
Q Consensus       348 ~~l~~l~~~~~~~~~L~~l~l~~  370 (388)
                       .++.+|..+..+++|+.+++++
T Consensus       306 -~l~~~~~~~~~l~~L~~L~L~~  327 (390)
T 3o6n_A          306 -HLLHVERNQPQFDRLENLYLDH  327 (390)
T ss_dssp             -CCCCCGGGHHHHTTCSEEECCS
T ss_pred             -cceecCccccccCcCCEEECCC
Confidence             6778887777789999999984

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=4.5e-20  Score=187.04  Aligned_cols=216  Identities=12%  Similarity=0.069  Sum_probs=99.4

Q ss_pred             CccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee---ccceeccccCCCCCC
Q 036801          150 KLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMD  225 (388)
Q Consensus       150 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~  225 (388)
                      +|+.|+++++....   .+...+..+++|+.|++..+.+   ...++...+.++.+ ..+++   .+..+.+ ..+..++
T Consensus       382 ~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~  454 (680)
T 1ziw_A          382 PLHILNLTKNKISK---IESDAFSWLGHLEVLDLGLNEI---GQELTGQEWRGLENIFEIYLSYNKYLQLTR-NSFALVP  454 (680)
T ss_dssp             CCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCC---EEECCSGGGTTCTTCCEEECCSCSEEECCT-TTTTTCT
T ss_pred             cCceEECCCCCCCe---EChhhhhCCCCCCEEeCCCCcC---ccccCcccccCcccccEEecCCCCcceeCh-hhhhcCc
Confidence            45555555543222   2223455666666666644454   33344333333333 23333   3334433 4445555


Q ss_pred             ccceEEecCCcc--ccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCc---
Q 036801          226 NLVILRVSSCHH--LINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDH---  300 (388)
Q Consensus       226 ~L~~L~l~~c~~--l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~---  300 (388)
                      +|+.|++.+|..  +...|..+..+++|+.|+++++ .+..++.. ....+++|++|+++++ .++.+.........   
T Consensus       455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~  531 (680)
T 1ziw_A          455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDD-MLEGLEKLEILDLQHN-NLARLWKHANPGGPIYF  531 (680)
T ss_dssp             TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCT
T ss_pred             ccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChh-hhccccccCEEeCCCC-CccccchhhccCCcchh
Confidence            566666555432  1333444555555666666543 34444332 1234555555555443 23222110000000   


Q ss_pred             -----------------ccc-ccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCc--CC
Q 036801          301 -----------------DAA-KDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGEL--ST  360 (388)
Q Consensus       301 -----------------~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~  360 (388)
                                       ... ...+..+++|+.|+++++ .+..++... +..+++|+.|+++++ .++.++....  .+
T Consensus       532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~  608 (680)
T 1ziw_A          532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASV-FNNQVSLKSLNLQKN-LITSVEKKVFGPAF  608 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECTTS-CCCBCCHHHHHHHH
T ss_pred             hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhH-hCCCCCCCEEECCCC-cCCccChhHhcccc
Confidence                             000 000123456666666553 455555442 245566667766664 5555544322  35


Q ss_pred             CCcceEEEeccCCcccccccC
Q 036801          361 PMLHKVQLNMWDEACWAWKEG  381 (388)
Q Consensus       361 ~~L~~l~l~~~~~~~~~~~~~  381 (388)
                      ++|+.+++.   ++.|.+..+
T Consensus       609 ~~L~~l~l~---~N~~~c~c~  626 (680)
T 1ziw_A          609 RNLTELDMR---FNPFDCTCE  626 (680)
T ss_dssp             TTCSEEECT---TCCCCBCCC
T ss_pred             cccCEEEcc---CCCcccCCc
Confidence            677777777   666665443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=1.3e-20  Score=193.62  Aligned_cols=317  Identities=15%  Similarity=0.124  Sum_probs=216.1

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccE--eeecccccccccccccccccceEecccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEE--LIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT   81 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~   81 (388)
                      ++++|++|++++|.....+ |.+++   ++++|++|++++|..+..  +|.... ... .....+++|+.|++.++ .+.
T Consensus       489 ~L~~L~~L~Ls~N~l~~~i-P~~l~---~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~-~~~~~l~~L~~L~Ls~N-~L~  561 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQL-PDFLY---DLPELQSLNIACNRGISAAQLKADWT-RLA-DDEDTGPKIQIFYMGYN-NLE  561 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSC-CGGGG---GCSSCCEEECTTCTTSCHHHHHHHHH-HHH-HCTTTTTTCCEEECCSS-CCC
T ss_pred             cCCCCCEEECcCCCCCccC-hHHHh---CCCCCCEEECcCCCCcccccchHHHH-hhh-hcccccCCccEEEeeCC-cCC
Confidence            7999999999998655544 77788   899999999999853443  444310 000 01335669999999975 677


Q ss_pred             cccC-CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccC-ccEeecc
Q 036801           82 SFST-GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCK-LKCLDVE  157 (388)
Q Consensus        82 ~~~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~-L~~L~l~  157 (388)
                      .++. ..  +..+++|+.|++++| .+..+| ..      ..+++|+.|++++|.+    ..+|.  ..+++ |+.|+++
T Consensus       562 ~ip~~~~--l~~L~~L~~L~Ls~N-~l~~lp-~~------~~L~~L~~L~Ls~N~l----~~lp~~l~~l~~~L~~L~Ls  627 (876)
T 4ecn_A          562 EFPASAS--LQKMVKLGLLDCVHN-KVRHLE-AF------GTNVKLTDLKLDYNQI----EEIPEDFCAFTDQVEGLGFS  627 (876)
T ss_dssp             BCCCHHH--HTTCTTCCEEECTTS-CCCBCC-CC------CTTSEESEEECCSSCC----SCCCTTSCEECTTCCEEECC
T ss_pred             ccCChhh--hhcCCCCCEEECCCC-Ccccch-hh------cCCCcceEEECcCCcc----ccchHHHhhccccCCEEECc
Confidence            7766 12  667999999999988 455666 33      5889999999999887    45564  34677 9999999


Q ss_pred             ccccccccccchhHhhcCC--CccEEEEEeccCCCCceeecCc---c--c--cccceeeeee-ccceeccccCCCCCCcc
Q 036801          158 FVDELTTILSLDDFLQRFH--TLKVLQIEGYNYWLPKEKVENG---V--E--VIIREAYNCY-DMKYILKHESSSIMDNL  227 (388)
Q Consensus       158 ~~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~l~~~~~~~~~~---~--~--~~L~~~~l~l-~l~~i~~~~~l~~l~~L  227 (388)
                      ++....   +|. .+..++  +|+.|++..|.+   ...+|.-   .  +  .+|+...+.- .+..++. ..+..+++|
T Consensus       628 ~N~L~~---lp~-~~~~~~~~~L~~L~Ls~N~l---~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L  699 (876)
T 4ecn_A          628 HNKLKY---IPN-IFNAKSVYVMGSVDFSYNKI---GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPI  699 (876)
T ss_dssp             SSCCCS---CCS-CCCTTCSSCEEEEECCSSCT---TTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCC
T ss_pred             CCCCCc---Cch-hhhccccCCCCEEECcCCcC---CCccccchhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCC
Confidence            876332   443 344443  499999966666   3333211   0  0  1233222222 5555554 344467899


Q ss_pred             ceEEecCCccccccCCCCCC--------CCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCC
Q 036801          228 VILRVSSCHHLINLVPSSTS--------FQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDD  299 (388)
Q Consensus       228 ~~L~l~~c~~l~~l~~~~~~--------~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~  299 (388)
                      +.|++++| .++.+|.....        +++|+.|++++| .+..++.......+++|+.|+++++ .++.+...     
T Consensus       700 ~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~-----  771 (876)
T 4ecn_A          700 STIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQ-----  771 (876)
T ss_dssp             SEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCG-----
T ss_pred             CEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchh-----
Confidence            99999988 55577665433        338999999976 6667765421137899999999765 35443221     


Q ss_pred             ccccccceecccccceeeccccc------ccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801          300 HDAAKDEVIAFSKLNELRLLNLE------SLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN  369 (388)
Q Consensus       300 ~~~~~~~~~~~~~L~~L~l~~c~------~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~  369 (388)
                             ...+++|+.|++++++      -...++...  ..+++|+.|++++| .++.+|..+.  ++|+.|+++
T Consensus       772 -------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs  835 (876)
T 4ecn_A          772 -------PLNSSQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIA  835 (876)
T ss_dssp             -------GGGCTTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECC
T ss_pred             -------hhcCCCCCEEECCCCCCcccccccccChHHH--hcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECC
Confidence                   2357899999997733      344566554  67999999999987 4588998864  799999998

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=8.9e-20  Score=182.40  Aligned_cols=111  Identities=14%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      .++++|++|++++| .++.+.|.+|+   ++++|++|++++| .+..++..        .+..+++|++|++.++ .+..
T Consensus        53 ~~l~~L~~L~Ls~n-~l~~i~~~~~~---~l~~L~~L~Ls~n-~l~~~~p~--------~~~~l~~L~~L~L~~n-~l~~  118 (606)
T 3vq2_A           53 SNFSELQWLDLSRC-EIETIEDKAWH---GLHHLSNLILTGN-PIQSFSPG--------SFSGLTSLENLVAVET-KLAS  118 (606)
T ss_dssp             TTCTTCCEEECTTC-CCCEECTTTTT---TCTTCCEEECTTC-CCCCCCTT--------SSTTCTTCCEEECTTS-CCCC
T ss_pred             cCCccCcEEeCCCC-cccccCHHHhh---chhhcCEeECCCC-cccccChh--------hcCCcccCCEEEccCC-cccc
Confidence            34556666666654 34444454555   5666666666655 23333221        1456677777777654 4555


Q ss_pred             ccCCCcccccCCCccEEEeecCCCceE--ecccccCCccccccCCccEEEEeecCc
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGFMV--KFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                      .++..  ++.+++|++|++++| .+..  +|...      ..+++|++|++++|.+
T Consensus       119 ~~~~~--~~~l~~L~~L~L~~n-~l~~~~lp~~~------~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A          119 LESFP--IGQLITLKKLNVAHN-FIHSCKLPAYF------SNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             SSSSC--CTTCTTCCEEECCSS-CCCCCCCCGGG------GTCTTCCEEECCSSCC
T ss_pred             ccccc--cCCCCCCCEEeCCCC-cccceechHhH------hhcCCCCEEEccCCcc
Confidence            55443  556777777777766 3332  33333      4678888888887765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=7.3e-20  Score=177.77  Aligned_cols=271  Identities=14%  Similarity=0.101  Sum_probs=179.8

Q ss_pred             CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801            2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT   81 (388)
Q Consensus         2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~   81 (388)
                      +.++++|++|++++| .++.+.|..|+   ++++|++|++++| .+..++...        +..+++|++|++.++ .+.
T Consensus        52 ~~~l~~L~~L~L~~n-~i~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~Ls~n-~i~  117 (477)
T 2id5_A           52 FASFPHLEELELNEN-IVSAVEPGAFN---NLFNLRTLGLRSN-RLKLIPLGV--------FTGLSNLTKLDISEN-KIV  117 (477)
T ss_dssp             TTTCTTCCEEECTTS-CCCEECTTTTT---TCTTCCEEECCSS-CCCSCCTTS--------STTCTTCCEEECTTS-CCC
T ss_pred             ccCCCCCCEEECCCC-ccCEeChhhhh---CCccCCEEECCCC-cCCccCccc--------ccCCCCCCEEECCCC-ccc
Confidence            467899999999986 57777788888   8999999999998 566665432        467899999999975 677


Q ss_pred             cccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccc
Q 036801           82 SFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEF  158 (388)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~  158 (388)
                      ...+..  +..+++|++|+++++ .+..+....+     ..+++|++|++++|.+    ..++.   ..+++|+.|++++
T Consensus       118 ~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~l----~~~~~~~l~~l~~L~~L~l~~  185 (477)
T 2id5_A          118 ILLDYM--FQDLYNLKSLEVGDN-DLVYISHRAF-----SGLNSLEQLTLEKCNL----TSIPTEALSHLHGLIVLRLRH  185 (477)
T ss_dssp             EECTTT--TTTCTTCCEEEECCT-TCCEECTTSS-----TTCTTCCEEEEESCCC----SSCCHHHHTTCTTCCEEEEES
T ss_pred             cCChhH--ccccccCCEEECCCC-ccceeChhhc-----cCCCCCCEEECCCCcC----cccChhHhcccCCCcEEeCCC
Confidence            776664  678999999999988 5666665555     6899999999999887    44554   4578999999998


Q ss_pred             cccccccccchhHhhcCCCccEEEE-EeccCCCCceeecCcccc--ccceeeeee-ccceeccccCCCCCCccceEEecC
Q 036801          159 VDELTTILSLDDFLQRFHTLKVLQI-EGYNYWLPKEKVENGVEV--IIREAYNCY-DMKYILKHESSSIMDNLVILRVSS  234 (388)
Q Consensus       159 ~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~~~--~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~  234 (388)
                      +....   .+...+..+++|+.|++ +++.+    ..++...+.  +|+..++.- .+..++. ..+..+++|+.|++++
T Consensus       186 n~i~~---~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~  257 (477)
T 2id5_A          186 LNINA---IRDYSFKRLYRLKVLEISHWPYL----DTMTPNCLYGLNLTSLSITHCNLTAVPY-LAVRHLVYLRFLNLSY  257 (477)
T ss_dssp             CCCCE---ECTTCSCSCTTCCEEEEECCTTC----CEECTTTTTTCCCSEEEEESSCCCSCCH-HHHTTCTTCCEEECCS
T ss_pred             CcCcE---eChhhcccCcccceeeCCCCccc----cccCcccccCccccEEECcCCcccccCH-HHhcCccccCeeECCC
Confidence            76443   34446788999999999 55444    444433332  233222222 4444443 4455666677777766


Q ss_pred             CccccccC-CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceeccccc
Q 036801          235 CHHLINLV-PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKL  313 (388)
Q Consensus       235 c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L  313 (388)
                      |. ++.++ ..+..+++|+.|+++++ .+..+... .+..+++|+.|+++++ .++.+....           +..+++|
T Consensus       258 n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~-----------~~~l~~L  322 (477)
T 2id5_A          258 NP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEESV-----------FHSVGNL  322 (477)
T ss_dssp             SC-CCEECTTSCTTCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEEECCSS-CCSCCCGGG-----------BSCGGGC
T ss_pred             Cc-CCccChhhccccccCCEEECCCC-ccceECHH-HhcCcccCCEEECCCC-cCceeCHhH-----------cCCCccc
Confidence            63 33333 23456666777777654 44444333 2345666777777554 333332111           1234666


Q ss_pred             ceeecccc
Q 036801          314 NELRLLNL  321 (388)
Q Consensus       314 ~~L~l~~c  321 (388)
                      +.|++.++
T Consensus       323 ~~L~l~~N  330 (477)
T 2id5_A          323 ETLILDSN  330 (477)
T ss_dssp             CEEECCSS
T ss_pred             CEEEccCC
Confidence            66666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=8.4e-20  Score=181.13  Aligned_cols=63  Identities=17%  Similarity=0.199  Sum_probs=43.5

Q ss_pred             cccccceeeccccccccee-ccCcccccCCCcceEeccCCcccccCCC-CCcCCCCcceEEEeccCCccccc
Q 036801          309 AFSKLNELRLLNLESLRSF-YSGYCALNFPSLERLLVDDCTNMEIFSR-GELSTPMLHKVQLNMWDEACWAW  378 (388)
Q Consensus       309 ~~~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~l~l~~~~~~~~~~  378 (388)
                      .+++|+.|++++| .+..+ +...  ..+++|++|++++| .++.++. .+..+++|+.++++   ++.|.+
T Consensus       468 ~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~---~N~~~~  532 (570)
T 2z63_A          468 ELRNLTFLDLSQC-QLEQLSPTAF--NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLH---TNPWDC  532 (570)
T ss_dssp             TCTTCCEEECTTS-CCCEECTTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC---SSCBCC
T ss_pred             cccCCCEEECCCC-ccccCChhhh--hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEec---CCcccC
Confidence            4678888888887 35555 3333  57888999999886 5666554 35678899999988   444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=1.2e-19  Score=174.98  Aligned_cols=306  Identities=14%  Similarity=0.063  Sum_probs=200.8

Q ss_pred             CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801            2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT   81 (388)
Q Consensus         2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~   81 (388)
                      ++++++|++|++++|.....+.+..+.   ++++|++|++++| .+..+....        +..+++|++|++.++ .+.
T Consensus        50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~---~l~~L~~L~Ls~n-~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~  116 (455)
T 3v47_A           50 FSRLQDLQFLKVEQQTPGLVIRNNTFR---GLSSLIILKLDYN-QFLQLETGA--------FNGLANLEVLTLTQC-NLD  116 (455)
T ss_dssp             TSSCTTCCEEECCCCSTTCEECTTTTT---TCTTCCEEECTTC-TTCEECTTT--------TTTCTTCCEEECTTS-CCB
T ss_pred             hccCccccEEECcCCcccceECccccc---ccccCCEEeCCCC-ccCccChhh--------ccCcccCCEEeCCCC-CCC
Confidence            467899999999998655566667778   8999999999998 455553321        667899999999875 465


Q ss_pred             c-ccCCCcccccCCCccEEEeecCCCceEe-cccccCCccccccCCccEEEEeecCcccccc----cc------------
Q 036801           82 S-FSTGDVHMLEFPSLKELWISRCPGFMVK-FKRTTNDLTKKVFPNLEELIVDAKYITTNKF----LF------------  143 (388)
Q Consensus        82 ~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~----~l------------  143 (388)
                      + .+... .+..+++|++|++++| .+..+ +...+     ..+++|++|++++|.+.....    .+            
T Consensus       117 ~~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          117 GAVLSGN-FFKPLTSLEMLVLRDN-NIKKIQPASFF-----LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             THHHHSS-TTTTCTTCCEEECCSS-BCCSCCCCGGG-----GGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             ccccCcc-cccCcccCCEEECCCC-ccCccCccccc-----CCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            4 22211 2556889999999888 44444 32223     578888888888876531100    00            


Q ss_pred             ------c-----------hhhccCccEeeccccccccccccchhHhh--cCCCccEEEE-EeccCCCCceeec-------
Q 036801          144 ------S-----------KDLLCKLKCLDVEFVDELTTILSLDDFLQ--RFHTLKVLQI-EGYNYWLPKEKVE-------  196 (388)
Q Consensus       144 ------p-----------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~l~~L~~L~l-~~~~l~~~~~~~~-------  196 (388)
                            +           ...+++|++|+++++....  ..+.....  ..++|+.|.+ .+...   ...+.       
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~  264 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE--SMAKRFFDAIAGTKIQSLILSNSYNM---GSSFGHTNFKDP  264 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH--HHHHHHHHHTTTCCEEEEECTTCTTT---SCCTTCCSSCCC
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccc--cchhhhhccccccceeeEeecccccc---ccccchhhhccC
Confidence                  0           0123578999998875432  22221211  2378888888 43222   11110       


Q ss_pred             -Cccc-----cccceeeeee-ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchh
Q 036801          197 -NGVE-----VIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFL  269 (388)
Q Consensus       197 -~~~~-----~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~  269 (388)
                       ...+     .+++..++.- .+.++.+ ..+..+++|+.|++++|......+..+..+++|++|+++++ .+..++.. 
T Consensus       265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-  341 (455)
T 3v47_A          265 DNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSR-  341 (455)
T ss_dssp             CTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGG-
T ss_pred             cccccccccccCceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChh-
Confidence             0111     1233222222 5666665 77888999999999998544444557789999999999976 56666544 


Q ss_pred             hhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcc
Q 036801          270 IAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTN  349 (388)
Q Consensus       270 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~  349 (388)
                      ....+++|++|+++++. ++.+....           +..+++|+.|++.++ .++.++... +..+++|++|++++++-
T Consensus       342 ~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          342 MFENLDKLEVLDLSYNH-IRALGDQS-----------FLGLPNLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             GGTTCTTCCEEECCSSC-CCEECTTT-----------TTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred             HhcCcccCCEEECCCCc-ccccChhh-----------ccccccccEEECCCC-ccccCCHhH-hccCCcccEEEccCCCc
Confidence            34578999999997763 54442211           224799999999996 677777654 36789999999998653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=9.4e-20  Score=180.04  Aligned_cols=131  Identities=18%  Similarity=0.199  Sum_probs=76.2

Q ss_pred             CCCccceEEecCCccccccC---CCCCCCCCcCEEEEecCCCceeecc-hhhhhccCccCEEeeccccccccccccCCCC
Q 036801          223 IMDNLVILRVSSCHHLINLV---PSSTSFQNLTTLEISHCNGLKNVLT-FLIAKTLVRLREMKIESCAMITEIVLADDDD  298 (388)
Q Consensus       223 ~l~~L~~L~l~~c~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~  298 (388)
                      .+++|+.|++++|......+   ..+..+++|++|+++++ .+..++. ......+++|++|+++++ .++.+...    
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~----  405 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDS----  405 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSC----
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChh----
Confidence            46777777777775443332   23466778888888765 4555542 123456788888888766 44444321    


Q ss_pred             CccccccceecccccceeecccccccceeccCc----------------ccccCCCcceEeccCCcccccCCCCCcCCCC
Q 036801          299 DHDAAKDEVIAFSKLNELRLLNLESLRSFYSGY----------------CALNFPSLERLLVDDCTNMEIFSRGELSTPM  362 (388)
Q Consensus       299 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----------------~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~  362 (388)
                              ...+++|+.|+++++. +..++...                +...+++|++|++++| +++.+|.. ..+++
T Consensus       406 --------~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~-~~l~~  474 (549)
T 2z81_A          406 --------CQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA-SLFPV  474 (549)
T ss_dssp             --------CCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG-GGCTT
T ss_pred             --------hcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCc-ccCcc
Confidence                    1123455555555432 22222110                0125678888888875 66777763 45788


Q ss_pred             cceEEEec
Q 036801          363 LHKVQLNM  370 (388)
Q Consensus       363 L~~l~l~~  370 (388)
                      |+.++++.
T Consensus       475 L~~L~Ls~  482 (549)
T 2z81_A          475 LLVMKISR  482 (549)
T ss_dssp             CCEEECCS
T ss_pred             CCEEecCC
Confidence            88888884

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=2.2e-19  Score=178.11  Aligned_cols=132  Identities=16%  Similarity=0.139  Sum_probs=58.1

Q ss_pred             CCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCcc
Q 036801          222 SIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHD  301 (388)
Q Consensus       222 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~  301 (388)
                      ..+++|+.|++++|. +..+++.+..+++|+.|+++++ .+...+.......+++|++|++++|. ++......      
T Consensus       370 ~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~------  440 (570)
T 2z63_A          370 FGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGI------  440 (570)
T ss_dssp             HTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSC-CEECCTTT------
T ss_pred             cccCccCEEECCCCc-cccccccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCc-ccccchhh------
Confidence            344555555555552 3333333445555555555543 23222221122345555555555443 21111100      


Q ss_pred             ccccceecccccceeeccccccc-ceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801          302 AAKDEVIAFSKLNELRLLNLESL-RSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN  369 (388)
Q Consensus       302 ~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~  369 (388)
                           ...+++|+.|++.+|.-. ..++...  ..+++|+.|++++|.--...|..+..+++|+.++++
T Consensus       441 -----~~~l~~L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  502 (570)
T 2z63_A          441 -----FNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA  502 (570)
T ss_dssp             -----TTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             -----hhcCCcCcEEECcCCcCccccchhhh--hcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence                 112455555555555322 1343322  445555555555543222224444455555555555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=2.7e-19  Score=181.32  Aligned_cols=64  Identities=19%  Similarity=0.226  Sum_probs=28.9

Q ss_pred             ccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           64 VIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        64 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                      ..+++|++|++.++ .+..+++..  +..+++|++|++++| .+...+...+     ..+++|++|++++|.+
T Consensus        94 ~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~~~~-----~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A           94 AFCTNLTELHLMSN-SIQKIKNNP--FVKQKNLITLDLSHN-GLSSTKLGTQ-----VQLENLQELLLSNNKI  157 (680)
T ss_dssp             TTCTTCSEEECCSS-CCCCCCSCT--TTTCTTCCEEECCSS-CCSCCCCCSS-----SCCTTCCEEECCSSCC
T ss_pred             ccCCCCCEEECCCC-ccCccChhH--ccccCCCCEEECCCC-cccccCchhh-----cccccCCEEEccCCcc
Confidence            34455555555442 344444332  344555555555554 2222222222     3455555555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.83  E-value=3.9e-19  Score=172.15  Aligned_cols=124  Identities=19%  Similarity=0.251  Sum_probs=72.9

Q ss_pred             CCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCc
Q 036801          221 SSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDH  300 (388)
Q Consensus       221 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~  300 (388)
                      +..+++|+.|++++| .++.+++ +..+++|+.|+++++ .+..++.   ...+++|+.|++++|. ++.+..       
T Consensus       261 ~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-------  326 (466)
T 1o6v_A          261 LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDISP-------  326 (466)
T ss_dssp             GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCGG-------
T ss_pred             hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCchh-------
Confidence            344555555555555 2333322 455566666666654 3444433   2356667777775552 332221       


Q ss_pred             cccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEec
Q 036801          301 DAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNM  370 (388)
Q Consensus       301 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~  370 (388)
                            ...+++|+.|++.+| .+..++.   +..+++|+.|++++|. +..++. ...+++|+.+++.+
T Consensus       327 ------~~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~  384 (466)
T 1o6v_A          327 ------VSSLTKLQRLFFYNN-KVSDVSS---LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLND  384 (466)
T ss_dssp             ------GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCC
T ss_pred             ------hccCccCCEeECCCC-ccCCchh---hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccC
Confidence                  124678888888887 4555532   2578899999998875 444333 55778999998883

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=5.3e-20  Score=189.04  Aligned_cols=57  Identities=18%  Similarity=0.244  Sum_probs=33.4

Q ss_pred             ccccceeecccccccceeccCcccccCCCcceEeccC------CcccccCCCCCcCCCCcceEEEe
Q 036801          310 FSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDD------CTNMEIFSRGELSTPMLHKVQLN  369 (388)
Q Consensus       310 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~------c~~l~~l~~~~~~~~~L~~l~l~  369 (388)
                      +++|+.|+++++ .+..++...  ..+++|+.|++++      |.....+|..+..+++|+.|+++
T Consensus       752 l~~L~~L~Ls~N-~L~~lp~~l--~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls  814 (876)
T 4ecn_A          752 LPYLSNMDVSYN-CFSSFPTQP--LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG  814 (876)
T ss_dssp             CTTCCEEECCSS-CCSSCCCGG--GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             CCCcCEEEeCCC-CCCccchhh--hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence            466666666665 344455443  4566666666654      22334556666666677777666

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.83  E-value=1.5e-19  Score=168.17  Aligned_cols=275  Identities=16%  Similarity=0.156  Sum_probs=197.4

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+++|++|++.++ .+..++.          +..+++|++|++.++ .+.+++.    +..+++|++|++++| .++.++
T Consensus        42 ~l~~L~~L~l~~~-~i~~~~~----------~~~~~~L~~L~l~~n-~i~~~~~----~~~l~~L~~L~L~~n-~i~~~~  104 (347)
T 4fmz_A           42 ELESITKLVVAGE-KVASIQG----------IEYLTNLEYLNLNGN-QITDISP----LSNLVKLTNLYIGTN-KITDIS  104 (347)
T ss_dssp             HHTTCSEEECCSS-CCCCCTT----------GGGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCCCG
T ss_pred             hcccccEEEEeCC-ccccchh----------hhhcCCccEEEccCC-ccccchh----hhcCCcCCEEEccCC-cccCch
Confidence            7999999999998 4555432          567999999999986 6776653    346999999999998 666554


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccc-hhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCC
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS-KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWL  190 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  190 (388)
                      .  +     ..+++|++|++++|.+    ..++ ...+++|++|+++++.... . .+  .+..+++|+.|++..+.+  
T Consensus       105 ~--~-----~~l~~L~~L~l~~n~i----~~~~~~~~l~~L~~L~l~~n~~~~-~-~~--~~~~l~~L~~L~l~~~~~--  167 (347)
T 4fmz_A          105 A--L-----QNLTNLRELYLNEDNI----SDISPLANLTKMYSLNLGANHNLS-D-LS--PLSNMTGLNYLTVTESKV--  167 (347)
T ss_dssp             G--G-----TTCTTCSEEECTTSCC----CCCGGGTTCTTCCEEECTTCTTCC-C-CG--GGTTCTTCCEEECCSSCC--
T ss_pred             H--H-----cCCCcCCEEECcCCcc----cCchhhccCCceeEEECCCCCCcc-c-cc--chhhCCCCcEEEecCCCc--
Confidence            2  2     5899999999999887    3333 4568999999999987665 2 22  478899999999955565  


Q ss_pred             CceeecCccccccceeeeee---ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecc
Q 036801          191 PKEKVENGVEVIIREAYNCY---DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLT  267 (388)
Q Consensus       191 ~~~~~~~~~~~~L~~~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~  267 (388)
                       ....+-+..++|+  .+++   .+..+   ..+..+++|+.|++.+| .++.+++ +..+++|+.|++++| .+..++.
T Consensus       168 -~~~~~~~~l~~L~--~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~  238 (347)
T 4fmz_A          168 -KDVTPIANLTDLY--SLSLNYNQIEDI---SPLASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIGNN-KITDLSP  238 (347)
T ss_dssp             -CCCGGGGGCTTCS--EEECTTSCCCCC---GGGGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG
T ss_pred             -CCchhhccCCCCC--EEEccCCccccc---ccccCCCccceeecccC-CCCCCch-hhcCCcCCEEEccCC-ccCCCcc
Confidence             3332222222333  4444   44444   33667789999999887 4444433 678889999999876 5555554


Q ss_pred             hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCC
Q 036801          268 FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDC  347 (388)
Q Consensus       268 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c  347 (388)
                         ...+++|++|+++++ .++.+..             ...+++|+.|++.+| .+..++.   +..+++|+.|++++|
T Consensus       239 ---~~~l~~L~~L~l~~n-~l~~~~~-------------~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          239 ---LANLSQLTWLEIGTN-QISDINA-------------VKDLTKLKMLNVGSN-QISDISV---LNNLSQLNSLFLNNN  297 (347)
T ss_dssp             ---GTTCTTCCEEECCSS-CCCCCGG-------------GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEEECCSS
T ss_pred             ---hhcCCCCCEEECCCC-ccCCChh-------------HhcCCCcCEEEccCC-ccCCChh---hcCCCCCCEEECcCC
Confidence               357899999999776 3444321             234689999999997 5666642   367899999999998


Q ss_pred             cccccCCCCCcCCCCcceEEEec
Q 036801          348 TNMEIFSRGELSTPMLHKVQLNM  370 (388)
Q Consensus       348 ~~l~~l~~~~~~~~~L~~l~l~~  370 (388)
                      .--...+..+..+++|+.+++++
T Consensus       298 ~l~~~~~~~l~~l~~L~~L~L~~  320 (347)
T 4fmz_A          298 QLGNEDMEVIGGLTNLTTLFLSQ  320 (347)
T ss_dssp             CCCGGGHHHHHTCTTCSEEECCS
T ss_pred             cCCCcChhHhhccccCCEEEccC
Confidence            54334445556789999999983

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=1e-19  Score=181.61  Aligned_cols=281  Identities=15%  Similarity=0.153  Sum_probs=207.8

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+.+++.+++.++ .+..++...        +..+++|++|++.++ .+..+++..  +..+++|++|++++| .+..++
T Consensus        49 ~l~~l~~l~l~~~-~l~~lp~~~--------~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~  115 (597)
T 3oja_B           49 TLNNQKIVTFKNS-TMRKLPAAL--------LDSFRQVELLNLNDL-QIEEIDTYA--FAYAHTIQKLYMGFN-AIRYLP  115 (597)
T ss_dssp             GGCCCSEEEESSC-EESEECTHH--------HHHCCCCSEEECTTS-CCCEECTTT--TTTCTTCCEEECCSS-CCCCCC
T ss_pred             cCCCceEEEeeCC-CCCCcCHHH--------HccCCCCcEEECCCC-CCCCCChHH--hcCCCCCCEEECCCC-cCCCCC
Confidence            4788999999998 577776642        457899999999985 688887765  778999999999998 577777


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                      +..+     ..+++|++|++++|.+    ..+|.   +.+++|++|+++++....   .+...+..+++|+.|++..+.+
T Consensus       116 ~~~~-----~~l~~L~~L~L~~n~l----~~l~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l  183 (597)
T 3oja_B          116 PHVF-----QNVPLLTVLVLERNDL----SSLPRGIFHNTPKLTTLSMSNNNLER---IEDDTFQATTSLQNLQLSSNRL  183 (597)
T ss_dssp             TTTT-----TTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCB---CCTTTTTTCTTCCEEECTTSCC
T ss_pred             HHHH-----cCCCCCCEEEeeCCCC----CCCCHHHhccCCCCCEEEeeCCcCCC---CChhhhhcCCcCcEEECcCCCC
Confidence            6655     6899999999999987    56665   457899999999986433   4444688899999999966677


Q ss_pred             CCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecc
Q 036801          189 WLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLT  267 (388)
Q Consensus       189 ~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~  267 (388)
                         + .++.+.+++|....+.. .+.++      ...++|+.|++++|. +..++..  ..++|+.|+++++ .+...+ 
T Consensus       184 ---~-~~~~~~l~~L~~L~l~~n~l~~l------~~~~~L~~L~ls~n~-l~~~~~~--~~~~L~~L~L~~n-~l~~~~-  248 (597)
T 3oja_B          184 ---T-HVDLSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNS-INVVRGP--VNVELTILKLQHN-NLTDTA-  248 (597)
T ss_dssp             ---S-BCCGGGCTTCSEEECCSSCCSEE------ECCTTCSEEECCSSC-CCEEECS--CCSCCCEEECCSS-CCCCCG-
T ss_pred             ---C-CcChhhhhhhhhhhcccCccccc------cCCchhheeeccCCc-ccccccc--cCCCCCEEECCCC-CCCCCh-
Confidence               3 23444444444333332 33333      245789999998874 4444432  3468999999976 455543 


Q ss_pred             hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCC
Q 036801          268 FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDC  347 (388)
Q Consensus       268 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c  347 (388)
                        ....+++|+.|+++++. ++.+....           +..+++|+.|+++++ .+..++...  ..+++|+.|++++|
T Consensus       249 --~l~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~Ls~N  311 (597)
T 3oja_B          249 --WLLNYPGLVEVDLSYNE-LEKIMYHP-----------FVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHN  311 (597)
T ss_dssp             --GGGGCTTCSEEECCSSC-CCEEESGG-----------GTTCSSCCEEECTTS-CCCEEECSS--SCCTTCCEEECCSS
T ss_pred             --hhccCCCCCEEECCCCc-cCCCCHHH-----------hcCccCCCEEECCCC-CCCCCCccc--ccCCCCcEEECCCC
Confidence              34588999999997764 44442211           224789999999996 677887655  67899999999986


Q ss_pred             cccccCCCCCcCCCCcceEEEec
Q 036801          348 TNMEIFSRGELSTPMLHKVQLNM  370 (388)
Q Consensus       348 ~~l~~l~~~~~~~~~L~~l~l~~  370 (388)
                       .+..+|..+..+++|+.|+++.
T Consensus       312 -~l~~i~~~~~~l~~L~~L~L~~  333 (597)
T 3oja_B          312 -HLLHVERNQPQFDRLENLYLDH  333 (597)
T ss_dssp             -CCCCCGGGHHHHTTCSEEECCS
T ss_pred             -CCCccCcccccCCCCCEEECCC
Confidence             6778888777889999999984

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.83  E-value=1.9e-19  Score=173.52  Aligned_cols=303  Identities=16%  Similarity=0.102  Sum_probs=203.2

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      +.+++|++|+++++ .++.+ | .++   .+++|++|++++| .+..++           +..+++|++|++.++ .+..
T Consensus        39 ~~l~~L~~L~Ls~n-~l~~~-~-~l~---~l~~L~~L~Ls~n-~l~~~~-----------~~~l~~L~~L~Ls~N-~l~~   99 (457)
T 3bz5_A           39 EQLATLTSLDCHNS-SITDM-T-GIE---KLTGLTKLICTSN-NITTLD-----------LSQNTNLTYLACDSN-KLTN   99 (457)
T ss_dssp             HHHTTCCEEECCSS-CCCCC-T-TGG---GCTTCSEEECCSS-CCSCCC-----------CTTCTTCSEEECCSS-CCSC
T ss_pred             hHcCCCCEEEccCC-CcccC-h-hhc---ccCCCCEEEccCC-cCCeEc-----------cccCCCCCEEECcCC-CCce
Confidence            45789999999986 56655 4 577   8999999999998 465542           457899999999975 5776


Q ss_pred             ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccc
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDEL  162 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~  162 (388)
                      ++     ++.+++|++|++++| .++.++   +     ..+++|++|++++|.+    ..++.+.+++|++|+++.+...
T Consensus       100 ~~-----~~~l~~L~~L~L~~N-~l~~l~---~-----~~l~~L~~L~l~~N~l----~~l~l~~l~~L~~L~l~~n~~~  161 (457)
T 3bz5_A          100 LD-----VTPLTKLTYLNCDTN-KLTKLD---V-----SQNPLLTYLNCARNTL----TEIDVSHNTQLTELDCHLNKKI  161 (457)
T ss_dssp             CC-----CTTCTTCCEEECCSS-CCSCCC---C-----TTCTTCCEEECTTSCC----SCCCCTTCTTCCEEECTTCSCC
T ss_pred             ee-----cCCCCcCCEEECCCC-cCCeec---C-----CCCCcCCEEECCCCcc----ceeccccCCcCCEEECCCCCcc
Confidence            64     346999999999998 566553   2     5889999999999887    4567778999999999998655


Q ss_pred             cccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCcccccc
Q 036801          163 TTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINL  241 (388)
Q Consensus       163 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l  241 (388)
                      . ..    .+..+++|+.|++..+.+   +. ++.+..++|+...+.- .+.++    .+..+++|+.|++++| .++.+
T Consensus       162 ~-~~----~~~~l~~L~~L~ls~n~l---~~-l~l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N-~l~~i  227 (457)
T 3bz5_A          162 T-KL----DVTPQTQLTTLDCSFNKI---TE-LDVSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSN-KLTEI  227 (457)
T ss_dssp             C-CC----CCTTCTTCCEEECCSSCC---CC-CCCTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSS-CCSCC
T ss_pred             c-cc----ccccCCcCCEEECCCCcc---ce-eccccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCC-ccccc
Confidence            4 32    356789999999966777   33 4433333333222222 33333    3567789999999887 45556


Q ss_pred             CCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccc
Q 036801          242 VPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNL  321 (388)
Q Consensus       242 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  321 (388)
                      |  +..+++|+.|+++++ .+..++.    ..+++|+.|++.. +.++.+....... ....  ....+++|+.|++++|
T Consensus       228 p--~~~l~~L~~L~l~~N-~l~~~~~----~~l~~L~~L~l~~-n~L~~L~l~~n~~-~~~~--~~~~l~~L~~L~Ls~n  296 (457)
T 3bz5_A          228 D--VTPLTQLTYFDCSVN-PLTELDV----STLSKLTTLHCIQ-TDLLEIDLTHNTQ-LIYF--QAEGCRKIKELDVTHN  296 (457)
T ss_dssp             C--CTTCTTCSEEECCSS-CCSCCCC----TTCTTCCEEECTT-CCCSCCCCTTCTT-CCEE--ECTTCTTCCCCCCTTC
T ss_pred             C--ccccCCCCEEEeeCC-cCCCcCH----HHCCCCCEEeccC-CCCCEEECCCCcc-CCcc--cccccccCCEEECCCC
Confidence            4  678889999999865 5665553    2456666665532 2333322111000 0000  0113588999999988


Q ss_pred             cccceeccCc------ccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEec
Q 036801          322 ESLRSFYSGY------CALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNM  370 (388)
Q Consensus       322 ~~l~~l~~~~------~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~  370 (388)
                      ..++.++...      .+..+++|+.|+++++ +++.++  +..+++|+.++++.
T Consensus       297 ~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~  348 (457)
T 3bz5_A          297 TQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVN  348 (457)
T ss_dssp             TTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCS
T ss_pred             cccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCC
Confidence            7666665321      1234567777777763 566664  55778899998873

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.83  E-value=2e-18  Score=178.96  Aligned_cols=114  Identities=11%  Similarity=0.052  Sum_probs=58.3

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      +++++|++|++++|.....+.|..|+   ++++|++|+|++| .+..+....        +..+++|++|++.++ .+.+
T Consensus        45 ~~l~~L~~LdLs~n~~~~~i~~~~f~---~L~~L~~L~Ls~N-~l~~~~p~~--------~~~l~~L~~L~Ls~n-~l~~  111 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLTIDKEAFR---NLPNLRILDLGSS-KIYFLHPDA--------FQGLFHLFELRLYFC-GLSD  111 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCEECTTTTS---SCTTCCEEECTTC-CCCEECTTS--------SCSCSSCCCEECTTC-CCSS
T ss_pred             cccccCeEEeCCCCCCccccCHHHhc---CCCCCCEEECCCC-cCcccCHhH--------ccCCcccCEeeCcCC-CCCc
Confidence            45666666666666555555555565   5666667766666 344432211        445666666666653 3433


Q ss_pred             -ccCCCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCc
Q 036801           83 -FSTGDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        83 -~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                       .+... .+..+++|++|++++| .+..... ..+     ..+++|++|++++|.+
T Consensus       112 ~~~~~~-~~~~L~~L~~L~Ls~N-~l~~~~~~~~~-----~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          112 AVLKDG-YFRNLKALTRLDLSKN-QIRSLYLHPSF-----GKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             CCSTTC-CCSSCSSCCEEEEESC-CCCCCCCCGGG-----GTCSSCCEEEEESSCC
T ss_pred             ccccCc-cccccCCCCEEECCCC-cccccccchhH-----hhCCCCCEEECCCCcC
Confidence             12111 1344666666666665 2322211 112     3555566666555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=3.1e-19  Score=164.73  Aligned_cols=225  Identities=17%  Similarity=0.180  Sum_probs=136.4

Q ss_pred             CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801            5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS   84 (388)
Q Consensus         5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~   84 (388)
                      .+++++|+++++. ++.+ |..++   .+++|++|++++| .+..++..         +..+++|++|++.++ .+..++
T Consensus        80 ~~~l~~L~L~~n~-l~~l-p~~l~---~l~~L~~L~L~~n-~l~~lp~~---------~~~l~~L~~L~Ls~n-~l~~lp  143 (328)
T 4fcg_A           80 QPGRVALELRSVP-LPQF-PDQAF---RLSHLQHMTIDAA-GLMELPDT---------MQQFAGLETLTLARN-PLRALP  143 (328)
T ss_dssp             STTCCEEEEESSC-CSSC-CSCGG---GGTTCSEEEEESS-CCCCCCSC---------GGGGTTCSEEEEESC-CCCCCC
T ss_pred             ccceeEEEccCCC-chhc-Chhhh---hCCCCCEEECCCC-CccchhHH---------HhccCCCCEEECCCC-ccccCc
Confidence            4678888888854 5554 66677   7888888888887 45565554         667888888888874 566665


Q ss_pred             CCCcccccCCCccEEEeecCCCceEecccccCC---ccccccCCccEEEEeecCccccccccch--hhccCccEeecccc
Q 036801           85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTND---LTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFV  159 (388)
Q Consensus        85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~  159 (388)
                      ..   +..+++|++|++++|..+..+|......   .....+++|++|++++|.+    ..+|.  +.+++|++|+++++
T Consensus       144 ~~---l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l----~~lp~~l~~l~~L~~L~L~~N  216 (328)
T 4fcg_A          144 AS---IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI----RSLPASIANLQNLKSLKIRNS  216 (328)
T ss_dssp             GG---GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC----CCCCGGGGGCTTCCEEEEESS
T ss_pred             HH---HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc----CcchHhhcCCCCCCEEEccCC
Confidence            44   5678888888888886666555543100   0002367777777777765    23333  33556666666665


Q ss_pred             ccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcccc
Q 036801          160 DELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLI  239 (388)
Q Consensus       160 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~  239 (388)
                      ....   ++. .+..+++|+.|++..+.+   .+.+|                      ..+..+++|+.|++++|...+
T Consensus       217 ~l~~---l~~-~l~~l~~L~~L~Ls~n~~---~~~~p----------------------~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          217 PLSA---LGP-AIHHLPKLEELDLRGCTA---LRNYP----------------------PIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             CCCC---CCG-GGGGCTTCCEEECTTCTT---CCBCC----------------------CCTTCCCCCCEEECTTCTTCC
T ss_pred             CCCc---Cch-hhccCCCCCEEECcCCcc---hhhhH----------------------HHhcCCCCCCEEECCCCCchh
Confidence            4322   333 355566666666622222   12222                      344455666666666666666


Q ss_pred             ccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeec
Q 036801          240 NLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIE  283 (388)
Q Consensus       240 ~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~  283 (388)
                      .+|..+..+++|+.|++++|+.+..+|..  ...+++|+.+++.
T Consensus       268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~--l~~L~~L~~l~l~  309 (328)
T 4fcg_A          268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSL--IAQLPANCIILVP  309 (328)
T ss_dssp             BCCTTGGGCTTCCEEECTTCTTCCCCCGG--GGGSCTTCEEECC
T ss_pred             hcchhhhcCCCCCEEeCCCCCchhhccHH--HhhccCceEEeCC
Confidence            66655666666666666666555555542  3455666666553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.80  E-value=7e-18  Score=155.80  Aligned_cols=247  Identities=16%  Similarity=0.185  Sum_probs=123.9

Q ss_pred             ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801           35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT  114 (388)
Q Consensus        35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  114 (388)
                      +++.++++++ .++.++..           ..++|+.|++.++ ++..++...  +..+++|++|++++| .++.+.+..
T Consensus        32 ~l~~l~~~~~-~l~~lp~~-----------~~~~l~~L~L~~n-~i~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~   95 (330)
T 1xku_A           32 HLRVVQCSDL-GLEKVPKD-----------LPPDTALLDLQNN-KITEIKDGD--FKNLKNLHTLILINN-KISKISPGA   95 (330)
T ss_dssp             ETTEEECTTS-CCCSCCCS-----------CCTTCCEEECCSS-CCCCBCTTT--TTTCTTCCEEECCSS-CCCCBCTTT
T ss_pred             CCeEEEecCC-CccccCcc-----------CCCCCeEEECCCC-cCCEeChhh--hccCCCCCEEECCCC-cCCeeCHHH
Confidence            5666666655 34444432           1356666666653 466555543  455666777777666 444443333


Q ss_pred             cCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCcee
Q 036801          115 TNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEK  194 (388)
Q Consensus       115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  194 (388)
                      +     ..+++|++|++++|.+    ..+|...+++|++|+++++....   .+...+..+++|+.|++..+.+   +..
T Consensus        96 ~-----~~l~~L~~L~Ls~n~l----~~l~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l---~~~  160 (330)
T 1xku_A           96 F-----APLVKLERLYLSKNQL----KELPEKMPKTLQELRVHENEITK---VRKSVFNGLNQMIVVELGTNPL---KSS  160 (330)
T ss_dssp             T-----TTCTTCCEEECCSSCC----SBCCSSCCTTCCEEECCSSCCCB---BCHHHHTTCTTCCEEECCSSCC---CGG
T ss_pred             h-----cCCCCCCEEECCCCcC----CccChhhcccccEEECCCCcccc---cCHhHhcCCccccEEECCCCcC---Ccc
Confidence            3     4566677777766655    45555555667777766654322   3334566667777776644444   110


Q ss_pred             -ecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhc
Q 036801          195 -VENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKT  273 (388)
Q Consensus       195 -~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  273 (388)
                       ..                    + ..+..+++|+.|++++| .++.+|...  +++|+.|+++++ .+..+... ....
T Consensus       161 ~~~--------------------~-~~~~~l~~L~~L~l~~n-~l~~l~~~~--~~~L~~L~l~~n-~l~~~~~~-~~~~  214 (330)
T 1xku_A          161 GIE--------------------N-GAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGN-KITKVDAA-SLKG  214 (330)
T ss_dssp             GBC--------------------T-TGGGGCTTCCEEECCSS-CCCSCCSSC--CTTCSEEECTTS-CCCEECTG-GGTT
T ss_pred             CcC--------------------h-hhccCCCCcCEEECCCC-ccccCCccc--cccCCEEECCCC-cCCccCHH-HhcC
Confidence             00                    0 23334555666666554 233343322  245566666543 34444322 2234


Q ss_pred             cCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccC
Q 036801          274 LVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIF  353 (388)
Q Consensus       274 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l  353 (388)
                      +++|++|+++++. ++.+....           ...+++|++|+++++ .+..++...  ..+++|++|+++++ .++.+
T Consensus       215 l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~l~~lp~~l--~~l~~L~~L~l~~N-~i~~~  278 (330)
T 1xku_A          215 LNNLAKLGLSFNS-ISAVDNGS-----------LANTPHLRELHLNNN-KLVKVPGGL--ADHKYIQVVYLHNN-NISAI  278 (330)
T ss_dssp             CTTCCEEECCSSC-CCEECTTT-----------GGGSTTCCEEECCSS-CCSSCCTTT--TTCSSCCEEECCSS-CCCCC
T ss_pred             CCCCCEEECCCCc-CceeChhh-----------ccCCCCCCEEECCCC-cCccCChhh--ccCCCcCEEECCCC-cCCcc
Confidence            5556666664432 22221100           112455566666554 344554433  44556666666553 34444


Q ss_pred             C
Q 036801          354 S  354 (388)
Q Consensus       354 ~  354 (388)
                      +
T Consensus       279 ~  279 (330)
T 1xku_A          279 G  279 (330)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=7e-18  Score=174.85  Aligned_cols=317  Identities=14%  Similarity=0.078  Sum_probs=211.0

Q ss_pred             CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801            5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS   84 (388)
Q Consensus         5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~   84 (388)
                      .+++++|++++| .++.+.|..++   ++++|++|++++|.....++...        +..+++|++|+++++ .+....
T Consensus        23 p~~l~~LdLs~N-~i~~i~~~~~~---~l~~L~~LdLs~n~~~~~i~~~~--------f~~L~~L~~L~Ls~N-~l~~~~   89 (844)
T 3j0a_A           23 LNTTERLLLSFN-YIRTVTASSFP---FLEQLQLLELGSQYTPLTIDKEA--------FRNLPNLRILDLGSS-KIYFLH   89 (844)
T ss_dssp             CTTCCEEEEESC-CCCEECSSSCS---SCCSCSEEEECTTCCCCEECTTT--------TSSCTTCCEEECTTC-CCCEEC
T ss_pred             CCCcCEEECCCC-cCCccChhHCc---ccccCeEEeCCCCCCccccCHHH--------hcCCCCCCEEECCCC-cCcccC
Confidence            368999999985 57777788888   89999999999996666653332        678999999999985 688776


Q ss_pred             CCCcccccCCCccEEEeecCCCceE-eccc-ccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccc
Q 036801           85 TGDVHMLEFPSLKELWISRCPGFMV-KFKR-TTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDEL  162 (388)
Q Consensus        85 ~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~-~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~  162 (388)
                      +..  +..+++|++|++++| .+.. .+.. .+     ..+++|++|++++|.+......-..+.+++|++|+++++...
T Consensus        90 p~~--~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-----~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           90 PDA--FQGLFHLFELRLYFC-GLSDAVLKDGYF-----RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             TTS--SCSCSSCCCEECTTC-CCSSCCSTTCCC-----SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             HhH--ccCCcccCEeeCcCC-CCCcccccCccc-----cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            665  778999999999998 4443 3332 23     689999999999988731110112356899999999987543


Q ss_pred             cccccchhHhhcC--CCccEEEEEeccCCCCceeecCcc------ccc--cceeeeee-ccce-----e-----------
Q 036801          163 TTILSLDDFLQRF--HTLKVLQIEGYNYWLPKEKVENGV------EVI--IREAYNCY-DMKY-----I-----------  215 (388)
Q Consensus       163 ~~~~~~~~~~~~l--~~L~~L~l~~~~l~~~~~~~~~~~------~~~--L~~~~l~l-~l~~-----i-----------  215 (388)
                      .  ..+ ..+..+  ++|+.|++..+.+   ....+..+      +.+  |+..++.- .+..     +           
T Consensus       162 ~--~~~-~~l~~l~~~~L~~L~L~~n~l---~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~  235 (844)
T 3j0a_A          162 L--VCE-HELEPLQGKTLSFFSLAANSL---YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS  235 (844)
T ss_dssp             C--CCS-GGGHHHHHCSSCCCEECCSBS---CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred             e--eCH-HHcccccCCccceEECCCCcc---ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence            2  222 244445  8999999955565   33333211      111  22211111 1100     0           


Q ss_pred             --------------------ccccCCCC--CCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhc
Q 036801          216 --------------------LKHESSSI--MDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKT  273 (388)
Q Consensus       216 --------------------~~~~~l~~--l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  273 (388)
                                          .. ..+..  .++|+.|++++|......+..+..+++|+.|+++++ .+..++.. ....
T Consensus       236 L~l~~~~~~~~~~~~~l~~~~~-~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~-~~~~  312 (844)
T 3j0a_A          236 LILAHHIMGAGFGFHNIKDPDQ-NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADE-AFYG  312 (844)
T ss_dssp             EECCSSCCBCSSSCSSSTTGGG-TTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEECTT-TTTT
T ss_pred             eecccccccccccccccCCCCh-hhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCCChH-HhcC
Confidence                                00 11111  268999999887544444556788899999999875 56666443 3457


Q ss_pred             cCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccC
Q 036801          274 LVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIF  353 (388)
Q Consensus       274 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l  353 (388)
                      +++|++|+++++. ++.+....           ...+++|+.|+++++ .+..++... +..+++|+.|+++++ .++.+
T Consensus       313 l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~i  377 (844)
T 3j0a_A          313 LDNLQVLNLSYNL-LGELYSSN-----------FYGLPKVAYIDLQKN-HIAIIQDQT-FKFLEKLQTLDLRDN-ALTTI  377 (844)
T ss_dssp             CSSCCEEEEESCC-CSCCCSCS-----------CSSCTTCCEEECCSC-CCCCCCSSC-SCSCCCCCEEEEETC-CSCCC
T ss_pred             CCCCCEEECCCCC-CCccCHHH-----------hcCCCCCCEEECCCC-CCCccChhh-hcCCCCCCEEECCCC-CCCcc
Confidence            8899999997663 44332211           234689999999987 567666543 367899999999985 55555


Q ss_pred             CCCCcCCCCcceEEEec
Q 036801          354 SRGELSTPMLHKVQLNM  370 (388)
Q Consensus       354 ~~~~~~~~~L~~l~l~~  370 (388)
                      +.    +++|+.+.+..
T Consensus       378 ~~----~~~L~~L~l~~  390 (844)
T 3j0a_A          378 HF----IPSIPDIFLSG  390 (844)
T ss_dssp             SS----CCSCSEEEEES
T ss_pred             cC----CCCcchhccCC
Confidence            44    57788887773

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.79  E-value=7.4e-18  Score=168.98  Aligned_cols=144  Identities=16%  Similarity=0.104  Sum_probs=96.5

Q ss_pred             CCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCC
Q 036801          220 SSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDD  299 (388)
Q Consensus       220 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~  299 (388)
                      .+..+++++.++++.+......+.....+++|+.|+++++......... ....+++|++|+++++ .++.+....    
T Consensus       440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N-~L~~l~~~~----  513 (635)
T 4g8a_A          440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQC-QLEQLSPTA----  513 (635)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTS-CCCEECTTT----
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCC-ccCCcChHH----
Confidence            3445566666666665433333344567788888888876544443332 3456788999999776 455553221    


Q ss_pred             ccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCC-CCCcCC-CCcceEEEeccCCcccc
Q 036801          300 HDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFS-RGELST-PMLHKVQLNMWDEACWA  377 (388)
Q Consensus       300 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~-~~L~~l~l~~~~~~~~~  377 (388)
                             +..+++|+.|+++++ ++..++... +..+++|+.|+++++ ++..++ ..+..+ ++|+.|++.   ++.|.
T Consensus       514 -------f~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~---~Np~~  580 (635)
T 4g8a_A          514 -------FNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLT---QNDFA  580 (635)
T ss_dssp             -------TTTCTTCCEEECTTS-CCCBCCCGG-GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECT---TCCBC
T ss_pred             -------HcCCCCCCEEECCCC-cCCCCChhH-HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEee---CCCCc
Confidence                   224689999999986 677776543 367899999999985 566554 445455 689999999   88888


Q ss_pred             cccCc
Q 036801          378 WKEGL  382 (388)
Q Consensus       378 ~~~~~  382 (388)
                      |+.++
T Consensus       581 C~C~~  585 (635)
T 4g8a_A          581 CTCEH  585 (635)
T ss_dssp             CSGGG
T ss_pred             ccCCc
Confidence            77654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.79  E-value=2.7e-18  Score=158.78  Aligned_cols=283  Identities=11%  Similarity=0.109  Sum_probs=164.5

Q ss_pred             ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801           35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT  114 (388)
Q Consensus        35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  114 (388)
                      +++.++++++ .++.+|..           ..++|++|++.++ .+..+++..  +..+++|++|++++| .++.+.+..
T Consensus        34 ~l~~l~~~~~-~l~~ip~~-----------~~~~l~~L~l~~n-~i~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~   97 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVPKE-----------ISPDTTLLDLQNN-DISELRKDD--FKGLQHLYALVLVNN-KISKIHEKA   97 (332)
T ss_dssp             ETTEEECCSS-CCSSCCSC-----------CCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSS-CCCEECGGG
T ss_pred             cCCEEECCCC-CccccCCC-----------CCCCCeEEECCCC-cCCccCHhH--hhCCCCCcEEECCCC-ccCccCHhH
Confidence            6888888877 46665543           2467888888874 577776654  667888888888887 566664444


Q ss_pred             cCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCce-
Q 036801          115 TNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKE-  193 (388)
Q Consensus       115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-  193 (388)
                      +     ..+++|++|++++|.+    ..+|....++|++|+++++....   ++...+..+++|+.|++..+.+   +. 
T Consensus        98 ~-----~~l~~L~~L~L~~n~l----~~l~~~~~~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~l~~n~l---~~~  162 (332)
T 2ft3_A           98 F-----SPLRKLQKLYISKNHL----VEIPPNLPSSLVELRIHDNRIRK---VPKGVFSGLRNMNCIEMGGNPL---ENS  162 (332)
T ss_dssp             S-----TTCTTCCEEECCSSCC----CSCCSSCCTTCCEEECCSSCCCC---CCSGGGSSCSSCCEEECCSCCC---BGG
T ss_pred             h-----hCcCCCCEEECCCCcC----CccCccccccCCEEECCCCccCc---cCHhHhCCCccCCEEECCCCcc---ccC
Confidence            4     5788888888888876    56666666888888888875433   4444677888888888855555   21 


Q ss_pred             eecCccccccceeeeee---ccceeccccCCCCCCccceEEecCCccccccC-CCCCCCCCcCEEEEecCCCceeecchh
Q 036801          194 KVENGVEVIIREAYNCY---DMKYILKHESSSIMDNLVILRVSSCHHLINLV-PSSTSFQNLTTLEISHCNGLKNVLTFL  269 (388)
Q Consensus       194 ~~~~~~~~~L~~~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~  269 (388)
                      ......+..+.-..+.+   .+..++.  .+  .++|++|+++++. ++.++ ..+..+++|+.|+++++ .+..++...
T Consensus       163 ~~~~~~~~~l~L~~L~l~~n~l~~l~~--~~--~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~  236 (332)
T 2ft3_A          163 GFEPGAFDGLKLNYLRISEAKLTGIPK--DL--PETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENGS  236 (332)
T ss_dssp             GSCTTSSCSCCCSCCBCCSSBCSSCCS--SS--CSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTG
T ss_pred             CCCcccccCCccCEEECcCCCCCccCc--cc--cCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChhH
Confidence            11111111110012222   3333332  11  1567777776663 33332 44566677777777654 455444332


Q ss_pred             hhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCccc-----ccCCCcceEec
Q 036801          270 IAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCA-----LNFPSLERLLV  344 (388)
Q Consensus       270 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~-----~~~~~L~~L~l  344 (388)
                       ...+++|++|+++++ .++.+...            ...+++|+.|++.++ .+..++...+.     ...+.|+.|++
T Consensus       237 -~~~l~~L~~L~L~~N-~l~~lp~~------------l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l  301 (332)
T 2ft3_A          237 -LSFLPTLRELHLDNN-KLSRVPAG------------LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISL  301 (332)
T ss_dssp             -GGGCTTCCEEECCSS-CCCBCCTT------------GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred             -hhCCCCCCEEECCCC-cCeecChh------------hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEe
Confidence             345677777777554 34433221            123567777777764 35555433211     11456677777


Q ss_pred             cCCccc--ccCCCCCcCCCCcceEEEe
Q 036801          345 DDCTNM--EIFSRGELSTPMLHKVQLN  369 (388)
Q Consensus       345 ~~c~~l--~~l~~~~~~~~~L~~l~l~  369 (388)
                      .+++..  ...|..+..++.|+.++++
T Consensus       302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~  328 (332)
T 2ft3_A          302 FNNPVPYWEVQPATFRCVTDRLAIQFG  328 (332)
T ss_dssp             CSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred             ecCcccccccCcccccccchhhhhhcc
Confidence            766532  2223334455667776665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.79  E-value=4.4e-18  Score=157.02  Aligned_cols=227  Identities=16%  Similarity=0.157  Sum_probs=162.6

Q ss_pred             CCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeeccccccccccccchh
Q 036801           93 FPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFVDELTTILSLDD  170 (388)
Q Consensus        93 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~~~~~~~~~~~~  170 (388)
                      .++++.|+++++ .+..+|...      ..+++|++|++++|.+    ..+|.  +.+++|++|+++++....   +|. 
T Consensus        80 ~~~l~~L~L~~n-~l~~lp~~l------~~l~~L~~L~L~~n~l----~~lp~~~~~l~~L~~L~Ls~n~l~~---lp~-  144 (328)
T 4fcg_A           80 QPGRVALELRSV-PLPQFPDQA------FRLSHLQHMTIDAAGL----MELPDTMQQFAGLETLTLARNPLRA---LPA-  144 (328)
T ss_dssp             STTCCEEEEESS-CCSSCCSCG------GGGTTCSEEEEESSCC----CCCCSCGGGGTTCSEEEEESCCCCC---CCG-
T ss_pred             ccceeEEEccCC-CchhcChhh------hhCCCCCEEECCCCCc----cchhHHHhccCCCCEEECCCCcccc---CcH-
Confidence            466777777766 455555544      3567777777777665    34443  446777777777764322   444 


Q ss_pred             HhhcCCCccEEEE-EeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCC
Q 036801          171 FLQRFHTLKVLQI-EGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQ  249 (388)
Q Consensus       171 ~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~  249 (388)
                      .+..+++|+.|++ +|+..    ..+|..+...-            .. ..+..+++|+.|++++| .++.+|..+..++
T Consensus       145 ~l~~l~~L~~L~L~~n~~~----~~~p~~~~~~~------------~~-~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~  206 (328)
T 4fcg_A          145 SIASLNRLRELSIRACPEL----TELPEPLASTD------------AS-GEHQGLVNLQSLRLEWT-GIRSLPASIANLQ  206 (328)
T ss_dssp             GGGGCTTCCEEEEEEETTC----CCCCSCSEEEC-------------C-CCEEESTTCCEEEEEEE-CCCCCCGGGGGCT
T ss_pred             HHhcCcCCCEEECCCCCCc----cccChhHhhcc------------ch-hhhccCCCCCEEECcCC-CcCcchHhhcCCC
Confidence            5778889999999 55544    44443221000            00 33445789999999987 5667887888899


Q ss_pred             CcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceecc
Q 036801          250 NLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYS  329 (388)
Q Consensus       250 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  329 (388)
                      +|++|+++++ .+..++..  +..+++|++|++++|.....+...            ...+++|+.|++.+|.....++.
T Consensus       207 ~L~~L~L~~N-~l~~l~~~--l~~l~~L~~L~Ls~n~~~~~~p~~------------~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          207 NLKSLKIRNS-PLSALGPA--IHHLPKLEELDLRGCTALRNYPPI------------FGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             TCCEEEEESS-CCCCCCGG--GGGCTTCCEEECTTCTTCCBCCCC------------TTCCCCCCEEECTTCTTCCBCCT
T ss_pred             CCCEEEccCC-CCCcCchh--hccCCCCCEEECcCCcchhhhHHH------------hcCCCCCCEEECCCCCchhhcch
Confidence            9999999975 56666553  457899999999888766554322            22478999999999988888887


Q ss_pred             CcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801          330 GYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN  369 (388)
Q Consensus       330 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~  369 (388)
                      ..  ..+++|++|++++|+.++.+|..+..+++|+.+.+.
T Consensus       272 ~~--~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          272 DI--HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             TG--GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             hh--hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            65  789999999999999999999999999999999887

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.79  E-value=1.2e-17  Score=154.13  Aligned_cols=285  Identities=14%  Similarity=0.115  Sum_probs=195.1

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      +++.++++++ .++.+ |..+     .++|++|++++| .+..++...        +..+++|++|++.++ .+..+.+.
T Consensus        32 ~l~~l~~~~~-~l~~l-p~~~-----~~~l~~L~L~~n-~i~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~   94 (330)
T 1xku_A           32 HLRVVQCSDL-GLEKV-PKDL-----PPDTALLDLQNN-KITEIKDGD--------FKNLKNLHTLILINN-KISKISPG   94 (330)
T ss_dssp             ETTEEECTTS-CCCSC-CCSC-----CTTCCEEECCSS-CCCCBCTTT--------TTTCTTCCEEECCSS-CCCCBCTT
T ss_pred             CCeEEEecCC-Ccccc-CccC-----CCCCeEEECCCC-cCCEeChhh--------hccCCCCCEEECCCC-cCCeeCHH
Confidence            7888888875 45554 4432     457999999998 576665532        668999999999975 68777665


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeecccccccc
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELT  163 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~  163 (388)
                      .  +..+++|++|+++++ .++.++...        .++|++|++++|.+    ..++.   ..+++|+.|+++++....
T Consensus        95 ~--~~~l~~L~~L~Ls~n-~l~~l~~~~--------~~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A           95 A--FAPLVKLERLYLSKN-QLKELPEKM--------PKTLQELRVHENEI----TKVRKSVFNGLNQMIVVELGTNPLKS  159 (330)
T ss_dssp             T--TTTCTTCCEEECCSS-CCSBCCSSC--------CTTCCEEECCSSCC----CBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             H--hcCCCCCCEEECCCC-cCCccChhh--------cccccEEECCCCcc----cccCHhHhcCCccccEEECCCCcCCc
Confidence            4  678999999999988 566565433        37899999999887    44443   458899999999876533


Q ss_pred             ccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcccccc-C
Q 036801          164 TILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINL-V  242 (388)
Q Consensus       164 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l-~  242 (388)
                       .......+..+++|+.|++..+.+   + .++                      ..+  .++|+.|++++|. ++.+ +
T Consensus       160 -~~~~~~~~~~l~~L~~L~l~~n~l---~-~l~----------------------~~~--~~~L~~L~l~~n~-l~~~~~  209 (330)
T 1xku_A          160 -SGIENGAFQGMKKLSYIRIADTNI---T-TIP----------------------QGL--PPSLTELHLDGNK-ITKVDA  209 (330)
T ss_dssp             -GGBCTTGGGGCTTCCEEECCSSCC---C-SCC----------------------SSC--CTTCSEEECTTSC-CCEECT
T ss_pred             -cCcChhhccCCCCcCEEECCCCcc---c-cCC----------------------ccc--cccCCEEECCCCc-CCccCH
Confidence             223334678899999999966666   2 233                      121  2788889988875 4433 4


Q ss_pred             CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccc
Q 036801          243 PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLE  322 (388)
Q Consensus       243 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  322 (388)
                      ..+..+++|+.|+++++ .+..++.. ....+++|++|+++++ .++.+...            ...+++|+.|++.++ 
T Consensus       210 ~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~lp~~------------l~~l~~L~~L~l~~N-  273 (330)
T 1xku_A          210 ASLKGLNNLAKLGLSFN-SISAVDNG-SLANTPHLRELHLNNN-KLVKVPGG------------LADHKYIQVVYLHNN-  273 (330)
T ss_dssp             GGGTTCTTCCEEECCSS-CCCEECTT-TGGGSTTCCEEECCSS-CCSSCCTT------------TTTCSSCCEEECCSS-
T ss_pred             HHhcCCCCCCEEECCCC-cCceeChh-hccCCCCCCEEECCCC-cCccCChh------------hccCCCcCEEECCCC-
Confidence            55678888999998865 56666543 2356788999999766 35444322            123688888888886 


Q ss_pred             ccceeccCccc-----ccCCCcceEeccCCccc-ccC-CCCCcCCCCcceEEEe
Q 036801          323 SLRSFYSGYCA-----LNFPSLERLLVDDCTNM-EIF-SRGELSTPMLHKVQLN  369 (388)
Q Consensus       323 ~l~~l~~~~~~-----~~~~~L~~L~l~~c~~l-~~l-~~~~~~~~~L~~l~l~  369 (388)
                      .+..++...+.     ...+.++.|++.+.+-. ..+ |.....++.++.++++
T Consensus       274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~  327 (330)
T 1xku_A          274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG  327 (330)
T ss_dssp             CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred             cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence            46666544311     12477888999886632 123 3444456888888876

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.78  E-value=1e-17  Score=162.09  Aligned_cols=196  Identities=15%  Similarity=0.154  Sum_probs=124.8

Q ss_pred             cccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccc
Q 036801          121 KVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVE  200 (388)
Q Consensus       121 ~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~  200 (388)
                      ..+++|++|++++|.+.   ...+.+.+++|+.|+++++....   .+  .+..+++|+.|++..+.+   ....+....
T Consensus       196 ~~l~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~l~~n~l---~~~~~~~~l  264 (466)
T 1o6v_A          196 AKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKD---IG--TLASLTNLTDLDLANNQI---SNLAPLSGL  264 (466)
T ss_dssp             GGCTTCSEEECCSSCCC---CCGGGGGCTTCCEEECCSSCCCC---CG--GGGGCTTCSEEECCSSCC---CCCGGGTTC
T ss_pred             ccCCCCCEEEecCCccc---ccccccccCCCCEEECCCCCccc---ch--hhhcCCCCCEEECCCCcc---ccchhhhcC
Confidence            35566666666665542   12234556777777777664322   21  456677888888855555   333332222


Q ss_pred             cccceeeeee-ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCE
Q 036801          201 VIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLRE  279 (388)
Q Consensus       201 ~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~  279 (388)
                      ++|+...+.- .+..++   .+..+++|+.|++++|. ++.+++ +..+++|+.|++++| .+.+.+.   ...+++|++
T Consensus       265 ~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~  335 (466)
T 1o6v_A          265 TKLTELKLGANQISNIS---PLAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQR  335 (466)
T ss_dssp             TTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCE
T ss_pred             CCCCEEECCCCccCccc---cccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC-cCCCchh---hccCccCCE
Confidence            3333222222 444443   36678999999999984 555544 678999999999987 5655544   357899999


Q ss_pred             EeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCC
Q 036801          280 MKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSR  355 (388)
Q Consensus       280 L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~  355 (388)
                      |++.+| .++.+..             ...+++|+.|++.+|. +..+.. .  ..+++|+.|++++|+ +..+|.
T Consensus       336 L~l~~n-~l~~~~~-------------l~~l~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~l~~n~-~~~~p~  392 (466)
T 1o6v_A          336 LFFYNN-KVSDVSS-------------LANLTNINWLSAGHNQ-ISDLTP-L--ANLTRITQLGLNDQA-WTNAPV  392 (466)
T ss_dssp             EECCSS-CCCCCGG-------------GTTCTTCCEEECCSSC-CCBCGG-G--TTCTTCCEEECCCEE-EECCCB
T ss_pred             eECCCC-ccCCchh-------------hccCCCCCEEeCCCCc-cCccch-h--hcCCCCCEEeccCCc-ccCCch
Confidence            999877 4544421             2347899999999985 454443 3  578999999999864 444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=4.6e-18  Score=157.21  Aligned_cols=292  Identities=14%  Similarity=0.074  Sum_probs=192.5

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      +++.++++++ .++.+ |..+     .++|++|++++| .+..++...        +..+++|++|++.++ .+..+.+.
T Consensus        34 ~l~~l~~~~~-~l~~i-p~~~-----~~~l~~L~l~~n-~i~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~   96 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAV-PKEI-----SPDTTLLDLQNN-DISELRKDD--------FKGLQHLYALVLVNN-KISKIHEK   96 (332)
T ss_dssp             ETTEEECCSS-CCSSC-CSCC-----CTTCCEEECCSS-CCCEECTTT--------TTTCTTCCEEECCSS-CCCEECGG
T ss_pred             cCCEEECCCC-Ccccc-CCCC-----CCCCeEEECCCC-cCCccCHhH--------hhCCCCCcEEECCCC-ccCccCHh
Confidence            6888888875 45554 4432     356888999888 466654432        567888999999875 57776555


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeecccccccc
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELT  163 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~  163 (388)
                      .  +..+++|++|+++++ .+..++...        .++|++|++++|.+    ..++.   ..+++|++|+++++....
T Consensus        97 ~--~~~l~~L~~L~L~~n-~l~~l~~~~--------~~~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~l~~n~l~~  161 (332)
T 2ft3_A           97 A--FSPLRKLQKLYISKN-HLVEIPPNL--------PSSLVELRIHDNRI----RKVPKGVFSGLRNMNCIEMGGNPLEN  161 (332)
T ss_dssp             G--STTCTTCCEEECCSS-CCCSCCSSC--------CTTCCEEECCSSCC----CCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred             H--hhCcCCCCEEECCCC-cCCccCccc--------cccCCEEECCCCcc----CccCHhHhCCCccCCEEECCCCcccc
Confidence            4  667889999999887 555555432        27889999988877    44443   347788999988875432


Q ss_pred             ccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCccccccC
Q 036801          164 TILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLV  242 (388)
Q Consensus       164 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~  242 (388)
                       .......+..+ +|+.|++..+.+    ..+|.....+|+...+.- .+..+.+ ..+..+++|+.|++++| .++.++
T Consensus       162 -~~~~~~~~~~l-~L~~L~l~~n~l----~~l~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~N-~l~~~~  233 (332)
T 2ft3_A          162 -SGFEPGAFDGL-KLNYLRISEAKL----TGIPKDLPETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHN-QIRMIE  233 (332)
T ss_dssp             -GGSCTTSSCSC-CCSCCBCCSSBC----SSCCSSSCSSCSCCBCCSSCCCCCCT-TSSTTCTTCSCCBCCSS-CCCCCC
T ss_pred             -CCCCcccccCC-ccCEEECcCCCC----CccCccccCCCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCC-cCCcCC
Confidence             12223345555 888888866666    335655555555444444 5666665 67888999999999998 455554


Q ss_pred             C-CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccc
Q 036801          243 P-SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNL  321 (388)
Q Consensus       243 ~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  321 (388)
                      + .+..+++|+.|+++++ .+..++..  ...+++|+.|+++++ .++.+.........     ....+++|+.|++.++
T Consensus       234 ~~~~~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~-----~~~~~~~l~~L~l~~N  304 (332)
T 2ft3_A          234 NGSLSFLPTLRELHLDNN-KLSRVPAG--LPDLKLLQVVYLHTN-NITKVGVNDFCPVG-----FGVKRAYYNGISLFNN  304 (332)
T ss_dssp             TTGGGGCTTCCEEECCSS-CCCBCCTT--GGGCTTCCEEECCSS-CCCBCCTTSSSCSS-----CCSSSCCBSEEECCSS
T ss_pred             hhHhhCCCCCCEEECCCC-cCeecChh--hhcCccCCEEECCCC-CCCccChhHccccc-----cccccccccceEeecC
Confidence            4 5788999999999975 67777663  457899999999765 46555322111000     0112578999999997


Q ss_pred             cccc-eeccCcccccCCCcceEeccCCc
Q 036801          322 ESLR-SFYSGYCALNFPSLERLLVDDCT  348 (388)
Q Consensus       322 ~~l~-~l~~~~~~~~~~~L~~L~l~~c~  348 (388)
                      +... .+... .+..+++|+.++++++.
T Consensus       305 ~~~~~~~~~~-~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          305 PVPYWEVQPA-TFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCGGGSCGG-GGTTBCCSTTEEC----
T ss_pred             cccccccCcc-cccccchhhhhhccccc
Confidence            6321 23322 23568999999998764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.77  E-value=5.7e-17  Score=159.04  Aligned_cols=126  Identities=20%  Similarity=0.139  Sum_probs=97.5

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      ++|++|++++|. ++.++|..+.   ++++|++|++++| .+..+....        +..+++|++|+++++ ++..++.
T Consensus        21 ~~L~~L~Ls~n~-i~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~~~~--------~~~l~~L~~L~Ls~N-~l~~lp~   86 (520)
T 2z7x_B           21 QKTTILNISQNY-ISELWTSDIL---SLSKLRILIISHN-RIQYLDISV--------FKFNQELEYLDLSHN-KLVKISC   86 (520)
T ss_dssp             TTCSEEECCSSC-CCCCCHHHHT---TCTTCCEEECCSS-CCCEEEGGG--------GTTCTTCCEEECCSS-CCCEEEC
T ss_pred             ccccEEECCCCc-ccccChhhcc---ccccccEEecCCC-ccCCcChHH--------hhcccCCCEEecCCC-ceeecCc
Confidence            689999999864 6666667788   8999999999999 566664331        678999999999974 6777665


Q ss_pred             CCcccccCCCccEEEeecCCCceEe--cccccCCccccccCCccEEEEeecCccccccccchhhccCc--cEeecccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVK--FKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKL--KCLDVEFVDE  161 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L--~~L~l~~~~~  161 (388)
                      .     .+++|++|++++| .++.+  |...      ..+++|++|++++|.+    .......+++|  +.|+++++..
T Consensus        87 ~-----~l~~L~~L~L~~N-~l~~~~~p~~~------~~l~~L~~L~L~~n~l----~~~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           87 H-----PTVNLKHLDLSFN-AFDALPICKEF------GNMSQLKFLGLSTTHL----EKSSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             C-----CCCCCSEEECCSS-CCSSCCCCGGG------GGCTTCCEEEEEESSC----CGGGGGGGTTSCEEEEEEEECTT
T ss_pred             c-----ccCCccEEeccCC-ccccccchhhh------ccCCcceEEEecCccc----chhhccccccceeeEEEeecccc
Confidence            4     5899999999998 45442  3333      5899999999999887    33445567788  9999998764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.76  E-value=9.7e-17  Score=158.94  Aligned_cols=127  Identities=17%  Similarity=0.152  Sum_probs=80.1

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      ++|++|++++| .++.++|..++   ++++|++|++++| .+..++...        +..+++|++|+++++ .+..++.
T Consensus        52 ~~L~~L~Ls~N-~i~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~--------~~~l~~L~~L~Ls~N-~l~~lp~  117 (562)
T 3a79_B           52 PRTKALSLSQN-SISELRMPDIS---FLSELRVLRLSHN-RIRSLDFHV--------FLFNQDLEYLDVSHN-RLQNISC  117 (562)
T ss_dssp             TTCCEEECCSS-CCCCCCGGGTT---TCTTCCEEECCSC-CCCEECTTT--------TTTCTTCCEEECTTS-CCCEECS
T ss_pred             CCcCEEECCCC-CccccChhhhc---cCCCccEEECCCC-CCCcCCHHH--------hCCCCCCCEEECCCC-cCCccCc
Confidence            56777777774 35555555666   6777777777777 455553321        456777777777764 5666554


Q ss_pred             CCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCccccccccchhhccCc--cEeecccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKL--KCLDVEFVDE  161 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L--~~L~l~~~~~  161 (388)
                      .     .+++|++|++++| .+..++. ..+     ..+++|++|++++|.+    .......+++|  +.|+++++..
T Consensus       118 ~-----~l~~L~~L~Ls~N-~l~~l~~p~~~-----~~l~~L~~L~L~~n~l----~~~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          118 C-----PMASLRHLDLSFN-DFDVLPVCKEF-----GNLTKLTFLGLSAAKF----RQLDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             C-----CCTTCSEEECCSS-CCSBCCCCGGG-----GGCTTCCEEEEECSBC----CTTTTGGGTTSCEEEEEEEESSC
T ss_pred             c-----ccccCCEEECCCC-CccccCchHhh-----cccCcccEEecCCCcc----ccCchhhhhhceeeEEEeecccc
Confidence            4     4777788877777 4544432 222     4677788888877765    22334445555  7777777643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.76  E-value=1.1e-17  Score=155.92  Aligned_cols=277  Identities=14%  Similarity=0.123  Sum_probs=177.4

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .++.....+.+++ .++.+|..           ..++|++|++.++ .+..++...  +..+++|++|++++| .++.++
T Consensus        29 ~C~~~~~c~~~~~-~l~~iP~~-----------~~~~L~~L~l~~n-~i~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~   92 (353)
T 2z80_A           29 SCDRNGICKGSSG-SLNSIPSG-----------LTEAVKSLDLSNN-RITYISNSD--LQRCVNLQALVLTSN-GINTIE   92 (353)
T ss_dssp             EECTTSEEECCST-TCSSCCTT-----------CCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECTTS-CCCEEC
T ss_pred             CCCCCeEeeCCCC-Cccccccc-----------ccccCcEEECCCC-cCcccCHHH--hccCCCCCEEECCCC-ccCccC
Confidence            3555555566554 45555543           2357888888764 577776654  567888888888877 666665


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccch-hHhhcCCCccEEEE-Eec
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSLD-DFLQRFHTLKVLQI-EGY  186 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l-~~~  186 (388)
                      ...+     ..+++|++|++++|.+    ..++.   ..+++|++|+++++....   ++. ..+..+++|+.|++ +++
T Consensus        93 ~~~~-----~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A           93 EDSF-----SSLGSLEHLDLSYNYL----SNLSSSWFKPLSSLTFLNLLGNPYKT---LGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             TTTT-----TTCTTCCEEECCSSCC----SSCCHHHHTTCTTCSEEECTTCCCSS---SCSSCSCTTCTTCCEEEEEESS
T ss_pred             Hhhc-----CCCCCCCEEECCCCcC----CcCCHhHhCCCccCCEEECCCCCCcc---cCchhhhccCCCCcEEECCCCc
Confidence            5544     5778888888888776    44554   346788888888765332   333 35677889999999 443


Q ss_pred             cCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeec
Q 036801          187 NYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVL  266 (388)
Q Consensus       187 ~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~  266 (388)
                      .+   +...+                      ..+..+++|++|++++|......+..+..+++|++|+++++ .+..++
T Consensus       161 ~~---~~~~~----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~  214 (353)
T 2z80_A          161 TF---TKIQR----------------------KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLL  214 (353)
T ss_dssp             SC---CEECT----------------------TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-CSTTHH
T ss_pred             cc---cccCH----------------------HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC-ccccch
Confidence            45   22211                      45667788999999888544444666778888999999865 455554


Q ss_pred             chhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccc----ccceeccCcccccCCCcceE
Q 036801          267 TFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLE----SLRSFYSGYCALNFPSLERL  342 (388)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~----~l~~l~~~~~~~~~~~L~~L  342 (388)
                      .. +...+++|++|+++++. ++.+.......        ....+.++.+++.++.    .+..++...  ..+++|++|
T Consensus       215 ~~-~~~~~~~L~~L~L~~n~-l~~~~~~~l~~--------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~~l~~L~~L  282 (353)
T 2z80_A          215 EI-FVDVTSSVECLELRDTD-LDTFHFSELST--------GETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGLLEL  282 (353)
T ss_dssp             HH-HHHHTTTEEEEEEESCB-CTTCCCC--------------CCCCCCEEEEESCBCCHHHHHHHHHHH--HTCTTCCEE
T ss_pred             hh-hhhhcccccEEECCCCc-ccccccccccc--------ccccchhhccccccccccCcchhhhHHHH--hcccCCCEE
Confidence            43 33457889999997653 43332111000        1123445555555542    123344433  578999999


Q ss_pred             eccCCcccccCCCCC-cCCCCcceEEEeccCCccccc
Q 036801          343 LVDDCTNMEIFSRGE-LSTPMLHKVQLNMWDEACWAW  378 (388)
Q Consensus       343 ~l~~c~~l~~l~~~~-~~~~~L~~l~l~~~~~~~~~~  378 (388)
                      ++++| .++.+|.+. ..+++|+.++++   ++.|.+
T Consensus       283 ~Ls~N-~l~~i~~~~~~~l~~L~~L~L~---~N~~~~  315 (353)
T 2z80_A          283 EFSRN-QLKSVPDGIFDRLTSLQKIWLH---TNPWDC  315 (353)
T ss_dssp             ECCSS-CCCCCCTTTTTTCTTCCEEECC---SSCBCC
T ss_pred             ECCCC-CCCccCHHHHhcCCCCCEEEee---CCCccC
Confidence            99985 677888875 678999999998   554443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.76  E-value=1.2e-17  Score=153.12  Aligned_cols=252  Identities=12%  Similarity=0.052  Sum_probs=129.7

Q ss_pred             cccceeecccccccc---EeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCce-E
Q 036801           34 VRLQYIEIEKCHVLE---ELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFM-V  109 (388)
Q Consensus        34 ~~L~~L~L~~~~~~~---~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~  109 (388)
                      .++++|+++++. +.   .++..         +..+++|++|++.+++++....+..  +..+++|++|++++| .+. .
T Consensus        50 ~~l~~L~L~~~~-l~~~~~~~~~---------l~~l~~L~~L~L~~~n~l~~~~p~~--l~~l~~L~~L~Ls~n-~l~~~  116 (313)
T 1ogq_A           50 YRVNNLDLSGLN-LPKPYPIPSS---------LANLPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHT-NVSGA  116 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCGG---------GGGCTTCSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEE-CCEEE
T ss_pred             ceEEEEECCCCC-ccCCcccChh---------HhCCCCCCeeeCCCCCcccccCChh--HhcCCCCCEEECcCC-eeCCc
Confidence            356666666652 32   23332         4556666666665433444333332  455666666666665 333 3


Q ss_pred             ecccccCCccccccCCccEEEEeecCccccccccc--hhhccCccEeeccccccccccccchhHhhcCC-CccEEEEEec
Q 036801          110 KFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS--KDLLCKLKCLDVEFVDELTTILSLDDFLQRFH-TLKVLQIEGY  186 (388)
Q Consensus       110 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~  186 (388)
                      ++...      ..+++|++|++++|.+.   ..+|  ...+++|++|+++++....  ..|. .+..++ +|+.|++..+
T Consensus       117 ~p~~~------~~l~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~-~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          117 IPDFL------SQIKTLVTLDFSYNALS---GTLPPSISSLPNLVGITFDGNRISG--AIPD-SYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             CCGGG------GGCTTCCEEECCSSEEE---SCCCGGGGGCTTCCEEECCSSCCEE--ECCG-GGGCCCTTCCEEECCSS
T ss_pred             CCHHH------hCCCCCCEEeCCCCccC---CcCChHHhcCCCCCeEECcCCcccC--cCCH-HHhhhhhcCcEEECcCC
Confidence            33322      45666666666665542   1222  2345666666666654321  2333 344555 6777777544


Q ss_pred             cCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeec
Q 036801          187 NYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVL  266 (388)
Q Consensus       187 ~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~  266 (388)
                      .+   +..++                      ..+..++ |+.|++++|......+..+..+++|+.|+++++ .+....
T Consensus       185 ~l---~~~~~----------------------~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~  237 (313)
T 1ogq_A          185 RL---TGKIP----------------------PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDL  237 (313)
T ss_dssp             EE---EEECC----------------------GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBG
T ss_pred             ee---eccCC----------------------hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC-ceeeec
Confidence            54   33333                      2233333 666666666433344445566666777766654 233222


Q ss_pred             chhhhhccCccCEEeeccccccc-cccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEecc
Q 036801          267 TFLIAKTLVRLREMKIESCAMIT-EIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVD  345 (388)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~c~~l~-~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~  345 (388)
                      ..  ...+++|++|+++++. ++ .+...            ...+++|+.|+++++.--..++..   ..+++|+.+++.
T Consensus       238 ~~--~~~l~~L~~L~Ls~N~-l~~~~p~~------------l~~l~~L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~l~  299 (313)
T 1ogq_A          238 GK--VGLSKNLNGLDLRNNR-IYGTLPQG------------LTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYA  299 (313)
T ss_dssp             GG--CCCCTTCCEEECCSSC-CEECCCGG------------GGGCTTCCEEECCSSEEEEECCCS---TTGGGSCGGGTC
T ss_pred             Cc--ccccCCCCEEECcCCc-ccCcCChH------------HhcCcCCCEEECcCCcccccCCCC---ccccccChHHhc
Confidence            21  2345667777775543 22 11110            223566777777766433344442   356777777777


Q ss_pred             CCcccccCCC
Q 036801          346 DCTNMEIFSR  355 (388)
Q Consensus       346 ~c~~l~~l~~  355 (388)
                      +++.+...|.
T Consensus       300 ~N~~lc~~p~  309 (313)
T 1ogq_A          300 NNKCLCGSPL  309 (313)
T ss_dssp             SSSEEESTTS
T ss_pred             CCCCccCCCC
Confidence            7666655443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=2.2e-17  Score=159.24  Aligned_cols=225  Identities=17%  Similarity=0.177  Sum_probs=126.1

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      ++++|+++++ .++.+.|..|+   ++++|++|++++| .+..++...        +..+++|++|++.++ .+..++..
T Consensus        76 ~l~~L~L~~n-~i~~~~~~~~~---~l~~L~~L~Ls~n-~i~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~  141 (452)
T 3zyi_A           76 NTRYLNLMEN-NIQMIQADTFR---HLHHLEVLQLGRN-SIRQIEVGA--------FNGLASLNTLELFDN-WLTVIPSG  141 (452)
T ss_dssp             TCSEEECCSS-CCCEECTTTTT---TCTTCCEEECCSS-CCCEECTTT--------TTTCTTCCEEECCSS-CCSBCCTT
T ss_pred             CccEEECcCC-cCceECHHHcC---CCCCCCEEECCCC-ccCCcChhh--------ccCcccCCEEECCCC-cCCccChh
Confidence            5666666664 35555555555   5666666666666 444443321        445666666666653 45555554


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccc
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTIL  166 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~  166 (388)
                      .  +..+++|++|++++| .++.++...+     ..+++|++|++++++....+..-....+++|+.|+++++....   
T Consensus       142 ~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---  210 (452)
T 3zyi_A          142 A--FEYLSKLRELWLRNN-PIESIPSYAF-----NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---  210 (452)
T ss_dssp             T--SSSCTTCCEEECCSC-CCCEECTTTT-----TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---
T ss_pred             h--hcccCCCCEEECCCC-CcceeCHhHH-----hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---
Confidence            3  445666666666666 4555555444     4666666666666443322111112335566666666654322   


Q ss_pred             cchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCC
Q 036801          167 SLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSST  246 (388)
Q Consensus       167 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~  246 (388)
                      ++  .+..+++|+.|++..|.+   +.                     +.+ ..+..+++|+.|++.+|......+..+.
T Consensus       211 ~~--~~~~l~~L~~L~Ls~N~l---~~---------------------~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~  263 (452)
T 3zyi_A          211 MP--NLTPLVGLEELEMSGNHF---PE---------------------IRP-GSFHGLSSLKKLWVMNSQVSLIERNAFD  263 (452)
T ss_dssp             CC--CCTTCTTCCEEECTTSCC---SE---------------------ECG-GGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cc--cccccccccEEECcCCcC---cc---------------------cCc-ccccCccCCCEEEeCCCcCceECHHHhc
Confidence            22  244566666666644455   22                     222 4555667777777777643333344556


Q ss_pred             CCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801          247 SFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC  285 (388)
Q Consensus       247 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  285 (388)
                      .+++|+.|+++++ .+..++.. ....+++|+.|++.++
T Consensus       264 ~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          264 GLASLVELNLAHN-NLSSLPHD-LFTPLRYLVELHLHHN  300 (452)
T ss_dssp             TCTTCCEEECCSS-CCSCCCTT-SSTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC-cCCccChH-HhccccCCCEEEccCC
Confidence            6777777777754 55555543 2345677777777653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=3.5e-17  Score=157.25  Aligned_cols=225  Identities=16%  Similarity=0.175  Sum_probs=126.4

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      ++++.|+++++ .++.+.+..+.   ++++|++|+|++| .+..++...        +..+++|++|++.++ ++..++.
T Consensus        64 ~~l~~L~L~~n-~i~~~~~~~~~---~l~~L~~L~Ls~n-~i~~i~~~~--------~~~l~~L~~L~L~~n-~l~~~~~  129 (440)
T 3zyj_A           64 TNTRLLNLHEN-QIQIIKVNSFK---HLRHLEILQLSRN-HIRTIEIGA--------FNGLANLNTLELFDN-RLTTIPN  129 (440)
T ss_dssp             TTCSEEECCSC-CCCEECTTTTS---SCSSCCEEECCSS-CCCEECGGG--------GTTCSSCCEEECCSS-CCSSCCT
T ss_pred             CCCcEEEccCC-cCCeeCHHHhh---CCCCCCEEECCCC-cCCccChhh--------ccCCccCCEEECCCC-cCCeeCH
Confidence            35666666663 35555555555   5666677776666 344443321        445666666666653 5665555


Q ss_pred             CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTI  165 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~  165 (388)
                      ..  +..+++|++|+++++ .+..++...+     ..+++|++|++++++....+..-....+++|++|+++++....  
T Consensus       130 ~~--~~~l~~L~~L~L~~N-~i~~~~~~~~-----~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--  199 (440)
T 3zyj_A          130 GA--FVYLSKLKELWLRNN-PIESIPSYAF-----NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--  199 (440)
T ss_dssp             TT--SCSCSSCCEEECCSC-CCCEECTTTT-----TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--
T ss_pred             hH--hhccccCceeeCCCC-cccccCHHHh-----hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--
Confidence            43  455666666666666 4555555444     4666666666666443322111122335666666666654322  


Q ss_pred             ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801          166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS  245 (388)
Q Consensus       166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~  245 (388)
                       ++  .+..+++|+.|++..|.+   +.                     +.+ ..+..+++|+.|++.++......+..+
T Consensus       200 -~~--~~~~l~~L~~L~Ls~N~l---~~---------------------~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~  251 (440)
T 3zyj_A          200 -IP--NLTPLIKLDELDLSGNHL---SA---------------------IRP-GSFQGLMHLQKLWMIQSQIQVIERNAF  251 (440)
T ss_dssp             -CC--CCTTCSSCCEEECTTSCC---CE---------------------ECT-TTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred             -cc--ccCCCcccCEEECCCCcc---Cc---------------------cCh-hhhccCccCCEEECCCCceeEEChhhh
Confidence             22  245566666666644455   22                     222 555666777777777763322223345


Q ss_pred             CCCCCcCEEEEecCCCceeecchhhhhccCccCEEeecc
Q 036801          246 TSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIES  284 (388)
Q Consensus       246 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~  284 (388)
                      ..+++|+.|+++++ .+..++.. ....+++|+.|++.+
T Consensus       252 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          252 DNLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHH  288 (440)
T ss_dssp             TTCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCS
T ss_pred             cCCCCCCEEECCCC-CCCccChh-HhccccCCCEEEcCC
Confidence            66777777777754 55555543 234567777777765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.74  E-value=2.8e-17  Score=158.43  Aligned_cols=284  Identities=16%  Similarity=0.132  Sum_probs=180.9

Q ss_pred             CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801            2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT   81 (388)
Q Consensus         2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~   81 (388)
                      ++.+++|++|++++|. ++.+ |  ++   .+++|++|++++| .+..++           +..+++|++|++.++ .+.
T Consensus        60 l~~l~~L~~L~Ls~n~-l~~~-~--~~---~l~~L~~L~Ls~N-~l~~~~-----------~~~l~~L~~L~L~~N-~l~  119 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNN-ITTL-D--LS---QNTNLTYLACDSN-KLTNLD-----------VTPLTKLTYLNCDTN-KLT  119 (457)
T ss_dssp             GGGCTTCSEEECCSSC-CSCC-C--CT---TCTTCSEEECCSS-CCSCCC-----------CTTCTTCCEEECCSS-CCS
T ss_pred             hcccCCCCEEEccCCc-CCeE-c--cc---cCCCCCEEECcCC-CCceee-----------cCCCCcCCEEECCCC-cCC
Confidence            3568899999999864 6654 3  66   7999999999998 455531           457888999999875 566


Q ss_pred             cccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccc
Q 036801           82 SFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDE  161 (388)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~  161 (388)
                      .++     +..+++|++|++++| .++.++  .      ..+++|++|++++|...   ..++.+.+++|+.|+++++..
T Consensus       120 ~l~-----~~~l~~L~~L~l~~N-~l~~l~--l------~~l~~L~~L~l~~n~~~---~~~~~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          120 KLD-----VSQNPLLTYLNCARN-TLTEID--V------SHNTQLTELDCHLNKKI---TKLDVTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             CCC-----CTTCTTCCEEECTTS-CCSCCC--C------TTCTTCCEEECTTCSCC---CCCCCTTCTTCCEEECCSSCC
T ss_pred             eec-----CCCCCcCCEEECCCC-ccceec--c------ccCCcCCEEECCCCCcc---cccccccCCcCCEEECCCCcc
Confidence            654     345888999998887 555442  1      46788888888887543   344566678888888887653


Q ss_pred             ccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCccccc
Q 036801          162 LTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLIN  240 (388)
Q Consensus       162 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~  240 (388)
                      ..   ++   +..+++|+.|++..+.+   +. ++-+..++|+..++.- .+.+++    +..+++|+.|++++| .++.
T Consensus       183 ~~---l~---l~~l~~L~~L~l~~N~l---~~-~~l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N-~l~~  247 (457)
T 3bz5_A          183 TE---LD---VSQNKLLNRLNCDTNNI---TK-LDLNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVN-PLTE  247 (457)
T ss_dssp             CC---CC---CTTCTTCCEEECCSSCC---SC-CCCTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSS-CCSC
T ss_pred             ce---ec---cccCCCCCEEECcCCcC---Ce-eccccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCC-cCCC
Confidence            22   32   56678888888866666   33 2322233344333332 455542    567789999999988 4444


Q ss_pred             cCCCCCCCCCc----------CEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecc
Q 036801          241 LVPSSTSFQNL----------TTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAF  310 (388)
Q Consensus       241 l~~~~~~~~~L----------~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~  310 (388)
                      ++  ...+++|          +.+++++|..+..++.    ..+++|+.|++++|..++.+.......  ...  .....
T Consensus       248 ~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~~~L--~~L--~l~~~  317 (457)
T 3bz5_A          248 LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQAAGI--TEL--DLSQN  317 (457)
T ss_dssp             CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEECTTCCC--SCC--CCTTC
T ss_pred             cC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccc----cccccCCEEECCCCcccceeccCCCcc--eEe--chhhc
Confidence            43  2344444          4555555554555543    367899999999988776665311000  000  01224


Q ss_pred             cccceeecccccccceeccCcccccCCCcceEeccCCcccccC
Q 036801          311 SKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIF  353 (388)
Q Consensus       311 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l  353 (388)
                      ++|+.|+++++ .+..++  .  ..+++|+.|+++++ +++.+
T Consensus       318 ~~L~~L~L~~N-~l~~l~--l--~~l~~L~~L~l~~N-~l~~l  354 (457)
T 3bz5_A          318 PKLVYLYLNNT-ELTELD--V--SHNTKLKSLSCVNA-HIQDF  354 (457)
T ss_dssp             TTCCEEECTTC-CCSCCC--C--TTCTTCSEEECCSS-CCCBC
T ss_pred             ccCCEEECCCC-cccccc--c--ccCCcCcEEECCCC-CCCCc
Confidence            56677776664 455553  2  56899999999874 44443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.74  E-value=8.7e-18  Score=154.32  Aligned_cols=245  Identities=13%  Similarity=0.025  Sum_probs=130.8

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+++|++|++++| .+..++...        +..+++|++|+++++ .+...++    +..+++|++|++++| .++.+ 
T Consensus        32 ~~~~L~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~----~~~l~~L~~L~Ls~n-~l~~l-   95 (317)
T 3o53_A           32 SAWNVKELDLSGN-PLSQISAAD--------LAPFTKLELLNLSSN-VLYETLD----LESLSTLRTLDLNNN-YVQEL-   95 (317)
T ss_dssp             TGGGCSEEECTTS-CCCCCCHHH--------HTTCTTCCEEECTTS-CCEEEEE----ETTCTTCCEEECCSS-EEEEE-
T ss_pred             cCCCCCEEECcCC-ccCcCCHHH--------hhCCCcCCEEECCCC-cCCcchh----hhhcCCCCEEECcCC-ccccc-
Confidence            4556666666666 344433211        445666666666653 3443321    234666666666666 34433 


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCC
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLP  191 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  191 (388)
                               ...++|++|++++|.+    ..++...+++|++|+++++....   .+...+..+++|+.|++..+.+   
T Consensus        96 ---------~~~~~L~~L~l~~n~l----~~~~~~~~~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l---  156 (317)
T 3o53_A           96 ---------LVGPSIETLHAANNNI----SRVSCSRGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEI---  156 (317)
T ss_dssp             ---------EECTTCCEEECCSSCC----SEEEECCCSSCEEEECCSSCCCS---GGGBCTGGGSSEEEEECTTSCC---
T ss_pred             ---------cCCCCcCEEECCCCcc----CCcCccccCCCCEEECCCCCCCC---ccchhhhccCCCCEEECCCCCC---
Confidence                     2335666666666665    34444556667777766654322   2223455566777777744555   


Q ss_pred             ceeecCccccccceeeeeeccceeccccCC-CCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhh
Q 036801          192 KEKVENGVEVIIREAYNCYDMKYILKHESS-SIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLI  270 (388)
Q Consensus       192 ~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l-~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  270 (388)
                      +...+                      ..+ ..+++|+.|++++|. ++.++. ...+++|+.|+++++ .+..++..  
T Consensus       157 ~~~~~----------------------~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~--  209 (317)
T 3o53_A          157 DTVNF----------------------AELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMGPE--  209 (317)
T ss_dssp             CEEEG----------------------GGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEECGG--
T ss_pred             CcccH----------------------HHHhhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCC-cCCcchhh--
Confidence            32222                      111 245667777776663 444422 223666777777653 45555443  


Q ss_pred             hhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccccc-ceeccCcccccCCCcceEeccCCcc
Q 036801          271 AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESL-RSFYSGYCALNFPSLERLLVDDCTN  349 (388)
Q Consensus       271 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~~~L~~L~l~~c~~  349 (388)
                      ...+++|++|+++++ .++.+...            ...+++|+.|++.+++-. ..++.  ++..++.|+.+++.+++.
T Consensus       210 ~~~l~~L~~L~L~~N-~l~~l~~~------------~~~l~~L~~L~l~~N~~~~~~~~~--~~~~~~~L~~l~l~~~~~  274 (317)
T 3o53_A          210 FQSAAGVTWISLRNN-KLVLIEKA------------LRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAKQTVKK  274 (317)
T ss_dssp             GGGGTTCSEEECTTS-CCCEECTT------------CCCCTTCCEEECTTCCCBHHHHHH--HHHTCHHHHHHHHHHHHH
T ss_pred             hcccCcccEEECcCC-cccchhhH------------hhcCCCCCEEEccCCCccCcCHHH--HHhccccceEEECCCchh
Confidence            345667777777554 34443221            123467777777765422 12222  224567777777776666


Q ss_pred             cccC
Q 036801          350 MEIF  353 (388)
Q Consensus       350 l~~l  353 (388)
                      ++..
T Consensus       275 l~~~  278 (317)
T 3o53_A          275 LTGQ  278 (317)
T ss_dssp             HHSS
T ss_pred             ccCC
Confidence            5554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=3.3e-17  Score=148.08  Aligned_cols=220  Identities=14%  Similarity=0.035  Sum_probs=160.1

Q ss_pred             cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801            9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV   88 (388)
Q Consensus         9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   88 (388)
                      +.++.++ .+++.+ |.  +   -.++|++|+++++ .+..++...        +..+++|++|++.++ .+..+.+.. 
T Consensus        14 ~~~~c~~-~~l~~i-p~--~---~~~~l~~L~l~~n-~i~~~~~~~--------~~~~~~L~~L~l~~n-~l~~~~~~~-   75 (285)
T 1ozn_A           14 VTTSCPQ-QGLQAV-PV--G---IPAASQRIFLHGN-RISHVPAAS--------FRACRNLTILWLHSN-VLARIDAAA-   75 (285)
T ss_dssp             CEEECCS-SCCSSC-CT--T---CCTTCSEEECTTS-CCCEECTTT--------TTTCTTCCEEECCSS-CCCEECTTT-
T ss_pred             eEEEcCc-CCcccC-Cc--C---CCCCceEEEeeCC-cCCccCHHH--------cccCCCCCEEECCCC-ccceeCHhh-
Confidence            4566665 456655 43  2   3567999999998 577665432        567899999999875 677776554 


Q ss_pred             ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc---hhhccCccEeecccccccccc
Q 036801           89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS---KDLLCKLKCLDVEFVDELTTI  165 (388)
Q Consensus        89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp---~~~l~~L~~L~l~~~~~~~~~  165 (388)
                       +..+++|++|++++|..+..+++..+     ..+++|++|++++|.+    ..++   ...+++|++|+++++....  
T Consensus        76 -~~~l~~L~~L~l~~n~~l~~~~~~~~-----~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~--  143 (285)
T 1ozn_A           76 -FTGLALLEQLDLSDNAQLRSVDPATF-----HGLGRLHTLHLDRCGL----QELGPGLFRGLAALQYLYLQDNALQA--  143 (285)
T ss_dssp             -TTTCTTCCEEECCSCTTCCCCCTTTT-----TTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECCSSCCCC--
T ss_pred             -cCCccCCCEEeCCCCCCccccCHHHh-----cCCcCCCEEECCCCcC----CEECHhHhhCCcCCCEEECCCCcccc--
Confidence             67789999999999866777755554     5789999999999877    3333   3457899999999875433  


Q ss_pred             ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801          166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS  245 (388)
Q Consensus       166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~  245 (388)
                       .+...+..+++|+.|++..+.+   +. ++                    + ..+..+++|+.|++++|......+..+
T Consensus       144 -~~~~~~~~l~~L~~L~l~~n~l---~~-~~--------------------~-~~~~~l~~L~~L~l~~n~l~~~~~~~~  197 (285)
T 1ozn_A          144 -LPDDTFRDLGNLTHLFLHGNRI---SS-VP--------------------E-RAFRGLHSLDRLLLHQNRVAHVHPHAF  197 (285)
T ss_dssp             -CCTTTTTTCTTCCEEECCSSCC---CE-EC--------------------T-TTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             -cCHhHhccCCCccEEECCCCcc---cc-cC--------------------H-HHhcCccccCEEECCCCcccccCHhHc
Confidence             4444677899999999966677   32 22                    1 456678999999999985444446677


Q ss_pred             CCCCCcCEEEEecCCCceeecchhhhhccCccCEEeecccc
Q 036801          246 TSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCA  286 (388)
Q Consensus       246 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~  286 (388)
                      ..+++|+.|+++++ .+..++.. ....+++|++|++++++
T Consensus       198 ~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          198 RDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred             cCcccccEeeCCCC-cCCcCCHH-HcccCcccCEEeccCCC
Confidence            88899999999975 56666654 34578999999997764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.73  E-value=1.8e-17  Score=151.86  Aligned_cols=250  Identities=13%  Similarity=0.093  Sum_probs=180.3

Q ss_pred             cccceEeccccccccc--ccCCCcccccCCCccEEEeecCCCceE-ecccccCCccccccCCccEEEEeecCcccccccc
Q 036801           67 PRLQYLKMYDLEKLTS--FSTGDVHMLEFPSLKELWISRCPGFMV-KFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF  143 (388)
Q Consensus        67 ~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l  143 (388)
                      .+++.|++.++ .+..  ..+..  +..+++|++|+++++..+.. +|...      ..+++|++|++++|.+.   ..+
T Consensus        50 ~~l~~L~L~~~-~l~~~~~~~~~--l~~l~~L~~L~L~~~n~l~~~~p~~l------~~l~~L~~L~Ls~n~l~---~~~  117 (313)
T 1ogq_A           50 YRVNNLDLSGL-NLPKPYPIPSS--LANLPYLNFLYIGGINNLVGPIPPAI------AKLTQLHYLYITHTNVS---GAI  117 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGG--GGGCTTCSEEEEEEETTEESCCCGGG------GGCTTCSEEEEEEECCE---EEC
T ss_pred             ceEEEEECCCC-CccCCcccChh--HhCCCCCCeeeCCCCCcccccCChhH------hcCCCCCEEECcCCeeC---CcC
Confidence            67999999975 5664  22332  67899999999996446653 44443      58999999999999873   234


Q ss_pred             ch--hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCC
Q 036801          144 SK--DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESS  221 (388)
Q Consensus       144 p~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l  221 (388)
                      |.  ..+++|++|+++++....  ..|. .+..+++|++|++..+.+   +..+|                      ..+
T Consensus       118 p~~~~~l~~L~~L~Ls~N~l~~--~~p~-~~~~l~~L~~L~L~~N~l---~~~~p----------------------~~l  169 (313)
T 1ogq_A          118 PDFLSQIKTLVTLDFSYNALSG--TLPP-SISSLPNLVGITFDGNRI---SGAIP----------------------DSY  169 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEES--CCCG-GGGGCTTCCEEECCSSCC---EEECC----------------------GGG
T ss_pred             CHHHhCCCCCCEEeCCCCccCC--cCCh-HHhcCCCCCeEECcCCcc---cCcCC----------------------HHH
Confidence            43  458899999999986442  3443 678899999999977777   44444                      444


Q ss_pred             CCCC-ccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCc
Q 036801          222 SIMD-NLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDH  300 (388)
Q Consensus       222 ~~l~-~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~  300 (388)
                      ..++ +|+.|++++|......|..+..++ |+.|+++++ .+...... .+..+++|+.|+++++. ++.....      
T Consensus       170 ~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~------  239 (313)
T 1ogq_A          170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASV-LFGSDKNTQKIHLAKNS-LAFDLGK------  239 (313)
T ss_dssp             GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCGG-GCCTTSCCSEEECCSSE-ECCBGGG------
T ss_pred             hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCCH-HHhcCCCCCEEECCCCc-eeeecCc------
Confidence            5566 999999999865556666676776 999999975 45544433 34578999999997764 3322211      


Q ss_pred             cccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEeccCCccccc
Q 036801          301 DAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAW  378 (388)
Q Consensus       301 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~  378 (388)
                            ...+++|++|+++++.-...++...  ..+++|++|++++++--..+|.. ..+++|+.+++.   ++.|-+
T Consensus       240 ------~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~---~N~~lc  305 (313)
T 1ogq_A          240 ------VGLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA---NNKCLC  305 (313)
T ss_dssp             ------CCCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTC---SSSEEE
T ss_pred             ------ccccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCcccccCCCC-ccccccChHHhc---CCCCcc
Confidence                  1246899999999975333566544  78999999999997655578776 578899999888   555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.73  E-value=2e-16  Score=151.89  Aligned_cols=239  Identities=15%  Similarity=0.188  Sum_probs=135.0

Q ss_pred             ccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEee
Q 036801           79 KLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLD  155 (388)
Q Consensus        79 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~  155 (388)
                      .++.+|...     .++++.|+++++ .+..++...+     ..+++|++|++++|.+    ..++.   ..+++|++|+
T Consensus        54 ~l~~iP~~~-----~~~l~~L~L~~n-~i~~~~~~~~-----~~l~~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           54 NLREVPDGI-----STNTRLLNLHEN-QIQIIKVNSF-----KHLRHLEILQLSRNHI----RTIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             CCSSCCSCC-----CTTCSEEECCSC-CCCEECTTTT-----SSCSSCCEEECCSSCC----CEECGGGGTTCSSCCEEE
T ss_pred             CcCcCCCCC-----CCCCcEEEccCC-cCCeeCHHHh-----hCCCCCCEEECCCCcC----CccChhhccCCccCCEEE
Confidence            444555442     455666666655 4555544443     4566666666666554    22222   2355666666


Q ss_pred             ccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCC
Q 036801          156 VEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSC  235 (388)
Q Consensus       156 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c  235 (388)
                      ++++....   ++...+..+++|+.|++..|.+   +. ++                    + ..+..+++|+.|++.+|
T Consensus       119 L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~i---~~-~~--------------------~-~~~~~l~~L~~L~l~~~  170 (440)
T 3zyj_A          119 LFDNRLTT---IPNGAFVYLSKLKELWLRNNPI---ES-IP--------------------S-YAFNRIPSLRRLDLGEL  170 (440)
T ss_dssp             CCSSCCSS---CCTTTSCSCSSCCEEECCSCCC---CE-EC--------------------T-TTTTTCTTCCEEECCCC
T ss_pred             CCCCcCCe---eCHhHhhccccCceeeCCCCcc---cc-cC--------------------H-HHhhhCcccCEeCCCCC
Confidence            66653222   3333456667777777755555   22 11                    1 34555667777777766


Q ss_pred             ccccccCC-CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccc
Q 036801          236 HHLINLVP-SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLN  314 (388)
Q Consensus       236 ~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~  314 (388)
                      ..+..++. .+..+++|++|+++++ .+..++.   ...+++|++|+++++ .++.+....           +..+++|+
T Consensus       171 ~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~-----------~~~l~~L~  234 (440)
T 3zyj_A          171 KRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN---LTPLIKLDELDLSGN-HLSAIRPGS-----------FQGLMHLQ  234 (440)
T ss_dssp             TTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC---CTTCSSCCEEECTTS-CCCEECTTT-----------TTTCTTCC
T ss_pred             CCcceeCcchhhcccccCeecCCCC-cCccccc---cCCCcccCEEECCCC-ccCccChhh-----------hccCccCC
Confidence            66665554 3456677777777654 4555543   235667777777555 344332111           12356777


Q ss_pred             eeecccccccceeccCcccccCCCcceEeccCCcccccCCCCC-cCCCCcceEEEeccCCcccccccCc
Q 036801          315 ELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGE-LSTPMLHKVQLNMWDEACWAWKEGL  382 (388)
Q Consensus       315 ~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~  382 (388)
                      .|++.++ .+..+.... +..+++|+.|+++++ +++.+|... ..+++|+.|++.   ++.|.++.++
T Consensus       235 ~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~---~Np~~CdC~l  297 (440)
T 3zyj_A          235 KLWMIQS-QIQVIERNA-FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLH---HNPWNCNCDI  297 (440)
T ss_dssp             EEECTTC-CCCEECTTS-STTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECC---SSCEECSSTT
T ss_pred             EEECCCC-ceeEEChhh-hcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcC---CCCccCCCCc
Confidence            7777775 455554432 356777888888774 566666543 456778888877   6666665543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.72  E-value=3.6e-16  Score=150.54  Aligned_cols=240  Identities=14%  Similarity=0.034  Sum_probs=104.8

Q ss_pred             cccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccc
Q 036801           63 IVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL  142 (388)
Q Consensus        63 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~  142 (388)
                      +..+++|++|++.++ ++..++..      .++|++|++++| .++.++ ..      ..+++|++|++++|.+    ..
T Consensus       149 ~~~l~~L~~L~l~~N-~l~~lp~~------~~~L~~L~L~~n-~l~~l~-~~------~~l~~L~~L~l~~N~l----~~  209 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNN-SLKKLPDL------PPSLEFIAAGNN-QLEELP-EL------QNLPFLTAIYADNNSL----KK  209 (454)
T ss_dssp             CTTCTTCCEEECCSS-CCSCCCCC------CTTCCEEECCSS-CCSSCC-CC------TTCTTCCEEECCSSCC----SS
T ss_pred             cCCCCCCCEEECCCC-cCcccCCC------cccccEEECcCC-cCCcCc-cc------cCCCCCCEEECCCCcC----Cc
Confidence            344555555555543 34443322      345555555555 333333 11      3566666666666554    22


Q ss_pred             cchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCC
Q 036801          143 FSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESS  221 (388)
Q Consensus       143 lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l  221 (388)
                      +|.. .++|++|+++++....   +|  .+..+++|+.|++..+.+   +. ++.. ..+|+..++.- .+.+++.    
T Consensus       210 l~~~-~~~L~~L~l~~n~l~~---lp--~~~~l~~L~~L~l~~N~l---~~-l~~~-~~~L~~L~l~~N~l~~l~~----  274 (454)
T 1jl5_A          210 LPDL-PLSLESIVAGNNILEE---LP--ELQNLPFLTTIYADNNLL---KT-LPDL-PPSLEALNVRDNYLTDLPE----  274 (454)
T ss_dssp             CCCC-CTTCCEEECCSSCCSS---CC--CCTTCTTCCEEECCSSCC---SS-CCSC-CTTCCEEECCSSCCSCCCC----
T ss_pred             CCCC-cCcccEEECcCCcCCc---cc--ccCCCCCCCEEECCCCcC---Cc-cccc-ccccCEEECCCCcccccCc----
Confidence            2221 2466666666653222   33  245666666666644555   21 2221 12233222222 3333321    


Q ss_pred             CCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCcc
Q 036801          222 SIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHD  301 (388)
Q Consensus       222 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~  301 (388)
                       .+++|+.|++++|. ++.++.   ..++|+.|+++++ .+..++.     ..++|++|+++++ .++.+..        
T Consensus       275 -~~~~L~~L~ls~N~-l~~l~~---~~~~L~~L~l~~N-~l~~i~~-----~~~~L~~L~Ls~N-~l~~lp~--------  334 (454)
T 1jl5_A          275 -LPQSLTFLDVSENI-FSGLSE---LPPNLYYLNASSN-EIRSLCD-----LPPSLEELNVSNN-KLIELPA--------  334 (454)
T ss_dssp             -CCTTCCEEECCSSC-CSEESC---CCTTCCEEECCSS-CCSEECC-----CCTTCCEEECCSS-CCSCCCC--------
T ss_pred             -ccCcCCEEECcCCc-cCcccC---cCCcCCEEECcCC-cCCcccC-----CcCcCCEEECCCC-ccccccc--------
Confidence             12456666665552 332221   1135555555543 3333221     1135666666443 2332211        


Q ss_pred             ccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccc--cCCCCCcCC-------------CCcceE
Q 036801          302 AAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNME--IFSRGELST-------------PMLHKV  366 (388)
Q Consensus       302 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~~-------------~~L~~l  366 (388)
                             .+++|+.|+++++ .+..++.     .+++|++|++++++-..  .+|..+..+             ++|+.+
T Consensus       335 -------~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L  401 (454)
T 1jl5_A          335 -------LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQL  401 (454)
T ss_dssp             -------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------
T ss_pred             -------cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEE
Confidence                   1356666666665 3455544     24667777776643222  344444333             566666


Q ss_pred             EEe
Q 036801          367 QLN  369 (388)
Q Consensus       367 ~l~  369 (388)
                      +++
T Consensus       402 ~ls  404 (454)
T 1jl5_A          402 HVE  404 (454)
T ss_dssp             ---
T ss_pred             ECC
Confidence            665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=9.9e-18  Score=153.96  Aligned_cols=269  Identities=13%  Similarity=0.120  Sum_probs=187.1

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      ..+++|++|++++| .++.+.|.+++   .+++|++|++++| .+...+.          +..+++|++|+++++ .+..
T Consensus        31 ~~~~~L~~L~L~~n-~l~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~~----------~~~l~~L~~L~Ls~n-~l~~   94 (317)
T 3o53_A           31 QSAWNVKELDLSGN-PLSQISAADLA---PFTKLELLNLSSN-VLYETLD----------LESLSTLRTLDLNNN-YVQE   94 (317)
T ss_dssp             TTGGGCSEEECTTS-CCCCCCHHHHT---TCTTCCEEECTTS-CCEEEEE----------ETTCTTCCEEECCSS-EEEE
T ss_pred             ccCCCCCEEECcCC-ccCcCCHHHhh---CCCcCCEEECCCC-cCCcchh----------hhhcCCCCEEECcCC-cccc
Confidence            35679999999996 56777667788   8999999999998 4555443          557899999999975 5665


Q ss_pred             ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccc
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDEL  162 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~  162 (388)
                      ++       ..++|++|++++| .+..++.        ..+++|++|++++|.+. .+.......+++|++|+++++...
T Consensus        95 l~-------~~~~L~~L~l~~n-~l~~~~~--------~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           95 LL-------VGPSIETLHAANN-NISRVSC--------SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             EE-------ECTTCCEEECCSS-CCSEEEE--------CCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             cc-------CCCCcCEEECCCC-ccCCcCc--------cccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCC
Confidence            54       3589999999998 5665543        35788999999998873 122223455889999999997644


Q ss_pred             cccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccC
Q 036801          163 TTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLV  242 (388)
Q Consensus       163 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~  242 (388)
                      .  ..+......+++|+.|++..+.+   +..                        .....+++|+.|++++| .++.++
T Consensus       158 ~--~~~~~~~~~l~~L~~L~L~~N~l---~~~------------------------~~~~~l~~L~~L~Ls~N-~l~~l~  207 (317)
T 3o53_A          158 T--VNFAELAASSDTLEHLNLQYNFI---YDV------------------------KGQVVFAKLKTLDLSSN-KLAFMG  207 (317)
T ss_dssp             E--EEGGGGGGGTTTCCEEECTTSCC---CEE------------------------ECCCCCTTCCEEECCSS-CCCEEC
T ss_pred             c--ccHHHHhhccCcCCEEECCCCcC---ccc------------------------ccccccccCCEEECCCC-cCCcch
Confidence            3  23333445789999999966677   332                        22224789999999988 567777


Q ss_pred             CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccc
Q 036801          243 PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLE  322 (388)
Q Consensus       243 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  322 (388)
                      +.+..+++|+.|+++++ .+..++..  ...+++|+.|++++++-.......           ....+++|+.|++.++.
T Consensus       208 ~~~~~l~~L~~L~L~~N-~l~~l~~~--~~~l~~L~~L~l~~N~~~~~~~~~-----------~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          208 PEFQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRD-----------FFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             GGGGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTCCCBHHHHHH-----------HHHTCHHHHHHHHHHHH
T ss_pred             hhhcccCcccEEECcCC-cccchhhH--hhcCCCCCEEEccCCCccCcCHHH-----------HHhccccceEEECCCch
Confidence            77888999999999975 67777663  457899999999876432111100           01236788888888776


Q ss_pred             ccceeccCcccccCCCcceEeccCCccc
Q 036801          323 SLRSFYSGYCALNFPSLERLLVDDCTNM  350 (388)
Q Consensus       323 ~l~~l~~~~~~~~~~~L~~L~l~~c~~l  350 (388)
                      .++......  ...+.+....-..|..+
T Consensus       274 ~l~~~~~~~--~~~~~~~~~~~~cc~~l  299 (317)
T 3o53_A          274 KLTGQNEEE--CTVPTLGHYGAYCCEDL  299 (317)
T ss_dssp             HHHSSSSCC--CSSTTCEEETTEEEBCC
T ss_pred             hccCCchhc--cCCCceecccceeeccC
Confidence            666544332  22343444333345443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.71  E-value=5.7e-16  Score=155.20  Aligned_cols=129  Identities=22%  Similarity=0.233  Sum_probs=81.7

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      ++++|++++ +.++.+++.+|.   ++++|++|+|++| +++.++...        +..+++|++|+++++ +++.++..
T Consensus        53 ~~~~LdLs~-N~i~~l~~~~f~---~l~~L~~L~Ls~N-~i~~i~~~~--------f~~L~~L~~L~Ls~N-~l~~l~~~  118 (635)
T 4g8a_A           53 STKNLDLSF-NPLRHLGSYSFF---SFPELQVLDLSRC-EIQTIEDGA--------YQSLSHLSTLILTGN-PIQSLALG  118 (635)
T ss_dssp             TCCEEECTT-SCCCEECTTTTT---TCTTCCEEECTTC-CCCEECTTT--------TTTCTTCCEEECTTC-CCCEECGG
T ss_pred             CCCEEEeeC-CCCCCCCHHHHh---CCCCCCEEECCCC-cCCCcChhH--------hcCCCCCCEEEccCC-cCCCCCHH
Confidence            678888887 457777666777   7888888888887 566665542        456777777777764 56666655


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeecccc
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFV  159 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~  159 (388)
                      .  +..+++|++|++++| .++.++...+     ..+++|++|++++|.+..  ...|.  +.+++|++|+++++
T Consensus       119 ~--f~~L~~L~~L~Ls~N-~l~~l~~~~~-----~~L~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          119 A--FSGLSSLQKLVAVET-NLASLENFPI-----GHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             G--GTTCTTCCEEECTTS-CCCCSTTCCC-----TTCTTCCEEECCSSCCCC--CCCCGGGGGCTTCCEEECCSS
T ss_pred             H--hcCCCCCCEEECCCC-cCCCCChhhh-----hcCcccCeeccccCcccc--CCCchhhccchhhhhhcccCc
Confidence            3  556777777777776 5555555444     466666666666665411  11122  23556666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.70  E-value=2.6e-16  Score=151.69  Aligned_cols=205  Identities=16%  Similarity=0.079  Sum_probs=163.7

Q ss_pred             CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801            2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT   81 (388)
Q Consensus         2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~   81 (388)
                      +.++++|++|++++| .++.+.|..+.   ++++|++|+|++| .+..++...        +..+++|++|++.++ .+.
T Consensus        95 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~  160 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRN-SIRQIEVGAFN---GLASLNTLELFDN-WLTVIPSGA--------FEYLSKLRELWLRNN-PIE  160 (452)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCSS-CCSBCCTTT--------SSSCTTCCEEECCSC-CCC
T ss_pred             cCCCCCCCEEECCCC-ccCCcChhhcc---CcccCCEEECCCC-cCCccChhh--------hcccCCCCEEECCCC-Ccc
Confidence            467899999999986 57777777788   8999999999998 566665542        557999999999975 688


Q ss_pred             cccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch-hhccCccEeeccccc
Q 036801           82 SFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK-DLLCKLKCLDVEFVD  160 (388)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~-~~l~~L~~L~l~~~~  160 (388)
                      .++...  +..+++|++|++++|..+..++...+     ..+++|++|++++|.+    ..+|. ..+++|+.|+++++.
T Consensus       161 ~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~-----~~l~~L~~L~L~~n~l----~~~~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          161 SIPSYA--FNRVPSLMRLDLGELKKLEYISEGAF-----EGLFNLKYLNLGMCNI----KDMPNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             EECTTT--TTTCTTCCEEECCCCTTCCEECTTTT-----TTCTTCCEEECTTSCC----SSCCCCTTCTTCCEEECTTSC
T ss_pred             eeCHhH--HhcCCcccEEeCCCCCCccccChhhc-----cCCCCCCEEECCCCcc----cccccccccccccEEECcCCc
Confidence            887765  77899999999999989998887766     6899999999999987    34443 458899999999986


Q ss_pred             cccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccc
Q 036801          161 ELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN  240 (388)
Q Consensus       161 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~  240 (388)
                      ...   .+...+..+++|+.|++..+.+   +.+.+                      ..+..+++|+.|++++| .++.
T Consensus       230 l~~---~~~~~~~~l~~L~~L~L~~n~l---~~~~~----------------------~~~~~l~~L~~L~L~~N-~l~~  280 (452)
T 3zyi_A          230 FPE---IRPGSFHGLSSLKKLWVMNSQV---SLIER----------------------NAFDGLASLVELNLAHN-NLSS  280 (452)
T ss_dssp             CSE---ECGGGGTTCTTCCEEECTTSCC---CEECT----------------------TTTTTCTTCCEEECCSS-CCSC
T ss_pred             Ccc---cCcccccCccCCCEEEeCCCcC---ceECH----------------------HHhcCCCCCCEEECCCC-cCCc
Confidence            543   4344788999999999966677   33322                      56677899999999998 5666


Q ss_pred             cCCC-CCCCCCcCEEEEecCC
Q 036801          241 LVPS-STSFQNLTTLEISHCN  260 (388)
Q Consensus       241 l~~~-~~~~~~L~~L~l~~c~  260 (388)
                      ++.. +..+++|+.|++++++
T Consensus       281 ~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          281 LPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CCTTSSTTCTTCCEEECCSSC
T ss_pred             cChHHhccccCCCEEEccCCC
Confidence            6553 5778999999998753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.9e-16  Score=147.53  Aligned_cols=253  Identities=11%  Similarity=0.039  Sum_probs=171.0

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      ++|++|+++++ .++.+++..++   ++++|++|++++| .+..++...        +..+++|++|+++++ .+..++.
T Consensus        52 ~~L~~L~l~~n-~i~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~  117 (353)
T 2z80_A           52 EAVKSLDLSNN-RITYISNSDLQ---RCVNLQALVLTSN-GINTIEEDS--------FSSLGSLEHLDLSYN-YLSNLSS  117 (353)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTT---TCTTCCEEECTTS-CCCEECTTT--------TTTCTTCCEEECCSS-CCSSCCH
T ss_pred             ccCcEEECCCC-cCcccCHHHhc---cCCCCCEEECCCC-ccCccCHhh--------cCCCCCCCEEECCCC-cCCcCCH
Confidence            58999999986 57777666788   8999999999998 576664432        567899999999874 6777765


Q ss_pred             CCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTT  164 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~  164 (388)
                      ..  +..+++|++|+++++ .+..++. ..+     ..+++|++|++++|...+.+..-....+++|++|+++++.... 
T Consensus       118 ~~--~~~l~~L~~L~L~~n-~l~~l~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-  188 (353)
T 2z80_A          118 SW--FKPLSSLTFLNLLGN-PYKTLGETSLF-----SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-  188 (353)
T ss_dssp             HH--HTTCTTCSEEECTTC-CCSSSCSSCSC-----TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-
T ss_pred             hH--hCCCccCCEEECCCC-CCcccCchhhh-----ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-
Confidence            53  567999999999988 5666665 333     6899999999999853322222223457899999999876433 


Q ss_pred             cccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-
Q 036801          165 ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP-  243 (388)
Q Consensus       165 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~-  243 (388)
                        .....+..+++|+.|++..+.+   + .++.                     ..+..+++|+.|++++|. ++..+. 
T Consensus       189 --~~~~~l~~l~~L~~L~l~~n~l---~-~~~~---------------------~~~~~~~~L~~L~L~~n~-l~~~~~~  240 (353)
T 2z80_A          189 --YEPKSLKSIQNVSHLILHMKQH---I-LLLE---------------------IFVDVTSSVECLELRDTD-LDTFHFS  240 (353)
T ss_dssp             --ECTTTTTTCSEEEEEEEECSCS---T-THHH---------------------HHHHHTTTEEEEEEESCB-CTTCCCC
T ss_pred             --cCHHHHhccccCCeecCCCCcc---c-cchh---------------------hhhhhcccccEEECCCCc-ccccccc
Confidence              3234678899999999966666   2 2221                     122246888999998874 333321 


Q ss_pred             C---CCCCCCcCEEEEecCCCceeecc---hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceee
Q 036801          244 S---STSFQNLTTLEISHCNGLKNVLT---FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELR  317 (388)
Q Consensus       244 ~---~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~  317 (388)
                      .   ....+.++.+.++++ .+.+...   ......+++|++|+++++ .++.+....           +..+++|+.|+
T Consensus       241 ~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~-----------~~~l~~L~~L~  307 (353)
T 2z80_A          241 ELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGI-----------FDRLTSLQKIW  307 (353)
T ss_dssp             ------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTT-----------TTTCTTCCEEE
T ss_pred             ccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHH-----------HhcCCCCCEEE
Confidence            1   234566788888765 2332111   113456788999999765 455443221           12468899999


Q ss_pred             ccccc
Q 036801          318 LLNLE  322 (388)
Q Consensus       318 l~~c~  322 (388)
                      +.+++
T Consensus       308 L~~N~  312 (353)
T 2z80_A          308 LHTNP  312 (353)
T ss_dssp             CCSSC
T ss_pred             eeCCC
Confidence            98865

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=1.9e-16  Score=144.52  Aligned_cols=242  Identities=20%  Similarity=0.185  Sum_probs=160.9

Q ss_pred             cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc--CC
Q 036801            9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS--TG   86 (388)
Q Consensus         9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~   86 (388)
                      +.++.++ .+++.+ |..     -.++|++|++++| .+..++...        +..+++|++|++.++ .+....  +.
T Consensus        10 ~~l~c~~-~~l~~i-p~~-----~~~~l~~L~L~~n-~l~~i~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~~~   72 (306)
T 2z66_A           10 TEIRCNS-KGLTSV-PTG-----IPSSATRLELESN-KLQSLPHGV--------FDKLTQLTKLSLSSN-GLSFKGCCSQ   72 (306)
T ss_dssp             TEEECCS-SCCSSC-CSC-----CCTTCCEEECCSS-CCCCCCTTT--------TTTCTTCSEEECCSS-CCCEEEEEEH
T ss_pred             CEEEcCC-CCcccC-CCC-----CCCCCCEEECCCC-ccCccCHhH--------hhccccCCEEECCCC-ccCcccCccc
Confidence            4566665 345555 432     3457889999888 466655431        457889999999874 455432  11


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc----hhhccCccEeeccccccc
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS----KDLLCKLKCLDVEFVDEL  162 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp----~~~l~~L~~L~l~~~~~~  162 (388)
                      .  ...+++|++|++++| .+..++...      ..+++|++|++++|.+    ..++    ...+++|++|+++++...
T Consensus        73 ~--~~~~~~L~~L~Ls~n-~i~~l~~~~------~~l~~L~~L~l~~n~l----~~~~~~~~~~~l~~L~~L~l~~n~l~  139 (306)
T 2z66_A           73 S--DFGTTSLKYLDLSFN-GVITMSSNF------LGLEQLEHLDFQHSNL----KQMSEFSVFLSLRNLIYLDISHTHTR  139 (306)
T ss_dssp             H--HHSCSCCCEEECCSC-SEEEEEEEE------ETCTTCCEEECTTSEE----ESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred             c--cccccccCEEECCCC-ccccChhhc------CCCCCCCEEECCCCcc----cccccchhhhhccCCCEEECCCCcCC
Confidence            1  345789999999888 566666554      5788999999988776    3332    345789999999887643


Q ss_pred             cccccchhHhhcCCCccEEEEEeccCCCCce-eecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcccccc
Q 036801          163 TTILSLDDFLQRFHTLKVLQIEGYNYWLPKE-KVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINL  241 (388)
Q Consensus       163 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l  241 (388)
                      .   .....+..+++|+.|++..+.+   .+ .++                      ..+..+++|+.|++++|......
T Consensus       140 ~---~~~~~~~~l~~L~~L~l~~n~l---~~~~~~----------------------~~~~~l~~L~~L~Ls~n~l~~~~  191 (306)
T 2z66_A          140 V---AFNGIFNGLSSLEVLKMAGNSF---QENFLP----------------------DIFTELRNLTFLDLSQCQLEQLS  191 (306)
T ss_dssp             E---CSTTTTTTCTTCCEEECTTCEE---GGGEEC----------------------SCCTTCTTCCEEECTTSCCCEEC
T ss_pred             c---cchhhcccCcCCCEEECCCCcc---ccccch----------------------hHHhhCcCCCEEECCCCCcCCcC
Confidence            3   3333677889999999954555   22 222                      55667889999999988433333


Q ss_pred             CCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecc-cccceeeccc
Q 036801          242 VPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAF-SKLNELRLLN  320 (388)
Q Consensus       242 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~  320 (388)
                      +..+..+++|+.|+++++ .+..++... ...+++|+.|+++++. ++......           ...+ ++|+.|++.+
T Consensus       192 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~~~~~L~~L~L~~  257 (306)
T 2z66_A          192 PTAFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNH-IMTSKKQE-----------LQHFPSSLAFLNLTQ  257 (306)
T ss_dssp             TTTTTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSC-CCBCSSSS-----------CCCCCTTCCEEECTT
T ss_pred             HHHhcCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCC-CcccCHHH-----------HHhhhccCCEEEccC
Confidence            556778899999999875 566665543 3568899999997764 43332211           1123 4899999988


Q ss_pred             cc
Q 036801          321 LE  322 (388)
Q Consensus       321 c~  322 (388)
                      ++
T Consensus       258 N~  259 (306)
T 2z66_A          258 ND  259 (306)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.68  E-value=1.3e-15  Score=151.38  Aligned_cols=252  Identities=19%  Similarity=0.074  Sum_probs=151.5

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      +++.|+++++ .++.+ |..+     .++|++|++++| .++.++.            .+++|++|+++++ ++..++. 
T Consensus        41 ~l~~L~ls~n-~L~~l-p~~l-----~~~L~~L~L~~N-~l~~lp~------------~l~~L~~L~Ls~N-~l~~lp~-   98 (622)
T 3g06_A           41 GNAVLNVGES-GLTTL-PDCL-----PAHITTLVIPDN-NLTSLPA------------LPPELRTLEVSGN-QLTSLPV-   98 (622)
T ss_dssp             CCCEEECCSS-CCSCC-CSCC-----CTTCSEEEECSC-CCSCCCC------------CCTTCCEEEECSC-CCSCCCC-
T ss_pred             CCcEEEecCC-CcCcc-Chhh-----CCCCcEEEecCC-CCCCCCC------------cCCCCCEEEcCCC-cCCcCCC-
Confidence            5788888874 45655 4422     357888999888 4665443            3678888888875 5776654 


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccc
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTIL  166 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~  166 (388)
                           .+++|++|++++| .++.++         ..+++|+.|++++|.+    ..+|.. +++|++|+++++....   
T Consensus        99 -----~l~~L~~L~Ls~N-~l~~l~---------~~l~~L~~L~L~~N~l----~~lp~~-l~~L~~L~Ls~N~l~~---  155 (622)
T 3g06_A           99 -----LPPGLLELSIFSN-PLTHLP---------ALPSGLCKLWIFGNQL----TSLPVL-PPGLQELSVSDNQLAS---  155 (622)
T ss_dssp             -----CCTTCCEEEECSC-CCCCCC---------CCCTTCCEEECCSSCC----SCCCCC-CTTCCEEECCSSCCSC---
T ss_pred             -----CCCCCCEEECcCC-cCCCCC---------CCCCCcCEEECCCCCC----CcCCCC-CCCCCEEECcCCcCCC---
Confidence                 2788899988887 455443         2457788888888876    445543 5888888888874322   


Q ss_pred             cchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCC
Q 036801          167 SLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSST  246 (388)
Q Consensus       167 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~  246 (388)
                      ++.    .+++|+.|.+..|.+   +. ++                         ..+++|+.|++++| .++.++.   
T Consensus       156 l~~----~~~~L~~L~L~~N~l---~~-l~-------------------------~~~~~L~~L~Ls~N-~l~~l~~---  198 (622)
T 3g06_A          156 LPA----LPSELCKLWAYNNQL---TS-LP-------------------------MLPSGLQELSVSDN-QLASLPT---  198 (622)
T ss_dssp             CCC----CCTTCCEEECCSSCC---SC-CC-------------------------CCCTTCCEEECCSS-CCSCCCC---
T ss_pred             cCC----ccCCCCEEECCCCCC---CC-Cc-------------------------ccCCCCcEEECCCC-CCCCCCC---
Confidence            222    356788888865666   22 22                         12356666666655 3343433   


Q ss_pred             CCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccce
Q 036801          247 SFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRS  326 (388)
Q Consensus       247 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  326 (388)
                      .+++|+.|.++++ .+..++.     .+++|++|+++++ .++.+.               ..+++|+.|+++++ .+..
T Consensus       199 ~~~~L~~L~L~~N-~l~~l~~-----~~~~L~~L~Ls~N-~L~~lp---------------~~l~~L~~L~Ls~N-~L~~  255 (622)
T 3g06_A          199 LPSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGN-RLTSLP---------------VLPSELKELMVSGN-RLTS  255 (622)
T ss_dssp             CCTTCCEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCCC---------------CCCTTCCEEECCSS-CCSC
T ss_pred             ccchhhEEECcCC-cccccCC-----CCCCCCEEEccCC-ccCcCC---------------CCCCcCcEEECCCC-CCCc
Confidence            2355666666643 3444432     2356666666443 343332               02356666666664 4554


Q ss_pred             eccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801          327 FYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN  369 (388)
Q Consensus       327 l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~  369 (388)
                      ++.     .+++|+.|++++| .++.+|..+..+++|+.|++.
T Consensus       256 lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          256 LPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             CCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECC
T ss_pred             CCc-----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEec
Confidence            444     2456666666654 455666555556666666665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.68  E-value=3.8e-16  Score=150.39  Aligned_cols=224  Identities=13%  Similarity=-0.003  Sum_probs=110.7

Q ss_pred             CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccc-------------cce
Q 036801            5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPR-------------LQY   71 (388)
Q Consensus         5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------L~~   71 (388)
                      ..+|++|.++++. ++.+ |.+++   ++++|++|++++|.-...++..         ++.+.+             ++.
T Consensus        10 ~~~L~~L~l~~n~-l~~i-P~~i~---~L~~L~~L~l~~n~~~~~~p~~---------~~~l~~L~~l~l~~c~~~~l~~   75 (454)
T 1jl5_A           10 NTFLQEPLRHSSN-LTEM-PVEAE---NVKSKTEYYNAWSEWERNAPPG---------NGEQREMAVSRLRDCLDRQAHE   75 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTT---------SCCCHHHHHHHHHHHHHHTCSE
T ss_pred             cccchhhhcccCc-hhhC-ChhHh---cccchhhhhccCCcccccCCcc---------cccchhcchhhhhhhhccCCCE
Confidence            4689999999865 5555 77788   8999999999998544344444         333443             477


Q ss_pred             EecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCc
Q 036801           72 LKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKL  151 (388)
Q Consensus        72 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L  151 (388)
                      |++.++ .+..++..      .++|++|+++++ .++.++         ...++|++|++++|.+    ..++.. .++|
T Consensus        76 L~l~~~-~l~~lp~~------~~~L~~L~l~~n-~l~~lp---------~~~~~L~~L~l~~n~l----~~l~~~-~~~L  133 (454)
T 1jl5_A           76 LELNNL-GLSSLPEL------PPHLESLVASCN-SLTELP---------ELPQSLKSLLVDNNNL----KALSDL-PPLL  133 (454)
T ss_dssp             EECTTS-CCSCCCSC------CTTCSEEECCSS-CCSSCC---------CCCTTCCEEECCSSCC----SCCCSC-CTTC
T ss_pred             EEecCC-ccccCCCC------cCCCCEEEccCC-cCCccc---------cccCCCcEEECCCCcc----CcccCC-CCCC
Confidence            888765 46665443      577888888776 444333         2346777777777665    222221 2577


Q ss_pred             cEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceE
Q 036801          152 KCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVIL  230 (388)
Q Consensus       152 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L  230 (388)
                      ++|+++++....   +|  .+..+++|++|++..+.+   +. +|.. ..+|+..++.- .+.++   ..++.+++|+.|
T Consensus       134 ~~L~L~~n~l~~---lp--~~~~l~~L~~L~l~~N~l---~~-lp~~-~~~L~~L~L~~n~l~~l---~~~~~l~~L~~L  200 (454)
T 1jl5_A          134 EYLGVSNNQLEK---LP--ELQNSSFLKIIDVDNNSL---KK-LPDL-PPSLEFIAAGNNQLEEL---PELQNLPFLTAI  200 (454)
T ss_dssp             CEEECCSSCCSS---CC--CCTTCTTCCEEECCSSCC---SC-CCCC-CTTCCEEECCSSCCSSC---CCCTTCTTCCEE
T ss_pred             CEEECcCCCCCC---Cc--ccCCCCCCCEEECCCCcC---cc-cCCC-cccccEEECcCCcCCcC---ccccCCCCCCEE
Confidence            777777764322   44  356677777777755555   22 3322 12333222222 33333   235566667777


Q ss_pred             EecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801          231 RVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC  285 (388)
Q Consensus       231 ~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  285 (388)
                      ++++|. ++.+|..   .++|+.|+++++ .+..++.   ...+++|++|+++++
T Consensus       201 ~l~~N~-l~~l~~~---~~~L~~L~l~~n-~l~~lp~---~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          201 YADNNS-LKKLPDL---PLSLESIVAGNN-ILEELPE---LQNLPFLTTIYADNN  247 (454)
T ss_dssp             ECCSSC-CSSCCCC---CTTCCEEECCSS-CCSSCCC---CTTCTTCCEEECCSS
T ss_pred             ECCCCc-CCcCCCC---cCcccEEECcCC-cCCcccc---cCCCCCCCEEECCCC
Confidence            766653 3333321   235666666654 3444442   235566666666543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.67  E-value=9.5e-16  Score=148.94  Aligned_cols=215  Identities=14%  Similarity=0.138  Sum_probs=108.4

Q ss_pred             CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801            5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS   84 (388)
Q Consensus         5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~   84 (388)
                      +++|++|++++| .++.++|.+++   .+++|++|+|++| .+...+.          +..+++|++|+++++ .+..++
T Consensus        33 ~~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~----------l~~l~~L~~L~Ls~N-~l~~l~   96 (487)
T 3oja_A           33 AWNVKELDLSGN-PLSQISAADLA---PFTKLELLNLSSN-VLYETLD----------LESLSTLRTLDLNNN-YVQELL   96 (487)
T ss_dssp             GGGCCEEECCSS-CCCCCCGGGGT---TCTTCCEEECTTS-CCEEEEE----------CTTCTTCCEEECCSS-EEEEEE
T ss_pred             CCCccEEEeeCC-cCCCCCHHHHh---CCCCCCEEEeeCC-CCCCCcc----------cccCCCCCEEEecCC-cCCCCC
Confidence            446666666664 34455455565   5666666666666 3433322          335666666666653 444433


Q ss_pred             CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccc
Q 036801           85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTT  164 (388)
Q Consensus        85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~  164 (388)
                             ..++|++|++++| .+..++.        ..+++|+.|++++|.+. ++.....+.+++|+.|+++++.... 
T Consensus        97 -------~~~~L~~L~L~~N-~l~~~~~--------~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~-  158 (487)
T 3oja_A           97 -------VGPSIETLHAANN-NISRVSC--------SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDT-  158 (487)
T ss_dssp             -------ECTTCCEEECCSS-CCCCEEE--------CCCSSCEEEECCSSCCC-SGGGBCGGGGSSEEEEECTTSCCCE-
T ss_pred             -------CCCCcCEEECcCC-cCCCCCc--------cccCCCCEEECCCCCCC-CCCchhhcCCCCCCEEECCCCCCCC-
Confidence                   1356666666665 3433322        23456666666666552 1111122345666666666653322 


Q ss_pred             cccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCC
Q 036801          165 ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPS  244 (388)
Q Consensus       165 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~  244 (388)
                       ..+......+++|+.|+++.|.+   +..                        .....+++|+.|++++| .++.+++.
T Consensus       159 -~~~~~l~~~l~~L~~L~Ls~N~l---~~~------------------------~~~~~l~~L~~L~Ls~N-~l~~~~~~  209 (487)
T 3oja_A          159 -VNFAELAASSDTLEHLNLQYNFI---YDV------------------------KGQVVFAKLKTLDLSSN-KLAFMGPE  209 (487)
T ss_dssp             -EEGGGGGGGTTTCCEEECTTSCC---CEE------------------------ECCCCCTTCCEEECCSS-CCCEECGG
T ss_pred             -cChHHHhhhCCcccEEecCCCcc---ccc------------------------cccccCCCCCEEECCCC-CCCCCCHh
Confidence             22222223556666666644444   221                        11113455666666555 34444444


Q ss_pred             CCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801          245 STSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC  285 (388)
Q Consensus       245 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  285 (388)
                      +..+++|+.|+++++ .+..+|..  ...+++|+.|++.++
T Consensus       210 ~~~l~~L~~L~Ls~N-~l~~lp~~--l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          210 FQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGN  247 (487)
T ss_dssp             GGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTC
T ss_pred             HcCCCCccEEEecCC-cCcccchh--hccCCCCCEEEcCCC
Confidence            555555666666543 34444432  234555555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.65  E-value=1e-15  Score=139.62  Aligned_cols=229  Identities=14%  Similarity=0.096  Sum_probs=161.8

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      ++|++|+++++ .++.+++..++   ++++|++|++++| .+..+....      .....+++|++|+++++ .+..++.
T Consensus        28 ~~l~~L~L~~n-~l~~i~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~------~~~~~~~~L~~L~Ls~n-~i~~l~~   95 (306)
T 2z66_A           28 SSATRLELESN-KLQSLPHGVFD---KLTQLTKLSLSSN-GLSFKGCCS------QSDFGTTSLKYLDLSFN-GVITMSS   95 (306)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS-CCCEEEEEE------HHHHSCSCCCEEECCSC-SEEEEEE
T ss_pred             CCCCEEECCCC-ccCccCHhHhh---ccccCCEEECCCC-ccCcccCcc------cccccccccCEEECCCC-ccccChh
Confidence            58999999986 46666555567   8999999999998 455442110      01446899999999975 5766655


Q ss_pred             CCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTT  164 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~  164 (388)
                      .   +..+++|++|+++++ .+..++. ..+     ..+++|++|++++|.+.. ...-....+++|++|+++++.... 
T Consensus        96 ~---~~~l~~L~~L~l~~n-~l~~~~~~~~~-----~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~-  164 (306)
T 2z66_A           96 N---FLGLEQLEHLDFQHS-NLKQMSEFSVF-----LSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQE-  164 (306)
T ss_dssp             E---EETCTTCCEEECTTS-EEESSTTTTTT-----TTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEGG-
T ss_pred             h---cCCCCCCCEEECCCC-cccccccchhh-----hhccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCcccc-
Confidence            4   557999999999987 5555544 223     588999999999987631 111113457899999999876432 


Q ss_pred             cccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-
Q 036801          165 ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP-  243 (388)
Q Consensus       165 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~-  243 (388)
                      ...+. .+..+++|+.|++..+.+   +...+                      ..+..+++|+.|++++|. ++.++. 
T Consensus       165 ~~~~~-~~~~l~~L~~L~Ls~n~l---~~~~~----------------------~~~~~l~~L~~L~L~~N~-l~~~~~~  217 (306)
T 2z66_A          165 NFLPD-IFTELRNLTFLDLSQCQL---EQLSP----------------------TAFNSLSSLQVLNMSHNN-FFSLDTF  217 (306)
T ss_dssp             GEECS-CCTTCTTCCEEECTTSCC---CEECT----------------------TTTTTCTTCCEEECTTSC-CSBCCSG
T ss_pred             ccchh-HHhhCcCCCEEECCCCCc---CCcCH----------------------HHhcCCCCCCEEECCCCc-cCccChh
Confidence            22333 677899999999966677   33322                      566678999999999884 444443 


Q ss_pred             CCCCCCCcCEEEEecCCCceeecchhhhhcc-CccCEEeecccc
Q 036801          244 SSTSFQNLTTLEISHCNGLKNVLTFLIAKTL-VRLREMKIESCA  286 (388)
Q Consensus       244 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~  286 (388)
                      .+..+++|+.|+++++ .+.......+ ..+ ++|++|++++++
T Consensus       218 ~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          218 PYKCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQND  259 (306)
T ss_dssp             GGTTCTTCCEEECTTS-CCCBCSSSSC-CCCCTTCCEEECTTCC
T ss_pred             hccCcccCCEeECCCC-CCcccCHHHH-HhhhccCCEEEccCCC
Confidence            5678899999999976 4555443322 345 489999997754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.65  E-value=1.2e-17  Score=166.49  Aligned_cols=163  Identities=14%  Similarity=0.061  Sum_probs=103.2

Q ss_pred             cCCCcccEEeEecCCCCcccc--ccc-----------ccccccccccceeeccccccccEeeeccccccccccc-ccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLF--SSS-----------TVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNI-VIFPR   68 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~--p~~-----------~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~-~~l~~   68 (388)
                      ..+++|++|++++|....+..  |..           +..  .+++|++|++++|. +......        .+ ..+++
T Consensus        63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~--~~~~L~~L~L~~~~-~~~~~~~--------~l~~~~~~  131 (594)
T 2p1m_B           63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS--SYTWLEEIRLKRMV-VTDDCLE--------LIAKSFKN  131 (594)
T ss_dssp             HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHH--HCTTCCEEEEESCB-CCHHHHH--------HHHHHCTT
T ss_pred             hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHH--hCCCCCeEEeeCcE-EcHHHHH--------HHHHhCCC
Confidence            357899999999987654321  111           122  67899999999983 3221111        02 25899


Q ss_pred             cceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecC-ccccccccc--h
Q 036801           69 LQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKY-ITTNKFLFS--K  145 (388)
Q Consensus        69 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~-~~~~~~~lp--~  145 (388)
                      |++|++.+|..+....... ....+++|++|++++|. +.......+ ..++..+++|++|+++++. .+ ....++  .
T Consensus       132 L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-i~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~  207 (594)
T 2p1m_B          132 FKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESD-VDDVSGHWL-SHFPDTYTSLVSLNISCLASEV-SFSALERLV  207 (594)
T ss_dssp             CCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCE-EECCCGGGG-GGSCTTCCCCCEEECTTCCSCC-CHHHHHHHH
T ss_pred             CcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCc-cCCcchHHH-HHHhhcCCcCcEEEecccCCcC-CHHHHHHHH
Confidence            9999999886665522111 13468999999999884 443221111 1223577899999998875 11 001111  1


Q ss_pred             hhccCccEeeccccccccccccchhHhhcCCCccEEEE
Q 036801          146 DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI  183 (388)
Q Consensus       146 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  183 (388)
                      ..+++|++|++++|.... . ++ ..+..+++|+.|.+
T Consensus       208 ~~~~~L~~L~L~~~~~~~-~-l~-~~~~~~~~L~~L~l  242 (594)
T 2p1m_B          208 TRCPNLKSLKLNRAVPLE-K-LA-TLLQRAPQLEELGT  242 (594)
T ss_dssp             HHCTTCCEEECCTTSCHH-H-HH-HHHHHCTTCSEEEC
T ss_pred             HhCCCCcEEecCCCCcHH-H-HH-HHHhcCCcceEccc
Confidence            237899999999986665 3 33 36778899999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.65  E-value=7.5e-17  Score=160.61  Aligned_cols=133  Identities=14%  Similarity=0.124  Sum_probs=79.7

Q ss_pred             CCccceEEecC---CccccccC------CCCCCCCCcCEEEEecCCC-ceeecchhhhhccCccCEEeeccccccccccc
Q 036801          224 MDNLVILRVSS---CHHLINLV------PSSTSFQNLTTLEISHCNG-LKNVLTFLIAKTLVRLREMKIESCAMITEIVL  293 (388)
Q Consensus       224 l~~L~~L~l~~---c~~l~~l~------~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  293 (388)
                      +++|+.|++.+   |..++..|      ..+..+++|+.|+++.|.+ +.+.....+...+++|++|++.+|. ++....
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~  480 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL  480 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH
Confidence            67899999974   44565532      2245688999999987654 3433333344568889999997664 432110


Q ss_pred             cCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccC--CCCCcCCCCcceEEEe
Q 036801          294 ADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIF--SRGELSTPMLHKVQLN  369 (388)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~l~l~  369 (388)
                      ..          ....+++|+.|++++|+ +.......+...+++|++|++++|. ++..  ..-...+|.++...+.
T Consensus       481 ~~----------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~  546 (592)
T 3ogk_B          481 ME----------FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIP  546 (592)
T ss_dssp             HH----------HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred             HH----------HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEec
Confidence            00          01135889999999987 4432111122468999999999987 4332  1112245666655444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=8.6e-16  Score=149.26  Aligned_cols=239  Identities=13%  Similarity=0.036  Sum_probs=170.7

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+++|++|++++| .+..++...        +..+++|++|+++++ .+...++    +..+++|++|++++| .++.++
T Consensus        32 ~~~~L~~L~Ls~n-~l~~~~~~~--------~~~l~~L~~L~Ls~N-~l~~~~~----l~~l~~L~~L~Ls~N-~l~~l~   96 (487)
T 3oja_A           32 SAWNVKELDLSGN-PLSQISAAD--------LAPFTKLELLNLSSN-VLYETLD----LESLSTLRTLDLNNN-YVQELL   96 (487)
T ss_dssp             TGGGCCEEECCSS-CCCCCCGGG--------GTTCTTCCEEECTTS-CCEEEEE----CTTCTTCCEEECCSS-EEEEEE
T ss_pred             cCCCccEEEeeCC-cCCCCCHHH--------HhCCCCCCEEEeeCC-CCCCCcc----cccCCCCCEEEecCC-cCCCCC
Confidence            4558999999998 566654321        668999999999975 5665443    346999999999998 566553


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCC
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLP  191 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  191 (388)
                                ..++|+.|++++|.+    ..++...+++|+.|+++++....   .+...+..+++|+.|+++.|.+   
T Consensus        97 ----------~~~~L~~L~L~~N~l----~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l---  156 (487)
T 3oja_A           97 ----------VGPSIETLHAANNNI----SRVSCSRGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEI---  156 (487)
T ss_dssp             ----------ECTTCCEEECCSSCC----CCEEECCCSSCEEEECCSSCCCS---GGGBCGGGGSSEEEEECTTSCC---
T ss_pred             ----------CCCCcCEEECcCCcC----CCCCccccCCCCEEECCCCCCCC---CCchhhcCCCCCCEEECCCCCC---
Confidence                      448899999999987    56666778999999999876433   3333567899999999966777   


Q ss_pred             ceeecCccccccceeeeeeccceeccccCCC-CCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhh
Q 036801          192 KEKVENGVEVIIREAYNCYDMKYILKHESSS-IMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLI  270 (388)
Q Consensus       192 ~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~-~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  270 (388)
                      +...+                      ..+. .+++|+.|++++|. ++.++. ...+++|+.|+++++ .+..++..  
T Consensus       157 ~~~~~----------------------~~l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~--  209 (487)
T 3oja_A          157 DTVNF----------------------AELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMGPE--  209 (487)
T ss_dssp             CEEEG----------------------GGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEECGG--
T ss_pred             CCcCh----------------------HHHhhhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCC-CCCCCCHh--
Confidence            44333                      3332 57899999999984 555543 345889999999975 67777664  


Q ss_pred             hhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccccc-ceeccCcccccCCCcceEeccCC
Q 036801          271 AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESL-RSFYSGYCALNFPSLERLLVDDC  347 (388)
Q Consensus       271 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~~~L~~L~l~~c  347 (388)
                      +..+++|+.|+++++ .++.+...            ...+++|+.|++.+++-. ..++.  ++..++.|+.+++..+
T Consensus       210 ~~~l~~L~~L~Ls~N-~l~~lp~~------------l~~l~~L~~L~l~~N~l~c~~~~~--~~~~l~~L~~l~~~~~  272 (487)
T 3oja_A          210 FQSAAGVTWISLRNN-KLVLIEKA------------LRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAKQTV  272 (487)
T ss_dssp             GGGGTTCSEEECTTS-CCCEECTT------------CCCCTTCCEEECTTCCBCHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred             HcCCCCccEEEecCC-cCcccchh------------hccCCCCCEEEcCCCCCcCcchHH--HHHhCCCCcEEecccc
Confidence            457899999999775 45544322            224689999999887533 23333  2356777777777533

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.63  E-value=8.5e-15  Score=145.64  Aligned_cols=235  Identities=19%  Similarity=0.149  Sum_probs=166.4

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      ++|++|++++|. ++.+ |.      .+++|++|++++| .+..++.            .+++|++|++.++ ++..++.
T Consensus        61 ~~L~~L~L~~N~-l~~l-p~------~l~~L~~L~Ls~N-~l~~lp~------------~l~~L~~L~Ls~N-~l~~l~~  118 (622)
T 3g06_A           61 AHITTLVIPDNN-LTSL-PA------LPPELRTLEVSGN-QLTSLPV------------LPPGLLELSIFSN-PLTHLPA  118 (622)
T ss_dssp             TTCSEEEECSCC-CSCC-CC------CCTTCCEEEECSC-CCSCCCC------------CCTTCCEEEECSC-CCCCCCC
T ss_pred             CCCcEEEecCCC-CCCC-CC------cCCCCCEEEcCCC-cCCcCCC------------CCCCCCEEECcCC-cCCCCCC
Confidence            689999999964 6655 33      4788999999998 4665444            4789999999874 6777665


Q ss_pred             CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTI  165 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~  165 (388)
                      .      +++|++|++++| .++.++         ..+++|++|++++|.+    ..+|. .+++|+.|+++++....  
T Consensus       119 ~------l~~L~~L~L~~N-~l~~lp---------~~l~~L~~L~Ls~N~l----~~l~~-~~~~L~~L~L~~N~l~~--  175 (622)
T 3g06_A          119 L------PSGLCKLWIFGN-QLTSLP---------VLPPGLQELSVSDNQL----ASLPA-LPSELCKLWAYNNQLTS--  175 (622)
T ss_dssp             C------CTTCCEEECCSS-CCSCCC---------CCCTTCCEEECCSSCC----SCCCC-CCTTCCEEECCSSCCSC--
T ss_pred             C------CCCcCEEECCCC-CCCcCC---------CCCCCCCEEECcCCcC----CCcCC-ccCCCCEEECCCCCCCC--
Confidence            2      799999999988 565443         3458999999999877    44443 46799999999875433  


Q ss_pred             ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801          166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS  245 (388)
Q Consensus       166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~  245 (388)
                       ++    ..+++|+.|++..|.+   +. ++                      .   .+++|+.|++.+| .++.++.  
T Consensus       176 -l~----~~~~~L~~L~Ls~N~l---~~-l~----------------------~---~~~~L~~L~L~~N-~l~~l~~--  218 (622)
T 3g06_A          176 -LP----MLPSGLQELSVSDNQL---AS-LP----------------------T---LPSELYKLWAYNN-RLTSLPA--  218 (622)
T ss_dssp             -CC----CCCTTCCEEECCSSCC---SC-CC----------------------C---CCTTCCEEECCSS-CCSSCCC--
T ss_pred             -Cc----ccCCCCcEEECCCCCC---CC-CC----------------------C---ccchhhEEECcCC-cccccCC--
Confidence             43    4578999999966777   22 22                      1   2367888888776 4555543  


Q ss_pred             CCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccc
Q 036801          246 TSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLR  325 (388)
Q Consensus       246 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  325 (388)
                       .+++|+.|+++++ .+..++     ..+++|++|+++++ .++.+..               .+++|+.|+++++ .+.
T Consensus       219 -~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~---------------~~~~L~~L~Ls~N-~L~  274 (622)
T 3g06_A          219 -LPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM---------------LPSGLLSLSVYRN-QLT  274 (622)
T ss_dssp             -CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC---------------CCTTCCEEECCSS-CCC
T ss_pred             -CCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc---------------ccccCcEEeCCCC-CCC
Confidence             3467888888764 566555     24577888888665 4554432               2477888888876 566


Q ss_pred             eeccCcccccCCCcceEeccCCc
Q 036801          326 SFYSGYCALNFPSLERLLVDDCT  348 (388)
Q Consensus       326 ~l~~~~~~~~~~~L~~L~l~~c~  348 (388)
                      .++...  ..+++|+.|++++++
T Consensus       275 ~lp~~l--~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          275 RLPESL--IHLSSETTVNLEGNP  295 (622)
T ss_dssp             SCCGGG--GGSCTTCEEECCSCC
T ss_pred             cCCHHH--hhccccCEEEecCCC
Confidence            776644  677888888888765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.63  E-value=3.2e-15  Score=131.40  Aligned_cols=212  Identities=11%  Similarity=0.099  Sum_probs=153.5

Q ss_pred             CCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCC
Q 036801           16 CMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPS   95 (388)
Q Consensus        16 ~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   95 (388)
                      |..++.+ |. +.     ++|++|++++| +++.++...        +..+++|++|++.++..+..++...  +..+++
T Consensus        20 c~~l~~i-p~-~~-----~~l~~L~l~~n-~l~~i~~~~--------~~~l~~L~~L~l~~n~~l~~i~~~~--f~~l~~   81 (239)
T 2xwt_C           20 CKDIQRI-PS-LP-----PSTQTLKLIET-HLRTIPSHA--------FSNLPNISRIYVSIDVTLQQLESHS--FYNLSK   81 (239)
T ss_dssp             ECSCSSC-CC-CC-----TTCCEEEEESC-CCSEECTTT--------TTTCTTCCEEEEECCSSCCEECTTT--EESCTT
T ss_pred             ccCcccc-CC-CC-----CcccEEEEeCC-cceEECHHH--------ccCCCCCcEEeCCCCCCcceeCHhH--cCCCcC
Confidence            4446655 43 44     26899999988 577766532        5578999999998754477777764  667899


Q ss_pred             ccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch-hhccCcc---EeeccccccccccccchhH
Q 036801           96 LKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK-DLLCKLK---CLDVEFVDELTTILSLDDF  171 (388)
Q Consensus        96 L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~-~~l~~L~---~L~l~~~~~~~~~~~~~~~  171 (388)
                      |++|++++|..++.++...+     ..+++|++|++++|.+    ..+|. ..+++|+   .|+++++..+.  .++...
T Consensus        82 L~~L~l~~~n~l~~i~~~~f-----~~l~~L~~L~l~~n~l----~~lp~~~~l~~L~~L~~L~l~~N~~l~--~i~~~~  150 (239)
T 2xwt_C           82 VTHIEIRNTRNLTYIDPDAL-----KELPLLKFLGIFNTGL----KMFPDLTKVYSTDIFFILEITDNPYMT--SIPVNA  150 (239)
T ss_dssp             CCEEEEEEETTCCEECTTSE-----ECCTTCCEEEEEEECC----CSCCCCTTCCBCCSEEEEEEESCTTCC--EECTTT
T ss_pred             CcEEECCCCCCeeEcCHHHh-----CCCCCCCEEeCCCCCC----ccccccccccccccccEEECCCCcchh--hcCccc
Confidence            99999998558888877665     6789999999999877    33443 4466776   99999874443  244446


Q ss_pred             hhcCCCcc-EEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-CCCCC-
Q 036801          172 LQRFHTLK-VLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP-SSTSF-  248 (388)
Q Consensus       172 ~~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~-  248 (388)
                      +..+++|+ .|++..+.+   + .++.                     ..+.. ++|+.|++.+|..++.+++ .+..+ 
T Consensus       151 ~~~l~~L~~~L~l~~n~l---~-~i~~---------------------~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~  204 (239)
T 2xwt_C          151 FQGLCNETLTLKLYNNGF---T-SVQG---------------------YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVY  204 (239)
T ss_dssp             TTTTBSSEEEEECCSCCC---C-EECT---------------------TTTTT-CEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred             ccchhcceeEEEcCCCCC---c-ccCH---------------------hhcCC-CCCCEEEcCCCCCcccCCHHHhhccc
Confidence            78899999 999966777   3 3332                     23333 7899999999876777755 45677 


Q ss_pred             CCcCEEEEecCCCceeecchhhhhccCccCEEeeccccc
Q 036801          249 QNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAM  287 (388)
Q Consensus       249 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~  287 (388)
                      ++|+.|++++ +.+..++..    .+++|+.|++.++..
T Consensus       205 ~~L~~L~l~~-N~l~~l~~~----~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          205 SGPSLLDVSQ-TSVTALPSK----GLEHLKELIARNTWT  238 (239)
T ss_dssp             BCCSEEECTT-CCCCCCCCT----TCTTCSEEECTTC--
T ss_pred             cCCcEEECCC-CccccCChh----HhccCceeeccCccC
Confidence            8999999987 467777653    578999999987653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=6.2e-15  Score=129.50  Aligned_cols=198  Identities=12%  Similarity=0.098  Sum_probs=144.8

Q ss_pred             cccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEee-cCccccccccch
Q 036801           67 PRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDA-KYITTNKFLFSK  145 (388)
Q Consensus        67 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~-~~~~~~~~~lp~  145 (388)
                      ++|+.|++.++ +++.++...  +..+++|++|+++++..++.++...+     ..+++|++|++++ +.+    ..++.
T Consensus        31 ~~l~~L~l~~n-~l~~i~~~~--~~~l~~L~~L~l~~n~~l~~i~~~~f-----~~l~~L~~L~l~~~n~l----~~i~~   98 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTIPSHA--FSNLPNISRIYVSIDVTLQQLESHSF-----YNLSKVTHIEIRNTRNL----TYIDP   98 (239)
T ss_dssp             TTCCEEEEESC-CCSEECTTT--TTTCTTCCEEEEECCSSCCEECTTTE-----ESCTTCCEEEEEEETTC----CEECT
T ss_pred             CcccEEEEeCC-cceEECHHH--ccCCCCCcEEeCCCCCCcceeCHhHc-----CCCcCCcEEECCCCCCe----eEcCH
Confidence            47999999874 688887765  67799999999999865888877665     6889999999998 666    44443


Q ss_pred             ---hhccCccEeeccccccccccccchhHhhcCCCcc---EEEEEec-cCCCCceeecCccccccceeeeeeccceeccc
Q 036801          146 ---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLK---VLQIEGY-NYWLPKEKVENGVEVIIREAYNCYDMKYILKH  218 (388)
Q Consensus       146 ---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~  218 (388)
                         ..+++|++|+++++....   +|.  +..+++|+   .|++..+ .+   +. ++                    + 
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~---lp~--~~~l~~L~~L~~L~l~~N~~l---~~-i~--------------------~-  148 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKM---FPD--LTKVYSTDIFFILEITDNPYM---TS-IP--------------------V-  148 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCS---CCC--CTTCCBCCSEEEEEEESCTTC---CE-EC--------------------T-
T ss_pred             HHhCCCCCCCEEeCCCCCCcc---ccc--cccccccccccEEECCCCcch---hh-cC--------------------c-
Confidence               347899999999876332   443  56677777   9999555 77   32 22                    2 


Q ss_pred             cCCCCCCccc-eEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhcc-CccCEEeeccccccccccccCC
Q 036801          219 ESSSIMDNLV-ILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTL-VRLREMKIESCAMITEIVLADD  296 (388)
Q Consensus       219 ~~l~~l~~L~-~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~i~~~~~  296 (388)
                      ..+..+++|+ .|+++++ .++.++......++|+.|+++++..+..++... ...+ ++|++|+++++ .++.+...  
T Consensus       149 ~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N-~l~~l~~~--  223 (239)
T 2xwt_C          149 NAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQT-SVTALPSK--  223 (239)
T ss_dssp             TTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTC-CCCCCCCT--
T ss_pred             ccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCC-ccccCChh--
Confidence            4566789999 9999887 456777655444889999999875688776653 3467 89999999764 45555321  


Q ss_pred             CCCccccccceecccccceeecccccc
Q 036801          297 DDDHDAAKDEVIAFSKLNELRLLNLES  323 (388)
Q Consensus       297 ~~~~~~~~~~~~~~~~L~~L~l~~c~~  323 (388)
                                  .|++|+.|++.++..
T Consensus       224 ------------~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          224 ------------GLEHLKELIARNTWT  238 (239)
T ss_dssp             ------------TCTTCSEEECTTC--
T ss_pred             ------------HhccCceeeccCccC
Confidence                        378999999988654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.62  E-value=8.4e-17  Score=160.28  Aligned_cols=314  Identities=12%  Similarity=0.036  Sum_probs=162.7

Q ss_pred             cCCCcccEEeEecCCCCccccccc---ccccccccccceeeccccccccEeeecccccccccccccccccceEecccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSS---TVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEK   79 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~---~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (388)
                      .++++|++|++++|. ++.....|   +..  .+++|++|+++++. +..+.....    ..-+..+++|++|++.++ .
T Consensus       161 ~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~--~~~~L~~L~L~~n~-~~~~~~~~l----~~~~~~~~~L~~L~L~~~-~  231 (592)
T 3ogk_B          161 THCRKIKTLLMEESS-FSEKDGKWLHELAQ--HNTSLEVLNFYMTE-FAKISPKDL----ETIARNCRSLVSVKVGDF-E  231 (592)
T ss_dssp             HHCTTCSEEECTTCE-EECCCSHHHHHHHH--HCCCCCEEECTTCC-CSSCCHHHH----HHHHHHCTTCCEEECSSC-B
T ss_pred             hhCCCCCEEECcccc-ccCcchhHHHHHHh--cCCCccEEEeeccC-CCccCHHHH----HHHHhhCCCCcEEeccCc-c
Confidence            368999999999985 33322221   222  68899999998873 331111100    001446889999999885 4


Q ss_pred             cccccCCCcccccCCCccEEEeecCCCceE---eccccc--------------C---CccccccCCccEEEEeecCcccc
Q 036801           80 LTSFSTGDVHMLEFPSLKELWISRCPGFMV---KFKRTT--------------N---DLTKKVFPNLEELIVDAKYITTN  139 (388)
Q Consensus        80 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---~~~~~~--------------~---~~~~~~l~~L~~L~i~~~~~~~~  139 (388)
                      +..++..   +..+++|++|.++.+.....   ......              .   ......+++|++|++++|.+.. 
T Consensus       232 ~~~l~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~-  307 (592)
T 3ogk_B          232 ILELVGF---FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET-  307 (592)
T ss_dssp             GGGGHHH---HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH-
T ss_pred             HHHHHHH---HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH-
Confidence            5554422   45577788887764322100   000000              0   0001234445555554444210 


Q ss_pred             ccccc--hhhccCccEeeccccccccccccchhHhhcCCCccEEEEE-----------eccCCCCceeecCcccccccee
Q 036801          140 KFLFS--KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIE-----------GYNYWLPKEKVENGVEVIIREA  206 (388)
Q Consensus       140 ~~~lp--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~-----------~~~l~~~~~~~~~~~~~~L~~~  206 (388)
                       ..++  ...+++|++|+++.+  .. +.........+++|++|++.           |+.+   +..            
T Consensus       308 -~~~~~~~~~~~~L~~L~L~~~--~~-~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~---~~~------------  368 (592)
T 3ogk_B          308 -EDHCTLIQKCPNLEVLETRNV--IG-DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV---SQR------------  368 (592)
T ss_dssp             -HHHHHHHTTCTTCCEEEEEGG--GH-HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC---CHH------------
T ss_pred             -HHHHHHHHhCcCCCEEeccCc--cC-HHHHHHHHHhCCCCCEEEeecCccccccccccCcc---CHH------------
Confidence             0011  123445555554421  11 11111233344455555552           2232   100            


Q ss_pred             eeeeccceeccccCCCCCCccceEEecCCcccccc-CCCC-CCCCCcCEEEEec---CCCceeecch----hhhhccCcc
Q 036801          207 YNCYDMKYILKHESSSIMDNLVILRVSSCHHLINL-VPSS-TSFQNLTTLEISH---CNGLKNVLTF----LIAKTLVRL  277 (388)
Q Consensus       207 ~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l-~~~~-~~~~~L~~L~l~~---c~~l~~~~~~----~~~~~~~~L  277 (388)
                             ++.  .....+++|++|++ +|..++.. +..+ ..+++|+.|++++   |+.+.+.+..    ..+..+++|
T Consensus       369 -------~~~--~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L  438 (592)
T 3ogk_B          369 -------GLI--ALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL  438 (592)
T ss_dssp             -------HHH--HHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred             -------HHH--HHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence                   000  11224678888888 44444321 1222 2477888888874   5566654321    234567889


Q ss_pred             CEEeeccccc-cccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccc--cCC
Q 036801          278 REMKIESCAM-ITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNME--IFS  354 (388)
Q Consensus       278 ~~L~l~~c~~-l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~--~l~  354 (388)
                      ++|++..|.. ++......          ....+++|+.|++.+|. +.+.....+...+++|++|++++|+ +.  .++
T Consensus       439 ~~L~L~~~~~~l~~~~~~~----------~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~  506 (592)
T 3ogk_B          439 RRFAFYLRQGGLTDLGLSY----------IGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA  506 (592)
T ss_dssp             CEEEEECCGGGCCHHHHHH----------HHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH
T ss_pred             CEEEEecCCCCccHHHHHH----------HHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH
Confidence            9999876653 22111000          01125789999998874 4432211123568999999999997 43  244


Q ss_pred             CCCcCCCCcceEEEec
Q 036801          355 RGELSTPMLHKVQLNM  370 (388)
Q Consensus       355 ~~~~~~~~L~~l~l~~  370 (388)
                      .....+++|+.+++++
T Consensus       507 ~~~~~l~~L~~L~ls~  522 (592)
T 3ogk_B          507 AAVTKLPSLRYLWVQG  522 (592)
T ss_dssp             HHHHHCSSCCEEEEES
T ss_pred             HHHHhcCccCeeECcC
Confidence            4344679999999985

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.60  E-value=5.4e-17  Score=161.68  Aligned_cols=316  Identities=13%  Similarity=0.060  Sum_probs=163.4

Q ss_pred             cCCCcccEEeEecCCCCccccccccccc-ccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSN-SSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT   81 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~   81 (388)
                      .++++|++|++++|. ++...+.++... ..+++|++|++++|.  ..+......    .-+..+++|++|++.+|..+.
T Consensus       153 ~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~----~l~~~~~~L~~L~L~~~~~~~  225 (594)
T 2p1m_B          153 ATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALE----RLVTRCPNLKSLKLNRAVPLE  225 (594)
T ss_dssp             HHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHH----HHHHHCTTCCEEECCTTSCHH
T ss_pred             HhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHH----HHHHhCCCCcEEecCCCCcHH
Confidence            368999999999976 444333333310 167799999999884  111111000    002357889999998875555


Q ss_pred             cccCCCcccccCCCccEEEeecC-------------------CCceEecccc--cCCcc---ccccCCccEEEEeecCcc
Q 036801           82 SFSTGDVHMLEFPSLKELWISRC-------------------PGFMVKFKRT--TNDLT---KKVFPNLEELIVDAKYIT  137 (388)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~l~~c-------------------~~l~~~~~~~--~~~~~---~~~l~~L~~L~i~~~~~~  137 (388)
                      .++..   ...+++|++|.+..|                   .+++.+....  ....+   ...+++|++|++++|.+.
T Consensus       226 ~l~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~  302 (594)
T 2p1m_B          226 KLATL---LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ  302 (594)
T ss_dssp             HHHHH---HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred             HHHHH---HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC
Confidence            53322   445677777764433                   3333321000  00001   125677888888776642


Q ss_pred             ccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEE-Ee--------ccCCCCceeecCcc---ccccce
Q 036801          138 TNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI-EG--------YNYWLPKEKVENGV---EVIIRE  205 (388)
Q Consensus       138 ~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~--------~~l~~~~~~~~~~~---~~~L~~  205 (388)
                      ..........+++|++|++.+|  .. +.........+++|++|++ .|        +.+   +......+   .++|+.
T Consensus       303 ~~~l~~~~~~~~~L~~L~l~~~--~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l---~~~~l~~l~~~~~~L~~  376 (594)
T 2p1m_B          303 SYDLVKLLCQCPKLQRLWVLDY--IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL---TEQGLVSVSMGCPKLES  376 (594)
T ss_dssp             HHHHHHHHTTCTTCCEEEEEGG--GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC---CHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhcCCCcCEEeCcCc--cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCCC---CHHHHHHHHHhchhHHH
Confidence            1100001234677777777776  22 1122223445777777777 32        222   11000000   122222


Q ss_pred             eeeee-ccceeccccCC-CCCCccceEEec-----CCccccccCC------CCCCCCCcCEEEEecCCCceeecchhhhh
Q 036801          206 AYNCY-DMKYILKHESS-SIMDNLVILRVS-----SCHHLINLVP------SSTSFQNLTTLEISHCNGLKNVLTFLIAK  272 (388)
Q Consensus       206 ~~l~l-~l~~i~~~~~l-~~l~~L~~L~l~-----~c~~l~~l~~------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  272 (388)
                      ..+.- .+..... ..+ ..+++|+.|++.     +|..++..+.      .+..+++|+.|++++  .+.+.....+..
T Consensus       377 L~~~~~~l~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~  453 (594)
T 2p1m_B          377 VLYFCRQMTNAAL-ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGT  453 (594)
T ss_dssp             EEEEESCCCHHHH-HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHH
T ss_pred             HHHhcCCcCHHHH-HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHH
Confidence            11110 1111100 111 146788888888     5666664322      135677888888864  454443333334


Q ss_pred             ccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcc
Q 036801          273 TLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTN  349 (388)
Q Consensus       273 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~  349 (388)
                      .+++|+.|++++|. ++.......          ...+++|+.|++++|+. ...........+++|+.|++++|+.
T Consensus       454 ~~~~L~~L~L~~~~-i~~~~~~~l----------~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          454 YAKKMEMLSVAFAG-DSDLGMHHV----------LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HCTTCCEEEEESCC-SSHHHHHHH----------HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             hchhccEeeccCCC-CcHHHHHHH----------HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            47888888887664 322111000          01368889999988864 3222111124578899999988875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.60  E-value=4.1e-14  Score=131.62  Aligned_cols=224  Identities=13%  Similarity=0.117  Sum_probs=120.4

Q ss_pred             cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801            9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV   88 (388)
Q Consensus         9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   88 (388)
                      +.++.++ ++++.+ |..+     .+++++|+|++| +++.++...        +..+++|++|+++++.-.+.++... 
T Consensus        12 ~~v~C~~-~~Lt~i-P~~l-----~~~l~~L~Ls~N-~i~~i~~~~--------f~~l~~L~~L~Ls~N~i~~~i~~~~-   74 (350)
T 4ay9_X           12 RVFLCQE-SKVTEI-PSDL-----PRNAIELRFVLT-KLRVIQKGA--------FSGFGDLEKIEISQNDVLEVIEADV-   74 (350)
T ss_dssp             TEEEEES-TTCCSC-CTTC-----CTTCSEEEEESC-CCSEECTTS--------STTCTTCCEEEEECCTTCCEECTTS-
T ss_pred             CEEEecC-CCCCcc-CcCc-----CCCCCEEEccCC-cCCCcCHHH--------HcCCCCCCEEECcCCCCCCccChhH-
Confidence            4555554 445555 4322     235778888877 577766542        4567788888887653334455443 


Q ss_pred             ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchh---hccCccEeecccccccccc
Q 036801           89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD---LLCKLKCLDVEFVDELTTI  165 (388)
Q Consensus        89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~---~l~~L~~L~l~~~~~~~~~  165 (388)
                       +..+++|+++...++.++..+++..+     ..+++|++|++++|.+    ..++..   ...++..+++.++..+. .
T Consensus        75 -f~~L~~l~~~l~~~~N~l~~l~~~~f-----~~l~~L~~L~l~~n~l----~~~~~~~~~~~~~l~~l~l~~~~~i~-~  143 (350)
T 4ay9_X           75 -FSNLPKLHEIRIEKANNLLYINPEAF-----QNLPNLQYLLISNTGI----KHLPDVHKIHSLQKVLLDIQDNINIH-T  143 (350)
T ss_dssp             -BCSCTTCCEEEEEEETTCCEECTTSB-----CCCTTCCEEEEEEECC----SSCCCCTTCCBSSCEEEEEESCTTCC-E
T ss_pred             -hhcchhhhhhhcccCCcccccCchhh-----hhcccccccccccccc----ccCCchhhcccchhhhhhhccccccc-c
Confidence             45567766665555557777766655     5777788888877766    333322   12344555554443333 1


Q ss_pred             ccchhHhhcC-CCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCC
Q 036801          166 LSLDDFLQRF-HTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPS  244 (388)
Q Consensus       166 ~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~  244 (388)
                       ++...+..+ ..++.|++..|.+   + .++                      ...-...+|++|.+.++..++.++..
T Consensus       144 -l~~~~f~~~~~~l~~L~L~~N~i---~-~i~----------------------~~~f~~~~L~~l~l~~~n~l~~i~~~  196 (350)
T 4ay9_X          144 -IERNSFVGLSFESVILWLNKNGI---Q-EIH----------------------NSAFNGTQLDELNLSDNNNLEELPND  196 (350)
T ss_dssp             -ECTTSSTTSBSSCEEEECCSSCC---C-EEC----------------------TTSSTTEEEEEEECTTCTTCCCCCTT
T ss_pred             -ccccchhhcchhhhhhccccccc---c-CCC----------------------hhhccccchhHHhhccCCcccCCCHH
Confidence             222222222 2455555544555   2 122                      11112345666666666566666543


Q ss_pred             -CCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeecccccccccc
Q 036801          245 -STSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIV  292 (388)
Q Consensus       245 -~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~  292 (388)
                       +..+++|+.|+++++ .+..++..    .+.+|+.|.+.+++.++.+.
T Consensus       197 ~f~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          197 VFHGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             TTTTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCCCCC
T ss_pred             HhccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcCcCC
Confidence             355666666666643 45555542    34555566555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.59  E-value=2e-14  Score=130.01  Aligned_cols=204  Identities=18%  Similarity=0.181  Sum_probs=130.0

Q ss_pred             ccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCcccc
Q 036801          122 VFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEV  201 (388)
Q Consensus       122 ~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~  201 (388)
                      .+++++++++.++.+    ..+|.+..++++.|+++++....   ++...+..+++|+.|++..+.+   +..       
T Consensus         8 ~l~~l~~l~~~~~~l----~~ip~~~~~~l~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~n~l---~~~-------   70 (290)
T 1p9a_G            8 KVASHLEVNCDKRNL----TALPPDLPKDTTILHLSENLLYT---FSLATLMPYTRLTQLNLDRAEL---TKL-------   70 (290)
T ss_dssp             CSTTCCEEECTTSCC----SSCCSCCCTTCCEEECTTSCCSE---EEGGGGTTCTTCCEEECTTSCC---CEE-------
T ss_pred             ccCCccEEECCCCCC----CcCCCCCCCCCCEEEcCCCcCCc---cCHHHhhcCCCCCEEECCCCcc---Ccc-------
Confidence            445555555555444    44555555566666666654322   3333566777888888855555   221       


Q ss_pred             ccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEe
Q 036801          202 IIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMK  281 (388)
Q Consensus       202 ~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~  281 (388)
                                       .....+++|+.|+++++ .++.+|..+..+++|+.|+++++ .+..++.. .+..+++|++|+
T Consensus        71 -----------------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~l~~L~~L~  130 (290)
T 1p9a_G           71 -----------------QVDGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLG-ALRGLGELQELY  130 (290)
T ss_dssp             -----------------ECCSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSS-TTTTCTTCCEEE
T ss_pred             -----------------cCCCCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHH-HHcCCCCCCEEE
Confidence                             11245677888888776 45667666677788888888754 56666543 234677888888


Q ss_pred             eccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCC
Q 036801          282 IESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTP  361 (388)
Q Consensus       282 l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~  361 (388)
                      ++++ .++.+....           +..+++|+.|++.++ .++.++... +..+++|++|++++ +.++.+|.++...+
T Consensus       131 L~~N-~l~~~~~~~-----------~~~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~L~~-N~l~~ip~~~~~~~  195 (290)
T 1p9a_G          131 LKGN-ELKTLPPGL-----------LTPTPKLEKLSLANN-NLTELPAGL-LNGLENLDTLLLQE-NSLYTIPKGFFGSH  195 (290)
T ss_dssp             CTTS-CCCCCCTTT-----------TTTCTTCCEEECTTS-CCSCCCTTT-TTTCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred             CCCC-CCCccChhh-----------cccccCCCEEECCCC-cCCccCHHH-hcCcCCCCEEECCC-CcCCccChhhcccc
Confidence            8654 344443211           123578888888775 577776654 35678888888887 46778888887778


Q ss_pred             CcceEEEeccCCccccccc
Q 036801          362 MLHKVQLNMWDEACWAWKE  380 (388)
Q Consensus       362 ~L~~l~l~~~~~~~~~~~~  380 (388)
                      .|+.++++   ++.|.+..
T Consensus       196 ~L~~l~L~---~Np~~C~c  211 (290)
T 1p9a_G          196 LLPFAFLH---GNPWLCNC  211 (290)
T ss_dssp             CCSEEECC---SCCBCCSG
T ss_pred             cCCeEEeC---CCCccCcC
Confidence            88888888   66666544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.59  E-value=2.8e-14  Score=128.74  Aligned_cols=205  Identities=14%  Similarity=0.087  Sum_probs=123.8

Q ss_pred             CCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHh
Q 036801           93 FPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFL  172 (388)
Q Consensus        93 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~  172 (388)
                      .++|++|+++++ .++.++...+     ..+++|++|++++|.+. .+..-....+++|++|+++++..+. . ++...+
T Consensus        31 ~~~l~~L~l~~n-~i~~~~~~~~-----~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~-~-~~~~~~  101 (285)
T 1ozn_A           31 PAASQRIFLHGN-RISHVPAASF-----RACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLR-S-VDPATF  101 (285)
T ss_dssp             CTTCSEEECTTS-CCCEECTTTT-----TTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCC-C-CCTTTT
T ss_pred             CCCceEEEeeCC-cCCccCHHHc-----ccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCcc-c-cCHHHh
Confidence            455666666555 4444444333     35556666666655441 1111112335566666666654333 2 323367


Q ss_pred             hcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-CCCCCCCc
Q 036801          173 QRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP-SSTSFQNL  251 (388)
Q Consensus       173 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L  251 (388)
                      ..+++|+.|++..+.+   +...+                      ..+..+++|++|++++|. ++.+++ .+..+++|
T Consensus       102 ~~l~~L~~L~l~~n~l---~~~~~----------------------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L  155 (285)
T 1ozn_A          102 HGLGRLHTLHLDRCGL---QELGP----------------------GLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNL  155 (285)
T ss_dssp             TTCTTCCEEECTTSCC---CCCCT----------------------TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred             cCCcCCCEEECCCCcC---CEECH----------------------hHhhCCcCCCEEECCCCc-ccccCHhHhccCCCc
Confidence            7788999999955566   32212                      556678899999998874 455544 36778899


Q ss_pred             CEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCc
Q 036801          252 TTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGY  331 (388)
Q Consensus       252 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~  331 (388)
                      ++|+++++ .+..++... ...+++|++|+++++. ++.+....           ...+++|+.|+++++ .+..++...
T Consensus       156 ~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~-----------~~~l~~L~~L~l~~n-~l~~~~~~~  220 (285)
T 1ozn_A          156 THLFLHGN-RISSVPERA-FRGLHSLDRLLLHQNR-VAHVHPHA-----------FRDLGRLMTLYLFAN-NLSALPTEA  220 (285)
T ss_dssp             CEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CCEECTTT-----------TTTCTTCCEEECCSS-CCSCCCHHH
T ss_pred             cEEECCCC-cccccCHHH-hcCccccCEEECCCCc-ccccCHhH-----------ccCcccccEeeCCCC-cCCcCCHHH
Confidence            99999875 666666542 3467888999887653 44332111           123578888888886 455555432


Q ss_pred             ccccCCCcceEeccCCc
Q 036801          332 CALNFPSLERLLVDDCT  348 (388)
Q Consensus       332 ~~~~~~~L~~L~l~~c~  348 (388)
                       +..+++|+.|++++++
T Consensus       221 -~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          221 -LAPLRALQYLRLNDNP  236 (285)
T ss_dssp             -HTTCTTCCEEECCSSC
T ss_pred             -cccCcccCEEeccCCC
Confidence             2567888888888764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.58  E-value=2.5e-14  Score=128.43  Aligned_cols=202  Identities=15%  Similarity=0.163  Sum_probs=122.3

Q ss_pred             ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801           35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT  114 (388)
Q Consensus        35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  114 (388)
                      +|++|++++| .+..++...        +..+++|++|++.++ .+..++...  +..+++|++|+++++ .+..++...
T Consensus        29 ~l~~L~ls~n-~l~~~~~~~--------~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~   95 (276)
T 2z62_A           29 STKNLDLSFN-PLRHLGSYS--------FFSFPELQVLDLSRC-EIQTIEDGA--YQSLSHLSTLILTGN-PIQSLALGA   95 (276)
T ss_dssp             TCCEEECTTC-CCCEECTTT--------TTTCTTCSEEECTTC-CCCEECTTT--TTTCTTCCEEECTTC-CCCEECTTT
T ss_pred             CccEEECCCC-cccccCHhH--------hccccCCcEEECCCC-cCCccCHHH--ccCCcCCCEEECCCC-ccCccChhh
Confidence            5778888777 466555421        556777888888764 566666554  556778888888777 555555444


Q ss_pred             cCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCcee
Q 036801          115 TNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEK  194 (388)
Q Consensus       115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  194 (388)
                      +     ..+++|++|++.+|.+. .+...+...+++|++|+++++.... ..++. .+..+++|+.|++..+.+   +..
T Consensus        96 ~-----~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~~l~~-~~~~l~~L~~L~Ls~N~l---~~~  164 (276)
T 2z62_A           96 F-----SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS-FKLPE-YFSNLTNLEHLDLSSNKI---QSI  164 (276)
T ss_dssp             T-----TTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCC-CCCCG-GGGGCTTCCEEECCSSCC---CEE
T ss_pred             h-----cCCccccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccce-ecCch-hhccCCCCCEEECCCCCC---CcC
Confidence            4     56778888888777652 1122234557788888887765332 11233 567788888888865666   332


Q ss_pred             ecCccccccceeeeeeccceeccccCCCCCCccc----eEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhh
Q 036801          195 VENGVEVIIREAYNCYDMKYILKHESSSIMDNLV----ILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLI  270 (388)
Q Consensus       195 ~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~----~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  270 (388)
                      .+                      ..+..+++|+    +|+++++ .++.+++......+|+.|+++++ .+..++.. .
T Consensus       165 ~~----------------------~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~-~  219 (276)
T 2z62_A          165 YC----------------------TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTN-QLKSVPDG-I  219 (276)
T ss_dssp             CG----------------------GGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSS-CCSCCCTT-T
T ss_pred             CH----------------------HHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCC-ceeecCHh-H
Confidence            21                      2222223333    6777665 34555554444557777777754 46555543 2


Q ss_pred             hhccCccCEEeeccc
Q 036801          271 AKTLVRLREMKIESC  285 (388)
Q Consensus       271 ~~~~~~L~~L~l~~c  285 (388)
                      ...+++|++|++++.
T Consensus       220 ~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          220 FDRLTSLQKIWLHTN  234 (276)
T ss_dssp             TTTCCSCCEEECCSS
T ss_pred             hcccccccEEEccCC
Confidence            346777777777643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.57  E-value=3.5e-14  Score=128.48  Aligned_cols=196  Identities=16%  Similarity=0.099  Sum_probs=123.4

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      +++++++++++++ ++++.+ |..+     .++++.|++++| .+..++...        +..+++|++|++.++ .+..
T Consensus         7 ~~l~~l~~l~~~~-~~l~~i-p~~~-----~~~l~~L~L~~N-~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~   69 (290)
T 1p9a_G            7 SKVASHLEVNCDK-RNLTAL-PPDL-----PKDTTILHLSEN-LLYTFSLAT--------LMPYTRLTQLNLDRA-ELTK   69 (290)
T ss_dssp             ECSTTCCEEECTT-SCCSSC-CSCC-----CTTCCEEECTTS-CCSEEEGGG--------GTTCTTCCEEECTTS-CCCE
T ss_pred             cccCCccEEECCC-CCCCcC-CCCC-----CCCCCEEEcCCC-cCCccCHHH--------hhcCCCCCEEECCCC-ccCc
Confidence            4677788888876 456655 3322     346888888887 455554331        556788888888764 5666


Q ss_pred             ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeecccc
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFV  159 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~  159 (388)
                      ++..    ..+++|++|+++++ .+..++...      ..+++|++|++++|.+    ..++.   ..+++|+.|+++++
T Consensus        70 ~~~~----~~l~~L~~L~Ls~N-~l~~l~~~~------~~l~~L~~L~l~~N~l----~~l~~~~~~~l~~L~~L~L~~N  134 (290)
T 1p9a_G           70 LQVD----GTLPVLGTLDLSHN-QLQSLPLLG------QTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGN  134 (290)
T ss_dssp             EECC----SCCTTCCEEECCSS-CCSSCCCCT------TTCTTCCEEECCSSCC----CCCCSSTTTTCTTCCEEECTTS
T ss_pred             ccCC----CCCCcCCEEECCCC-cCCcCchhh------ccCCCCCEEECCCCcC----cccCHHHHcCCCCCCEEECCCC
Confidence            5433    35788888888877 555555433      4677888888887776    34443   34567777777776


Q ss_pred             ccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcccc
Q 036801          160 DELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLI  239 (388)
Q Consensus       160 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~  239 (388)
                      ....   ++...+..+++|+.|++..|.+   +. ++                    + ..+..+++|+.|+++++ .++
T Consensus       135 ~l~~---~~~~~~~~l~~L~~L~L~~N~l---~~-l~--------------------~-~~~~~l~~L~~L~L~~N-~l~  185 (290)
T 1p9a_G          135 ELKT---LPPGLLTPTPKLEKLSLANNNL---TE-LP--------------------A-GLLNGLENLDTLLLQEN-SLY  185 (290)
T ss_dssp             CCCC---CCTTTTTTCTTCCEEECTTSCC---SC-CC--------------------T-TTTTTCTTCCEEECCSS-CCC
T ss_pred             CCCc---cChhhcccccCCCEEECCCCcC---Cc-cC--------------------H-HHhcCcCCCCEEECCCC-cCC
Confidence            4322   3444556677777777755555   22 22                    1 33445677777777666 455


Q ss_pred             ccCCCCCCCCCcCEEEEecC
Q 036801          240 NLVPSSTSFQNLTTLEISHC  259 (388)
Q Consensus       240 ~l~~~~~~~~~L~~L~l~~c  259 (388)
                      .+|..+...++|+.+.++++
T Consensus       186 ~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSC
T ss_pred             ccChhhcccccCCeEEeCCC
Confidence            66666666667777777654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.57  E-value=6.3e-15  Score=134.86  Aligned_cols=201  Identities=19%  Similarity=0.177  Sum_probs=127.7

Q ss_pred             cCCccEEEEeecCccccccccch----hhccCccEeeccccccccccccchhHhhcC-----CCccEEEEEeccCCCCce
Q 036801          123 FPNLEELIVDAKYITTNKFLFSK----DLLCKLKCLDVEFVDELTTILSLDDFLQRF-----HTLKVLQIEGYNYWLPKE  193 (388)
Q Consensus       123 l~~L~~L~i~~~~~~~~~~~lp~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~  193 (388)
                      +++|++|++++|.+.   ...|.    ..+++|++|+++++....   .|. .+..+     ++|++|++..+.+   ..
T Consensus        94 l~~L~~L~L~~n~l~---~~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~-~~~~l~~~~~~~L~~L~L~~N~l---~~  163 (312)
T 1wwl_A           94 ISGLQELTLENLEVT---GTAPPPLLEATGPDLNILNLRNVSWAT---RDA-WLAELQQWLKPGLKVLSIAQAHS---LN  163 (312)
T ss_dssp             TSCCCEEEEEEEBCB---SCCCCCSSSCCSCCCSEEEEESCBCSS---SSS-HHHHHHTTCCTTCCEEEEESCSC---CC
T ss_pred             cCCccEEEccCCccc---chhHHHHHHhcCCCccEEEccCCCCcc---hhH-HHHHHHHhhcCCCcEEEeeCCCC---cc
Confidence            455555555555442   12222    335566666666554322   232 34444     8899999976776   33


Q ss_pred             eecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccc--cCCCC--CCCCCcCEEEEecCCCceeecch-
Q 036801          194 KVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN--LVPSS--TSFQNLTTLEISHCNGLKNVLTF-  268 (388)
Q Consensus       194 ~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~--l~~~~--~~~~~L~~L~l~~c~~l~~~~~~-  268 (388)
                      ..+                      ..+..+++|+.|++++|...+.  ++...  ..+++|++|+++++ .+..++.. 
T Consensus       164 ~~~----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~  220 (312)
T 1wwl_A          164 FSC----------------------EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVC  220 (312)
T ss_dssp             CCT----------------------TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHH
T ss_pred             chH----------------------HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHH
Confidence            222                      5566788999999998864433  22233  67889999999875 55543221 


Q ss_pred             -hhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCC
Q 036801          269 -LIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDC  347 (388)
Q Consensus       269 -~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c  347 (388)
                       .+...+++|++|+++++. ++.......          ...+++|+.|+++++ .+..++...  .  ++|++|+++++
T Consensus       221 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~----------~~~l~~L~~L~Ls~N-~l~~ip~~~--~--~~L~~L~Ls~N  284 (312)
T 1wwl_A          221 SALAAARVQLQGLDLSHNS-LRDAAGAPS----------CDWPSQLNSLNLSFT-GLKQVPKGL--P--AKLSVLDLSYN  284 (312)
T ss_dssp             HHHHHTTCCCSEEECTTSC-CCSSCCCSC----------CCCCTTCCEEECTTS-CCSSCCSSC--C--SEEEEEECCSS
T ss_pred             HHHHhcCCCCCEEECCCCc-CCcccchhh----------hhhcCCCCEEECCCC-ccChhhhhc--c--CCceEEECCCC
Confidence             233467899999997653 444321110          123589999999997 577777755  2  89999999985


Q ss_pred             cccccCCCCCcCCCCcceEEEeccCCcccc
Q 036801          348 TNMEIFSRGELSTPMLHKVQLNMWDEACWA  377 (388)
Q Consensus       348 ~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~  377 (388)
                       .++.+|. +..+++|+.++++   ++.+.
T Consensus       285 -~l~~~p~-~~~l~~L~~L~L~---~N~l~  309 (312)
T 1wwl_A          285 -RLDRNPS-PDELPQVGNLSLK---GNPFL  309 (312)
T ss_dssp             -CCCSCCC-TTTSCEEEEEECT---TCTTT
T ss_pred             -CCCCChh-HhhCCCCCEEecc---CCCCC
Confidence             7888877 6688999999998   55544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.57  E-value=1.3e-13  Score=128.18  Aligned_cols=221  Identities=17%  Similarity=0.121  Sum_probs=144.6

Q ss_pred             ccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEee-cCccccccccc
Q 036801           66 FPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDA-KYITTNKFLFS  144 (388)
Q Consensus        66 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~-~~~~~~~~~lp  144 (388)
                      .+++++|++++ ++++.++.+.  +..+++|++|++++|..++.++...+     ..++++.++.+.+ +.+    ..++
T Consensus        29 ~~~l~~L~Ls~-N~i~~i~~~~--f~~l~~L~~L~Ls~N~i~~~i~~~~f-----~~L~~l~~~l~~~~N~l----~~l~   96 (350)
T 4ay9_X           29 PRNAIELRFVL-TKLRVIQKGA--FSGFGDLEKIEISQNDVLEVIEADVF-----SNLPKLHEIRIEKANNL----LYIN   96 (350)
T ss_dssp             CTTCSEEEEES-CCCSEECTTS--STTCTTCCEEEEECCTTCCEECTTSB-----CSCTTCCEEEEEEETTC----CEEC
T ss_pred             CCCCCEEEccC-CcCCCcCHHH--HcCCCCCCEEECcCCCCCCccChhHh-----hcchhhhhhhcccCCcc----cccC
Confidence            35688888876 4677777664  56788888888888865666666555     5677776655544 444    3343


Q ss_pred             h---hhccCccEeeccccccccccccchhHhhcCCCccEEEE-EeccCCCCceeecCccccccceeeeeeccceeccccC
Q 036801          145 K---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI-EGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHES  220 (388)
Q Consensus       145 ~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~  220 (388)
                      .   ..+++|++|+++++....   .+...+....++..+++ +++.+   . .++                    . ..
T Consensus        97 ~~~f~~l~~L~~L~l~~n~l~~---~~~~~~~~~~~l~~l~l~~~~~i---~-~l~--------------------~-~~  148 (350)
T 4ay9_X           97 PEAFQNLPNLQYLLISNTGIKH---LPDVHKIHSLQKVLLDIQDNINI---H-TIE--------------------R-NS  148 (350)
T ss_dssp             TTSBCCCTTCCEEEEEEECCSS---CCCCTTCCBSSCEEEEEESCTTC---C-EEC--------------------T-TS
T ss_pred             chhhhhcccccccccccccccc---CCchhhcccchhhhhhhcccccc---c-ccc--------------------c-cc
Confidence            3   235677777777654322   23223334455666666 44555   2 222                    2 33


Q ss_pred             CCCC-CccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCC
Q 036801          221 SSIM-DNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDD  299 (388)
Q Consensus       221 l~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~  299 (388)
                      +..+ ..++.|+++++ .++.++......++|+.+.+.+++.+..++.. +...+++|++|+++++ .++.+...     
T Consensus       149 f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N-~l~~lp~~-----  220 (350)
T 4ay9_X          149 FVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRT-RIHSLPSY-----  220 (350)
T ss_dssp             STTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTS-CCCCCCSS-----
T ss_pred             hhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCC-CcCccChh-----
Confidence            3333 46888888876 56777776666778888888888888888765 3357888999999665 56655421     


Q ss_pred             ccccccceecccccceeecccccccceeccCcccccCCCcceEeccC
Q 036801          300 HDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDD  346 (388)
Q Consensus       300 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~  346 (388)
                               .|.+|+.|.+.++.+++.+|.-   ..+++|+.+++.+
T Consensus       221 ---------~~~~L~~L~~l~~~~l~~lP~l---~~l~~L~~l~l~~  255 (350)
T 4ay9_X          221 ---------GLENLKKLRARSTYNLKKLPTL---EKLVALMEASLTY  255 (350)
T ss_dssp             ---------SCTTCCEEECTTCTTCCCCCCT---TTCCSCCEEECSC
T ss_pred             ---------hhccchHhhhccCCCcCcCCCc---hhCcChhhCcCCC
Confidence                     3678888888888888888752   4788888888864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.56  E-value=5.6e-14  Score=125.76  Aligned_cols=62  Identities=19%  Similarity=0.234  Sum_probs=29.4

Q ss_pred             CCCCCccceEEecCCccccccCC-CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801          221 SSIMDNLVILRVSSCHHLINLVP-SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC  285 (388)
Q Consensus       221 l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  285 (388)
                      +..+++|+.|++++| .++.+++ .+..+++|++|+++++ .+..++.. ....+++|+.|+++++
T Consensus       153 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          153 FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEG-AFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred             ccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHH-HhccccCCCEEEecCC
Confidence            344455555555554 2333332 2344555555555543 34444332 1234555666655443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.56  E-value=1.5e-15  Score=140.41  Aligned_cols=225  Identities=13%  Similarity=0.100  Sum_probs=145.0

Q ss_pred             cccEEeEecCCCCcccccccccccccc--cccceeeccccccccEeeecccccccccccccccccceEecccccccccc-
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSF--VRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF-   83 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-   83 (388)
                      .++.++++++. +.   +..++   .+  ++++.|++.++. +...+..         +..+++|++|++.++. +... 
T Consensus        48 ~~~~l~l~~~~-~~---~~~~~---~~~~~~l~~L~l~~n~-l~~~~~~---------~~~~~~L~~L~L~~~~-l~~~~  109 (336)
T 2ast_B           48 LWQTLDLTGKN-LH---PDVTG---RLLSQGVIAFRCPRSF-MDQPLAE---------HFSPFRVQHMDLSNSV-IEVST  109 (336)
T ss_dssp             TSSEEECTTCB-CC---HHHHH---HHHHTTCSEEECTTCE-ECSCCCS---------CCCCBCCCEEECTTCE-ECHHH
T ss_pred             hheeecccccc-CC---HHHHH---hhhhccceEEEcCCcc-ccccchh---------hccCCCCCEEEccCCC-cCHHH
Confidence            37788888753 32   34455   56  789999998873 4433332         4568899999998764 5432 


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc--hhhccCccEeecccccc
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS--KDLLCKLKCLDVEFVDE  161 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp--~~~l~~L~~L~l~~~~~  161 (388)
                      .+..  +..+++|++|++++|. +.......+     ..+++|++|++++|...+. ..++  ...+++|++|++++|..
T Consensus       110 ~~~~--~~~~~~L~~L~L~~~~-l~~~~~~~l-----~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~  180 (336)
T 2ast_B          110 LHGI--LSQCSKLQNLSLEGLR-LSDPIVNTL-----AKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFD  180 (336)
T ss_dssp             HHHH--HTTBCCCSEEECTTCB-CCHHHHHHH-----TTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTT
T ss_pred             HHHH--HhhCCCCCEEeCcCcc-cCHHHHHHH-----hcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCC
Confidence            2221  4568999999998883 442222222     4688999999998842211 1122  24588999999998854


Q ss_pred             ccccccchhHhhcCC-CccEEEE-Eec-cCCCCc-eeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcc
Q 036801          162 LTTILSLDDFLQRFH-TLKVLQI-EGY-NYWLPK-EKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHH  237 (388)
Q Consensus       162 ~~~~~~~~~~~~~l~-~L~~L~l-~~~-~l~~~~-~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~  237 (388)
                      ++ .......+..++ +|++|++ +|. .+   + ..++                      ..+..+++|+.|++++|..
T Consensus       181 l~-~~~~~~~~~~l~~~L~~L~l~~~~~~~---~~~~l~----------------------~~~~~~~~L~~L~l~~~~~  234 (336)
T 2ast_B          181 FT-EKHVQVAVAHVSETITQLNLSGYRKNL---QKSDLS----------------------TLVRRCPNLVHLDLSDSVM  234 (336)
T ss_dssp             CC-HHHHHHHHHHSCTTCCEEECCSCGGGS---CHHHHH----------------------HHHHHCTTCSEEECTTCTT
T ss_pred             cC-hHHHHHHHHhcccCCCEEEeCCCcccC---CHHHHH----------------------HHHhhCCCCCEEeCCCCCc
Confidence            54 322233677888 9999999 443 34   2 1111                      2334578999999999875


Q ss_pred             cc-ccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801          238 LI-NLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC  285 (388)
Q Consensus       238 l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  285 (388)
                      ++ ..+..+..+++|++|++++|..+.+.... ....+++|++|++.+|
T Consensus       235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred             CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc
Confidence            54 44456677899999999988644433222 2346889999999887

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.56  E-value=3.3e-14  Score=127.67  Aligned_cols=199  Identities=18%  Similarity=0.153  Sum_probs=130.5

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      +|++|+++++ .++.+++..++   ++++|++|++++| .+..++...        +..+++|++|++.++ .+..++..
T Consensus        29 ~l~~L~ls~n-~l~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~   94 (276)
T 2z62_A           29 STKNLDLSFN-PLRHLGSYSFF---SFPELQVLDLSRC-EIQTIEDGA--------YQSLSHLSTLILTGN-PIQSLALG   94 (276)
T ss_dssp             TCCEEECTTC-CCCEECTTTTT---TCTTCSEEECTTC-CCCEECTTT--------TTTCTTCCEEECTTC-CCCEECTT
T ss_pred             CccEEECCCC-cccccCHhHhc---cccCCcEEECCCC-cCCccCHHH--------ccCCcCCCEEECCCC-ccCccChh
Confidence            5888888875 46666565677   7888888888887 566655431        556888888888874 57776655


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc--hhhccCccEeeccccccccc
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS--KDLLCKLKCLDVEFVDELTT  164 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp--~~~l~~L~~L~l~~~~~~~~  164 (388)
                      .  +..+++|++|+++++ .+..++...+     ..+++|++|++++|.+..  ..+|  ...+++|++|+++++.... 
T Consensus        95 ~--~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~--~~l~~~~~~l~~L~~L~Ls~N~l~~-  163 (276)
T 2z62_A           95 A--FSGLSSLQKLVAVET-NLASLENFPI-----GHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQS-  163 (276)
T ss_dssp             T--TTTCTTCCEEECTTS-CCCCSTTCCC-----TTCTTCCEEECCSSCCCC--CCCCGGGGGCTTCCEEECCSSCCCE-
T ss_pred             h--hcCCccccEEECCCC-CccccCchhc-----ccCCCCCEEECcCCccce--ecCchhhccCCCCCEEECCCCCCCc-
Confidence            4  667888888888877 4555544333     577888888888877621  1133  2457788888888875433 


Q ss_pred             cccchhHhhcCCCcc----EEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccc
Q 036801          165 ILSLDDFLQRFHTLK----VLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN  240 (388)
Q Consensus       165 ~~~~~~~~~~l~~L~----~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~  240 (388)
                        .+...+..+++|+    .|++..+.+   +. ++.                     ..+ ...+|+.|++++|. ++.
T Consensus       164 --~~~~~~~~l~~L~~l~l~L~ls~n~l---~~-~~~---------------------~~~-~~~~L~~L~L~~n~-l~~  214 (276)
T 2z62_A          164 --IYCTDLRVLHQMPLLNLSLDLSLNPM---NF-IQP---------------------GAF-KEIRLKELALDTNQ-LKS  214 (276)
T ss_dssp             --ECGGGGHHHHTCTTCCEEEECCSSCC---CE-ECT---------------------TSS-CSCCEEEEECCSSC-CSC
T ss_pred             --CCHHHhhhhhhccccceeeecCCCcc---cc-cCc---------------------ccc-CCCcccEEECCCCc-eee
Confidence              2333445555555    667755666   22 221                     122 23478888888874 566


Q ss_pred             cCCC-CCCCCCcCEEEEecC
Q 036801          241 LVPS-STSFQNLTTLEISHC  259 (388)
Q Consensus       241 l~~~-~~~~~~L~~L~l~~c  259 (388)
                      ++.. +..+++|+.|+++++
T Consensus       215 ~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          215 VPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CCTTTTTTCCSCCEEECCSS
T ss_pred             cCHhHhcccccccEEEccCC
Confidence            6554 467888888888764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.55  E-value=3.8e-14  Score=126.86  Aligned_cols=149  Identities=18%  Similarity=0.250  Sum_probs=76.9

Q ss_pred             ccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCC
Q 036801            8 LTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGD   87 (388)
Q Consensus         8 L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   87 (388)
                      .+++++++ +.++.+ |..+     .+++++|++++| .+..++...        +..+++|++|++.++ .+..++...
T Consensus        18 ~~~l~~~~-~~l~~i-p~~~-----~~~l~~L~l~~n-~l~~~~~~~--------~~~l~~L~~L~l~~n-~l~~i~~~~   80 (270)
T 2o6q_A           18 KNSVDCSS-KKLTAI-PSNI-----PADTKKLDLQSN-KLSSLPSKA--------FHRLTKLRLLYLNDN-KLQTLPAGI   80 (270)
T ss_dssp             TTEEECTT-SCCSSC-CSCC-----CTTCSEEECCSS-CCSCCCTTS--------SSSCTTCCEEECCSS-CCSCCCTTT
T ss_pred             CCEEEccC-CCCCcc-CCCC-----CCCCCEEECcCC-CCCeeCHHH--------hcCCCCCCEEECCCC-ccCeeChhh
Confidence            45566655 334443 3221     234666666665 344433321        445666666666653 455555443


Q ss_pred             cccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccc
Q 036801           88 VHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTT  164 (388)
Q Consensus        88 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~  164 (388)
                        +..+++|++|+++++ .+..++...+     ..+++|++|++++|.+    ..++.   ..+++|++|+++++.... 
T Consensus        81 --~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~-  147 (270)
T 2o6q_A           81 --FKELKNLETLWVTDN-KLQALPIGVF-----DQLVNLAELRLDRNQL----KSLPPRVFDSLTKLTYLSLGYNELQS-  147 (270)
T ss_dssp             --TSSCTTCCEEECCSS-CCCCCCTTTT-----TTCSSCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred             --hcCCCCCCEEECCCC-cCCcCCHhHc-----ccccCCCEEECCCCcc----CeeCHHHhCcCcCCCEEECCCCcCCc-
Confidence              345666666666665 4444444433     4556666666666554    23332   335566666666654222 


Q ss_pred             cccchhHhhcCCCccEEEEEeccC
Q 036801          165 ILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       165 ~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                        ++...+..+++|+.|++..+.+
T Consensus       148 --~~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A          148 --LPKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             --CCTTTTTTCTTCCEEECCSSCC
T ss_pred             --cCHhHccCCcccceeEecCCcC
Confidence              3333455566666666644444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.55  E-value=5.6e-17  Score=156.53  Aligned_cols=142  Identities=17%  Similarity=0.084  Sum_probs=70.4

Q ss_pred             cCCCcccEEeEecCCCCccc----ccccccccccccccceeeccccccccEeeeccccccccccccccc----ccceEec
Q 036801            3 CGIQNLTHLTFYNCMNLRCL----FSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFP----RLQYLKM   74 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~----~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~----~L~~L~l   74 (388)
                      ..+++|++|++++|. ++..    .+..+.   .+++|++|++++|. +.+......       ...++    +|++|++
T Consensus        25 ~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~---~~~~L~~L~Ls~n~-l~~~~~~~l-------~~~l~~~~~~L~~L~L   92 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCG-LTEARCKDISSALR---VNPALAELNLRSNE-LGDVGVHCV-------LQGLQTPSCKIQKLSL   92 (461)
T ss_dssp             HHHTTCSEEEEESSC-CCHHHHHHHHHHHH---TCTTCCEEECTTCC-CHHHHHHHH-------HHTTCSTTCCCCEEEC
T ss_pred             hhcCCccEEEccCCC-CCHHHHHHHHHHHH---hCCCcCEEeCCCCc-CChHHHHHH-------HHHHhhCCCceeEEEc
Confidence            457888999998875 4421    234445   67889999998873 333111000       11233    5778888


Q ss_pred             cccccccccc----CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccc-cccch--hh
Q 036801           75 YDLEKLTSFS----TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNK-FLFSK--DL  147 (388)
Q Consensus        75 ~~~~~l~~~~----~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~-~~lp~--~~  147 (388)
                      .++ .+....    +..  +..+++|++|++++|. +.......+........++|++|++++|.+.... ..++.  ..
T Consensus        93 ~~n-~i~~~~~~~l~~~--l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  168 (461)
T 1z7x_W           93 QNC-CLTGAGCGVLSST--LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA  168 (461)
T ss_dssp             TTS-CCBGGGHHHHHHH--TTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred             cCC-CCCHHHHHHHHHH--HccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh
Confidence            765 344211    111  4457777777777763 3221111000000112345666666665542110 01111  12


Q ss_pred             ccCccEeeccccc
Q 036801          148 LCKLKCLDVEFVD  160 (388)
Q Consensus       148 l~~L~~L~l~~~~  160 (388)
                      +++|++|+++++.
T Consensus       169 ~~~L~~L~L~~n~  181 (461)
T 1z7x_W          169 KPDFKELTVSNND  181 (461)
T ss_dssp             CTTCCEEECCSSB
T ss_pred             CCCCCEEECcCCC
Confidence            4566666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.54  E-value=1.2e-14  Score=130.24  Aligned_cols=173  Identities=15%  Similarity=0.172  Sum_probs=98.8

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+++|++|++.++ .+..++.          +..+++|++|++.++ .+..++  .  +..+++|++|++++| .++.++
T Consensus        39 ~l~~L~~L~l~~~-~i~~~~~----------l~~l~~L~~L~l~~n-~l~~~~--~--l~~l~~L~~L~L~~n-~l~~~~  101 (272)
T 3rfs_A           39 ELNSIDQIIANNS-DIKSVQG----------IQYLPNVRYLALGGN-KLHDIS--A--LKELTNLTYLILTGN-QLQSLP  101 (272)
T ss_dssp             HHTTCCEEECTTS-CCCCCTT----------GGGCTTCCEEECTTS-CCCCCG--G--GTTCTTCCEEECTTS-CCCCCC
T ss_pred             cccceeeeeeCCC-Ccccccc----------cccCCCCcEEECCCC-CCCCch--h--hcCCCCCCEEECCCC-ccCccC
Confidence            5666666666665 2333221          445666666666653 344432  1  345666666666666 455454


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                      ...+     ..+++|++|++++|.+    ..++.   ..+++|++|+++++....   .+...+..+++|+.|++..+.+
T Consensus       102 ~~~~-----~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A          102 NGVF-----DKLTNLKELVLVENQL----QSLPDGVFDKLTNLTYLNLAHNQLQS---LPKGVFDKLTNLTELDLSYNQL  169 (272)
T ss_dssp             TTTT-----TTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC
T ss_pred             hhHh-----cCCcCCCEEECCCCcC----CccCHHHhccCCCCCEEECCCCccCc---cCHHHhccCccCCEEECCCCCc
Confidence            4433     4566667777666655    33332   345677777776663222   3333556677777777755555


Q ss_pred             CCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-CCCCCCCcCEEEEecC
Q 036801          189 WLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP-SSTSFQNLTTLEISHC  259 (388)
Q Consensus       189 ~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c  259 (388)
                         +.. +                    + ..+..+++|+.|++++|. ++.+++ .+..+++|+.|+++++
T Consensus       170 ---~~~-~--------------------~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          170 ---QSL-P--------------------E-GVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             ---CCC-C--------------------T-TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ---Ccc-C--------------------H-HHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCC
Confidence               221 1                    1 334566777788777764 444443 3467777888877765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.54  E-value=5.6e-15  Score=135.23  Aligned_cols=257  Identities=16%  Similarity=0.104  Sum_probs=161.0

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      +..++|++|.++++..  . .|..+.   ..  |++|+++++ .+..................+++|++|++.++ ++.+
T Consensus        40 ~~~~~L~~l~l~~n~l--~-~p~~~~---~~--L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~  109 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--A-DLGQFT---DI--IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENL-EVTG  109 (312)
T ss_dssp             EEEEECTTHHHHCCTT--C-CCHHHH---HH--HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBS
T ss_pred             ccCCCceeEeeccccc--c-cHHHHH---HH--Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccc
Confidence            3456788888887654  3 466555   33  999999997 45443222110000000115889999999985 5765


Q ss_pred             ccCCCcccccCCCccEEEeecCCCceEecccccCCcccccc-----CCccEEEEeecCccccccccch---hhccCccEe
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVF-----PNLEELIVDAKYITTNKFLFSK---DLLCKLKCL  154 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l-----~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L  154 (388)
                      ..+..+....+++|++|+++++ .++..+...      ..+     ++|++|++++|.+    ..++.   +.+++|++|
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~------~~l~~~~~~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L  178 (312)
T 1wwl_A          110 TAPPPLLEATGPDLNILNLRNV-SWATRDAWL------AELQQWLKPGLKVLSIAQAHS----LNFSCEQVRVFPALSTL  178 (312)
T ss_dssp             CCCCCSSSCCSCCCSEEEEESC-BCSSSSSHH------HHHHTTCCTTCCEEEEESCSC----CCCCTTTCCCCSSCCEE
T ss_pred             hhHHHHHHhcCCCccEEEccCC-CCcchhHHH------HHHHHhhcCCCcEEEeeCCCC----ccchHHHhccCCCCCEE
Confidence            3333201267999999999998 555553322      344     8999999999987    44443   358899999


Q ss_pred             eccccccccccc-cch-hHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEe
Q 036801          155 DVEFVDELTTIL-SLD-DFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRV  232 (388)
Q Consensus       155 ~l~~~~~~~~~~-~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l  232 (388)
                      +++++.... .. .+. ..+..+++|+.|++..+.+   +. ++.                 ++. ..+..+++|+.|++
T Consensus       179 ~Ls~N~l~~-~~~~~~~~~~~~l~~L~~L~L~~N~l---~~-~~~-----------------~~~-~~~~~l~~L~~L~L  235 (312)
T 1wwl_A          179 DLSDNPELG-ERGLISALCPLKFPTLQVLALRNAGM---ET-PSG-----------------VCS-ALAAARVQLQGLDL  235 (312)
T ss_dssp             ECCSCTTCH-HHHHHHHSCTTSCTTCCEEECTTSCC---CC-HHH-----------------HHH-HHHHTTCCCSEEEC
T ss_pred             ECCCCCcCc-chHHHHHHHhccCCCCCEEECCCCcC---cc-hHH-----------------HHH-HHHhcCCCCCEEEC
Confidence            999986432 11 121 1227889999999966676   31 110                 000 22235689999999


Q ss_pred             cCCccccccC-CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceeccc
Q 036801          233 SSCHHLINLV-PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFS  311 (388)
Q Consensus       233 ~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~  311 (388)
                      ++|......+ .....+++|++|+++++ .+..++...    .++|++|+++++ .++.+..             ...++
T Consensus       236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~----~~~L~~L~Ls~N-~l~~~p~-------------~~~l~  296 (312)
T 1wwl_A          236 SHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGL----PAKLSVLDLSYN-RLDRNPS-------------PDELP  296 (312)
T ss_dssp             TTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSC----CSEEEEEECCSS-CCCSCCC-------------TTTSC
T ss_pred             CCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhc----cCCceEEECCCC-CCCCChh-------------HhhCC
Confidence            9884333232 34456789999999875 566666531    278999999665 4555522             11468


Q ss_pred             ccceeeccccc
Q 036801          312 KLNELRLLNLE  322 (388)
Q Consensus       312 ~L~~L~l~~c~  322 (388)
                      +|+.|++.+.+
T Consensus       297 ~L~~L~L~~N~  307 (312)
T 1wwl_A          297 QVGNLSLKGNP  307 (312)
T ss_dssp             EEEEEECTTCT
T ss_pred             CCCEEeccCCC
Confidence            99999998853

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.53  E-value=2.3e-15  Score=139.02  Aligned_cols=250  Identities=15%  Similarity=0.163  Sum_probs=160.9

Q ss_pred             ccceeeccccccccEeeecccccccccccccc--cccceEecccccccccccCCCcccccCCCccEEEeecCCCceE--e
Q 036801           35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIF--PRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMV--K  110 (388)
Q Consensus        35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~  110 (388)
                      .++.++++++. +.  +..         +..+  ++++.|++.++ .+......   ...+++|++|++++|. +..  +
T Consensus        48 ~~~~l~l~~~~-~~--~~~---------~~~~~~~~l~~L~l~~n-~l~~~~~~---~~~~~~L~~L~L~~~~-l~~~~~  110 (336)
T 2ast_B           48 LWQTLDLTGKN-LH--PDV---------TGRLLSQGVIAFRCPRS-FMDQPLAE---HFSPFRVQHMDLSNSV-IEVSTL  110 (336)
T ss_dssp             TSSEEECTTCB-CC--HHH---------HHHHHHTTCSEEECTTC-EECSCCCS---CCCCBCCCEEECTTCE-ECHHHH
T ss_pred             hheeecccccc-CC--HHH---------HHhhhhccceEEEcCCc-cccccchh---hccCCCCCEEEccCCC-cCHHHH
Confidence            47888888763 22  111         3445  88999999874 56665544   4468999999999884 432  2


Q ss_pred             cccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEE-EeccCC
Q 036801          111 FKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI-EGYNYW  189 (388)
Q Consensus       111 ~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l~  189 (388)
                      +...      ..+++|++|++++|.+... ..-....+++|++|++++|..++ .......+..+++|+.|++ +|..+ 
T Consensus       111 ~~~~------~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~-~~~l~~~~~~~~~L~~L~l~~~~~l-  181 (336)
T 2ast_B          111 HGIL------SQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFS-EFALQTLLSSCSRLDELNLSWCFDF-  181 (336)
T ss_dssp             HHHH------TTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCC-HHHHHHHHHHCTTCCEEECCCCTTC-
T ss_pred             HHHH------hhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCC-HHHHHHHHhcCCCCCEEcCCCCCCc-
Confidence            2222      5789999999999876311 11122348899999999986555 3222336788999999999 54366 


Q ss_pred             CCcee-ecCccccccceeeeeeccceeccccCCCCCC-ccceEEecCCc-cc--cccCCCCCCCCCcCEEEEecCCCcee
Q 036801          190 LPKEK-VENGVEVIIREAYNCYDMKYILKHESSSIMD-NLVILRVSSCH-HL--INLVPSSTSFQNLTTLEISHCNGLKN  264 (388)
Q Consensus       190 ~~~~~-~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~-~L~~L~l~~c~-~l--~~l~~~~~~~~~L~~L~l~~c~~l~~  264 (388)
                        +.. ++                      ..+..++ +|++|++++|. .+  ..++..+..+++|+.|++++|..+.+
T Consensus       182 --~~~~~~----------------------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  237 (336)
T 2ast_B          182 --TEKHVQ----------------------VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN  237 (336)
T ss_dssp             --CHHHHH----------------------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred             --ChHHHH----------------------HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence              321 11                      3344667 99999999985 34  33445556789999999998875654


Q ss_pred             ecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccC-CCcceEe
Q 036801          265 VLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNF-PSLERLL  343 (388)
Q Consensus       265 ~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~-~~L~~L~  343 (388)
                      .... .+..+++|++|++++|..+.......           ...+++|+.|++.+|     ++... +..+ ..++.|+
T Consensus       238 ~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-----------l~~~~~L~~L~l~~~-----i~~~~-~~~l~~~l~~L~  299 (336)
T 2ast_B          238 DCFQ-EFFQLNYLQHLSLSRCYDIIPETLLE-----------LGEIPTLKTLQVFGI-----VPDGT-LQLLKEALPHLQ  299 (336)
T ss_dssp             GGGG-GGGGCTTCCEEECTTCTTCCGGGGGG-----------GGGCTTCCEEECTTS-----SCTTC-HHHHHHHSTTSE
T ss_pred             HHHH-HHhCCCCCCEeeCCCCCCCCHHHHHH-----------HhcCCCCCEEeccCc-----cCHHH-HHHHHhhCcceE
Confidence            3333 23577999999999886443221100           224789999999988     22221 1122 3356666


Q ss_pred             ccCCcccccC
Q 036801          344 VDDCTNMEIF  353 (388)
Q Consensus       344 l~~c~~l~~l  353 (388)
                      +. |+.++..
T Consensus       300 l~-~n~l~~~  308 (336)
T 2ast_B          300 IN-CSHFTTI  308 (336)
T ss_dssp             ES-CCCSCCT
T ss_pred             Ee-cccCccc
Confidence            75 4566553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.53  E-value=8e-14  Score=127.23  Aligned_cols=188  Identities=13%  Similarity=0.144  Sum_probs=99.5

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+++|++|++.+| .+..++ .         +..+++|++|+++++ .+.+++.    +..+++|++|++++| .+..++
T Consensus        39 ~l~~L~~L~l~~~-~i~~l~-~---------~~~l~~L~~L~L~~n-~i~~~~~----~~~l~~L~~L~L~~n-~l~~~~  101 (308)
T 1h6u_A           39 DLDGITTLSAFGT-GVTTIE-G---------VQYLNNLIGLELKDN-QITDLAP----LKNLTKITELELSGN-PLKNVS  101 (308)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-T---------GGGCTTCCEEECCSS-CCCCCGG----GTTCCSCCEEECCSC-CCSCCG
T ss_pred             HcCCcCEEEeeCC-CccCch-h---------hhccCCCCEEEccCC-cCCCChh----HccCCCCCEEEccCC-cCCCch
Confidence            4556666666665 344332 1         345566666666553 3444432    224566666666665 344332


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccc-hhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCC
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS-KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWL  190 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  190 (388)
                      .  +     ..+++|++|++++|.+.    .++ ...+++|++|+++++....   .+  .+..+++|+.|++..+.+  
T Consensus       102 ~--~-----~~l~~L~~L~l~~n~l~----~~~~l~~l~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~l~~n~l--  163 (308)
T 1h6u_A          102 A--I-----AGLQSIKTLDLTSTQIT----DVTPLAGLSNLQVLYLDLNQITN---IS--PLAGLTNLQYLSIGNAQV--  163 (308)
T ss_dssp             G--G-----TTCTTCCEEECTTSCCC----CCGGGTTCTTCCEEECCSSCCCC---CG--GGGGCTTCCEEECCSSCC--
T ss_pred             h--h-----cCCCCCCEEECCCCCCC----CchhhcCCCCCCEEECCCCccCc---Cc--cccCCCCccEEEccCCcC--
Confidence            1  1     35566666666665542    222 3445666666666654322   22  155666777777644454  


Q ss_pred             CceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhh
Q 036801          191 PKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLI  270 (388)
Q Consensus       191 ~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  270 (388)
                       +. +                       ..+..+++|+.|++++| .++.+++ +..+++|+.|+++++ .+.+++.   
T Consensus       164 -~~-~-----------------------~~l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~---  212 (308)
T 1h6u_A          164 -SD-L-----------------------TPLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP---  212 (308)
T ss_dssp             -CC-C-----------------------GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG---
T ss_pred             -CC-C-----------------------hhhcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC-ccCcccc---
Confidence             21 1                       12445566777777665 3444433 556667777777654 4544442   


Q ss_pred             hhccCccCEEeeccc
Q 036801          271 AKTLVRLREMKIESC  285 (388)
Q Consensus       271 ~~~~~~L~~L~l~~c  285 (388)
                      ...+++|+.|+++++
T Consensus       213 l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          213 LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             GTTCTTCCEEEEEEE
T ss_pred             ccCCCCCCEEEccCC
Confidence            245667777777554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.49  E-value=5.5e-16  Score=149.60  Aligned_cols=329  Identities=15%  Similarity=0.129  Sum_probs=189.5

Q ss_pred             CCcccEEeEecCCCCccccccc-ccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            5 IQNLTHLTFYNCMNLRCLFSSS-TVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         5 l~~L~~L~l~~~~~~~~~~p~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      .++|++|+++++. ++...... +.   .+++|++|++++|. +.......    ....+..+++|++|+++++ .+.+.
T Consensus         2 ~~~l~~L~Ls~~~-l~~~~~~~~~~---~~~~L~~L~L~~~~-l~~~~~~~----l~~~l~~~~~L~~L~Ls~n-~l~~~   71 (461)
T 1z7x_W            2 SLDIQSLDIQCEE-LSDARWAELLP---LLQQCQVVRLDDCG-LTEARCKD----ISSALRVNPALAELNLRSN-ELGDV   71 (461)
T ss_dssp             CEEEEEEEEESCC-CCHHHHHHHHH---HHTTCSEEEEESSC-CCHHHHHH----HHHHHHTCTTCCEEECTTC-CCHHH
T ss_pred             Cccceehhhhhcc-cCchhHHHHHh---hcCCccEEEccCCC-CCHHHHHH----HHHHHHhCCCcCEEeCCCC-cCChH
Confidence            4689999999764 55443333 44   79999999999994 44211000    0011556899999999985 45542


Q ss_pred             cCCCcccccCC----CccEEEeecCCCceE-----ecccccCCccccccCCccEEEEeecCcccc-ccccchh---hccC
Q 036801           84 STGDVHMLEFP----SLKELWISRCPGFMV-----KFKRTTNDLTKKVFPNLEELIVDAKYITTN-KFLFSKD---LLCK  150 (388)
Q Consensus        84 ~~~~~~~~~~~----~L~~L~l~~c~~l~~-----~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~-~~~lp~~---~l~~  150 (388)
                      .... ....++    +|++|++++| .+..     ++...      ..+++|++|++++|.+... ...+...   ..++
T Consensus        72 ~~~~-l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~  143 (461)
T 1z7x_W           72 GVHC-VLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTL------RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR  143 (461)
T ss_dssp             HHHH-HHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHT------TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHH-HHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHH------ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc
Confidence            2211 012244    7999999999 4442     22222      5789999999999886321 1112212   1347


Q ss_pred             ccEeeccccccccccc--cchhHhhcCCCccEEEEEeccCCCCceeecCcccc----ccce-eeeee---ccce-----e
Q 036801          151 LKCLDVEFVDELTTIL--SLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEV----IIRE-AYNCY---DMKY-----I  215 (388)
Q Consensus       151 L~~L~l~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~----~L~~-~~l~l---~l~~-----i  215 (388)
                      |++|++++|..-. ..  .....+..+++|+.|++..+.+   +......+..    .... +.+++   .+..     +
T Consensus       144 L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~i---~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  219 (461)
T 1z7x_W          144 LEKLQLEYCSLSA-ASCEPLASVLRAKPDFKELTVSNNDI---NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL  219 (461)
T ss_dssp             CCEEECTTSCCBG-GGHHHHHHHHHHCTTCCEEECCSSBC---HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             ceEEECCCCCCCH-HHHHHHHHHHhhCCCCCEEECcCCCc---chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence            9999999985332 11  1123567789999999955556   3322222211    1112 23333   2222     1


Q ss_pred             ccccCCCCCCccceEEecCCcccccc-----CC-CCCCCCCcCEEEEecCCCceeecc---hhhhhccCccCEEeecccc
Q 036801          216 LKHESSSIMDNLVILRVSSCHHLINL-----VP-SSTSFQNLTTLEISHCNGLKNVLT---FLIAKTLVRLREMKIESCA  286 (388)
Q Consensus       216 ~~~~~l~~l~~L~~L~l~~c~~l~~l-----~~-~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~~~L~~L~l~~c~  286 (388)
                      +  ..+..+++|++|++++|. +++.     .+ ....+++|++|++++| .+.+...   ......+++|++|+++++.
T Consensus       220 ~--~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          220 C--GIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             H--HHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             H--HHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence            1  334467888999998874 3321     11 1235788999999876 5554321   1123457889999997663


Q ss_pred             ccccccccCCCCCccccccceecccccceeecccccccce-----eccCcccccCCCcceEeccCCcccccC-----CCC
Q 036801          287 MITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRS-----FYSGYCALNFPSLERLLVDDCTNMEIF-----SRG  356 (388)
Q Consensus       287 ~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~  356 (388)
                       ++......-..      .-....++|++|++.+|. +..     ++..  +..+++|++|++++| .+...     ...
T Consensus       296 -i~~~~~~~l~~------~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~--l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~  364 (461)
T 1z7x_W          296 -LGDEGARLLCE------TLLEPGCQLESLWVKSCS-FTAACCSHFSSV--LAQNRFLLELQISNN-RLEDAGVRELCQG  364 (461)
T ss_dssp             -CHHHHHHHHHH------HHTSTTCCCCEEECTTSC-CBGGGHHHHHHH--HHHCSSCCEEECCSS-BCHHHHHHHHHHH
T ss_pred             -CchHHHHHHHH------HhccCCccceeeEcCCCC-CchHHHHHHHHH--HhhCCCccEEEccCC-ccccccHHHHHHH
Confidence             43221100000      000123689999999885 333     2222  246799999999987 34321     111


Q ss_pred             Cc-CCCCcceEEEec
Q 036801          357 EL-STPMLHKVQLNM  370 (388)
Q Consensus       357 ~~-~~~~L~~l~l~~  370 (388)
                      .. ..++|+.+++++
T Consensus       365 l~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          365 LGQPGSVLRVLWLAD  379 (461)
T ss_dssp             HTSTTCCCCEEECTT
T ss_pred             HcCCCCceEEEECCC
Confidence            11 257999999983

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.48  E-value=9.1e-14  Score=124.54  Aligned_cols=227  Identities=15%  Similarity=0.103  Sum_probs=154.0

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+..+..+++.++ .+.+...          ...+++|+.|++.++ .+..++.    +..+++|++|++++| .+..++
T Consensus        17 ~~~~l~~l~l~~~-~~~~~~~----------~~~l~~L~~L~l~~~-~i~~~~~----l~~l~~L~~L~l~~n-~l~~~~   79 (272)
T 3rfs_A           17 AFAETIKANLKKK-SVTDAVT----------QNELNSIDQIIANNS-DIKSVQG----IQYLPNVRYLALGGN-KLHDIS   79 (272)
T ss_dssp             HHHHHHHHHHTCS-CTTSEEC----------HHHHTTCCEEECTTS-CCCCCTT----GGGCTTCCEEECTTS-CCCCCG
T ss_pred             hHHHHHHHHhcCc-ccccccc----------cccccceeeeeeCCC-Ccccccc----cccCCCCcEEECCCC-CCCCch
Confidence            4556667777665 3333322          446888999999875 4655432    456899999999988 455543


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                       . +     ..+++|++|++++|.+    ..++.   ..+++|++|+++++....   .+...+..+++|+.|++..+.+
T Consensus        80 -~-l-----~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l  145 (272)
T 3rfs_A           80 -A-L-----KELTNLTYLILTGNQL----QSLPNGVFDKLTNLKELVLVENQLQS---LPDGVFDKLTNLTYLNLAHNQL  145 (272)
T ss_dssp             -G-G-----TTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECCSSCC
T ss_pred             -h-h-----cCCCCCCEEECCCCcc----CccChhHhcCCcCCCEEECCCCcCCc---cCHHHhccCCCCCEEECCCCcc
Confidence             2 2     5788999999999877    44443   457899999999876433   4444678889999999966676


Q ss_pred             CCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCC-CCCCCCcCEEEEecCCCceeecc
Q 036801          189 WLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPS-STSFQNLTTLEISHCNGLKNVLT  267 (388)
Q Consensus       189 ~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~  267 (388)
                         +.. +                    + ..+..+++|+.|++++| .++.+++. +..+++|+.|+++++ .+..++.
T Consensus       146 ---~~~-~--------------------~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  198 (272)
T 3rfs_A          146 ---QSL-P--------------------K-GVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPD  198 (272)
T ss_dssp             ---CCC-C--------------------T-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             ---Ccc-C--------------------H-HHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccCH
Confidence               322 1                    1 44567889999999988 45555544 478899999999875 5666655


Q ss_pred             hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCC
Q 036801          268 FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPS  338 (388)
Q Consensus       268 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~  338 (388)
                      . ....+++|+.|++.+++-..                   .++.|+.|+++.+.....++...  ..++.
T Consensus       199 ~-~~~~l~~L~~L~l~~N~~~~-------------------~~~~l~~l~~~~n~~~g~ip~~~--~~~~~  247 (272)
T 3rfs_A          199 G-VFDRLTSLQYIWLHDNPWDC-------------------TCPGIRYLSEWINKHSGVVRNSA--GSVAP  247 (272)
T ss_dssp             T-TTTTCTTCCEEECCSSCBCC-------------------CTTTTHHHHHHHHHTGGGBBCTT--SCBCG
T ss_pred             H-HHhCCcCCCEEEccCCCccc-------------------cCcHHHHHHHHHHhCCCcccCcc--cccCC
Confidence            3 34578899999998764211                   24678888877765455566544  44443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.47  E-value=3.4e-13  Score=123.04  Aligned_cols=57  Identities=21%  Similarity=0.355  Sum_probs=25.3

Q ss_pred             CCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801          223 IMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC  285 (388)
Q Consensus       223 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  285 (388)
                      .+++|+.|++++| .++.+++ +..+++|+.|+++++ .+.+++.   ...+++|++|+++++
T Consensus       149 ~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          149 GLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN  205 (308)
T ss_dssp             GCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS
T ss_pred             CCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCC
Confidence            3445555555544 2333322 444455555555543 3333332   224455555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.42  E-value=3.9e-13  Score=122.77  Aligned_cols=206  Identities=18%  Similarity=0.144  Sum_probs=97.8

Q ss_pred             ccccceEecccccccccccCCCccc--ccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccccc
Q 036801           66 FPRLQYLKMYDLEKLTSFSTGDVHM--LEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF  143 (388)
Q Consensus        66 l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l  143 (388)
                      +++|++|++.++ .+....+..  +  ..+++|++|++++|. +........ ......+++|++|++++|.+    ..+
T Consensus        90 ~~~L~~L~l~~n-~l~~~~~~~--~~~~~~~~L~~L~Ls~n~-i~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l----~~~  160 (310)
T 4glp_A           90 YSRLKELTLEDL-KITGTMPPL--PLEATGLALSSLRLRNVS-WATGRSWLA-ELQQWLKPGLKVLSIAQAHS----PAF  160 (310)
T ss_dssp             HSCCCEEEEESC-CCBSCCCCC--SSSCCCBCCSSCEEESCC-CSSTTSSHH-HHHTTBCSCCCEEEEECCSS----CCC
T ss_pred             cCceeEEEeeCC-Eeccchhhh--hhhccCCCCCEEEeeccc-ccchhhhhH-HHHhhhccCCCEEEeeCCCc----chh
Confidence            455667777654 344433332  2  456667777776663 321100000 00002466677777766665    233


Q ss_pred             ch---hhccCccEeecccccccccc-ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceecccc
Q 036801          144 SK---DLLCKLKCLDVEFVDELTTI-LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHE  219 (388)
Q Consensus       144 p~---~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~  219 (388)
                      +.   ..+++|++|+++++...... ..+...+..+++|++|++..+.+   +. ++...                 . .
T Consensus       161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l---~~-l~~~~-----------------~-~  218 (310)
T 4glp_A          161 SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM---ET-PTGVC-----------------A-A  218 (310)
T ss_dssp             CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC---CC-HHHHH-----------------H-H
T ss_pred             hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC---Cc-hHHHH-----------------H-H
Confidence            32   23566777777666432100 01111224566677776644455   21 11000                 0 0


Q ss_pred             CCCCCCccceEEecCCccccccCCCCCCC---CCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCC
Q 036801          220 SSSIMDNLVILRVSSCHHLINLVPSSTSF---QNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADD  296 (388)
Q Consensus       220 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~---~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~  296 (388)
                      .+..+++|++|++++|......|..+..+   ++|++|+++++ .+..++..    ..++|++|+++++ .++.+..   
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~----~~~~L~~L~Ls~N-~l~~~~~---  289 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKG----LPAKLRVLDLSSN-RLNRAPQ---  289 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSC----CCSCCSCEECCSC-CCCSCCC---
T ss_pred             HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhh----hcCCCCEEECCCC-cCCCCch---
Confidence            12345666777776664323224444333   56777777643 45555442    1256777777444 3443321   


Q ss_pred             CCCccccccceecccccceeecccc
Q 036801          297 DDDHDAAKDEVIAFSKLNELRLLNL  321 (388)
Q Consensus       297 ~~~~~~~~~~~~~~~~L~~L~l~~c  321 (388)
                                ...+++|+.|++.+.
T Consensus       290 ----------~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          290 ----------PDELPEVDNLTLDGN  304 (310)
T ss_dssp             ----------TTSCCCCSCEECSST
T ss_pred             ----------hhhCCCccEEECcCC
Confidence                      013467777777664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.39  E-value=2.6e-12  Score=113.55  Aligned_cols=174  Identities=13%  Similarity=0.137  Sum_probs=128.6

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      .+.+++++++ ..++.+ |..+     .++++.|++++| .+..++...        +..+++|++|++.++ .+..+++
T Consensus        14 ~~~~~l~~~~-~~l~~~-p~~~-----~~~l~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~   76 (251)
T 3m19_A           14 EGKKEVDCQG-KSLDSV-PSGI-----PADTEKLDLQST-GLATLSDAT--------FRGLTKLTWLNLDYN-QLQTLSA   76 (251)
T ss_dssp             GGGTEEECTT-CCCSSC-CSCC-----CTTCCEEECTTS-CCCCCCTTT--------TTTCTTCCEEECTTS-CCCCCCT
T ss_pred             CCCeEEecCC-CCcccc-CCCC-----CCCCCEEEccCC-CcCccCHhH--------hcCcccCCEEECCCC-cCCccCH
Confidence            3568888887 456665 4433     347999999998 465554431        567899999999974 6888776


Q ss_pred             CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDEL  162 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~  162 (388)
                      ..  +..+++|++|+++++ .++.++...+     ..+++|++|++++|.+    ..++.   ..+++|+.|+++++...
T Consensus        77 ~~--~~~l~~L~~L~L~~n-~l~~~~~~~~-----~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           77 GV--FDDLTELGTLGLANN-QLASLPLGVF-----DHLTQLDKLYLGGNQL----KSLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             TT--TTTCTTCCEEECTTS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             hH--hccCCcCCEEECCCC-cccccChhHh-----cccCCCCEEEcCCCcC----CCcChhHhccCCcccEEECcCCcCC
Confidence            64  677999999999988 6777766655     5889999999999887    45554   34789999999987543


Q ss_pred             cccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCc
Q 036801          163 TTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCH  236 (388)
Q Consensus       163 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~  236 (388)
                      .   ++...+..+++|+.|++..|.+   +.. +                    + ..+..+++|+.|++.+++
T Consensus       145 ~---~~~~~~~~l~~L~~L~L~~N~l---~~~-~--------------------~-~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          145 S---IPAGAFDKLTNLQTLSLSTNQL---QSV-P--------------------H-GAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             C---CCTTTTTTCTTCCEEECCSSCC---SCC-C--------------------T-TTTTTCTTCCEEECCSCC
T ss_pred             c---cCHHHcCcCcCCCEEECCCCcC---Ccc-C--------------------H-HHHhCCCCCCEEEeeCCc
Confidence            3   4555678899999999976777   322 1                    1 456677889999998874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.39  E-value=2.8e-14  Score=134.51  Aligned_cols=245  Identities=14%  Similarity=0.090  Sum_probs=143.8

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccc--cccccc-cCCC----cccccCCCccEEEeecC
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDL--EKLTSF-STGD----VHMLEFPSLKELWISRC  104 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~l~~~-~~~~----~~~~~~~~L~~L~l~~c  104 (388)
                      .+++|++|++++| .+.......    ....+..+++|++|+++++  ..+... +.+.    -.+..+++|++|++++|
T Consensus        30 ~~~~L~~L~L~~n-~i~~~~~~~----l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           30 EDDSVKEIVLSGN-TIGTEAARW----LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             HCSCCCEEECTTS-EECHHHHHH----HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             cCCCccEEECCCC-CCCHHHHHH----HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            6788888888887 333321100    0001456888888888875  222221 1110    00245788999999887


Q ss_pred             CCceE-----ecccccCCccccccCCccEEEEeecCccccc-cccch--hhc---------cCccEeecccccccccccc
Q 036801          105 PGFMV-----KFKRTTNDLTKKVFPNLEELIVDAKYITTNK-FLFSK--DLL---------CKLKCLDVEFVDELTTILS  167 (388)
Q Consensus       105 ~~l~~-----~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~-~~lp~--~~l---------~~L~~L~l~~~~~~~~~~~  167 (388)
                       .+..     ++...      ..+++|++|++++|.+.... ..++.  ..+         ++|++|+++++..-. ...
T Consensus       105 -~l~~~~~~~l~~~l------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-~~~  176 (386)
T 2ca6_A          105 -AFGPTAQEPLIDFL------SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSM  176 (386)
T ss_dssp             -CCCTTTHHHHHHHH------HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-GGH
T ss_pred             -cCCHHHHHHHHHHH------HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-HHH
Confidence             3432     22222      46788999999888763110 11111  113         789999998876432 222


Q ss_pred             ch--hHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccc----ccc
Q 036801          168 LD--DFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHL----INL  241 (388)
Q Consensus       168 ~~--~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l----~~l  241 (388)
                      +.  ..+..+++|++|++..+.+   +..   +.             ..+.+ ..+..+++|+.|++++|..-    ..+
T Consensus       177 ~~l~~~l~~~~~L~~L~L~~n~l---~~~---g~-------------~~l~~-~~l~~~~~L~~L~Ls~n~l~~~g~~~l  236 (386)
T 2ca6_A          177 KEWAKTFQSHRLLHTVKMVQNGI---RPE---GI-------------EHLLL-EGLAYCQELKVLDLQDNTFTHLGSSAL  236 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCC---CHH---HH-------------HHHHH-TTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             HHHHHHHHhCCCcCEEECcCCCC---CHh---HH-------------HHHHH-HHhhcCCCccEEECcCCCCCcHHHHHH
Confidence            21  3566788999999955566   210   00             00000 25667789999999888542    455


Q ss_pred             CCCCCCCCCcCEEEEecCCCceeecchh---hh--hccCccCEEeecccccccc-----ccccCCCCCccccccceeccc
Q 036801          242 VPSSTSFQNLTTLEISHCNGLKNVLTFL---IA--KTLVRLREMKIESCAMITE-----IVLADDDDDHDAAKDEVIAFS  311 (388)
Q Consensus       242 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~---~~--~~~~~L~~L~l~~c~~l~~-----i~~~~~~~~~~~~~~~~~~~~  311 (388)
                      +..+..+++|+.|++++|. +.+.....   ..  ..+++|++|++++|. ++.     +....           ...++
T Consensus       237 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l-----------~~~l~  303 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI-----------DEKMP  303 (386)
T ss_dssp             HHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH-----------HHHCT
T ss_pred             HHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH-----------HhcCC
Confidence            6667788899999998763 54432211   12  227889999997764 443     22110           02368


Q ss_pred             ccceeeccccc
Q 036801          312 KLNELRLLNLE  322 (388)
Q Consensus       312 ~L~~L~l~~c~  322 (388)
                      +|+.|++.+++
T Consensus       304 ~L~~L~l~~N~  314 (386)
T 2ca6_A          304 DLLFLELNGNR  314 (386)
T ss_dssp             TCCEEECTTSB
T ss_pred             CceEEEccCCc
Confidence            99999998875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.38  E-value=7.1e-13  Score=121.02  Aligned_cols=231  Identities=13%  Similarity=0.074  Sum_probs=148.7

Q ss_pred             cccEEeEecCCCCcccccc--cccccccccccceeeccccccccEeeeccccccccccc--ccccccceEeccccccccc
Q 036801            7 NLTHLTFYNCMNLRCLFSS--STVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNI--VIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~   82 (388)
                      .++.+.+.++.........  .+.   .+++|++|++++|. +.......        +  ..+++|++|+++++ .+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~---~~~~L~~L~l~~n~-l~~~~~~~--------~~~~~~~~L~~L~Ls~n-~i~~  131 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVL---AYSRLKELTLEDLK-ITGTMPPL--------PLEATGLALSSLRLRNV-SWAT  131 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHH---HHSCCCEEEEESCC-CBSCCCCC--------SSSCCCBCCSSCEEESC-CCSS
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhc---ccCceeEEEeeCCE-eccchhhh--------hhhccCCCCCEEEeecc-cccc
Confidence            4678888776432111111  012   46679999999984 43322221        3  57899999999875 4554


Q ss_pred             ccCCC--cccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccc---ccchhhccCccEeecc
Q 036801           83 FSTGD--VHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKF---LFSKDLLCKLKCLDVE  157 (388)
Q Consensus        83 ~~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~---~lp~~~l~~L~~L~l~  157 (388)
                      .....  .....+++|++|++++| .+..++...+     ..+++|++|++++|.+.....   ....+.+++|++|+++
T Consensus       132 ~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls  205 (310)
T 4glp_A          132 GRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQV-----RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR  205 (310)
T ss_dssp             TTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSC-----CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred             hhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHh-----ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence            22210  01335899999999988 5566665554     588999999999987632100   1112457899999999


Q ss_pred             ccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcc
Q 036801          158 FVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHH  237 (388)
Q Consensus       158 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~  237 (388)
                      ++..-.....+...+..+++|+.|+++.|.+   +...|..+                   ..+..+++|++|++++| .
T Consensus       206 ~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l---~~~~p~~~-------------------~~~~~~~~L~~L~Ls~N-~  262 (310)
T 4glp_A          206 NTGMETPTGVCAALAAAGVQPHSLDLSHNSL---RATVNPSA-------------------PRCMWSSALNSLNLSFA-G  262 (310)
T ss_dssp             SSCCCCHHHHHHHHHHHTCCCSSEECTTSCC---CCCCCSCC-------------------SSCCCCTTCCCEECCSS-C
T ss_pred             CCCCCchHHHHHHHHhcCCCCCEEECCCCCC---CccchhhH-------------------HhccCcCcCCEEECCCC-C
Confidence            9864320011112357889999999977777   44333211                   12223479999999988 5


Q ss_pred             ccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801          238 LINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC  285 (388)
Q Consensus       238 l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  285 (388)
                      ++.+|..+.  ++|+.|+++++ .+..++.   ...+++|+.|++++.
T Consensus       263 l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          263 LEQVPKGLP--AKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGN  304 (310)
T ss_dssp             CCSCCSCCC--SCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSST
T ss_pred             CCchhhhhc--CCCCEEECCCC-cCCCCch---hhhCCCccEEECcCC
Confidence            567776553  89999999965 6776654   247899999999765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.38  E-value=1.4e-13  Score=129.66  Aligned_cols=248  Identities=12%  Similarity=0.032  Sum_probs=134.6

Q ss_pred             cccccccceEecccccccccccCCCc--ccccCCCccEEEeecCC--CceE-ecccccC-CccccccCCccEEEEeecCc
Q 036801           63 IVIFPRLQYLKMYDLEKLTSFSTGDV--HMLEFPSLKELWISRCP--GFMV-KFKRTTN-DLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        63 ~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~c~--~l~~-~~~~~~~-~~~~~~l~~L~~L~i~~~~~  136 (388)
                      +..+++|++|+++++ .+.......+  .+..+++|++|++++|.  .+.. +|..... ......+++|++|++++|.+
T Consensus        28 l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            556788888888875 4544211100  03457888888888772  2221 1111100 00003568888888888776


Q ss_pred             ccc-ccccch--hhccCccEeeccccccccccccc---hhHhhcC---------CCccEEEEEeccCCCCce-eecCccc
Q 036801          137 TTN-KFLFSK--DLLCKLKCLDVEFVDELTTILSL---DDFLQRF---------HTLKVLQIEGYNYWLPKE-KVENGVE  200 (388)
Q Consensus       137 ~~~-~~~lp~--~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~l---------~~L~~L~l~~~~l~~~~~-~~~~~~~  200 (388)
                      ... ...++.  ..+++|++|++++|..-.  ..+   ...+..+         ++|+.|++..+.+   +. .++ .+.
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~--~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l---~~~~~~-~l~  180 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGP--QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL---ENGSMK-EWA  180 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHH--HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC---TGGGHH-HHH
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCH--HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC---CcHHHH-HHH
Confidence            321 111332  346788888888875421  111   1123333         7888888855555   21 111 000


Q ss_pred             cccceeeeeeccceeccccCCCCCCccceEEecCCcccc-----ccCCCCCCCCCcCEEEEecCCCce-----eecchhh
Q 036801          201 VIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLI-----NLVPSSTSFQNLTTLEISHCNGLK-----NVLTFLI  270 (388)
Q Consensus       201 ~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~-----~~~~~~~  270 (388)
                                        ..+..+++|+.|++++|....     -.+..+..+++|+.|++++|. +.     .++.  .
T Consensus       181 ------------------~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~--~  239 (386)
T 2ca6_A          181 ------------------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAI--A  239 (386)
T ss_dssp             ------------------HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHH--H
T ss_pred             ------------------HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHH--H
Confidence                              233456788888888874321     122256777888888888653 42     2222  3


Q ss_pred             hhccCccCEEeeccccccccccccCCCCCccccccce--ecccccceeecccccccce-----eccCcccccCCCcceEe
Q 036801          271 AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEV--IAFSKLNELRLLNLESLRS-----FYSGYCALNFPSLERLL  343 (388)
Q Consensus       271 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~~~L~~L~  343 (388)
                      +..+++|++|++++|. ++......       .....  ..+++|+.|++++|. +..     ++... ...+++|++|+
T Consensus       240 l~~~~~L~~L~L~~n~-i~~~~~~~-------l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l-~~~l~~L~~L~  309 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCL-LSARGAAA-------VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI-DEKMPDLLFLE  309 (386)
T ss_dssp             GGGCTTCCEEECTTCC-CCHHHHHH-------HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH-HHHCTTCCEEE
T ss_pred             HccCCCcCEEECCCCC-CchhhHHH-------HHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH-HhcCCCceEEE
Confidence            4567788888887664 33221000       00001  125788888888864 444     55432 24578888888


Q ss_pred             ccCCc
Q 036801          344 VDDCT  348 (388)
Q Consensus       344 l~~c~  348 (388)
                      +++|+
T Consensus       310 l~~N~  314 (386)
T 2ca6_A          310 LNGNR  314 (386)
T ss_dssp             CTTSB
T ss_pred             ccCCc
Confidence            88764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.37  E-value=5.1e-12  Score=111.65  Aligned_cols=127  Identities=13%  Similarity=0.067  Sum_probs=69.3

Q ss_pred             cccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEeccc
Q 036801           34 VRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKR  113 (388)
Q Consensus        34 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  113 (388)
                      ...++++++++ .++.+|..           ..++|+.|++.++ .+..+....  +..+++|++|+++++ .++.++..
T Consensus        14 ~~~~~l~~~~~-~l~~~p~~-----------~~~~l~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~   77 (251)
T 3m19_A           14 EGKKEVDCQGK-SLDSVPSG-----------IPADTEKLDLQST-GLATLSDAT--FRGLTKLTWLNLDYN-QLQTLSAG   77 (251)
T ss_dssp             GGGTEEECTTC-CCSSCCSC-----------CCTTCCEEECTTS-CCCCCCTTT--TTTCTTCCEEECTTS-CCCCCCTT
T ss_pred             CCCeEEecCCC-CccccCCC-----------CCCCCCEEEccCC-CcCccCHhH--hcCcccCCEEECCCC-cCCccCHh
Confidence            34566676665 45555543           1246777777763 566665543  556777777777776 55555444


Q ss_pred             ccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801          114 TTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       114 ~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                      .+     ..+++|++|++++|.+    ..++.   ..+++|++|+++++....   ++...+..+++|+.|++..|.+
T Consensus        78 ~~-----~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A           78 VF-----DDLTELGTLGLANNQL----ASLPLGVFDHLTQLDKLYLGGNQLKS---LPSGVFDRLTKLKELRLNTNQL  143 (251)
T ss_dssp             TT-----TTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC
T ss_pred             Hh-----ccCCcCCEEECCCCcc----cccChhHhcccCCCCEEEcCCCcCCC---cChhHhccCCcccEEECcCCcC
Confidence            33     4666777777776665    23332   234555555555543221   2333344555555555544444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.30  E-value=5.3e-13  Score=124.65  Aligned_cols=234  Identities=12%  Similarity=0.024  Sum_probs=117.1

Q ss_pred             EeEecCCCCcccccccccccccccccceeeccccccccEeeeccccccccccccccc-ccceEecccccccccccCCCcc
Q 036801           11 LTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFP-RLQYLKMYDLEKLTSFSTGDVH   89 (388)
Q Consensus        11 L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~   89 (388)
                      +.++.+ .++...|..+.   ..++|++|++++|. +.........    ..+..++ +|++|+++++ .+.......  
T Consensus         3 ~~ls~n-~~~~~~~~~~~---~~~~L~~L~Ls~n~-l~~~~~~~l~----~~l~~~~~~L~~L~Ls~N-~l~~~~~~~--   70 (362)
T 3goz_A            3 YKLTLH-PGSNPVEEFTS---IPHGVTSLDLSLNN-LYSISTVELI----QAFANTPASVTSLNLSGN-SLGFKNSDE--   70 (362)
T ss_dssp             EECCCC-TTCCHHHHHHT---SCTTCCEEECTTSC-GGGSCHHHHH----HHHHTCCTTCCEEECCSS-CGGGSCHHH--
T ss_pred             cccccc-cchHHHHHHHh---CCCCceEEEccCCC-CChHHHHHHH----HHHHhCCCceeEEECcCC-CCCHHHHHH--
Confidence            455553 34433344333   44558888888773 5443321000    0144566 7888888764 455543321  


Q ss_pred             ccc-----CCCccEEEeecCCCceEecccccCCcccccc-CCccEEEEeecCccccccccchhh--------ccCccEee
Q 036801           90 MLE-----FPSLKELWISRCPGFMVKFKRTTNDLTKKVF-PNLEELIVDAKYITTNKFLFSKDL--------LCKLKCLD  155 (388)
Q Consensus        90 ~~~-----~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~~~~~~lp~~~--------l~~L~~L~  155 (388)
                      +..     +++|++|++++| .+.......+... ...+ ++|++|++++|.+.    ..+...        .++|++|+
T Consensus        71 l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~----~~~~~~l~~~l~~~~~~L~~L~  144 (362)
T 3goz_A           71 LVQILAAIPANVTSLNLSGN-FLSYKSSDELVKT-LAAIPFTITVLDLGWNDFS----SKSSSEFKQAFSNLPASITSLN  144 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHH-HHTSCTTCCEEECCSSCGG----GSCHHHHHHHHTTSCTTCCEEE
T ss_pred             HHHHHhccCCCccEEECcCC-cCChHHHHHHHHH-HHhCCCCccEEECcCCcCC----cHHHHHHHHHHHhCCCceeEEE
Confidence            222     277888888777 3443222211000 0123 67888888777762    222211        24778888


Q ss_pred             ccccccccccc--cchhHhhcCC-CccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCC-CccceEE
Q 036801          156 VEFVDELTTIL--SLDDFLQRFH-TLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIM-DNLVILR  231 (388)
Q Consensus       156 l~~~~~~~~~~--~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l-~~L~~L~  231 (388)
                      ++++..-. ..  .....+...+ +|++|++..+.+   +...+..+.                  ..+... ++|++|+
T Consensus       145 Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~l---~~~~~~~l~------------------~~l~~~~~~L~~L~  202 (362)
T 3goz_A          145 LRGNDLGI-KSSDELIQILAAIPANVNSLNLRGNNL---ASKNCAELA------------------KFLASIPASVTSLD  202 (362)
T ss_dssp             CTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCG---GGSCHHHHH------------------HHHHTSCTTCCEEE
T ss_pred             ccCCcCCH-HHHHHHHHHHhcCCccccEeeecCCCC---chhhHHHHH------------------HHHHhCCCCCCEEE
Confidence            77764321 11  0011234444 788887744555   222111111                  222233 4777777


Q ss_pred             ecCCccccc-----cCCCCCC-CCCcCEEEEecCCCceeecch---hhhhccCccCEEeecccc
Q 036801          232 VSSCHHLIN-----LVPSSTS-FQNLTTLEISHCNGLKNVLTF---LIAKTLVRLREMKIESCA  286 (388)
Q Consensus       232 l~~c~~l~~-----l~~~~~~-~~~L~~L~l~~c~~l~~~~~~---~~~~~~~~L~~L~l~~c~  286 (388)
                      +++|. ++.     ++..+.. .++|+.|+++++ .+.+.+..   .+...+++|++|++++|.
T Consensus       203 Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          203 LSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            77764 333     3333333 347777777764 45544331   122455677777776653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.27  E-value=1.2e-11  Score=105.00  Aligned_cols=151  Identities=17%  Similarity=0.129  Sum_probs=109.9

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      .+++|++|+++++ .++.+ | .+.   .+++|++|++++| .+..++.          +..+++|++|++.++ .+...
T Consensus        42 ~l~~L~~L~l~~n-~i~~l-~-~l~---~l~~L~~L~l~~n-~~~~~~~----------l~~l~~L~~L~l~~n-~l~~~  103 (197)
T 4ezg_A           42 QMNSLTYITLANI-NVTDL-T-GIE---YAHNIKDLTINNI-HATNYNP----------ISGLSNLERLRIMGK-DVTSD  103 (197)
T ss_dssp             HHHTCCEEEEESS-CCSCC-T-TGG---GCTTCSEEEEESC-CCSCCGG----------GTTCTTCCEEEEECT-TCBGG
T ss_pred             hcCCccEEeccCC-CccCh-H-HHh---cCCCCCEEEccCC-CCCcchh----------hhcCCCCCEEEeECC-ccCcc
Confidence            4678999999985 45554 4 467   8999999999998 5554431          667999999999984 67664


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccccc-chhhccCccEeeccccccc
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF-SKDLLCKLKCLDVEFVDEL  162 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l-p~~~l~~L~~L~l~~~~~~  162 (388)
                      ....  +..+++|++|++++| .+.......+     ..+++|++|++++|..+   ..+ +...+++|++|+++++...
T Consensus       104 ~~~~--l~~l~~L~~L~Ls~n-~i~~~~~~~l-----~~l~~L~~L~L~~n~~i---~~~~~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          104 KIPN--LSGLTSLTLLDISHS-AHDDSILTKI-----NTLPKVNSIDLSYNGAI---TDIMPLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             GSCC--CTTCTTCCEEECCSS-BCBGGGHHHH-----TTCSSCCEEECCSCTBC---CCCGGGGGCSSCCEEECTTBCCC
T ss_pred             cChh--hcCCCCCCEEEecCC-ccCcHhHHHH-----hhCCCCCEEEccCCCCc---cccHhhcCCCCCCEEECCCCCCc
Confidence            4443  667999999999998 4443222222     57899999999998732   333 3456899999999998643


Q ss_pred             cccccchhHhhcCCCccEEEEEeccC
Q 036801          163 TTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       163 ~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                      .   ++  .+..+++|+.|++..|.+
T Consensus       173 ~---~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          173 D---YR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             C---CT--TGGGCSSCCEEEECBC--
T ss_pred             C---hH--HhccCCCCCEEEeeCccc
Confidence            3   32  567899999999966665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.27  E-value=1.6e-11  Score=110.98  Aligned_cols=146  Identities=16%  Similarity=0.209  Sum_probs=83.4

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      .+++|++|++++| .++.+  +.++   .+++|++|++++| .+..++.          +..+++|++|++.++ .+..+
T Consensus        44 ~l~~L~~L~l~~~-~i~~~--~~~~---~l~~L~~L~L~~n-~l~~~~~----------l~~l~~L~~L~l~~n-~l~~~  105 (291)
T 1h6t_A           44 ELNSIDQIIANNS-DIKSV--QGIQ---YLPNVTKLFLNGN-KLTDIKP----------LANLKNLGWLFLDEN-KVKDL  105 (291)
T ss_dssp             HHHTCCEEECTTS-CCCCC--TTGG---GCTTCCEEECCSS-CCCCCGG----------GTTCTTCCEEECCSS-CCCCG
T ss_pred             hcCcccEEEccCC-CcccC--hhHh---cCCCCCEEEccCC-ccCCCcc----------cccCCCCCEEECCCC-cCCCC
Confidence            3556777777765 34443  2355   6777777777776 3444322          345677777777653 45544


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc-hhhccCccEeeccccccc
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS-KDLLCKLKCLDVEFVDEL  162 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~  162 (388)
                      +.    +..+++|++|++++| .+..++.  +     ..+++|+.|++++|.+.    .++ ...+++|+.|+++++...
T Consensus       106 ~~----l~~l~~L~~L~L~~n-~i~~~~~--l-----~~l~~L~~L~l~~n~l~----~~~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          106 SS----LKDLKKLKSLSLEHN-GISDING--L-----VHLPQLESLYLGNNKIT----DITVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             GG----GTTCTTCCEEECTTS-CCCCCGG--G-----GGCTTCCEEECCSSCCC----CCGGGGGCTTCSEEECCSSCCC
T ss_pred             hh----hccCCCCCEEECCCC-cCCCChh--h-----cCCCCCCEEEccCCcCC----cchhhccCCCCCEEEccCCccc
Confidence            32    345677777777766 4444321  1     46677777777776652    222 234667777777766432


Q ss_pred             cccccchhHhhcCCCccEEEEEeccC
Q 036801          163 TTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       163 ~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                      .   .+.  +..+++|+.|++..|.+
T Consensus       170 ~---~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          170 D---IVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             C---CGG--GTTCTTCCEEECCSSCC
T ss_pred             c---chh--hcCCCccCEEECCCCcC
Confidence            2   221  55667777777754555

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.26  E-value=3.4e-11  Score=108.84  Aligned_cols=167  Identities=17%  Similarity=0.173  Sum_probs=99.5

Q ss_pred             ccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccccc
Q 036801           64 VIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF  143 (388)
Q Consensus        64 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l  143 (388)
                      ..+++|+.|++.++ .+..++ +   +..+++|++|++++| .++.++.  +     ..+++|+.|++++|.+    ..+
T Consensus        43 ~~l~~L~~L~l~~~-~i~~~~-~---~~~l~~L~~L~L~~n-~l~~~~~--l-----~~l~~L~~L~l~~n~l----~~~  105 (291)
T 1h6t_A           43 NELNSIDQIIANNS-DIKSVQ-G---IQYLPNVTKLFLNGN-KLTDIKP--L-----ANLKNLGWLFLDENKV----KDL  105 (291)
T ss_dssp             HHHHTCCEEECTTS-CCCCCT-T---GGGCTTCCEEECCSS-CCCCCGG--G-----TTCTTCCEEECCSSCC----CCG
T ss_pred             hhcCcccEEEccCC-CcccCh-h---HhcCCCCCEEEccCC-ccCCCcc--c-----ccCCCCCEEECCCCcC----CCC
Confidence            35666777777654 454442 1   345677777777766 4444443  2     4667777777777665    222


Q ss_pred             c-hhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCC
Q 036801          144 S-KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSS  222 (388)
Q Consensus       144 p-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~  222 (388)
                      + ...+++|++|+++++....   ++  .+..+++|+.|++..+.+   +..                        ..+.
T Consensus       106 ~~l~~l~~L~~L~L~~n~i~~---~~--~l~~l~~L~~L~l~~n~l---~~~------------------------~~l~  153 (291)
T 1h6t_A          106 SSLKDLKKLKSLSLEHNGISD---IN--GLVHLPQLESLYLGNNKI---TDI------------------------TVLS  153 (291)
T ss_dssp             GGGTTCTTCCEEECTTSCCCC---CG--GGGGCTTCCEEECCSSCC---CCC------------------------GGGG
T ss_pred             hhhccCCCCCEEECCCCcCCC---Ch--hhcCCCCCCEEEccCCcC---Ccc------------------------hhhc
Confidence            2 2446677777777764322   21  456677777777755555   221                        2334


Q ss_pred             CCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801          223 IMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC  285 (388)
Q Consensus       223 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  285 (388)
                      .+++|+.|++++| .++.+++ +..+++|+.|+++++ .+.+++.   ...+++|+.|++.++
T Consensus       154 ~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          154 RLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             GCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEE
T ss_pred             cCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCC
Confidence            5677777777776 4444444 666777777777754 5555543   346777777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.25  E-value=1.5e-11  Score=122.12  Aligned_cols=57  Identities=18%  Similarity=0.259  Sum_probs=25.3

Q ss_pred             CCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801          223 IMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC  285 (388)
Q Consensus       223 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  285 (388)
                      .+++|+.|+|++| .+..+++ +..+++|+.|++++| .+.+++.   +..+++|+.|++.++
T Consensus       151 ~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          151 RLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQ  207 (605)
T ss_dssp             SCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCSE
T ss_pred             ccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC-CCCCChH---HccCCCCCEEEccCC
Confidence            3445555555544 2333322 444555555555543 3333321   234455555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.25  E-value=1.4e-11  Score=105.59  Aligned_cols=143  Identities=19%  Similarity=0.191  Sum_probs=93.2

Q ss_pred             cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801            9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV   88 (388)
Q Consensus         9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   88 (388)
                      +.++.++ .+++.+ |..     -.++|++|+++++ .+..++...        +..+++|++|++.++ ++..++... 
T Consensus        10 ~~v~c~~-~~l~~~-p~~-----~~~~l~~L~l~~n-~l~~~~~~~--------~~~l~~L~~L~l~~n-~l~~~~~~~-   71 (208)
T 2o6s_A           10 TTVECYS-QGRTSV-PTG-----IPAQTTYLDLETN-SLKSLPNGV--------FDELTSLTQLYLGGN-KLQSLPNGV-   71 (208)
T ss_dssp             TEEECCS-SCCSSC-CSC-----CCTTCSEEECCSS-CCCCCCTTT--------TTTCTTCSEEECCSS-CCCCCCTTT-
T ss_pred             CEEEecC-CCccCC-CCC-----CCCCCcEEEcCCC-ccCcCChhh--------hcccccCcEEECCCC-ccCccChhh-
Confidence            4566665 344444 432     3557999999998 566554431        457899999999874 687777654 


Q ss_pred             ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeecccccccccc
Q 036801           89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTI  165 (388)
Q Consensus        89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~  165 (388)
                       +..+++|++|++++| .++.++...+     ..+++|++|++++|.+    ..++.   ..+++|++|+++++....  
T Consensus        72 -~~~l~~L~~L~Ls~n-~l~~~~~~~~-----~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~l~~N~l~~--  138 (208)
T 2o6s_A           72 -FNKLTSLTYLNLSTN-QLQSLPNGVF-----DKLTQLKELALNTNQL----QSLPDGVFDKLTQLKDLRLYQNQLKS--  138 (208)
T ss_dssp             -TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCSC--
T ss_pred             -cCCCCCcCEEECCCC-cCCccCHhHh-----cCccCCCEEEcCCCcC----cccCHhHhccCCcCCEEECCCCccce--
Confidence             567899999999988 6666666554     5788999999988876    33333   235566666666543221  


Q ss_pred             ccchhHhhcCCCccEEEE
Q 036801          166 LSLDDFLQRFHTLKVLQI  183 (388)
Q Consensus       166 ~~~~~~~~~l~~L~~L~l  183 (388)
                       ++...+..+++|+.|++
T Consensus       139 -~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A          139 -VPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             -CCTTTTTTCTTCCEEEC
T ss_pred             -eCHHHhccCCCccEEEe
Confidence             33334455566666666

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.22  E-value=1.7e-11  Score=109.06  Aligned_cols=166  Identities=17%  Similarity=0.164  Sum_probs=108.0

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+.+++.+++.++ .+.+++.          +..+++|++|++.++ .+..++ .   +..+++|++|++++| .++.++
T Consensus        17 ~l~~l~~l~l~~~-~i~~~~~----------~~~l~~L~~L~l~~n-~i~~l~-~---l~~l~~L~~L~L~~N-~i~~~~   79 (263)
T 1xeu_A           17 GLANAVKQNLGKQ-SVTDLVS----------QKELSGVQNFNGDNS-NIQSLA-G---MQFFTNLKELHLSHN-QISDLS   79 (263)
T ss_dssp             HHHHHHHHHHTCS-CTTSEEC----------HHHHTTCSEEECTTS-CCCCCT-T---GGGCTTCCEEECCSS-CCCCCG
T ss_pred             HHHHHHHHHhcCC-Ccccccc----------hhhcCcCcEEECcCC-Ccccch-H---HhhCCCCCEEECCCC-ccCCCh
Confidence            5667778888776 4555542          456888888888875 566665 2   456888888888887 566665


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCC
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLP  191 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  191 (388)
                      .  +     ..+++|+.|++++|.+    ..++....++|++|+++++....   .+  .+..+++|+.|+++.|.+   
T Consensus        80 ~--l-----~~l~~L~~L~L~~N~l----~~l~~~~~~~L~~L~L~~N~l~~---~~--~l~~l~~L~~L~Ls~N~i---  140 (263)
T 1xeu_A           80 P--L-----KDLTKLEELSVNRNRL----KNLNGIPSACLSRLFLDNNELRD---TD--SLIHLKNLEILSIRNNKL---  140 (263)
T ss_dssp             G--G-----TTCSSCCEEECCSSCC----SCCTTCCCSSCCEEECCSSCCSB---SG--GGTTCTTCCEEECTTSCC---
T ss_pred             h--h-----ccCCCCCEEECCCCcc----CCcCccccCcccEEEccCCccCC---Ch--hhcCcccccEEECCCCcC---
Confidence            5  2     5788888888888776    33333222777788877764322   22  466777788777755555   


Q ss_pred             ceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecC
Q 036801          192 KEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHC  259 (388)
Q Consensus       192 ~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c  259 (388)
                      +..                        ..+..+++|+.|++++| .++.+ ..+..+++|+.|+++++
T Consensus       141 ~~~------------------------~~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          141 KSI------------------------VMLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CBC------------------------GGGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEE
T ss_pred             CCC------------------------hHHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCC
Confidence            221                        23345677777777776 33433 44566677777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.21  E-value=3.6e-11  Score=119.34  Aligned_cols=166  Identities=18%  Similarity=0.177  Sum_probs=80.6

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+++|+.|++++| .+..++.          +..+++|+.|+|.++ .+..+++    +..+++|+.|++++| .+..++
T Consensus        41 ~L~~L~~L~l~~n-~i~~l~~----------l~~l~~L~~L~Ls~N-~l~~~~~----l~~l~~L~~L~Ls~N-~l~~l~  103 (605)
T 1m9s_A           41 ELNSIDQIIANNS-DIKSVQG----------IQYLPNVTKLFLNGN-KLTDIKP----LTNLKNLGWLFLDEN-KIKDLS  103 (605)
T ss_dssp             HHTTCCCCBCTTC-CCCCCTT----------GGGCTTCCEEECTTS-CCCCCGG----GGGCTTCCEEECCSS-CCCCCT
T ss_pred             cCCCCCEEECcCC-CCCCChH----------HccCCCCCEEEeeCC-CCCCChh----hccCCCCCEEECcCC-CCCCCh
Confidence            4555666666555 2333321          345556666666543 3444332    224566666666555 343332


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccc-hhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCC
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS-KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWL  190 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  190 (388)
                       ..      ..+++|+.|++++|.+.    .++ ...+++|+.|+++++....   +  ..+..+++|+.|+++.+.+  
T Consensus       104 -~l------~~l~~L~~L~Ls~N~l~----~l~~l~~l~~L~~L~Ls~N~l~~---l--~~l~~l~~L~~L~Ls~N~l--  165 (605)
T 1m9s_A          104 -SL------KDLKKLKSLSLEHNGIS----DINGLVHLPQLESLYLGNNKITD---I--TVLSRLTKLDTLSLEDNQI--  165 (605)
T ss_dssp             -TS------TTCTTCCEEECTTSCCC----CCGGGGGCTTCSEEECCSSCCCC---C--GGGGSCTTCSEEECCSSCC--
T ss_pred             -hh------ccCCCCCEEEecCCCCC----CCccccCCCccCEEECCCCccCC---c--hhhcccCCCCEEECcCCcC--
Confidence             11      35556666666655542    222 2345566666666553222   1  2445566666666644444  


Q ss_pred             CceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecC
Q 036801          191 PKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHC  259 (388)
Q Consensus       191 ~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c  259 (388)
                       ...                        ..+..+++|+.|+|++| .+..+ +.+..+++|+.|++++|
T Consensus       166 -~~~------------------------~~l~~l~~L~~L~Ls~N-~i~~l-~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          166 -SDI------------------------VPLAGLTKLQNLYLSKN-HISDL-RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             -CCC------------------------GGGTTCTTCCEEECCSS-CCCBC-GGGTTCTTCSEEECCSE
T ss_pred             -CCc------------------------hhhccCCCCCEEECcCC-CCCCC-hHHccCCCCCEEEccCC
Confidence             211                        11334555666666555 33333 23455556666666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.20  E-value=1.2e-12  Score=122.14  Aligned_cols=245  Identities=10%  Similarity=0.001  Sum_probs=144.9

Q ss_pred             CCCcccEEeEecCCCCccccc----cccccccccc-ccceeeccccccccEeeeccccccccccccc-ccccceEecccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFS----SSTVSNSSFV-RLQYIEIEKCHVLEELIVMDNQEEDRNNIVI-FPRLQYLKMYDL   77 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p----~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~   77 (388)
                      ..++|++|++++|. ++...+    ..+.   +++ +|++|++++| .+..........    -+.. +++|++|+++++
T Consensus        20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~---~~~~~L~~L~Ls~N-~l~~~~~~~l~~----~l~~~~~~L~~L~Ls~n   90 (362)
T 3goz_A           20 IPHGVTSLDLSLNN-LYSISTVELIQAFA---NTPASVTSLNLSGN-SLGFKNSDELVQ----ILAAIPANVTSLNLSGN   90 (362)
T ss_dssp             SCTTCCEEECTTSC-GGGSCHHHHHHHHH---TCCTTCCEEECCSS-CGGGSCHHHHHH----HHHTSCTTCCEEECCSS
T ss_pred             CCCCceEEEccCCC-CChHHHHHHHHHHH---hCCCceeEEECcCC-CCCHHHHHHHHH----HHhccCCCccEEECcCC
Confidence            34569999999965 676655    4455   687 8999999998 455432211000    0112 389999999986


Q ss_pred             cccccccCCCc--ccccC-CCccEEEeecCCCceEecccccCCccccc-cCCccEEEEeecCcccc-ccccchh--hcc-
Q 036801           78 EKLTSFSTGDV--HMLEF-PSLKELWISRCPGFMVKFKRTTNDLTKKV-FPNLEELIVDAKYITTN-KFLFSKD--LLC-  149 (388)
Q Consensus        78 ~~l~~~~~~~~--~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-l~~L~~L~i~~~~~~~~-~~~lp~~--~l~-  149 (388)
                       .+.......+  .+..+ ++|++|++++| .+...+...+...+ .. .++|++|++++|.+... ...++..  .++ 
T Consensus        91 -~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~  167 (362)
T 3goz_A           91 -FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAF-SNLPASITSLNLRGNDLGIKSSDELIQILAAIPA  167 (362)
T ss_dssp             -CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHH-TTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred             -cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHH-HhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence             4665443210  02234 89999999999 45544332210000 12 36999999999887321 1122222  233 


Q ss_pred             CccEeeccccccccccccch---hHhhcC-CCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCC-C
Q 036801          150 KLKCLDVEFVDELTTILSLD---DFLQRF-HTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSI-M  224 (388)
Q Consensus       150 ~L~~L~l~~~~~~~~~~~~~---~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~-l  224 (388)
                      +|++|++++|..-.  ..+.   ..+... ++|+.|+++.|.+   +..-...+.                  ..+.. .
T Consensus       168 ~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~i---~~~~~~~l~------------------~~l~~~~  224 (362)
T 3goz_A          168 NVNSLNLRGNNLAS--KNCAELAKFLASIPASVTSLDLSANLL---GLKSYAELA------------------YIFSSIP  224 (362)
T ss_dssp             TCCEEECTTSCGGG--SCHHHHHHHHHTSCTTCCEEECTTSCG---GGSCHHHHH------------------HHHHHSC
T ss_pred             cccEeeecCCCCch--hhHHHHHHHHHhCCCCCCEEECCCCCC---ChhHHHHHH------------------HHHhcCC
Confidence            99999999986432  2221   234455 5999999966666   321110010                  22223 3


Q ss_pred             CccceEEecCCcccccc-----CCCCCCCCCcCEEEEecCCCceeecch---h---hhhccCccCEEeeccc
Q 036801          225 DNLVILRVSSCHHLINL-----VPSSTSFQNLTTLEISHCNGLKNVLTF---L---IAKTLVRLREMKIESC  285 (388)
Q Consensus       225 ~~L~~L~l~~c~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~~~~~~---~---~~~~~~~L~~L~l~~c  285 (388)
                      ++|+.|++++|. ++..     ......+++|+.|++++|. +..+...   .   ....+++|+.|+++++
T Consensus       225 ~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          225 NHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             TTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred             CCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence            699999999984 4332     2334678899999999873 2222111   1   1234567788888655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.19  E-value=2.3e-10  Score=97.05  Aligned_cols=36  Identities=31%  Similarity=0.409  Sum_probs=15.3

Q ss_pred             CCCccceEEecCCccccccCCCCCCCCCcCEEEEec
Q 036801          223 IMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISH  258 (388)
Q Consensus       223 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~  258 (388)
                      .+++|+.|++++|......+..+..+++|++|++++
T Consensus        86 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            344444444444422222333344444455555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.16  E-value=1.8e-10  Score=113.17  Aligned_cols=113  Identities=16%  Similarity=0.150  Sum_probs=55.3

Q ss_pred             ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801           35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT  114 (388)
Q Consensus        35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  114 (388)
                      +|+.|++++| ++..++..         +  +++|++|+++++ ++..++ .     .+++|++|++++| .++.+|. .
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~---------l--~~~L~~L~Ls~N-~l~~ip-~-----~l~~L~~L~Ls~N-~l~~ip~-l  118 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDN---------L--PPQITVLEITQN-ALISLP-E-----LPASLEYLDACDN-RLSTLPE-L  118 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSC---------C--CTTCSEEECCSS-CCSCCC-C-----CCTTCCEEECCSS-CCSCCCC-C
T ss_pred             CccEEEeCCC-CCCccCHh---------H--cCCCCEEECcCC-CCcccc-c-----ccCCCCEEEccCC-CCCCcch-h
Confidence            5556666555 34443332         1  355666666543 455444 2     2556666666555 4443433 1


Q ss_pred             cCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801          115 TNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                            ..  +|+.|++++|.+    ..+|. .+++|+.|+++++....   +|.    .+++|+.|++..|.+
T Consensus       119 ------~~--~L~~L~Ls~N~l----~~lp~-~l~~L~~L~Ls~N~l~~---lp~----~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          119 ------PA--SLKHLDVDNNQL----TMLPE-LPALLEYINADNNQLTM---LPE----LPTSLEVLSVRNNQL  172 (571)
T ss_dssp             ------CT--TCCEEECCSSCC----SCCCC-CCTTCCEEECCSSCCSC---CCC----CCTTCCEEECCSSCC
T ss_pred             ------hc--CCCEEECCCCcC----CCCCC-cCccccEEeCCCCccCc---CCC----cCCCcCEEECCCCCC
Confidence                  11  566666665554    23444 45566666665543221   222    345566666644444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.15  E-value=2.1e-10  Score=112.76  Aligned_cols=183  Identities=17%  Similarity=0.190  Sum_probs=131.3

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      .+|+.|+++++ .++.+ |..+     +++|++|++++| .+..++ .           .+++|+.|++.++ ++..++.
T Consensus        59 ~~L~~L~Ls~n-~L~~l-p~~l-----~~~L~~L~Ls~N-~l~~ip-~-----------~l~~L~~L~Ls~N-~l~~ip~  117 (571)
T 3cvr_A           59 NQFSELQLNRL-NLSSL-PDNL-----PPQITVLEITQN-ALISLP-E-----------LPASLEYLDACDN-RLSTLPE  117 (571)
T ss_dssp             TTCSEEECCSS-CCSCC-CSCC-----CTTCSEEECCSS-CCSCCC-C-----------CCTTCCEEECCSS-CCSCCCC
T ss_pred             CCccEEEeCCC-CCCcc-CHhH-----cCCCCEEECcCC-CCcccc-c-----------ccCCCCEEEccCC-CCCCcch
Confidence            38999999986 46665 4432     467999999998 566665 2           3789999999985 6877665


Q ss_pred             CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTI  165 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~  165 (388)
                       .     ..+|++|++++| .++.+|.         .+++|+.|++++|.+    ..+|. .+++|+.|+++++..-.  
T Consensus       118 -l-----~~~L~~L~Ls~N-~l~~lp~---------~l~~L~~L~Ls~N~l----~~lp~-~l~~L~~L~Ls~N~L~~--  174 (571)
T 3cvr_A          118 -L-----PASLKHLDVDNN-QLTMLPE---------LPALLEYINADNNQL----TMLPE-LPTSLEVLSVRNNQLTF--  174 (571)
T ss_dssp             -C-----CTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSCC----SCCCC-CCTTCCEEECCSSCCSC--
T ss_pred             -h-----hcCCCEEECCCC-cCCCCCC---------cCccccEEeCCCCcc----CcCCC-cCCCcCEEECCCCCCCC--
Confidence             3     339999999998 5654433         578999999999987    45666 67899999999986332  


Q ss_pred             ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801          166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS  245 (388)
Q Consensus       166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~  245 (388)
                       +|.  +.  ++|+.|+++.|.+   + .+|. +..+|                 ....+.|+.|++++| .++.+|..+
T Consensus       175 -lp~--l~--~~L~~L~Ls~N~L---~-~lp~-~~~~L-----------------~~~~~~L~~L~Ls~N-~l~~lp~~l  226 (571)
T 3cvr_A          175 -LPE--LP--ESLEALDVSTNLL---E-SLPA-VPVRN-----------------HHSEETEIFFRCREN-RITHIPENI  226 (571)
T ss_dssp             -CCC--CC--TTCCEEECCSSCC---S-SCCC-CC-------------------------CCEEEECCSS-CCCCCCGGG
T ss_pred             -cch--hh--CCCCEEECcCCCC---C-chhh-HHHhh-----------------hcccccceEEecCCC-cceecCHHH
Confidence             444  33  8999999977788   3 3442 11000                 011233499999887 667788877


Q ss_pred             CCCCCcCEEEEecCC
Q 036801          246 TSFQNLTTLEISHCN  260 (388)
Q Consensus       246 ~~~~~L~~L~l~~c~  260 (388)
                      ..+++|+.|++++++
T Consensus       227 ~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          227 LSLDPTCTIILEDNP  241 (571)
T ss_dssp             GGSCTTEEEECCSSS
T ss_pred             hcCCCCCEEEeeCCc
Confidence            778999999998754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.14  E-value=1.7e-10  Score=107.47  Aligned_cols=63  Identities=19%  Similarity=0.162  Sum_probs=27.7

Q ss_pred             cccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                      .+++|+.|++.+ +.+..++...  +..+++|++|+++++ .++.++...+     ..+++|+.|++++|.+
T Consensus        62 ~l~~L~~L~L~~-N~i~~i~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~i  124 (361)
T 2xot_A           62 RLTNLHSLLLSH-NHLNFISSEA--FVPVPNLRYLDLSSN-HLHTLDEFLF-----SDLQALEVLLLYNNHI  124 (361)
T ss_dssp             CCTTCCEEECCS-SCCCEECTTT--TTTCTTCCEEECCSS-CCCEECTTTT-----TTCTTCCEEECCSSCC
T ss_pred             cccccCEEECCC-CcCCccChhh--ccCCCCCCEEECCCC-cCCcCCHHHh-----CCCcCCCEEECCCCcc
Confidence            344455555543 2344444332  334444555555444 3444433333     3444455555544443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.13  E-value=2.4e-10  Score=97.73  Aligned_cols=13  Identities=8%  Similarity=0.102  Sum_probs=6.5

Q ss_pred             CCccEEEEeecCc
Q 036801          124 PNLEELIVDAKYI  136 (388)
Q Consensus       124 ~~L~~L~i~~~~~  136 (388)
                      ++|++|+++++.+
T Consensus        28 ~~l~~L~l~~n~l   40 (208)
T 2o6s_A           28 AQTTYLDLETNSL   40 (208)
T ss_dssp             TTCSEEECCSSCC
T ss_pred             CCCcEEEcCCCcc
Confidence            3455555555444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.12  E-value=2.9e-10  Score=98.23  Aligned_cols=148  Identities=11%  Similarity=0.104  Sum_probs=104.8

Q ss_pred             cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801            9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV   88 (388)
Q Consensus         9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   88 (388)
                      +.+++++ ++++.+ |..+     .++|++|+++++ .+..++...        +..+++|++|++.++ .+..+.+.. 
T Consensus        14 ~~v~c~~-~~l~~i-P~~l-----~~~l~~L~l~~n-~i~~i~~~~--------~~~l~~L~~L~Ls~N-~i~~~~~~~-   75 (220)
T 2v9t_B           14 NIVDCRG-KGLTEI-PTNL-----PETITEIRLEQN-TIKVIPPGA--------FSPYKKLRRIDLSNN-QISELAPDA-   75 (220)
T ss_dssp             TEEECTT-SCCSSC-CSSC-----CTTCCEEECCSS-CCCEECTTS--------STTCTTCCEEECCSS-CCCEECTTT-
T ss_pred             CEEEcCC-CCcCcC-CCcc-----CcCCCEEECCCC-cCCCcCHhH--------hhCCCCCCEEECCCC-cCCCcCHHH-
Confidence            4566665 345555 4322     346889999888 566665532        557888999999874 677776654 


Q ss_pred             ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeecccccccccc
Q 036801           89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTI  165 (388)
Q Consensus        89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~  165 (388)
                       +..+++|++|+++++ .++.++...+     ..+++|+.|++++|.+    ..++.   ..+++|+.|+++++....  
T Consensus        76 -~~~l~~L~~L~Ls~N-~l~~l~~~~f-----~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~L~~N~l~~--  142 (220)
T 2v9t_B           76 -FQGLRSLNSLVLYGN-KITELPKSLF-----EGLFSLQLLLLNANKI----NCLRVDAFQDLHNLNLLSLYDNKLQT--  142 (220)
T ss_dssp             -TTTCSSCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCSC--
T ss_pred             -hhCCcCCCEEECCCC-cCCccCHhHc-----cCCCCCCEEECCCCCC----CEeCHHHcCCCCCCCEEECCCCcCCE--
Confidence             667889999999887 6777776655     5788999999998877    34433   346789999998876433  


Q ss_pred             ccchhHhhcCCCccEEEEEeccC
Q 036801          166 LSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       166 ~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                       ++...+..+++|+.|++..|.+
T Consensus       143 -~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          143 -IAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             -CCTTTTTTCTTCCEEECCSSCE
T ss_pred             -ECHHHHhCCCCCCEEEeCCCCc
Confidence             4444677889999999965665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.11  E-value=6.4e-10  Score=96.08  Aligned_cols=61  Identities=10%  Similarity=0.181  Sum_probs=31.6

Q ss_pred             cccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           67 PRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        67 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                      ++|+.|++.+ +.+..++...  +..+++|++|+++++ .++.+.+..+     ..+++|++|++++|.+
T Consensus        32 ~~l~~L~l~~-n~i~~i~~~~--~~~l~~L~~L~Ls~N-~i~~~~~~~~-----~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           32 ETITEIRLEQ-NTIKVIPPGA--FSPYKKLRRIDLSNN-QISELAPDAF-----QGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TTCCEEECCS-SCCCEECTTS--STTCTTCCEEECCSS-CCCEECTTTT-----TTCSSCCEEECCSSCC
T ss_pred             cCCCEEECCC-CcCCCcCHhH--hhCCCCCCEEECCCC-cCCCcCHHHh-----hCCcCCCEEECCCCcC
Confidence            4566666654 3455555443  445566666666655 4444433333     3455555555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.10  E-value=4.7e-10  Score=104.54  Aligned_cols=61  Identities=15%  Similarity=0.144  Sum_probs=34.9

Q ss_pred             cccceEecccccccccccCCCcccc-cCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           67 PRLQYLKMYDLEKLTSFSTGDVHML-EFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        67 ~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                      +.++.|++++ +++..++...  +. .+++|++|+++++ .++.++...+     ..+++|++|++++|.+
T Consensus        39 ~~l~~L~Ls~-N~l~~l~~~~--~~~~l~~L~~L~L~~N-~i~~i~~~~~-----~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           39 SYTALLDLSH-NNLSRLRAEW--TPTRLTNLHSLLLSHN-HLNFISSEAF-----VPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             TTCSEEECCS-SCCCEECTTS--SSSCCTTCCEEECCSS-CCCEECTTTT-----TTCTTCCEEECCSSCC
T ss_pred             CCCCEEECCC-CCCCccChhh--hhhcccccCEEECCCC-cCCccChhhc-----cCCCCCCEEECCCCcC
Confidence            3466666665 3566555543  33 5666666666665 5555554443     4566666666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.10  E-value=2.8e-10  Score=99.01  Aligned_cols=149  Identities=13%  Similarity=0.072  Sum_probs=103.3

Q ss_pred             ccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCC
Q 036801            8 LTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGD   87 (388)
Q Consensus         8 L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   87 (388)
                      -+.++.++ +.++.+ |..     -.++|++|++++| .+..+....        +..+++|++|++.++ .+..++...
T Consensus        21 ~~~v~c~~-~~l~~i-p~~-----~~~~L~~L~Ls~n-~i~~~~~~~--------~~~l~~L~~L~L~~N-~l~~i~~~~   83 (229)
T 3e6j_A           21 GTTVDCRS-KRHASV-PAG-----IPTNAQILYLHDN-QITKLEPGV--------FDSLINLKELYLGSN-QLGALPVGV   83 (229)
T ss_dssp             TTEEECTT-SCCSSC-CSC-----CCTTCSEEECCSS-CCCCCCTTT--------TTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred             CCEeEccC-CCcCcc-CCC-----CCCCCCEEEcCCC-ccCccCHHH--------hhCccCCcEEECCCC-CCCCcChhh
Confidence            34566655 445555 432     3467888899887 455543321        557888899988874 677776654


Q ss_pred             cccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeecccccccccc
Q 036801           88 VHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFVDELTTI  165 (388)
Q Consensus        88 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~~~~~~~  165 (388)
                        +..+++|+.|+++++ .++.++...+     ..+++|+.|++++|.+    ..+|.  ..+++|+.|+++++....  
T Consensus        84 --~~~l~~L~~L~Ls~N-~l~~l~~~~~-----~~l~~L~~L~Ls~N~l----~~lp~~~~~l~~L~~L~L~~N~l~~--  149 (229)
T 3e6j_A           84 --FDSLTQLTVLDLGTN-QLTVLPSAVF-----DRLVHLKELFMCCNKL----TELPRGIERLTHLTHLALDQNQLKS--  149 (229)
T ss_dssp             --TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CSCCTTGGGCTTCSEEECCSSCCCC--
T ss_pred             --cccCCCcCEEECCCC-cCCccChhHh-----CcchhhCeEeccCCcc----cccCcccccCCCCCEEECCCCcCCc--
Confidence              567888999999887 6776766655     5788899999988877    45554  357889999998875332  


Q ss_pred             ccchhHhhcCCCccEEEEEeccC
Q 036801          166 LSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       166 ~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                       ++...+..+++|+.|++..|.+
T Consensus       150 -~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          150 -IPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             -CCTTTTTTCTTCCEEECTTSCB
T ss_pred             -cCHHHHhCCCCCCEEEeeCCCc
Confidence             4445677888999999855555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.10  E-value=4.9e-10  Score=96.78  Aligned_cols=107  Identities=11%  Similarity=0.088  Sum_probs=53.7

Q ss_pred             cCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccc
Q 036801           92 EFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSL  168 (388)
Q Consensus        92 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~  168 (388)
                      .+++|++|+++++ .++.++...+     ..+++|++|++++|.+    ..++.   ..+++|++|+++++....   ++
T Consensus        55 ~l~~L~~L~L~~N-~i~~i~~~~~-----~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~  121 (220)
T 2v70_A           55 KLPQLRKINFSNN-KITDIEEGAF-----EGASGVNEILLTSNRL----ENVQHKMFKGLESLKTLMLRSNRITC---VG  121 (220)
T ss_dssp             GCTTCCEEECCSS-CCCEECTTTT-----TTCTTCCEEECCSSCC----CCCCGGGGTTCSSCCEEECTTSCCCC---BC
T ss_pred             cCCCCCEEECCCC-cCCEECHHHh-----CCCCCCCEEECCCCcc----CccCHhHhcCCcCCCEEECCCCcCCe---EC
Confidence            3444444444444 3333333222     3444455555544444    22222   224455555555543222   22


Q ss_pred             hhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCc
Q 036801          169 DDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCH  236 (388)
Q Consensus       169 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~  236 (388)
                      ...+..+++|+.|++..|.+   +...+                      ..+..+++|+.|++.+++
T Consensus       122 ~~~~~~l~~L~~L~L~~N~l---~~~~~----------------------~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          122 NDSFIGLSSVRLLSLYDNQI---TTVAP----------------------GAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTSSTTCTTCSEEECTTSCC---CCBCT----------------------TTTTTCTTCCEEECCSCC
T ss_pred             HhHcCCCccCCEEECCCCcC---CEECH----------------------HHhcCCCCCCEEEecCcC
Confidence            23556677888888855666   33222                      455566777777777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.10  E-value=7.7e-10  Score=95.55  Aligned_cols=145  Identities=12%  Similarity=0.096  Sum_probs=99.6

Q ss_pred             ceEecccccccccccCCCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCccccccccch---
Q 036801           70 QYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---  145 (388)
Q Consensus        70 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---  145 (388)
                      +.+++.+ +.+..+|...     .+.+++|+++++ .++.++. ..+     ..+++|+.|++++|.+    ..++.   
T Consensus        14 ~~l~~s~-n~l~~iP~~~-----~~~~~~L~L~~N-~l~~~~~~~~~-----~~l~~L~~L~L~~N~i----~~i~~~~~   77 (220)
T 2v70_A           14 TTVDCSN-QKLNKIPEHI-----PQYTAELRLNNN-EFTVLEATGIF-----KKLPQLRKINFSNNKI----TDIEEGAF   77 (220)
T ss_dssp             TEEECCS-SCCSSCCSCC-----CTTCSEEECCSS-CCCEECCCCCG-----GGCTTCCEEECCSSCC----CEECTTTT
T ss_pred             CEeEeCC-CCcccCccCC-----CCCCCEEEcCCC-cCCccCchhhh-----ccCCCCCEEECCCCcC----CEECHHHh
Confidence            4677765 4677776553     667899999988 6766643 334     6899999999999887    33333   


Q ss_pred             hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCC
Q 036801          146 DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMD  225 (388)
Q Consensus       146 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~  225 (388)
                      ..+++|++|+++++....   ++...+..+++|++|++..|.+   +...+                      ..+..++
T Consensus        78 ~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l---~~~~~----------------------~~~~~l~  129 (220)
T 2v70_A           78 EGASGVNEILLTSNRLEN---VQHKMFKGLESLKTLMLRSNRI---TCVGN----------------------DSFIGLS  129 (220)
T ss_dssp             TTCTTCCEEECCSSCCCC---CCGGGGTTCSSCCEEECTTSCC---CCBCT----------------------TSSTTCT
T ss_pred             CCCCCCCEEECCCCccCc---cCHhHhcCCcCCCEEECCCCcC---CeECH----------------------hHcCCCc
Confidence            457788888888875433   4444677788888888865666   33222                      4556678


Q ss_pred             ccceEEecCCcccccc-CCCCCCCCCcCEEEEecC
Q 036801          226 NLVILRVSSCHHLINL-VPSSTSFQNLTTLEISHC  259 (388)
Q Consensus       226 ~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c  259 (388)
                      +|+.|+++++ .++.+ +..+..+++|+.|+++++
T Consensus       130 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          130 SVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             TCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             cCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence            8888888877 34444 455677778888888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.02  E-value=8.9e-12  Score=122.88  Aligned_cols=121  Identities=17%  Similarity=0.144  Sum_probs=71.1

Q ss_pred             CccEEEEeecCccccccccc-hhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCcccccc
Q 036801          125 NLEELIVDAKYITTNKFLFS-KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVII  203 (388)
Q Consensus       125 ~L~~L~i~~~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L  203 (388)
                      .|+.|++++|.+    ..+| .+.+++|+.|+++++....   +|. .+..+++|+.|+++.|.+   +. +        
T Consensus       442 ~L~~L~Ls~n~l----~~lp~~~~l~~L~~L~Ls~N~l~~---lp~-~~~~l~~L~~L~Ls~N~l---~~-l--------  501 (567)
T 1dce_A          442 DVRVLHLAHKDL----TVLCHLEQLLLVTHLDLSHNRLRA---LPP-ALAALRCLEVLQASDNAL---EN-V--------  501 (567)
T ss_dssp             TCSEEECTTSCC----SSCCCGGGGTTCCEEECCSSCCCC---CCG-GGGGCTTCCEEECCSSCC---CC-C--------
T ss_pred             CceEEEecCCCC----CCCcCccccccCcEeecCcccccc---cch-hhhcCCCCCEEECCCCCC---CC-C--------
Confidence            355666666554    2222 2345666666666654322   444 566777777777765666   22 1        


Q ss_pred             ceeeeeeccceeccccCCCCCCccceEEecCCcccccc--CCCCCCCCCcCEEEEecCCCceeecch--hhhhccCccCE
Q 036801          204 REAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINL--VPSSTSFQNLTTLEISHCNGLKNVLTF--LIAKTLVRLRE  279 (388)
Q Consensus       204 ~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~~~~L~~  279 (388)
                                     ..++.+++|+.|++++| .++.+  |..+..+++|+.|+++++ .+...+..  .+...+|+|+.
T Consensus       502 ---------------p~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          502 ---------------DGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             ---------------GGGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSE
T ss_pred             ---------------cccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCc
Confidence                           23445677788888776 44444  566677778888888764 45444331  12345778887


Q ss_pred             Eee
Q 036801          280 MKI  282 (388)
Q Consensus       280 L~l  282 (388)
                      |++
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.02  E-value=1e-09  Score=100.82  Aligned_cols=67  Identities=15%  Similarity=0.075  Sum_probs=46.9

Q ss_pred             cCCCCCCccceEEecCCccccccCC-CCCCCCCcC-EEEEecCCCceeecchhhhhccCccCEEeeccccccccc
Q 036801          219 ESSSIMDNLVILRVSSCHHLINLVP-SSTSFQNLT-TLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEI  291 (388)
Q Consensus       219 ~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i  291 (388)
                      ..+..+++|+++++.++  ++.++. .+..+++|+ .+.+.+  .+..+... ++..+++|+++++.. +.++.+
T Consensus       244 ~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~-aF~~c~~L~~l~l~~-n~i~~I  312 (329)
T 3sb4_A          244 FTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG-AFMGCDNLRYVLATG-DKITTL  312 (329)
T ss_dssp             TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTT-TTTTCTTEEEEEECS-SCCCEE
T ss_pred             hhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchh-hhhCCccCCEEEeCC-CccCcc
Confidence            66777888888888774  666654 456788888 888875  67777655 345778888888843 345545

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.01  E-value=5.9e-10  Score=91.88  Aligned_cols=107  Identities=21%  Similarity=0.235  Sum_probs=51.1

Q ss_pred             ccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccccc
Q 036801           64 VIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF  143 (388)
Q Consensus        64 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l  143 (388)
                      ..+++|++|++.++ .+..+  ..  +..+++|++|++++| .+....+..+     ..+++|+.|++++|.+    ..+
T Consensus        46 ~~l~~L~~L~l~~n-~l~~~--~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~-----~~l~~L~~L~Ls~N~l----~~~  110 (168)
T 2ell_A           46 AEFVNLEFLSLINV-GLISV--SN--LPKLPKLKKLELSEN-RIFGGLDMLA-----EKLPNLTHLNLSGNKL----KDI  110 (168)
T ss_dssp             GGGGGCCEEEEESS-CCCCC--SS--CCCCSSCCEEEEESC-CCCSCCCHHH-----HHCTTCCEEECBSSSC----CSS
T ss_pred             HhCCCCCEEeCcCC-CCCCh--hh--hccCCCCCEEECcCC-cCchHHHHHH-----hhCCCCCEEeccCCcc----Ccc
Confidence            34555555555543 34443  11  344555556655555 2332111111     2355566666655554    222


Q ss_pred             c----hhhccCccEeeccccccccccccch---hHhhcCCCccEEEEEeccC
Q 036801          144 S----KDLLCKLKCLDVEFVDELTTILSLD---DFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       144 p----~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~l  188 (388)
                      +    ...+++|+.|+++++....   .+.   ..+..+++|+.|++..+..
T Consensus       111 ~~~~~l~~l~~L~~L~l~~N~l~~---~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          111 STLEPLKKLECLKSLDLFNCEVTN---LNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             GGGGGGSSCSCCCEEECCSSGGGT---STTHHHHHHTTCSSCCEETTEETTS
T ss_pred             hhHHHHhcCCCCCEEEeeCCcCcc---hHHHHHHHHHhCccCcEecCCCCCh
Confidence            1    1235566666666554322   222   3556677777777633333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.01  E-value=2e-09  Score=93.48  Aligned_cols=143  Identities=15%  Similarity=0.114  Sum_probs=67.0

Q ss_pred             ceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---h
Q 036801           70 QYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---D  146 (388)
Q Consensus        70 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~  146 (388)
                      +.++..+ ..+..++...     .++|++|+++++ .++.+++..+     ..+++|++|++++|.+    ..++.   .
T Consensus        22 ~~v~c~~-~~l~~ip~~~-----~~~L~~L~Ls~n-~i~~~~~~~~-----~~l~~L~~L~L~~N~l----~~i~~~~~~   85 (229)
T 3e6j_A           22 TTVDCRS-KRHASVPAGI-----PTNAQILYLHDN-QITKLEPGVF-----DSLINLKELYLGSNQL----GALPVGVFD   85 (229)
T ss_dssp             TEEECTT-SCCSSCCSCC-----CTTCSEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CCCCTTTTT
T ss_pred             CEeEccC-CCcCccCCCC-----CCCCCEEEcCCC-ccCccCHHHh-----hCccCCcEEECCCCCC----CCcChhhcc
Confidence            3444433 2344444442     455666666555 3444433322     3455555555555554    22222   2


Q ss_pred             hccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCc
Q 036801          147 LLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDN  226 (388)
Q Consensus       147 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~  226 (388)
                      .+++|+.|+++++....   ++...+..+++|+.|++..|.+   + .+|                      ..+..+++
T Consensus        86 ~l~~L~~L~Ls~N~l~~---l~~~~~~~l~~L~~L~Ls~N~l---~-~lp----------------------~~~~~l~~  136 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLTV---LPSAVFDRLVHLKELFMCCNKL---T-ELP----------------------RGIERLTH  136 (229)
T ss_dssp             TCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC---C-SCC----------------------TTGGGCTT
T ss_pred             cCCCcCEEECCCCcCCc---cChhHhCcchhhCeEeccCCcc---c-ccC----------------------cccccCCC
Confidence            23445555554442211   2333445556666666644555   2 222                      23334556


Q ss_pred             cceEEecCCccccccCC-CCCCCCCcCEEEEec
Q 036801          227 LVILRVSSCHHLINLVP-SSTSFQNLTTLEISH  258 (388)
Q Consensus       227 L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~  258 (388)
                      |+.|+++++ .++.++. .+..+++|+.|++++
T Consensus       137 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          137 LTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CSEEECCSS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCEEECCCC-cCCccCHHHHhCCCCCCEEEeeC
Confidence            666666555 3344432 234555666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.01  E-value=1.1e-09  Score=97.39  Aligned_cols=146  Identities=16%  Similarity=0.200  Sum_probs=106.2

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      ..+++|++|++++| .++.+ + .++   .+++|++|++++| .+..++.          +..+++|+.|+++++ ++..
T Consensus        38 ~~l~~L~~L~l~~n-~i~~l-~-~l~---~l~~L~~L~L~~N-~i~~~~~----------l~~l~~L~~L~L~~N-~l~~   99 (263)
T 1xeu_A           38 KELSGVQNFNGDNS-NIQSL-A-GMQ---FFTNLKELHLSHN-QISDLSP----------LKDLTKLEELSVNRN-RLKN   99 (263)
T ss_dssp             HHHTTCSEEECTTS-CCCCC-T-TGG---GCTTCCEEECCSS-CCCCCGG----------GTTCSSCCEEECCSS-CCSC
T ss_pred             hhcCcCcEEECcCC-Ccccc-h-HHh---hCCCCCEEECCCC-ccCCChh----------hccCCCCCEEECCCC-ccCC
Confidence            35678899999886 46655 3 566   7899999999988 4555433          457889999999874 6777


Q ss_pred             ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccccc-chhhccCccEeecccccc
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF-SKDLLCKLKCLDVEFVDE  161 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l-p~~~l~~L~~L~l~~~~~  161 (388)
                      ++...     .++|+.|++++| .++.++.  +     ..+++|+.|++++|.+.    .+ +...+++|+.|+++++..
T Consensus       100 l~~~~-----~~~L~~L~L~~N-~l~~~~~--l-----~~l~~L~~L~Ls~N~i~----~~~~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A          100 LNGIP-----SACLSRLFLDNN-ELRDTDS--L-----IHLKNLEILSIRNNKLK----SIVMLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             CTTCC-----CSSCCEEECCSS-CCSBSGG--G-----TTCTTCCEEECTTSCCC----BCGGGGGCTTCCEEECTTSCC
T ss_pred             cCccc-----cCcccEEEccCC-ccCCChh--h-----cCcccccEEECCCCcCC----CChHHccCCCCCEEECCCCcC
Confidence            66543     288999999888 6665542  2     57889999999988873    33 345688999999988764


Q ss_pred             ccccccchhHhhcCCCccEEEEEeccC
Q 036801          162 LTTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       162 ~~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                      ..   .  ..+..+++|+.|++..+.+
T Consensus       163 ~~---~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          163 TN---T--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             CB---C--TTSTTCCCCCEEEEEEEEE
T ss_pred             cc---h--HHhccCCCCCEEeCCCCcc
Confidence            43   2  3567888999999955555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.96  E-value=6.4e-10  Score=89.72  Aligned_cols=33  Identities=24%  Similarity=0.205  Sum_probs=15.7

Q ss_pred             ccCccEeeccccccccccccch---hHhhcCCCccEEEE
Q 036801          148 LCKLKCLDVEFVDELTTILSLD---DFLQRFHTLKVLQI  183 (388)
Q Consensus       148 l~~L~~L~l~~~~~~~~~~~~~---~~~~~l~~L~~L~l  183 (388)
                      +++|++|+++++....   .+.   ..+..+++|+.|++
T Consensus       112 l~~L~~L~l~~N~l~~---~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A          112 LENLKSLDLFNCEVTN---LNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CTTCCEEECTTCGGGG---STTHHHHHHHHCTTCCEETT
T ss_pred             CCCCCEEeCcCCcccc---hHHHHHHHHHHCCCcccccC
Confidence            4555555555543221   221   34555666665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.91  E-value=3.6e-09  Score=87.06  Aligned_cols=132  Identities=17%  Similarity=0.156  Sum_probs=99.0

Q ss_pred             CCCcccEEeEecCCCCc-ccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLR-CLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~-~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      ..++|++|++++|. ++ ...|..+.   .+++|++|++++|. +..+ ..         +..+++|++|++.++ .+..
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~~~~---~l~~L~~L~l~~n~-l~~~-~~---------~~~l~~L~~L~Ls~N-~l~~   85 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEGLTA---EFVNLEFLSLINVG-LISV-SN---------LPKLPKLKKLELSEN-RIFG   85 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSSCCG---GGGGCCEEEEESSC-CCCC-SS---------CCCCSSCCEEEEESC-CCCS
T ss_pred             CcccCCEEECCCCC-CChhhHHHHHH---hCCCCCEEeCcCCC-CCCh-hh---------hccCCCCCEEECcCC-cCch
Confidence            45789999999976 44 22466667   89999999999984 6665 22         678999999999975 5766


Q ss_pred             ccCCCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCccccccccch------hhccCccEee
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK------DLLCKLKCLD  155 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~------~~l~~L~~L~  155 (388)
                      ..+..  ...+++|++|++++| .++.++. ..+     ..+++|+.|++++|.+    ..++.      ..+++|++|+
T Consensus        86 ~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~l-----~~l~~L~~L~l~~N~l----~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A           86 GLDML--AEKLPNLTHLNLSGN-KLKDISTLEPL-----KKLECLKSLDLFNCEV----TNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             CCCHH--HHHCTTCCEEECBSS-SCCSSGGGGGG-----SSCSCCCEEECCSSGG----GTSTTHHHHHHTTCSSCCEET
T ss_pred             HHHHH--HhhCCCCCEEeccCC-ccCcchhHHHH-----hcCCCCCEEEeeCCcC----cchHHHHHHHHHhCccCcEec
Confidence            44432  456999999999998 6766553 223     5789999999999887    33333      4588999999


Q ss_pred             cccccccc
Q 036801          156 VEFVDELT  163 (388)
Q Consensus       156 l~~~~~~~  163 (388)
                      ++++...+
T Consensus       154 l~~n~~~~  161 (168)
T 2ell_A          154 GYDREDQE  161 (168)
T ss_dssp             TEETTSCB
T ss_pred             CCCCChhh
Confidence            99986543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.90  E-value=3.9e-09  Score=87.63  Aligned_cols=39  Identities=21%  Similarity=0.340  Sum_probs=17.7

Q ss_pred             cccccccceEecccccccccccCCCcccccCCCccEEEeecC
Q 036801           63 IVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC  104 (388)
Q Consensus        63 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  104 (388)
                      +..+++|++|+++++ .+..+++..  +..+++|++|++++|
T Consensus        60 l~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N   98 (176)
T 1a9n_A           60 FPLLRRLKTLLVNNN-RICRIGEGL--DQALPDLTELILTNN   98 (176)
T ss_dssp             CCCCSSCCEEECCSS-CCCEECSCH--HHHCTTCCEEECCSC
T ss_pred             cccCCCCCEEECCCC-cccccCcch--hhcCCCCCEEECCCC
Confidence            334455555555442 344443331  234455555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=1.4e-08  Score=93.29  Aligned_cols=99  Identities=13%  Similarity=0.004  Sum_probs=64.7

Q ss_pred             CCCccEEEEEeccCCCCceeecCccccccce-eeeee--ccceeccccCCCCCCccc-eEEecCCccccccCC-CCCCCC
Q 036801          175 FHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY--DMKYILKHESSSIMDNLV-ILRVSSCHHLINLVP-SSTSFQ  249 (388)
Q Consensus       175 l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l--~l~~i~~~~~l~~l~~L~-~L~l~~c~~l~~l~~-~~~~~~  249 (388)
                      +++|+.+++..+++    ..++.+.+.++.+ .++.+  +++.|+. ..+..+++|+ .+.+.+  .++.++. .+..++
T Consensus       225 ~~~L~~l~L~~n~i----~~I~~~aF~~~~~L~~l~l~~ni~~I~~-~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~  297 (329)
T 3sb4_A          225 MPNLVSLDISKTNA----TTIPDFTFAQKKYLLKIKLPHNLKTIGQ-RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCD  297 (329)
T ss_dssp             CTTCCEEECTTBCC----CEECTTTTTTCTTCCEEECCTTCCEECT-TTTTTCTTCCEEEEECT--TCCEECTTTTTTCT
T ss_pred             cCCCeEEECCCCCc----ceecHhhhhCCCCCCEEECCcccceehH-HHhhCChhccEEEEEcc--cceEEchhhhhCCc
Confidence            55566666533344    3344444444433 34444  4556666 7888899999 999987  5666653 567899


Q ss_pred             CcCEEEEecCCCceeecchhhhhccCccCEEee
Q 036801          250 NLTTLEISHCNGLKNVLTFLIAKTLVRLREMKI  282 (388)
Q Consensus       250 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l  282 (388)
                      +|+.+.+.+ +.+..++... +..+++|+++..
T Consensus       298 ~L~~l~l~~-n~i~~I~~~a-F~~~~~L~~ly~  328 (329)
T 3sb4_A          298 NLRYVLATG-DKITTLGDEL-FGNGVPSKLIYK  328 (329)
T ss_dssp             TEEEEEECS-SCCCEECTTT-TCTTCCCCEEEC
T ss_pred             cCCEEEeCC-CccCccchhh-hcCCcchhhhcc
Confidence            999999864 5777777653 456788888753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.83  E-value=4.5e-09  Score=84.63  Aligned_cols=126  Identities=17%  Similarity=0.113  Sum_probs=92.0

Q ss_pred             CCCcccEEeEecCCCCc-ccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLR-CLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~-~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      ..++|++|++++|. ++ ...|..++   .+++|++|++++| .+..+ ..         +..+++|++|+++++ .+..
T Consensus        15 ~~~~l~~L~l~~n~-l~~~~~~~~~~---~l~~L~~L~l~~n-~l~~~-~~---------~~~l~~L~~L~Ls~n-~i~~   78 (149)
T 2je0_A           15 TPSDVKELVLDNSR-SNEGKLEGLTD---EFEELEFLSTINV-GLTSI-AN---------LPKLNKLKKLELSDN-RVSG   78 (149)
T ss_dssp             CGGGCSEEECTTCB-CBTTBCCSCCT---TCTTCCEEECTTS-CCCCC-TT---------CCCCTTCCEEECCSS-CCCS
T ss_pred             CCccCeEEEccCCc-CChhHHHHHHh---hcCCCcEEECcCC-CCCCc-hh---------hhcCCCCCEEECCCC-cccc
Confidence            45789999999975 44 23466667   8999999999998 56655 22         667999999999875 5666


Q ss_pred             ccCCCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCccccccccc------hhhccCccEee
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLFS------KDLLCKLKCLD  155 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp------~~~l~~L~~L~  155 (388)
                      ..+..  ...+++|++|++++| .++.++. ..+     ..+++|++|++++|.+    ...+      ...+++|+.|+
T Consensus        79 ~~~~~--~~~l~~L~~L~ls~N-~i~~~~~~~~~-----~~l~~L~~L~l~~N~l----~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A           79 GLEVL--AEKCPNLTHLNLSGN-KIKDLSTIEPL-----KKLENLKSLDLFNCEV----TNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             CTHHH--HHHCTTCCEEECTTS-CCCSHHHHGGG-----GGCTTCCEEECTTCGG----GGSTTHHHHHHHHCTTCCEET
T ss_pred             hHHHH--hhhCCCCCEEECCCC-cCCChHHHHHH-----hhCCCCCEEeCcCCcc----cchHHHHHHHHHHCCCccccc
Confidence            33332  456899999999998 5665531 222     5889999999999876    3333      34578999998


Q ss_pred             cc
Q 036801          156 VE  157 (388)
Q Consensus       156 l~  157 (388)
                      ++
T Consensus       147 l~  148 (149)
T 2je0_A          147 GY  148 (149)
T ss_dssp             TB
T ss_pred             CC
Confidence            76

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.82  E-value=1.6e-07  Score=88.51  Aligned_cols=236  Identities=8%  Similarity=0.050  Sum_probs=156.4

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      +|+.+.+..  .++.+...+|.   ++ +|+.+.+..  .++.+....        +..|++|+.+++.+ +++..++..
T Consensus       136 ~L~~i~l~~--~i~~I~~~aF~---~~-~L~~i~lp~--~l~~I~~~a--------F~~c~~L~~l~l~~-n~l~~I~~~  198 (401)
T 4fdw_A          136 QIAKVVLNE--GLKSIGDMAFF---NS-TVQEIVFPS--TLEQLKEDI--------FYYCYNLKKADLSK-TKITKLPAS  198 (401)
T ss_dssp             CCSEEECCT--TCCEECTTTTT---TC-CCCEEECCT--TCCEECSST--------TTTCTTCCEEECTT-SCCSEECTT
T ss_pred             CccEEEeCC--CccEECHHhcC---CC-CceEEEeCC--CccEehHHH--------hhCcccCCeeecCC-CcceEechh
Confidence            688888764  37777666666   53 688888876  577765542        55788999999975 467777766


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhc--cCccEeeccccccccc
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLL--CKLKCLDVEFVDELTT  164 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l--~~L~~L~l~~~~~~~~  164 (388)
                      .  +. +.+|+.+.+..  .++.+....+     ..+++|+.+++..+-     ..++...+  .+|+.+.+...  +. 
T Consensus       199 a--F~-~~~L~~l~lp~--~l~~I~~~aF-----~~~~~L~~l~l~~~l-----~~I~~~aF~~~~L~~i~lp~~--i~-  260 (401)
T 4fdw_A          199 T--FV-YAGIEEVLLPV--TLKEIGSQAF-----LKTSQLKTIEIPENV-----STIGQEAFRESGITTVKLPNG--VT-  260 (401)
T ss_dssp             T--TT-TCCCSEEECCT--TCCEECTTTT-----TTCTTCCCEECCTTC-----CEECTTTTTTCCCSEEEEETT--CC-
T ss_pred             h--Ee-ecccCEEEeCC--chheehhhHh-----hCCCCCCEEecCCCc-----cCccccccccCCccEEEeCCC--cc-
Confidence            4  33 68899988863  4777777776     678889988887631     22333322  57888888432  22 


Q ss_pred             cccchhHhhcCCCccEEEEEeccCC-CCceeecCccccccce-eeeee--ccceeccccCCCCCCccceEEecCCccccc
Q 036801          165 ILSLDDFLQRFHTLKVLQIEGYNYW-LPKEKVENGVEVIIRE-AYNCY--DMKYILKHESSSIMDNLVILRVSSCHHLIN  240 (388)
Q Consensus       165 ~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~~L~~-~~l~l--~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~  240 (388)
                       .++...+.++++|+.+.+..+... .+...++.+.+.+..+ ..+.+  .++.|.. ..+..+++|+.+.+...  ++.
T Consensus       261 -~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~-~aF~~c~~L~~l~lp~~--l~~  336 (401)
T 4fdw_A          261 -NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQ-GLLGGNRKVTQLTIPAN--VTQ  336 (401)
T ss_dssp             -EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECT-TTTTTCCSCCEEEECTT--CCE
T ss_pred             -EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhh-hhhcCCCCccEEEECcc--ccE
Confidence             244457788899999988444330 0012456666655554 45666  6777777 88889999999999653  555


Q ss_pred             cCC-CCCCCCCcCEEEEecCCCceeecchhhhhcc-CccCEEeecc
Q 036801          241 LVP-SSTSFQNLTTLEISHCNGLKNVLTFLIAKTL-VRLREMKIES  284 (388)
Q Consensus       241 l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~  284 (388)
                      +.. .+..+ +|+.+.+.+. .+..+....+ ..+ .+++.|.+..
T Consensus       337 I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F-~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          337 INFSAFNNT-GIKEVKVEGT-TPPQVFEKVW-YGFPDDITVIRVPA  379 (401)
T ss_dssp             ECTTSSSSS-CCCEEEECCS-SCCBCCCSSC-CCSCTTCCEEEECG
T ss_pred             EcHHhCCCC-CCCEEEEcCC-CCcccccccc-cCCCCCccEEEeCH
Confidence            544 45667 9999999864 4444444322 234 4678888854

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.82  E-value=1.1e-08  Score=84.97  Aligned_cols=128  Identities=13%  Similarity=0.133  Sum_probs=96.8

Q ss_pred             cccccceeeccccccccEeeecccccccccccccc-cccceEecccccccccccCCCcccccCCCccEEEeecCCCceEe
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIF-PRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVK  110 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  110 (388)
                      .+++|++|++++| .+..++.          +..+ ++|++|+++++ .+..+  ..  +..+++|++|++++| .++.+
T Consensus        17 ~~~~L~~L~l~~n-~l~~i~~----------~~~~~~~L~~L~Ls~N-~l~~~--~~--l~~l~~L~~L~Ls~N-~l~~~   79 (176)
T 1a9n_A           17 NAVRDRELDLRGY-KIPVIEN----------LGATLDQFDAIDFSDN-EIRKL--DG--FPLLRRLKTLLVNNN-RICRI   79 (176)
T ss_dssp             CTTSCEEEECTTS-CCCSCCC----------GGGGTTCCSEEECCSS-CCCEE--CC--CCCCSSCCEEECCSS-CCCEE
T ss_pred             CcCCceEEEeeCC-CCchhHH----------hhhcCCCCCEEECCCC-CCCcc--cc--cccCCCCCEEECCCC-ccccc
Confidence            6888999999998 5665532          3334 49999999975 67776  22  667999999999998 67777


Q ss_pred             cccccCCccccccCCccEEEEeecCccccccccc----hhhccCccEeeccccccccccccchh---HhhcCCCccEEEE
Q 036801          111 FKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS----KDLLCKLKCLDVEFVDELTTILSLDD---FLQRFHTLKVLQI  183 (388)
Q Consensus       111 ~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp----~~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~l~~L~~L~l  183 (388)
                      ++..+     ..+++|++|++++|.+    ..+|    ...+++|+.|+++++....   .+..   .+..+++|+.|++
T Consensus        80 ~~~~~-----~~l~~L~~L~L~~N~i----~~~~~~~~l~~l~~L~~L~l~~N~i~~---~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           80 GEGLD-----QALPDLTELILTNNSL----VELGDLDPLASLKSLTYLCILRNPVTN---KKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             CSCHH-----HHCTTCCEEECCSCCC----CCGGGGGGGGGCTTCCEEECCSSGGGG---STTHHHHHHHHCTTCSEETT
T ss_pred             Ccchh-----hcCCCCCEEECCCCcC----CcchhhHhhhcCCCCCEEEecCCCCCC---cHhHHHHHHHHCCccceeCC
Confidence            76554     5899999999999987    3444    3458899999999986543   3432   5788999999999


Q ss_pred             EeccC
Q 036801          184 EGYNY  188 (388)
Q Consensus       184 ~~~~l  188 (388)
                      ..+..
T Consensus       148 ~~n~~  152 (176)
T 1a9n_A          148 QKVKL  152 (176)
T ss_dssp             EECCH
T ss_pred             CcCCH
Confidence            44443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.80  E-value=2.5e-08  Score=83.98  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=67.6

Q ss_pred             cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801            9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV   88 (388)
Q Consensus         9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   88 (388)
                      ++++++++ .++.+ |..+.     .+|++|+++++ .+..++....       +..+++|++|++++ +.+..+.+.. 
T Consensus        11 ~~l~~s~~-~l~~i-p~~~~-----~~l~~L~l~~n-~i~~~~~~~~-------~~~l~~L~~L~Ls~-N~l~~~~~~~-   73 (192)
T 1w8a_A           11 TTVDCTGR-GLKEI-PRDIP-----LHTTELLLNDN-ELGRISSDGL-------FGRLPHLVKLELKR-NQLTGIEPNA-   73 (192)
T ss_dssp             TEEECTTS-CCSSC-CSCCC-----TTCSEEECCSC-CCCSBCCSCS-------GGGCTTCCEEECCS-SCCCCBCTTT-
T ss_pred             CEEEcCCC-CcCcC-ccCCC-----CCCCEEECCCC-cCCccCCccc-------cccCCCCCEEECCC-CCCCCcCHhH-
Confidence            66777764 45554 44333     26888888887 4555543211       45677888888876 3677665554 


Q ss_pred             ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                       +..+++|++|+++++ .++.++...+     ..+++|++|++++|.+
T Consensus        74 -~~~l~~L~~L~Ls~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~l  114 (192)
T 1w8a_A           74 -FEGASHIQELQLGEN-KIKEISNKMF-----LGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             -TTTCTTCCEEECCSC-CCCEECSSSS-----TTCTTCCEEECCSSCC
T ss_pred             -cCCcccCCEEECCCC-cCCccCHHHh-----cCCCCCCEEECCCCcC
Confidence             566788888888777 5666665544     4677777777777765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.78  E-value=9.6e-07  Score=83.12  Aligned_cols=259  Identities=8%  Similarity=0.044  Sum_probs=146.0

Q ss_pred             ccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecc
Q 036801           33 FVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFK  112 (388)
Q Consensus        33 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  112 (388)
                      +..++.+.+-+  +++.+....        +.. .+|+.+.+..  +++.+....  +.. .+|+.+.+..  .++.+..
T Consensus       112 ~~~l~~i~ip~--~i~~I~~~a--------F~~-~~L~~i~l~~--~i~~I~~~a--F~~-~~L~~i~lp~--~l~~I~~  173 (401)
T 4fdw_A          112 LKGYNEIILPN--SVKSIPKDA--------FRN-SQIAKVVLNE--GLKSIGDMA--FFN-STVQEIVFPS--TLEQLKE  173 (401)
T ss_dssp             CSSCSEEECCT--TCCEECTTT--------TTT-CCCSEEECCT--TCCEECTTT--TTT-CCCCEEECCT--TCCEECS
T ss_pred             cCCccEEEECC--ccCEehHhh--------ccc-CCccEEEeCC--CccEECHHh--cCC-CCceEEEeCC--CccEehH
Confidence            44555555544  355544431        223 3577777653  366665553  223 3577777754  5666665


Q ss_pred             cccCCccccccCCccEEEEeecCccccccccchhh--ccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCC
Q 036801          113 RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDL--LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWL  190 (388)
Q Consensus       113 ~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  190 (388)
                      ..+     ..+++|+.+++.++.+    ..++.+.  +.+|+.+.+...  +.  .+....+.++++|+.+.+.. ++  
T Consensus       174 ~aF-----~~c~~L~~l~l~~n~l----~~I~~~aF~~~~L~~l~lp~~--l~--~I~~~aF~~~~~L~~l~l~~-~l--  237 (401)
T 4fdw_A          174 DIF-----YYCYNLKKADLSKTKI----TKLPASTFVYAGIEEVLLPVT--LK--EIGSQAFLKTSQLKTIEIPE-NV--  237 (401)
T ss_dssp             STT-----TTCTTCCEEECTTSCC----SEECTTTTTTCCCSEEECCTT--CC--EECTTTTTTCTTCCCEECCT-TC--
T ss_pred             HHh-----hCcccCCeeecCCCcc----eEechhhEeecccCEEEeCCc--hh--eehhhHhhCCCCCCEEecCC-Cc--
Confidence            555     5677777777766554    3344433  457777777532  22  24445677888888888732 23  


Q ss_pred             CceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-CCCCCCCcCEEEEecCCC----ceee
Q 036801          191 PKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP-SSTSFQNLTTLEISHCNG----LKNV  265 (388)
Q Consensus       191 ~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~----l~~~  265 (388)
                        ..++.                     ..+.. .+|+.+.+.+  .++.++. .+..+++|+.+.+.+...    ...+
T Consensus       238 --~~I~~---------------------~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I  291 (401)
T 4fdw_A          238 --STIGQ---------------------EAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI  291 (401)
T ss_dssp             --CEECT---------------------TTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred             --cCccc---------------------ccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence              22232                     33333 5677777743  3444433 446777777777764211    1134


Q ss_pred             cchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEecc
Q 036801          266 LTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVD  345 (388)
Q Consensus       266 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~  345 (388)
                      +.. +...+++|+.+.+.+  .++.+....           +..+++|+.+.+..  +++.+.... |..+ +|+.+.+.
T Consensus       292 ~~~-aF~~c~~L~~l~l~~--~i~~I~~~a-----------F~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~  353 (401)
T 4fdw_A          292 HPY-CLEGCPKLARFEIPE--SIRILGQGL-----------LGGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVE  353 (401)
T ss_dssp             CTT-TTTTCTTCCEECCCT--TCCEECTTT-----------TTTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEEC
T ss_pred             CHH-HhhCCccCCeEEeCC--ceEEEhhhh-----------hcCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEc
Confidence            433 345677888888753  344442211           22346777777743  477776654 4567 89999988


Q ss_pred             CCcccccCCCC-CcCC-CCcceEEEec
Q 036801          346 DCTNMEIFSRG-ELST-PMLHKVQLNM  370 (388)
Q Consensus       346 ~c~~l~~l~~~-~~~~-~~L~~l~l~~  370 (388)
                      +. .+..++.+ +..+ ..++.+.+..
T Consensus       354 ~n-~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          354 GT-TPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             CC-CCcccccccccCCCCCccEEEeCH
Confidence            74 44444433 2334 4788888885

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.76  E-value=2.1e-08  Score=83.20  Aligned_cols=125  Identities=14%  Similarity=0.098  Sum_probs=88.5

Q ss_pred             ccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCC
Q 036801            8 LTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGD   87 (388)
Q Consensus         8 L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   87 (388)
                      .+.++++++ +++.+ |..     -.++|++|+++++ .+..++...        +..+++|++|++.++ .+..++...
T Consensus         9 ~~~l~~~~~-~l~~~-p~~-----~~~~l~~L~l~~n-~l~~~~~~~--------~~~l~~L~~L~l~~n-~l~~~~~~~   71 (177)
T 2o6r_A            9 GTEIRCNSK-GLTSV-PTG-----IPSSATRLELESN-KLQSLPHGV--------FDKLTQLTKLSLSQN-QIQSLPDGV   71 (177)
T ss_dssp             TTEEECCSS-CCSSC-CTT-----CCTTCSEEECCSS-CCCCCCTTT--------TTTCTTCSEEECCSS-CCCCCCTTT
T ss_pred             CCEEEecCC-CCccC-CCC-----CCCCCcEEEeCCC-cccEeCHHH--------hcCcccccEEECCCC-cceEeChhH
Confidence            467777764 45554 332     3467899999987 465554431        456888999999874 677777654


Q ss_pred             cccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchh---hccCccEeecccccc
Q 036801           88 VHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD---LLCKLKCLDVEFVDE  161 (388)
Q Consensus        88 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~---~l~~L~~L~l~~~~~  161 (388)
                        +..+++|++|+++++ .++.++...+     ..+++|++|++++|.+    ..+|..   .+++|++|+++++..
T Consensus        72 --~~~l~~L~~L~l~~N-~l~~~~~~~~-----~~l~~L~~L~l~~N~l----~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           72 --FDKLTKLTILYLHEN-KLQSLPNGVF-----DKLTQLKELALDTNQL----KSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             --TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             --ccCCCccCEEECCCC-CccccCHHHh-----hCCcccCEEECcCCcc----eEeCHHHhcCCcccCEEEecCCCe
Confidence              567889999999887 6666666554     5788999999998877    455543   367899999988753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.75  E-value=3.2e-08  Score=83.41  Aligned_cols=102  Identities=14%  Similarity=0.145  Sum_probs=61.3

Q ss_pred             cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801            9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV   88 (388)
Q Consensus         9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   88 (388)
                      +.+++++ +.++.+ |..+     .++|++|+++++ .+..++..         +..+++|+.|++++ +.+..++... 
T Consensus        13 ~~l~~~~-~~l~~i-p~~~-----~~~l~~L~L~~n-~i~~ip~~---------~~~l~~L~~L~Ls~-N~i~~i~~~~-   73 (193)
T 2wfh_A           13 TVVRCSN-KGLKVL-PKGI-----PRDVTELYLDGN-QFTLVPKE---------LSNYKHLTLIDLSN-NRISTLSNQS-   73 (193)
T ss_dssp             TEEECTT-SCCSSC-CSCC-----CTTCCEEECCSS-CCCSCCGG---------GGGCTTCCEEECCS-SCCCCCCTTT-
T ss_pred             CEEEcCC-CCCCcC-CCCC-----CCCCCEEECCCC-cCchhHHH---------hhcccCCCEEECCC-CcCCEeCHhH-
Confidence            4556655 345544 3322     235777777776 45555432         55677777777775 3566666554 


Q ss_pred             ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                       +..+++|++|+++++ .++.++...+     ..+++|+.|++++|.+
T Consensus        74 -f~~l~~L~~L~Ls~N-~l~~i~~~~f-----~~l~~L~~L~L~~N~l  114 (193)
T 2wfh_A           74 -FSNMTQLLTLILSYN-RLRCIPPRTF-----DGLKSLRLLSLHGNDI  114 (193)
T ss_dssp             -TTTCTTCCEEECCSS-CCCBCCTTTT-----TTCTTCCEEECCSSCC
T ss_pred             -ccCCCCCCEEECCCC-ccCEeCHHHh-----CCCCCCCEEECCCCCC
Confidence             556777777777766 4555555444     4666777777766665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.73  E-value=3.1e-08  Score=83.53  Aligned_cols=108  Identities=14%  Similarity=0.160  Sum_probs=87.6

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      ++|++|+++++ .++.+ |..+.   .+++|++|++++| .+..++...        +..+++|++|++++ +.+..+++
T Consensus        31 ~~l~~L~L~~n-~i~~i-p~~~~---~l~~L~~L~Ls~N-~i~~i~~~~--------f~~l~~L~~L~Ls~-N~l~~i~~   95 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTLV-PKELS---NYKHLTLIDLSNN-RISTLSNQS--------FSNMTQLLTLILSY-NRLRCIPP   95 (193)
T ss_dssp             TTCCEEECCSS-CCCSC-CGGGG---GCTTCCEEECCSS-CCCCCCTTT--------TTTCTTCCEEECCS-SCCCBCCT
T ss_pred             CCCCEEECCCC-cCchh-HHHhh---cccCCCEEECCCC-cCCEeCHhH--------ccCCCCCCEEECCC-CccCEeCH
Confidence            58999999986 46655 56787   8999999999998 566655432        56799999999997 47888887


Q ss_pred             CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                      ..  +..+++|++|+++++ .++.++...+     ..+++|+.|++.+|..
T Consensus        96 ~~--f~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           96 RT--FDGLKSLRLLSLHGN-DISVVPEGAF-----NDLSALSHLAIGANPL  138 (193)
T ss_dssp             TT--TTTCTTCCEEECCSS-CCCBCCTTTT-----TTCTTCCEEECCSSCE
T ss_pred             HH--hCCCCCCCEEECCCC-CCCeeChhhh-----hcCccccEEEeCCCCe
Confidence            65  778999999999998 6777777655     5789999999988765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.70  E-value=1e-06  Score=82.75  Aligned_cols=126  Identities=12%  Similarity=-0.016  Sum_probs=59.0

Q ss_pred             cCCCCCCccceEEecCCccccccC-CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCC
Q 036801          219 ESSSIMDNLVILRVSSCHHLINLV-PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDD  297 (388)
Q Consensus       219 ~~l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~  297 (388)
                      ..+..+..|+.+.+...  ...+. ..+..+..++.+.....    .++.. ....+.+|+++.+.+  .++.+...  +
T Consensus       247 ~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~----~i~~~-~F~~~~~L~~i~l~~--~i~~I~~~--a  315 (394)
T 4fs7_A          247 SVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV----IVPEK-TFYGCSSLTEVKLLD--SVKFIGEE--A  315 (394)
T ss_dssp             STTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS----EECTT-TTTTCTTCCEEEECT--TCCEECTT--T
T ss_pred             ccccccccceeEEcCCC--cceeeccccccccccceeccCce----eeccc-ccccccccccccccc--ccceechh--h
Confidence            44555566666666442  11221 22344455555544321    12221 223455666666642  23322111  1


Q ss_pred             CCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCC-CcCCCCcceEEEe
Q 036801          298 DDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQLN  369 (388)
Q Consensus       298 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l~  369 (388)
                               +..+++|+.+.+..  +++.+.... +..+.+|+.+.+..  +++.+... +..|++|+.+.+.
T Consensus       316 ---------F~~c~~L~~i~lp~--~v~~I~~~a-F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          316 ---------FESCTSLVSIDLPY--LVEEIGKRS-FRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             ---------TTTCTTCCEECCCT--TCCEECTTT-TTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred             ---------hcCCCCCCEEEeCC--cccEEhHHh-ccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence                     11235566666532  355555443 35566677766643  24454433 3356777777765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.68  E-value=5.4e-08  Score=81.96  Aligned_cols=109  Identities=16%  Similarity=0.117  Sum_probs=86.3

Q ss_pred             CcccEEeEecCCCCcccccc-cccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801            6 QNLTHLTFYNCMNLRCLFSS-STVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS   84 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~   84 (388)
                      +++++|+++++ .++.+.+. .++   .+++|++|++++| .+..+....        +..+++|++|++++ +++..++
T Consensus        29 ~~l~~L~l~~n-~i~~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~--------~~~l~~L~~L~Ls~-N~l~~~~   94 (192)
T 1w8a_A           29 LHTTELLLNDN-ELGRISSDGLFG---RLPHLVKLELKRN-QLTGIEPNA--------FEGASHIQELQLGE-NKIKEIS   94 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGG---GCTTCCEEECCSS-CCCCBCTTT--------TTTCTTCCEEECCS-CCCCEEC
T ss_pred             CCCCEEECCCC-cCCccCCccccc---cCCCCCEEECCCC-CCCCcCHhH--------cCCcccCCEEECCC-CcCCccC
Confidence            38999999986 56766554 367   8999999999998 566653321        66799999999997 4788887


Q ss_pred             CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                      +..  +..+++|++|+++++ .++.+.+..+     ..+++|++|++++|..
T Consensus        95 ~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           95 NKM--FLGLHQLKTLNLYDN-QISCVMPGSF-----EHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SSS--STTCTTCCEEECCSS-CCCEECTTSS-----TTCTTCCEEECTTCCB
T ss_pred             HHH--hcCCCCCCEEECCCC-cCCeeCHHHh-----hcCCCCCEEEeCCCCc
Confidence            765  677999999999998 6766655554     5789999999988776

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.62  E-value=6.2e-08  Score=95.46  Aligned_cols=121  Identities=11%  Similarity=0.044  Sum_probs=63.2

Q ss_pred             ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801           35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT  114 (388)
Q Consensus        35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  114 (388)
                      .|+.|++++| .+..++.          +..+++|+.|+++++ .+..+|..   ++.+++|+.|++++| .++.+| ..
T Consensus       442 ~L~~L~Ls~n-~l~~lp~----------~~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~Ls~N-~l~~lp-~l  504 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH----------LEQLLLVTHLDLSHN-RLRALPPA---LAALRCLEVLQASDN-ALENVD-GV  504 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC----------GGGGTTCCEEECCSS-CCCCCCGG---GGGCTTCCEEECCSS-CCCCCG-GG
T ss_pred             CceEEEecCC-CCCCCcC----------ccccccCcEeecCcc-cccccchh---hhcCCCCCEEECCCC-CCCCCc-cc
Confidence            3566666665 3444332          345666666666653 45554433   455666666666665 444444 22


Q ss_pred             cCCccccccCCccEEEEeecCcccccccc--c--hhhccCccEeeccccccccccccchhHhhcCCCccEEE
Q 036801          115 TNDLTKKVFPNLEELIVDAKYITTNKFLF--S--KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQ  182 (388)
Q Consensus       115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~l--p--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  182 (388)
                            ..+++|+.|++++|.+    ..+  |  .+.+++|+.|+++++............+..+++|+.|+
T Consensus       505 ------~~l~~L~~L~Ls~N~l----~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          505 ------ANLPRLQELLLCNNRL----QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             ------TTCSSCCEEECCSSCC----CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             ------CCCCCCcEEECCCCCC----CCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence                  3566666666666655    222  2  23466666666666543220001112344577777765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.61  E-value=3.2e-09  Score=90.02  Aligned_cols=126  Identities=17%  Similarity=0.100  Sum_probs=87.7

Q ss_pred             cccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCC
Q 036801           26 STVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCP  105 (388)
Q Consensus        26 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  105 (388)
                      .++   .+++|++|++++| .+..++ .         +..+++|+.|++.++ .+..++..   ...+++|++|++++| 
T Consensus        43 ~~~---~l~~L~~L~ls~n-~l~~l~-~---------~~~l~~L~~L~l~~n-~l~~l~~~---~~~~~~L~~L~L~~N-  103 (198)
T 1ds9_A           43 TLS---TLKACKHLALSTN-NIEKIS-S---------LSGMENLRILSLGRN-LIKKIENL---DAVADTLEELWISYN-  103 (198)
T ss_dssp             HHH---HTTTCSEEECSEE-EESCCC-C---------HHHHTTCCEEEEEEE-EECSCSSH---HHHHHHCSEEEEEEE-
T ss_pred             HHh---cCCCCCEEECCCC-CCcccc-c---------cccCCCCCEEECCCC-Ccccccch---hhcCCcCCEEECcCC-
Confidence            566   7889999999888 466654 2         667889999999874 57766543   445788999999888 


Q ss_pred             CceEecccccCCccccccCCccEEEEeecCccccccccc----hhhccCccEeecccccccccc--------ccchhHhh
Q 036801          106 GFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS----KDLLCKLKCLDVEFVDELTTI--------LSLDDFLQ  173 (388)
Q Consensus       106 ~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp----~~~l~~L~~L~l~~~~~~~~~--------~~~~~~~~  173 (388)
                      .++.++ ..      ..+++|+.|++++|.+    ..++    ...+++|++|+++++.... .        ......+.
T Consensus       104 ~l~~l~-~~------~~l~~L~~L~l~~N~i----~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A          104 QIASLS-GI------EKLVNLRVLYMSNNKI----TNWGEIDKLAALDKLEDLLLAGNPLYN-DYKENNATSEYRIEVVK  171 (198)
T ss_dssp             ECCCHH-HH------HHHHHSSEEEESEEEC----CCHHHHHHHTTTTTCSEEEECSCHHHH-HHHTTTTHHHHHHHHHH
T ss_pred             cCCcCC-cc------ccCCCCCEEECCCCcC----CchhHHHHHhcCCCCCEEEecCCcccc-ccccccchHHHHHHHHH
Confidence            565554 22      4788899999988876    3333    2457889999998875432 1        01123467


Q ss_pred             cCCCccEEE
Q 036801          174 RFHTLKVLQ  182 (388)
Q Consensus       174 ~l~~L~~L~  182 (388)
                      .+++|+.|+
T Consensus       172 ~l~~L~~Ld  180 (198)
T 1ds9_A          172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCSEEC
T ss_pred             hCCCcEEEC
Confidence            788888776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.60  E-value=1.8e-07  Score=77.42  Aligned_cols=62  Identities=21%  Similarity=0.224  Sum_probs=31.5

Q ss_pred             CCCCCccceEEecCCccccccCCC-CCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801          221 SSIMDNLVILRVSSCHHLINLVPS-STSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC  285 (388)
Q Consensus       221 l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  285 (388)
                      +..+++|+.|+++++ .++.+++. +..+++|++|+++++ .+..++.. ....+++|++|++.++
T Consensus        72 ~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           72 FDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred             ccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHH-HhcCCcccCEEEecCC
Confidence            345556666666655 33344332 345566666666543 44444432 2234556666666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.52  E-value=1.1e-07  Score=96.54  Aligned_cols=109  Identities=18%  Similarity=0.088  Sum_probs=78.5

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      ..+++|+.|++++|. +..+ |..++   .+++|++|+|++| .+..++..         +..+++|++|+|+++ ++..
T Consensus       221 ~~l~~L~~L~Ls~n~-l~~l-~~~~~---~l~~L~~L~Ls~N-~l~~lp~~---------~~~l~~L~~L~Ls~N-~l~~  284 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQ-IFNI-SANIF---KYDFLTRLYLNGN-SLTELPAE---------IKNLSNLRVLDLSHN-RLTS  284 (727)
T ss_dssp             -CCCCCCEEECTTSC-CSCC-CGGGG---GCCSCSCCBCTTS-CCSCCCGG---------GGGGTTCCEEECTTS-CCSS
T ss_pred             ccCCCCcEEECCCCC-CCCC-Chhhc---CCCCCCEEEeeCC-cCcccChh---------hhCCCCCCEEeCcCC-cCCc
Confidence            456788888888765 4444 55566   6888888888887 56666654         667888888888864 5776


Q ss_pred             ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcc
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYIT  137 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~  137 (388)
                      ++..   ++.+++|++|++++| .+..+|...      ..+++|+.|++++|.+.
T Consensus       285 lp~~---~~~l~~L~~L~L~~N-~l~~lp~~~------~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          285 LPAE---LGSCFQLKYFYFFDN-MVTTLPWEF------GNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CCSS---GGGGTTCSEEECCSS-CCCCCCSST------TSCTTCCCEECTTSCCC
T ss_pred             cChh---hcCCCCCCEEECCCC-CCCccChhh------hcCCCccEEeCCCCccC
Confidence            6544   567888888888887 666676654      57888888888887764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.50  E-value=3.3e-08  Score=81.17  Aligned_cols=87  Identities=13%  Similarity=0.107  Sum_probs=49.1

Q ss_pred             ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCccccc----CCCccEEEeecCCCceEe
Q 036801           35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLE----FPSLKELWISRCPGFMVK  110 (388)
Q Consensus        35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~----~~~L~~L~l~~c~~l~~~  110 (388)
                      +|++||+++|. +++   .     ....+..|++|+.|++.+|..+++.....  +..    +++|++|++++|+++++.
T Consensus        62 ~L~~LDLs~~~-Itd---~-----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           62 KIQAIDATDSC-IMS---I-----GFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CEEEEEEESCC-CCG---G-----GGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             eEeEEeCcCCC-ccH---H-----HHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHH
Confidence            47777777763 322   1     11224567777777777776666543332  222    346777777777766543


Q ss_pred             cccccCCccccccCCccEEEEeecCcc
Q 036801          111 FKRTTNDLTKKVFPNLEELIVDAKYIT  137 (388)
Q Consensus       111 ~~~~~~~~~~~~l~~L~~L~i~~~~~~  137 (388)
                      -....     ..+++|++|++++|..+
T Consensus       131 Gl~~L-----~~~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A          131 GIIAL-----HHFRNLKYLFLSDLPGV  152 (176)
T ss_dssp             HHHHG-----GGCTTCCEEEEESCTTC
T ss_pred             HHHHH-----hcCCCCCEEECCCCCCC
Confidence            22222     35677777777776543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.45  E-value=1.5e-08  Score=85.85  Aligned_cols=107  Identities=19%  Similarity=0.140  Sum_probs=81.8

Q ss_pred             cccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccc
Q 036801           63 IVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL  142 (388)
Q Consensus        63 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~  142 (388)
                      +..+++|++|+++++ .+..++  .  +..+++|++|++++| .++.++...      ..+++|+.|++++|.+    ..
T Consensus        44 ~~~l~~L~~L~ls~n-~l~~l~--~--~~~l~~L~~L~l~~n-~l~~l~~~~------~~~~~L~~L~L~~N~l----~~  107 (198)
T 1ds9_A           44 LSTLKACKHLALSTN-NIEKIS--S--LSGMENLRILSLGRN-LIKKIENLD------AVADTLEELWISYNQI----AS  107 (198)
T ss_dssp             HHHTTTCSEEECSEE-EESCCC--C--HHHHTTCCEEEEEEE-EECSCSSHH------HHHHHCSEEEEEEEEC----CC
T ss_pred             HhcCCCCCEEECCCC-CCcccc--c--cccCCCCCEEECCCC-Ccccccchh------hcCCcCCEEECcCCcC----Cc
Confidence            668999999999975 677765  3  677999999999998 566555433      4679999999999987    33


Q ss_pred             cc-hhhccCccEeeccccccccccccch-hHhhcCCCccEEEEEeccC
Q 036801          143 FS-KDLLCKLKCLDVEFVDELTTILSLD-DFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       143 lp-~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l  188 (388)
                      +| ...+++|+.|+++++....   ++. ..+..+++|+.|++..|.+
T Consensus       108 l~~~~~l~~L~~L~l~~N~i~~---~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          108 LSGIEKLVNLRVLYMSNNKITN---WGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHHHHHHSSEEEESEEECCC---HHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCccccCCCCCEEECCCCcCCc---hhHHHHHhcCCCCCEEEecCCcc
Confidence            33 3458899999999876432   222 4678899999999965666

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.44  E-value=1.5e-07  Score=95.52  Aligned_cols=105  Identities=14%  Similarity=0.082  Sum_probs=44.0

Q ss_pred             cccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc
Q 036801           65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS  144 (388)
Q Consensus        65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp  144 (388)
                      .+++|+.|+++++ .+..++..   +..+++|++|++++| .++.+|...      ..+++|+.|++++|.+    ..+|
T Consensus       222 ~l~~L~~L~Ls~n-~l~~l~~~---~~~l~~L~~L~Ls~N-~l~~lp~~~------~~l~~L~~L~Ls~N~l----~~lp  286 (727)
T 4b8c_D          222 DDQLWHALDLSNL-QIFNISAN---IFKYDFLTRLYLNGN-SLTELPAEI------KNLSNLRVLDLSHNRL----TSLP  286 (727)
T ss_dssp             CCCCCCEEECTTS-CCSCCCGG---GGGCCSCSCCBCTTS-CCSCCCGGG------GGGTTCCEEECTTSCC----SSCC
T ss_pred             cCCCCcEEECCCC-CCCCCChh---hcCCCCCCEEEeeCC-cCcccChhh------hCCCCCCEEeCcCCcC----CccC
Confidence            3444555555442 33333333   223445555555444 333333322      2444555555554444    2222


Q ss_pred             h--hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801          145 K--DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       145 ~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                      .  +.+++|++|+++++..-   .+|. .+..+++|+.|++..|.+
T Consensus       287 ~~~~~l~~L~~L~L~~N~l~---~lp~-~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          287 AELGSCFQLKYFYFFDNMVT---TLPW-EFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             SSGGGGTTCSEEECCSSCCC---CCCS-STTSCTTCCCEECTTSCC
T ss_pred             hhhcCCCCCCEEECCCCCCC---ccCh-hhhcCCCccEEeCCCCcc
Confidence            2  23445555555444221   1232 244455555555533344

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.40  E-value=6.8e-07  Score=73.56  Aligned_cols=104  Identities=12%  Similarity=0.058  Sum_probs=55.6

Q ss_pred             ccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCC
Q 036801            8 LTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGD   87 (388)
Q Consensus         8 L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   87 (388)
                      .+.+++++ +.++.+ |..     -.++|++|++++| .+..++...        +..+++|++|++.+ +++..++...
T Consensus        11 ~~~l~~s~-n~l~~i-p~~-----~~~~l~~L~L~~N-~i~~~~~~~--------~~~l~~L~~L~Ls~-N~l~~l~~~~   73 (170)
T 3g39_A           11 GTTVDCSG-KSLASV-PTG-----IPTTTQVLYLYDN-QITKLEPGV--------FDRLTQLTRLDLDN-NQLTVLPAGV   73 (170)
T ss_dssp             TTEEECTT-SCCSSC-CSC-----CCTTCSEEECCSS-CCCCCCTTT--------TTTCTTCSEEECCS-SCCCCCCTTT
T ss_pred             CCEEEeCC-CCcCcc-Ccc-----CCCCCcEEEcCCC-cCCccChhh--------hcCcccCCEEECCC-CCcCccChhh
Confidence            45566665 334444 322     1345666666666 344443221        44566666666665 3566555543


Q ss_pred             cccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           88 VHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        88 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                        +..+++|++|+++++ .++.++...+     ..+++|+.|++++|..
T Consensus        74 --f~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           74 --FDKLTQLTQLSLNDN-QLKSIPRGAF-----DNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             --TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCB
T ss_pred             --ccCCCCCCEEECCCC-ccCEeCHHHh-----cCCCCCCEEEeCCCCC
Confidence              445666666666665 4555554433     4556666666666544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.38  E-value=8.4e-07  Score=73.32  Aligned_cols=103  Identities=16%  Similarity=0.086  Sum_probs=55.0

Q ss_pred             cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801            9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV   88 (388)
Q Consensus         9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   88 (388)
                      +.++++++ +++.+ |..+     .++|++|++++| .+..++...        +..+++|++|++.+ +++..++... 
T Consensus        15 ~~l~~~~n-~l~~i-P~~~-----~~~L~~L~Ls~N-~l~~~~~~~--------~~~l~~L~~L~Ls~-N~l~~i~~~~-   76 (174)
T 2r9u_A           15 TLVNCQNI-RLASV-PAGI-----PTDKQRLWLNNN-QITKLEPGV--------FDHLVNLQQLYFNS-NKLTAIPTGV-   76 (174)
T ss_dssp             SEEECCSS-CCSSC-CSCC-----CTTCSEEECCSS-CCCCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTT-
T ss_pred             cEEEeCCC-CCCcc-CCCc-----CCCCcEEEeCCC-CccccCHHH--------hcCCcCCCEEECCC-CCCCccChhH-
Confidence            45555553 34444 3221     245666666666 344443221        44566666666665 3566655543 


Q ss_pred             ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                       +..+++|++|+++++ .+..++...+     ..+++|+.|++++|.+
T Consensus        77 -~~~l~~L~~L~L~~N-~l~~l~~~~~-----~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           77 -FDKLTQLTQLDLNDN-HLKSIPRGAF-----DNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             -TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCSEEECCSSCB
T ss_pred             -hCCcchhhEEECCCC-ccceeCHHHh-----ccccCCCEEEeCCCCc
Confidence             445666666666665 4555554433     4566666666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.36  E-value=2e-05  Score=73.86  Aligned_cols=302  Identities=11%  Similarity=0.030  Sum_probs=172.4

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecc-------
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMY-------   75 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~-------   75 (388)
                      .+|.+|+.+.+..  .++.+...+|.   ++++|+.+++.+  +++.+....        ...+.+|+.+.+.       
T Consensus        68 ~~c~~L~~i~lp~--~i~~I~~~aF~---~c~~L~~i~lp~--~l~~I~~~a--------F~~c~~L~~i~~p~~l~~i~  132 (394)
T 4fs7_A           68 QGCRKVTEIKIPS--TVREIGEFAFE---NCSKLEIINIPD--SVKMIGRCT--------FSGCYALKSILLPLMLKSIG  132 (394)
T ss_dssp             TTCTTEEEEECCT--TCCEECTTTTT---TCTTCCEECCCT--TCCEECTTT--------TTTCTTCCCCCCCTTCCEEC
T ss_pred             hCCCCceEEEeCC--CccCcchhHhh---CCCCCcEEEeCC--CceEccchh--------hcccccchhhcccCceeeec
Confidence            5688999999963  47777777777   899999999965  366655432        2223333332221       


Q ss_pred             -----cc--------cccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccc
Q 036801           76 -----DL--------EKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL  142 (388)
Q Consensus        76 -----~~--------~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~  142 (388)
                           +|        ..+..+....  +..+.+|+.+.+.+  .+..+....+     ..+.+|+.+.+..+-  +.+..
T Consensus       133 ~~aF~~~~~~~~~~~~~~~~i~~~a--F~~c~~L~~i~l~~--~~~~I~~~~F-----~~c~~L~~i~l~~~~--~~I~~  201 (394)
T 4fs7_A          133 VEAFKGCDFKEITIPEGVTVIGDEA--FATCESLEYVSLPD--SMETLHNGLF-----SGCGKLKSIKLPRNL--KIIRD  201 (394)
T ss_dssp             TTTTTTCCCSEEECCTTCCEECTTT--TTTCTTCCEEECCT--TCCEECTTTT-----TTCTTCCBCCCCTTC--CEECT
T ss_pred             ceeeecccccccccCccccccchhh--hcccCCCcEEecCC--ccceeccccc-----cCCCCceEEEcCCCc--eEeCc
Confidence                 11        1222233332  45678888888864  3455555555     577788887775531  12222


Q ss_pred             cchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee--ccceecccc
Q 036801          143 FSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY--DMKYILKHE  219 (388)
Q Consensus       143 lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l--~l~~i~~~~  219 (388)
                      .....+..|+.+.+.......    .. ......+|+.+.+.. .+    ..++...+.+... ..+.+  ....+.. .
T Consensus       202 ~~F~~~~~L~~i~~~~~~~~i----~~-~~~~~~~l~~i~ip~-~~----~~i~~~~f~~~~~l~~~~~~~~~~~i~~-~  270 (394)
T 4fs7_A          202 YCFAECILLENMEFPNSLYYL----GD-FALSKTGVKNIIIPD-SF----TELGKSVFYGCTDLESISIQNNKLRIGG-S  270 (394)
T ss_dssp             TTTTTCTTCCBCCCCTTCCEE----CT-TTTTTCCCCEEEECT-TC----CEECSSTTTTCSSCCEEEECCTTCEECS-C
T ss_pred             hhhccccccceeecCCCceEe----eh-hhcccCCCceEEECC-Cc----eecccccccccccceeEEcCCCcceeec-c
Confidence            233345566666654432111    11 223345677766621 12    2233323322222 22333  4444544 5


Q ss_pred             CCCCCCccceEEecCCccccccC-CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCC
Q 036801          220 SSSIMDNLVILRVSSCHHLINLV-PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDD  298 (388)
Q Consensus       220 ~l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~  298 (388)
                      .+..+..++.+......    ++ ..+..+.+|+.+.+.+  .+..+... +...+.+|+++++.+  .++.+...  + 
T Consensus       271 ~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~--a-  338 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLD--SVKFIGEE-AFESCTSLVSIDLPY--LVEEIGKR--S-  338 (394)
T ss_dssp             TTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECT--TCCEECTT-TTTTCTTCCEECCCT--TCCEECTT--T-
T ss_pred             ccccccccceeccCcee----ecccccccccccccccccc--ccceechh-hhcCCCCCCEEEeCC--cccEEhHH--h-
Confidence            66677788877765431    22 2456788899998863  56666654 345678899998853  24444211  1 


Q ss_pred             CccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceE
Q 036801          299 DHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKV  366 (388)
Q Consensus       299 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l  366 (388)
                              +..+.+|+.+.+..  +++.+.... +..|++|+.+++..  .++.+......|++|+.+
T Consensus       339 --------F~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          339 --------FRGCTSLSNINFPL--SLRKIGANA-FQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             --------TTTCTTCCEECCCT--TCCEECTTT-BTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred             --------ccCCCCCCEEEECc--cccEehHHH-hhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence                    22357788887754  477776664 57889999999863  344444456678888876

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.34  E-value=0.00013  Score=68.40  Aligned_cols=303  Identities=10%  Similarity=0.093  Sum_probs=151.5

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeecccc--ccccEeeecccccccccccccccccceEeccccccccccc
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKC--HVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS   84 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~--~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~   84 (388)
                      .|+.+.+-.  .++.+...+|.   ++++|+.+.+..+  ..++.+....        ...|.+|+.+.+..  ++..+.
T Consensus        65 ~L~sI~iP~--svt~Ig~~AF~---~C~~L~~i~~~~n~p~~l~~Ig~~a--------F~~c~~L~~i~~~~--~~~~I~  129 (394)
T 4gt6_A           65 VLTSVQIPD--TVTEIGSNAFY---NCTSLKRVTIQDNKPSCVKKIGRQA--------FMFCSELTDIPILD--SVTEID  129 (394)
T ss_dssp             CCCEEEECT--TCCEECTTTTT---TCTTCCEEEEGGGCCCCCCEECTTT--------TTTCTTCCBCGGGT--TCSEEC
T ss_pred             cCEEEEECC--CeeEEhHHHhh---CCccCceEeecCCCCCeeeEechhh--------chhcccceeeccCC--ccceeh
Confidence            477777753  46666666677   7888888888664  2355544331        34567777766643  455665


Q ss_pred             CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccc
Q 036801           85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTT  164 (388)
Q Consensus        85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~  164 (388)
                      ...  +..+.+|+.+.+..  .+..+....+     ..+.+|+.+.+..+-.  .+..... ...+|+.+.+......  
T Consensus       130 ~~a--F~~c~~L~~i~lp~--~~~~I~~~~F-----~~c~~L~~i~~~~~~~--~I~~~aF-~~~~l~~i~ip~~~~~--  195 (394)
T 4gt6_A          130 SEA--FHHCEELDTVTIPE--GVTSVADGMF-----SYCYSLHTVTLPDSVT--AIEERAF-TGTALTQIHIPAKVTR--  195 (394)
T ss_dssp             TTT--TTTCTTCCEEECCT--TCCEECTTTT-----TTCTTCCEEECCTTCC--EECTTTT-TTCCCSEEEECTTCCE--
T ss_pred             hhh--hhhhcccccccccc--eeeeecccce-----ecccccccccccceee--Eeccccc-cccceeEEEECCcccc--
Confidence            554  55678888888753  3444544444     4677777777754311  1111111 1346777766542211  


Q ss_pred             cccchhHhhcCCCccEEEEEeccCCCCceeecCcccc--------------ccceeeeee--ccceeccccCCCCCCccc
Q 036801          165 ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEV--------------IIREAYNCY--DMKYILKHESSSIMDNLV  228 (388)
Q Consensus       165 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--------------~L~~~~l~l--~l~~i~~~~~l~~l~~L~  228 (388)
                        .....+..+.++..........    ......++.              ......+.+  .+..+.. ..+..+..|+
T Consensus       196 --i~~~af~~c~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~-~aF~~c~~L~  268 (394)
T 4gt6_A          196 --IGTNAFSECFALSTITSDSESY----PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIET-HAFDSCAYLA  268 (394)
T ss_dssp             --ECTTTTTTCTTCCEEEECCSSS----CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECT-TTTTTCSSCC
T ss_pred             --cccchhhhccccceeccccccc----ccccceeecccccccccccccccccccceEEcCCcceEccc-ceeeeccccc
Confidence              1223455667777666622222    011111100              000011222  3344444 5566667777


Q ss_pred             eEEecCCccccccCC-CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccce
Q 036801          229 ILRVSSCHHLINLVP-SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEV  307 (388)
Q Consensus       229 ~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~  307 (388)
                      .+.+.+.  +..+.. .+..+++|+.+.+.  +.+..++.. +...+.+|+++.+..  .++.+...  +         +
T Consensus       269 ~i~lp~~--~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~--a---------F  330 (394)
T 4gt6_A          269 SVKMPDS--VVSIGTGAFMNCPALQDIEFS--SRITELPES-VFAGCISLKSIDIPE--GITQILDD--A---------F  330 (394)
T ss_dssp             EEECCTT--CCEECTTTTTTCTTCCEEECC--TTCCEECTT-TTTTCTTCCEEECCT--TCCEECTT--T---------T
T ss_pred             EEecccc--cceecCcccccccccccccCC--CcccccCce-eecCCCCcCEEEeCC--cccEehHh--H---------h
Confidence            7776432  222222 34566677777764  345555554 234566777777643  23333211  1         2


Q ss_pred             ecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801          308 IAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN  369 (388)
Q Consensus       308 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~  369 (388)
                      ..+.+|+.+.+..  +++.+.... |..|.+|+.+++.+....  + .....+.+|+.+.+.
T Consensus       331 ~~C~~L~~i~ip~--sv~~I~~~a-F~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          331 AGCEQLERIAIPS--SVTKIPESA-FSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVA  386 (394)
T ss_dssp             TTCTTCCEEEECT--TCCBCCGGG-GTTCTTCCEEEESSCHHH--H-HTCBCCCCC------
T ss_pred             hCCCCCCEEEECc--ccCEEhHhH-hhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeC
Confidence            2345666666632  355554442 456677777777653211  1 122345566666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.31  E-value=3.6e-07  Score=74.94  Aligned_cols=90  Identities=14%  Similarity=0.275  Sum_probs=53.7

Q ss_pred             CccceEEecCCcccccc-CCCCCCCCCcCEEEEecCCCceeecchhhhhc---cCccCEEeeccccccccccccCCCCCc
Q 036801          225 DNLVILRVSSCHHLINL-VPSSTSFQNLTTLEISHCNGLKNVLTFLIAKT---LVRLREMKIESCAMITEIVLADDDDDH  300 (388)
Q Consensus       225 ~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~---~~~L~~L~l~~c~~l~~i~~~~~~~~~  300 (388)
                      -.|++|++++|. +++. ...+..+++|+.|++++|..+++.....+...   .++|++|++++|..+++-....     
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-----  134 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-----  134 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-----
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-----
Confidence            367888888876 4332 22345777888888888877776554433321   3467777777777666432211     


Q ss_pred             cccccceecccccceeecccccccce
Q 036801          301 DAAKDEVIAFSKLNELRLLNLESLRS  326 (388)
Q Consensus       301 ~~~~~~~~~~~~L~~L~l~~c~~l~~  326 (388)
                            ...+++|++|++++|+.+++
T Consensus       135 ------L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          135 ------LHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             ------GGGCTTCCEEEEESCTTCCC
T ss_pred             ------HhcCCCCCEEECCCCCCCCc
Confidence                  11246666666666665554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.29  E-value=1.2e-06  Score=72.38  Aligned_cols=84  Identities=19%  Similarity=0.217  Sum_probs=70.1

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      ++|++|+++++ .++.+.|..++   ++++|++|+|++| ++..++...        +..+++|+.|++.+ +.+..++.
T Consensus        33 ~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~i~~~~--------~~~l~~L~~L~L~~-N~l~~l~~   98 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLEPGVFD---HLVNLQQLYFNSN-KLTAIPTGV--------FDKLTQLTQLDLND-NHLKSIPR   98 (174)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTT--------TTTCTTCCEEECCS-SCCCCCCT
T ss_pred             CCCcEEEeCCC-CccccCHHHhc---CCcCCCEEECCCC-CCCccChhH--------hCCcchhhEEECCC-CccceeCH
Confidence            68999999985 57777777788   8999999999999 677766541        45799999999997 57888887


Q ss_pred             CCcccccCCCccEEEeecCC
Q 036801           86 GDVHMLEFPSLKELWISRCP  105 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~  105 (388)
                      ..  +..+++|+.|++++++
T Consensus        99 ~~--~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           99 GA--FDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TT--TTTCTTCSEEECCSSC
T ss_pred             HH--hccccCCCEEEeCCCC
Confidence            64  6789999999999984

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.28  E-value=1.3e-06  Score=71.84  Aligned_cols=85  Identities=19%  Similarity=0.284  Sum_probs=70.5

Q ss_pred             CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801            5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS   84 (388)
Q Consensus         5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~   84 (388)
                      .++|++|+++++ .++.+.|..++   .+++|++|++++| ++..++...        +..+++|++|++.+ +++..++
T Consensus        29 ~~~l~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~--------f~~l~~L~~L~L~~-N~l~~~~   94 (170)
T 3g39_A           29 PTTTQVLYLYDN-QITKLEPGVFD---RLTQLTRLDLDNN-QLTVLPAGV--------FDKLTQLTQLSLND-NQLKSIP   94 (170)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS-CCCCCCTTT--------TTTCTTCCEEECCS-SCCCCCC
T ss_pred             CCCCcEEEcCCC-cCCccChhhhc---CcccCCEEECCCC-CcCccChhh--------ccCCCCCCEEECCC-CccCEeC
Confidence            368999999985 67777777788   8999999999998 577766542        45799999999997 5788888


Q ss_pred             CCCcccccCCCccEEEeecCC
Q 036801           85 TGDVHMLEFPSLKELWISRCP  105 (388)
Q Consensus        85 ~~~~~~~~~~~L~~L~l~~c~  105 (388)
                      ...  +..+++|++|++++++
T Consensus        95 ~~~--~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           95 RGA--FDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTT--TTTCTTCCEEECCSSC
T ss_pred             HHH--hcCCCCCCEEEeCCCC
Confidence            765  6789999999999884

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.21  E-value=2.6e-06  Score=78.47  Aligned_cols=105  Identities=19%  Similarity=0.145  Sum_probs=80.9

Q ss_pred             cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801            9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV   88 (388)
Q Consensus         9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   88 (388)
                      ..+++++.++++.+ |. ++   .+++|++|+|+++..+..++...        +..+++|+.|+|++ +++..+++.. 
T Consensus        11 ~~v~~~~~n~l~~i-p~-l~---~~~~L~~L~l~~~n~l~~~~~~~--------~~~l~~L~~L~l~~-N~l~~~~~~~-   75 (347)
T 2ifg_A           11 SGLRCTRDGALDSL-HH-LP---GAENLTELYIENQQHLQHLELRD--------LRGLGELRNLTIVK-SGLRFVAPDA-   75 (347)
T ss_dssp             SCEECCSSCCCTTT-TT-SC---SCSCCSEEECCSCSSCCEECGGG--------SCSCCCCSEEECCS-SCCCEECTTG-
T ss_pred             CEEEcCCCCCCCcc-CC-CC---CCCCeeEEEccCCCCCCCcChhH--------hccccCCCEEECCC-CccceeCHHH-
Confidence            34577765467776 55 88   79999999999733788877542        56799999999997 4788888775 


Q ss_pred             ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                       +..+++|+.|+++++ .++.++...+     ..++ |+.|++.+|.+
T Consensus        76 -~~~l~~L~~L~l~~N-~l~~~~~~~~-----~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           76 -FHFTPRLSRLNLSFN-ALESLSWKTV-----QGLS-LQELVLSGNPL  115 (347)
T ss_dssp             -GGSCSCCCEEECCSS-CCSCCCSTTT-----CSCC-CCEEECCSSCC
T ss_pred             -hcCCcCCCEEeCCCC-ccceeCHHHc-----ccCC-ceEEEeeCCCc
Confidence             678999999999988 7777777665     3344 99999988776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.12  E-value=2.6e-07  Score=86.15  Aligned_cols=11  Identities=27%  Similarity=0.652  Sum_probs=5.9

Q ss_pred             CCccEEEeecC
Q 036801           94 PSLKELWISRC  104 (388)
Q Consensus        94 ~~L~~L~l~~c  104 (388)
                      ++|++|++++|
T Consensus       101 ~~L~~L~Ls~n  111 (372)
T 3un9_A          101 HALDEVNLASC  111 (372)
T ss_dssp             SCEEEEECTTC
T ss_pred             CCceEEEecCC
Confidence            45555555555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.11  E-value=6.1e-06  Score=75.96  Aligned_cols=88  Identities=27%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801            2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT   81 (388)
Q Consensus         2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~   81 (388)
                      ++.+++|++|+|++++.++.+++.+|+   ++++|+.|+|++| ++..++...        +..+++|+.|+|++ +++.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~---~l~~L~~L~l~~N-~l~~~~~~~--------~~~l~~L~~L~l~~-N~l~   93 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIVKS-GLRFVAPDA--------FHFTPRLSRLNLSF-NALE   93 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSC---SCCCCSEEECCSS-CCCEECTTG--------GGSCSCCCEEECCS-SCCS
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhc---cccCCCEEECCCC-ccceeCHHH--------hcCCcCCCEEeCCC-Cccc
Confidence            356778999999976788888778888   8999999999999 688776642        56799999999997 5788


Q ss_pred             cccCCCcccccCCCccEEEeecCC
Q 036801           82 SFSTGDVHMLEFPSLKELWISRCP  105 (388)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~l~~c~  105 (388)
                      .++...  +..++ |+.|++.++.
T Consensus        94 ~~~~~~--~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           94 SLSWKT--VQGLS-LQELVLSGNP  114 (347)
T ss_dssp             CCCSTT--TCSCC-CCEEECCSSC
T ss_pred             eeCHHH--cccCC-ceEEEeeCCC
Confidence            888764  34444 9999998874

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.00  E-value=0.00056  Score=63.94  Aligned_cols=107  Identities=14%  Similarity=0.073  Sum_probs=68.4

Q ss_pred             CcCCCcccEEeEecC--CCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccc
Q 036801            2 TCGIQNLTHLTFYNC--MNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEK   79 (388)
Q Consensus         2 ~~~l~~L~~L~l~~~--~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (388)
                      ..+|.+|+.+.+..+  ..++.+...+|.   .+.+|+.+.+-.  +++.+....        ...+.+|+.+.+..  .
T Consensus        83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~---~c~~L~~i~~~~--~~~~I~~~a--------F~~c~~L~~i~lp~--~  147 (394)
T 4gt6_A           83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFM---FCSELTDIPILD--SVTEIDSEA--------FHHCEELDTVTIPE--G  147 (394)
T ss_dssp             TTTCTTCCEEEEGGGCCCCCCEECTTTTT---TCTTCCBCGGGT--TCSEECTTT--------TTTCTTCCEEECCT--T
T ss_pred             hhCCccCceEeecCCCCCeeeEechhhch---hcccceeeccCC--ccceehhhh--------hhhhcccccccccc--e
Confidence            357889999999764  346666666677   788899888765  466655442        45678888888853  3


Q ss_pred             cccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEee
Q 036801           80 LTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDA  133 (388)
Q Consensus        80 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~  133 (388)
                      +..+....  +..+.+|+.+.+..  .++.+....+      ...+|+.+.+..
T Consensus       148 ~~~I~~~~--F~~c~~L~~i~~~~--~~~~I~~~aF------~~~~l~~i~ip~  191 (394)
T 4gt6_A          148 VTSVADGM--FSYCYSLHTVTLPD--SVTAIEERAF------TGTALTQIHIPA  191 (394)
T ss_dssp             CCEECTTT--TTTCTTCCEEECCT--TCCEECTTTT------TTCCCSEEEECT
T ss_pred             eeeecccc--eecccccccccccc--eeeEeccccc------cccceeEEEECC
Confidence            55555443  55677888887754  3444444443      224566666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.92  E-value=1.9e-05  Score=73.05  Aligned_cols=57  Identities=18%  Similarity=0.121  Sum_probs=24.4

Q ss_pred             ccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEE
Q 036801          122 VFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI  183 (388)
Q Consensus       122 ~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  183 (388)
                      .+|+|+.|.+.++..    ..++....++|++|++..+..-. .....-....+++|+.|++
T Consensus       170 ~~P~L~~L~L~g~~~----l~l~~~~~~~L~~L~L~~~~l~~-~~l~~l~~~~lp~L~~L~L  226 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNN----LSIGKKPRPNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVL  226 (362)
T ss_dssp             TCTTCCEEEEECCBT----CBCCSCBCTTCSEEEEECSBCCH-HHHHHHHHSBCTTCCEEEE
T ss_pred             cCCCCcEEEEeCCCC----ceeccccCCCCcEEEEecCCCCh-HHHHHHHHccCCCCcEEEE
Confidence            445566666555421    11121224566666665443211 1111001124666776666

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.87  E-value=1.3e-05  Score=74.08  Aligned_cols=36  Identities=8%  Similarity=0.048  Sum_probs=18.5

Q ss_pred             ccccceeecccccccce-----eccCcccccCCCcceEeccCCc
Q 036801          310 FSKLNELRLLNLESLRS-----FYSGYCALNFPSLERLLVDDCT  348 (388)
Q Consensus       310 ~~~L~~L~l~~c~~l~~-----l~~~~~~~~~~~L~~L~l~~c~  348 (388)
                      +++|+.|+++.+ .+.+     +..+.  ..+++|+.|++++|.
T Consensus       278 ~~~L~~LdLs~n-~L~d~G~~~L~~~L--~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          278 LPQLETMDISAG-VLTDEGARLLLDHV--DKIKHLKFINMKYNY  318 (362)
T ss_dssp             GGGCSEEECCSS-CCBHHHHHHHHTTH--HHHTTCSEEECCSBB
T ss_pred             CCCCCEEECCCC-CCChHHHHHHHhhc--ccCCcceEEECCCCc
Confidence            456666666543 3333     22222  345667777776653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.76  E-value=1.3e-06  Score=81.28  Aligned_cols=170  Identities=11%  Similarity=0.051  Sum_probs=99.0

Q ss_pred             cCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccc--h
Q 036801           92 EFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSL--D  169 (388)
Q Consensus        92 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~--~  169 (388)
                      .+++|++|++++| .+.......+...+....++|++|++++|.+.......-...+++|++|++++|..-. ....  .
T Consensus        70 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~-~~~~~L~  147 (372)
T 3un9_A           70 VLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP-EACKDLR  147 (372)
T ss_dssp             HHTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH-HHHHHHH
T ss_pred             HHhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH-HHHHHHH
Confidence            3678999999888 3443222221111112346899999999876321111112346789999999875322 1110  1


Q ss_pred             hHh-hcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccc-----cCC
Q 036801          170 DFL-QRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN-----LVP  243 (388)
Q Consensus       170 ~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~-----l~~  243 (388)
                      ..+ ...++|++|++..|.+   +..-...+.                  ..+...++|++|++++|. +++     +..
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l---~~~~~~~l~------------------~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~  205 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPL---TAAGVAVLM------------------EGLAGNTSVTHLSLLHTG-LGDEGLELLAA  205 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCC---HHHHHHHHH------------------HHHHTCSSCCEEECTTSS-CHHHHHHHHHH
T ss_pred             HHHHhcCCccceeeCCCCCC---ChHHHHHHH------------------HHHhcCCCcCEEeCCCCC-CCcHHHHHHHH
Confidence            112 2467899999965566   321100010                  334456889999999885 332     233


Q ss_pred             CCCCCCCcCEEEEecCCCceeecchhh---hhccCccCEEeecccc
Q 036801          244 SSTSFQNLTTLEISHCNGLKNVLTFLI---AKTLVRLREMKIESCA  286 (388)
Q Consensus       244 ~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~~~~L~~L~l~~c~  286 (388)
                      .+...++|+.|++++| .+.+.....+   ....++|++|+++++.
T Consensus       206 ~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          206 QLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            4556778999999876 4554433222   2345889999997663

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.37  E-value=0.036  Score=51.14  Aligned_cols=79  Identities=8%  Similarity=0.001  Sum_probs=43.2

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      ...+|+.+.+-.  +++.+....        ...|.+|+.+.+..  .++.+....  +..+ +|+.+.+.  ..++.+.
T Consensus        44 ~~~~i~~v~ip~--~vt~Ig~~a--------F~~C~~L~~I~lp~--~v~~Ig~~a--F~~c-~l~~i~~~--~~l~~I~  106 (379)
T 4h09_A           44 DRDRISEVRVNS--GITSIGEAN--------FNSCYNMTKVTVAS--TVTSIGDGA--FADT-KLQSYTGM--ERVKKFG  106 (379)
T ss_dssp             GGGGCSEEEECT--TEEEECTTT--------TTTCTTCCEEEECT--TCCEECTTT--TTTC-CCCEEEEC--TTCCEEC
T ss_pred             cccCCEEEEeCC--CccChHHHH--------hhCCCCCCEEEeCC--cceEechhh--hcCC-CCceEECC--ceeeEec
Confidence            556677777754  466655542        44677777777753  355555553  3333 45555553  2455554


Q ss_pred             ccccCCccccccCCccEEEEee
Q 036801          112 KRTTNDLTKKVFPNLEELIVDA  133 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~  133 (388)
                      ...+      ...+|+.+.+.+
T Consensus       107 ~~aF------~~~~L~~i~lp~  122 (379)
T 4h09_A          107 DYVF------QGTDLDDFEFPG  122 (379)
T ss_dssp             TTTT------TTCCCSEEECCT
T ss_pred             ccee------ccCCcccccCCC
Confidence            4443      123566666644

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.36  E-value=0.019  Score=53.04  Aligned_cols=100  Identities=13%  Similarity=0.129  Sum_probs=61.4

Q ss_pred             ccceeccccCCCCCCccceEEecCCccccccCC-CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccc
Q 036801          211 DMKYILKHESSSIMDNLVILRVSSCHHLINLVP-SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMIT  289 (388)
Q Consensus       211 ~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  289 (388)
                      .+..|.. ..+..+.+|+.+.+..  .++.++. .+..+++|+.+.+.+ ..+..+... +...+.+|+++.+..  .++
T Consensus       250 ~v~~I~~-~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~-aF~~c~~L~~i~lp~--~l~  322 (379)
T 4h09_A          250 NVTSIGS-FLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPR-VFMDCVKLSSVTLPT--ALK  322 (379)
T ss_dssp             TCCEECT-TTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTT-TTTTCTTCCEEECCT--TCC
T ss_pred             CccEeCc-cccceeehhccccccc--cceeccccccccccccccccccc-cccceehhh-hhcCCCCCCEEEcCc--ccc
Confidence            4555555 6677778888888854  3444443 456788899988864 346666554 345678888888853  244


Q ss_pred             cccccCCCCCccccccceecccccceeecccccccceeccC
Q 036801          290 EIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSG  330 (388)
Q Consensus       290 ~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~  330 (388)
                      .+...  +         +..+++|+.+.+..  +++.+...
T Consensus       323 ~I~~~--a---------F~~C~~L~~i~ip~--~v~~I~~~  350 (379)
T 4h09_A          323 TIQVY--A---------FKNCKALSTISYPK--SITLIESG  350 (379)
T ss_dssp             EECTT--T---------TTTCTTCCCCCCCT--TCCEECTT
T ss_pred             EEHHH--H---------hhCCCCCCEEEECC--ccCEEchh
Confidence            44211  1         22346777777743  46666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.07  E-value=0.00067  Score=56.21  Aligned_cols=122  Identities=8%  Similarity=-0.033  Sum_probs=59.0

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc--ccccCCCccEEEeecCCCceE
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV--HMLEFPSLKELWISRCPGFMV  109 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~  109 (388)
                      ..++|++|+|++|..+.+-....    ....+...++|++|+++++ .+.+.....+  .....++|++|++++| .+..
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~----l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~  107 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKA----CAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISG  107 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHH----HHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHH----HHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence            56677777777762232210000    0000344567777877764 3443211100  0223577888888777 3332


Q ss_pred             ecccccCCccccccCCccEEEE--eecCccccc-cccch--hhccCccEeeccccc
Q 036801          110 KFKRTTNDLTKKVFPNLEELIV--DAKYITTNK-FLFSK--DLLCKLKCLDVEFVD  160 (388)
Q Consensus       110 ~~~~~~~~~~~~~l~~L~~L~i--~~~~~~~~~-~~lp~--~~l~~L~~L~l~~~~  160 (388)
                      .....++ ..-...++|++|++  .+|.+.... ..+..  ...+.|++|+++++.
T Consensus       108 ~g~~~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          108 SGILALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            1100000 00134567888888  556653211 11111  124688888888764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.92  E-value=0.0026  Score=55.81  Aligned_cols=89  Identities=20%  Similarity=0.222  Sum_probs=48.4

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+++|++|+|++| .+..+.....      .+..+++|+.|+|++ +.+.++.... ....+ +|++|.+++++.-..++
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~------~~~~l~~L~~L~Ls~-N~i~~~~~l~-~l~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSS------IVQKAPNLKILNLSG-NELKSERELD-KIKGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTT------HHHHSTTCCEEECTT-SCCCSGGGGG-GGTTS-CCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCC-CCCCCccchh------HHhhCCCCCEEECCC-CccCCchhhh-hcccC-CcceEEccCCcCccccC
Confidence            5778888888887 4555432100      034678888888876 4566552211 11223 78888888876433222


Q ss_pred             ccc-cCCccccccCCccEEE
Q 036801          112 KRT-TNDLTKKVFPNLEELI  130 (388)
Q Consensus       112 ~~~-~~~~~~~~l~~L~~L~  130 (388)
                      ... +...+...+|+|+.|+
T Consensus       238 ~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          238 DQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             SHHHHHHHHHHHCTTCCEES
T ss_pred             cchhHHHHHHHHCcccCeEC
Confidence            110 0001125677887776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.56  E-value=0.0035  Score=51.78  Aligned_cols=62  Identities=21%  Similarity=0.125  Sum_probs=27.6

Q ss_pred             CCccceEEecCCcccc----ccCCCCCCCCCcCEEEEe-cCCCceeecchh---hhhccCccCEEeeccc
Q 036801          224 MDNLVILRVSSCHHLI----NLVPSSTSFQNLTTLEIS-HCNGLKNVLTFL---IAKTLVRLREMKIESC  285 (388)
Q Consensus       224 l~~L~~L~l~~c~~l~----~l~~~~~~~~~L~~L~l~-~c~~l~~~~~~~---~~~~~~~L~~L~l~~c  285 (388)
                      .++|++|++++|..-.    .+...+...++|++|+++ ..+.+.+.....   +....++|++|+++++
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            3456666665553211    122233445556666662 123444322111   1223356666666544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.33  E-value=0.013  Score=51.41  Aligned_cols=81  Identities=20%  Similarity=0.094  Sum_probs=47.2

Q ss_pred             cCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccccc-chhhcc--CccEeeccccccccccccc
Q 036801           92 EFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF-SKDLLC--KLKCLDVEFVDELTTILSL  168 (388)
Q Consensus        92 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l-p~~~l~--~L~~L~l~~~~~~~~~~~~  168 (388)
                      .+|+|+.|+++++ .+..++.-.   .....+++|+.|++++|.+.    .+ ....+.  +|++|++.++....  .++
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~---~~~~~l~~L~~L~Ls~N~i~----~~~~l~~l~~l~L~~L~L~~Npl~~--~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMS---SIVQKAPNLKILNLSGNELK----SERELDKIKGLKLEELWLDGNSLCD--TFR  237 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGT---THHHHSTTCCEEECTTSCCC----SGGGGGGGTTSCCSEEECTTSTTGG--GCS
T ss_pred             hCCCCCEEECCCC-CCCCCccch---hHHhhCCCCCEEECCCCccC----CchhhhhcccCCcceEEccCCcCcc--ccC
Confidence            4778888888777 555443210   00146788888888877763    22 122333  78888887765332  122


Q ss_pred             ------hhHhhcCCCccEEE
Q 036801          169 ------DDFLQRFHTLKVLQ  182 (388)
Q Consensus       169 ------~~~~~~l~~L~~L~  182 (388)
                            ...+..+++|+.|+
T Consensus       238 ~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          238 DQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             SHHHHHHHHHHHCTTCCEES
T ss_pred             cchhHHHHHHHHCcccCeEC
Confidence                  23566778887664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=88.65  E-value=0.44  Score=36.48  Aligned_cols=41  Identities=17%  Similarity=0.292  Sum_probs=23.6

Q ss_pred             CCcceEeccCCcccccCCCCC-cCCCCcceEEEeccCCcccccccC
Q 036801          337 PSLERLLVDDCTNMEIFSRGE-LSTPMLHKVQLNMWDEACWAWKEG  381 (388)
Q Consensus       337 ~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~l~l~~~~~~~~~~~~~  381 (388)
                      ++|++|++++ ++++.+|.+. ..+++|+.|++.   ++.|.++.+
T Consensus        31 ~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~---~NP~~CdC~   72 (130)
T 3rfe_A           31 VDTTELVLTG-NNLTALPPGLLDALPALRTAHLG---ANPWRCDCR   72 (130)
T ss_dssp             TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECC---SSCCBCSGG
T ss_pred             cCCCEEECCC-CcCCccChhhhhhccccCEEEec---CCCeeccCc
Confidence            4566666665 4566665543 234666666666   566655444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=86.52  E-value=0.75  Score=35.11  Aligned_cols=36  Identities=14%  Similarity=0.075  Sum_probs=18.2

Q ss_pred             CCCccEEEeecCCCceEecccccCCccccccCCccEEEEeec
Q 036801           93 FPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAK  134 (388)
Q Consensus        93 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~  134 (388)
                      .++|+.|+++++ .++.++...+     ..+++|+.|++.+|
T Consensus        30 p~~l~~L~Ls~N-~l~~l~~~~f-----~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           30 PVDTTELVLTGN-NLTALPPGLL-----DALPALRTAHLGAN   65 (130)
T ss_dssp             CTTCSEEECTTS-CCSSCCTTTG-----GGCTTCCEEECCSS
T ss_pred             CcCCCEEECCCC-cCCccChhhh-----hhccccCEEEecCC
Confidence            334555555554 4444544444     34555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	388
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.72
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.63
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.6
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.57
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.56
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.53
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.51
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.41
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.41
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.4
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.38
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.33
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.31
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.31
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.28
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.25
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.22
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.2
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.04
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.0
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.9
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.81
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.81
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.73
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.36
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.27
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.04
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.81
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.66
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.4
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.38
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.01
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	91.28
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.24
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.19

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3.1e-16  Score=145.11  Aligned_cols=296  Identities=15%  Similarity=0.161  Sum_probs=174.3

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      .+.+|++|.++++ +++++  +.+.   .+++|++|++++| .+++++.          +..+++|++|+++++ .+.++
T Consensus        42 ~l~~l~~L~l~~~-~I~~l--~gl~---~L~nL~~L~Ls~N-~l~~l~~----------l~~L~~L~~L~L~~n-~i~~i  103 (384)
T d2omza2          42 DLDQVTTLQADRL-GIKSI--DGVE---YLNNLTQINFSNN-QLTDITP----------LKNLTKLVDILMNNN-QIADI  103 (384)
T ss_dssp             HHTTCCEEECCSS-CCCCC--TTGG---GCTTCCEEECCSS-CCCCCGG----------GTTCTTCCEEECCSS-CCCCC
T ss_pred             HhCCCCEEECCCC-CCCCc--cccc---cCCCCCEEeCcCC-cCCCCcc----------ccCCccccccccccc-ccccc
Confidence            3568999999885 46654  4567   7999999999998 5776543          567899999999876 46655


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcc-----------------------c--
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYIT-----------------------T--  138 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~-----------------------~--  138 (388)
                      ++    +..+++|+.|++.++. ++.......       ...+.......+.+.                       .  
T Consensus       104 ~~----l~~l~~L~~L~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (384)
T d2omza2         104 TP----LANLTNLTGLTLFNNQ-ITDIDPLKN-------LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL  171 (384)
T ss_dssp             GG----GTTCTTCCEEECCSSC-CCCCGGGTT-------CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGG
T ss_pred             cc----cccccccccccccccc-ccccccccc-------cccccccccccccccccccccccccccccccccccchhhhh
Confidence            42    3468999999987653 222211110       000111100000000                       0  


Q ss_pred             ---------------cccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeec-Cccccc
Q 036801          139 ---------------NKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVE-NGVEVI  202 (388)
Q Consensus       139 ---------------~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~~~~~~  202 (388)
                                     .........+++++.++++.+....   ++  ....+++|++|++..+.+   +. ++ ....++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~---~~--~~~~~~~L~~L~l~~n~l---~~-~~~l~~l~~  242 (384)
T d2omza2         172 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD---IT--PLGILTNLDELSLNGNQL---KD-IGTLASLTN  242 (384)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC---CG--GGGGCTTCCEEECCSSCC---CC-CGGGGGCTT
T ss_pred             ccccccccccccccccccccccccccccceeeccCCccCC---CC--cccccCCCCEEECCCCCC---CC-cchhhcccc
Confidence                           0000111234556666665543221   11  123455666666644444   22 11 111111


Q ss_pred             cceeeeee---ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCE
Q 036801          203 IREAYNCY---DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLRE  279 (388)
Q Consensus       203 L~~~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~  279 (388)
                      +.  .+++   .+.++   ..+..+++|+.|+++++. +..++ .+..++.++.+.+..+ .+..+..   ...+++++.
T Consensus       243 L~--~L~l~~n~l~~~---~~~~~~~~L~~L~l~~~~-l~~~~-~~~~~~~l~~l~~~~n-~l~~~~~---~~~~~~l~~  311 (384)
T d2omza2         243 LT--DLDLANNQISNL---APLSGLTKLTELKLGANQ-ISNIS-PLAGLTALTNLELNEN-QLEDISP---ISNLKNLTY  311 (384)
T ss_dssp             CS--EEECCSSCCCCC---GGGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSE
T ss_pred             cc--hhccccCccCCC---CcccccccCCEeeccCcc-cCCCC-cccccccccccccccc-ccccccc---cchhcccCe
Confidence            22  2222   22222   335567888888887763 44443 3556777888888754 4544433   346788999


Q ss_pred             EeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcC
Q 036801          280 MKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELS  359 (388)
Q Consensus       280 L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~  359 (388)
                      |+++++ .++++..             ...+++|++|++.+| .++.++. .  ..+++|++|++++| +++.++. +..
T Consensus       312 L~ls~n-~l~~l~~-------------l~~l~~L~~L~L~~n-~l~~l~~-l--~~l~~L~~L~l~~N-~l~~l~~-l~~  371 (384)
T d2omza2         312 LTLYFN-NISDISP-------------VSSLTKLQRLFFANN-KVSDVSS-L--ANLTNINWLSAGHN-QISDLTP-LAN  371 (384)
T ss_dssp             EECCSS-CCSCCGG-------------GGGCTTCCEEECCSS-CCCCCGG-G--GGCTTCCEEECCSS-CCCBCGG-GTT
T ss_pred             EECCCC-CCCCCcc-------------cccCCCCCEEECCCC-CCCCChh-H--cCCCCCCEEECCCC-cCCCChh-hcc
Confidence            999765 4554431             224789999999998 6777763 3  67899999999875 6777764 557


Q ss_pred             CCCcceEEEe
Q 036801          360 TPMLHKVQLN  369 (388)
Q Consensus       360 ~~~L~~l~l~  369 (388)
                      +++|+.|+++
T Consensus       372 l~~L~~L~L~  381 (384)
T d2omza2         372 LTRITQLGLN  381 (384)
T ss_dssp             CTTCSEEECC
T ss_pred             CCCCCEeeCC
Confidence            8999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=9.7e-15  Score=130.92  Aligned_cols=81  Identities=19%  Similarity=0.260  Sum_probs=45.9

Q ss_pred             ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801           35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT  114 (388)
Q Consensus        35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  114 (388)
                      ++++|++++| +++.++...        +..+++|++|++.++ .+..+.+..  +..+++|++|+++++ .++.++.. 
T Consensus        32 ~l~~L~Ls~N-~i~~l~~~~--------f~~l~~L~~L~l~~n-~~~~i~~~~--f~~l~~L~~L~l~~n-~l~~l~~~-   97 (305)
T d1xkua_          32 DTALLDLQNN-KITEIKDGD--------FKNLKNLHTLILINN-KISKISPGA--FAPLVKLERLYLSKN-QLKELPEK-   97 (305)
T ss_dssp             TCCEEECCSS-CCCCBCTTT--------TTTCTTCCEEECCSS-CCCCBCTTT--TTTCTTCCEEECCSS-CCSBCCSS-
T ss_pred             CCCEEECcCC-cCCCcChhH--------hhccccccccccccc-cccccchhh--hhCCCccCEecccCC-ccCcCccc-
Confidence            4677777776 465555421        445667777777654 355554443  455666777777666 45444432 


Q ss_pred             cCCccccccCCccEEEEeecCc
Q 036801          115 TNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus       115 ~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                             ..+.+..|....+.+
T Consensus        98 -------~~~~l~~L~~~~n~l  112 (305)
T d1xkua_          98 -------MPKTLQELRVHENEI  112 (305)
T ss_dssp             -------CCTTCCEEECCSSCC
T ss_pred             -------hhhhhhhhhccccch
Confidence                   234556666555544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=2.4e-14  Score=128.30  Aligned_cols=249  Identities=16%  Similarity=0.146  Sum_probs=175.4

Q ss_pred             ccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch
Q 036801           66 FPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK  145 (388)
Q Consensus        66 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~  145 (388)
                      .+++++|+++++ +++.++...  +..+++|++|++++|. +..+++..+     ..+++|++|++.+|.+    ..+|.
T Consensus        30 ~~~l~~L~Ls~N-~i~~l~~~~--f~~l~~L~~L~l~~n~-~~~i~~~~f-----~~l~~L~~L~l~~n~l----~~l~~   96 (305)
T d1xkua_          30 PPDTALLDLQNN-KITEIKDGD--FKNLKNLHTLILINNK-ISKISPGAF-----APLVKLERLYLSKNQL----KELPE   96 (305)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTT--TTTCTTCCEEECCSSC-CCCBCTTTT-----TTCTTCCEEECCSSCC----SBCCS
T ss_pred             CCCCCEEECcCC-cCCCcChhH--hhcccccccccccccc-ccccchhhh-----hCCCccCEecccCCcc----CcCcc
Confidence            367999999985 788888764  6789999999999984 555655544     6899999999999987    67888


Q ss_pred             hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCC
Q 036801          146 DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMD  225 (388)
Q Consensus       146 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~  225 (388)
                      ...+.++.|.+..+....   ++...+.....+..+....+..   .. ..                  ... ..+..++
T Consensus        97 ~~~~~l~~L~~~~n~l~~---l~~~~~~~~~~~~~l~~~~n~~---~~-~~------------------~~~-~~~~~l~  150 (305)
T d1xkua_          97 KMPKTLQELRVHENEITK---VRKSVFNGLNQMIVVELGTNPL---KS-SG------------------IEN-GAFQGMK  150 (305)
T ss_dssp             SCCTTCCEEECCSSCCCB---BCHHHHTTCTTCCEEECCSSCC---CG-GG------------------BCT-TGGGGCT
T ss_pred             chhhhhhhhhccccchhh---hhhhhhhccccccccccccccc---cc-cC------------------CCc-ccccccc
Confidence            888899999988765433   4444666677777777633322   00 00                  001 3455678


Q ss_pred             ccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCcccccc
Q 036801          226 NLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKD  305 (388)
Q Consensus       226 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~  305 (388)
                      +|+.+++.+|. +..++.  ..+++|+.|+++++.... .... ....++.++.|+++++ .++.+....          
T Consensus       151 ~L~~l~l~~n~-l~~l~~--~~~~~L~~L~l~~n~~~~-~~~~-~~~~~~~l~~L~~s~n-~l~~~~~~~----------  214 (305)
T d1xkua_         151 KLSYIRIADTN-ITTIPQ--GLPPSLTELHLDGNKITK-VDAA-SLKGLNNLAKLGLSFN-SISAVDNGS----------  214 (305)
T ss_dssp             TCCEEECCSSC-CCSCCS--SCCTTCSEEECTTSCCCE-ECTG-GGTTCTTCCEEECCSS-CCCEECTTT----------
T ss_pred             ccCccccccCC-ccccCc--ccCCccCEEECCCCcCCC-CChh-Hhhccccccccccccc-ccccccccc----------
Confidence            89999998873 444543  246789999998754433 3333 3456788999999765 455443211          


Q ss_pred             ceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCC-------cCCCCcceEEEeccCCcccc
Q 036801          306 EVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGE-------LSTPMLHKVQLNMWDEACWA  377 (388)
Q Consensus       306 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-------~~~~~L~~l~l~~~~~~~~~  377 (388)
                       ...+++|++|++.++ .++.++...  ..+++|++|+++++ +++.++...       ...+.|+.++++   ++.|.
T Consensus       215 -~~~l~~L~~L~L~~N-~L~~lp~~l--~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~---~N~~~  285 (305)
T d1xkua_         215 -LANTPHLRELHLNNN-KLVKVPGGL--ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLF---SNPVQ  285 (305)
T ss_dssp             -GGGSTTCCEEECCSS-CCSSCCTTT--TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECC---SSSSC
T ss_pred             -ccccccceeeecccc-ccccccccc--ccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECC---CCcCc
Confidence             234689999999997 688887755  67899999999985 687775432       245889999998   66554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=2.5e-14  Score=132.10  Aligned_cols=284  Identities=15%  Similarity=0.179  Sum_probs=179.8

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      ..+++|++|++++| .+++++|  ++   ++++|++|++++| .+..++.          +..+++|+.|++.++ .+..
T Consensus        63 ~~L~nL~~L~Ls~N-~l~~l~~--l~---~L~~L~~L~L~~n-~i~~i~~----------l~~l~~L~~L~~~~~-~~~~  124 (384)
T d2omza2          63 EYLNNLTQINFSNN-QLTDITP--LK---NLTKLVDILMNNN-QIADITP----------LANLTNLTGLTLFNN-QITD  124 (384)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG--GT---TCTTCCEEECCSS-CCCCCGG----------GTTCTTCCEEECCSS-CCCC
T ss_pred             ccCCCCCEEeCcCC-cCCCCcc--cc---CCccccccccccc-ccccccc----------ccccccccccccccc-cccc
Confidence            56899999999996 5777643  77   8999999999999 4555432          567899999998764 3433


Q ss_pred             ccCCCcccccCCCccEEEeecCC-----------------------CceEeccccc------------CCccccccCCcc
Q 036801           83 FSTGDVHMLEFPSLKELWISRCP-----------------------GFMVKFKRTT------------NDLTKKVFPNLE  127 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~-----------------------~l~~~~~~~~------------~~~~~~~l~~L~  127 (388)
                      .....    ....+.......+.                       .+..+.....            .......+++++
T Consensus       125 ~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (384)
T d2omza2         125 IDPLK----NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE  200 (384)
T ss_dssp             CGGGT----TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             ccccc----ccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc
Confidence            32211    12222222221110                       0000000000            001235678888


Q ss_pred             EEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceee
Q 036801          128 ELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAY  207 (388)
Q Consensus       128 ~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~  207 (388)
                      .+.++++.+.   ...|...+++|+.|+++++....   ++  .+..+++|+.+++..+.+   +...+.+..++|+..+
T Consensus       201 ~l~l~~n~i~---~~~~~~~~~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~l~~n~l---~~~~~~~~~~~L~~L~  269 (384)
T d2omza2         201 SLIATNNQIS---DITPLGILTNLDELSLNGNQLKD---IG--TLASLTNLTDLDLANNQI---SNLAPLSGLTKLTELK  269 (384)
T ss_dssp             EEECCSSCCC---CCGGGGGCTTCCEEECCSSCCCC---CG--GGGGCTTCSEEECCSSCC---CCCGGGTTCTTCSEEE
T ss_pred             eeeccCCccC---CCCcccccCCCCEEECCCCCCCC---cc--hhhcccccchhccccCcc---CCCCcccccccCCEee
Confidence            8888887662   22345567888999888875332   22  466788888888855566   3433333344444333


Q ss_pred             eee-ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeecccc
Q 036801          208 NCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCA  286 (388)
Q Consensus       208 l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~  286 (388)
                      +.- .+.++   ..+..++.++.+.+.++. ++.+ .....+++++.++++++ ++.+++.   +..+++|++|++++| 
T Consensus       270 l~~~~l~~~---~~~~~~~~l~~l~~~~n~-l~~~-~~~~~~~~l~~L~ls~n-~l~~l~~---l~~l~~L~~L~L~~n-  339 (384)
T d2omza2         270 LGANQISNI---SPLAGLTALTNLELNENQ-LEDI-SPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFANN-  339 (384)
T ss_dssp             CCSSCCCCC---GGGTTCTTCSEEECCSSC-CSCC-GGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-
T ss_pred             ccCcccCCC---Cccccccccccccccccc-cccc-cccchhcccCeEECCCC-CCCCCcc---cccCCCCCEEECCCC-
Confidence            322 44444   345567888999998773 3433 34678889999999975 6776653   357899999999887 


Q ss_pred             ccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccC
Q 036801          287 MITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDD  346 (388)
Q Consensus       287 ~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~  346 (388)
                      .++.+..             ...+++|++|+++++ .+++++. .  ..+++|+.|++++
T Consensus       340 ~l~~l~~-------------l~~l~~L~~L~l~~N-~l~~l~~-l--~~l~~L~~L~L~~  382 (384)
T d2omza2         340 KVSDVSS-------------LANLTNINWLSAGHN-QISDLTP-L--ANLTRITQLGLND  382 (384)
T ss_dssp             CCCCCGG-------------GGGCTTCCEEECCSS-CCCBCGG-G--TTCTTCSEEECCC
T ss_pred             CCCCChh-------------HcCCCCCCEEECCCC-cCCCChh-h--ccCCCCCEeeCCC
Confidence            5665531             224689999999886 5777654 2  5789999999976

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.57  E-value=5.1e-15  Score=133.32  Aligned_cols=251  Identities=12%  Similarity=0.038  Sum_probs=170.1

Q ss_pred             CcccEEeEecCCCCcc-cccccccccccccccceeecccccccc-EeeecccccccccccccccccceEecccccccccc
Q 036801            6 QNLTHLTFYNCMNLRC-LFSSSTVSNSSFVRLQYIEIEKCHVLE-ELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~-~~p~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      .+++.|+++++..... -.|..++   ++++|++|+|++|.++. .+|..         +.++++|++|+++++ ++...
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~---~L~~L~~L~Ls~~N~l~g~iP~~---------i~~L~~L~~L~Ls~N-~l~~~  116 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLA---NLPYLNFLYIGGINNLVGPIPPA---------IAKLTQLHYLYITHT-NVSGA  116 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG---GCTTCSEEEEEEETTEESCCCGG---------GGGCTTCSEEEEEEE-CCEEE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHh---cCccccccccccccccccccccc---------cccccccchhhhccc-ccccc
Confidence            3699999999743321 1467788   89999999999865554 56665         788999999999974 67776


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchh--hccCc-cEeeccccc
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD--LLCKL-KCLDVEFVD  160 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~--~l~~L-~~L~l~~~~  160 (388)
                      +...  ...++.|+.+++.++.....+|...      ..+++++.++++++...   ..+|..  .+.++ +.++++.+.
T Consensus       117 ~~~~--~~~~~~L~~l~l~~N~~~~~~p~~l------~~l~~L~~l~l~~n~l~---~~ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         117 IPDF--LSQIKTLVTLDFSYNALSGTLPPSI------SSLPNLVGITFDGNRIS---GAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             CCGG--GGGCTTCCEEECCSSEEESCCCGGG------GGCTTCCEEECCSSCCE---EECCGGGGCCCTTCCEEECCSSE
T ss_pred             cccc--ccchhhhcccccccccccccCchhh------ccCcccceeeccccccc---ccccccccccccccccccccccc
Confidence            6654  6779999999999885444444444      58999999999998764   234443  34444 777777654


Q ss_pred             cccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccc
Q 036801          161 ELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN  240 (388)
Q Consensus       161 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~  240 (388)
                      ...  ..+. .+..+..+ .+++..+..   ...++                      ..+..+++++.+++.++.. ..
T Consensus       186 l~~--~~~~-~~~~l~~~-~l~l~~~~~---~~~~~----------------------~~~~~~~~l~~l~~~~~~l-~~  235 (313)
T d1ogqa_         186 LTG--KIPP-TFANLNLA-FVDLSRNML---EGDAS----------------------VLFGSDKNTQKIHLAKNSL-AF  235 (313)
T ss_dssp             EEE--ECCG-GGGGCCCS-EEECCSSEE---EECCG----------------------GGCCTTSCCSEEECCSSEE-CC
T ss_pred             ccc--cccc-cccccccc-ccccccccc---ccccc----------------------ccccccccccccccccccc-cc
Confidence            332  2332 44544433 566632222   22222                      4455678999999988854 33


Q ss_pred             cCCCCCCCCCcCEEEEecCCCce-eecchhhhhccCccCEEeeccccccc-cccccCCCCCccccccceecccccceeec
Q 036801          241 LVPSSTSFQNLTTLEISHCNGLK-NVLTFLIAKTLVRLREMKIESCAMIT-EIVLADDDDDHDAAKDEVIAFSKLNELRL  318 (388)
Q Consensus       241 l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~l~~c~~l~-~i~~~~~~~~~~~~~~~~~~~~~L~~L~l  318 (388)
                      .++.+..+++|+.|+++++ ++. .+|.  .+..+++|++|+++++ .++ .++.             ...+++|+.+++
T Consensus       236 ~~~~~~~~~~L~~L~Ls~N-~l~g~iP~--~l~~L~~L~~L~Ls~N-~l~g~iP~-------------~~~L~~L~~l~l  298 (313)
T d1ogqa_         236 DLGKVGLSKNLNGLDLRNN-RIYGTLPQ--GLTQLKFLHSLNVSFN-NLCGEIPQ-------------GGNLQRFDVSAY  298 (313)
T ss_dssp             BGGGCCCCTTCCEEECCSS-CCEECCCG--GGGGCTTCCEEECCSS-EEEEECCC-------------STTGGGSCGGGT
T ss_pred             cccccccccccccccCccC-eecccCCh--HHhCCCCCCEEECcCC-cccccCCC-------------cccCCCCCHHHh
Confidence            3456778889999999975 455 5555  3457899999999775 354 3432             124688999999


Q ss_pred             cccccccee
Q 036801          319 LNLESLRSF  327 (388)
Q Consensus       319 ~~c~~l~~l  327 (388)
                      .+.+.+...
T Consensus       299 ~~N~~l~g~  307 (313)
T d1ogqa_         299 ANNKCLCGS  307 (313)
T ss_dssp             CSSSEEEST
T ss_pred             CCCccccCC
Confidence            887655443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.56  E-value=2.2e-14  Score=129.10  Aligned_cols=253  Identities=12%  Similarity=0.080  Sum_probs=177.2

Q ss_pred             ccccceeecccccccc--EeeecccccccccccccccccceEeccccccccc-ccCCCcccccCCCccEEEeecCCCceE
Q 036801           33 FVRLQYIEIEKCHVLE--ELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS-FSTGDVHMLEFPSLKELWISRCPGFMV  109 (388)
Q Consensus        33 l~~L~~L~L~~~~~~~--~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~  109 (388)
                      ..++++|+|.++.--.  .++..         +..+++|++|++.+++.+.+ +|..   ++.+++|++|+++++ .+..
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~---------l~~L~~L~~L~Ls~~N~l~g~iP~~---i~~L~~L~~L~Ls~N-~l~~  115 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSS---------LANLPYLNFLYIGGINNLVGPIPPA---IAKLTQLHYLYITHT-NVSG  115 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGG---------GGGCTTCSEEEEEEETTEESCCCGG---GGGCTTCSEEEEEEE-CCEE
T ss_pred             cEEEEEEECCCCCCCCCCCCChH---------HhcCccccccccccccccccccccc---cccccccchhhhccc-cccc
Confidence            3469999999983222  34444         88999999999998777774 5444   778999999999998 6666


Q ss_pred             ecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeeccccccccccccchhHhhcCCCc-cEEEEEec
Q 036801          110 KFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTL-KVLQIEGY  186 (388)
Q Consensus       110 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L-~~L~l~~~  186 (388)
                      .+...+     ..+++|+.++++.|...   ..+|.  ..+++|+.++++++....  .+|. .+..+..+ +.+.+..+
T Consensus       116 ~~~~~~-----~~~~~L~~l~l~~N~~~---~~~p~~l~~l~~L~~l~l~~n~l~~--~ip~-~~~~l~~l~~~l~~~~n  184 (313)
T d1ogqa_         116 AIPDFL-----SQIKTLVTLDFSYNALS---GTLPPSISSLPNLVGITFDGNRISG--AIPD-SYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             ECCGGG-----GGCTTCCEEECCSSEEE---SCCCGGGGGCTTCCEEECCSSCCEE--ECCG-GGGCCCTTCCEEECCSS
T ss_pred             cccccc-----cchhhhccccccccccc---ccCchhhccCcccceeecccccccc--cccc-ccccccccccccccccc
Confidence            655544     68899999999987653   33443  458899999999876443  3454 45566666 66666666


Q ss_pred             cCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeec
Q 036801          187 NYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVL  266 (388)
Q Consensus       187 ~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~  266 (388)
                      .+   +...+                      ..+..+ ....+++.++......+.....+++++.+.+.++. +...+
T Consensus       185 ~l---~~~~~----------------------~~~~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-l~~~~  237 (313)
T d1ogqa_         185 RL---TGKIP----------------------PTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDL  237 (313)
T ss_dssp             EE---EEECC----------------------GGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBG
T ss_pred             cc---ccccc----------------------cccccc-ccccccccccccccccccccccccccccccccccc-ccccc
Confidence            66   33322                      233333 34468888776666777777889999999998764 33332


Q ss_pred             chhhhhccCccCEEeeccccccc-cccccCCCCCccccccceecccccceeecccccccc-eeccCcccccCCCcceEec
Q 036801          267 TFLIAKTLVRLREMKIESCAMIT-EIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLR-SFYSGYCALNFPSLERLLV  344 (388)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~c~~l~-~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~~~L~~L~l  344 (388)
                      .  ....+++|+.|+++++. ++ .++..            ...+++|+.|+++++. +. .+|..   ..+.+|+.+++
T Consensus       238 ~--~~~~~~~L~~L~Ls~N~-l~g~iP~~------------l~~L~~L~~L~Ls~N~-l~g~iP~~---~~L~~L~~l~l  298 (313)
T d1ogqa_         238 G--KVGLSKNLNGLDLRNNR-IYGTLPQG------------LTQLKFLHSLNVSFNN-LCGEIPQG---GNLQRFDVSAY  298 (313)
T ss_dssp             G--GCCCCTTCCEEECCSSC-CEECCCGG------------GGGCTTCCEEECCSSE-EEEECCCS---TTGGGSCGGGT
T ss_pred             c--ccccccccccccCccCe-ecccCChH------------HhCCCCCCEEECcCCc-ccccCCCc---ccCCCCCHHHh
Confidence            2  23467899999997764 43 33221            3357999999999974 54 67653   57899999999


Q ss_pred             cCCcccccCCC
Q 036801          345 DDCTNMEIFSR  355 (388)
Q Consensus       345 ~~c~~l~~l~~  355 (388)
                      .+++.+...|.
T Consensus       299 ~~N~~l~g~pl  309 (313)
T d1ogqa_         299 ANNKCLCGSPL  309 (313)
T ss_dssp             CSSSEEESTTS
T ss_pred             CCCccccCCCC
Confidence            99877776553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.1e-14  Score=123.11  Aligned_cols=190  Identities=18%  Similarity=0.185  Sum_probs=129.2

Q ss_pred             cccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccC
Q 036801          141 FLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHES  220 (388)
Q Consensus       141 ~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~  220 (388)
                      ..+|.+.-+++++|+++++..-.   ++...+..+++|++|++..|.+   +. +                       ..
T Consensus        23 ~~iP~~lp~~l~~L~Ls~N~i~~---l~~~~f~~l~~L~~L~L~~N~l---~~-l-----------------------~~   72 (266)
T d1p9ag_          23 TALPPDLPKDTTILHLSENLLYT---FSLATLMPYTRLTQLNLDRAEL---TK-L-----------------------QV   72 (266)
T ss_dssp             SSCCSCCCTTCCEEECTTSCCSE---EEGGGGTTCTTCCEEECTTSCC---CE-E-----------------------EC
T ss_pred             CeeCcCcCcCCCEEECcCCcCCC---cCHHHhhccccccccccccccc---cc-c-----------------------cc
Confidence            44555444567777777654322   4444677788888888855566   32 1                       22


Q ss_pred             CCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCc
Q 036801          221 SSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDH  300 (388)
Q Consensus       221 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~  300 (388)
                      +..+++|+.|+++++ .++..+..+..+++|+.|+++++ .+..++.. ....+.++++|++.++ .++.+....     
T Consensus        73 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~-~~~~l~~l~~L~l~~n-~l~~l~~~~-----  143 (266)
T d1p9ag_          73 DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLG-ALRGLGELQELYLKGN-ELKTLPPGL-----  143 (266)
T ss_dssp             CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSS-TTTTCTTCCEEECTTS-CCCCCCTTT-----
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccc-ccceeecc-cccccccccccccccc-ccceecccc-----
Confidence            345678888888887 45666667778888888888865 34444433 2346788888888654 454443221     


Q ss_pred             cccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEeccCCccccccc
Q 036801          301 DAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAWKE  380 (388)
Q Consensus       301 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~  380 (388)
                            ...+++|+.+++.++ ++..++... +..+++|++|+++++ .++.+|.++...++|+.|++.   ++.|.++.
T Consensus       144 ------~~~l~~l~~l~l~~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~---~Np~~CdC  211 (266)
T d1p9ag_         144 ------LTPTPKLEKLSLANN-NLTELPAGL-LNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLH---GNPWLCNC  211 (266)
T ss_dssp             ------TTTCTTCCEEECTTS-CCSCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECC---SCCBCCSG
T ss_pred             ------ccccccchhcccccc-cccccCccc-cccccccceeecccC-CCcccChhHCCCCCCCEEEec---CCCCCCCc
Confidence                  123578888888886 577776653 357899999999985 688999888888999999998   88887654


Q ss_pred             C
Q 036801          381 G  381 (388)
Q Consensus       381 ~  381 (388)
                      +
T Consensus       212 ~  212 (266)
T d1p9ag_         212 E  212 (266)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.3e-15  Score=135.22  Aligned_cols=185  Identities=19%  Similarity=0.204  Sum_probs=117.2

Q ss_pred             cccccceeeccccccccE--eeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceE
Q 036801           32 SFVRLQYIEIEKCHVLEE--LIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMV  109 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~--~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  109 (388)
                      ...+|++|++++|. +..  +...         +..+++|++|++.+| .+.+.....  +..+++|++|++++|..++.
T Consensus        44 ~~~~L~~LdLs~~~-i~~~~l~~l---------~~~c~~L~~L~L~~~-~l~~~~~~~--l~~~~~L~~L~Ls~c~~itd  110 (284)
T d2astb2          44 SPFRVQHMDLSNSV-IEVSTLHGI---------LSQCSKLQNLSLEGL-RLSDPIVNT--LAKNSNLVRLNLSGCSGFSE  110 (284)
T ss_dssp             CCBCCCEEECTTCE-ECHHHHHHH---------HTTBCCCSEEECTTC-BCCHHHHHH--HTTCTTCSEEECTTCBSCCH
T ss_pred             cCCCCCEEECCCCc-cCHHHHHHH---------HHhCCCccccccccc-CCCcHHHHH--HhcCCCCcCccccccccccc
Confidence            56689999999883 322  1111         457899999999987 455433332  45689999999999987763


Q ss_pred             ecccccCCccccccCCccEEEEeecCcccc--ccccchhhccCccEeeccccc-cccccccchhHhhcCCCccEEEE-Ee
Q 036801          110 KFKRTTNDLTKKVFPNLEELIVDAKYITTN--KFLFSKDLLCKLKCLDVEFVD-ELTTILSLDDFLQRFHTLKVLQI-EG  185 (388)
Q Consensus       110 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~--~~~lp~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~L~~L~l-~~  185 (388)
                      .....    +...+++|++|++++|..++.  +........++|+.|+++++. .++ +......+.++++|++|++ +|
T Consensus       111 ~~l~~----l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~-~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         111 FALQT----LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ-KSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             HHHHH----HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC-HHHHHHHHHHCTTCSEEECTTC
T ss_pred             cccch----hhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccc-cccccccccccccccccccccc
Confidence            22111    115688999999988754321  111222335688888888764 333 2222334567888888888 66


Q ss_pred             ccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcccccc-CCCCCCCCCcCEEEEecC
Q 036801          186 YNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINL-VPSSTSFQNLTTLEISHC  259 (388)
Q Consensus       186 ~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c  259 (388)
                      ..+   ++...                      ..+..+++|++|++++|..+++- ...+..+++|+.|++++|
T Consensus       186 ~~i---td~~~----------------------~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         186 VML---KNDCF----------------------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTC---CGGGG----------------------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCC---Cchhh----------------------hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            666   32111                      34445678888888888776532 233456778888888776

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.1e-14  Score=124.85  Aligned_cols=203  Identities=14%  Similarity=0.023  Sum_probs=145.0

Q ss_pred             ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801           35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT  114 (388)
Q Consensus        35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  114 (388)
                      ++|+|+|++| +++.++...        +..+++|++|++++ .++..+....  ...++.++.+.+.....+..++...
T Consensus        33 ~~~~L~Ls~N-~i~~i~~~~--------f~~l~~L~~L~ls~-n~l~~i~~~~--~~~~~~~~~l~~~~~~~~~~l~~~~  100 (284)
T d1ozna_          33 ASQRIFLHGN-RISHVPAAS--------FRACRNLTILWLHS-NVLARIDAAA--FTGLALLEQLDLSDNAQLRSVDPAT  100 (284)
T ss_dssp             TCSEEECTTS-CCCEECTTT--------TTTCTTCCEEECCS-SCCCEECTTT--TTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             CCCEEECcCC-cCCCCCHHH--------hhcccccccccccc-cccccccccc--ccccccccccccccccccccccchh
Confidence            5788999988 577776542        56788899999876 4677776664  5667888888887777777776666


Q ss_pred             cCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCcee
Q 036801          115 TNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEK  194 (388)
Q Consensus       115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  194 (388)
                      +     ..+++|++|++.++... .+........++|+.++++++....   ++...+..+++|+.|++..+.+   +.+
T Consensus       101 ~-----~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~---i~~~~f~~~~~L~~L~l~~N~l---~~l  168 (284)
T d1ozna_         101 F-----HGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA---LPDDTFRDLGNLTHLFLHGNRI---SSV  168 (284)
T ss_dssp             T-----TTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC---CEE
T ss_pred             h-----cccccCCEEecCCcccc-cccccccchhcccchhhhccccccc---cChhHhccccchhhcccccCcc---ccc
Confidence            5     67888999998887652 1122233446788999998865332   5555678889999999966677   332


Q ss_pred             ecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhcc
Q 036801          195 VENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTL  274 (388)
Q Consensus       195 ~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  274 (388)
                       +                    + ..+..+++|+.+++.++....-.+..+..+++|++|+++++ .+..++.. ++..+
T Consensus       169 -~--------------------~-~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~-~~~~~  224 (284)
T d1ozna_         169 -P--------------------E-RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTE-ALAPL  224 (284)
T ss_dssp             -C--------------------T-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHH-HHTTC
T ss_pred             -c--------------------h-hhhccccccchhhhhhccccccChhHhhhhhhccccccccc-cccccccc-ccccc
Confidence             2                    2 55667889999999888554444566788889999999864 56666654 34578


Q ss_pred             CccCEEeeccc
Q 036801          275 VRLREMKIESC  285 (388)
Q Consensus       275 ~~L~~L~l~~c  285 (388)
                      ++|++|++++.
T Consensus       225 ~~L~~L~l~~N  235 (284)
T d1ozna_         225 RALQYLRLNDN  235 (284)
T ss_dssp             TTCCEEECCSS
T ss_pred             cccCEEEecCC
Confidence            88999998763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.4e-14  Score=122.57  Aligned_cols=197  Identities=17%  Similarity=0.089  Sum_probs=139.9

Q ss_pred             CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      ..+...+.++ ++++.+ |..+.     +++++|+|++| .+..++...        +..+++|++|++.++ +++.++.
T Consensus        10 ~~~~~v~C~~-~~L~~i-P~~lp-----~~l~~L~Ls~N-~i~~l~~~~--------f~~l~~L~~L~L~~N-~l~~l~~   72 (266)
T d1p9ag_          10 ASHLEVNCDK-RNLTAL-PPDLP-----KDTTILHLSEN-LLYTFSLAT--------LMPYTRLTQLNLDRA-ELTKLQV   72 (266)
T ss_dssp             TTCCEEECTT-SCCSSC-CSCCC-----TTCCEEECTTS-CCSEEEGGG--------GTTCTTCCEEECTTS-CCCEEEC
T ss_pred             CCCeEEEccC-CCCCee-CcCcC-----cCCCEEECcCC-cCCCcCHHH--------hhccccccccccccc-ccccccc
Confidence            3444555555 456766 54333     36999999998 688777542        567999999999985 6877754


Q ss_pred             CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTI  165 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~  165 (388)
                      .    +.+++|++|+++++ .+...+...      ..+++|+.|+++++... .+.......+.+++.|++.++....  
T Consensus        73 ~----~~l~~L~~L~Ls~N-~l~~~~~~~------~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~--  138 (266)
T d1p9ag_          73 D----GTLPVLGTLDLSHN-QLQSLPLLG------QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT--  138 (266)
T ss_dssp             C----SCCTTCCEEECCSS-CCSSCCCCT------TTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCC--
T ss_pred             c----cccccccccccccc-ccccccccc------ccccccccccccccccc-eeeccccccccccccccccccccce--
Confidence            3    36899999999998 565554443      58899999999987762 1112222346788889888765433  


Q ss_pred             ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801          166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS  245 (388)
Q Consensus       166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~  245 (388)
                       ++...+..+++|+.+++.++++   +.. +                    + ..+..+++|++|+++++ .++.+|..+
T Consensus       139 -l~~~~~~~l~~l~~l~l~~N~l---~~~-~--------------------~-~~~~~l~~L~~L~Ls~N-~L~~lp~~~  191 (266)
T d1p9ag_         139 -LPPGLLTPTPKLEKLSLANNNL---TEL-P--------------------A-GLLNGLENLDTLLLQEN-SLYTIPKGF  191 (266)
T ss_dssp             -CCTTTTTTCTTCCEEECTTSCC---SCC-C--------------------T-TTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred             -eccccccccccchhcccccccc---ccc-C--------------------c-cccccccccceeecccC-CCcccChhH
Confidence             4555677788899998866676   332 1                    1 45667789999999887 477888888


Q ss_pred             CCCCCcCEEEEecCC
Q 036801          246 TSFQNLTTLEISHCN  260 (388)
Q Consensus       246 ~~~~~L~~L~l~~c~  260 (388)
                      ..+++|+.|.+++.+
T Consensus       192 ~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         192 FGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TTTCCCSEEECCSCC
T ss_pred             CCCCCCCEEEecCCC
Confidence            888889999888643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.1e-12  Score=115.93  Aligned_cols=154  Identities=15%  Similarity=0.136  Sum_probs=68.0

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      ++++|+|+++ .++.+++.+|.   ++++|++|+++++ .+..+....        ...++.++.+.+.....+..++..
T Consensus        33 ~~~~L~Ls~N-~i~~i~~~~f~---~l~~L~~L~ls~n-~l~~i~~~~--------~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          33 ASQRIFLHGN-RISHVPAASFR---ACRNLTILWLHSN-VLARIDAAA--------FTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             TCSEEECTTS-CCCEECTTTTT---TCTTCCEEECCSS-CCCEECTTT--------TTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCCEEECcCC-cCCCCCHHHhh---ccccccccccccc-ccccccccc--------ccccccccccccccccccccccch
Confidence            3455555553 34444444444   4555555555554 333333321        223444555544444444444443


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchh---hccCccEeecccccccc
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD---LLCKLKCLDVEFVDELT  163 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~---~l~~L~~L~l~~~~~~~  163 (388)
                      .  +..+++|++|+++++ .+..++...+     ...++|+.+++.++.+    ..++.+   .+++|+.|+++++....
T Consensus       100 ~--~~~l~~L~~L~l~~n-~~~~~~~~~~-----~~~~~L~~l~l~~N~l----~~i~~~~f~~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_         100 T--FHGLGRLHTLHLDRC-GLQELGPGLF-----RGLAALQYLYLQDNAL----QALPDDTFRDLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             T--TTTCTTCCEEECTTS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             h--hcccccCCEEecCCc-cccccccccc-----chhcccchhhhccccc----cccChhHhccccchhhcccccCcccc
Confidence            3  444555555555554 2222222222     3445555555555544    233322   23455555555543211


Q ss_pred             ccccchhHhhcCCCccEEEEEeccC
Q 036801          164 TILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       164 ~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                         ++...+..+++|+.+.+..+.+
T Consensus       168 ---l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         168 ---VPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             ---ECTTTTTTCTTCCEEECCSSCC
T ss_pred             ---cchhhhccccccchhhhhhccc
Confidence               2223444555555555533343

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=1.1e-12  Score=112.12  Aligned_cols=188  Identities=13%  Similarity=0.126  Sum_probs=129.7

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+.+|+.|++.+| +++++. +         +..+++|+.|+++++ .+..+.+    +..+++|+.+++++| .++.++
T Consensus        39 ~l~~L~~L~l~~~-~i~~l~-~---------l~~l~~L~~L~ls~n-~i~~~~~----l~~l~~l~~l~~~~n-~~~~i~  101 (227)
T d1h6ua2          39 DLDGITTLSAFGT-GVTTIE-G---------VQYLNNLIGLELKDN-QITDLAP----LKNLTKITELELSGN-PLKNVS  101 (227)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-T---------GGGCTTCCEEECCSS-CCCCCGG----GTTCCSCCEEECCSC-CCSCCG
T ss_pred             HcCCcCEEECCCC-CCCcch-h---------HhcCCCCcEeecCCc-eeecccc----ccccccccccccccc-cccccc
Confidence            6888888888888 465542 2         567888888888875 4655432    346888888888877 444443


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCC
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLP  191 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  191 (388)
                      .  +     ..+++|+.+.+.++...   ...+....+.++.+.++.+....     ...+..+++|+.|.+.++.+   
T Consensus       102 ~--l-----~~l~~L~~l~l~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~n~~---  163 (227)
T d1h6ua2         102 A--I-----AGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDLNQITN-----ISPLAGLTNLQYLSIGNAQV---  163 (227)
T ss_dssp             G--G-----TTCTTCCEEECTTSCCC---CCGGGTTCTTCCEEECCSSCCCC-----CGGGGGCTTCCEEECCSSCC---
T ss_pred             c--c-----ccccccccccccccccc---ccchhccccchhhhhchhhhhch-----hhhhcccccccccccccccc---
Confidence            2  1     46788888888876652   22233456788888887764332     12456788899998855555   


Q ss_pred             ceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhh
Q 036801          192 KEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIA  271 (388)
Q Consensus       192 ~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  271 (388)
                      ...                        ..+..+++|++|++++| .+++++ .+..+++|++|++++| ++.+++.   .
T Consensus       164 ~~~------------------------~~l~~l~~L~~L~Ls~n-~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~~---l  213 (227)
T d1h6ua2         164 SDL------------------------TPLANLSKLTTLKADDN-KISDIS-PLASLPNLIEVHLKNN-QISDVSP---L  213 (227)
T ss_dssp             CCC------------------------GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECTTS-CCCBCGG---G
T ss_pred             ccc------------------------hhhcccccceecccCCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCCcc---c
Confidence            221                        34567789999999887 566664 3678899999999986 6777764   3


Q ss_pred             hccCccCEEeecc
Q 036801          272 KTLVRLREMKIES  284 (388)
Q Consensus       272 ~~~~~L~~L~l~~  284 (388)
                      +.+++|+.|++++
T Consensus       214 ~~l~~L~~L~lsn  226 (227)
T d1h6ua2         214 ANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCTTCCEEEEEE
T ss_pred             ccCCCCCEEEeeC
Confidence            5788999998853

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.41  E-value=7.3e-12  Score=113.55  Aligned_cols=136  Identities=18%  Similarity=0.071  Sum_probs=89.8

Q ss_pred             cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801            7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG   86 (388)
Q Consensus         7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   86 (388)
                      ++++|+++++ +++.+ |.      ..++|++|+++++ ++++++..            +.+|+.|++.++ .+..++..
T Consensus        39 ~l~~LdLs~~-~L~~l-p~------~~~~L~~L~Ls~N-~l~~lp~~------------~~~L~~L~l~~n-~l~~l~~l   96 (353)
T d1jl5a_          39 QAHELELNNL-GLSSL-PE------LPPHLESLVASCN-SLTELPEL------------PQSLKSLLVDNN-NLKALSDL   96 (353)
T ss_dssp             TCSEEECTTS-CCSCC-CS------CCTTCSEEECCSS-CCSSCCCC------------CTTCCEEECCSS-CCSCCCSC
T ss_pred             CCCEEEeCCC-CCCCC-CC------CCCCCCEEECCCC-CCcccccc------------hhhhhhhhhhhc-ccchhhhh
Confidence            6889999885 56665 53      3567899999887 67776543            567888888864 55555322


Q ss_pred             CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccc
Q 036801           87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTIL  166 (388)
Q Consensus        87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~  166 (388)
                            .+.|++|+++++ .+..++..       ..+++|+.|++.++..    ...+. ....+..+.+....... . 
T Consensus        97 ------p~~L~~L~L~~n-~l~~lp~~-------~~l~~L~~L~l~~~~~----~~~~~-~~~~l~~l~~~~~~~~~-~-  155 (353)
T d1jl5a_          97 ------PPLLEYLGVSNN-QLEKLPEL-------QNSSFLKIIDVDNNSL----KKLPD-LPPSLEFIAAGNNQLEE-L-  155 (353)
T ss_dssp             ------CTTCCEEECCSS-CCSSCCCC-------TTCTTCCEEECCSSCC----SCCCC-CCTTCCEEECCSSCCSS-C-
T ss_pred             ------cccccccccccc-ccccccch-------hhhccceeeccccccc----ccccc-ccccccchhhccccccc-c-
Confidence                  457999999887 56666532       4688999999988765    22222 24566677766554332 1 


Q ss_pred             cchhHhhcCCCccEEEEEeccC
Q 036801          167 SLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       167 ~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                         ..+..++.++.+.+..+..
T Consensus       156 ---~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         156 ---PELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             ---CCCTTCTTCCEEECCSSCC
T ss_pred             ---ccccccccceecccccccc
Confidence               1345677888888844443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=1.2e-12  Score=111.89  Aligned_cols=209  Identities=17%  Similarity=0.172  Sum_probs=144.7

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+.++..+++... .+.+...          ...+.+|+.|.+.++ +++++. +   +..+++|++|++++| .+..+.
T Consensus        17 ~l~~~~~~~l~~~-~~~d~~~----------~~~l~~L~~L~l~~~-~i~~l~-~---l~~l~~L~~L~ls~n-~i~~~~   79 (227)
T d1h6ua2          17 ALANAIKIAAGKS-NVTDTVT----------QADLDGITTLSAFGT-GVTTIE-G---VQYLNNLIGLELKDN-QITDLA   79 (227)
T ss_dssp             HHHHHHHHHTTCS-STTSEEC----------HHHHHTCCEEECTTS-CCCCCT-T---GGGCTTCCEEECCSS-CCCCCG
T ss_pred             HHHHHHHHHhCCC-CcCCcCC----------HHHcCCcCEEECCCC-CCCcch-h---HhcCCCCcEeecCCc-eeeccc
Confidence            4555555666554 3434322          346889999999986 577763 3   567999999999998 455544


Q ss_pred             ccccCCccccccCCccEEEEeecCccccccccc-hhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCC
Q 036801          112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS-KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWL  190 (388)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  190 (388)
                      +  +     ..+++++.+++.++..    ..++ ...+++|+.+.++++....   ..  .+...+.++.+.+.++.+  
T Consensus        80 ~--l-----~~l~~l~~l~~~~n~~----~~i~~l~~l~~L~~l~l~~~~~~~---~~--~~~~~~~~~~l~~~~~~~--  141 (227)
T d1h6ua2          80 P--L-----KNLTKITELELSGNPL----KNVSAIAGLQSIKTLDLTSTQITD---VT--PLAGLSNLQVLYLDLNQI--  141 (227)
T ss_dssp             G--G-----TTCCSCCEEECCSCCC----SCCGGGTTCTTCCEEECTTSCCCC---CG--GGTTCTTCCEEECCSSCC--
T ss_pred             c--c-----cccccccccccccccc----cccccccccccccccccccccccc---cc--hhccccchhhhhchhhhh--
Confidence            3  2     5889999999998766    3333 3568899999998876543   21  355678888888854444  


Q ss_pred             CceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhh
Q 036801          191 PKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLI  270 (388)
Q Consensus       191 ~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  270 (388)
                       ...                        ..+..+++|+.|++.+|. +... ..+..+++|+.|+++++ .+.+++.   
T Consensus       142 -~~~------------------------~~~~~~~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~Ls~n-~l~~l~~---  190 (227)
T d1h6ua2         142 -TNI------------------------SPLAGLTNLQYLSIGNAQ-VSDL-TPLANLSKLTTLKADDN-KISDISP---  190 (227)
T ss_dssp             -CCC------------------------GGGGGCTTCCEEECCSSC-CCCC-GGGTTCTTCCEEECCSS-CCCCCGG---
T ss_pred             -chh------------------------hhhccccccccccccccc-cccc-hhhcccccceecccCCC-ccCCChh---
Confidence             111                        334466889999998874 3333 23678899999999976 6777654   


Q ss_pred             hhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccc
Q 036801          271 AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLN  320 (388)
Q Consensus       271 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  320 (388)
                      ...+++|++|++++| .++++..             ...+++|+.|++++
T Consensus       191 l~~l~~L~~L~Ls~N-~lt~i~~-------------l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         191 LASLPNLIEVHLKNN-QISDVSP-------------LANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGCTTCCEEECTTS-CCCBCGG-------------GTTCTTCCEEEEEE
T ss_pred             hcCCCCCCEEECcCC-cCCCCcc-------------cccCCCCCEEEeeC
Confidence            357899999999887 5777643             12468999998864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.8e-14  Score=124.98  Aligned_cols=213  Identities=16%  Similarity=0.218  Sum_probs=129.7

Q ss_pred             ccCCCccEEEeecCCCceE-ecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccch
Q 036801           91 LEFPSLKELWISRCPGFMV-KFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLD  169 (388)
Q Consensus        91 ~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~  169 (388)
                      ....+|++|++++|. +.. .....+     ..+++|++|+++++.+... .......+++|++|++++|..++ +....
T Consensus        43 ~~~~~L~~LdLs~~~-i~~~~l~~l~-----~~c~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~Ls~c~~it-d~~l~  114 (284)
T d2astb2          43 FSPFRVQHMDLSNSV-IEVSTLHGIL-----SQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFS-EFALQ  114 (284)
T ss_dssp             CCCBCCCEEECTTCE-ECHHHHHHHH-----TTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCC-HHHHH
T ss_pred             ccCCCCCEEECCCCc-cCHHHHHHHH-----HhCCCcccccccccCCCcH-HHHHHhcCCCCcCcccccccccc-ccccc
Confidence            346789999999883 321 111122     5789999999998865311 11122347899999999988776 43333


Q ss_pred             hHhhcCCCccEEEE-EeccCCCCceeecCccccccceeeeeeccceeccccCC-CCCCccceEEecCCcc-ccc--cCCC
Q 036801          170 DFLQRFHTLKVLQI-EGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESS-SIMDNLVILRVSSCHH-LIN--LVPS  244 (388)
Q Consensus       170 ~~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l-~~l~~L~~L~l~~c~~-l~~--l~~~  244 (388)
                      .....+++|+.|++ +|..+   ++.   +..                  ..+ ...++|++|++.+|.. +++  +...
T Consensus       115 ~l~~~~~~L~~L~ls~c~~~---~~~---~~~------------------~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l  170 (284)
T d2astb2         115 TLLSSCSRLDELNLSWCFDF---TEK---HVQ------------------VAVAHVSETITQLNLSGYRKNLQKSDLSTL  170 (284)
T ss_dssp             HHHHHCTTCCEEECCCCTTC---CHH---HHH------------------HHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred             hhhHHHHhcccccccccccc---ccc---cch------------------hhhcccccccchhhhccccccccccccccc
Confidence            35667899999999 77666   221   000                  111 1246889999988743 332  2223


Q ss_pred             CCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccccc
Q 036801          245 STSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESL  324 (388)
Q Consensus       245 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  324 (388)
                      ...+++|+.|++++|..+++..... +..+++|++|++++|+.+++.....           ...+++|+.|++.+|-.-
T Consensus       171 ~~~~~~L~~L~L~~~~~itd~~~~~-l~~~~~L~~L~L~~C~~i~~~~l~~-----------L~~~~~L~~L~l~~~~~d  238 (284)
T d2astb2         171 VRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLE-----------LGEIPTLKTLQVFGIVPD  238 (284)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGG-----------GGGCTTCCEEECTTSSCT
T ss_pred             ccccccccccccccccCCCchhhhh-hcccCcCCEEECCCCCCCChHHHHH-----------HhcCCCCCEEeeeCCCCH
Confidence            3567889999998888777554432 3467889999998888775432211           123578888888887322


Q ss_pred             ceeccCcccccCCCcceEeccCCcccccC
Q 036801          325 RSFYSGYCALNFPSLERLLVDDCTNMEIF  353 (388)
Q Consensus       325 ~~l~~~~~~~~~~~L~~L~l~~c~~l~~l  353 (388)
                      ..+..  ....+|.|+   + +|+.+..+
T Consensus       239 ~~l~~--l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         239 GTLQL--LKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             TCHHH--HHHHSTTSE---E-SCCCSCCT
T ss_pred             HHHHH--HHHhCcccc---c-cCccCCCC
Confidence            22221  123455554   3 45555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-11  Score=106.49  Aligned_cols=105  Identities=13%  Similarity=0.138  Sum_probs=65.4

Q ss_pred             cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801            9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV   88 (388)
Q Consensus         9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   88 (388)
                      +.++.++ .+++.+ |..+     .+++++|+++++ .++.++...        +..+++|++|++.++.....++... 
T Consensus        11 ~~i~c~~-~~l~~i-P~~l-----~~~l~~L~Ls~n-~i~~l~~~~--------f~~l~~L~~L~ls~n~~~~~i~~~~-   73 (242)
T d1xwdc1          11 RVFLCQE-SKVTEI-PSDL-----PRNAIELRFVLT-KLRVIQKGA--------FSGFGDLEKIEISQNDVLEVIEADV-   73 (242)
T ss_dssp             SEEEEES-CSCSSC-CSCS-----CSCCSEEEEESC-CCCEECTTT--------TTTCTTCCEEEEESCTTCCEECSSS-
T ss_pred             CEEEEeC-CCCCCc-CCCC-----CCCCCEEECcCC-cCCccChhH--------hhccchhhhhhhccccccceeeccc-
Confidence            4566665 345555 3322     235788888877 466665531        4567788888887654333344443 


Q ss_pred             ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                       +..+++++++.+..+..+...+...+     ..+++|+++++.++.+
T Consensus        74 -f~~l~~l~~l~~~~~n~l~~~~~~~~-----~~l~~L~~l~l~~~~l  115 (242)
T d1xwdc1          74 -FSNLPKLHEIRIEKANNLLYINPEAF-----QNLPNLQYLLISNTGI  115 (242)
T ss_dssp             -EESCTTCCEEEEECCTTCCEECTTSE-----ECCTTCCEEEEESCCC
T ss_pred             -cccccccccccccccccccccccccc-----cccccccccccchhhh
Confidence             45577778887777666766665555     5677777777777655

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=7.6e-12  Score=105.40  Aligned_cols=164  Identities=16%  Similarity=0.149  Sum_probs=101.7

Q ss_pred             cccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc
Q 036801           65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS  144 (388)
Q Consensus        65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp  144 (388)
                      .+.+|+.|++.++ .++++..    +..+++|++|++++| .++.++..       ..+++|+.|++++|.+    ..++
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~~----l~~l~~L~~L~L~~n-~i~~l~~~-------~~l~~L~~L~l~~n~i----~~l~  106 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQG----IQYLPNVTKLFLNGN-KLTDIKPL-------ANLKNLGWLFLDENKV----KDLS  106 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCTT----GGGCTTCCEEECCSS-CCCCCGGG-------TTCTTCCEEECCSSCC----CCGG
T ss_pred             HhcCccEEECcCC-CCCCchh----HhhCCCCCEEeCCCc-cccCcccc-------ccCccccccccccccc----cccc
Confidence            3566777777664 4555431    345777777777776 45554432       3677777777777665    3333


Q ss_pred             -hhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCC
Q 036801          145 -KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSI  223 (388)
Q Consensus       145 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~  223 (388)
                       ...+++|+.|+++++....   ++  .+..++.++.+.+..+.+   ...                        .....
T Consensus       107 ~l~~l~~L~~L~l~~~~~~~---~~--~l~~l~~l~~l~~~~n~l---~~~------------------------~~~~~  154 (210)
T d1h6ta2         107 SLKDLKKLKSLSLEHNGISD---IN--GLVHLPQLESLYLGNNKI---TDI------------------------TVLSR  154 (210)
T ss_dssp             GGTTCTTCCEEECTTSCCCC---CG--GGGGCTTCCEEECCSSCC---CCC------------------------GGGGG
T ss_pred             cccccccccccccccccccc---cc--cccccccccccccccccc---ccc------------------------ccccc
Confidence             3446777788777765332   22  456677788777755555   211                        22335


Q ss_pred             CCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeec
Q 036801          224 MDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIE  283 (388)
Q Consensus       224 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~  283 (388)
                      +++|+.++++++ .++.++ .+..+++|+.|+++++ .+.+++.   +..+++|+.|+++
T Consensus       155 l~~L~~l~l~~n-~l~~i~-~l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         155 LTKLDTLSLEDN-QISDIV-PLAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELF  208 (210)
T ss_dssp             CTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEE
T ss_pred             cccccccccccc-cccccc-cccCCCCCCEEECCCC-CCCCChh---hcCCCCCCEEEcc
Confidence            677888888777 344443 3567778888888765 5666643   3467788888775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.4e-11  Score=102.75  Aligned_cols=58  Identities=21%  Similarity=0.227  Sum_probs=27.3

Q ss_pred             ccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEee
Q 036801           68 RLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDA  133 (388)
Q Consensus        68 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~  133 (388)
                      ++++|++.+ ++++.++...  +..+++|++|+++++.....++...+     ..+++++++.+..
T Consensus        30 ~l~~L~Ls~-n~i~~l~~~~--f~~l~~L~~L~ls~n~~~~~i~~~~f-----~~l~~l~~l~~~~   87 (242)
T d1xwdc1          30 NAIELRFVL-TKLRVIQKGA--FSGFGDLEKIEISQNDVLEVIEADVF-----SNLPKLHEIRIEK   87 (242)
T ss_dssp             CCSEEEEES-CCCCEECTTT--TTTCTTCCEEEEESCTTCCEECSSSE-----ESCTTCCEEEEEC
T ss_pred             CCCEEECcC-CcCCccChhH--hhccchhhhhhhccccccceeecccc-----ccccccccccccc
Confidence            455555554 2455544432  34455555555555544333333333     3445555554443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.28  E-value=9.4e-12  Score=104.79  Aligned_cols=165  Identities=16%  Similarity=0.184  Sum_probs=110.7

Q ss_pred             CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801            5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS   84 (388)
Q Consensus         5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~   84 (388)
                      +.+|++|++++| .++.+  ..+.   .+++|++|++++| .+++++.          +..+++|+.|++.++ ++++++
T Consensus        45 L~~L~~L~l~~~-~i~~l--~~l~---~l~~L~~L~L~~n-~i~~l~~----------~~~l~~L~~L~l~~n-~i~~l~  106 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSV--QGIQ---YLPNVTKLFLNGN-KLTDIKP----------LANLKNLGWLFLDEN-KVKDLS  106 (210)
T ss_dssp             HHTCCEEECTTS-CCCCC--TTGG---GCTTCCEEECCSS-CCCCCGG----------GTTCTTCCEEECCSS-CCCCGG
T ss_pred             hcCccEEECcCC-CCCCc--hhHh---hCCCCCEEeCCCc-cccCccc----------cccCccccccccccc-cccccc
Confidence            567888888875 45544  2356   7888999999887 4555432          456888888888874 577664


Q ss_pred             CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccc
Q 036801           85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTT  164 (388)
Q Consensus        85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~  164 (388)
                      .    ...+++|+.|++.+|. +..++.  +     ..+++++.+.+.++.+.   ..-+...+++|+.++++++.... 
T Consensus       107 ~----l~~l~~L~~L~l~~~~-~~~~~~--l-----~~l~~l~~l~~~~n~l~---~~~~~~~l~~L~~l~l~~n~l~~-  170 (210)
T d1h6ta2         107 S----LKDLKKLKSLSLEHNG-ISDING--L-----VHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISD-  170 (210)
T ss_dssp             G----GTTCTTCCEEECTTSC-CCCCGG--G-----GGCTTCCEEECCSSCCC---CCGGGGGCTTCSEEECCSSCCCC-
T ss_pred             c----cccccccccccccccc-cccccc--c-----ccccccccccccccccc---ccccccccccccccccccccccc-
Confidence            2    3468888999888874 333322  1     47788888888887662   11233457888888888875332 


Q ss_pred             cccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecC
Q 036801          165 ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSS  234 (388)
Q Consensus       165 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~  234 (388)
                        ++  .+..+++|++|+++++.+   +++                        ..+..+++|+.|+|++
T Consensus       171 --i~--~l~~l~~L~~L~Ls~N~i---~~l------------------------~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         171 --IV--PLAGLTKLQNLYLSKNHI---SDL------------------------RALAGLKNLDVLELFS  209 (210)
T ss_dssp             --CG--GGTTCTTCCEEECCSSCC---CBC------------------------GGGTTCTTCSEEEEEE
T ss_pred             --cc--cccCCCCCCEEECCCCCC---CCC------------------------hhhcCCCCCCEEEccC
Confidence              22  367788889888866666   321                        3455678888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.25  E-value=2.2e-11  Score=101.54  Aligned_cols=161  Identities=17%  Similarity=0.186  Sum_probs=102.9

Q ss_pred             cccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc
Q 036801           65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS  144 (388)
Q Consensus        65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp  144 (388)
                      .++++++|++.++ .+.++. +   +..+++|++|++++| .++.+++  +     ..+++|++|++++|..    ..++
T Consensus        38 ~l~~l~~L~l~~~-~i~~l~-~---l~~l~nL~~L~Ls~N-~l~~~~~--l-----~~l~~L~~L~l~~n~~----~~~~  100 (199)
T d2omxa2          38 DLDQVTTLQADRL-GIKSID-G---VEYLNNLTQINFSNN-QLTDITP--L-----KNLTKLVDILMNNNQI----ADIT  100 (199)
T ss_dssp             HHTTCCEEECTTS-CCCCCT-T---GGGCTTCCEEECCSS-CCCCCGG--G-----TTCTTCCEEECCSSCC----CCCG
T ss_pred             HhcCCCEEECCCC-CCCCcc-c---cccCCCcCcCccccc-cccCccc--c-----cCCccccccccccccc----cccc
Confidence            4667777777764 455542 1   345777777777776 5555443  2     4677777777777665    2332


Q ss_pred             -hhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCC
Q 036801          145 -KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSI  223 (388)
Q Consensus       145 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~  223 (388)
                       ...+++|+.|+++++....   .  ..+..+++|+.|++.++.+   ...                        ..+..
T Consensus       101 ~l~~l~~L~~L~l~~~~~~~---~--~~~~~l~~L~~L~l~~n~l---~~~------------------------~~l~~  148 (199)
T d2omxa2         101 PLANLTNLTGLTLFNNQITD---I--DPLKNLTNLNRLELSSNTI---SDI------------------------SALSG  148 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCC---C--GGGTTCTTCSEEECCSSCC---CCC------------------------GGGTT
T ss_pred             cccccccccccccccccccc---c--cccchhhhhHHhhhhhhhh---ccc------------------------ccccc
Confidence             4557788888887765433   1  1456778888888855555   211                        34456


Q ss_pred             CCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEE
Q 036801          224 MDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREM  280 (388)
Q Consensus       224 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L  280 (388)
                      +++|+.|++.+| .+++++ .+..+++|++|+++++ .+.+++.   ...+++|++|
T Consensus       149 ~~~L~~L~l~~n-~l~~l~-~l~~l~~L~~L~ls~N-~i~~i~~---l~~L~~L~~L  199 (199)
T d2omxa2         149 LTSLQQLNFSSN-QVTDLK-PLANLTTLERLDISSN-KVSDISV---LAKLTNLESL  199 (199)
T ss_dssp             CTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEE
T ss_pred             cccccccccccc-cccCCc-cccCCCCCCEEECCCC-CCCCCcc---ccCCCCCCcC
Confidence            688888888876 455553 3667888888888876 5766653   2467777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=3.1e-11  Score=100.65  Aligned_cols=146  Identities=16%  Similarity=0.129  Sum_probs=103.2

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      .++++++|+++++ +++++  ..+.   .+++|++|++++| .+..++.          +..+++|+.|++.++ .+..+
T Consensus        38 ~l~~l~~L~l~~~-~i~~l--~~l~---~l~nL~~L~Ls~N-~l~~~~~----------l~~l~~L~~L~l~~n-~~~~~   99 (199)
T d2omxa2          38 DLDQVTTLQADRL-GIKSI--DGVE---YLNNLTQINFSNN-QLTDITP----------LKNLTKLVDILMNNN-QIADI   99 (199)
T ss_dssp             HHTTCCEEECTTS-CCCCC--TTGG---GCTTCCEEECCSS-CCCCCGG----------GTTCTTCCEEECCSS-CCCCC
T ss_pred             HhcCCCEEECCCC-CCCCc--cccc---cCCCcCcCccccc-cccCccc----------ccCCccccccccccc-ccccc
Confidence            3678899999886 45554  3466   7899999999998 5655432          567889999999875 45544


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc-hhhccCccEeeccccccc
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS-KDLLCKLKCLDVEFVDEL  162 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~  162 (388)
                      +.    ...+++|+.|++.+|.... .+.  +     ..+++|+.|++++|.+    ..++ ...+++|+.|++.++...
T Consensus       100 ~~----l~~l~~L~~L~l~~~~~~~-~~~--~-----~~l~~L~~L~l~~n~l----~~~~~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         100 TP----LANLTNLTGLTLFNNQITD-IDP--L-----KNLTNLNRLELSSNTI----SDISALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             GG----GTTCTTCSEEECCSSCCCC-CGG--G-----TTCTTCSEEECCSSCC----CCCGGGTTCTTCSEEECCSSCCC
T ss_pred             cc----ccccccccccccccccccc-ccc--c-----chhhhhHHhhhhhhhh----ccccccccccccccccccccccc
Confidence            32    3468999999998874432 221  1     4788999999988876    3343 456789999999887533


Q ss_pred             cccccchhHhhcCCCccEEEEEeccC
Q 036801          163 TTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       163 ~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                      .   ++  .+..+++|+.|+++.+.+
T Consensus       164 ~---l~--~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         164 D---LK--PLANLTTLERLDISSNKV  184 (199)
T ss_dssp             C---CG--GGTTCTTCCEEECCSSCC
T ss_pred             C---Cc--cccCCCCCCEEECCCCCC
Confidence            2   22  467889999999955667

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.20  E-value=4.2e-10  Score=101.61  Aligned_cols=276  Identities=16%  Similarity=0.090  Sum_probs=140.8

Q ss_pred             CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801            5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS   84 (388)
Q Consensus         5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~   84 (388)
                      .++|++|++++ +.++.+ |.      .+.+|+.|++.++ ++..++..            .+.|++|++.++ .+..++
T Consensus        57 ~~~L~~L~Ls~-N~l~~l-p~------~~~~L~~L~l~~n-~l~~l~~l------------p~~L~~L~L~~n-~l~~lp  114 (353)
T d1jl5a_          57 PPHLESLVASC-NSLTEL-PE------LPQSLKSLLVDNN-NLKALSDL------------PPLLEYLGVSNN-QLEKLP  114 (353)
T ss_dssp             CTTCSEEECCS-SCCSSC-CC------CCTTCCEEECCSS-CCSCCCSC------------CTTCCEEECCSS-CCSSCC
T ss_pred             CCCCCEEECCC-CCCccc-cc------chhhhhhhhhhhc-ccchhhhh------------cccccccccccc-cccccc
Confidence            47899999997 467765 54      4567999999987 45543221            246999999874 677775


Q ss_pred             CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccc
Q 036801           85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTT  164 (388)
Q Consensus        85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~  164 (388)
                      .    .+.+++|+.|+++++. +...+         ...+.+..+.+..+...   .......++.++.+++..+.....
T Consensus       115 ~----~~~l~~L~~L~l~~~~-~~~~~---------~~~~~l~~l~~~~~~~~---~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         115 E----LQNSSFLKIIDVDNNS-LKKLP---------DLPPSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             C----CTTCTTCCEEECCSSC-CSCCC---------CCCTTCCEEECCSSCCS---SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             c----hhhhccceeecccccc-ccccc---------cccccccchhhcccccc---ccccccccccceeccccccccccc
Confidence            3    3468999999998873 33222         22344445554443221   111223344555555444322110


Q ss_pred             -----------------cccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCc
Q 036801          165 -----------------ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDN  226 (388)
Q Consensus       165 -----------------~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~  226 (388)
                                       ..++  ....++.|+.+.+..+..   .. ++.. ..++....+.. .+..     .....+.
T Consensus       178 ~~~~~~~~~l~~~~~~~~~~~--~~~~l~~L~~l~l~~n~~---~~-~~~~-~~~l~~~~~~~~~~~~-----~~~~~~~  245 (353)
T d1jl5a_         178 PDLPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLL---KT-LPDL-PPSLEALNVRDNYLTD-----LPELPQS  245 (353)
T ss_dssp             CCCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCC---SS-CCSC-CTTCCEEECCSSCCSC-----CCCCCTT
T ss_pred             ccccccccccccccccccccc--cccccccccccccccccc---cc-cccc-cccccccccccccccc-----ccccccc
Confidence                             0011  123455666666532332   11 1100 00000000000 0000     0001122


Q ss_pred             cceEEecCCccccccCCCCCCC-CCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCcccccc
Q 036801          227 LVILRVSSCHHLINLVPSSTSF-QNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKD  305 (388)
Q Consensus       227 L~~L~l~~c~~l~~l~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~  305 (388)
                      +....+..+.. ..+    ..+ .......+.. ..+..++     ..+++|++|++++| .++++..            
T Consensus       246 l~~~~~~~~~~-~~l----~~l~~~~~~~~~~~-~~~~~~~-----~~~~~L~~L~Ls~N-~l~~lp~------------  301 (353)
T d1jl5a_         246 LTFLDVSENIF-SGL----SELPPNLYYLNASS-NEIRSLC-----DLPPSLEELNVSNN-KLIELPA------------  301 (353)
T ss_dssp             CCEEECCSSCC-SEE----SCCCTTCCEEECCS-SCCSEEC-----CCCTTCCEEECCSS-CCSCCCC------------
T ss_pred             ccccccccccc-ccc----ccccchhccccccc-Ccccccc-----ccCCCCCEEECCCC-ccCcccc------------
Confidence            22222221100 000    001 1122222221 1222222     24678999999776 4555531            


Q ss_pred             ceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEE
Q 036801          306 EVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQL  368 (388)
Q Consensus       306 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l  368 (388)
                         .+++|+.|++.++ .+++++..     +++|++|++++|+ ++.+|...   ++|+.+.+
T Consensus       302 ---~~~~L~~L~L~~N-~L~~l~~~-----~~~L~~L~L~~N~-L~~lp~~~---~~L~~L~~  351 (353)
T d1jl5a_         302 ---LPPRLERLIASFN-HLAEVPEL-----PQNLKQLHVEYNP-LREFPDIP---ESVEDLRM  351 (353)
T ss_dssp             ---CCTTCCEEECCSS-CCSCCCCC-----CTTCCEEECCSSC-CSSCCCCC---TTCCEEEC
T ss_pred             ---ccCCCCEEECCCC-cCCccccc-----cCCCCEEECcCCc-CCCCCccc---cccCeeEC
Confidence               2589999999886 57777643     4789999999975 88998743   46777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.6e-10  Score=91.43  Aligned_cols=84  Identities=15%  Similarity=0.046  Sum_probs=33.7

Q ss_pred             cCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccc-cchhhccCccEeeccccccccccccchh
Q 036801           92 EFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL-FSKDLLCKLKCLDVEFVDELTTILSLDD  170 (388)
Q Consensus        92 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~-lp~~~l~~L~~L~l~~~~~~~~~~~~~~  170 (388)
                      .+++|++|++++| .++.++...+     ..+++|++|++++|.+. .+.. -+...+++|++|+++++...........
T Consensus        61 ~l~~L~~L~ls~N-~i~~l~~~~~-----~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~  133 (162)
T d1a9na_          61 LLRRLKTLLVNNN-RICRIGEGLD-----QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY  133 (162)
T ss_dssp             CCSSCCEEECCSS-CCCEECSCHH-----HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHH
T ss_pred             cCcchhhhhcccc-cccCCCcccc-----ccccccccceecccccc-ccccccccccccccchhhcCCCccccccchHHH
Confidence            3444555555444 3333333322     24445555555444431 0011 1122345555555555432210001112


Q ss_pred             HhhcCCCccEEE
Q 036801          171 FLQRFHTLKVLQ  182 (388)
Q Consensus       171 ~~~~l~~L~~L~  182 (388)
                      .+..+++|+.|+
T Consensus       134 ~i~~lp~L~~LD  145 (162)
T d1a9na_         134 VIYKVPQVRVLD  145 (162)
T ss_dssp             HHHHCTTCSEET
T ss_pred             HHHHCCCcCeeC
Confidence            445556666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=5.2e-10  Score=89.68  Aligned_cols=127  Identities=13%  Similarity=0.130  Sum_probs=96.7

Q ss_pred             CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF   83 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   83 (388)
                      +..++++|++++| +++.+ +..+.   .+++|+.|++++| .+.++..          +..+++|+.|+++++ ++..+
T Consensus        16 n~~~lr~L~L~~n-~I~~i-~~~~~---~l~~L~~L~Ls~N-~i~~l~~----------~~~l~~L~~L~ls~N-~i~~l   78 (162)
T d1a9na_          16 NAVRDRELDLRGY-KIPVI-ENLGA---TLDQFDAIDFSDN-EIRKLDG----------FPLLRRLKTLLVNNN-RICRI   78 (162)
T ss_dssp             CTTSCEEEECTTS-CCCSC-CCGGG---GTTCCSEEECCSS-CCCEECC----------CCCCSSCCEEECCSS-CCCEE
T ss_pred             CcCcCcEEECCCC-CCCcc-Ccccc---ccccCCEEECCCC-CCCccCC----------cccCcchhhhhcccc-cccCC
Confidence            5668999999995 56766 44344   7999999999999 5777632          567999999999985 68888


Q ss_pred             cCCCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCccccccccc------hhhccCccEeec
Q 036801           84 STGDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLFS------KDLLCKLKCLDV  156 (388)
Q Consensus        84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp------~~~l~~L~~L~l  156 (388)
                      +...  ...+++|++|++++| .+..++. ..+     ..+++|++|++.+|.+    ...|      ...+|+|+.|+-
T Consensus        79 ~~~~--~~~l~~L~~L~L~~N-~i~~~~~l~~l-----~~l~~L~~L~l~~N~i----~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          79 GEGL--DQALPDLTELILTNN-SLVELGDLDPL-----ASLKSLTYLCILRNPV----TNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CSCH--HHHCTTCCEEECCSC-CCCCGGGGGGG-----GGCTTCCEEECCSSGG----GGSTTHHHHHHHHCTTCSEETT
T ss_pred             Cccc--cccccccccceeccc-ccccccccccc-----ccccccchhhcCCCcc----ccccchHHHHHHHCCCcCeeCC
Confidence            7763  567999999999998 5555543 222     5789999999999877    3333      356899999986


Q ss_pred             ccc
Q 036801          157 EFV  159 (388)
Q Consensus       157 ~~~  159 (388)
                      ...
T Consensus       147 ~~i  149 (162)
T d1a9na_         147 QKV  149 (162)
T ss_dssp             EEC
T ss_pred             CCC
Confidence            543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=3.4e-09  Score=80.69  Aligned_cols=101  Identities=16%  Similarity=0.216  Sum_probs=62.1

Q ss_pred             cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801            9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV   88 (388)
Q Consensus         9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   88 (388)
                      |.|+++++ .++.+ + .++   ++++|++|++++| .++.++..         +..+++|+.|++.+ +.++.++.   
T Consensus         1 R~L~Ls~n-~l~~l-~-~l~---~l~~L~~L~ls~N-~l~~lp~~---------~~~l~~L~~L~l~~-N~i~~l~~---   60 (124)
T d1dcea3           1 RVLHLAHK-DLTVL-C-HLE---QLLLVTHLDLSHN-RLRALPPA---------LAALRCLEVLQASD-NALENVDG---   60 (124)
T ss_dssp             SEEECTTS-CCSSC-C-CGG---GGTTCCEEECCSS-CCCCCCGG---------GGGCTTCCEEECCS-SCCCCCGG---
T ss_pred             CEEEcCCC-CCCCC-c-ccc---cCCCCCEEECCCC-ccCcchhh---------hhhhhccccccccc-ccccccCc---
Confidence            46777774 45544 2 366   7888888888877 56666544         55677788888776 45666532   


Q ss_pred             ccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCc
Q 036801           89 HMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        89 ~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                       +..+++|++|+++++ .+..++. ..+     ..+++|+.|++++|.+
T Consensus        61 -~~~l~~L~~L~l~~N-~i~~~~~~~~l-----~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          61 -VANLPRLQELLLCNN-RLQQSAAIQPL-----VSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             -GTTCSSCCEEECCSS-CCCSSSTTGGG-----GGCTTCCEEECTTSGG
T ss_pred             -cccccccCeEECCCC-ccCCCCCchhh-----cCCCCCCEEECCCCcC
Confidence             345777777777766 4443332 111     3556666666665544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.81  E-value=6.2e-09  Score=85.76  Aligned_cols=126  Identities=13%  Similarity=0.050  Sum_probs=93.1

Q ss_pred             ccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCC
Q 036801            8 LTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGD   87 (388)
Q Consensus         8 L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   87 (388)
                      .+.++.++ ++++.+ |..+     .+++++|+|++| .+.......       .+..+++|+.|++.+ +.+..++...
T Consensus        10 ~~~v~Cs~-~~L~~i-P~~l-----p~~l~~L~Ls~N-~i~~~~~~~-------~f~~l~~L~~L~L~~-N~i~~~~~~~   73 (192)
T d1w8aa_          10 GTTVDCTG-RGLKEI-PRDI-----PLHTTELLLNDN-ELGRISSDG-------LFGRLPHLVKLELKR-NQLTGIEPNA   73 (192)
T ss_dssp             TTEEECTT-SCCSSC-CSCC-----CTTCSEEECCSC-CCCSBCCSC-------SGGGCTTCCEEECCS-SCCCCBCTTT
T ss_pred             CCEEEEeC-CCcCcc-CCCC-----CCCCCEEEeCCC-CCccccccc-------ccCCCceEeeeeccc-cccccccccc
Confidence            45667765 566766 4432     246899999998 454433221       156789999999987 4677777765


Q ss_pred             cccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchh---hccCccEeecccccc
Q 036801           88 VHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD---LLCKLKCLDVEFVDE  161 (388)
Q Consensus        88 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~---~l~~L~~L~l~~~~~  161 (388)
                        +..+++|++|+++++ .++.+++..+     ..+++|++|++++|.+    ..++.+   .+++|++++++++..
T Consensus        74 --~~~~~~L~~L~Ls~N-~l~~l~~~~F-----~~l~~L~~L~L~~N~l----~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          74 --FEGASHIQELQLGEN-KIKEISNKMF-----LGLHQLKTLNLYDNQI----SCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             --TTTCTTCCEEECCSC-CCCEECSSSS-----TTCTTCCEEECCSSCC----CEECTTSSTTCTTCCEEECTTCCB
T ss_pred             --cccccccceeeeccc-cccccCHHHH-----hCCCcccccccCCccc----cccCHHHhcCCccccccccccccc
Confidence              777899999999988 7888888877     6899999999999987    555554   467999999988653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=5.7e-09  Score=79.39  Aligned_cols=121  Identities=11%  Similarity=0.063  Sum_probs=87.9

Q ss_pred             ceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccC
Q 036801           37 QYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTN  116 (388)
Q Consensus        37 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  116 (388)
                      |.|+++++ +++.++.          +..+++|++|++++ ++++.++..   +..+++|+.|+++++ .++.++.  + 
T Consensus         1 R~L~Ls~n-~l~~l~~----------l~~l~~L~~L~ls~-N~l~~lp~~---~~~l~~L~~L~l~~N-~i~~l~~--~-   61 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH----------LEQLLLVTHLDLSH-NRLRALPPA---LAALRCLEVLQASDN-ALENVDG--V-   61 (124)
T ss_dssp             SEEECTTS-CCSSCCC----------GGGGTTCCEEECCS-SCCCCCCGG---GGGCTTCCEEECCSS-CCCCCGG--G-
T ss_pred             CEEEcCCC-CCCCCcc----------cccCCCCCEEECCC-CccCcchhh---hhhhhcccccccccc-cccccCc--c-
Confidence            57888888 5665532          66789999999986 578888754   567999999999997 6776653  2 


Q ss_pred             CccccccCCccEEEEeecCccccccc-cchhhccCccEeeccccccccccccchhHhhcCCCccEE
Q 036801          117 DLTKKVFPNLEELIVDAKYITTNKFL-FSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVL  181 (388)
Q Consensus       117 ~~~~~~l~~L~~L~i~~~~~~~~~~~-lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L  181 (388)
                          ..+++|++|++++|.+.. +.. .+...+++|+.|+++++........+......+|+|+.+
T Consensus        62 ----~~l~~L~~L~l~~N~i~~-~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          62 ----ANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ----TTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ----ccccccCeEECCCCccCC-CCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence                588999999999988731 111 123568899999999876433123445567778888875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.73  E-value=2.5e-08  Score=81.97  Aligned_cols=106  Identities=18%  Similarity=0.134  Sum_probs=61.7

Q ss_pred             cccceEeccccccccc-ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch
Q 036801           67 PRLQYLKMYDLEKLTS-FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK  145 (388)
Q Consensus        67 ~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~  145 (388)
                      +++++|++++ +.+.. .....  +..+++|++|+++++ .+..++...+     ..+++|++|++++|.+    ..++.
T Consensus        29 ~~l~~L~Ls~-N~i~~~~~~~~--f~~l~~L~~L~L~~N-~i~~~~~~~~-----~~~~~L~~L~Ls~N~l----~~l~~   95 (192)
T d1w8aa_          29 LHTTELLLND-NELGRISSDGL--FGRLPHLVKLELKRN-QLTGIEPNAF-----EGASHIQELQLGENKI----KEISN   95 (192)
T ss_dssp             TTCSEEECCS-CCCCSBCCSCS--GGGCTTCCEEECCSS-CCCCBCTTTT-----TTCTTCCEEECCSCCC----CEECS
T ss_pred             CCCCEEEeCC-CCCcccccccc--cCCCceEeeeecccc-cccccccccc-----ccccccceeeeccccc----cccCH
Confidence            4667777765 35544 33332  455677777777666 4444444444     4667777777777665    34443


Q ss_pred             ---hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801          146 ---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       146 ---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                         ..+++|++|+++++....   ++...+..+++|++++++.|.+
T Consensus        96 ~~F~~l~~L~~L~L~~N~l~~---i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          96 KMFLGLHQLKTLNLYDNQISC---VMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SSSTTCTTCCEEECCSSCCCE---ECTTSSTTCTTCCEEECTTCCB
T ss_pred             HHHhCCCcccccccCCccccc---cCHHHhcCCccccccccccccc
Confidence               235677777777654322   4444566677777777744444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.54  E-value=2.3e-09  Score=88.88  Aligned_cols=147  Identities=16%  Similarity=0.096  Sum_probs=91.3

Q ss_pred             cccEEeEecC-CCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801            7 NLTHLTFYNC-MNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST   85 (388)
Q Consensus         7 ~L~~L~l~~~-~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   85 (388)
                      .++.+++++. ..++.+ +..+.   .+++|++|++++| +++.++ .         +..+++|+.|+++++ .+.+++.
T Consensus        24 ~~~~~~l~~~~~~i~~l-~~sl~---~L~~L~~L~Ls~n-~I~~i~-~---------l~~l~~L~~L~Ls~N-~i~~i~~   87 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKM-DATLS---TLKACKHLALSTN-NIEKIS-S---------LSGMENLRILSLGRN-LIKKIEN   87 (198)
T ss_dssp             TCSCEECCBCCTTCCCC-HHHHH---HTTTCCEEECSEE-EESCCC-C---------HHHHTTCCEEECCEE-EECSCSS
T ss_pred             ccceeeeecccCchhhh-hhHHh---cccccceeECccc-CCCCcc-c---------ccCCccccChhhccc-ccccccc
Confidence            3445555542 233333 44566   7888999999887 466543 2         567888999999874 5766653


Q ss_pred             CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccccc-chhhccCccEeeccccccccc
Q 036801           86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF-SKDLLCKLKCLDVEFVDELTT  164 (388)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l-p~~~l~~L~~L~l~~~~~~~~  164 (388)
                      .   ...+++|++|++++| .++.++.  +     ..+++|+.|++++|.+. .+..+ ....+++|+.|+++++.... 
T Consensus        88 ~---~~~~~~L~~L~l~~N-~i~~l~~--~-----~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~-  154 (198)
T d1m9la_          88 L---DAVADTLEELWISYN-QIASLSG--I-----EKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYN-  154 (198)
T ss_dssp             H---HHHHHHCCEEECSEE-ECCCHHH--H-----HHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHH-
T ss_pred             c---ccccccccccccccc-ccccccc--c-----cccccccccccccchhc-cccccccccCCCccceeecCCCcccc-
Confidence            2   334678889988887 5554432  1     47788889998888762 11111 23457888888888765322 


Q ss_pred             ccc--------chhHhhcCCCccEEE
Q 036801          165 ILS--------LDDFLQRFHTLKVLQ  182 (388)
Q Consensus       165 ~~~--------~~~~~~~l~~L~~L~  182 (388)
                      ...        ....+..+++|+.|+
T Consensus       155 ~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         155 DYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             CcccccchhhHHHHHHHHCCCcCEeC
Confidence            100        012366788888765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.9e-07  Score=73.75  Aligned_cols=109  Identities=17%  Similarity=0.048  Sum_probs=71.1

Q ss_pred             CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801            5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS   84 (388)
Q Consensus         5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~   84 (388)
                      +...+.++.++.. ..+. |..+.   .+++|++|++.++..++.++...        +..+++|+.|++++ ++++.++
T Consensus         7 c~~~~~l~c~~~~-~~~~-p~~l~---~l~~l~~L~l~~n~~l~~i~~~~--------f~~l~~L~~L~Ls~-N~l~~i~   72 (156)
T d2ifga3           7 PHGSSGLRCTRDG-ALDS-LHHLP---GAENLTELYIENQQHLQHLELRD--------LRGLGELRNLTIVK-SGLRFVA   72 (156)
T ss_dssp             CSSSSCEECCSSC-CCTT-TTTSC---SCSCCSEEECCSCSSCCEECGGG--------SCSCCCCSEEECCS-SCCCEEC
T ss_pred             cCCCCeEEecCCC-CccC-ccccc---CccccCeeecCCCccccccCchh--------hccccccCcceeec-cccCCcc
Confidence            3445566666643 3333 55566   67788888887765677766542        45677888888876 4677776


Q ss_pred             CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801           85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI  136 (388)
Q Consensus        85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  136 (388)
                      +..  +..+++|++|+++++ .++.++...+      ...+|++|++++|..
T Consensus        73 ~~~--f~~l~~L~~L~Ls~N-~l~~l~~~~~------~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          73 PDA--FHFTPRLSRLNLSFN-ALESLSWKTV------QGLSLQELVLSGNPL  115 (156)
T ss_dssp             TTG--GGSCSCCCEEECCSS-CCSCCCSTTT------CSCCCCEEECCSSCC
T ss_pred             ccc--ccccccccceeccCC-CCcccChhhh------ccccccccccCCCcc
Confidence            664  566778888888777 5666666554      233577777776654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.48  E-value=1.8e-09  Score=89.49  Aligned_cols=129  Identities=16%  Similarity=0.162  Sum_probs=91.6

Q ss_pred             cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801            3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS   82 (388)
Q Consensus         3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   82 (388)
                      +.+++|++|+++++ .++++  +.+.   ++++|++|++++| .+..++..         ...+++|+.|++.++ .+..
T Consensus        45 ~~L~~L~~L~Ls~n-~I~~i--~~l~---~l~~L~~L~Ls~N-~i~~i~~~---------~~~~~~L~~L~l~~N-~i~~  107 (198)
T d1m9la_          45 STLKACKHLALSTN-NIEKI--SSLS---GMENLRILSLGRN-LIKKIENL---------DAVADTLEELWISYN-QIAS  107 (198)
T ss_dssp             HHTTTCCEEECSEE-EESCC--CCHH---HHTTCCEEECCEE-EECSCSSH---------HHHHHHCCEEECSEE-ECCC
T ss_pred             hcccccceeECccc-CCCCc--cccc---CCccccChhhccc-cccccccc---------ccccccccccccccc-cccc
Confidence            46889999999985 57765  3477   8999999999998 56665433         334678999999874 6776


Q ss_pred             ccCCCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCcccccccc---------chhhccCcc
Q 036801           83 FSTGDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLF---------SKDLLCKLK  152 (388)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l---------p~~~l~~L~  152 (388)
                      +..    +..+++|+.|++++| .++.++. ..+     ..+++|+.|++++|.+.......         ....+|+|+
T Consensus       108 l~~----~~~l~~L~~L~L~~N-~i~~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~  177 (198)
T d1m9la_         108 LSG----IEKLVNLRVLYMSNN-KITNWGEIDKL-----AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             HHH----HHHHHHSSEEEESEE-ECCCHHHHHHH-----TTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCC
T ss_pred             ccc----ccccccccccccccc-hhccccccccc-----cCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcC
Confidence            632    446899999999988 5554432 122     57899999999998763211111         124588999


Q ss_pred             Eeeccc
Q 036801          153 CLDVEF  158 (388)
Q Consensus       153 ~L~l~~  158 (388)
                      .||-..
T Consensus       178 ~LD~~~  183 (198)
T d1m9la_         178 KLDGMP  183 (198)
T ss_dssp             EESSGG
T ss_pred             EeCCcc
Confidence            998544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.5e-07  Score=71.00  Aligned_cols=88  Identities=28%  Similarity=0.221  Sum_probs=72.6

Q ss_pred             CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801            2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT   81 (388)
Q Consensus         2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~   81 (388)
                      +.++++|++|.+.+++.++.+.+.+|.   ++++|+.|++++| ++..++...        +..+++|++|++++ ++++
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~---~l~~L~~L~Ls~N-~l~~i~~~~--------f~~l~~L~~L~Ls~-N~l~   93 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIVKS-GLRFVAPDA--------FHFTPRLSRLNLSF-NALE   93 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSC---SCCCCSEEECCSS-CCCEECTTG--------GGSCSCCCEEECCS-SCCS
T ss_pred             ccCccccCeeecCCCccccccCchhhc---cccccCcceeecc-ccCCccccc--------ccccccccceeccC-CCCc
Confidence            356789999999988889988777888   8999999999998 688876542        56799999999997 5799


Q ss_pred             cccCCCcccccCCCccEEEeecCC
Q 036801           82 SFSTGDVHMLEFPSLKELWISRCP  105 (388)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~l~~c~  105 (388)
                      .++.+.  + ...+|+.|++++++
T Consensus        94 ~l~~~~--~-~~~~l~~L~L~~Np  114 (156)
T d2ifga3          94 SLSWKT--V-QGLSLQELVLSGNP  114 (156)
T ss_dssp             CCCSTT--T-CSCCCCEEECCSSC
T ss_pred             ccChhh--h-ccccccccccCCCc
Confidence            888774  3 34579999999885

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.6e-08  Score=94.13  Aligned_cols=109  Identities=15%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             CCCcCEEEEecCCCceeecchh---hhhccCccCEEeeccccccccccccCCCCCccccccce-ecccccceeecccccc
Q 036801          248 FQNLTTLEISHCNGLKNVLTFL---IAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEV-IAFSKLNELRLLNLES  323 (388)
Q Consensus       248 ~~~L~~L~l~~c~~l~~~~~~~---~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~  323 (388)
                      ...|+.+.+++|. +.......   +....++|++|+++++ .++......-       .+.. ...+.|++|++.+| .
T Consensus       311 ~~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l-------~~~l~~~~~~L~~L~Ls~n-~  380 (460)
T d1z7xw1         311 GCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVREL-------CQGLGQPGSVLRVLWLADC-D  380 (460)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHH-------HHHHTSTTCCCCEEECTTS-C
T ss_pred             ccccccccccccc-hhhhhhhhcccccccccchhhhheeee-cccCcccchh-------hhhhhcccCCCCEEECCCC-C
Confidence            3567888887663 33322211   2234567888888665 3432110000       0000 12356888999888 4


Q ss_pred             cce-----eccCcccccCCCcceEeccCCccccc-----CCCCCc-CCCCcceEEEe
Q 036801          324 LRS-----FYSGYCALNFPSLERLLVDDCTNMEI-----FSRGEL-STPMLHKVQLN  369 (388)
Q Consensus       324 l~~-----l~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~-~~~~L~~l~l~  369 (388)
                      +.+     +....  ..+++|++|+++++ .++.     +...+. ....|+.+.+.
T Consensus       381 i~~~~~~~l~~~l--~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~  434 (460)
T d1z7xw1         381 VSDSSCSSLAATL--LANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLY  434 (460)
T ss_dssp             CCHHHHHHHHHHH--HHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             CChHHHHHHHHHH--hcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECC
Confidence            543     32222  45688999999875 3321     211111 22468888887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.04  E-value=1.6e-07  Score=84.32  Aligned_cols=170  Identities=14%  Similarity=0.126  Sum_probs=78.1

Q ss_pred             cCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccc--------ccc----chhhccCccEeecccc
Q 036801           92 EFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNK--------FLF----SKDLLCKLKCLDVEFV  159 (388)
Q Consensus        92 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~--------~~l----p~~~l~~L~~L~l~~~  159 (388)
                      .+++|++|++++| .+.......+ .......++|++|++++|.+....        ...    .....+.|+.+.++.+
T Consensus        91 ~~~~L~~L~L~~n-~i~~~~~~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          91 KCPKLHTVRLSDN-AFGPTAQEPL-IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             TCTTCCEEECCSC-CCCTTTHHHH-HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             hCCCccccccccc-ccccccccch-hhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            3566777777666 2221100000 000134566777777666542100        000    0012456777776654


Q ss_pred             ccccccc--cchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcc
Q 036801          160 DELTTIL--SLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHH  237 (388)
Q Consensus       160 ~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~  237 (388)
                      ..-. ..  .....+...+.|+.|++..+.+   ...   +...-+.              +.+...++|+.|++++|..
T Consensus       169 ~i~~-~~~~~l~~~l~~~~~L~~L~L~~n~i---~~~---g~~~~l~--------------~~l~~~~~L~~L~Ls~N~i  227 (344)
T d2ca6a1         169 RLEN-GSMKEWAKTFQSHRLLHTVKMVQNGI---RPE---GIEHLLL--------------EGLAYCQELKVLDLQDNTF  227 (344)
T ss_dssp             CCTG-GGHHHHHHHHHHCTTCCEEECCSSCC---CHH---HHHHHHH--------------TTGGGCTTCCEEECCSSCC
T ss_pred             cccc-cccccccchhhhhhhhcccccccccc---ccc---ccccchh--------------hhhcchhhhcccccccccc
Confidence            3211 10  1122345567777777743444   110   0000000              3445567777777776642


Q ss_pred             c----cccCCCCCCCCCcCEEEEecCCCceeecchhhhh-----ccCccCEEeeccc
Q 036801          238 L----INLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAK-----TLVRLREMKIESC  285 (388)
Q Consensus       238 l----~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-----~~~~L~~L~l~~c  285 (388)
                      -    ..+...+..+++|++|++++|. +.+.....++.     ..+.|++|+++++
T Consensus       228 ~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N  283 (344)
T d2ca6a1         228 THLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN  283 (344)
T ss_dssp             HHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred             cccccccccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCC
Confidence            1    1223344566777777777653 44332222211     1245777777554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.81  E-value=2.4e-06  Score=76.42  Aligned_cols=196  Identities=13%  Similarity=0.077  Sum_probs=101.1

Q ss_pred             ccCCccEEEEeecCcccc-ccccch--hhccCccEeeccccccccc----------cccchhHhhcCCCccEEEEEeccC
Q 036801          122 VFPNLEELIVDAKYITTN-KFLFSK--DLLCKLKCLDVEFVDELTT----------ILSLDDFLQRFHTLKVLQIEGYNY  188 (388)
Q Consensus       122 ~l~~L~~L~i~~~~~~~~-~~~lp~--~~l~~L~~L~l~~~~~~~~----------~~~~~~~~~~l~~L~~L~l~~~~l  188 (388)
                      ..++|+.|++++|.+... +..+..  ...++|++|+++++..-..          ...........+.|+.+.+..+.+
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            567888888888765321 111221  2367888888887642110          000001124567788888754554


Q ss_pred             CCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcccc-----ccCCCCCCCCCcCEEEEecCCCce
Q 036801          189 WLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLI-----NLVPSSTSFQNLTTLEISHCNGLK  263 (388)
Q Consensus       189 ~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~  263 (388)
                         +......+.                  ..+...++|++|++.+|..-.     .+...+..+++|+.|+++++ .+.
T Consensus       171 ---~~~~~~~l~------------------~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~  228 (344)
T d2ca6a1         171 ---ENGSMKEWA------------------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFT  228 (344)
T ss_dssp             ---TGGGHHHHH------------------HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCH
T ss_pred             ---ccccccccc------------------chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccc-ccc
Confidence               211000000                  233455788888888874321     12234567788888888865 343


Q ss_pred             eecch---hhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccce-----eccCccccc
Q 036801          264 NVLTF---LIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRS-----FYSGYCALN  335 (388)
Q Consensus       264 ~~~~~---~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~  335 (388)
                      +....   ......++|++|++++|. ++......-...   ..  ....++|++|+++++. +..     +.... ...
T Consensus       229 ~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~---l~--~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l-~~~  300 (344)
T d2ca6a1         229 HLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDA---FS--KLENIGLQTLRLQYNE-IELDAVRTLKTVI-DEK  300 (344)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHH---HH--TCSSCCCCEEECCSSC-CBHHHHHHHHHHH-HHH
T ss_pred             ccccccccccccccccchhhhhhcCc-cCchhhHHHHHH---hh--hccCCCCCEEECCCCc-CChHHHHHHHHHH-Hcc
Confidence            32111   123466788888887774 332110000000   00  0123678888888863 432     22211 124


Q ss_pred             CCCcceEeccCC
Q 036801          336 FPSLERLLVDDC  347 (388)
Q Consensus       336 ~~~L~~L~l~~c  347 (388)
                      +++|++|+++++
T Consensus       301 ~~~L~~L~l~~N  312 (344)
T d2ca6a1         301 MPDLLFLELNGN  312 (344)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEECCCC
Confidence            678888888764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.00055  Score=53.47  Aligned_cols=84  Identities=21%  Similarity=0.159  Sum_probs=49.8

Q ss_pred             cccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccc--
Q 036801           65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL--  142 (388)
Q Consensus        65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~--  142 (388)
                      .+++|++|++++ ++++++.........+++|+.|+++++ .++.++....     -...+|+.|++.+|.+......  
T Consensus        63 ~~~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~-----l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          63 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDK-----IKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HCTTCCCCCCCS-SCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHH-----HTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             hCCCCCEeeCCC-ccccCCchhHHHHhhCCcccccccccC-ccccchhhhh-----hhccccceeecCCCCcCcCcccch
Confidence            578888888886 356665321101445788888888877 5554443221     2345678888888766321111  


Q ss_pred             ----cchhhccCccEee
Q 036801          143 ----FSKDLLCKLKCLD  155 (388)
Q Consensus       143 ----lp~~~l~~L~~L~  155 (388)
                          .....+|+|+.||
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                1123478888886

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0024  Score=57.90  Aligned_cols=115  Identities=12%  Similarity=-0.012  Sum_probs=64.9

Q ss_pred             CCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccc-cccccc--hhhccCccEeeccccccccccccchh
Q 036801           94 PSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITT-NKFLFS--KDLLCKLKCLDVEFVDELTTILSLDD  170 (388)
Q Consensus        94 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~-~~~~lp--~~~l~~L~~L~l~~~~~~~~~~~~~~  170 (388)
                      ++|++|++++. +++......    +...+++++.|++.+|.+.. +...+.  ...+++|++|+++++. ++ +.....
T Consensus         2 ~~l~~ld~~~~-~i~~~~~~~----l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~-~~~~~~   74 (460)
T d1z7xw1           2 LDIQSLDIQCE-ELSDARWAE----LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LG-DVGVHC   74 (460)
T ss_dssp             EEEEEEEEESC-CCCHHHHHH----HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CH-HHHHHH
T ss_pred             CCCCEEEeeCC-cCChHHHHH----HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CC-hHHHHH
Confidence            46889999655 665321111    11578889999999987632 111222  2347789999998764 22 111111


Q ss_pred             Hhh----cCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCc
Q 036801          171 FLQ----RFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCH  236 (388)
Q Consensus       171 ~~~----~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~  236 (388)
                      ...    ...+|++|++..+.+   ++..-..+.                  +.+..+++|++|++.+|.
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~i---t~~~~~~l~------------------~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCCL---TGAGCGVLS------------------STLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCC---BGGGHHHHH------------------HHTTSCTTCCEEECCSSB
T ss_pred             HHHHHhcCCCCCCEEECCCCCc---ccccccccc------------------chhhcccccccccccccc
Confidence            111    234788898844455   221000000                  455677899999998874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0015  Score=50.90  Aligned_cols=89  Identities=21%  Similarity=0.192  Sum_probs=51.8

Q ss_pred             cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801           32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF  111 (388)
Q Consensus        32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  111 (388)
                      .+++|++|+|++| +++.+.....      .+..+++|+.|++++ +.++++....  .....+|+.|++.+++......
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~------~~~~l~~L~~L~Ls~-N~i~~l~~l~--~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSS------IVQKAPNLKILNLSG-NELKSERELD--KIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGT------HHHHSTTCCCCCCTT-SCCCCGGGHH--HHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hCCCCCEeeCCCc-cccCCchhHH------HHhhCCccccccccc-Cccccchhhh--hhhccccceeecCCCCcCcCcc
Confidence            5788888888888 4655433210      144678888888886 4677665432  3345678888888875432111


Q ss_pred             cc-ccCCccccccCCccEEE
Q 036801          112 KR-TTNDLTKKVFPNLEELI  130 (388)
Q Consensus       112 ~~-~~~~~~~~~l~~L~~L~  130 (388)
                      .. .+...+...+|+|+.|+
T Consensus       133 ~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         133 DQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SHHHHHHHHHTTSTTCCEET
T ss_pred             cchhHHHHHHHHCCCCCEEC
Confidence            10 00001125678888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.01  E-value=0.024  Score=43.83  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=15.4

Q ss_pred             CCccceEEecCCcccc----ccCCCCCCCCCcCEEEEec
Q 036801          224 MDNLVILRVSSCHHLI----NLVPSSTSFQNLTTLEISH  258 (388)
Q Consensus       224 l~~L~~L~l~~c~~l~----~l~~~~~~~~~L~~L~l~~  258 (388)
                      .++|++|++++|..-.    .+...+...++|+.|++++
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCC
Confidence            3455555555552211    1112234445566666653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.28  E-value=0.022  Score=44.02  Aligned_cols=13  Identities=15%  Similarity=0.184  Sum_probs=6.9

Q ss_pred             cCCccEEEEeecC
Q 036801          123 FPNLEELIVDAKY  135 (388)
Q Consensus       123 l~~L~~L~i~~~~  135 (388)
                      .++|++|++.++.
T Consensus        99 n~sL~~L~l~~n~  111 (167)
T d1pgva_          99 TQSIVEFKADNQR  111 (167)
T ss_dssp             TCCCSEEECCCCS
T ss_pred             CCcCCEEECCCCc
Confidence            3455666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.24  E-value=0.032  Score=42.92  Aligned_cols=34  Identities=29%  Similarity=0.252  Sum_probs=15.0

Q ss_pred             CCccceEEecCCccc----cccCCCCCCCCCcCEEEEe
Q 036801          224 MDNLVILRVSSCHHL----INLVPSSTSFQNLTTLEIS  257 (388)
Q Consensus       224 l~~L~~L~l~~c~~l----~~l~~~~~~~~~L~~L~l~  257 (388)
                      .++++.+++.+|..-    ..+...+...++|+.++|.
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECC
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeec
Confidence            345555555544321    1122233444555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.19  E-value=0.0099  Score=46.05  Aligned_cols=41  Identities=12%  Similarity=0.080  Sum_probs=19.1

Q ss_pred             CCCcccEEeEecCCCCcccccccccc-cccccccceeecccc
Q 036801            4 GIQNLTHLTFYNCMNLRCLFSSSTVS-NSSFVRLQYIEIEKC   44 (388)
Q Consensus         4 ~l~~L~~L~l~~~~~~~~~~p~~~~~-~~~l~~L~~L~L~~~   44 (388)
                      +.++|++|.+++++.++...-..+++ ....++|++|++++|
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n   56 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT   56 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC
Confidence            44566666666544443211111111 014555666666665