Citrus Sinensis ID: 036854

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MNRFRGFKLGRRIVKVFKWIIRPRRRPRCRYFLGGAVSQSTRSSCKAMSKFLSMASCIRRGAKKLCFPSSNPGFIQLGQEKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHCRSRKHHRPHL
Secondary Structure (PSIPRED)
ccccccEEEcHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEccccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEccccEEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEcccccccEEEEEEEEEcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MNRFRGFKLGRRIVKVFKWiirprrrprcryflggavsqsTRSSCKAMSKFLSMASCIRRgakklcfpssnpgfiqlgqekpaevpkghLAVYVgesddearRVFVPVIYFNHPLFGELLKQAERVygfnhpggitipcrisefeKVKTRIDawdhcrsrkhhrphl
Flexible Loop (DISEMBL)
mnrfrgfklgrrivkvfkwiirprrrprcryflggavsqstrssCKAMSKFLSMASCIRRGAKKLCFPSSNPGFIQLGQEKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAwdhcrsrkhhrphl
Low Complexity Region (SEG)
MNRFRGFKLGRRIVKVFKWIIrprrrprcrYFLGGAVSQSTRSSCKAMSKFLSMASCIRRGAKKLCFPSSNPGFIQLGQEKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHCRSRKHHRPHL
Disordered region (IsUnstruct)
****RGFKLGRRIVKVFKWIIRPRRRPRCRYFLGGAV**************************************************GHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHC**********
Disordered Region (DISOPRED)
****RGFKLGRRIVKVFKWIIRPRRR**********************************************************VPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPCRISEFEKVK*******************
Disordered Region (DISEMBL)
MNRFRGFKLGRRIVKVFKWIIRPRRRPRCRYFLGGA***********MSKFLSMASCIRRGAKKLCFPSSNPGFIQLGQEKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHC**********
Disordered Region (DISPRO)
***FRGFKLGRRIVKVFKWIIRPRRRPRCRYFLGGAV**STRSSCKAMSKFLSMASCIRRGAKKLCFPSS***********PAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDA**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNRFRGFKLGRRIVKVFKWIIRPRRRPRCRYFLGGAVSQSTRSSCKAMSKFLSMASCIRRGAKKLCFPSSNPGFIQLGQEKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHCRSRKHHRPHL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
P33080	92	Auxin-induced protein X10	no	no	0.413	0.75	0.506	3e-14
P33079	93	Auxin-induced protein 10A	no	no	0.413	0.741	0.506	4e-13
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.419	0.760	0.459	3e-12
P33081	82	Auxin-induced protein 15A	no	no	0.413	0.841	0.465	4e-12
P33083	90	Auxin-induced protein 6B	no	no	0.413	0.766	0.465	2e-11
P33082	82	Auxin-induced protein X15	no	no	0.371	0.756	0.484	3e-11

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 4/73 (5%)

Query: 81  KPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHP-GGITIPC 139
           K  EVPKG+L VYVG   D+ RR  +PV Y N P F +LL QAE  +G++HP GG+TIPC
Sbjct: 21  KSVEVPKGYLVVYVG---DKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPC 77

Query: 140 RISEFEKVKTRID 152
           +  EF  V + ++
Sbjct: 78  KEDEFLTVTSHLN 90

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 4/73 (5%)

Query: 81  KPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHP-GGITIPC 139
           K  +VPKG+ AVYVG   D+ RR  +PV Y N P F ELL QAE  +G++HP GG+TIPC
Sbjct: 22  KRVDVPKGYAAVYVG---DKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPC 78

Query: 140 RISEFEKVKTRID 152
           +  EF  V   ++
Sbjct: 79  KEEEFLNVTAHLN 91

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 4/74 (5%)

Query: 81  KPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHP-GGITIPC 139
           K  + PKG+LAVYVGE+    +R  +PV + N PLF +LL QAE  +G++HP GG+TIPC
Sbjct: 21  KVLDAPKGYLAVYVGEN---MKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPC 77

Query: 140 RISEFEKVKTRIDA 153
               F+ + + + A
Sbjct: 78  SEDLFQHITSCLSA 91

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 4/73 (5%)

Query: 81  KPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHP-GGITIPC 139
           K A+ PKG+LAVYVGE   + +R  +PV Y N P F +LL QAE  +G++HP GG+TIPC
Sbjct: 13  KAADAPKGYLAVYVGE---KLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPC 69

Query: 140 RISEFEKVKTRID 152
               F+ + + ++
Sbjct: 70  SEDVFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 4/73 (5%)

Query: 81  KPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHP-GGITIPC 139
           K  +V KG+LAVYVGE   + RR  +PV Y N P F +LL QAE  +G++HP GG+TIPC
Sbjct: 21  KAVDVEKGYLAVYVGE---KMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPC 77

Query: 140 RISEFEKVKTRID 152
               F+ + + ++
Sbjct: 78  SEDVFQHITSFLN 90

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 4/66 (6%)

Query: 83  AEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHP-GGITIPCRI 141
            + PKG+LAVYVGE   + +R  +PV Y N P F +LL QAE  +G++HP GG+TIPC  
Sbjct: 15  VDAPKGYLAVYVGE---KMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSE 71

Query: 142 SEFEKV 147
             F+++
Sbjct: 72  EVFQRI 77

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
224071573	169	SAUR family protein [Populus trichocarpa	0.952	0.940	0.575	6e-48
224125140	166	SAUR family protein [Populus trichocarpa	0.922	0.927	0.581	4e-45
225426934	163	PREDICTED: uncharacterized protein LOC10	0.904	0.926	0.561	3e-41
15235723	160	SAUR-like auxin-responsive protein [Arab	0.880	0.918	0.550	4e-41
116831383	161	unknown [Arabidopsis thaliana]	0.880	0.913	0.550	4e-41
297803866	148	auxin-responsive family protein [Arabido	0.874	0.986	0.575	1e-40
297813771	160	auxin-responsive family protein [Arabido	0.910	0.95	0.529	8e-40
15234550	157	SAUR-like auxin-responsive protein [Arab	0.892	0.949	0.541	1e-39
224127334	170	SAUR family protein [Populus trichocarpa	0.916	0.9	0.528	1e-37
225453979	172	PREDICTED: uncharacterized protein LOC10	0.946	0.918	0.491	1e-36

>gi|224071573|ref|XP_002303522.1| SAUR family protein [Populus trichocarpa] gi|222840954|gb|EEE78501.1| SAUR family protein [Populus trichocarpa]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 99/172 (57%), Positives = 121/172 (70%), Gaps = 13/172 (7%)

Query: 1   MNRFRGFKLGRR-IVKVFKWIIRPRRRPRCRYFLGGAVSQSTRSSCKAMSKFLSMASCIR 59
           M R RGF++GR+ + + FKWI RPRR+P  R     +     R S  ++SK L MA  ++
Sbjct: 1   MKRLRGFRIGRKKLARFFKWIARPRRKP-ARL----SSMDLPRRSFNSISKILGMARRLQ 55

Query: 60  RGAKKLCFPSSNPGFIQLGQEKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGEL 119
           RGAK LCFP S+PG+I+LG  KP EVPKGH+AVYVG+ D + +R  VPVIYFNHPLFGEL
Sbjct: 56  RGAKTLCFPHSDPGYIRLGHAKPMEVPKGHMAVYVGQPDGDTKRELVPVIYFNHPLFGEL 115

Query: 120 LKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHCR-------SRKHHR 164
           LK  ERVYG+NH GGITIPC  SEFEKVK RI AW+HC         R+HH+
Sbjct: 116 LKGTERVYGYNHSGGITIPCGYSEFEKVKVRIAAWNHCHKSRGYSLQRRHHK 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125140|ref|XP_002329903.1| SAUR family protein [Populus trichocarpa] gi|222871140|gb|EEF08271.1| SAUR family protein [Populus trichocarpa]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/160 (58%), Positives = 113/160 (70%), Gaps = 6/160 (3%)

Query: 1   MNRFRGFKLGRR-IVKVFKWIIRPRRRPRCRYFLGGAVSQSTRSSCKAMSKFLSMASCIR 59
           + R RGF+LGR+ + + FKWI + RR P              R  C ++SK L MA    
Sbjct: 2   IKRIRGFRLGRKKLARFFKWIAQRRREP-----ARLCSRDHPRRPCNSISKILDMARYFT 56

Query: 60  RGAKKLCFPSSNPGFIQLGQEKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGEL 119
           RGAK LCFP+S+PG+I+LG  KP EVPKGHLAVYVGESD + RR  VPVI+FNHPLF EL
Sbjct: 57  RGAKTLCFPNSDPGYIKLGHAKPMEVPKGHLAVYVGESDGDTRRELVPVIFFNHPLFAEL 116

Query: 120 LKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHCRS 159
           L++ ERV G+NH GGITIPC  SEFEKVKTRI AW++C +
Sbjct: 117 LQRTERVNGYNHSGGITIPCGYSEFEKVKTRIAAWENCHN 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426934|ref|XP_002265485.1| PREDICTED: uncharacterized protein LOC100255700 [Vitis vinifera] gi|297741147|emb|CBI31878.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 115/162 (70%), Gaps = 11/162 (6%)

Query: 1   MNRFRGFKLGRRIVKVFKWIIRPRRRPRCRYFLGGAVSQSTRSSCKAMSKFLSMASCIRR 60
           M + +GF+LGR++V VF+W+ R  + PR    +     +S RS  +AM+K  +    +  
Sbjct: 1   MRKTKGFRLGRKLVTVFRWVFRRNQSPRV---IKSLDHRSCRS--RAMTKICNWGRRLLM 55

Query: 61  GAKKLCFPSSNPGFIQLGQE----KPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLF 116
            AK LCFP S  G++++G E    KP EVPKGHLAVYVG+S D   RV VPV+YFNHPLF
Sbjct: 56  KAKGLCFPKS--GYVRVGHEPCETKPMEVPKGHLAVYVGDSGDHTHRVLVPVLYFNHPLF 113

Query: 117 GELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHCR 158
           GELL+ AE+VYGFNHPGGITIPC I+EFEKVKTRIDA +H R
Sbjct: 114 GELLRNAEKVYGFNHPGGITIPCPITEFEKVKTRIDAGEHFR 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235723|ref|NP_193993.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana] gi|2827539|emb|CAA16547.1| predicted protein [Arabidopsis thaliana] gi|3892717|emb|CAA22167.1| putative protein [Arabidopsis thaliana] gi|7269108|emb|CAB79217.1| putative protein [Arabidopsis thaliana] gi|91806716|gb|ABE66085.1| auxin-responsive family protein [Arabidopsis thaliana] gi|332659231|gb|AEE84631.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/167 (55%), Positives = 112/167 (67%), Gaps = 20/167 (11%)

Query: 1   MNRFRGFKLGRRIVKVFKWIIRPRRRPRCRYFLGGAVSQSTRSSC-----KAMSKFLSMA 55
           M R RGFK+G R VK+FKWIIR RR            +Q+ +  C       ++K  S+A
Sbjct: 1   MKRLRGFKIGHRFVKIFKWIIRSRR------------NQTGKRQCLTGILNPVTKIYSLA 48

Query: 56  S-CIRRGAKKLCFPSSNPGFIQLGQE-KPAEVPKGHLAVYVGESDDEARRVFVPVIYFNH 113
             C+RRGA +LC     PG  +LG E K   VP+GHL V+VGES ++ RRV VPVIYFNH
Sbjct: 49  RRCLRRGANRLC-GGMKPGQTRLGNEPKTPTVPRGHLVVHVGESGEDTRRVVVPVIYFNH 107

Query: 114 PLFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHCRSR 160
           PLFGELL+QAERVYGF  PG I IPCR+S+FEKV+ RI AWDHCR +
Sbjct: 108 PLFGELLEQAERVYGFEQPGRIMIPCRVSDFEKVQMRIAAWDHCRRK 154

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831383|gb|ABK28644.1| unknown [Arabidopsis thaliana]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/167 (55%), Positives = 112/167 (67%), Gaps = 20/167 (11%)

Query: 1   MNRFRGFKLGRRIVKVFKWIIRPRRRPRCRYFLGGAVSQSTRSSC-----KAMSKFLSMA 55
           M R RGFK+G R VK+FKWIIR RR            +Q+ +  C       ++K  S+A
Sbjct: 1   MKRLRGFKIGHRFVKIFKWIIRSRR------------NQTGKRQCLTGILNPVTKIYSLA 48

Query: 56  S-CIRRGAKKLCFPSSNPGFIQLGQE-KPAEVPKGHLAVYVGESDDEARRVFVPVIYFNH 113
             C+RRGA +LC     PG  +LG E K   VP+GHL V+VGES ++ RRV VPVIYFNH
Sbjct: 49  RRCLRRGANRLC-GGMKPGQTRLGNEPKTPTVPRGHLVVHVGESGEDTRRVVVPVIYFNH 107

Query: 114 PLFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHCRSR 160
           PLFGELL+QAERVYGF  PG I IPCR+S+FEKV+ RI AWDHCR +
Sbjct: 108 PLFGELLEQAERVYGFEQPGRIMIPCRVSDFEKVQMRIAAWDHCRRK 154

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803866|ref|XP_002869817.1| auxin-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297315653|gb|EFH46076.1| auxin-responsive family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/158 (57%), Positives = 107/158 (67%), Gaps = 12/158 (7%)

Query: 1   MNRFRGFKLGRRIVKVFKWIIRPRRRPRCRYFLGGAVSQSTRSSCKAMSKFLSMAS-CIR 59
           M + RGFK+G R VK+FKWIIR RR       +     Q        ++K  S+A  CIR
Sbjct: 1   MKKLRGFKIGHRFVKIFKWIIRSRR-------IQTGKRQCLTGILNPVTKIYSLARRCIR 53

Query: 60  RGAKKLCFPSSNPGFIQLGQE-KPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGE 118
           RGA +LC        +QLG E K   VPKGHL V+VGES D+ RRV VPVIYFNHPLFGE
Sbjct: 54  RGANRLCGGKKQ---VQLGNEPKTPSVPKGHLVVHVGESGDDTRRVVVPVIYFNHPLFGE 110

Query: 119 LLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDH 156
           LL+QAERVYGF+ PG ITIPCR+S+FEKV+ RI AWDH
Sbjct: 111 LLEQAERVYGFDQPGRITIPCRVSDFEKVQMRIAAWDH 148

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813771|ref|XP_002874769.1| auxin-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297320606|gb|EFH51028.1| auxin-responsive family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 112/170 (65%), Gaps = 18/170 (10%)

Query: 1   MNRFRGFKLGRRIVKVFKWIIRPRRRPRCRYFLGGAVSQSTRSSCKAMSKFLSMASCIRR 60
           M R RGFK+G R VK+FKW+I PR+R            Q        +S   S+A C+ R
Sbjct: 1   MKRVRGFKIGHRFVKIFKWMILPRKR------------QCPTRITNPVSGIRSLARCLSR 48

Query: 61  GAKKLCFPSS-NPGF--IQLGQEKPAE---VPKGHLAVYVGESDDEARRVFVPVIYFNHP 114
           GAK+LC     NPG   I+LG++        P+GHL V+VGESD + RRV VPVIYFNHP
Sbjct: 49  GAKRLCGGGKKNPGQNQIRLGKDPKTSNRVAPRGHLVVHVGESDGDTRRVVVPVIYFNHP 108

Query: 115 LFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHCRSRKHHR 164
           LF ELL+QAERV+GFN PG ITIPCR+S+FEKV+ RI AWDHCR +  ++
Sbjct: 109 LFEELLEQAERVHGFNQPGRITIPCRVSDFEKVQMRIAAWDHCRRKSSYK 158

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234550|ref|NP_192978.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana] gi|5281052|emb|CAB45988.1| putative protein [Arabidopsis thaliana] gi|7267943|emb|CAB78284.1| putative protein [Arabidopsis thaliana] gi|332657727|gb|AEE83127.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 114/170 (67%), Gaps = 21/170 (12%)

Query: 1   MNRFRGFKLGRRIVKVFKWIIRPRRRPRCRYFLGGAVSQSTRSSCKAMSKFLSMASCIRR 60
           M R RGFK+G R VK+FKWI  PR R   R                 ++   S+A C+ R
Sbjct: 1   MKRVRGFKIGHRFVKIFKWI--PRNRCPTRI-------------TNPVTGIRSLARCLSR 45

Query: 61  GAKKLCFPSS-NPGF--IQLGQEKPAE---VPKGHLAVYVGESDDEARRVFVPVIYFNHP 114
           GAK+LC  S  NPG   I+LG++       VP+GHL V+VGESDD+ RRV VPVIYFNHP
Sbjct: 46  GAKRLCGGSKKNPGQNQIRLGKDPKKSNRVVPRGHLVVHVGESDDDTRRVVVPVIYFNHP 105

Query: 115 LFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHCRSRKHHR 164
           LFGELL+QAERV+GF+ PG ITIPCR+S+FEKV+ RI AWDHCR +  ++
Sbjct: 106 LFGELLEQAERVHGFDQPGRITIPCRVSDFEKVQLRIAAWDHCRRKNSYK 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127334|ref|XP_002320048.1| SAUR family protein [Populus trichocarpa] gi|222860821|gb|EEE98363.1| SAUR family protein [Populus trichocarpa]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 103/157 (65%), Gaps = 4/157 (2%)

Query: 1   MNRFRGFKLGRRIVKVFKWIIRPRRRPRCRYFLGGAVSQSTRSSCKAMSKFLSMASCIRR 60
           M + RGFK+G+R+V++  WI R  R     Y L G    + RS  K++SK ++    + +
Sbjct: 1   MRKIRGFKIGKRLVRISTWIFRRTRIHPPGYNLLGQSESTCRSKPKSISKIINWGRRLTK 60

Query: 61  GAKKLCFPSSNPGFIQLGQE----KPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLF 116
           GAK LC      G+I +G E    KP  VPKGHLAVYVG+ D +  RV VPVIYFNHPLF
Sbjct: 61  GAKSLCGAKPGSGYIPMGHELVCDKPVTVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLF 120

Query: 117 GELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDA 153
           GELL++AE  YGFN  GGITIPCR SEFE V+TRI A
Sbjct: 121 GELLREAEEEYGFNQQGGITIPCRFSEFESVQTRIKA 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453979|ref|XP_002280387.1| PREDICTED: uncharacterized protein LOC100260776 [Vitis vinifera]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 112/171 (65%), Gaps = 13/171 (7%)

Query: 1   MNRFRGFKLGRRIVKVFKWIIRPRRRPRCRYFLGGAVSQSTRSSCKAMSKFLSMASCIRR 60
           M + RGFKLG+R+VK   W  R  R P   + LG +  ++     K +S+  +    ++ 
Sbjct: 1   MRKIRGFKLGKRVVKFCGWFFRRSRNPSGYHRLGQSTGKT-----KTISRLCNWGQRLKT 55

Query: 61  GAKKLCFPSSNP----GFIQLGQEKPA-EVPKGHLAVYVGESDDEARRVFVPVIYFNHPL 115
            AK++C  +  P    G++ +G+E PA  VPKGHLAVYVG+ D + +RV VPVIYFNHPL
Sbjct: 56  KAKRICSLNPGPACFSGYLPVGEEMPAATVPKGHLAVYVGQKDGDFQRVLVPVIYFNHPL 115

Query: 116 FGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHCRS---RKHH 163
           FGELL+++E  YGF HPGGITIPCRISEFE V+TRI A   CR    R+H+
Sbjct: 116 FGELLRESEEEYGFQHPGGITIPCRISEFESVQTRIAACQGCRKMTWRRHY 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2127555	160	AT4G22620 "AT4G22620" [Arabido	0.910	0.95	0.543	2e-40
TAIR|locus:2139124	157	AT4G12410 "AT4G12410" [Arabido	0.892	0.949	0.535	2.9e-39
TAIR|locus:2101771	170	AT3G60690 [Arabidopsis thalian	0.892	0.876	0.431	7.1e-29
TAIR|locus:2050832	162	SAUR36 "AT2G45210" [Arabidopsi	0.862	0.888	0.427	2.2e-27
TAIR|locus:2062759	121	AT2G46690 "AT2G46690" [Arabido	0.514	0.710	0.494	1.2e-17
TAIR|locus:2168611	142	AT5G53590 "AT5G53590" [Arabido	0.479	0.563	0.488	2.9e-16
TAIR|locus:2134598	122	AT4G00880 "AT4G00880" [Arabido	0.407	0.557	0.565	3.7e-16
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.395	0.702	0.552	4.7e-16
TAIR|locus:2079552	136	AT3G61900 "AT3G61900" [Arabido	0.413	0.507	0.521	2.6e-15
TAIR|locus:2079389	96	SAUR29 "AT3G03820" [Arabidopsi	0.443	0.770	0.533	6.9e-15

TAIR|locus:2127555 AT4G22620 "AT4G22620" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 88/162 (54%), Positives = 105/162 (64%)

Query:     1 MNRFRGFKLGRRIVKVFKWIIXXXXXXXXXYFLGGAVSQSTRSSCKAMSKFLSMAS-CIR 59
             M R RGFK+G R VK+FKWII                 Q        ++K  S+A  C+R
Sbjct:     1 MKRLRGFKIGHRFVKIFKWIIRSRRNQTGK-------RQCLTGILNPVTKIYSLARRCLR 53

Query:    60 RGAKKLCFPSSNPGFIQLGQE-KPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGE 118
             RGA +LC     PG  +LG E K   VP+GHL V+VGES ++ RRV VPVIYFNHPLFGE
Sbjct:    54 RGANRLC-GGMKPGQTRLGNEPKTPTVPRGHLVVHVGESGEDTRRVVVPVIYFNHPLFGE 112

Query:   119 LLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHCRSR 160
             LL+QAERVYGF  PG I IPCR+S+FEKV+ RI AWDHCR +
Sbjct:   113 LLEQAERVYGFEQPGRIMIPCRVSDFEKVQMRIAAWDHCRRK 154

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139124 AT4G12410 "AT4G12410" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 91/170 (53%), Positives = 115/170 (67%)

Query:     1 MNRFRGFKLGRRIVKVFKWIIXXXXXXXXXYFLGGAVSQSTRSSCKAMSKFLSMASCIRR 60
             M R RGFK+G R VK+FKWI                    TR +   ++   S+A C+ R
Sbjct:     1 MKRVRGFKIGHRFVKIFKWIPRNRC--------------PTRIT-NPVTGIRSLARCLSR 45

Query:    61 GAKKLCFPSS-NPGF--IQLGQE-KPAE--VPKGHLAVYVGESDDEARRVFVPVIYFNHP 114
             GAK+LC  S  NPG   I+LG++ K +   VP+GHL V+VGESDD+ RRV VPVIYFNHP
Sbjct:    46 GAKRLCGGSKKNPGQNQIRLGKDPKKSNRVVPRGHLVVHVGESDDDTRRVVVPVIYFNHP 105

Query:   115 LFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWDHCRSRKHHR 164
             LFGELL+QAERV+GF+ PG ITIPCR+S+FEKV+ RI AWDHCR +  ++
Sbjct:   106 LFGELLEQAERVHGFDQPGRITIPCRVSDFEKVQLRIAAWDHCRRKNSYK 155

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2101771 AT3G60690 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 69/160 (43%), Positives = 100/160 (62%)

Query:     1 MNRFRGFKLGRRIVKVFKWIIXXXXXXXXXYFLGGAVSQSTRSSCK--AMSKFLSMA-SC 57
             M + RG K+ R I ++ +WI+         Y     +S + R  CK  A++K +S   S 
Sbjct:     1 MRKLRGIKIRRPIKQISRWILRRIKIRRSRYT---RLSPN-RPVCKPRAITKLISWGRSL 56

Query:    58 IRRGAKKLCFPSSNPGFIQLGQE----KPAEVPKGHLAVYVGESDDEARRVFVPVIYFNH 113
                 A+ +    SN G+I +GQE    KP  VPKGH AVY+G+ D + +RV VP++YFNH
Sbjct:    57 TSHSARFIGSKCSNSGYIPIGQEPIREKPDPVPKGHSAVYIGKKDGDFQRVLVPIVYFNH 116

Query:   114 PLFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDA 153
             PLFGELL++AE  +GF+  GGITIPC  S+F++V+TRI++
Sbjct:   117 PLFGELLREAEEEFGFSQEGGITIPCPYSDFKRVQTRIES 156

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2050832 SAUR36 "AT2G45210" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 65/152 (42%), Positives = 90/152 (59%)

Query:     1 MNRFRGFKLGRRIVKVFKWIIXXXXXXXXXYFLGGAVSQSTRSSCKAMSKFLSMASCIRR 60
             M +  GF++GRR   V +WI          Y     +  ST+ +C  M     + S  +R
Sbjct:     1 MRKIIGFRIGRR---VSRWIFRKTRIQRSGY---NRI-HSTQQACMLMRPLAKLKSWGQR 53

Query:    61 GAKKLCFPSSN-PGFIQLGQEKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGEL 119
               +     S+    +I +  +K   VP+GHLA+YVG+ D +  RV VP++YFNHPLFGEL
Sbjct:    54 LKQSFRRRSTRRSAYIPVDHKKADPVPRGHLAIYVGQKDGDCHRVLVPIVYFNHPLFGEL 113

Query:   120 LKQAERVYGFNHPGGITIPCRISEFEKVKTRI 151
             L++AE+ YGF H GGITIPC  S+FE+VKTRI
Sbjct:   114 LREAEKEYGFCHEGGITIPCLYSDFERVKTRI 145

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:1900057 "positive regulation of leaf senescence" evidence=IMP

TAIR|locus:2062759 AT2G46690 "AT2G46690" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 43/87 (49%), Positives = 53/87 (60%)

Query:    81 KPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPCR 140
             K  +VPKG LA+ VG   +E +R  VPV+YFNHPLF +LLK+AE  YGF+  G ITIPC 
Sbjct:    20 KVKDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCH 79

Query:   141 ISEFEKVKTRIDAWDHC-RSRKHHRPH 166
             + EF  V+  ID          HH  H
Sbjct:    80 VEEFRYVQALIDGERSVYNGNNHHHRH 106

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0006816 "calcium ion transport" evidence=RCA

TAIR|locus:2168611 AT5G53590 "AT5G53590" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 42/86 (48%), Positives = 56/86 (65%)

Query:    84 EVPKGHLAVYVGESDDEA--RRVFVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPCRI 141
             +VPKG +A+ VG  DDE    R  VP+++ +HPLF +LLK+AE+ YGF H G ITIPC +
Sbjct:    45 DVPKGCVAIMVGHEDDEEGLHRFVVPLVFLSHPLFLDLLKEAEKEYGFKHDGPITIPCGV 104

Query:   142 SEFEKVKTRIDAWDHCRSRKH-HRPH 166
              EF+ V+  ID   H   R+H H  H
Sbjct:   105 DEFKHVQEVIDEETH---RRHSHGGH 127

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2134598 AT4G00880 "AT4G00880" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 39/69 (56%), Positives = 51/69 (73%)

Query:    84 EVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPCRISE 143
             +VPKG LAV VG+ +++ R V +PV+YFNHPLFG+LLK+AE  +GF   G ITIPC + E
Sbjct:    27 KVPKGCLAVKVGQGEEQERFV-IPVMYFNHPLFGQLLKEAEEEFGFAQKGTITIPCHVEE 85

Query:   144 FEKVKTRID 152
             F  V+  ID
Sbjct:    86 FRYVQGLID 94

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 37/67 (55%), Positives = 47/67 (70%)

Query:    79 QEKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHP-GGITI 137
             Q++ + VPKGH+AVYVGE  +  +R  VP+ Y NHP F  LL +AE  +GFNHP GG+TI
Sbjct:    15 QKQQSRVPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLLSRAEEEFGFNHPIGGLTI 74

Query:   138 PCRISEF 144
             PCR   F
Sbjct:    75 PCREETF 81

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2079552 AT3G61900 "AT3G61900" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 36/69 (52%), Positives = 47/69 (68%)

Query:    84 EVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPCRISE 143
             +VPKG LA+ VG  ++E +R  VPV YFNHPLF +LL++AE  YGF   G ITIPC +  
Sbjct:    29 DVPKGCLAIKVGSKEEEKQRFVVPVFYFNHPLFMQLLREAEEEYGFEQKGTITIPCHVEV 88

Query:   144 FEKVKTRID 152
             F  V+  I+
Sbjct:    89 FRYVQDMIN 97

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2079389 SAUR29 "AT3G03820" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 40/75 (53%), Positives = 47/75 (62%)

Query:    78 GQEKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHP-GGIT 136
             G  K    PKG LAVYVGES  + +R  VPV Y N PLF  LL +AE  +GFNHP GG+T
Sbjct:    20 GTRKETSAPKGFLAVYVGESQRKKQRHLVPVSYLNQPLFQALLIKAEEEFGFNHPMGGLT 79

Query:   137 IPCRISEFEKVKTRI 151
             IPC    F  V ++I
Sbjct:    80 IPCPEDTFLTVTSQI 94

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: SAUR18 SAUR family protein (169 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	2e-31
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	6e-18
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	2e-16
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	1e-15

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  108 bits (272), Expect = 2e-31
 Identities = 44/107 (41%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 45  CKAMSKFLSMASCIRRGAKKLCFPSSNPGFIQLGQEKPAEVPKGHLAVYVGESDDEARRV 104
              + K  S    I   A      SS+           A+VPKGH AVYVGE   E RR 
Sbjct: 2   ASRLKKASSAKKWILSAASGRSRGSSSK-------SSSADVPKGHFAVYVGE---ETRRF 51

Query: 105 FVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRI 151
            VP+ Y NHPLF ELL +AE  +GF+  GG+TIPC +  FE +   +
Sbjct: 52  VVPISYLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 74.0 bits (181), Expect = 6e-18
 Identities = 36/62 (58%), Positives = 44/62 (70%), Gaps = 2/62 (3%)

Query: 85  VPKGHLAVYVGES-DDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHP-GGITIPCRIS 142
           VPKGH+AVYVGE  + E +R  VP+ + NHP F E L +AE  +GFNHP GG+TIPCR  
Sbjct: 35  VPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREE 94

Query: 143 EF 144
            F
Sbjct: 95  VF 96

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 70.5 bits (172), Expect = 2e-16
 Identities = 36/61 (59%), Positives = 42/61 (68%), Gaps = 2/61 (3%)

Query: 85  VPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHP-GGITIPCRISE 143
           VPKGH+AVYVGE   E +R  VP+ Y NHPLF E L +AE   GF+H  GG+TIPCR   
Sbjct: 39  VPKGHVAVYVGEQM-EKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREES 97

Query: 144 F 144
           F
Sbjct: 98  F 98

Length = 108

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 68.3 bits (167), Expect = 1e-15
 Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 3/58 (5%)

Query: 82  PAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNHPGGITIPC 139
           P +VPKGH  VYVGE+     R  VP+ +  HP F  LL+QAE  +GF+H  G+TIPC
Sbjct: 37  PLDVPKGHFPVYVGENRS---RYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPC 91

Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03220	105	uncharacterized protein; Provisional	99.97
PLN03219	108	uncharacterized protein; Provisional	99.97
PRK02899	197	adaptor protein; Provisional	84.95
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	84.77

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=219.61  Aligned_cols=93  Identities=38%  Similarity=0.687  Sum_probs=80.7

Q ss_pred             chHHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCCCCCCeEEEEEcccCCCceeEEEeeeccCchHHHHHHHhhHHh
Q 036854           47 AMSKFLSMASCIRRGAKKLCFPSSNPGFIQLGQEKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERV  126 (167)
Q Consensus        47 ~~~KL~~~~rKwqk~akrl~~~~s~~~~~~~~~~~~~~vpkG~~aVYVG~~~~~~rRfvVP~~yLnhPlF~eLL~~AeEE  126 (167)
                      .+..|++|.|+|.++++.     +  ++.  ....+.++|+||||||||+   +++||+||++|||||+|++||++||||
T Consensus        11 ~~~~~kq~l~r~~s~~~~-----~--~~~--~~~~~~~vpkG~~aVyVG~---~~~RfvVp~~~L~hP~F~~LL~~aeeE   78 (104)
T PLN03090         11 QTAMLKQILKRCSSLGKK-----Q--GYD--EDGLPLDVPKGHFPVYVGE---NRSRYIVPISFLTHPEFQSLLQQAEEE   78 (104)
T ss_pred             HHHHHHHHHHHHHHhccc-----C--Ccc--cccCCCCCCCCcEEEEECC---CCEEEEEEHHHcCCHHHHHHHHHHHHH
Confidence            367899999999988641     1  110  1125678999999999997   789999999999999999999999999


Q ss_pred             cCccCCCceeecCcHHHHHHHHHHH
Q 036854          127 YGFNHPGGITIPCRISEFEKVKTRI  151 (167)
Q Consensus       127 fGf~~~G~L~IPC~~~~Fe~vl~~i  151 (167)
                      |||+++|+|+||||+++||+++|+|
T Consensus        79 fGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         79 FGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             hCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            9999999999999999999999998

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=4.4e-34  Score=214.08  Aligned_cols=97  Identities=45%  Similarity=0.716  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCCCCCCeEEEEEcccCCCceeEEEeeeccCchHHHHHHHhhHHhc
Q 036854           48 MSKFLSMASCIRRGAKKLCFPSSNPGFIQLGQEKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVY  127 (167)
Q Consensus        48 ~~KL~~~~rKwqk~akrl~~~~s~~~~~~~~~~~~~~vpkG~~aVYVG~~~~~~rRfvVP~~yLnhPlF~eLL~~AeEEf  127 (167)
                      -.|..+.+++|+..+.......+.     ...++..++|+||||||||+   +++||+||++|||||+|++||++|||||
T Consensus         4 ~~k~~~~~~k~~~~~~~~~~~~~~-----~~~~~~~~vp~G~~~VyVG~---~~~Rfvvp~~~L~hp~f~~LL~~aeeEf   75 (100)
T PF02519_consen    4 RLKSLASAKKWQSRARSKSSSSSS-----SRSSSESDVPKGHFAVYVGE---ERRRFVVPVSYLNHPLFQELLEQAEEEF   75 (100)
T ss_pred             HHHHHHHHHhhhhhhhhccccccc-----ccccccCCCCCCeEEEEeCc---cceEEEechHHcCchhHHHHHHHHhhhc
Confidence            345566667888765311111110     01113468999999999997   7999999999999999999999999999


Q ss_pred             CccCCCceeecCcHHHHHHHHHHHh
Q 036854          128 GFNHPGGITIPCRISEFEKVKTRID  152 (167)
Q Consensus       128 Gf~~~G~L~IPC~~~~Fe~vl~~i~  152 (167)
                      ||+++|+|+||||+++||+++|+|+
T Consensus        76 G~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   76 GFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             CcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            9999999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=1.4e-31  Score=202.75  Aligned_cols=69  Identities=51%  Similarity=0.917  Sum_probs=63.3

Q ss_pred             CCCCCCCCeEEEEEcccC-CCceeEEEeeeccCchHHHHHHHhhHHhcCccC-CCceeecCcHHHHHHHHH
Q 036854           81 KPAEVPKGHLAVYVGESD-DEARRVFVPVIYFNHPLFGELLKQAERVYGFNH-PGGITIPCRISEFEKVKT  149 (167)
Q Consensus        81 ~~~~vpkG~~aVYVG~~~-~~~rRfvVP~~yLnhPlF~eLL~~AeEEfGf~~-~G~L~IPC~~~~Fe~vl~  149 (167)
                      .+.+|||||||||||+++ ++.+||+||++|||||+|++||++|||||||++ +|+|+||||++.|++++.
T Consensus        31 ~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         31 SSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             ccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence            466899999999999743 358999999999999999999999999999998 599999999999999975

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=9.4e-31  Score=199.10  Aligned_cols=70  Identities=53%  Similarity=0.935  Sum_probs=64.2

Q ss_pred             CCCCCCCCCeEEEEEcccCCCceeEEEeeeccCchHHHHHHHhhHHhcCccC-CCceeecCcHHHHHHHHHH
Q 036854           80 EKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYGFNH-PGGITIPCRISEFEKVKTR  150 (167)
Q Consensus        80 ~~~~~vpkG~~aVYVG~~~~~~rRfvVP~~yLnhPlF~eLL~~AeEEfGf~~-~G~L~IPC~~~~Fe~vl~~  150 (167)
                      +.+.++||||||||||++ ++++||+||++|||||+|++||++|||||||++ +|+|+||||++.|++++..
T Consensus        34 ~~~~~vpkGh~aVYVG~~-~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         34 TTSGLVPKGHVAVYVGEQ-MEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCCCeEEEEECCC-CCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence            356789999999999973 368999999999999999999999999999997 5999999999999999875

>PRK02899 adaptor protein; Provisional

Probab=84.95  E-value=0.74  Score=38.25  Aligned_cols=25  Identities=32%  Similarity=0.761  Sum_probs=21.9

Q ss_pred             chHHHHHHHhhHHhcCccCCCceee
Q 036854          113 HPLFGELLKQAERVYGFNHPGGITI  137 (167)
Q Consensus       113 hPlF~eLL~~AeEEfGf~~~G~L~I  137 (167)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            3578888999999999999999875

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=84.77  E-value=1.5  Score=31.06  Aligned_cols=54  Identities=11%  Similarity=-0.027  Sum_probs=42.2

Q ss_pred             ceeEEEeeeccC-c--hHHHHHHHhhHHhcCccCCCceeecCcHHHHHHHHHHHhcC
Q 036854          101 ARRVFVPVIYFN-H--PLFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAW  154 (167)
Q Consensus       101 ~rRfvVP~~yLn-h--PlF~eLL~~AeEEfGf~~~G~L~IPC~~~~Fe~vl~~i~~~  154 (167)
                      .+.|.++.+.|. +  ..|..|+........-+.+|.+-|-++...|++|+..+..+
T Consensus         7 G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    7 GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            489999999887 4  48899988652222234569999999999999999999885

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00