Citrus Sinensis ID: 036856

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MFEAGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRDE
Secondary Structure (PSIPRED)
ccccccEEEEEEccccHHHcccccccEEEEEEcccEEEEEEcccccEEEEEEEccccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccEHEEcccccHHHHccccccccEEEEccccEEEEEEcccccEEEEEEEccccccEEEcccccc
Coil and Loop (DISEMBL)
mfeagslqffsfGMSEAESLQFLSFGCFLLVEKGIQTFQrslpdgkvkqvfffdpdgnglevasrrde
Flexible Loop (DISEMBL)
MFEAGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVfffdpdgnglevasrrde
Low Complexity Region (SEG)
MFEAGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRDE
Disordered region (IsUnstruct)
*******QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFD**************
Disordered Region (DISOPRED)
****GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR****GKVKQVFFFDPDGNG*********
Disordered Region (DISEMBL)
MFEAGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL********
Disordered Region (DISPRO)
****GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFEAGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
18402873	135	lactoylglutathione lyase / glyoxalase I-	0.617	0.311	0.818	4e-11
21593078	135	unknown [Arabidopsis thaliana]	0.617	0.311	0.818	4e-11
42571011	113	lactoylglutathione lyase / glyoxalase I-	0.617	0.371	0.818	6e-11
449444112	145	PREDICTED: uncharacterized protein LOC10	0.558	0.262	0.815	6e-11
297822963	135	hypothetical protein ARALYDRAFT_482141 [	0.617	0.311	0.795	3e-10
297789936	135	hypothetical protein ARALYDRAFT_920158 [	0.617	0.311	0.795	3e-10
357480883	140	Lactoylglutathione lyase [Medicago trunc	0.558	0.271	0.763	8e-10
388493014	141	unknown [Lotus japonicus]	0.558	0.269	0.736	1e-09
255552165	140	lactoylglutathione lyase, putative [Rici	0.558	0.271	0.710	3e-07
224108031	140	predicted protein [Populus trichocarpa]	0.529	0.257	0.722	1e-06

>gi|18402873|ref|NP_565737.1| lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana] gi|16604547|gb|AAL24279.1| At2g32090/F22D22.16 [Arabidopsis thaliana] gi|18958038|gb|AAL79592.1| At2g32090/F22D22.16 [Arabidopsis thaliana] gi|20197625|gb|AAD15395.2| expressed protein [Arabidopsis thaliana] gi|330253539|gb|AEC08633.1| lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 2/44 (4%)

Query: 24  SFGCFL--LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65
           +F  FL  L EKGI+TFQ+SLPDGKVKQVFFFDPDGNGLEVASR
Sbjct: 91  NFDSFLHSLKEKGIETFQKSLPDGKVKQVFFFDPDGNGLEVASR 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593078|gb|AAM65027.1| unknown [Arabidopsis thaliana]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 2/44 (4%)

Query: 24  SFGCFL--LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65
           +F  FL  L EKGI+TFQ+SLPDGKVKQVFFFDPDGNGLEVASR
Sbjct: 91  NFDSFLHSLKEKGIETFQKSLPDGKVKQVFFFDPDGNGLEVASR 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571011|ref|NP_973579.1| lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana] gi|330253540|gb|AEC08634.1| lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 2/44 (4%)

Query: 24  SFGCFL--LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65
           +F  FL  L EKGI+TFQ+SLPDGKVKQVFFFDPDGNGLEVASR
Sbjct: 69  NFDSFLHSLKEKGIETFQKSLPDGKVKQVFFFDPDGNGLEVASR 112

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444112|ref|XP_004139819.1| PREDICTED: uncharacterized protein LOC101211159 [Cucumis sativus] gi|449492582|ref|XP_004159039.1| PREDICTED: uncharacterized LOC101211159 [Cucumis sativus]

 Score = 71.2 bits (173), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 36/38 (94%)

Query: 30  LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRD 67
           L EKGIQTF+++LP+GKVKQVFFFDPDGNGLE+ASR D
Sbjct: 108 LKEKGIQTFEKTLPNGKVKQVFFFDPDGNGLEIASRED 145

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822963|ref|XP_002879364.1| hypothetical protein ARALYDRAFT_482141 [Arabidopsis lyrata subsp. lyrata] gi|297325203|gb|EFH55623.1| hypothetical protein ARALYDRAFT_482141 [Arabidopsis lyrata subsp. lyrata]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 38/44 (86%), Gaps = 2/44 (4%)

Query: 24  SFGCFL--LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65
           +F  FL  L EK I+TFQ+SLPDGKVKQVFFFDPDGNGLEVASR
Sbjct: 91  NFDSFLHSLKEKRIETFQKSLPDGKVKQVFFFDPDGNGLEVASR 134

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297789936|ref|XP_002862888.1| hypothetical protein ARALYDRAFT_920158 [Arabidopsis lyrata subsp. lyrata] gi|297308652|gb|EFH39147.1| hypothetical protein ARALYDRAFT_920158 [Arabidopsis lyrata subsp. lyrata]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 38/44 (86%), Gaps = 2/44 (4%)

Query: 24  SFGCFL--LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65
           +F  FL  L EK I+TFQ+SLPDGKVKQVFFFDPDGNGLEVASR
Sbjct: 91  NFDSFLHSLKEKRIETFQKSLPDGKVKQVFFFDPDGNGLEVASR 134

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480883|ref|XP_003610727.1| Lactoylglutathione lyase [Medicago truncatula] gi|355512062|gb|AES93685.1| Lactoylglutathione lyase [Medicago truncatula]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 36/38 (94%)

Query: 30  LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRD 67
           L +KGI+TF++SLP+GK+KQVFFFDPDGNGLEVAS+ D
Sbjct: 102 LKDKGIETFEKSLPNGKIKQVFFFDPDGNGLEVASKED 139

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493014|gb|AFK34573.1| unknown [Lotus japonicus]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 36/38 (94%)

Query: 30  LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRD 67
           L +KG++TF++SLP+GK+KQVFFFDPDGNGLEVAS+ D
Sbjct: 104 LKDKGVETFEKSLPNGKIKQVFFFDPDGNGLEVASKED 141

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552165|ref|XP_002517127.1| lactoylglutathione lyase, putative [Ricinus communis] gi|223543762|gb|EEF45290.1| lactoylglutathione lyase, putative [Ricinus communis]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 32/38 (84%)

Query: 30  LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRD 67
           L +KGI+TFQRS+P   V+QVFFFDPDGNGLEV SR +
Sbjct: 103 LQDKGIKTFQRSVPGRPVRQVFFFDPDGNGLEVQSREE 140

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108031|ref|XP_002314695.1| predicted protein [Populus trichocarpa] gi|222863735|gb|EEF00866.1| predicted protein [Populus trichocarpa]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 30  LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65
           L +KGI+TFQRS  +  ++QVFFFDPDGNGLEVASR
Sbjct: 103 LKDKGIETFQRSALNRPIRQVFFFDPDGNGLEVASR 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
TAIR|locus:2045482	135	AT2G32090 "AT2G32090" [Arabido	0.617	0.311	0.818	1.7e-15

TAIR|locus:2045482 AT2G32090 "AT2G32090" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 36/44 (81%), Positives = 39/44 (88%)

Query:    24 SFGCFL--LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65
             +F  FL  L EKGI+TFQ+SLPDGKVKQVFFFDPDGNGLEVASR
Sbjct:    91 NFDSFLHSLKEKGIETFQKSLPDGKVKQVFFFDPDGNGLEVASR 134

GO:0004462 "lactoylglutathione lyase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=ISS

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT2G32090 lactoylglutathione lyase family protein / glyoxalase I family protein; lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN- lactoylglutathione lyase activity; INVOLVED IN- carbohydrate metabolic process; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro-IPR004360); BEST Arabidopsis thaliana protein match is- lactoylglutathione lyase family protein / glyoxalase I family protein (TAIR-AT2G28420.1); Has 357 B [...] (135 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	68
cd07245	114	cd07245, Glo_EDI_BRP_like_9, This conserved domain	3e-07

>gnl|CDD|176669 cd07245, Glo_EDI_BRP_like_9, This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

 Score = 43.0 bits (102), Expect = 3e-07
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 30  LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEV 62
           L   G+   +  +P   V+Q+F  DPDGN +E+
Sbjct: 82  LKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
cd08353	142	Glo_EDI_BRP_like_7 This conserved domain belongs t	99.25
cd07241	125	Glo_EDI_BRP_like_3 This conserved domain belongs t	99.25
PRK10291	129	glyoxalase I; Provisional	99.24
cd09012	124	Glo_EDI_BRP_like_24 This conserved domain belongs	99.21
cd08364	131	FosX FosX, a fosfomycin resistance protein, cataly	99.21
PRK11478	129	putative lyase; Provisional	99.21
cd08357	125	Glo_EDI_BRP_like_18 This conserved domain belongs	99.21
cd08351	123	ChaP_like ChaP, an enzyme involved in the biosynth	99.19
cd07242	128	Glo_EDI_BRP_like_6 This conserved domain belongs t	99.18
PRK04101	139	fosfomycin resistance protein FosB; Provisional	99.17
cd07252	120	BphC1-RGP6_N_like N-terminal domain of 2,3-dihydro	99.17
cd07243	143	2_3_CTD_C C-terminal domain of catechol 2,3-dioxyg	99.16
cd07265	122	2_3_CTD_N N-terminal domain of catechol 2,3-dioxyg	99.16
cd08354	122	Glo_EDI_BRP_like_13 This conserved domain belongs	99.16
cd08344	112	MhqB_like_N N-terminal domain of MhqB, a type I ex	99.15
cd08347	157	PcpA_C_like C-terminal domain of Sphingobium chlor	99.15
cd07258	141	PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cuma	99.15
cd08363	131	FosB FosB, a fosfomycin resistance protein, cataly	99.14
cd09013	121	BphC-JF8_N_like N-terminal, non-catalytic, domain	99.13
cd08345	113	Fosfomycin_RP Fosfomycin resistant protein; inhibi	99.11
cd07237	154	BphC1-RGP6_C_like C-terminal domain of 2,3-dihydro	99.1
cd07233	121	Glyoxalase_I Glyoxalase I catalyzes the isomerizat	99.1
PRK06724	128	hypothetical protein; Provisional	99.09
cd07255	125	Glo_EDI_BRP_like_12 This conserved domain belongs	99.07
cd08360	134	MhqB_like_C C-terminal domain of Burkholderia sp.	99.06
cd07253	125	Glo_EDI_BRP_like_2 This conserved domain belongs t	99.06
cd08342	136	HPPD_N_like N-terminal domain of 4-hydroxyphenylpy	99.05
cd07245	114	Glo_EDI_BRP_like_9 This conserved domain belongs t	99.03
cd07244	121	FosA FosA, a Fosfomycin resistance protein, cataly	99.03
PLN02367	233	lactoylglutathione lyase	99.03
cd09011	120	Glo_EDI_BRP_like_23 This conserved domain belongs	99.03
cd07266	121	HPCD_N_class_II N-terminal domain of 3,4-dihydroxy	99.03
cd08343	131	ED_TypeI_classII_C C-terminal domain of type I, cl	99.03
TIGR00068	150	glyox_I lactoylglutathione lyase. Glyoxylase I is	99.02
PF12681	108	Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B	99.01
cd07254	120	Glo_EDI_BRP_like_20 This conserved domain belongs	99.0
TIGR03645	162	glyox_marine lactoylglutathione lyase family prote	99.0
cd07240	117	ED_TypeI_classII_N N-terminal domain of type I, cl	99.0
cd08361	124	PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cuma	98.99
cd07239	144	BphC5-RK37_C_like C-terminal, catalytic, domain of	98.99
cd07263	119	Glo_EDI_BRP_like_16 This conserved domain belongs	98.99
cd08346	126	PcpA_N_like N-terminal domain of Sphingobium chlor	98.99
PLN03042	185	Lactoylglutathione lyase; Provisional	98.99
cd07261	114	Glo_EDI_BRP_like_11 This conserved domain belongs	98.98
cd08362	120	BphC5-RrK37_N_like N-terminal, non-catalytic, doma	98.97
TIGR03211	303	catechol_2_3 catechol 2,3 dioxygenase. Members of	98.97
cd07257	153	THT_oxygenase_C The C-terminal domain of 2,4,5-Tri	98.95
cd07256	161	HPCD_C_class_II C-terminal domain of 3,4-dihydroxy	98.95
cd07262	123	Glo_EDI_BRP_like_19 This conserved domain belongs	98.94
cd07267	113	THT_Oxygenase_N N-terminal domain of 2,4,5-trihydr	98.92
cd07247	114	SgaA_N_like N-terminal domain of Streptomyces gris	98.92
cd07238	112	Glo_EDI_BRP_like_5 This conserved domain belongs t	98.9
cd08348	134	BphC2-C3-RGP6_C_like The single-domain 2,3-dihydro	98.9
cd08352	125	Glo_EDI_BRP_like_1 This conserved domain belongs t	98.9
cd09014	166	BphC-JF8_C_like C-terminal, catalytic, domain of B	98.9
cd07246	122	Glo_EDI_BRP_like_8 This conserved domain belongs t	98.87
cd08359	119	Glo_EDI_BRP_like_22 This conserved domain belongs	98.86
cd07235	122	MRD Mitomycin C resistance protein (MRD). Mitomyci	98.85
PF00903	128	Glyoxalase: Glyoxalase/Bleomycin resistance protei	98.84
KOG2944	170	consensus Glyoxalase [Carbohydrate transport and m	98.84
TIGR02295	294	HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. T	98.84
TIGR03213	286	23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase	98.82
cd08350	120	BLMT_like BLMT, a bleomycin resistance protein enc	98.82
TIGR03081	128	metmalonyl_epim methylmalonyl-CoA epimerase. Membe	98.8
cd07251	121	Glo_EDI_BRP_like_10 This conserved domain belongs	98.79
cd08355	122	Glo_EDI_BRP_like_14 This conserved domain belongs	98.76
cd08349	112	BLMA_like Bleomycin binding protein (BLMA) and sim	98.76
PLN02300	286	lactoylglutathione lyase	98.76
TIGR03211	303	catechol_2_3 catechol 2,3 dioxygenase. Members of	98.75
cd07264	125	Glo_EDI_BRP_like_15 This conserved domain belongs	98.75
cd06587	112	Glo_EDI_BRP_like This domain superfamily is found	98.73
cd08356	113	Glo_EDI_BRP_like_17 This conserved domain belongs	98.71
TIGR02295	294	HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. T	98.71
TIGR03213	286	23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase	98.67
cd07249	128	MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, als	98.58
cd08358	127	Glo_EDI_BRP_like_21 This conserved domain belongs	98.56
PLN02300	286	lactoylglutathione lyase	98.34
COG2514	265	Predicted ring-cleavage extradiol dioxygenase [Gen	98.2
COG3565	138	Predicted dioxygenase of extradiol dioxygenase fam	97.66
COG0346	138	GloA Lactoylglutathione lyase and related lyases [	97.4
cd06588	128	PhnB_like Escherichia coli PhnB and similar protei	97.02
PF13670	83	PepSY_2: Peptidase propeptide and YPEB domain This	96.99
COG3607	133	Predicted lactoylglutathione lyase [General functi	96.61
COG3324	127	Predicted enzyme related to lactoylglutathione lya	96.21
PF13669	109	Glyoxalase_4: Glyoxalase/Bleomycin resistance prot	96.18
PF13669	109	Glyoxalase_4: Glyoxalase/Bleomycin resistance prot	96.13
cd07250	191	HPPD_C_like C-terminal domain of 4-hydroxyphenylpy	94.05
COG2764	136	PhnB Uncharacterized protein conserved in bacteria	92.35
PF14133	250	DUF4300: Domain of unknown function (DUF4300)	91.31
TIGR01263	353	4HPPD 4-hydroxyphenylpyruvate dioxygenase. This pr	90.14
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	89.71
PF03975	114	CheD: CheD chemotactic sensory transduction; Inter	89.35
PRK01037	357	trmD tRNA (guanine-N(1)-)-methyltransferase/unknow	88.62
COG3185	363	4-hydroxyphenylpyruvate dioxygenase and related he	87.25
PLN02875	398	4-hydroxyphenylpyruvate dioxygenase	86.18
PRK13494	163	chemoreceptor glutamine deamidase CheD; Provisiona	86.15
cd07250	191	HPPD_C_like C-terminal domain of 4-hydroxyphenylpy	85.65
PRK13490	162	chemoreceptor glutamine deamidase CheD; Provisiona	85.11
PRK13495	159	chemoreceptor glutamine deamidase CheD; Provisiona	84.24
PRK13498	167	chemoreceptor glutamine deamidase CheD; Provisiona	83.5
cd08353	142	Glo_EDI_BRP_like_7 This conserved domain belongs t	83.09
PRK14707	2710	hypothetical protein; Provisional	82.52
TIGR03645	162	glyox_marine lactoylglutathione lyase family prote	82.42
PRK13497	184	chemoreceptor glutamine deamidase CheD; Provisiona	82.16
PRK13488	157	chemoreceptor glutamine deamidase CheD; Provisiona	81.94
PRK13487	201	chemoreceptor glutamine deamidase CheD; Provisiona	81.75
PRK13491	199	chemoreceptor glutamine deamidase CheD; Provisiona	81.31
cd07263	119	Glo_EDI_BRP_like_16 This conserved domain belongs	80.5
PRK13493	213	chemoreceptor glutamine deamidase CheD; Provisiona	80.15

>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.25  E-value=2.7e-11  Score=75.39  Aligned_cols=54  Identities=15%  Similarity=0.250  Sum_probs=45.5

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .++|+||.++      .++++.++|+++|+++...+.. ..+.+++|++|||||.|||...
T Consensus        87 g~~hia~~v~------d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~  141 (142)
T cd08353          87 GLRRVMFAVD------DIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ  141 (142)
T ss_pred             CceEEEEEeC------CHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence            4789999997      5899999999999999764433 2568999999999999999863

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.25  E-value=4.6e-11  Score=71.55  Aligned_cols=56  Identities=14%  Similarity=0.209  Sum_probs=44.4

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEe
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      +.+.|++|.++.   ...++++.++|+++|+++...+. ...+.++.|+.|||||.|||.
T Consensus        69 ~g~~hi~f~v~~---~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~  125 (125)
T cd07241          69 TGWAHLAFSVGS---KEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT  125 (125)
T ss_pred             CceEEEEEECCC---HHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence            356899999962   45699999999999999976332 334567889999999999983

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>PRK10291 glyoxalase I; Provisional

Probab=99.24  E-value=4.1e-11  Score=73.98  Aligned_cols=55  Identities=16%  Similarity=0.312  Sum_probs=45.3

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ++.|++|.++      .++++.++|+++|+++...  +.+++..+++||+|||||.|||+...
T Consensus        65 ~~~hlaf~V~------d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~  121 (129)
T PRK10291         65 AYGHIALSVD------NAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK  121 (129)
T ss_pred             CeeEEEEEeC------CHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence            5789999997      3689999999999998643  34455567899999999999999754

>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.21  E-value=5.3e-11  Score=72.74  Aligned_cols=56  Identities=20%  Similarity=0.094  Sum_probs=45.4

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      +..|++|.++   +.+.++++.++|+++|+++...+.+....+++||+|||||.|||..
T Consensus        68 ~~~~l~f~v~---~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~  123 (124)
T cd09012          68 TEVLISLSAD---SREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW  123 (124)
T ss_pred             CeEEEEEeCC---CHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence            3568888887   3456999999999999999765544455688999999999999974

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1

Probab=99.21  E-value=5.2e-11  Score=74.46  Aligned_cols=57  Identities=14%  Similarity=0.199  Sum_probs=46.2

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeee-eCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS-LPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~-~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.|+||.++    ...+++..++|+++|+++.... .+.+..+++||.|||||.|||.+..
T Consensus        66 ~~~Hiaf~v~----~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~~  123 (131)
T cd08364          66 TYNHIAFKIS----DSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTGT  123 (131)
T ss_pred             CceEEEEEcC----HHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecCC
Confidence            4789999997    3579999999999999986532 2333468999999999999998653

This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>PRK11478 putative lyase; Provisional

Probab=99.21  E-value=8e-11  Score=71.69  Aligned_cols=53  Identities=23%  Similarity=0.308  Sum_probs=43.6

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeee-eCCCCeeEEEEeCCCCCeEEEee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS-LPDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~-~p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      .+.|++|.++      .++++.++|+++|+++.... .+..+.+++||+|||||.|||..
T Consensus        75 g~~hi~f~v~------d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~  128 (129)
T PRK11478         75 GLRHLAFSVD------DIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE  128 (129)
T ss_pred             ceeEEEEEeC------CHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence            4679999887      48899999999999986432 24456789999999999999975

>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.21  E-value=5.3e-11  Score=71.63  Aligned_cols=56  Identities=21%  Similarity=0.300  Sum_probs=44.3

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-----CCCCeeEEEEeCCCCCeEEEeee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-----PDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-----p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .+.|++|.+.    ...++++.++|+++|+++...+.     +.++.+.+|+.|||||.|||..+
T Consensus        65 ~~~h~~~~~~----~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~  125 (125)
T cd08357          65 PVPHFGLILS----EEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF  125 (125)
T ss_pred             CCceEEEEEe----HHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence            4578888887    46699999999999999964322     12346899999999999999753

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins

Probab=99.19  E-value=1.2e-10  Score=71.45  Aligned_cols=58  Identities=28%  Similarity=0.410  Sum_probs=46.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--------CCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--------PDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--------p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ....|++|.++.    ..++++.++|+++|+++...+.        ...+.+.+||+|||||.|||++.+
T Consensus        57 ~~~~h~a~~v~~----~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~  122 (123)
T cd08351          57 IPPQHYAFLVSE----EEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP  122 (123)
T ss_pred             CCcceEEEEeCH----HHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence            456899999883    4599999999999999844211        124569999999999999999763

ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.18  E-value=1.3e-10  Score=70.73  Aligned_cols=57  Identities=21%  Similarity=0.285  Sum_probs=47.0

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC----CCCeeEEEEeCCCCCeEEEeee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP----DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p----~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .+.|+||.++.   ...++++.++|+++|+++......    ..+.+.+|+.|||||.|||+++
T Consensus        68 g~~hia~~v~~---~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~  128 (128)
T cd07242          68 GLHHLAFRAPS---REAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP  128 (128)
T ss_pred             CeeEEEEEcCC---HHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence            36899999972   456999999999999999775442    3567899999999999999874

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>PRK04101 fosfomycin resistance protein FosB; Provisional

Probab=99.17  E-value=9.8e-11  Score=73.69  Aligned_cols=58  Identities=19%  Similarity=0.309  Sum_probs=46.6

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +++.|+||.++    -..++++.++|+++|+++...+.+ ..+.+++|+.|||||.|||....
T Consensus        62 ~~~~hiaf~v~----~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~  120 (139)
T PRK04101         62 QSYTHIAFSIE----EEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGT  120 (139)
T ss_pred             CCeeEEEEEec----HHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeCC
Confidence            45789999997    356999999999999998543322 23569999999999999998653

>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1

Probab=99.17  E-value=1.4e-10  Score=70.96  Aligned_cols=60  Identities=23%  Similarity=0.232  Sum_probs=47.4

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee----CCCCeeEEEEeCCCCCeEEEeeecCC
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL----PDGKVKQVFFFDPDGNGLEVASRRDE   68 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~----p~~~~~QiF~~DPDGn~IEL~f~~~~   68 (68)
                      .+.|++|.++   +.+.|+++.++|+++|+++...+.    +.+..+.+||.|||||.|||.+-..|
T Consensus        57 ~~~~~~f~v~---~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~~~  120 (120)
T cd07252          57 DLAYAGWEVA---DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGPKE  120 (120)
T ss_pred             ceeEEEEEEC---CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecccC
Confidence            4678998886   346799999999999999975332    22334789999999999999987654

13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-

>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase

Probab=99.16  E-value=1.3e-10  Score=74.23  Aligned_cols=57  Identities=23%  Similarity=0.300  Sum_probs=45.4

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      +.+.|+||.++   ++..+.++.++|+++|+++...+.  ..++.+.+||+|||||.|||..
T Consensus        66 ~~~~Hiaf~v~---d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~  124 (143)
T cd07243          66 GKLHHFSFFLE---SWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA  124 (143)
T ss_pred             CCceEEEEEcC---CHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence            56789999997   466788899999999999864322  2134578999999999999964

This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.

>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase

Probab=99.16  E-value=2.6e-10  Score=69.33  Aligned_cols=59  Identities=20%  Similarity=0.188  Sum_probs=45.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..+.|++|.++   +...++++.++|+++|+++...+.  +....+++||.|||||.|||.+..
T Consensus        60 ~~~~hiaf~v~---~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~  120 (122)
T cd07265          60 AGLDFMGFKVL---DDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK  120 (122)
T ss_pred             CCeeEEEEEeC---CHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence            35689999986   244689999999999999865322  223347899999999999998754

This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do

>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.16  E-value=1.6e-10  Score=69.28  Aligned_cols=56  Identities=27%  Similarity=0.297  Sum_probs=46.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      ..+.|++|.++    ...++++.++|+++|+++........+.+++|+.|||||.|||.+
T Consensus        66 ~~~~~~~~~v~----~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~  121 (122)
T cd08354          66 SGPGHFAFAIP----AEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELAT  121 (122)
T ss_pred             CCccEEEEEcC----HHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEec
Confidence            45789999987    366999999999999998765443455688999999999999986

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins

Probab=99.15  E-value=1.3e-10  Score=70.17  Aligned_cols=57  Identities=26%  Similarity=0.311  Sum_probs=45.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..+.|++|.++    ...++++.++|+++|+++.....+ .+.+++||.|||||.|||.+..
T Consensus        54 ~~~~~~~~~~~----~~d~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~DP~Gn~iel~~~~  110 (112)
T cd08344          54 KRLAYLSFGIF----EDDFAAFARHLEAAGVALAAAPPG-ADPDGVWFRDPDGNLLQVKVAE  110 (112)
T ss_pred             CceeeEEEEeE----hhhHHHHHHHHHHcCCceecCCCc-CCCCEEEEECCCCCEEEEecCC
Confidence            34678888876    456999999999999998654323 3457899999999999998653

This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins

Probab=99.15  E-value=1.6e-10  Score=75.30  Aligned_cols=58  Identities=19%  Similarity=0.205  Sum_probs=47.1

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +.+.|++|.++   +...++++.++|+++|+.+... ...+..+++||+|||||.|||..+.
T Consensus        64 ~~l~Hiaf~v~---d~~dvd~~~~~L~~~Gv~~~~~-~~~~~~~s~yf~DPdG~~iEl~~~~  121 (157)
T cd08347          64 GTVHHVAFRVP---DDEELEAWKERLEALGLPVSGI-VDRFYFKSLYFREPGGILFEIATDG  121 (157)
T ss_pred             CceEEEEEECC---CHHHHHHHHHHHHHCCCCcccc-cccccEEEEEEECCCCcEEEEEECC
Confidence            56789999998   3456999999999999987542 2334568999999999999999764

The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC)

Probab=99.15  E-value=2.2e-10  Score=73.52  Aligned_cols=60  Identities=13%  Similarity=0.280  Sum_probs=48.6

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.+.|+||.++   +...++++.++|+++|+++...  ..+.++.+++|++|||||.|||.+..
T Consensus        54 ~~gl~Hiaf~v~---~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~  115 (141)
T cd07258          54 SSHFHHVNFMVT---DIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM  115 (141)
T ss_pred             CCceEEEEEECC---CHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence            357899999988   3456899999999999998532  33446678899999999999998754

This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin

Probab=99.14  E-value=1.2e-10  Score=72.95  Aligned_cols=57  Identities=26%  Similarity=0.392  Sum_probs=46.1

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +++.|+||.++.    ..|+++.++|+++|+++.....+. .+.+++||.|||||.|||.+.
T Consensus        58 ~~~~hiaf~v~~----~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~  115 (131)
T cd08363          58 QSYTHIAFTIED----SEFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTG  115 (131)
T ss_pred             ccceEEEEEecH----HHHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecC
Confidence            457899999983    469999999999999986433222 356899999999999999875

This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases

>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp

Probab=99.13  E-value=3.1e-10  Score=69.06  Aligned_cols=58  Identities=24%  Similarity=0.209  Sum_probs=44.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee-eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..+.|+||.++   +...++++.++|+++|+++... ..+ +..+.+||+|||||.|||.+..
T Consensus        61 ~~~~h~af~v~---~~~~v~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DPdG~~iEl~~~~  119 (121)
T cd09013          61 AGLGHIAWRAS---SPEALERRVAALEASGLGIGWIEGDP-GHGKAYRFRSPDGHPMELYWEV  119 (121)
T ss_pred             CceEEEEEEcC---CHHHHHHHHHHHHHcCCccccccCCC-CCcceEEEECCCCCEEEEEEec
Confidence            35789999986   3456999999999999998432 222 3346799999999999999754

JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C

>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin

Probab=99.11  E-value=2.4e-10  Score=68.01  Aligned_cols=56  Identities=20%  Similarity=0.342  Sum_probs=44.6

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeee-eCCCCeeEEEEeCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS-LPDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~-~p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      +...|++|.++    -..++++.++|+++|+++.... .+....+.+|++|||||.||+..
T Consensus        54 ~~~~hiaf~v~----~~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~  110 (113)
T cd08345          54 RTYTHIAFQIQ----SEEFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA  110 (113)
T ss_pred             CCccEEEEEcC----HHHHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence            34679999998    3469999999999999986432 22234589999999999999985

This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1

Probab=99.10  E-value=3.1e-10  Score=73.19  Aligned_cols=58  Identities=12%  Similarity=0.172  Sum_probs=47.7

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +.+.|++|.++   ....|+++.++|+++|+++...  ..+.++.+++|+.|||||.|||.+.
T Consensus        72 ~g~~Hiaf~V~---d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~  131 (154)
T cd07237          72 KRIHHLMLEVT---SLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG  131 (154)
T ss_pred             ceeEEEEEEcC---CHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence            56889999997   3556899999999999998643  2344677899999999999999764

13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi

>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione

Probab=99.10  E-value=5e-10  Score=67.02  Aligned_cols=52  Identities=23%  Similarity=0.344  Sum_probs=44.0

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      ++.|++|.++      .++++.++|+++|+.+...+.+..+.+.+||.|||||.|||.
T Consensus        70 ~~~~i~~~v~------did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~  121 (121)
T cd07233          70 GFGHLAFAVD------DVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI  121 (121)
T ss_pred             CeEEEEEEeC------CHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence            5679999987      389999999999999977655555567899999999999984

Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly

>PRK06724 hypothetical protein; Provisional

Probab=99.09  E-value=6.2e-10  Score=70.58  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=46.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--C--CCCeeEEEEeCCCCCeEEEeeecC
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--P--DGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p--~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      ....|+||.+.   +-..+++..++|+++|+++...+.  +  ..+.+.+||.|||||.|||.+.++
T Consensus        62 ~g~~h~af~v~---~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~~  125 (128)
T PRK06724         62 LGPRHICYQAI---NRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTPN  125 (128)
T ss_pred             CCceeEEEecC---ChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCCC
Confidence            35789999974   244689999999999999854322  2  245688999999999999987653

>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.07  E-value=7.9e-10  Score=66.79  Aligned_cols=58  Identities=28%  Similarity=0.369  Sum_probs=44.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +.+.|++|.++   +-+.+++..++|+++|+++.... .....+.+|+.|||||.|||....
T Consensus        63 ~~~~hi~f~v~---~~~~v~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~DPdG~~iEi~~~~  120 (125)
T cd07255          63 TGLYHFAILLP---SRADLAAALRRLIELGIPLVGAS-DHLVSEALYLSDPEGNGIEIYADR  120 (125)
T ss_pred             CcEEEEEEECC---CHHHHHHHHHHHHHcCCceeccc-cccceeEEEEECCCCCEEEEEEec
Confidence            34679999997   23458999999999999885532 223347899999999999998654

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp

Probab=99.06  E-value=5.3e-10  Score=69.82  Aligned_cols=58  Identities=19%  Similarity=0.222  Sum_probs=45.7

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEe--eeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ--RSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~--~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +.+.|+||.++   .+..+.++.++|+++|+++..  ...+.++.+++||.|||||.|||...
T Consensus        61 ~g~~hiaf~v~---d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~  120 (134)
T cd08360          61 AGFHHAAFEVG---DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGAD  120 (134)
T ss_pred             CcceEEEEEeC---CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcc
Confidence            56889999997   355677777899999999853  23344566889999999999999854

NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.06  E-value=8e-10  Score=65.74  Aligned_cols=55  Identities=22%  Similarity=0.337  Sum_probs=43.5

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC--C--CCeeEEEEeCCCCCeEEEeee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP--D--GKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p--~--~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ...|++|.++.    . ++++.++|+++|+++...+.+  .  +..+.+||.|||||.||+.++
T Consensus        67 ~~~hi~~~~~~----~-~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~  125 (125)
T cd07253          67 GSDDLCLITEP----P-IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY  125 (125)
T ss_pred             CCceEEEEecc----c-HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence            46799998872    2 899999999999998654332  1  235889999999999999864

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS)

Probab=99.05  E-value=1.1e-09  Score=68.75  Aligned_cols=57  Identities=12%  Similarity=0.097  Sum_probs=47.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeeecC
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      ..+.|++|.++      .++++.++|+++|+++...+.. ..+.+.+|++|||||.|||.....
T Consensus        68 ~g~~hia~~V~------Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~  125 (136)
T cd08342          68 DGVCDVAFRVD------DAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKG  125 (136)
T ss_pred             CceEEEEEEeC------CHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecCC
Confidence            46789999987      4999999999999999654333 467899999999999999997543

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su

>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.03  E-value=6.5e-10  Score=64.51  Aligned_cols=52  Identities=29%  Similarity=0.425  Sum_probs=43.1

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEE
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEV   62 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL   62 (68)
                      ++..|++|.++      .++++.++|+++|+++.....+..+.+.+++.|||||.|||
T Consensus        63 ~~~~~~~~~v~------d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~  114 (114)
T cd07245          63 GRDDHIAFRVD------DLDAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL  114 (114)
T ss_pred             cccceEEEEeC------CHHHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence            45779999887      28899999999999997655444456789999999999996

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.

>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive

Probab=99.03  E-value=7.1e-10  Score=67.75  Aligned_cols=57  Identities=21%  Similarity=0.380  Sum_probs=45.3

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.+.|++|.++    ...++++.++|+++|+++....  ....+.+||.|||||.||+.+-+
T Consensus        55 ~~~~~hi~f~v~----~~dl~~~~~~l~~~G~~~~~~~--~~~~~~~~f~DPdG~~ie~~~~~  111 (121)
T cd07244          55 AKDYTHYAFSVS----EEDFASLKEKLRQAGVKEWKEN--TSEGDSFYFLDPDGHKLELHVGS  111 (121)
T ss_pred             CCCeeeEEEEeC----HHHHHHHHHHHHHcCCcccCCC--CCCccEEEEECCCCCEEEEEeCC
Confidence            356789999987    3469999999999999985432  22237899999999999998754

This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>PLN02367 lactoylglutathione lyase

Probab=99.03  E-value=1.3e-09  Score=77.00  Aligned_cols=55  Identities=16%  Similarity=0.236  Sum_probs=46.1

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.|++|.++      .+++++++|+++|+++...+......+.+|++|||||.|||..+.
T Consensus       169 G~~HIaf~Vd------DVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~  223 (233)
T PLN02367        169 GFGHIGITVD------DVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK  223 (233)
T ss_pred             CceEEEEEcC------CHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence            5889999887      599999999999999976544444467889999999999998754

>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.03  E-value=1e-09  Score=66.68  Aligned_cols=52  Identities=17%  Similarity=0.019  Sum_probs=40.1

Q ss_pred             eeEEEecChhhccccHHHHHHHHHHcCc-eEEeeee-CCCCeeEEEEeCCCCCeEEEeee
Q 036856            8 QFFSFGMSEAESLQFLSFGCFLLVEKGI-QTFQRSL-PDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI-~~~~~~~-p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .|++|.++      .++++.++|+++|+ ++...+. ...+.+++||+|||||.|||..+
T Consensus        66 ~~l~~~v~------dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~  119 (120)
T cd09011          66 FELYFEEE------DFDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES  119 (120)
T ss_pred             eEEEEEeh------hhHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence            47778665      59999999999985 6644322 22456999999999999999864

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases

Probab=99.03  E-value=1.2e-09  Score=65.92  Aligned_cols=59  Identities=20%  Similarity=0.150  Sum_probs=45.8

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +.+.|++|.++   ....++++.++|+++|+++...  ..+.+..+.+|+.|||||.||+.+.-
T Consensus        59 ~~~~hi~~~v~---~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~  119 (121)
T cd07266          59 AGLGHIAFRVR---SEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM  119 (121)
T ss_pred             CceeEEEEECC---CHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence            45789999885   2456999999999999999643  22333347899999999999998753

This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ

>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain

Probab=99.03  E-value=1.5e-09  Score=67.21  Aligned_cols=60  Identities=25%  Similarity=0.304  Sum_probs=47.4

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEeeec
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.+.|++|.++.   ...++++.++|+++|+++...+.  +.+..+++||.|||||.|||....
T Consensus        57 ~~~~~hl~~~v~d---~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~  118 (131)
T cd08343          57 RPGLHHVAFEVES---LDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEM  118 (131)
T ss_pred             CCCeeEEEEEcCC---HHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence            4678899999872   44588899999999999865332  334568899999999999998654

This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are

>TIGR00068 glyox_I lactoylglutathione lyase

Probab=99.02  E-value=1.4e-09  Score=69.11  Aligned_cols=56  Identities=20%  Similarity=0.348  Sum_probs=46.1

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeeecC
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      ++.|++|.++      .++++.++|+++|+++...+  .+.+..+.+||.|||||.|||.....
T Consensus        86 g~~hi~f~v~------dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~  143 (150)
T TIGR00068        86 GFGHIAIGVD------DVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS  143 (150)
T ss_pred             ceeEEEEecC------CHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence            5779999997      48899999999999986543  45555678999999999999997653

Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.

>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A

Probab=99.01  E-value=3.7e-09  Score=62.25  Aligned_cols=53  Identities=23%  Similarity=0.281  Sum_probs=40.3

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee-eeCCCCeeEEEEeCCCCCeEEEe
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      ++..|++|.+      ..++++.++|+++|+++... .....+.+.+++.|||||.|||+
T Consensus        55 ~~~~~~~~~v------~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~  108 (108)
T PF12681_consen   55 GGGFHLCFEV------EDVDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC  108 (108)
T ss_dssp             SSEEEEEEEE------SHHHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred             CceeEEEEEE------cCHHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence            4566777766      57999999999999997443 33345679999999999999985

...

>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.00  E-value=1.9e-09  Score=65.16  Aligned_cols=59  Identities=24%  Similarity=0.281  Sum_probs=45.7

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-C--CCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-P--DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p--~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +.+.|++|.++   ....|+++.++|+++|+++...+. .  .+..+++|+.|||||.|||..+-
T Consensus        57 ~~~~h~~f~v~---~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~  118 (120)
T cd07254          57 GGLNHLGVQVD---SAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL  118 (120)
T ss_pred             CCeeEEEEEeC---CHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence            35679999886   345689999999999999865321 1  13457899999999999998753

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>TIGR03645 glyox_marine lactoylglutathione lyase family protein

Probab=99.00  E-value=1.3e-09  Score=70.99  Aligned_cols=58  Identities=21%  Similarity=0.146  Sum_probs=44.6

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee-ee---CC-CCeeEEEEeCCCCCeEEEeeecCC
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SL---PD-GKVKQVFFFDPDGNGLEVASRRDE   68 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~---p~-~~~~QiF~~DPDGn~IEL~f~~~~   68 (68)
                      ..+.|++|.++      .++++.++|+++|+++... +.   +. .+.+.+|++|||||.|||..+..|
T Consensus        92 ~g~~Hla~~v~------dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~  154 (162)
T TIGR03645        92 TGVFHFCVQDP------DVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE  154 (162)
T ss_pred             ccceEEEEEcC------CHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence            34789999765      5899999999999876331 11   22 246899999999999999987654

Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.

>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain

Probab=99.00  E-value=2.4e-09  Score=63.67  Aligned_cols=60  Identities=27%  Similarity=0.289  Sum_probs=47.1

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeeecC
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      ..+.|++|.++   ....++++.++|+++|+++...+.. ..+.+.+|+.|||||.||+.+..+
T Consensus        56 ~~~~h~~~~v~---~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~  116 (117)
T cd07240          56 PGVDALGFEVA---SEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVEAD  116 (117)
T ss_pred             CCceeEEEEcC---CHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEccC
Confidence            45789999987   2335999999999999999665422 234588999999999999997643

This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa

>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC)

Probab=98.99  E-value=1.7e-09  Score=66.92  Aligned_cols=58  Identities=21%  Similarity=0.197  Sum_probs=44.6

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC----CCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP----DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p----~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ...|++|.++   +...++++.++|+++|+++.....+    .+..+++||.|||||.||+....
T Consensus        59 ~~~~iaf~v~---~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~  120 (124)
T cd08361          59 AEQASGFELR---DDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP  120 (124)
T ss_pred             ceEEEEEEEC---CHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence            4568999885   2456999999999999998654321    23356789999999999998653

This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins

Probab=98.99  E-value=1.9e-09  Score=69.07  Aligned_cols=58  Identities=28%  Similarity=0.401  Sum_probs=44.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +++.|++|.++   .+..+.++.++|+++|+++....  ...+..+.+||.|||||.|||.+.
T Consensus        58 ~~~~hiaf~v~---d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~  117 (144)
T cd07239          58 PSLNHVAFEMP---SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSE  117 (144)
T ss_pred             CceEEEEEECC---CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccC
Confidence            56789999997   35567888899999999986432  122334679999999999999864

2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio

>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.99  E-value=2.5e-09  Score=62.93  Aligned_cols=53  Identities=17%  Similarity=0.132  Sum_probs=44.1

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      +++.|++|.++      .++++.++|+++|+++.....+....+.+++.|||||.|||+
T Consensus        66 ~~~~~~~~~v~------di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~  118 (119)
T cd07263          66 GGTPGLVLATD------DIDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLV  118 (119)
T ss_pred             CCceEEEEEeh------HHHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEe
Confidence            56778999876      489999999999999976554444568999999999999996

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins

Probab=98.99  E-value=2.4e-09  Score=63.95  Aligned_cols=54  Identities=20%  Similarity=0.233  Sum_probs=43.4

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      .+.|++|.++..   +.++++.++|+++|+++...... .+.+.+||+|||||.|||.
T Consensus        73 ~~~hi~f~v~~~---~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~DP~G~~iE~~  126 (126)
T cd08346          73 QIHHIAFSVPSE---ASLDAWRERLRAAGVPVSGVVDH-FGERSIYFEDPDGLRLELT  126 (126)
T ss_pred             cEEEEEEEcCCH---HHHHHHHHHHHHcCCcccceEee-cceEEEEEECCCCCEEEeC
Confidence            367999999822   25899999999999998653322 5678899999999999984

The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>PLN03042 Lactoylglutathione lyase; Provisional

Probab=98.99  E-value=2.4e-09  Score=72.67  Aligned_cols=55  Identities=15%  Similarity=0.217  Sum_probs=45.2

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      -+.|++|.++      .++++.++|+++|+++...+....+.+..||+|||||.|||+...
T Consensus       121 G~~Hlaf~V~------Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~  175 (185)
T PLN03042        121 GFGHIGITVD------DVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK  175 (185)
T ss_pred             CccEEEEEcC------CHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence            4789999987      489999999999999975444443467789999999999998754

>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.98  E-value=2e-09  Score=64.40  Aligned_cols=56  Identities=20%  Similarity=0.140  Sum_probs=43.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      +...|++|.++   +.+.++++.++|+++|+++...+...+..+..+|.|||||.|||.
T Consensus        58 ~~~~~~~~~v~---~~~~~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~  113 (114)
T cd07261          58 GGGSELAFMVD---DGAAVDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVF  113 (114)
T ss_pred             CCceEEEEEcC---CHHHHHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEEEee
Confidence            34579999886   245689999999999999965433222226789999999999996

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins

Probab=98.97  E-value=2.8e-09  Score=63.95  Aligned_cols=59  Identities=22%  Similarity=0.273  Sum_probs=45.5

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC---CCeeEEEEeCCCCCeEEEeeecC
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD---GKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~---~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      ...|++|.++   ....++++.++|+++|+++...+.+.   .+.++++|.|||||.|||++...
T Consensus        58 ~~~~~~~~v~---~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~  119 (120)
T cd08362          58 RLDVVSFSVA---SRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADVE  119 (120)
T ss_pred             CCceEEEEeC---CHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEeccc
Confidence            3568999886   24568999999999999986543211   24578999999999999998653

2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge

>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase

Probab=98.97  E-value=2.1e-09  Score=74.88  Aligned_cols=56  Identities=21%  Similarity=0.287  Sum_probs=45.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEe
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      |.+.|+||.++   +...+.++.++|+++|+++...+.  +.+..+++||.|||||.|||.
T Consensus       206 g~~~Hiaf~v~---~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~  263 (303)
T TIGR03211       206 GKLHHVSFFLD---SWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF  263 (303)
T ss_pred             CceEEEEEEcC---CHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence            55889999998   355789999999999999864332  223457999999999999997

Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.

>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway

Probab=98.95  E-value=3.1e-09  Score=68.42  Aligned_cols=58  Identities=21%  Similarity=0.218  Sum_probs=42.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +.+.|+||.++   .++.+..+.++|+++|+++....  .+.+....+|++|||||.|||...
T Consensus        66 ~g~~Hiaf~v~---die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~  125 (153)
T cd07257          66 SGVHHAAFEVH---DFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTD  125 (153)
T ss_pred             CceeEEEEEcC---CHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcC
Confidence            46899999997   24444555699999999986432  122445678999999999999853

This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.

>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases

Probab=98.95  E-value=2.9e-09  Score=69.03  Aligned_cols=57  Identities=23%  Similarity=0.321  Sum_probs=42.8

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC----CCCeeEEEEeCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP----DGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p----~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      .++.|+||.++.   ...++++.++|+++|++.....-|    ..+.+++|+.|||||.|||..
T Consensus        62 ~~~~Hiaf~v~~---~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~  122 (161)
T cd07256          62 PRLHHVAFWVPE---PHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYT  122 (161)
T ss_pred             CceeEEEEEcCC---HHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEee
Confidence            357899999872   346899999999999974221112    134578999999999999974

This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of

>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.94  E-value=3e-09  Score=64.38  Aligned_cols=55  Identities=16%  Similarity=0.158  Sum_probs=43.2

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCC--CCeeEEEEeCCCCCeEEEe
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPD--GKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~--~~~~QiF~~DPDGn~IEL~   63 (68)
                      ...|++|.++..   ..++++.++|+++|+.+...+  .+.  .+.+++||.|||||.|||.
T Consensus        64 ~~~hi~f~v~~~---~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~  122 (123)
T cd07262          64 NGTHVAFAAPSR---EAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV  122 (123)
T ss_pred             CceEEEEECCCH---HHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence            356999999833   458899999999999985433  232  4567899999999999996

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase

Probab=98.92  E-value=6.3e-09  Score=63.01  Aligned_cols=56  Identities=18%  Similarity=0.069  Sum_probs=41.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +.+.|+||.++      ..+++.+.+++.|+++........+.+++||.|||||.|||....
T Consensus        56 ~~~~~~af~v~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~  111 (113)
T cd07267          56 ARFVGAAFEAA------SRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVYGQ  111 (113)
T ss_pred             CcccEEEEEEC------CHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEecc
Confidence            35779999888      246677778888887754322123457999999999999998753

This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.

>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains

Probab=98.92  E-value=8.9e-09  Score=61.42  Aligned_cols=54  Identities=13%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      +...|++|.++      .++++.++|+++|+++...+. ..+..++++++|||||.|||..
T Consensus        60 ~~~~~~~f~v~------di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~  114 (114)
T cd07247          60 PPGWLVYFAVD------DVDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ  114 (114)
T ss_pred             CCeEEEEEEeC------CHHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence            45567787766      488999999999999854332 2235589999999999999963

SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep

>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.90  E-value=9.1e-09  Score=61.50  Aligned_cols=53  Identities=15%  Similarity=0.136  Sum_probs=41.7

Q ss_pred             eeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeee
Q 036856            7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..|++|.++      .++++.++|+++|+.+...+.. ..+.+.+|+.|||||.|||..+
T Consensus        58 ~~~i~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~  111 (112)
T cd07238          58 VPDLSIEVD------DVDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH  111 (112)
T ss_pred             CCEEEEEeC------CHHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence            457777765      5889999999999998654332 2356789999999999999864

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.

>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1

Probab=98.90  E-value=6.4e-09  Score=63.91  Aligned_cols=58  Identities=28%  Similarity=0.322  Sum_probs=45.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +.+.|++|.++.   ...+++..++|+++|+++.....+ +..+.+|+.|||||.|||.+..
T Consensus        64 ~~~~h~~f~v~~---~~~v~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~DP~G~~ie~~~~~  121 (134)
T cd08348          64 AGLNHIAFEVDS---LDDLRDLYERLRAAGITPVWPVDH-GNAWSIYFRDPDGNRLELFVDT  121 (134)
T ss_pred             CCceEEEEEeCC---HHHHHHHHHHHHHCCCCccccCCC-CceeEEEEECCCCCEEEEEEcC
Confidence            357899999872   456788999999999998654322 3458899999999999999654

13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are

>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.90  E-value=6.5e-09  Score=61.78  Aligned_cols=52  Identities=25%  Similarity=0.374  Sum_probs=41.7

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEe
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      .+-|++|.++      .++++.++|+++|+.+..... +..+.+.+|+.||+||.|||.
T Consensus        72 g~~h~~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~  124 (125)
T cd08352          72 GLRHLAFSVE------DIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELY  124 (125)
T ss_pred             CceEEEEEeC------CHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEec
Confidence            4568999886      488899999999999865432 234567899999999999986

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp

Probab=98.90  E-value=5.7e-09  Score=68.21  Aligned_cols=58  Identities=16%  Similarity=0.281  Sum_probs=45.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC--CCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP--DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p--~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +.+.|+||.++   +.+.|+++.++|+++|+++...+..  ......+|+.|||||.|||...
T Consensus        68 ~~~~hiaf~v~---~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~  127 (166)
T cd09014          68 GRLHHLAYALD---TREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG  127 (166)
T ss_pred             CCceEEEEECC---CHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence            45789999997   3556899999999999998532222  1334569999999999999876

JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th

>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.87  E-value=1.2e-08  Score=60.86  Aligned_cols=54  Identities=13%  Similarity=-0.047  Sum_probs=42.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      ++..|++|.++      .++++.++|.++|+++..... ...+.++++++|||||.|||++
T Consensus        67 ~~~~~~~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~  121 (122)
T cd07246          67 GTPVSLHLYVE------DVDATFARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT  121 (122)
T ss_pred             CceEEEEEEeC------CHHHHHHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence            34567777665      588899999999999854332 3456789999999999999985

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.86  E-value=1.1e-08  Score=61.35  Aligned_cols=51  Identities=12%  Similarity=0.142  Sum_probs=40.4

Q ss_pred             eeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEee
Q 036856            8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      -|++|.++      .++++.++|+++|+++...+.. ..+.++++++|||||.|||..
T Consensus        68 ~~~~~~v~------did~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~  119 (119)
T cd08359          68 LILNFEVD------DVDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ  119 (119)
T ss_pred             EEEEEEEC------CHHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence            37888765      5999999999999998643322 235799999999999999963

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd07235 MRD Mitomycin C resistance protein (MRD)

Probab=98.85  E-value=9.6e-09  Score=62.07  Aligned_cols=53  Identities=17%  Similarity=0.106  Sum_probs=39.1

Q ss_pred             eeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEe
Q 036856            8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~   63 (68)
                      .|++|.+.   ....++++.++|+++|+++...+... .+.++++|+|||||.|||+
T Consensus        68 ~~l~~~~~---~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~  121 (122)
T cd07235          68 IALAFLCE---TPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF  121 (122)
T ss_pred             EEEEEEcC---CHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence            35666654   13459999999999999885432211 3458899999999999996

Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.

>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein

Probab=98.84  E-value=1.5e-08  Score=60.10  Aligned_cols=53  Identities=23%  Similarity=0.242  Sum_probs=41.8

Q ss_pred             eeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEE
Q 036856            7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEV   62 (68)
Q Consensus         7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL   62 (68)
                      +.|++|.++   ....|+++.++|++.|+++...+.  +.++....|++|||||.|||
T Consensus        74 ~~~i~~~~~---~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~  128 (128)
T PF00903_consen   74 GHHIAFLAF---DVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF  128 (128)
T ss_dssp             SEEEEEEES---SHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred             ceeEEEEec---cHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence            567888776   355689999999999999976543  44555556799999999997

; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....

>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]

Probab=98.84  E-value=1.2e-08  Score=69.46  Aligned_cols=54  Identities=28%  Similarity=0.465  Sum_probs=45.0

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCe-eEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKV-KQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~-~QiF~~DPDGn~IEL~f~~   66 (68)
                      --.|+.|.||      .+..++++|+++||++.+ ..+.+.+ .++|++||||+.||+....
T Consensus       115 GfgHIci~V~------di~sac~~lkekGV~f~K-k~~dGk~K~iaF~~dpDgywiei~~~s  169 (170)
T KOG2944|consen  115 GFGHICIEVD------DINSACERLKEKGVRFKK-KLKDGKMKPIAFLHDPDGYWIEIELES  169 (170)
T ss_pred             ccceEEEEeC------CHHHHHHHHHHhCceeee-cCCCccccceeEEECCCCCeEEEeecC
Confidence            3579999988      689999999999999544 4466766 8999999999999997643

>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase

Probab=98.84  E-value=1.1e-08  Score=70.65  Aligned_cols=56  Identities=16%  Similarity=0.082  Sum_probs=46.0

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .+.|++|.++   +.+.++++.++|+++|+++.....+.. .+.+||.|||||.|||...
T Consensus        60 ~~~hiaf~v~---~~~dl~~~~~~l~~~Gv~v~~~~~~~~-~~~~~~~DPdG~~iEl~~~  115 (294)
T TIGR02295        60 ALSYIGFRVS---KEEDLDKAADFFQKLGHPVRLVRDGGQ-PEALRVEDPFGYPIEFYFE  115 (294)
T ss_pred             CccEEEEEeC---CHHHHHHHHHHHHhcCCcEEeecCCCC-ceEEEEECCCCCEEEEEEc
Confidence            4679999987   245699999999999999976544443 4999999999999999864

The enzyme from Bacillus brevis contains manganese.

>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase

Probab=98.82  E-value=1.4e-08  Score=70.51  Aligned_cols=58  Identities=12%  Similarity=0.131  Sum_probs=45.9

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeee-eCCCCeeEEEEeCCCCCeEEEee
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS-LPDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~-~p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      .+++.|+||.++   ..+.+.+..++|+++|+.+.... .+.++.+++|++|||||.||+..
T Consensus       204 ~~~~~Hiaf~v~---d~~~v~~~~~~l~~~G~~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~  262 (286)
T TIGR03213       204 EKRLNHLMLEVD---TLDDVGLALDRVDADGIVASTLGRHTNDHMVSFYVATPSGWLVEYGW  262 (286)
T ss_pred             CCceEEEEEEcC---CHHHHHHHHHHHHHCCCEEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence            357889999987   46678899999999999443322 23356789999999999999975

Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.

>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins

Probab=98.82  E-value=1.2e-08  Score=62.07  Aligned_cols=46  Identities=20%  Similarity=0.193  Sum_probs=35.6

Q ss_pred             cccHHHHHHHHHHcCceEEe-----eeeC---CCCeeEEEEeCCCCCeEEEeee
Q 036856           20 LQFLSFGCFLLVEKGIQTFQ-----RSLP---DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus        20 l~~l~~~~~~L~~~GI~~~~-----~~~p---~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ...++++.++|+++|+.+..     ...|   ..+.+++||+|||||.|||...
T Consensus        66 v~dvd~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~  119 (120)
T cd08350          66 LPDVAALHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP  119 (120)
T ss_pred             eCCHHHHHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence            34699999999999998631     1112   1467999999999999999763

BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.

>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase

Probab=98.80  E-value=1.5e-08  Score=61.02  Aligned_cols=52  Identities=15%  Similarity=0.211  Sum_probs=41.1

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEee-ee-CCCCeeEEEE--eCCCCCeEEEe
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SL-PDGKVKQVFF--FDPDGNGLEVA   63 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~-p~~~~~QiF~--~DPDGn~IEL~   63 (68)
                      .+.|++|.++      .++++.++|+++|+++... +. +..+.+++|+  +|||||.||+.
T Consensus        72 g~~~i~~~v~------di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~  127 (128)
T TIGR03081        72 GIHHIAIEVD------DIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELE  127 (128)
T ss_pred             ceEEEEEEcC------CHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEec
Confidence            4679999876      4889999999999999542 22 2345678888  79999999986

Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.

>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.79  E-value=3.1e-08  Score=59.00  Aligned_cols=45  Identities=20%  Similarity=0.067  Sum_probs=36.3

Q ss_pred             cccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEee
Q 036856           20 LQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus        20 l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      .+.++++.++|++.|+++...... ..+.+.+|++|||||.||+.+
T Consensus        75 ~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~  120 (121)
T cd07251          75 EEEVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH  120 (121)
T ss_pred             HHHHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence            467999999999999999643321 234689999999999999976

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.76  E-value=5.6e-08  Score=58.82  Aligned_cols=54  Identities=11%  Similarity=-0.010  Sum_probs=41.7

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEeee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +-.|++|.++      .++++.++|+++|+.+....... -+.+..+++|||||.|+|..+
T Consensus        68 ~~~~~~~~v~------d~d~~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~~  122 (122)
T cd08355          68 GTQGVYVVVD------DVDAHYERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGTY  122 (122)
T ss_pred             ceEEEEEEEC------CHHHHHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEecC
Confidence            3457777775      47999999999999997544332 345788999999999999753

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm

Probab=98.76  E-value=2.5e-08  Score=58.67  Aligned_cols=50  Identities=18%  Similarity=0.068  Sum_probs=38.4

Q ss_pred             eeEEEecChhhccccHHHHHHHHHHcCce-EEe-eeeCCCCeeEEEEeCCCCCeEEEe
Q 036856            8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQ-TFQ-RSLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~-~~~-~~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      .|++|.++      .++++.++|+++|+. +.. ......+.+.+++.|||||.|||.
T Consensus        60 ~~~~~~~~------~~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~  111 (112)
T cd08349          60 GSVYIEVE------DVDALYAELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFG  111 (112)
T ss_pred             EEEEEEeC------CHHHHHHHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEec
Confidence            36777665      389999999999998 433 222234568999999999999986

BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large

>PLN02300 lactoylglutathione lyase

Probab=98.76  E-value=3.4e-08  Score=69.20  Aligned_cols=55  Identities=24%  Similarity=0.335  Sum_probs=45.0

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.|++|.++      .++++.++|+++|+++...+  .+.++.+++||.|||||.|||....
T Consensus        93 g~~hia~~v~------dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~  149 (286)
T PLN02300         93 GFGHFGIAVE------DVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRG  149 (286)
T ss_pred             CccEEEEEeC------CHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCC
Confidence            4679999886      48999999999999986543  3445567899999999999998764

>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase

Probab=98.75  E-value=4.3e-08  Score=68.31  Aligned_cols=59  Identities=22%  Similarity=0.176  Sum_probs=45.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..+.|++|.++   +...|+++.++|+++|+++...+.  ..+..+.+||.|||||.|||....
T Consensus        59 ~g~~hiaf~v~---~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~  119 (303)
T TIGR03211        59 AGLDHMAFKVE---SEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEK  119 (303)
T ss_pred             CceeEEEEEeC---CHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEcc
Confidence            34789999986   244589999999999999965332  112337899999999999999754

Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.

>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.75  E-value=5.2e-08  Score=58.61  Aligned_cols=51  Identities=18%  Similarity=0.078  Sum_probs=39.7

Q ss_pred             eeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      -|++|.++      .++++.++|+++|+++...  ..|+ +.+..+++|||||.|||.++
T Consensus        73 ~~~~~~v~------di~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~~~~~~~  125 (125)
T cd07264          73 FEIAFVTD------DVAAAFARAVEAGAVLVSEPKEKPW-GQTVAYVRDINGFLIELCSP  125 (125)
T ss_pred             EEEEEEcC------CHHHHHHHHHHcCCEeccCCccCCC-CcEEEEEECCCCCEEEEecC
Confidence            46777664      5899999999999988543  3344 45788999999999999763

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins

Probab=98.73  E-value=4.3e-08  Score=55.73  Aligned_cols=52  Identities=21%  Similarity=0.300  Sum_probs=43.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEE
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEV   62 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL   62 (68)
                      +...|++|.++      .++++.++|+++|+.+..... +..+.+.+++.||+||.|||
T Consensus        60 ~~~~~~~~~v~------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~  112 (112)
T cd06587          60 GGGVHLAFEVD------DVDAAYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL  112 (112)
T ss_pred             CCeeEEEEECC------CHHHHHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence            45679999987      358899999999999976553 45667999999999999986

This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas

>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.71  E-value=4.5e-08  Score=59.74  Aligned_cols=44  Identities=14%  Similarity=0.048  Sum_probs=33.5

Q ss_pred             cccHHHHHHHHHHcCceEEe------eeeCCCCeeEEEEeCCCCCeEEEe
Q 036856           20 LQFLSFGCFLLVEKGIQTFQ------RSLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus        20 l~~l~~~~~~L~~~GI~~~~------~~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      ..+++++.++|+++|+++..      ......+.++++|.|||||.|++.
T Consensus        63 v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~  112 (113)
T cd08356          63 VDDLEAYYEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIG  112 (113)
T ss_pred             ECCHHHHHHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEee
Confidence            34799999999999997531      111124569999999999999985

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase

Probab=98.71  E-value=4.2e-08  Score=67.82  Aligned_cols=58  Identities=16%  Similarity=0.256  Sum_probs=43.6

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCce--EEeee--eCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQ--TFQRS--LPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~--~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +.+.|+||.++   ....+.+..++|+++|++  +...+  ...+...++|++|||||.|||...
T Consensus       195 ~~~~Hiaf~v~---d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~  256 (294)
T TIGR02295       195 PRLHHIAYWVH---DPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG  256 (294)
T ss_pred             CceeeEEEEcC---CHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence            45789999997   245688899999999998  43221  122345789999999999999864

The enzyme from Bacillus brevis contains manganese.

>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase

Probab=98.67  E-value=7.5e-08  Score=66.86  Aligned_cols=57  Identities=23%  Similarity=0.229  Sum_probs=44.2

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee----CCCCeeEEEEeCCCCCeEEEeee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL----PDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~----p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .+.|++|.++   +...|+++.++|+++|+++...+.    ..+..+.+||.|||||.|||...
T Consensus        58 ~~~~~~f~V~---~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~  118 (286)
T TIGR03213        58 DLAYAGWEVA---DEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYG  118 (286)
T ss_pred             CeeeEeeeeC---CHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEc
Confidence            4678899887   234589999999999999965332    12345779999999999999864

Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.

>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE)

Probab=98.58  E-value=2.3e-07  Score=55.54  Aligned_cols=53  Identities=19%  Similarity=0.296  Sum_probs=41.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCC--CCeEEEe
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPD--GNGLEVA   63 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPD--Gn~IEL~   63 (68)
                      .+..|++|.++      .++++.++|+++|+++...+.  +.++.+.+|+.|||  ||.|||.
T Consensus        71 ~g~~h~~f~v~------d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~  127 (128)
T cd07249          71 EGLHHIAFEVD------DIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELV  127 (128)
T ss_pred             CceEEEEEEeC------CHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEec
Confidence            44689999887      388999999999999966443  44566666666666  9999986

MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.

>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.56  E-value=1.8e-07  Score=60.21  Aligned_cols=44  Identities=7%  Similarity=-0.021  Sum_probs=32.7

Q ss_pred             eeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856            8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      .|++|.++.       ..+.++|+++|+++...+.     ...|+.||||+.|||.
T Consensus        82 ~~~hlav~~-------~d~~~~l~~~Gv~~~~~~~-----~~~fi~DPDG~~ie~~  125 (127)
T cd08358          82 DFLGITIHS-------KQAVSNAKKHNWPVTEVED-----GVYEVKAPGGYKFYLI  125 (127)
T ss_pred             CEEEEEEEC-------HHHHHHHHHCCCceecCCC-----CEEEEECCCCCEEEEe
Confidence            366666651       1344999999999975221     2899999999999996

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>PLN02300 lactoylglutathione lyase

Probab=98.34  E-value=2.5e-06  Score=59.81  Aligned_cols=55  Identities=16%  Similarity=0.119  Sum_probs=44.8

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ....|++|.++      .+++++++++++|+.+...  ..|..+.+.++|.|||||.|+|...
T Consensus       222 ~~~~~i~~~v~------di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~  278 (286)
T PLN02300        222 NAYAQIAIGTD------DVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDN  278 (286)
T ss_pred             CceeEEEEecC------CHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEcc
Confidence            44568888886      5999999999999999664  4455556899999999999999854

>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]

Probab=98.20  E-value=2.7e-06  Score=61.39  Aligned_cols=56  Identities=25%  Similarity=0.335  Sum_probs=44.6

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEe-eeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ-RSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~-~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      -+=|+||-+|   .-..|...+.+|.++|+++.. .+..-  .--+|+.||+||.||+.-+.
T Consensus        71 GLyH~AfLlP---~r~~L~~~l~hl~~~~~~l~Ga~DH~v--SEAlYl~DPEGNGIEiYaDr  127 (265)
T COG2514          71 GLYHTAFLLP---TREDLARVLNHLAEEGIPLVGASDHLV--SEALYLEDPEGNGIEIYADR  127 (265)
T ss_pred             ceeeeeeecC---CHHHHHHHHHHHHhcCCcccccCcchh--heeeeecCCCCCeEEEEecC
Confidence            3669999999   345699999999999999973 23222  36699999999999998663

>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]

Probab=97.66  E-value=8.1e-05  Score=49.03  Aligned_cols=54  Identities=24%  Similarity=0.306  Sum_probs=42.1

Q ss_pred             eeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-----CCeeEEEEeCCCCCeEEEee
Q 036856            7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-----GKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-----~~~~QiF~~DPDGn~IEL~f   64 (68)
                      ++||..-.+    ++.--+.-++|.++||+|..++.-.     +..+-+|+.||.||-||+--
T Consensus        70 ~pHfGvVl~----~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~  128 (138)
T COG3565          70 PPHFGVVLP----VEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKG  128 (138)
T ss_pred             CccceEEEE----HHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeec
Confidence            567777777    4456667799999999997654422     56788999999999999863

>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]

Probab=97.40  E-value=9.9e-05  Score=42.52  Aligned_cols=53  Identities=25%  Similarity=0.335  Sum_probs=37.4

Q ss_pred             eeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856            7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      ..|.+|.++...   .....+...+..|..+..... .....++|++||||+.||+.
T Consensus        85 ~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~dp~g~~~e~~  137 (138)
T COG0346          85 LGHLAFEVDDEA---FGDAALAFLDPDGVRIELGEP-GRGGVHVYFRDPDGILIELA  137 (138)
T ss_pred             cCceeEeccccc---ccceEEEeeCCCCCEEEeecC-CCcceEEEEECCCCcEEEee
Confidence            567777777332   566677777888888855432 22222999999999999985

>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E

Probab=97.02  E-value=0.0022  Score=39.72  Aligned_cols=43  Identities=12%  Similarity=-0.163  Sum_probs=31.0

Q ss_pred             cccHHHHHHHHHHcCceEEee-eeCCCCeeEEEEeCCCCCeEEEe
Q 036856           20 LQFLSFGCFLLVEKGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus        20 l~~l~~~~~~L~~~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      .+.++++.++|++.|...... ..|++ .+...+.||+|+.|+|+
T Consensus        85 ~e~v~~~~~~l~~~g~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i~  128 (128)
T cd06588          85 EEEADRLFEALSEGGTVLMPLQKTFWS-PLFGWVTDRFGVSWQIN  128 (128)
T ss_pred             HHHHHHHHHHHhcCCeEeccchhcCcc-cccEEEECCCCCEEEeC
Confidence            445788889999999333332 22333 47899999999999984

coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to

>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site

Probab=96.99  E-value=0.0059  Score=36.05  Aligned_cols=45  Identities=22%  Similarity=0.155  Sum_probs=40.4

Q ss_pred             cHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856           22 FLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus        22 ~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..+++.+.|++.|..+.+......+.+.+...|+||+.+|+...+
T Consensus        30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~vD~   74 (83)
T PF13670_consen   30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYVDP   74 (83)
T ss_pred             CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEEcC
Confidence            388999999999999999888777779999999999999998765

This is family M4 in the peptidase classification.

>COG3607 Predicted lactoylglutathione lyase [General function prediction only]

Probab=96.61  E-value=0.0031  Score=41.72  Aligned_cols=49  Identities=22%  Similarity=0.095  Sum_probs=41.2

Q ss_pred             hhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856           17 AESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus        17 ~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +++-+..++++++-++.|-.....+++.+.+.-.-|.||||+.||+..-
T Consensus        79 ~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m  127 (133)
T COG3607          79 AGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWM  127 (133)
T ss_pred             cCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEe
Confidence            3456778999999999998887677777888889999999999999753

>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]

Probab=96.21  E-value=0.031  Score=36.52  Aligned_cols=55  Identities=15%  Similarity=0.110  Sum_probs=41.8

Q ss_pred             eeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCC-CeeEEEEeCCCCCeEEEeeec
Q 036856            8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDG-KVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~-~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ++..+-+.    ..+++++++|.++.|=.+.....+-+ .-+-..+.||+||.|-|.+..
T Consensus        71 ~~~~iy~~----v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~  126 (127)
T COG3324          71 GGWVIYFA----VDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA  126 (127)
T ss_pred             CCEEEEEe----cCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence            34444444    45799999999999999966554433 568899999999999998754

>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A

Probab=96.18  E-value=0.054  Score=32.51  Aligned_cols=53  Identities=15%  Similarity=0.222  Sum_probs=42.6

Q ss_pred             eEEEecChhhccccHHHHHHHHHH-cCceEEe-eeeCCCCeeEEEEeCCCC-CeEEEeeecC
Q 036856            9 FFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQ-RSLPDGKVKQVFFFDPDG-NGLEVASRRD   67 (68)
Q Consensus         9 ~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~-~~~p~~~~~QiF~~DPDG-n~IEL~f~~~   67 (68)
                      |++|-++      .|+++++.+.+ .|+.... ...+..+.+..|+..++| ..|||+.+..
T Consensus         2 Hv~i~V~------Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~   57 (109)
T PF13669_consen    2 HVGIVVP------DLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLD   57 (109)
T ss_dssp             EEEEEES-------HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESS
T ss_pred             EEEEEcC------CHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCC
Confidence            7788777      69999999998 8988744 445667788899999999 7899998754

>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A

Probab=96.13  E-value=0.017  Score=34.70  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=27.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEe-eeeCC
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ-RSLPD   44 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~-~~~p~   44 (68)
                      +.+.|++|.++      .+++++++|+++|+++.. ...+.
T Consensus        67 ~gi~Hia~~v~------D~d~~~~~l~~~G~~~~~~~~~~g  101 (109)
T PF13669_consen   67 GGIHHIAFEVD------DLDAAIARLEAQGFRVLDEGPRPG  101 (109)
T ss_dssp             SEEEEEEEEES------HHHHHHHHHHHTTECEEECEEEET
T ss_pred             CCEEEEEEEeC------CHHHHHHHHHHCCCEEcccCcccC
Confidence            56899999997      599999999999999854 34444

>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS)

Probab=94.05  E-value=0.082  Score=35.41  Aligned_cols=29  Identities=10%  Similarity=0.164  Sum_probs=25.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ   39 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~   39 (68)
                      ..++|+||.++      .+++++++|+++|+++..
T Consensus        82 ~Gv~HIAf~vd------DI~~~~~~L~~~Gv~~l~  110 (191)
T cd07250          82 AGVQHIALATD------DIFATVAALRARGVEFLP  110 (191)
T ss_pred             CceeEEEEECC------CHHHHHHHHHHcCCeecc
Confidence            46899999987      599999999999999854

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,

>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.35  E-value=0.71  Score=30.31  Aligned_cols=44  Identities=11%  Similarity=-0.086  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeecC
Q 036856           23 LSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus        23 l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      +++..++|.+.|+.+.-.  +++++ -+.--+.||.|+.|-|+....
T Consensus        88 ~da~f~~a~~aGa~v~mpl~~~fwG-~r~G~v~D~fGv~W~l~~~~~  133 (136)
T COG2764          88 VDAVFERAAAAGATVVMPLEDTFWG-DRYGQVTDPFGVVWMLNTPVE  133 (136)
T ss_pred             HHHHHHHHHhcCCeEEecchhcCcc-cceEEEECCCCCEEEEecCcc
Confidence            899999999999777543  33444 488889999999999997653

>PF14133 DUF4300: Domain of unknown function (DUF4300)

Probab=91.31  E-value=0.39  Score=34.52  Aligned_cols=40  Identities=28%  Similarity=0.226  Sum_probs=32.1

Q ss_pred             cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEE
Q 036856           20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEV   62 (68)
Q Consensus        20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL   62 (68)
                      -.|.+++.+.++++||.+.   -....+-.||++|||++.+=+
T Consensus       147 ~~h~~~i~k~wk~rgi~F~---~~k~slISV~~h~~d~~~lFv  186 (250)
T PF14133_consen  147 KVHAEKIQKYWKERGIKFN---NDKASLISVFLHDPDDNSLFV  186 (250)
T ss_pred             HHHHHHHHHHHHHcCceeC---CCceEEEEEEEEcCCCCeEEe
Confidence            4678889999999999992   123567889999999998753

>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase

Probab=90.14  E-value=0.34  Score=35.10  Aligned_cols=29  Identities=10%  Similarity=0.175  Sum_probs=25.4

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ   39 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~   39 (68)
                      ..++|+||.++      .+.+++++|+++|+++..
T Consensus       237 ~Gv~HiAf~vd------Di~~~~~~l~~~Gv~~l~  265 (353)
T TIGR01263       237 AGVQHIALNTD------DIVRTVRALRARGVEFLD  265 (353)
T ss_pred             CCccEEEEEcC------CHHHHHHHHHHcCCccCc
Confidence            46889999987      699999999999999865

This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=89.71  E-value=1.5  Score=25.75  Aligned_cols=49  Identities=14%  Similarity=0.094  Sum_probs=37.0

Q ss_pred             ecChhhccccHHHHHHHHHHcCceEEeeeeCCC---CeeEEEEeCCCCCeEE
Q 036856           13 GMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDG---KVKQVFFFDPDGNGLE   61 (68)
Q Consensus        13 ~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~---~~~QiF~~DPDGn~IE   61 (68)
                      .+...++.-=|.....-|.+.|+.+..-.+.-.   -.--+|+.|++|++|+
T Consensus         5 ev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~   56 (72)
T cd04895           5 KVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT   56 (72)
T ss_pred             EEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence            444556666688899999999999977666542   2556899999999874

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs)

Probab=89.35  E-value=1.3  Score=27.67  Aligned_cols=42  Identities=19%  Similarity=0.143  Sum_probs=32.2

Q ss_pred             ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856           19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL   60 (68)
Q Consensus        19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I   60 (68)
                      +-+.++++.+.|++.||++...++-...-|.|+|.=.+|..+
T Consensus        62 G~rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f~~~tG~v~  103 (114)
T PF03975_consen   62 GERNVEAARELLAEEGIPIVAEDVGGNFGRKVRFDPATGEVW  103 (114)
T ss_dssp             HHHHHHHHHHHHHHTT--EEEEEE-SSS-EEEEEETTTTEEE
T ss_pred             HHHHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEEEcCCCEEE
Confidence            356789999999999999999998888889999987777554

CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.

>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed

Probab=88.62  E-value=0.67  Score=35.04  Aligned_cols=47  Identities=15%  Similarity=-0.106  Sum_probs=32.5

Q ss_pred             hccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856           18 ESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus        18 ~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ++-+.+++.+++-.+.|-.-....++.+-  +-=|.||||+.||+.+..
T Consensus       309 ~Sre~VD~lv~~A~aaGG~~~~~~~D~Gf--~rsf~D~DGH~WEi~~~~  355 (357)
T PRK01037        309 ECEHDFVRFLRRWEMLGGELGEQADGHFP--LRLVFDLDGHIWVVSCVQ  355 (357)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCCCcccccC--cceeECCCCCEEEEEEEe
Confidence            34566788888877777644333333333  667899999999998764

>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]

Probab=87.25  E-value=0.6  Score=35.39  Aligned_cols=28  Identities=21%  Similarity=0.358  Sum_probs=25.0

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ   39 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~   39 (68)
                      .|||+||..+      .+-+++++|+++|+++-.
T Consensus       245 GIQHIA~~T~------dI~~tv~~lr~rG~~fl~  272 (363)
T COG3185         245 GIQHIAFGTD------DIYATVAALRERGVKFLP  272 (363)
T ss_pred             cceEEEeccc------HHHHHHHHHHHcCCccCC
Confidence            6999999977      688999999999999855

>PLN02875 4-hydroxyphenylpyruvate dioxygenase

Probab=86.18  E-value=0.81  Score=34.76  Aligned_cols=29  Identities=10%  Similarity=0.028  Sum_probs=25.3

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHc----CceEEe
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEK----GIQTFQ   39 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~----GI~~~~   39 (68)
                      .-|||+||.++      .+.+++++|+++    |+++-.
T Consensus       261 ~GIQHIAl~td------DI~~av~~Lra~~~~~Gv~fL~  293 (398)
T PLN02875        261 PGLQHLALKSD------DIFGTLREMRARSHIGGFEFMP  293 (398)
T ss_pred             CCeeEEEeecC------CHHHHHHHHHhccccCCeecCC
Confidence            46999999988      689999999998    999855

>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional

Probab=86.15  E-value=2.1  Score=28.92  Aligned_cols=41  Identities=20%  Similarity=0.322  Sum_probs=35.5

Q ss_pred             ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856           19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG   59 (68)
Q Consensus        19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~   59 (68)
                      +-+..+++.+.|++.||++...++-...-|.++|.--+|..
T Consensus       112 G~rNv~~a~~~L~~~gI~i~a~DvGG~~gR~i~f~~~tG~v  152 (163)
T PRK13494        112 GLENSEFAVNTLNKYGIPILAKDFDQSKSRKIFVFPENFKV  152 (163)
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence            46789999999999999999999888778999988777754

>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS)

Probab=85.65  E-value=6  Score=26.35  Aligned_cols=57  Identities=9%  Similarity=0.087  Sum_probs=42.3

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHH-cCceEEee-eeC--CCCeeEEEEeCCCC-CeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQR-SLP--DGKVKQVFFFDPDG-NGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~-~~p--~~~~~QiF~~DPDG-n~IEL~f~~   66 (68)
                      .|-|+++-|+    ...++.+++..++ .|.+.... ..+  .++.+...+..|+| ..|+|+.+.
T Consensus         3 ~iDHv~i~V~----~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~   64 (191)
T cd07250           3 RIDHVVGNVP----DGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPA   64 (191)
T ss_pred             eeeEEEeecC----hhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCC
Confidence            5789999998    6679999999866 79987443 333  35678888888865 568888643

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,

>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional

Probab=85.11  E-value=2.6  Score=28.30  Aligned_cols=41  Identities=17%  Similarity=0.054  Sum_probs=34.6

Q ss_pred             ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856           19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG   59 (68)
Q Consensus        19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~   59 (68)
                      +-+..+++.+.|++.||++...++-...-|.++|.--+|..
T Consensus       110 G~rNv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v  150 (162)
T PRK13490        110 GNRNGKAVKKKLKELSIPILAEDIGGNKGRTMIFDTSDGKV  150 (162)
T ss_pred             hHHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence            36789999999999999999989888777899887666654

>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional

Probab=84.24  E-value=2.9  Score=28.02  Aligned_cols=42  Identities=12%  Similarity=0.054  Sum_probs=35.4

Q ss_pred             ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856           19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL   60 (68)
Q Consensus        19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I   60 (68)
                      +-+..+++.+.|++.||++...++-...-|.++|.--+|..+
T Consensus       103 G~rNi~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v~  144 (159)
T PRK13495        103 GARNVEAVKKHLKDFGIKLVAEDTGGNRARSIEYNIETGKLL  144 (159)
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence            467899999999999999999888887778998877777543

>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional

Probab=83.50  E-value=3.3  Score=27.96  Aligned_cols=41  Identities=15%  Similarity=0.101  Sum_probs=34.7

Q ss_pred             ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856           19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG   59 (68)
Q Consensus        19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~   59 (68)
                      +-+..+++.+.|++.||++...++-...-|.|+|.--+|..
T Consensus       113 G~rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f~~~tG~v  153 (167)
T PRK13498        113 ADKNIHAALALAEQNGLHLKAQDLGSTGHRSIIFDLWNGNV  153 (167)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence            47789999999999999999988888777888887666654

>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=83.09  E-value=8  Score=23.37  Aligned_cols=54  Identities=19%  Similarity=0.266  Sum_probs=37.5

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEee-eeC-----------CCCeeEEEEeCCCC-CeEEEeee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SLP-----------DGKVKQVFFFDPDG-NGLEVASR   65 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~p-----------~~~~~QiF~~DPDG-n~IEL~f~   65 (68)
                      .+.|+++-++      .++++++...+.|...... ..+           ..+.+.+++..|+| ..|||...
T Consensus         3 ~i~Hi~i~v~------Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~   69 (142)
T cd08353           3 RMDNVGIVVR------DLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKF   69 (142)
T ss_pred             eeeeEEEEeC------CHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEe
Confidence            4678888877      5889999988888876432 111           12356678887776 47898764

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>PRK14707 hypothetical protein; Provisional

Probab=82.52  E-value=4  Score=37.56  Aligned_cols=57  Identities=14%  Similarity=0.044  Sum_probs=43.7

Q ss_pred             EEEecChhhccccHHHHHHHHHHcCceEEeeeeCCC------CeeEEEEeCCCCCeEEEeeec
Q 036856           10 FSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDG------KVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus        10 ~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~------~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      |++..|..+=......++..|.++|+.......-+.      +--.+-+.||+|..+|++|.-
T Consensus      2345 YTVVLpp~~Fva~~r~Il~aL~~qGy~~vkvkN~F~~~~~~YkGINvtL~~pdG~~FEIQFHT 2407 (2710)
T PRK14707       2345 YSVVLEPQGFTAGLRAVLAALDDQGHARVKLTNQFTEYSPSFKAINLTLRSPEGALWEIQFHT 2407 (2710)
T ss_pred             EEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeecccCCCCCccceEEEEEcCCCcEEEEEecc
Confidence            678888777788889999999999999866443321      122345699999999999864

>TIGR03645 glyox_marine lactoylglutathione lyase family protein

Probab=82.42  E-value=10  Score=24.22  Aligned_cols=56  Identities=14%  Similarity=0.080  Sum_probs=39.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHH-cCceEEee---e----------------eCCCCeeEEEEeCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQR---S----------------LPDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~---~----------------~p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      -.|.|+++.++      .|+.+++..++ .|.++...   .                .++.+.+..|+..++|..|||..
T Consensus         3 ~~i~Hv~i~V~------Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~   76 (162)
T TIGR03645         3 RTFSHIGISVP------DLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFE   76 (162)
T ss_pred             ceEEEEEEEeC------CHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEe
Confidence            46889998877      68899988877 68766311   0                11233667788888899999986


Q ss_pred             ec
Q 036856           65 RR   66 (68)
Q Consensus        65 ~~   66 (68)
                      ..
T Consensus        77 ~~   78 (162)
T TIGR03645        77 FK   78 (162)
T ss_pred             cc
Confidence            54

Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.

>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional

Probab=82.16  E-value=4.1  Score=28.02  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=36.3

Q ss_pred             ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856           19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL   60 (68)
Q Consensus        19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I   60 (68)
                      |-++.+++.+.|++.||++...++-...-|.++|.--+|..+
T Consensus       110 G~rNi~~a~~~L~~~gI~i~a~DvGG~~gR~v~f~~~tG~v~  151 (184)
T PRK13497        110 GEQNAAFAMQFLRDEGIPVVGSSTGGEHGRKLEYWPVSGRAR  151 (184)
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCeEE
Confidence            467899999999999999999998887779999988888764

>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional

Probab=81.94  E-value=4.2  Score=27.13  Aligned_cols=41  Identities=15%  Similarity=0.020  Sum_probs=34.6

Q ss_pred             ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856           19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG   59 (68)
Q Consensus        19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~   59 (68)
                      +-+..+++.+.|++.||++...++-...-|.++|.--+|..
T Consensus       105 G~rNi~~a~~~L~~~gi~i~a~dvGG~~gR~i~f~~~tG~v  145 (157)
T PRK13488        105 GERNIESAKETLKKLGIRIVAEDVGGDYGRTVKFDLKTGKV  145 (157)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEEEcCCCCCcEEEEECCCCEE
Confidence            35789999999999999999988887777888887777754

>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional

Probab=81.75  E-value=4.1  Score=28.36  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=35.1

Q ss_pred             ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856           19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG   59 (68)
Q Consensus        19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~   59 (68)
                      |-+.++++.+.|++.||++...++-...-|.|.|.--+|..
T Consensus       125 G~rNi~~a~~~L~~~gI~iva~DvGG~~gR~v~f~~~tG~v  165 (201)
T PRK13487        125 GERNAEFVRDYLQTERIPIVAEDLLDIYPRKVYFFPTTGKV  165 (201)
T ss_pred             hHHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence            47789999999999999999999888777999887766654

>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional

Probab=81.31  E-value=4.3  Score=28.40  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=36.1

Q ss_pred             hccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856           18 ESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL   60 (68)
Q Consensus        18 ~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I   60 (68)
                      =|-+..+++.+.|++.||++...++-...-|.|.|.--+|..+
T Consensus       112 IG~rNie~a~~~L~~~GI~ivaeDvGG~~gRkI~f~~~tG~v~  154 (199)
T PRK13491        112 IGQANAAFARRYLRDEGIRCTAHSLGGNRARRIRFWPKTGRVQ  154 (199)
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence            3567899999999999999999888887778898877777654

>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=80.50  E-value=8.3  Score=21.81  Aligned_cols=43  Identities=12%  Similarity=0.043  Sum_probs=28.5

Q ss_pred             ccHHHHHHHHHH-cCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856           21 QFLSFGCFLLVE-KGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus        21 ~~l~~~~~~L~~-~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      ..++++.+..++ .|..+.....+..+...+++.+|++..++|.
T Consensus         7 ~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   50 (119)
T cd07263           7 DDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLV   50 (119)
T ss_pred             CCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEE
Confidence            368888988887 7998865543334456677777765334443

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional

Probab=80.15  E-value=4.8  Score=28.29  Aligned_cols=41  Identities=10%  Similarity=0.160  Sum_probs=34.4

Q ss_pred             ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856           19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG   59 (68)
Q Consensus        19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~   59 (68)
                      |-++.+++.+.|++.||++...++-...-|.|+|.--+|..
T Consensus       137 G~rNi~~a~~~L~~~gI~Iva~DvGG~~gRki~f~~~tG~v  177 (213)
T PRK13493        137 GEKNVEFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQA  177 (213)
T ss_pred             hHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence            46788999999999999999999888777889887666643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	68
1nki_A	135	Probable fosfomycin resistance protein; potassium	8e-06
2qqz_A	126	Glyoxalase family protein, putative; alpha-beta st	2e-05
3zw5_A	147	Glyoxalase domain-containing protein 5; lyase; 1.6	2e-05
1npb_A	141	Fosfomycin-resistance protein; manganese binding,	3e-05
3r4q_A	160	Lactoylglutathione lyase; structural genomics, PSI	5e-05
3uh9_A	145	Metallothiol transferase FOSB 2; structural genomi	6e-05
3huh_A	152	Virulence protein STM3117; structural genomics, ny	8e-05
2rk0_A	136	Glyoxalase/bleomycin resistance protein/dioxygena;	9e-05
3ey7_A	133	Biphenyl-2,3-DIOL 1,2-dioxygenase III-related prot	2e-04
3ghj_A	141	Putative integron gene cassette protein; integron	5e-04
3kol_A	156	Oxidoreductase, glyoxalase/bleomycin resistance pr	5e-04
2p7o_A	133	Glyoxalase family protein; fosfomycin resistance p	6e-04

>1nki_A Probable fosfomycin resistance protein; potassium binding loop, manganese binding, transferase; 0.95A {Pseudomonas aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A 1nnr_A Length = 135

 Score = 39.4 bits (92), Expect = 8e-06
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 3   EAGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEV 62
            A     ++FG++ A+  +F +     L   G++ +++     +    +F DPDG+ LE 
Sbjct: 58  PAADYTHYAFGIAAADFARFAAQ----LRAHGVREWKQ--NRSEGDSFYFLDPDGHRLEA 111

Query: 63  AS 64
             
Sbjct: 112 HV 113

>2qqz_A Glyoxalase family protein, putative; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 1.92A {Bacillus anthracis str} Length = 126

 Score = 38.3 bits (89), Expect = 2e-05
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 30  LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRD 67
           L+++GI           V + +  DP GN +E    ++
Sbjct: 90  LIKQGI-EVIDDHARPDVIRFYVSDPFGNRIEFMENKN 126

>3zw5_A Glyoxalase domain-containing protein 5; lyase; 1.60A {Homo sapiens} Length = 147

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 30  LVEKGIQTF----QRSLPDGKVKQVFFFDPDGNGLEVAS 64
           L    +        R+   G +  ++F DPD N +EV++
Sbjct: 108 LKACDVPIEEGPVPRTGAKGPIMSIYFRDPDRNLIEVSN 146

>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding loop, transferase; 2.50A {Serratia marcescens} SCOP: d.32.1.2 Length = 141

 Score = 38.2 bits (89), Expect = 3e-05
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 3   EAGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEV 62
           +      ++F ++E +           L + G+  +++     +    +F DPDG+ LE+
Sbjct: 61  QESDYTHYAFTVAEEDFEPLSQR----LEQAGVTIWKQ--NKSEGASFYFLDPDGHKLEL 114

Query: 63  AS 64
             
Sbjct: 115 HV 116

>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.51A {Agrobacterium tumefaciens} Length = 160

 Score = 37.5 bits (87), Expect = 5e-05
 Identities = 8/36 (22%), Positives = 10/36 (27%)

Query: 30  LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65
                I              V+  DP GN +EV   
Sbjct: 97  FEALEIPVEHYHRWPNGSYSVYIRDPAGNSVEVGEG 132

>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygenase, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A Length = 152

 Score = 36.9 bits (85), Expect = 8e-05
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 45  GKVKQVFFFDPDGNGLEVASRRD 67
           G++  ++  DPDGN +E++   +
Sbjct: 123 GEIMSIYIRDPDGNLIEISQYVE 145

>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z, glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP} Length = 136

 Score = 36.6 bits (85), Expect = 9e-05
 Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)

Query: 30  LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRD 67
           L + G   F  +        + F D D   LE    R+
Sbjct: 93  LAKAGAA-FTPTQELPFGWILAFRDADNIALEAMLGRE 129

>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A* Length = 133

 Score = 36.1 bits (83), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 39  QRSLPDGKVKQVFFFDPDGNGLEVASRRD 67
           +R+   G +   +F DPDGN +EV++  +
Sbjct: 104 KRTGAQGAITSFYFRDPDGNLIEVSTYSN 132

>3ghj_A Putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.47A {Uncultured bacterium} Length = 141

 Score = 34.6 bits (80), Expect = 5e-04
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 30  LVEKGIQTFQRS-LPDGKVKQVFFFDPDGNGLEVAS 64
           L  KG+           +   ++F DP+G+ LE  +
Sbjct: 105 LESKGVSVHGPVNQEWMQAVSLYFADPNGHALEFTA 140

>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102} Length = 156

 Score = 34.8 bits (80), Expect = 5e-04
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 30  LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRD 67
           + E  I      +     + V+F+DPDG  +E+    +
Sbjct: 116 IGENKIAIAHGPVTRPTGRGVYFYDPDGFMIEIRCDPE 153

>2p7o_A Glyoxalase family protein; fosfomycin resistance protein, Mn binding, antibiotic resist metal binding protein, hydrolase; 1.44A {Listeria monocytogenes} PDB: 2p7k_A 2p7l_A 2p7m_A 2p7p_A 2p7q_A Length = 133

 Score = 34.4 bits (79), Expect = 6e-04
 Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 6   SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ-RSLPDGKVKQVFFFDPDGNGLEVAS 64
           +    +F +   E  ++       +   G++    R    G+ + ++F+D D +  E+ +
Sbjct: 66  TYNHIAFQIQSEEVDEYTER----IKALGVEMKPERPRVQGEGRSIYFYDFDNHLFELHA 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
3kol_A	156	Oxidoreductase, glyoxalase/bleomycin resistance pr	99.36
4g6x_A	155	Glyoxalase/bleomycin resistance protein/dioxygena;	99.3
3rri_A	135	Glyoxalase/bleomycin resistance protein/dioxygena;	99.29
4gym_A	149	Glyoxalase/bleomycin resistance protein/dioxygena;	99.28
3hdp_A	133	Glyoxalase-I; glutathione,lyase, methylglyoxal,110	99.24
3ghj_A	141	Putative integron gene cassette protein; integron	99.22
3e5d_A	127	Putative glyoxalase I; structural genomics, joint	99.22
2qqz_A	126	Glyoxalase family protein, putative; alpha-beta st	99.2
3l7t_A	134	SMU.1112C, putative uncharacterized protein; metal	99.19
2p25_A	126	Glyoxalase family protein; structural genomics, MC	99.16
2p7o_A	133	Glyoxalase family protein; fosfomycin resistance p	99.16
2rk0_A	136	Glyoxalase/bleomycin resistance protein/dioxygena;	99.15
1f9z_A	135	Glyoxalase I; beta-alpha-beta-BETA-beta motif, pro	99.14
3ey7_A	133	Biphenyl-2,3-DIOL 1,2-dioxygenase III-related prot	99.12
1npb_A	141	Fosfomycin-resistance protein; manganese binding,	99.12
2a4x_A	138	Mitomycin-binding protein; ALFA/beta protein, mito	99.12
3sk2_A	132	EHPR; antibiotic resistance, griseoluteate-binding	99.12
3bqx_A	150	Glyoxalase-related enzyme; VOC superfamily, PSI-2,	99.12
3uh9_A	145	Metallothiol transferase FOSB 2; structural genomi	99.12
1r9c_A	139	Glutathione transferase; fosfomycin resistance pro	99.1
3r4q_A	160	Lactoylglutathione lyase; structural genomics, PSI	99.09
1nki_A	135	Probable fosfomycin resistance protein; potassium	99.09
2rbb_A	141	Glyoxalase/bleomycin resistance protein/dioxygena;	99.09
1xqa_A	113	Glyoxalase/bleomycin resistance protein; dioxygena	99.09
3huh_A	152	Virulence protein STM3117; structural genomics, ny	99.08
1ss4_A	153	Glyoxalase family protein; structural genomics, PS	99.08
3rmu_A	134	Methylmalonyl-COA epimerase, mitochondrial; struct	99.07
3vw9_A	187	Lactoylglutathione lyase; glyoxalase, lyase-lyase	99.07
1ecs_A	126	Bleomycin resistance protein; arm-exchange, antibi	99.06
3r6a_A	144	Uncharacterized protein; PSI biology, structural g	99.06
3oaj_A	335	Putative ring-cleaving dioxygenase MHQO; structura	99.06
3hpy_A	309	Catechol 2,3-dioxygenase; repeated motifs, aromati	99.06
2pjs_A	119	AGR_C_3564P, uncharacterized protein ATU1953; glyo	99.05
4hc5_A	133	Glyoxalase/bleomycin resistance protein/dioxygena;	99.05
2za0_A	184	Glyoxalase I; lyase, lactoylglutathione lyase, met	99.04
1mpy_A	307	Catechol 2,3-dioxygenase; extradiol dioxygenase, n	99.03
3rhe_A	148	NAD-dependent benzaldehyde dehydrogenase; structur	99.02
2kjz_A	144	ATC0852; protein of unknown function, dimer, struc	99.02
3gm5_A	159	Lactoylglutathione lyase and related lyases; sheet	99.02
1twu_A	139	Hypothetical protein YYCE; structural genomics, pr	99.01
3ct8_A	146	Protein BH2160, putative glyoxalase; NP_243026.1,	99.01
3itw_A	137	Protein TIOX; bleomycin resistance fold, bisinterc	99.0
2i7r_A	118	Conserved domain protein; structural genomics cons	98.99
2c21_A	144	Trypanothione-dependent glyoxalase I; lyase, gluta	98.98
3g12_A	128	Putative lactoylglutathione lyase; glyoxalase, ble	98.97
2r6u_A	148	Uncharacterized protein; structural genomics, PSI-	98.97
2wl9_A	305	Catechol 2,3-dioxygenase; aromatic hydrocarbons ca	98.96
2rk9_A	145	Glyoxalase/bleomycin resistance protein/dioxygena;	98.95
3oaj_A	335	Putative ring-cleaving dioxygenase MHQO; structura	98.95
2zyq_A	300	Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; e	98.95
3zw5_A	147	Glyoxalase domain-containing protein 5; lyase; 1.6	98.95
1zsw_A	338	Metallo protein, glyoxalase family protein; hypoth	98.95
3hpy_A	309	Catechol 2,3-dioxygenase; repeated motifs, aromati	98.94
2qnt_A	141	AGR_C_3434P, uncharacterized protein ATU1872; glyo	98.94
3oa4_A	161	Glyoxalase, BH1468 protein; structural genomics, p	98.93
3lm4_A	339	Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein	98.93
3fcd_A	134	Lyase, ORF125EGC139; lactoylglutathione lyase, YEC	98.92
2ehz_A	302	1,2-dihydroxynaphthalene dioxygenase; extradiol di	98.92
1jc4_A	148	Methylmalonyl-COA epimerase; vicinal oxygen chelat	98.9
3zi1_A	330	Glyoxalase domain-containing protein 4; isomerase;	98.9
3m2o_A	164	Glyoxalase/bleomycin resistance protein; unknown f	98.89
1zsw_A	338	Metallo protein, glyoxalase family protein; hypoth	98.88
3bt3_A	148	Glyoxalase-related enzyme, ARAC type; VOC superfam	98.86
1kw3_B	292	2,3-dihydroxybiphenyl dioxygenase; four TIME repet	98.86
1qto_A	122	Bleomycin-binding protein; arm-exchange, antibioti	98.85
1xrk_A	124	Bleomycin resistance protein; arm exchange, ligand	98.84
1lgt_A	297	Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxy	98.81
3lm4_A	339	Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein	98.77
1f1u_A	323	Homoprotocatechuate 2,3-dioxygenase; extradiol, ma	98.77
3b59_A	310	Glyoxalase/bleomycin resistance protein/dioxygena;	98.75
1kw3_B	292	2,3-dihydroxybiphenyl dioxygenase; four TIME repet	98.74
2ehz_A	302	1,2-dihydroxynaphthalene dioxygenase; extradiol di	98.72
2zyq_A	300	Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; e	98.7
1lgt_A	297	Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxy	98.69
3pkv_A	252	Toxoflavin lyase (TFLA); metalloenzyme, vicinal ox	98.69
2wl9_A	305	Catechol 2,3-dioxygenase; aromatic hydrocarbons ca	98.69
1mpy_A	307	Catechol 2,3-dioxygenase; extradiol dioxygenase, n	98.66
2zw5_A	301	Bleomycin acetyltransferase; dimer, two domains; H	98.66
4ghg_A	365	Homoprotocatechuate 2,3-dioxygenase; oxygen activa	98.57
3oxh_A	282	RV0577 protein; kinase regulation, antibiotic resi	98.57
4ghg_A	365	Homoprotocatechuate 2,3-dioxygenase; oxygen activa	98.54
3b59_A	310	Glyoxalase/bleomycin resistance protein/dioxygena;	98.5
1f1u_A	323	Homoprotocatechuate 2,3-dioxygenase; extradiol, ma	98.49
3oxh_A	282	RV0577 protein; kinase regulation, antibiotic resi	98.33
3zi1_A	330	Glyoxalase domain-containing protein 4; isomerase;	98.27
1xy7_A	166	Unknown protein; structural genomics, protein stru	98.23
2r5v_A	357	PCZA361.1; dioxygenase, non-heme iron, vancomycin,	98.02
1u7i_A	136	Hypothetical protein; structural genomics, PA1358,	98.0
1u6l_A	149	Hypothetical protein; structural genomics, PSI, pr	97.84
1t47_A	381	4-hydroxyphenylpyruvate dioxygenase; triketone inh	97.73
2r5v_A	357	PCZA361.1; dioxygenase, non-heme iron, vancomycin,	97.58
3l20_A	172	Putative uncharacterized protein; hypothetical pro	97.43
1tsj_A	139	Conserved hypothetical protein; structural genomic	97.32
3opy_B	941	6-phosphofructo-1-kinase beta-subunit; ATP binding	96.93
1t47_A	381	4-hydroxyphenylpyruvate dioxygenase; triketone inh	96.88
1sqd_A	424	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	96.82
3oms_A	138	PHNB protein; structural genomics, PSI-2, protein	96.71
1cjx_A	357	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	96.5
1cjx_A	357	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	96.5
3e0r_A	244	C3-degrading proteinase (CPPA protein); MCSG, PSI,	96.48
1sp8_A	418	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	95.69
3isq_A	393	4-hydroxyphenylpyruvate dioxygenase; tyrosine meta	93.4
3isq_A	393	4-hydroxyphenylpyruvate dioxygenase; tyrosine meta	91.45
3hdp_A	133	Glyoxalase-I; glutathione,lyase, methylglyoxal,110	90.73
1ss4_A	153	Glyoxalase family protein; structural genomics, PS	90.27
3rmu_A	134	Methylmalonyl-COA epimerase, mitochondrial; struct	88.89
3oa4_A	161	Glyoxalase, BH1468 protein; structural genomics, p	88.85
1jc4_A	148	Methylmalonyl-COA epimerase; vicinal oxygen chelat	88.01
2guk_A	120	Hypothetical protein PG1857; alpha-beta, alpha-hel	86.5
3e5d_A	127	Putative glyoxalase I; structural genomics, joint	84.49
1sp8_A	418	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	83.95
1sqd_A	424	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	83.34
3l7t_A	134	SMU.1112C, putative uncharacterized protein; metal	81.54
2p25_A	126	Glyoxalase family protein; structural genomics, MC	80.66
3e0r_A	244	C3-degrading proteinase (CPPA protein); MCSG, PSI,	80.19

>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}

Probab=99.36  E-value=4.8e-12  Score=76.64  Aligned_cols=59  Identities=19%  Similarity=0.349  Sum_probs=48.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeecC
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      +.+.|++|.++    ...++++.++|+++|+++...+......+++||.|||||.|||.....
T Consensus        95 ~~~~h~~~~v~----~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdG~~iel~~~~~  153 (156)
T 3kol_A           95 TRAYHLAFDID----PQLFDRAVTVIGENKIAIAHGPVTRPTGRGVYFYDPDGFMIEIRCDPE  153 (156)
T ss_dssp             SSCCEEEEECC----GGGHHHHHHHHHHTTCCEEEEEEEC-CCEEEEEECTTSCEEEEEECCC
T ss_pred             CceEEEEEEec----HHHHHHHHHHHHHCCCccccCceecCCccEEEEECCCCCEEEEEecCC
Confidence            46789999998    456999999999999999654444333369999999999999998754

>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}

Probab=99.30  E-value=7.2e-12  Score=78.03  Aligned_cols=56  Identities=18%  Similarity=0.121  Sum_probs=44.6

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeecC
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      .+.|++|.++      .++++.++|+++|+++...+......+.+||+|||||.|||.+..+
T Consensus        98 g~~~l~f~Vd------Dvda~~~~l~~~Gv~~~~~p~~~~~g~~~~f~DPdGn~iel~q~~~  153 (155)
T 4g6x_A           98 GIPAASFAVD------DIAAEYERLSALGVRFTQEPTDMGPVVTAILDDTCGNLIQLMQIAY  153 (155)
T ss_dssp             TCCSEEEEES------CHHHHHHHHHHTTCCEEEEEEECSSCEEEEEECSSSCEEEEEEC--
T ss_pred             CceEEEeeec------hhhhhhhHHhcCCcEEeeCCEEcCCeEEEEEECCCCCEEEEEEECC
Confidence            4568888876      5899999999999999665544444488999999999999997643

>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}

Probab=99.29  E-value=2.2e-11  Score=73.07  Aligned_cols=59  Identities=19%  Similarity=0.212  Sum_probs=47.1

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-----CCCeeEEEEeCCCCCeEEEeeecC
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-----DGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-----~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      ...|++|.++.   ...++++.++|+++|+++...+..     .++.+.+||+|||||.|||..+.+
T Consensus        67 ~~~h~~~~~~~---~~d~~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~~~~DPdGn~iel~~~~~  130 (135)
T 3rri_A           67 YPRHFGITFRD---KKHFDNLYKLAKQRGIPFYHDLSRRFEGLIEEHETFFLIDPSNNLLEFKYYFD  130 (135)
T ss_dssp             SSCEEEEECSS---HHHHHHHHHHHHHTTCCEEEEEEEESTTSTTCEEEEEEECTTCCEEEEEEESS
T ss_pred             CCCeEEEEEcC---hHhHHHHHHHHHHcCCceecCcccccCCCCCceEEEEEECCCCCEEEEEEECC
Confidence            46899999883   156999999999999998543332     245688999999999999998754

>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}

Probab=99.28  E-value=1.3e-11  Score=75.85  Aligned_cols=58  Identities=14%  Similarity=-0.008  Sum_probs=47.3

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ...|++|.++.   ...++++.+++++.|+.+...+...+..+++||+|||||.|||.+..
T Consensus        77 ~~~~~a~~v~~---~~~vd~~~~~~~~~g~~~~~~p~~~~~~~~~~f~DPDGn~iEi~~~~  134 (149)
T 4gym_A           77 TEAIVCVSAID---RDDVDRFADTALGAGGTVARDPMDYGFMYGRSFHDLDGHLWEVMWMS  134 (149)
T ss_dssp             BSCEEEEECSS---HHHHHHHHHHHHHTTCEECSCCEECSSEEEEEEECTTCCEEEEEEEC
T ss_pred             CeeEEEEEecc---HHHHHHHHHHHHhcCceeeccccccCCEEEEEEEcCCCCEEEEEEEC
Confidence            34599999972   34689999999999999966555556679999999999999998753

>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A

Probab=99.24  E-value=2.3e-11  Score=72.66  Aligned_cols=54  Identities=13%  Similarity=0.142  Sum_probs=44.7

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC---CCCeeEEEEeCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP---DGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p---~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      +.+.|++|.++      .++++.++|+++|+++...+.|   ..+.+.+|++|||||.|||..
T Consensus        76 ~g~~hiaf~v~------di~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~dPdG~~iEl~e  132 (133)
T 3hdp_A           76 STPYHICYEVE------DIQKSIEEMSQIGYTLFKKAEIAPAIDNRKVAFLFSTDIGLIELLE  132 (133)
T ss_dssp             CEEEEEEEEES------CHHHHHHHHTTTTEEEEEEEEEEGGGTTEEEEEEEETTTEEEEEEE
T ss_pred             CceEEEEEEcC------CHHHHHHHHHHcCCccccCCeecccCCCceEEEEECCCceEEEEec
Confidence            45679999987      4899999999999999654332   256799999999999999975

>3ghj_A Putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.47A {Uncultured bacterium}

Probab=99.22  E-value=4.7e-11  Score=73.47  Aligned_cols=56  Identities=23%  Similarity=0.259  Sum_probs=47.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee-eeCCCCeeEEEEeCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      +...|++|.++    ...++++.++|+++|+++... ..++++.+.+||.|||||.|||..
T Consensus        84 ~~~~h~~~~v~----~~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~  140 (141)
T 3ghj_A           84 WQQQHFSFRVE----KSEIEPLKKALESKGVSVHGPVNQEWMQAVSLYFADPNGHALEFTA  140 (141)
T ss_dssp             CCCCEEEEEEC----GGGHHHHHHHHHHTTCCCEEEEEEGGGTEEEEEEECTTCCEEEEEE
T ss_pred             CCCceEEEEEe----HHHHHHHHHHHHHCCCeEeCCcccCCCCceEEEEECCCCCEEEEEE
Confidence            46789999998    456999999999999999743 334566799999999999999975

>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}

Probab=99.22  E-value=6e-11  Score=69.78  Aligned_cols=56  Identities=13%  Similarity=0.153  Sum_probs=45.2

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      .+.|++|.++   ..+.++++.++|+++|+++...+. ...+.+.+||.|||||.|||.+
T Consensus        71 g~~hi~~~v~---d~~~v~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~  127 (127)
T 3e5d_A           71 GWAHIAISTG---TKEAVDELTEKLRQDGFAIAGEPRMTGDGYYESVVLDPEGNRIEITW  127 (127)
T ss_dssp             SCCCEEEECS---SHHHHHHHHHHHHHTTCCEEEEEEECTTSCEEEEEECTTSCEEEEEC
T ss_pred             ceEEEEEEcC---CHHHHHHHHHHHHHcCCeEecCcccCCCCcEEEEEECCCCCEEEEeC
Confidence            3689999997   234599999999999999966433 3345789999999999999963

>2qqz_A Glyoxalase family protein, putative; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 1.92A {Bacillus anthracis str}

Probab=99.20  E-value=8.1e-11  Score=70.03  Aligned_cols=55  Identities=18%  Similarity=0.211  Sum_probs=46.4

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ++..|++|.++      .++++.++|+++|+++...+ +..+.+++|++|||||.|||..+.
T Consensus        71 ~~~~~~~f~v~------d~~~~~~~l~~~G~~~~~~~-~~~g~~~~~~~DPdG~~iel~~~~  125 (126)
T 2qqz_A           71 AKRAHPAFYVL------KIDEFKQELIKQGIEVIDDH-ARPDVIRFYVSDPFGNRIEFMENK  125 (126)
T ss_dssp             CSSSCEEEEET------THHHHHHHHHHTTCCCEEEC-SSTTEEEEEEECTTSCEEEEEEEC
T ss_pred             CCceEEEEEcC------CHHHHHHHHHHcCCCccCCC-CCCCeeEEEEECCCCCEEEEEeCC
Confidence            45789999887      58899999999999997655 334678999999999999999864

>3l7t_A SMU.1112C, putative uncharacterized protein; metal binding protein; 1.80A {Streptococcus mutans}

Probab=99.19  E-value=6.1e-11  Score=69.53  Aligned_cols=55  Identities=29%  Similarity=0.356  Sum_probs=45.8

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEee
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      .+.+.|++|.++      .++++.++|+++|+++...+.. ..+.+.+|+.|||||.|||..
T Consensus        79 ~~g~~~~~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~e  134 (134)
T 3l7t_A           79 ACGLRHLAFYVE------DVEASRQELIALGIRVEEVRYDDYTGKKMAFFFDPDGLPLELHE  134 (134)
T ss_dssp             CSEEEEEEEECS------CHHHHHHHHHHHTCCCCCCEECTTSCCEEEEEECTTCCEEEEEC
T ss_pred             CCCeEEEEEEEC------CHHHHHHHHHhCCCcccceeccCCCceEEEEEECCCCCEEEEeC
Confidence            346789999997      4999999999999999765544 346789999999999999963

>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}

Probab=99.16  E-value=9.3e-11  Score=68.49  Aligned_cols=54  Identities=31%  Similarity=0.405  Sum_probs=44.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      +.+.|++|.++      .++++.++|+++|+++...+.. ..+.+.+|+.|||||.|||..
T Consensus        72 ~g~~~~~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~e  126 (126)
T 2p25_A           72 LGLRHLAFKVE------HIEEVIAFLNEQGIETEPLRVDDFTGKKMTFFFDPDGLPLELHE  126 (126)
T ss_dssp             SSCCCEEEECS------CHHHHHHHHHHTTCCCCCCEECTTTCCEEEEEECTTCCEEEEEC
T ss_pred             ccceEEEEEeC------CHHHHHHHHHHcCCccccccccCCCCcEEEEEECCCCCEEEeeC
Confidence            35679999987      4889999999999998655442 345689999999999999963

>2p7o_A Glyoxalase family protein; fosfomycin resistance protein, Mn binding, antibiotic resist metal binding protein, hydrolase; 1.44A {Listeria monocytogenes} PDB: 2p7k_A 2p7l_A 2p7m_A 2p7p_A 2p7q_A

Probab=99.16  E-value=1.1e-10  Score=69.64  Aligned_cols=58  Identities=12%  Similarity=0.212  Sum_probs=46.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +...|++|.++    ...++++.++|+++|+++...+.. ..+.+++|+.|||||.|||....
T Consensus        65 ~~~~h~~~~v~----~~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~  123 (133)
T 2p7o_A           65 RTYNHIAFQIQ----SEEVDEYTERIKALGVEMKPERPRVQGEGRSIYFYDFDNHLFELHAGT  123 (133)
T ss_dssp             CCSCEEEEECC----GGGHHHHHHHHHHHTCCEECCCCCCTTCCCEEEEECSSSCEEEEECSS
T ss_pred             CCeeEEEEEcC----HHHHHHHHHHHHHCCCcccCCCccCCCCeeEEEEECCCCCEEEEEcCC
Confidence            45789999997    356999999999999999765332 23458999999999999998754

>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z, glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP}

Probab=99.15  E-value=9.7e-11  Score=70.65  Aligned_cols=58  Identities=21%  Similarity=0.087  Sum_probs=45.6

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..+.|++|.++.   ...++++.++|+++|+++........+ +.+||.|||||.|||....
T Consensus        71 ~g~~h~~f~v~~---~~d~~~~~~~l~~~G~~~~~~~~~~~g-~~~~~~DPdG~~iel~~~~  128 (136)
T 2rk0_A           71 PGLDHLSFSVES---MTDLDVLEERLAKAGAAFTPTQELPFG-WILAFRDADNIALEAMLGR  128 (136)
T ss_dssp             SEEEEEEEEESS---HHHHHHHHHHHHHHTCCBCCCEEETTE-EEEEEECTTCCEEEEEEEC
T ss_pred             CCcceEEEEeCC---HHHHHHHHHHHHHCCCcccCccccCCc-eEEEEECCCCCEEEEEEcC
Confidence            356799999862   246999999999999998653322233 8999999999999999765

>1f9z_A Glyoxalase I; beta-alpha-beta-BETA-beta motif, protein-NI(II) complex, homodimer, lyase; 1.50A {Escherichia coli} SCOP: d.32.1.1 PDB: 1fa5_A 1fa6_A 1fa7_A 1fa8_A

Probab=99.14  E-value=3.6e-10  Score=67.02  Aligned_cols=55  Identities=16%  Similarity=0.316  Sum_probs=44.5

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.|++|.++      .++++.++|+++|+++...+  .+++..+++|+.|||||.|||....
T Consensus        71 ~~~~~~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~  127 (135)
T 1f9z_A           71 AYGHIALSVD------NAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK  127 (135)
T ss_dssp             SEEEEEEECS------CHHHHHHHHHHTTCEEEEEEEECTTSCCEEEEEECTTSCEEEEEEC-
T ss_pred             CccEEEEEeC------CHHHHHHHHHHCCCEEecCCccCCCCceeEEEEECCCCCEEEEEecC
Confidence            4679999887      48999999999999996543  3445457899999999999998754

>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*

Probab=99.12  E-value=1.2e-10  Score=68.73  Aligned_cols=58  Identities=22%  Similarity=0.340  Sum_probs=46.3

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCC--CCeeEEEEeCCCCCeEEEeeecC
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPD--GKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~--~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      ....|++|.++.     .++++.++|+++|+++...+  .++  ++.+.+|+.|||||.|||..+.+
T Consensus        71 ~~~~~~~~~v~d-----d~~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~  132 (133)
T 3ey7_A           71 VGSADLCFITDT-----VLSDAMKHVEDQGVTIMEGPVKRTGAQGAITSFYFRDPDGNLIEVSTYSN  132 (133)
T ss_dssp             TTCCEEEEECSS-----CHHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECTTCCEEEEEESCC
T ss_pred             CCccEEEEEeCc-----HHHHHHHHHHHCCCccccCCccccCCCCCeEEEEEECCCCCEEEEEecCC
Confidence            346899999882     49999999999999996543  333  33589999999999999998653

>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding loop, transferase; 2.50A {Serratia marcescens} SCOP: d.32.1.2

Probab=99.12  E-value=2.1e-10  Score=69.73  Aligned_cols=56  Identities=18%  Similarity=0.356  Sum_probs=46.3

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +...|++|.++    ...++++.++|+++|+++.....  .+.+.+|+.|||||.|||....
T Consensus        63 ~~~~hi~~~v~----~~d~~~~~~~l~~~G~~~~~~~~--~~~~~~~~~DPdG~~iel~~~~  118 (141)
T 1npb_A           63 SDYTHYAFTVA----EEDFEPLSQRLEQAGVTIWKQNK--SEGASFYFLDPDGHKLELHVGS  118 (141)
T ss_dssp             SCSCEEEEECC----HHHHHHHHHHHHHTTCCEEECCC--SSSEEEEEECTTCCEEEEEECC
T ss_pred             CCceEEEEEeC----HHHHHHHHHHHHHCCCeEeccCC--CceeEEEEECCCCCEEEEEECc
Confidence            45789999997    34599999999999999966443  3458999999999999998753

>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*

Probab=99.12  E-value=3.3e-10  Score=68.59  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=46.4

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +...|++|.++   +.+.++++.++|+++|+++...+.. ..+.+.+||.|||||.|||....
T Consensus        70 ~~~~~l~f~v~---~~~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~~  129 (138)
T 2a4x_A           70 GHRFAIAFEFP---DTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKDPDGNVVDLFAPL  129 (138)
T ss_dssp             SCSEEEEEECS---SHHHHHHHHHHHHHTTCCEEEEEEEETTTEEEEEEECTTCCEEEEEEEC
T ss_pred             CCeEEEEEEeC---CHHHHHHHHHHHHHCCCceeeCCcccCCCcEEEEEECCCCCEEEEEeCC
Confidence            45679999986   2345999999999999998654322 23478999999999999998753

>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*

Probab=99.12  E-value=3.1e-10  Score=68.42  Aligned_cols=56  Identities=13%  Similarity=0.059  Sum_probs=45.3

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHH---cCceEEeee--eCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVE---KGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~---~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +...|++|.++.   .+.++++.++|++   +|+++...+  .+++  +.+||.|||||.|||..+
T Consensus        71 ~~~~~~~~~v~~---~~dv~~~~~~l~~~~~~G~~~~~~p~~~~~g--~~~~~~DPdGn~iel~~~  131 (132)
T 3sk2_A           71 PRFSEIGIMLPT---GEDVDKLFNEWTKQKSHQIIVIKEPYTDVFG--RTFLISDPDGHIIRVCPL  131 (132)
T ss_dssp             CCCEEEEEEESS---HHHHHHHHHHHHHCSSSCCEEEEEEEEETTE--EEEEEECTTCCEEEEEEC
T ss_pred             CCcceEEEEeCC---HHHHHHHHHHHHhhhcCCCEEeeCCcccCce--EEEEEECCCCCEEEEEeC
Confidence            456789999951   3459999999999   999996543  3444  999999999999999875

>3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2, STRU genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.40A {Fulvimarina pelagi}

Probab=99.12  E-value=6.3e-10  Score=68.51  Aligned_cols=59  Identities=17%  Similarity=0.051  Sum_probs=46.4

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +...|++|.++   +...++++.++|+++|+++...+... .+.+.+||.|||||.|||....
T Consensus        68 ~~~~~l~f~v~---~~~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~~  127 (150)
T 3bqx_A           68 PGSMALAHNVR---AETEVAPLMERLVAAGGQLLRPADAPPHGGLRGYVADPDGHIWEIAFNP  127 (150)
T ss_dssp             CCSCEEEEECS---SGGGHHHHHHHHHHTTCEEEEEEECCTTSSEEEEEECTTCCEEEEEECT
T ss_pred             CCeEEEEEEeC---CHHHHHHHHHHHHHCCCEEecCCcccCCCCEEEEEECCCCCEEEEEeCC
Confidence            45679999984   24569999999999999986544332 2458999999999999998653

>1r9c_A Glutathione transferase; fosfomycin resistance protein, Mn binding, antibiotic resist transferase; 1.83A {Mesorhizobium loti} SCOP: d.32.1.2

Probab=99.10  E-value=1.6e-10  Score=70.14  Aligned_cols=57  Identities=14%  Similarity=0.222  Sum_probs=44.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +...|++|.++    ...++++.++|+++|+++...+.. ..+.+.+||.|||||.|||...
T Consensus        65 ~~~~h~~~~v~----~~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~  122 (139)
T 1r9c_A           65 RSYNHIAFKID----DADFDRYAERVGKLGLDMRPPRPRVEGEGRSIYFYDDDNHMFELHTG  122 (139)
T ss_dssp             CCSCEEEEECC----GGGHHHHHHHHHHHTCCBCCCCC-----CCEEEEECTTSCEEEEECC
T ss_pred             CCeeEEEEEcC----HHHHHHHHHHHHHCCCcccCCcccCCCCeEEEEEECCCCCEEEEEeC
Confidence            45789999998    366999999999999998654221 1356899999999999999864

>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.51A {Agrobacterium tumefaciens}

Probab=99.09  E-value=2.7e-10  Score=71.34  Aligned_cols=58  Identities=17%  Similarity=0.096  Sum_probs=46.6

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.|++|.++.   ...++++.++|+++|+++........+.+.+||.|||||.|||....
T Consensus        76 g~~hi~f~V~~---~~dld~~~~~l~~~G~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~~  133 (160)
T 3r4q_A           76 GQGHFCFYADD---KAEVDEWKTRFEALEIPVEHYHRWPNGSYSVYIRDPAGNSVEVGEGK  133 (160)
T ss_dssp             EECEEEEEESS---HHHHHHHHHHHHTTTCCCCEEEECTTSCEEEEEECTTCCEEEEEEGG
T ss_pred             ceeEEEEEeCC---HHHHHHHHHHHHHCCCEEeccccccCCcEEEEEECCCCCEEEEEeCC
Confidence            35899999941   45699999999999999965443334579999999999999998753

>1nki_A Probable fosfomycin resistance protein; potassium binding loop, manganese binding, transferase; 0.95A {Pseudomonas aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A 1nnr_A

Probab=99.09  E-value=2.3e-10  Score=69.08  Aligned_cols=55  Identities=20%  Similarity=0.429  Sum_probs=45.7

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +...|++|.++    ...++++.++|+++|+++...+.+  +.+.+|+.|||||.|||...
T Consensus        60 ~~~~h~~~~v~----~~d~~~~~~~l~~~G~~~~~~~~~--~~~~~~~~DPdG~~iel~~~  114 (135)
T 1nki_A           60 ADYTHYAFGIA----AADFARFAAQLRAHGVREWKQNRS--EGDSFYFLDPDGHRLEAHVG  114 (135)
T ss_dssp             SSSCEEEEEEC----HHHHHHHHHHHHHTTCCEEECCCS--SSCEEEEECTTCCEEEEESC
T ss_pred             CCcceEEEEcc----HHHHHHHHHHHHHCCCceecCCCC--CeEEEEEECCCCCEEEEEEC
Confidence            45779999997    356999999999999999764433  45899999999999999864

>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-2, PROT structure initiative; 1.82A {Burkholderia phytofirmans}

Probab=99.09  E-value=6.2e-10  Score=67.60  Aligned_cols=55  Identities=11%  Similarity=0.175  Sum_probs=44.2

Q ss_pred             eEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEeeec
Q 036856            9 FFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         9 ~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      |++|.++   +...++++.++|+++|+++...+... .+.+.+||.|||||.|||....
T Consensus        78 ~~~f~v~---~~~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~~  133 (141)
T 2rbb_A           78 LLNFDVD---TKEAVDKLVPVAIAAGATLIKAPYETYYHWYQAVLLDPERNVFRINNVL  133 (141)
T ss_dssp             EEEEECS---CHHHHHHHHHHHHHTTCEEEEEEEECTTSEEEEEEECTTSCEEEEEEEC
T ss_pred             EEEEEcC---CHHHHHHHHHHHHHcCCeEecCccccCCccEEEEEECCCCCEEEEEEcc
Confidence            8999887   23459999999999999985544332 3579999999999999998764

>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural GEN midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2

Probab=99.09  E-value=1.3e-10  Score=67.84  Aligned_cols=54  Identities=15%  Similarity=0.056  Sum_probs=43.4

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      +...|++|.++.   ...++++.++|+++|+++.....+.  .+.+|+.|||||.|||.
T Consensus        59 ~~~~~~~~~v~~---~~d~~~~~~~l~~~G~~~~~p~~~~--~~~~~~~DPdG~~iel~  112 (113)
T 1xqa_A           59 PKTFHVGFPQES---EEQVDKINQRLKEDGFLVEPPKHAH--AYTFYVEAPGGFTIEVM  112 (113)
T ss_dssp             CTTCCEEEECSS---HHHHHHHHHHHHHTTCCCCCCEEC---CEEEEEEETTTEEEEEE
T ss_pred             CceeEEEEEcCC---HHHHHHHHHHHHHCCCEEecCcCCC--cEEEEEECCCCcEEEEe
Confidence            457899999952   3469999999999999986543333  68999999999999996

>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A

Probab=99.08  E-value=1.7e-10  Score=70.69  Aligned_cols=58  Identities=19%  Similarity=0.280  Sum_probs=43.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCC--CCeeEEEEeCCCCCeEEEeeecC
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPD--GKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~--~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      ....|++|.+.     ..++++.++|+++|+++...+  .++  +..+.+||.|||||.|||.+...
T Consensus        84 ~g~~hi~f~~~-----~dl~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~  145 (152)
T 3huh_A           84 PGSADLCFITS-----TPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDGNLIEISQYVE  145 (152)
T ss_dssp             TTCCEEEEEES-----SCHHHHHHHHHHTTCCCSEEEEEEEETTEEEEEEEEECTTCCEEEEEEC--
T ss_pred             CCccEEEEEec-----CCHHHHHHHHHHCCCeEecCCccccCCCCcEEEEEEECCCCCEEEEEeccc
Confidence            34679999443     369999999999999985533  233  23589999999999999998654

>1ss4_A Glyoxalase family protein; structural genomics, PSI, prote structure initiative, midwest center for structural genomic unknown function; HET: CIT GSH; 1.84A {Bacillus cereus} SCOP: d.32.1.6

Probab=99.08  E-value=3.8e-10  Score=68.16  Aligned_cols=55  Identities=9%  Similarity=0.035  Sum_probs=44.2

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeee-eCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS-LPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~-~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.|++|.++      .++++.++|+++|+++...+ ....+.+.+||.|||||.|||..+.
T Consensus        95 g~~hl~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~~  150 (153)
T 1ss4_A           95 GYLRVMFTVE------DIDEMVSRLTKHGAELVGEVVQYENSYRLCYIRGVEGILIGLAEEL  150 (153)
T ss_dssp             EEEEEEEEES------CHHHHHHHHHHTTCEESSCCEEETTTEEEEEEECGGGCEEEEEEEC
T ss_pred             ceEEEEEEeC------CHHHHHHHHHHCCCeecCCCcccCCceEEEEEECCCCCEEEEEecc
Confidence            4569999886      49999999999999985432 2224678999999999999998764

>3rmu_A Methylmalonyl-COA epimerase, mitochondrial; structural genomics consortium, SGC, vitamin B12, mitochondr isomerase; HET: PG4; 1.80A {Homo sapiens} SCOP: d.32.1.0

Probab=99.07  E-value=3.2e-10  Score=66.43  Aligned_cols=54  Identities=15%  Similarity=0.239  Sum_probs=43.4

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEE--eCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFF--FDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~--~DPDGn~IEL~f   64 (68)
                      +.+.|++|.++      .++++.++|+++|+++...  ..+..+.+..|+  .|||||.|||..
T Consensus        76 ~g~~hi~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~e  133 (134)
T 3rmu_A           76 GGMHHICIEVD------NINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQ  133 (134)
T ss_dssp             CEEEEEEEEES------CHHHHHHHHHHTTCTTBCCCCEECTTSSEEEEECSCSSCCSCEEEEE
T ss_pred             CCceEEEEEcC------CHHHHHHHHHHcCCcccCCCcccCCCCceEEEEecCCCCcEEEEEEc
Confidence            46789999988      4889999999999998432  334445667777  899999999986

>3vw9_A Lactoylglutathione lyase; glyoxalase, lyase-lyase inhibitor complex; HET: EPE HPJ; 1.47A {Homo sapiens} PDB: 1qip_A* 1fro_A* 1qin_A* 1bh5_A* 2za0_A*

Probab=99.07  E-value=2.6e-10  Score=72.11  Aligned_cols=55  Identities=16%  Similarity=0.253  Sum_probs=44.6

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.|++|.++      .++++.++|+++|+++..........+.+||.|||||.|||..+.
T Consensus       127 g~~hl~f~v~------dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~  181 (187)
T 3vw9_A          127 GFGHIGIAVP------DVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPN  181 (187)
T ss_dssp             BEEEEEEECS------CHHHHHHHHHHTTCCEEECTTSSSSTTCEEEECTTCCEEEEECGG
T ss_pred             ceeEEEEEEC------CHHHHHHHHHHCCCeEeeCCccCCcceEEEEECCCCCEEEEEEcc
Confidence            5679999998      399999999999999976543333335689999999999998753

>1ecs_A Bleomycin resistance protein; arm-exchange, antibiotic inhibitor; HET: PG4; 1.70A {Klebsiella pneumoniae} SCOP: d.32.1.2 PDB: 1ewj_A* 1niq_B* 1mh6_A

Probab=99.06  E-value=1.1e-09  Score=65.48  Aligned_cols=56  Identities=18%  Similarity=0.053  Sum_probs=43.1

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceE-------EeeeeC-CCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQT-------FQRSLP-DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~-------~~~~~p-~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ++..|++|.++      .++++.++|+++|+++       ...+.. ..+.+++|+.|||||.|||....
T Consensus        57 ~~~~~~~~~v~------dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~~  120 (126)
T 1ecs_A           57 ASWFSCCLRLD------DLAEFYRQCKSVGIQETSSGYPRIHAPELQGWGGTMAALVDPDGTLLRLIQNE  120 (126)
T ss_dssp             GCCCEEEEEES------CHHHHHHHHHHTTCCBCSSSSSEEEEEEECTTSSEEEEEECTTSCEEEEEECC
T ss_pred             CcceEEEEEEC------CHHHHHHHHHHCCCccccccCccccCCcccCcccEEEEEECCCCCEEEEecch
Confidence            45678898875      5899999999999993       332222 23468999999999999998754

>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}

Probab=99.06  E-value=6.9e-10  Score=69.26  Aligned_cols=53  Identities=19%  Similarity=0.226  Sum_probs=43.5

Q ss_pred             eeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeeecC
Q 036856            7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      ..|++|.++      .++++.++|+++|+++...+  .|++  +.+||.|||||.|||.....
T Consensus        66 ~~hl~f~V~------d~d~~~~~l~~~G~~v~~~p~~~~~G--~~~~~~DPdG~~iel~~~~~  120 (144)
T 3r6a_A           66 NTQATFLVD------SLDKFKTFLEENGAEIIRGPSKVPTG--RNMTVRHSDGSVIEYVEHSK  120 (144)
T ss_dssp             GCCEEEEES------CHHHHHHHHHHTTCEEEEEEEEETTE--EEEEEECTTSCEEEEEEECC
T ss_pred             ceEEEEEeC------CHHHHHHHHHHcCCEEecCCccCCCc--eEEEEECCCCCEEEEEEcCC
Confidence            468888887      58999999999999985543  3444  88999999999999997653

>3oaj_A Putative ring-cleaving dioxygenase MHQO; structural genomics, protein structure initiative, PSI-biolo unknown function; 1.40A {Bacillus subtilis subsp}

Probab=99.06  E-value=4.1e-10  Score=79.35  Aligned_cols=56  Identities=21%  Similarity=0.211  Sum_probs=47.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +.+.|+||.++.    ..|+++.++|+++|+++..  ....+.+.+||.|||||.|||....
T Consensus        78 ~~~~hiaf~V~~----~dl~~~~~rL~~~Gv~~~~--~~~~g~~~~~f~DPdGn~iEl~~~~  133 (335)
T 3oaj_A           78 GQVGVTSYVVPK----GAMAFWEKRLEKFNVPYTK--IERFGEQYVEFDDPHGLHLEIVERE  133 (335)
T ss_dssp             SEEEEEEEEECT----TCHHHHHHHHHHTTCCCEE--EEETTEEEEEEECTTSCEEEEEECS
T ss_pred             CceEEEEEEecH----HHHHHHHHHHHhCcceeee--eccCCcEEEEEECCCCCEEEEEEeC
Confidence            568999999983    3599999999999999986  3445679999999999999999764

>3hpy_A Catechol 2,3-dioxygenase; repeated motifs, aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.94A {Pseudomonas SP} PDB: 3hpv_A 3hq0_A*

Probab=99.06  E-value=4.7e-10  Score=76.27  Aligned_cols=58  Identities=17%  Similarity=0.177  Sum_probs=47.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +.+.|+||.++   .+..+.++.++|+++|+++...  ..+.++.+++|++|||||.|||...
T Consensus       212 ~~~~Hiaf~v~---d~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~  271 (309)
T 3hpy_A          212 GKLHHCSFLLE---SWEQVLRAGDIMSMNEVNVDIGPTRHGVTRGCTIYAWDPSGNRFETFMG  271 (309)
T ss_dssp             TEEEEEEEECS---SHHHHHHHHHHHHHTTCCBSSCSEECSSSSEEEEEEECTTSCEEEEEEE
T ss_pred             CceeEEEEECC---CHHHHHHHHHHHHHCCCEEEeCCccCCCCccEEEEEECCCCCEEEEEeC
Confidence            56899999996   3566888999999999998532  3345667899999999999999865

>2pjs_A AGR_C_3564P, uncharacterized protein ATU1953; glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics; 1.85A {Agrobacterium tumefaciens str} SCOP: d.32.1.2

Probab=99.05  E-value=5.7e-10  Score=65.38  Aligned_cols=55  Identities=15%  Similarity=0.183  Sum_probs=43.8

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +...|++|.++      .++++.++|+++|+++...+... .+.+.+|+.|||||.|||..+
T Consensus        63 ~~~~~~~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~  118 (119)
T 2pjs_A           63 TDVPDLSIEVD------NFDEVHARILKAGLPIEYGPVTEAWGVQRLFLRDPFGKLINILSH  118 (119)
T ss_dssp             BCCCSEEEEES------CHHHHHHHHHHTTCCCSEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CceeEEEEEEC------CHHHHHHHHHHCCCccccCCccCCCccEEEEEECCCCCEEEEEec
Confidence            35678899885      59999999999999985443322 346899999999999999864

>4hc5_A Glyoxalase/bleomycin resistance protein/dioxygena; MCSG, GEBA genomes, structural genomics, midwest center for structural genomics; HET: MSE GOL; 1.45A {Sphaerobacter thermophilus}

Probab=99.05  E-value=6.8e-10  Score=65.47  Aligned_cols=53  Identities=25%  Similarity=0.349  Sum_probs=43.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEe--eeeCCCCeeEEEEeCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ--RSLPDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~--~~~p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      +...|++|.++      .++++.++|+++|+++..  ...+++ .+.+|+.|||||.|||..
T Consensus        78 ~~~~~~~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~~el~e  132 (133)
T 4hc5_A           78 GGYTGISLITR------DIDEAYKTLTERGVTFTKPPEMMPWG-QRATWFSDPDGNQFFLVE  132 (133)
T ss_dssp             CEEEEEEEEES------CHHHHHHHHHHTTCEESSSCEECTTS-CEEEEEECTTCEEEEEEE
T ss_pred             CCeEEEEEEeC------CHHHHHHHHHHCCCEeecCCCcCCCC-CEEEEEECCCCCEEEEEe
Confidence            56789999885      599999999999999964  233443 499999999999999975

>2za0_A Glyoxalase I; lyase, lactoylglutathione lyase, methyl- gerfelin; HET: MGI; 1.70A {Mus musculus} PDB: 1qip_A* 1fro_A* 1qin_A* 1bh5_A*

Probab=99.04  E-value=4.3e-10  Score=71.30  Aligned_cols=56  Identities=16%  Similarity=0.242  Sum_probs=45.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..+.|++|.++      .++++.++|+++|+++...+......+.+||+|||||.|||....
T Consensus       123 ~g~~hi~f~v~------dvd~~~~~l~~~G~~~~~~p~~~~~~~~~~~~DPdG~~iel~~~~  178 (184)
T 2za0_A          123 RGFGHIGIAVP------DVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPN  178 (184)
T ss_dssp             CCEEEEEEECS------CHHHHHHHHHHTTCCEEECTTSSSSTTCEEEECTTCCEEEEECTT
T ss_pred             CCeeEEEEEeC------CHHHHHHHHHHCCCeeecCCcCCCceeEEEEECCCCCEEEEEecC
Confidence            45689999987      599999999999999976443333346799999999999998653

>1mpy_A Catechol 2,3-dioxygenase; extradiol dioxygenase, non heme iron dioxygenase, metapyrocatechase, oxidoreductase; 2.80A {Pseudomonas putida} SCOP: d.32.1.3 d.32.1.3

Probab=99.03  E-value=9.8e-10  Score=74.29  Aligned_cols=59  Identities=25%  Similarity=0.274  Sum_probs=47.3

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      |++.|++|.++   .+..++++.++|+++|+++...+.  +.+..+++||+|||||.|||....
T Consensus       210 g~~~hi~f~v~---d~~dv~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~  270 (307)
T 1mpy_A          210 GRLHHVSFHLE---TWEDLLRAADLISMTDTSIDIGPTRHGLTHGKTIYFFDPSGNRNEVFCGG  270 (307)
T ss_dssp             SEEEEEEEECS---CHHHHHHHHHHHHHHTCCEEEEEEECSSTTCEEEEEECTTSCEEEEEECC
T ss_pred             CcceEEEEEcC---CHHHHHHHHHHHHHCCCceeeCCccCCCCCceEEEEECCCCcEEEEEecc
Confidence            56899999997   355689999999999999854333  334467999999999999998753

>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}

Probab=99.02  E-value=1.4e-09  Score=67.90  Aligned_cols=58  Identities=17%  Similarity=0.118  Sum_probs=45.1

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeecC
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      +...|++|.++.   ...++++.++|+++|+++...  ..++ + +.+||.|||||.|||.....
T Consensus        66 ~~~~~l~f~v~d---~~dvd~~~~~l~~~G~~i~~~p~~~~~-G-~~~~~~DPdG~~iel~~~~~  125 (148)
T 3rhe_A           66 GGGMELSFQVNS---NEMVDEIHRQWSDKEISIIQPPTQMDF-G-YTFVGVDPDEHRLRIFCLKR  125 (148)
T ss_dssp             --CEEEEEECSC---HHHHHHHHHHHHHTTCCEEEEEEEETT-E-EEEEEECTTCCEEEEEEEC-
T ss_pred             CCeEEEEEEcCC---HHHHHHHHHHHHhCCCEEEeCCeecCC-C-cEEEEECCCCCEEEEEEcCh
Confidence            345789999872   245999999999999999543  3355 3 89999999999999998754

>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics, PSI protein structure initiative; NMR {Agrobacterium tumefaciens}

Probab=99.02  E-value=5e-10  Score=69.31  Aligned_cols=57  Identities=18%  Similarity=0.128  Sum_probs=45.6

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +...|++|.++   ....++++.++|+++|+++...  ..+++  +.+||.|||||.|||..+.
T Consensus        85 ~~~~hl~f~v~---d~~dv~~~~~~l~~~G~~~~~~~~~~~~g--~~~~~~DPdG~~iel~~~~  143 (144)
T 2kjz_A           85 GGGGELAFRVE---NDAQVDETFAGWKASGVAMLQQPAKMEFG--YTFTAADPDSHRLRVYAFA  143 (144)
T ss_dssp             SSSCEEEEECS---SHHHHHHHHHHHHHTTCCCCSCCEEETTE--EEEEECCTTCCEEEEEEEC
T ss_pred             CCceEEEEEeC---CHHHHHHHHHHHHHCCCeEecCceecCCc--eEEEEECCCCCEEEEEecC
Confidence            46789999996   2346999999999999998543  23333  8999999999999998764

>3gm5_A Lactoylglutathione lyase and related lyases; sheet-helix-sheet-sheet-sheet motif, isomerase; HET: CIT; 2.00A {Thermoanaerobacter tengcongensis}

Probab=99.02  E-value=6.7e-10  Score=68.64  Aligned_cols=53  Identities=11%  Similarity=0.090  Sum_probs=44.7

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCC--CCeEEEeee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPD--GNGLEVASR   65 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPD--Gn~IEL~f~   65 (68)
                      .+.|+||.++      .+++++++|+++|+++.... +..+.+.+|+.|||  |+.|||...
T Consensus       104 g~~Hiaf~v~------di~~~~~~l~~~G~~~~~~~-~~~g~~~~~~~dpd~~G~~iEl~e~  158 (159)
T 3gm5_A          104 GIHHIAFVVK------DMDRKVEELYRKGMKVIQKG-DFEGGRYAYIDTLRALKVMIELLEN  158 (159)
T ss_dssp             EEEEEEEECS------CHHHHHHHHHHTTCCEEEEE-EETTEEEEEESCHHHHSSEEEEEEE
T ss_pred             eEEEEEEEcC------CHHHHHHHHHHCCCcEeecc-ccCCeeEEEEeccccCcEEEEEEec
Confidence            4789999997      48999999999999995543 23457999999999  999999875

>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8

Probab=99.01  E-value=2e-10  Score=69.66  Aligned_cols=59  Identities=19%  Similarity=0.104  Sum_probs=42.6

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeecC
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      .+.|++|.++   .+..++++.++|+++|+++.....|....+..||+|||||.|||....+
T Consensus        77 ~~~hi~~~v~---d~~~l~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~DPdG~~iel~~~~~  135 (139)
T 1twu_A           77 PDSLLVFYVP---NAVELAAITSKLKHMGYQEVESENPYWSNGGVTIEDPDGWRIVFMNSKG  135 (139)
T ss_dssp             TTCEEEEECC---CHHHHHHHHHHHHHTTCCEECCSSHHHHSSEEEEECTTCCEEEEESSCC
T ss_pred             CccEEEEEeC---CcchHHHHHHHHHHcCCcCcCCCCcccCCCCeEEECCCCCEEEEEEcCC
Confidence            3579999986   3555799999999999998732222111111389999999999987654

>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}

Probab=99.01  E-value=4.2e-10  Score=69.66  Aligned_cols=56  Identities=20%  Similarity=0.185  Sum_probs=44.6

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEee-ee--CC-CCeeEEEEeCCCCCeEEEee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SL--PD-GKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~--p~-~~~~QiF~~DPDGn~IEL~f   64 (68)
                      .+.|++|.++   +.+.++++.++|+++|+++... +.  +. .+.+.+||.|||||.|||..
T Consensus        86 g~~hi~f~v~---~~~dv~~~~~~l~~~G~~~~~~~p~~~~~g~~~~~~~~~DPdG~~iel~~  145 (146)
T 3ct8_A           86 GLNHLAFHAA---SREKVDELTQKLKERGDPILYEDRHPFAGGPNHYAVFCEDPNRIKVEIVA  145 (146)
T ss_dssp             SCCEEEEECS---CHHHHHHHHHHHHHHTCCBCCTTTTTCTTCTTCCEEEEECTTCCEEEEEC
T ss_pred             CceEEEEECC---CHHHHHHHHHHHHHcCCccccCCCccccCCCceEEEEEECCCCCEEEEEe
Confidence            4679999985   2446999999999999999652 32  22 24689999999999999975

>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator, solvent-exposed residue, thiocoraline, protein binding, peptide binding Pro; 2.15A {Micromonospora SP}

Probab=99.00  E-value=2e-09  Score=64.89  Aligned_cols=52  Identities=13%  Similarity=-0.015  Sum_probs=42.1

Q ss_pred             eEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeeec
Q 036856            9 FFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         9 ~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      |++|.++      .++++.++|+++|+++...... ..+.+.++|.|||||.|||..+.
T Consensus        71 ~~~~~v~------dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~~  123 (137)
T 3itw_A           71 QVIVWVS------DVDEHFMRSTAAGADIVQPLQDKPWGLRQYLVRDLEGHLWEFTRHL  123 (137)
T ss_dssp             EEEEEES------CHHHHHHHHHHTTCEEEEEEEEETTTEEEEEEECSSSCEEEEEECC
T ss_pred             EEEEEeC------CHHHHHHHHHHcCCeeccCccccCCCcEEEEEECCCCCEEEEEEEc
Confidence            7888776      5899999999999998543332 23569999999999999999764

>2i7r_A Conserved domain protein; structural genomics conserved domain, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae} SCOP: d.32.1.2

Probab=98.99  E-value=1.8e-09  Score=63.43  Aligned_cols=51  Identities=16%  Similarity=0.152  Sum_probs=40.8

Q ss_pred             eEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEeee
Q 036856            9 FFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         9 ~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      |++|.++      .++++.++|+++|+++...+. ...+.+.+||.|||||.|||...
T Consensus        66 ~~~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~  117 (118)
T 2i7r_A           66 IIHIEVE------DVDQNYKRLNELGIKVLHGPTVTDWGTESLLVQGPAGLVLDFYRM  117 (118)
T ss_dssp             EEEEECS------CHHHHHHHHHHHTCCEEEEEEECTTSCEEEEEECGGGCEEEEEEC
T ss_pred             EEEEEEC------CHHHHHHHHHHCCCceecCCccccCccEEEEEECCCccEEEEEec
Confidence            7888775      599999999999999844333 22356899999999999999863

>2c21_A Trypanothione-dependent glyoxalase I; lyase, glutathionylspermidine, methylglyoxal, detoxification; 2.0A {Leishmania major} SCOP: d.32.1.1

Probab=98.98  E-value=1.5e-09  Score=66.04  Aligned_cols=51  Identities=14%  Similarity=0.163  Sum_probs=42.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEE-EEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQV-FFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~Qi-F~~DPDGn~IEL~f~   65 (68)
                      ..+.|++|.++      .++++.++|+++|+++...    .+.+.+ ||.|||||.|||...
T Consensus        76 ~~~~h~~f~v~------d~~~~~~~l~~~G~~~~~~----~g~~~~~~~~DPdG~~iel~~~  127 (144)
T 2c21_A           76 EAYGHIAIGVE------DVKELVADMRKHDVPIDYE----DESGFMAFVVDPDGYYIELLNE  127 (144)
T ss_dssp             SSEEEEEEEES------CHHHHHHHHHHTTCCEEEE----CSSSSEEEEECTTSCEEEEEEH
T ss_pred             CCceEEEEEeC------CHHHHHHHHHHCCCEEecc----CCcEEEEEEECCCCCEEEEEEc
Confidence            35679999987      4889999999999998665    344566 999999999999864

>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}

Probab=98.97  E-value=2.9e-09  Score=64.69  Aligned_cols=52  Identities=19%  Similarity=0.189  Sum_probs=38.0

Q ss_pred             eeEEEecChhhccccHHHHHHHHHHcCce-EE-eeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQ-TF-QRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~-~~-~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .|++|.++      .++++.++|+++|++ +. +......+.+ ++|.|||||.|||..+.
T Consensus        68 ~~l~f~v~------dvd~~~~~l~~~G~~~~~~~p~~~~~G~~-~~~~DPdGn~iel~~~~  121 (128)
T 3g12_A           68 LQLGFQIT------DLEKTVQELVKIPGAMCILDPTDMPDGKK-AIVLDPDGHSIELCELE  121 (128)
T ss_dssp             EEEEEEES------CHHHHHHHHTTSTTCEEEEEEEECC-CEE-EEEECTTCCEEEEEC--
T ss_pred             eEEEEEeC------CHHHHHHHHHHCCCceeccCceeCCCccE-EEEECCCCCEEEEEEec
Confidence            35777765      499999999999999 64 3322223445 99999999999998764

>2r6u_A Uncharacterized protein; structural genomics, PSI-2, RHA04853, MCSG, protein structur initiative, midwest center for structural genomics; 1.50A {Rhodococcus SP}

Probab=98.97  E-value=3.7e-09  Score=65.77  Aligned_cols=52  Identities=12%  Similarity=0.105  Sum_probs=42.0

Q ss_pred             eEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeecC
Q 036856            9 FFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         9 ~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      |++|.++      .++++.++|+++|+++...  ..|..+ +++||.|||||.|||.....
T Consensus        93 ~l~f~v~------dld~~~~~l~~~G~~~~~~~~~~~~~g-~~~~~~DPdG~~iel~~~~~  146 (148)
T 2r6u_A           93 VVTVDVE------SIESALERIESLGGKTVTGRTPVGNMG-FAAYFTDSEGNVVGLWETAR  146 (148)
T ss_dssp             EEEEECS------CHHHHHHHHHHTTCEEEEEEEEETTTE-EEEEEECTTSCEEEEEEECC
T ss_pred             EEEEEcC------CHHHHHHHHHHcCCeEecCCeecCCCE-EEEEEECCCCCEEEEEecCC
Confidence            7888775      5999999999999999654  344223 89999999999999997653

>2wl9_A Catechol 2,3-dioxygenase; aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.90A {Rhodococcus SP} PDB: 2wl3_A

Probab=98.96  E-value=3.1e-09  Score=72.09  Aligned_cols=59  Identities=12%  Similarity=0.134  Sum_probs=47.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +.+.|++|.++   .+..++++.++|+++|+++...+  .+.++.+.+||+|||||.|||....
T Consensus       208 ~~~~hiaf~v~---d~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~  268 (305)
T 2wl9_A          208 KRINHLMIEYT---HLDDLGYAHDLVRQQKIDVTLQIGKHSNDEALTFYCANPSGWLWEPGWGS  268 (305)
T ss_dssp             SSEEEEEEEES---SHHHHHHHHHHHHHTTCCEEEEEEECTTTCCEEEEEECTTSSEEEEEECC
T ss_pred             CCceEEEEEcC---CHHHHHHHHHHHHHcCCCccccCcccCCCCcEEEEEECCCCCEEEEEeCC
Confidence            46789999987   34568899999999999996543  3445567899999999999998743

>2rk9_A Glyoxalase/bleomycin resistance protein/dioxygena; NYSGXRC, structural genomics, protein structur initiative II; 1.60A {Vibrio splendidus}

Probab=98.95  E-value=2.9e-09  Score=65.03  Aligned_cols=52  Identities=13%  Similarity=0.051  Sum_probs=40.2

Q ss_pred             EEEecChhhccccHHHHHHHHHH-cCceEEeeee--------CCCCeeEEEEeCCCCCeEEEeeecC
Q 036856           10 FSFGMSEAESLQFLSFGCFLLVE-KGIQTFQRSL--------PDGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus        10 ~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~~~--------p~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      ++|.++      .++++.++|++ +|+++...+.        ...+.++++|.|||||.|||.....
T Consensus        77 ~~~~v~------dvd~~~~~l~~~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~DPdG~~iel~~~~~  137 (145)
T 2rk9_A           77 FQWDVI------DIEPLYQRVNESAADSIYLALESKSYQCGDSIATQKQFMVQTPDGYLFRFCQDIH  137 (145)
T ss_dssp             EEEECS------CHHHHHHHHHHHHGGGEEEEEEEEEC-----CCEEEEEEEECTTCCEEEEEEC--
T ss_pred             EEEEEC------CHHHHHHHHHhhCCCeEecCccccccccCCCCCcceEEEEECCCCCEEEEEEcCC
Confidence            677665      58999999999 9999865443        2345689999999999999987643

>3oaj_A Putative ring-cleaving dioxygenase MHQO; structural genomics, protein structure initiative, PSI-biolo unknown function; 1.40A {Bacillus subtilis subsp}

Probab=98.95  E-value=1.3e-09  Score=76.84  Aligned_cols=58  Identities=10%  Similarity=0.072  Sum_probs=47.6

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .|++.|+||.++   ....+.++.++|+++|+++... +.....+++||+|||||.|||...
T Consensus       213 ~g~~~HiAf~v~---d~~~l~~~~~~L~~~G~~~~~~-~~r~~~~siYfrDP~G~~iEl~td  270 (335)
T 3oaj_A          213 AGTVHHIAWRAN---DDEDQLDWQRYIASHGYGVTPV-RDRNYFNAIYFREHGEILFEIATD  270 (335)
T ss_dssp             BTEEEEEEEEES---SHHHHHHHHHHHHHTTCCCCCC-EECSSSEEEEEECTTSCEEEEEES
T ss_pred             CcceEEEEEEcC---CHHHHHHHHHHHHHCCCCcccc-ccCCcEEEEEEECCCCcEEEEEeC
Confidence            467999999998   2445899999999999997543 234456899999999999999876

>2zyq_A Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; extradiol, DHSA, TB, catechol, cholesterol, steroid, aromatic hydrocarbons catabolism; HET: TAR; 2.00A {Mycobacterium tuberculosis} PDB: 2zi8_A*

Probab=98.95  E-value=3.7e-09  Score=71.23  Aligned_cols=59  Identities=5%  Similarity=0.071  Sum_probs=47.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +.+.|++|.++   .+..++++.++|+++|+++...  ..+.+..+.+||+|||||.|||....
T Consensus       211 ~g~~h~af~v~---d~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~  271 (300)
T 2zyq_A          211 SGIVHLMVEVE---QADDVGLCLDRALRRKVPMSATLGRHVNDLMLSFYMKTPGGFDIEFGCEG  271 (300)
T ss_dssp             SSEEEEEEEBS---SHHHHHHHHHHHHHTTCCEEEEEEEESSSCCEEEEEECTTSSEEEEEECC
T ss_pred             CCceEEEEEeC---CHHHHHHHHHHHHHCCCceeecccccCCCCeEEEEEECCCCCEEEEEeCC
Confidence            45789999987   2455888999999999999653  33445578899999999999998643

>3zw5_A Glyoxalase domain-containing protein 5; lyase; 1.60A {Homo sapiens}

Probab=98.95  E-value=1e-09  Score=67.46  Aligned_cols=54  Identities=20%  Similarity=0.186  Sum_probs=41.4

Q ss_pred             eeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC--C--CCeeEEEEeCCCCCeEEEeee
Q 036856            7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP--D--GKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p--~--~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..|++|.+.     ..++++.++|+++|+++...+.+  +  +..+++||.|||||.|||..+
T Consensus        90 ~~~~~~~~~-----~dl~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~DPdGn~iEl~~y  147 (147)
T 3zw5_A           90 SLDICLITE-----VPLEEMIQHLKACDVPIEEGPVPRTGAKGPIMSIYFRDPDRNLIEVSNY  147 (147)
T ss_dssp             CCEEEEECS-----SCHHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECTTCCEEEEEEC
T ss_pred             CceEEEEec-----cCHHHHHHHHHHcCCceeeCcccccCCCCceEEEEEECCCCCEEEEecC
Confidence            357777432     46999999999999999654432  2  335789999999999999864

>1zsw_A Metallo protein, glyoxalase family protein; hypothetical protein from glyoxalase family, structural GENO PSI, protein structure initiative; 1.65A {Bacillus cereus} SCOP: d.32.1.10 d.32.1.10

Probab=98.95  E-value=1.7e-09  Score=74.80  Aligned_cols=57  Identities=16%  Similarity=0.252  Sum_probs=47.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +.+.|++|.++   +...++++.++|+++|+++. .+....+.+.+||.|||||.|||...
T Consensus       242 ~~~~hiaf~v~---~~~dv~~~~~~l~~~G~~~~-~~~~~~~~~~~~~~DPdG~~iEl~~~  298 (338)
T 1zsw_A          242 GSIHHLAIRVK---NDAELAYWEEQVKQRGFHSS-GIIDRFYFKSLYFRESNGILFEIATD  298 (338)
T ss_dssp             TCEEEEEEEES---SHHHHHHHHHHHHHTTCCCC-CCEECSSEEEEEEECTTCCEEEEEEE
T ss_pred             CceEEEEEEeC---CHHHHHHHHHHHHHCCCcee-eeeecCceEEEEEECCCCCEEEEEEc
Confidence            46789999997   23459999999999999996 33344667899999999999999975

>3hpy_A Catechol 2,3-dioxygenase; repeated motifs, aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.94A {Pseudomonas SP} PDB: 3hpv_A 3hq0_A*

Probab=98.94  E-value=1.9e-09  Score=73.19  Aligned_cols=59  Identities=20%  Similarity=0.171  Sum_probs=48.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC--CCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP--DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p--~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..+.|++|.++   +...|+++.++|+++|+++...+..  ....+.+||+|||||.|||....
T Consensus        64 ~~~~h~a~~v~---~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~f~DPdG~~iel~~~~  124 (309)
T 3hpy_A           64 AGIDFFGFKVL---DKATLEKLDADLQAYGLTTTRIPAGEMLETGERVRFELPSGHLIELYAEK  124 (309)
T ss_dssp             CEEEEEEEEES---CHHHHHHHHHHHHHHTCCCEEECTTSSTTBCCEEEEECTTSCEEEEESCB
T ss_pred             CceeEEEEEEC---CHHHHHHHHHHHHhCCCceeeccCCccCCCeeEEEEECCCCCEEEEEEcc
Confidence            46789999998   2345999999999999999765432  35568999999999999998754

>2qnt_A AGR_C_3434P, uncharacterized protein ATU1872; glyoxalase/bleomycin resistance protein/dioxygenase family R protein, PSI-2, MCSG; HET: MSE EPE; 1.40A {Agrobacterium tumefaciens str}

Probab=98.94  E-value=2e-09  Score=64.86  Aligned_cols=55  Identities=15%  Similarity=0.173  Sum_probs=42.4

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +...|++|.++      .++++.++|++ |+++...+.. ..+.+.+|+.|||||.|||....
T Consensus        73 ~~~~~~~~~v~------dv~~~~~~l~~-G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~~  128 (141)
T 2qnt_A           73 RRNMLLYFEHA------DVDAAFQDIAP-HVELIHPLERQAWGQRVFRFYDPDGHAIEVGESL  128 (141)
T ss_dssp             CSSCEEEEEES------CHHHHHC-CGG-GSCEEEEEEECTTSCEEEEEECTTCCEEEEEECC
T ss_pred             CCceEEEEEeC------cHHHHHHHHHc-CCccccCCccCCCCCEEEEEECCCCCEEEEEecc
Confidence            35678999875      58999999999 9998543332 24568999999999999998764

>3oa4_A Glyoxalase, BH1468 protein; structural genomics, protein structure initiative, glyoxalas PSI-biology, lyase; 1.94A {Bacillus halodurans}

Probab=98.93  E-value=1.6e-09  Score=67.63  Aligned_cols=57  Identities=14%  Similarity=0.302  Sum_probs=44.7

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee-eeCC-CCeeEEEEe--CCCCCeEEEeeecC
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SLPD-GKVKQVFFF--DPDGNGLEVASRRD   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~p~-~~~~QiF~~--DPDGn~IEL~f~~~   67 (68)
                      ..+.|++|.++      .++++.++|+++|+++... +... .+.+..|+.  |||||.|||.....
T Consensus        78 ~g~~Hiaf~V~------Did~~~~~l~~~G~~~~~~~~~~~~~g~~~~f~~~~DPdG~~iEl~~~~~  138 (161)
T 3oa4_A           78 EGIHHIAIGVK------SIEERIQEVKENGVQMINDEPVPGARGAQVAFLHPRSARGVLYEFCEKKE  138 (161)
T ss_dssp             SEEEEEEEECS------CHHHHHHHHHHTTCCBSCSSCEECGGGCEEEEBCGGGTTTCCEEEEECCC
T ss_pred             CCeEEEEEEEC------CHHHHHHHHHHCCCEecccCcccCCCCcEEEEEeccCCCeEEEEEEecCC
Confidence            45789999987      4899999999999998543 3322 355777884  99999999997654

>3lm4_A Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein structure initiative, 2hydroxyl 6 OXO 6 phenyl hexa 2-4 dienoic acid, peroxide; HET: HPX; 1.80A {Rhodococcus jostii}

Probab=98.93  E-value=3.8e-09  Score=73.57  Aligned_cols=59  Identities=19%  Similarity=0.225  Sum_probs=48.0

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeee
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .+.+.|++|.++   ..+.++++.++|+++|+++...+  .+.++.+.+|++|||||.|||...
T Consensus       213 ~~~~~Hiaf~v~---d~~~v~~~~~~l~~~G~~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~  273 (339)
T 3lm4_A          213 HGKLHHLAFFYG---TGQHNIDAVEMFRDYDIQIEAGPDKHGITQSQFLYVFEPGGNRIELFGE  273 (339)
T ss_dssp             CSEEEEEEEECC---CHHHHHHHHHHHHHTTCEEEEEEEEETGGGEEEEEEECTTSCEEEEECC
T ss_pred             CCceeEEEEEeC---CHHHHHHHHHHHHHCCCeEEeCCcccccCCceEEEEEcCCCCEEEEEEc
Confidence            456899999997   35679999999999999986433  244667889999999999999743

>3fcd_A Lyase, ORF125EGC139; lactoylglutathione lyase, YECM, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.92A {Uncultured bacterium} SCOP: d.32.1.0

Probab=98.92  E-value=6e-09  Score=63.14  Aligned_cols=54  Identities=11%  Similarity=-0.089  Sum_probs=40.2

Q ss_pred             eeEEEecChhhccccHHHHHHHHHHcCce----EE-eeeeCCCCeeEEEEeCCCCCeEEEeeecC
Q 036856            8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQ----TF-QRSLPDGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~----~~-~~~~p~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      .|++|.++      .++++.++|+++|+.    +. .......+.+++||+|||||.|||.....
T Consensus        68 ~~l~~~v~------dv~~~~~~l~~~g~~~g~~i~~~~~~~~~g~~~~~~~DPdG~~iel~~~~~  126 (134)
T 3fcd_A           68 VAICIDVS------DIDSLHTKLSPALENLPADQVEPLKNMPYGQREFQVRMPDGDWLNFTAPLA  126 (134)
T ss_dssp             EEEEEECS------CHHHHHHHHHHHHTTSCGGGEEEEEECTTSEEEEEEECTTSCEEEEEEECC
T ss_pred             EEEEEEeC------CHHHHHHHHHhcCCccCCccccCCcccCCCcEEEEEECCCCCEEEEEEccc
Confidence            47888876      489999999977653    32 22222246699999999999999998754

>2ehz_A 1,2-dihydroxynaphthalene dioxygenase; extradiol dioxygenase, protein substrate complex, oxidoreduc; 1.35A {Pseudomonas SP} PDB: 2ei0_A* 2ei1_A* 2ei3_A* 2ei2_A

Probab=98.92  E-value=4.3e-09  Score=71.42  Aligned_cols=58  Identities=16%  Similarity=0.165  Sum_probs=46.6

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +.+.|++|.++   .+..+.++.++|+++|+++...+  .+.++.+.+||+|||||.|||...
T Consensus       211 ~~~~hiaf~v~---d~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~  270 (302)
T 2ehz_A          211 KRLNHLMLEYT---HMEDLGYTHQQFVKNEIDIALQLGIHANDKALTFYGATPSGWLIEPGWR  270 (302)
T ss_dssp             SSEEEEEEEES---SHHHHHHHHHHHHHTTCCEEEEEEECTTTCCEEEEEECTTSSEEEEEEC
T ss_pred             CceeEEEEEcC---CHHHHHHHHHHHHHCCCcEEeCCcccCCCCceEEEEECCCCcEEEEEEC
Confidence            45789999987   35568889999999999996433  244556789999999999999865

>1jc4_A Methylmalonyl-COA epimerase; vicinal oxygen chelate superfamily, isomerase; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: d.32.1.4 PDB: 1jc5_A

Probab=98.90  E-value=2.5e-09  Score=64.16  Aligned_cols=56  Identities=16%  Similarity=0.208  Sum_probs=43.8

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEE-eeeeC-CCCeeEEEE--eCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTF-QRSLP-DGKVKQVFF--FDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~-~~~~p-~~~~~QiF~--~DPDGn~IEL~f~~   66 (68)
                      ..+.|++|.++      .++++.++|+++|+++. ..+.. ..+.+..|+  .|||||.|||....
T Consensus        87 ~g~~h~~~~v~------d~~~~~~~l~~~G~~~~~~~p~~~~~g~~~~~~~~~DPdG~~iel~~~~  146 (148)
T 1jc4_A           87 AGLHHMAWRVD------DIDAVSATLRERGVQLLYDEPKLGTGGNRINFMHPKSGKGVLIELTQYP  146 (148)
T ss_dssp             CEEEEEEEECS------CHHHHHHHHHHHTCCBSCSSCEECSSSCEEEEBCGGGGTTSCEEEEECC
T ss_pred             CceEEEEEECC------CHHHHHHHHHHCCCeecCcCcccCCCceEEEEEeecCCCcEEEEEEecC
Confidence            35679999987      38999999999999986 32332 344567777  99999999998764

>3zi1_A Glyoxalase domain-containing protein 4; isomerase; 1.90A {Homo sapiens}

Probab=98.90  E-value=7.5e-09  Score=72.25  Aligned_cols=56  Identities=18%  Similarity=0.254  Sum_probs=45.1

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee----C-CCCeeEEEEeCCCCCeEEEeee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL----P-DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~----p-~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .+.|++|.++.    ..++++.++|+++|+++.....    | ..+.+.+||+|||||.|||...
T Consensus       220 ~~~hiaf~v~~----~dld~~~~rl~~~G~~i~~~~~~~~~pg~~g~~~~~f~DPdG~~iEl~~~  280 (330)
T 3zi1_A          220 AFGRIAFSCPQ----KELPDLEDLMKRENQKILTPLVSLDTPGKATVQVVILADPDGHEICFVGD  280 (330)
T ss_dssp             TCCEEEEEECG----GGHHHHHHHHHHTTCEEEEEEEEECCTTSCCEEEEEEECTTCCEEEEEEH
T ss_pred             CCceEEEEEEc----ccHHHHHHHHHHcCCcEecCceecccCCCCceEEEEEECCCCCEEEEEEe
Confidence            46699999983    3499999999999999755433    2 2356899999999999999864

>1zsw_A Metallo protein, glyoxalase family protein; hypothetical protein from glyoxalase family, structural GENO PSI, protein structure initiative; 1.65A {Bacillus cereus} SCOP: d.32.1.10 d.32.1.10

Probab=98.88  E-value=5e-09  Score=72.38  Aligned_cols=58  Identities=10%  Similarity=0.032  Sum_probs=46.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +.+.|++|.++   +...++++.++|+++|+++...... .+.+.+||.|||||.|||....
T Consensus       100 ~~~~hiaf~v~---~~~dld~~~~~l~~~G~~~~~~~~~-~G~~~~~f~DPdG~~iel~~~~  157 (338)
T 1zsw_A          100 NAITRIGLLVP---SEDSLHYWKERFEKFDVKHSEMTTY-ANRPALQFEDAEGLRLVLLVSN  157 (338)
T ss_dssp             SEEEEEEEEES---CHHHHHHHHHHHHHTTCEECCSEEE-TTEEEEEEECTTCCEEEEEECT
T ss_pred             CCeeeEEEEcC---CHHHHHHHHHHHHHCCCcccccccc-CCcEEEEEECCCCCEEEEEEcC
Confidence            34789999997   2335999999999999999654433 3459999999999999998764

>3bt3_A Glyoxalase-related enzyme, ARAC type; VOC superfamily, PSI-2, NYSGXRC, structural genomics, prote structure initiative; 2.50A {Clostridium phytofermentans}

Probab=98.86  E-value=6.6e-09  Score=63.75  Aligned_cols=47  Identities=13%  Similarity=0.081  Sum_probs=38.1

Q ss_pred             cccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeecC
Q 036856           20 LQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus        20 l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      ...++++.++|+++|+++...  ..| .+.+.+||.|||||.|||..+..
T Consensus        98 v~dvd~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~iel~~~~~  146 (148)
T 3bt3_A           98 IEGIDALHKYVKENGWDQISDIYTQP-WGARECSITTTDGCILRFFESIQ  146 (148)
T ss_dssp             EECHHHHHHHHHHTTCCCBCCCEEET-TTEEEEEEECTTSCEEEEEEEC-
T ss_pred             cCCHHHHHHHHHHcCCccccCcccCC-CccEEEEEECCCCCEEEEeeecc
Confidence            567999999999999997442  334 35689999999999999998754

>1kw3_B 2,3-dihydroxybiphenyl dioxygenase; four TIME repetitions of the beta-alpha-beta-BETA-beta motif oxidoreductase; 1.45A {Pseudomonas SP} SCOP: d.32.1.3 d.32.1.3 PDB: 1dhy_A 1eiq_A 1eir_A* 1eil_A 1kw6_B* 1kw8_B* 1kw9_B* 1kwb_B 1kwc_B*

Probab=98.86  E-value=6e-09  Score=69.93  Aligned_cols=58  Identities=7%  Similarity=0.039  Sum_probs=46.3

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCC-eEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGN-GLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn-~IEL~f~~   66 (68)
                      +.+.|++|.++   .+..+.++.++|+ +|+++...  ..+.+..+++||+||||| .|||....
T Consensus       205 ~~~~hiaf~v~---d~~~v~~~~~~l~-~G~~~~~~p~~~~~~~~~~~y~~DPdG~~~iEl~~~~  265 (292)
T 1kw3_B          205 KRIHHFMLQAN---TIDDVGYAFDRLD-AAGRITSLLGRHTNDQTLSFYADTPSPMIEVEFGWGP  265 (292)
T ss_dssp             SSEEEEEEEBS---SHHHHHHHHHHHH-HTTCBCBCSEEESSSCCEEEEEECSSTTCEEEEEECC
T ss_pred             CceEEEEEEcC---CHHHHHHHHHHHh-CCCceeecCcccCCCCeEEEEEECCCCCeeEEEEECC
Confidence            56789999997   3456888999999 99998543  445556778999999999 99998753

>1qto_A Bleomycin-binding protein; arm-exchange, antibiotic inhibitor; 1.50A {Streptomyces verticillus} SCOP: d.32.1.2 PDB: 1jie_A* 1jif_A

Probab=98.85  E-value=7.3e-09  Score=61.73  Aligned_cols=51  Identities=12%  Similarity=0.038  Sum_probs=40.7

Q ss_pred             eeeEEEecChhhccccHHHHHHHHHHc------Cc--eEEee--eeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            7 LQFFSFGMSEAESLQFLSFGCFLLVEK------GI--QTFQR--SLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~------GI--~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..|++|.++      .++++.++|+++      |+  ++...  ..|++  +++++.|||||.|||..+
T Consensus        61 ~~~~~~~v~------dvd~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~g--~~~~~~DPdG~~iel~~~  121 (122)
T 1qto_A           61 NTSAWIEVT------DPDALHEEWARAVSTDYADTSGPAMTPVGESPAG--REFAVRDPAGNCVHFTAG  121 (122)
T ss_dssp             TCEEEEEES------CHHHHHHHHTTTSCSCTTCTTSCEECCCEEETTE--EEEEEECTTSCEEEEEEC
T ss_pred             ceEEEEEEC------CHHHHHHHHHhhccccccCccccccCCCcCCCCC--cEEEEECCCCCEEEEecC
Confidence            358888775      588999999999      99  76443  33444  899999999999999864

>1xrk_A Bleomycin resistance protein; arm exchange, ligand binding protein, thermostable mutant, antibiotic inhibitor; HET: BLM; 1.50A {Streptoalloteichus hindustanus} SCOP: d.32.1.2 PDB: 2zhp_A* 1byl_A

Probab=98.84  E-value=6.5e-09  Score=62.11  Aligned_cols=53  Identities=15%  Similarity=0.049  Sum_probs=41.5

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHc------Cc--eEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEK------GI--QTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~------GI--~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ...|++|.++      .++++.++|+++      |+  ++...  ..|++  +.+|+.|||||.|||....
T Consensus        60 ~~~~~~~~v~------dv~~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~g--~~~~~~DPdG~~iel~~~~  122 (124)
T 1xrk_A           60 DNTQAWVWVR------GLDELYAEWSEVVSTNFRDASGPAMTEIVEQPWG--REFALRDPAGNCVHFVAEE  122 (124)
T ss_dssp             GGCEEEEEEE------CHHHHHHHHTTTSBSCTTTCSSCEECCCEEETTE--EEEEEECTTCCEEEEEEC-
T ss_pred             CceEEEEEEC------CHHHHHHHHHHhcccccCCccccccCCceecCCC--CEEEEECCCCCEEEEEEec
Confidence            3458888775      589999999999      99  76432  33444  9999999999999998754

>1lgt_A Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxygenase, 2,3-dihydroxybiphenyl, non-heme iron, anaerobic, PCB biodegradation; HET: BP3; 1.70A {Burkholderia xenovorans} SCOP: d.32.1.3 d.32.1.3 PDB: 1kmy_A* 1knd_A 1knf_A 1han_A* 1lkd_A*

Probab=98.81  E-value=2.6e-08  Score=66.99  Aligned_cols=58  Identities=14%  Similarity=0.159  Sum_probs=45.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +.+.|++|.++   .+..+.++.++ +++|+++...  ..+.+..+++||+|||||.|||....
T Consensus       205 ~~~~hiaf~v~---d~~~~~~~~~~-~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~  264 (297)
T 1lgt_A          205 KRIHHFMLEVA---SLDDVGFAFDR-VDADGLITSTLGRHTNDHMVSFYASTPSGVEVEYGWSA  264 (297)
T ss_dssp             SSEEEEEEEBS---CHHHHHHHHHH-HHTTTCEEEEEEEESSSCCEEEEEECTTSCEEEEEECC
T ss_pred             CCceEEEEeCC---CHHHHHHHHHH-HhCCCcccccCcccCCCCcEEEEEECCCCcEEEEecCC
Confidence            45789999987   24456667799 9999999654  34556677899999999999998753

>3lm4_A Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein structure initiative, 2hydroxyl 6 OXO 6 phenyl hexa 2-4 dienoic acid, peroxide; HET: HPX; 1.80A {Rhodococcus jostii}

Probab=98.77  E-value=2.6e-08  Score=69.33  Aligned_cols=58  Identities=17%  Similarity=0.122  Sum_probs=47.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..+.|++|.++   +...|+++.++|+++|+++...+...+..+.++|.|||||.|||...
T Consensus        66 ~g~~~~af~v~---~~~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~f~DPdG~~iel~~~  123 (339)
T 3lm4_A           66 AGMGHAAMRTS---SPEALERRAKSLTDGNVDGTWSEDQFGYGKTFEYQSPDGHNLQLLWE  123 (339)
T ss_dssp             CEEEEEEEEES---SHHHHHHHHHHHHHTTCCEEEECCSTTBCCEEEEECTTCCEEEEECC
T ss_pred             CCcceEEEEeC---CHHHHHHHHHHHHHCCCceeeccCCCCceEEEEEECCCCCEEEEEEe
Confidence            35789999988   23459999999999999997654434556899999999999999864

>1f1u_A Homoprotocatechuate 2,3-dioxygenase; extradiol, manganese, biodegradation, aromatic, oxidoreductase; 1.50A {Arthrobacter globiformis} SCOP: d.32.1.3 d.32.1.3 PDB: 1f1r_A 1f1v_A* 1f1x_A

Probab=98.77  E-value=3.5e-08  Score=67.87  Aligned_cols=57  Identities=14%  Similarity=0.226  Sum_probs=45.1

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCc--eEEe-e-eeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGI--QTFQ-R-SLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI--~~~~-~-~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .+.|++|.++   .+..+..+.++|+++|+  ++.. . ....++.+++|++|||||.||+...
T Consensus       211 ~~~Hiaf~v~---d~d~v~~~~~~l~~~G~~~~i~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~  271 (323)
T 1f1u_A          211 RMHHVAFATH---EKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDGHRIEIYTQ  271 (323)
T ss_dssp             EEEEEEEECS---SHHHHHHHHHHHHHTTCGGGEEEEEEECSTTCCEEEEEECTTCCEEEEEEC
T ss_pred             CceEEEEECC---CHHHHHHHHHHHHHCCCccccccCCCccCCCCcEEEEEECCCCCEEEEEeC
Confidence            5789999987   34556679999999999  8863 2 2244566889999999999999753

>3b59_A Glyoxalase/bleomycin resistance protein/dioxygena; 11004Z, NYSGXRC, PSI-2, structural genomics, Pro structure initiative; 2.53A {Novosphingobium aromaticivorans}

Probab=98.75  E-value=3.6e-08  Score=67.64  Aligned_cols=57  Identities=25%  Similarity=0.275  Sum_probs=45.6

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .+.|++|.++   .+..+.++.++|+++|+++...+  .+.+..+.+|++|||||.||+...
T Consensus       195 g~~hi~f~v~---d~d~~~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~  253 (310)
T 3b59_A          195 CLNHVAYDML---SVDDMMRGAHRLKVKGIDIGWGPGRHTAGNNTFSYFVTPGGFVTEYTSE  253 (310)
T ss_dssp             EEEEEEEECS---SHHHHHHHHHHHHHTTCCCSEEEEECSTTCCEEEEEECTTSCEEEEEEC
T ss_pred             ceEEEEEEcC---CHHHHHHHHHHHHHcCCceeecCccccCCCcEEEEEECCCCCEEEEEeC
Confidence            4789999997   24557778999999999985432  244566899999999999999864

>1kw3_B 2,3-dihydroxybiphenyl dioxygenase; four TIME repetitions of the beta-alpha-beta-BETA-beta motif oxidoreductase; 1.45A {Pseudomonas SP} SCOP: d.32.1.3 d.32.1.3 PDB: 1dhy_A 1eiq_A 1eir_A* 1eil_A 1kw6_B* 1kw8_B* 1kw9_B* 1kwb_B 1kwc_B*

Probab=98.74  E-value=1.5e-08  Score=68.03  Aligned_cols=59  Identities=15%  Similarity=0.097  Sum_probs=46.8

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC----CCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP----DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p----~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..+.|++|.++   +...++++.++|+++|+++...+..    ....+.++|.|||||.|||....
T Consensus        57 ~~~~~~~f~v~---~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~  119 (292)
T 1kw3_B           57 DDLAYAGLEVD---DAAALERMADKLRQAGVAFTRGDEALMQQRKVMGLLCLQDPFGLPLEIYYGP  119 (292)
T ss_dssp             CEEEEEEEECS---SHHHHHHHHHHHHHHTCCCEECCHHHHHHHTCSEEEEEECTTSCEEEEEECC
T ss_pred             CCccEEEEEEC---CHHHHHHHHHHHHHcCCeEeecCcccccccCceEEEEEECCCCCEEEEEECc
Confidence            45789999995   2456999999999999998764431    23458899999999999998754

>2ehz_A 1,2-dihydroxynaphthalene dioxygenase; extradiol dioxygenase, protein substrate complex, oxidoreduc; 1.35A {Pseudomonas SP} PDB: 2ei0_A* 2ei1_A* 2ei3_A* 2ei2_A

Probab=98.72  E-value=1.5e-08  Score=68.67  Aligned_cols=58  Identities=14%  Similarity=0.091  Sum_probs=46.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--C--CCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--P--DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p--~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..+.|++|.++   ....++++.++|+++|+++...+.  +  .+..+.+||.|||||.|||...
T Consensus        63 ~~~~~~~~~v~---~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~  124 (302)
T 2ehz_A           63 DDLEYLGWRVA---GKPEFEALGQKLIDAGYKIRICDKVEAQERMVLGLMKTEDPGGNPTEIFWG  124 (302)
T ss_dssp             SEEEEEEEEES---SHHHHHHHHHHHHHTTCCCEECCHHHHHHHTEEEEEEEECTTSCEEEEEEE
T ss_pred             CCeeEEEEEEC---CHHHHHHHHHHHHHCCCcEEECCccccccccceEEEEEECCCCCEEEEEEC
Confidence            35789999985   245699999999999999865432  1  1346889999999999999875

>2zyq_A Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; extradiol, DHSA, TB, catechol, cholesterol, steroid, aromatic hydrocarbons catabolism; HET: TAR; 2.00A {Mycobacterium tuberculosis} PDB: 2zi8_A*

Probab=98.70  E-value=1.9e-08  Score=67.68  Aligned_cols=58  Identities=21%  Similarity=0.079  Sum_probs=46.1

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC----CCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP----DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p----~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..+.|++|.++   ....++++.++|+++|+++...+..    ....+.+||.|||||.|||...
T Consensus        59 ~~~~~~~~~v~---~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~  120 (300)
T 2zyq_A           59 DRLLEAGWECA---NAEGLQEIRNRLDLEGTPYKEATAAELADRRVDEMIRFADPSGNCLEVFHG  120 (300)
T ss_dssp             CEEEEEEEECS---SHHHHHHHHHHHHHHTCCCEECCHHHHHHHTCSEEEEEECTTCCEEEEEEC
T ss_pred             CCcceEEEEeC---CHHHHHHHHHHHHHcCCeEEeCChhhcccccceEEEEEECCCCCEEEEEEc
Confidence            45779999996   2456999999999999998654321    1445889999999999999976

>1lgt_A Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxygenase, 2,3-dihydroxybiphenyl, non-heme iron, anaerobic, PCB biodegradation; HET: BP3; 1.70A {Burkholderia xenovorans} SCOP: d.32.1.3 d.32.1.3 PDB: 1kmy_A* 1knd_A 1knf_A 1han_A* 1lkd_A*

Probab=98.69  E-value=2.5e-08  Score=67.07  Aligned_cols=59  Identities=22%  Similarity=0.206  Sum_probs=46.8

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC----CCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP----DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p----~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..+.|++|.++   +...++++.++|+++|+++...+..    ....+.+||.|||||.|||....
T Consensus        57 ~~~~~~~f~v~---~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~  119 (297)
T 1lgt_A           57 DDLAFAGYEVA---DAAGLAQMADKLKQAGIAVTTGDASLARRRGVTGLITFADPFGLPLEIYYGA  119 (297)
T ss_dssp             CEEEEEEEEES---SHHHHHHHHHHHHHTTCCCEECCHHHHHHHTCSEEEEEECTTSCEEEEEECC
T ss_pred             CCccEEEEEeC---CHHHHHHHHHHHHHCCCeEEeCCccccccCCceeEEEEECCCCCEEEEEECc
Confidence            45789999986   2456999999999999998654321    14568999999999999998754

>3pkv_A Toxoflavin lyase (TFLA); metalloenzyme, vicinal oxygen chelate superfamily; 1.34A {Paenibacillus polymyxa} PDB: 3pkw_A 3pkx_A* 3oul_A 3oum_A*

Probab=98.69  E-value=3.2e-08  Score=67.80  Aligned_cols=56  Identities=18%  Similarity=0.220  Sum_probs=45.4

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEe--e----eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ--R----SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~--~----~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.|++|.++.    ..|+++.++|+++ +++..  .    .....+.+.+||.|||||.|||....
T Consensus        80 ~~~hiaf~V~~----~dld~~~~rL~~~-v~~~~~~~~~~~~~~~~g~~~~~f~DPdGn~iEl~~~~  141 (252)
T 3pkv_A           80 PFYHIAINIAA----NHFQEGKAWLSGF-GELLTENDEDQAYFPFFNAYSCYVEDPSGNIIELISRQ  141 (252)
T ss_dssp             CCCEEEEEECT----TCHHHHHHHHTTS-SCCCCBTTBSCEEETTTTEEEEEEECTTCCEEEEEEES
T ss_pred             CeeEEEEEecH----HHHHHHHHHHHhc-ceEeccCCccccccccCCeEEEEEECCCCCEEEEEEeC
Confidence            47899999993    3499999999999 99854  1    11345679999999999999999764

>2wl9_A Catechol 2,3-dioxygenase; aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.90A {Rhodococcus SP} PDB: 2wl3_A

Probab=98.69  E-value=3.7e-08  Score=66.75  Aligned_cols=58  Identities=21%  Similarity=0.135  Sum_probs=46.7

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC----CCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP----DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p----~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..+.|++|.++   +...++++.++|+++|+++...+..    .+..+.+||.|||||.|||...
T Consensus        60 ~~~~~~~f~v~---~~~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~~~DPdG~~iel~~~  121 (305)
T 2wl9_A           60 DDLAYIGWRVA---GPVELDELAEQLKNAGIPFEVASDADAAERRVLGLVKLHDPGGNPTEIFYG  121 (305)
T ss_dssp             CEEEEEEEECS---SHHHHHHHHHHHHHTTCCCEECCHHHHHHTTEEEEEEEECTTCCEEEEEEE
T ss_pred             CCeEEEEEEEC---CHHHHHHHHHHHHHCCCceEeCCcccccccCcEEEEEEECCCCCEEEEEEC
Confidence            45789999996   2446999999999999998754332    2457899999999999999876

>1mpy_A Catechol 2,3-dioxygenase; extradiol dioxygenase, non heme iron dioxygenase, metapyrocatechase, oxidoreductase; 2.80A {Pseudomonas putida} SCOP: d.32.1.3 d.32.1.3

Probab=98.66  E-value=4.7e-08  Score=65.99  Aligned_cols=58  Identities=19%  Similarity=0.171  Sum_probs=45.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC--CCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP--DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p--~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .++.|++|.++   +...++++.++|+++|+++...+.+  ....+.++|.|||||.|||...
T Consensus        63 ~~~~~~~f~v~---~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~  122 (307)
T 1mpy_A           63 PGMDFMGFKVV---DEDALRQLERDLMAYGCAVEQLPAGELNSCGRRVRFQAPSGHHFELYAD  122 (307)
T ss_dssp             CEEEEEEEEES---CHHHHHHHHHHHHHHTCCCEEECTTSSTTBCCEEEEECTTSCEEEEESC
T ss_pred             CCcceEEEEeC---CHHHHHHHHHHHHHcCCceecCCcccCCCceEEEEEECCCCCEEEEEEc
Confidence            35789999985   2346999999999999999765431  2345889999999999999874

>2zw5_A Bleomycin acetyltransferase; dimer, two domains; HET: COA; 2.40A {Streptomyces verticillus} PDB: 2zw4_A* 2zw6_A 2zw7_A*

Probab=98.66  E-value=6.8e-08  Score=63.94  Aligned_cols=44  Identities=14%  Similarity=0.042  Sum_probs=36.6

Q ss_pred             cHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEeee
Q 036856           22 FLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus        22 ~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .++++.++|+++|+.+...+... -+.+..+|.|||||.|||..+
T Consensus       256 dvd~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~  300 (301)
T 2zw5_A          256 TADSLHRRAVDAGARVDGPPVRRPWGRSEFVITLPEGHELTVSAP  300 (301)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             cHHHHHHHHHHcCCccccCcccCCCcceEEEEECCCCCEEEeeCC
Confidence            69999999999999996554433 256899999999999999875

>4ghg_A Homoprotocatechuate 2,3-dioxygenase; oxygen activation, Fe(II), 2-His-1-carboxylate triad, 4-nitrocatechol, OXY complex, oxidoreductase; HET: P6G PG4 DHY; 1.50A {Brevibacterium fuscum} PDB: 1q0o_A 1q0c_A 2iga_A* 2ig9_A 3ojj_A* 3bza_A* 3ojk_A* 3ojt_A* 3ojn_A* 4ghh_A* 4ghc_A 4ghd_A* 4ghe_A* 4ghf_A* 3eck_A* 3ecj_A*

Probab=98.57  E-value=1.4e-07  Score=67.40  Aligned_cols=58  Identities=19%  Similarity=0.095  Sum_probs=46.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC--CCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP--DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p--~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..+.|++|.++.   -..|+++.++|+++|+++......  .+..+.++|.|||||.|||...
T Consensus        72 ~gl~~~a~~v~s---~~dLd~~~~~L~~~Gv~v~~~~~~~~~~~g~~~~f~DPdG~~iEl~~~  131 (365)
T 4ghg_A           72 AALKAMAFRVRT---PEDVDKAEAYYQELGCRTERRKDGFVKGIGDALRVEDPLGFPYEFFFE  131 (365)
T ss_dssp             CEEEEEEEEESS---HHHHHHHHHHHHHTTCCEEEETTCSSTTBCSEEEEECTTSCEEEEECC
T ss_pred             CCcceEEEEeCC---HHHHHHHHHHHHHcCCcceeccccccCCCceEEEEECCCCCEEEEEEE
Confidence            468999999972   345899999999999999764332  2345789999999999999854

>3oxh_A RV0577 protein; kinase regulation, antibiotic resistance, mycobacterium tube structural genomics, PSI, protein structure initiative; HET: PMB XYL; 1.75A {Mycobacterium tuberculosis}

Probab=98.57  E-value=3.4e-07  Score=62.33  Aligned_cols=54  Identities=15%  Similarity=0.117  Sum_probs=42.4

Q ss_pred             eeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeecC
Q 036856            7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      --|++|.++      .++++.++|+++|+++...  ..|+ +.+.+|+.|||||.|||..+..
T Consensus       225 ~~~~~~~v~------dvd~~~~~~~~~G~~~~~~p~~~~~-~~~~~~~~DPdGn~~~l~~~~~  280 (282)
T 3oxh_A          225 HWHVYFAVD------DADATAAKAAAAGGQVIAEPADIPS-VGRFAVLSDPQGAIFSVLKAAP  280 (282)
T ss_dssp             EEEEEEECS------CHHHHHHHHHHTTCEEEEEEEEETT-TEEEEEEECTTSCEEEEEEEC-
T ss_pred             eEEEEEEeC------CHHHHHHHHHHcCCEEecCCeEcCC-CeEEEEEECCCCCEEEEEecCC
Confidence            346777665      5999999999999999553  3343 4689999999999999998653

>4ghg_A Homoprotocatechuate 2,3-dioxygenase; oxygen activation, Fe(II), 2-His-1-carboxylate triad, 4-nitrocatechol, OXY complex, oxidoreductase; HET: P6G PG4 DHY; 1.50A {Brevibacterium fuscum} PDB: 1q0o_A 1q0c_A 2iga_A* 2ig9_A 3ojj_A* 3bza_A* 3ojk_A* 3ojt_A* 3ojn_A* 4ghh_A* 4ghc_A 4ghd_A* 4ghe_A* 4ghf_A* 3eck_A* 3ecj_A*

Probab=98.54  E-value=4e-07  Score=64.98  Aligned_cols=59  Identities=14%  Similarity=0.164  Sum_probs=46.7

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEe----eeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ----RSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~----~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .+++-|+||.++   .+..+..+.++|+++|+....    .....++..++||+||+||.||+...
T Consensus       209 ~~~lhHvaf~v~---d~d~v~~~~d~l~~~g~~~~i~~GpgRH~~~~~~f~Y~~dP~G~~iE~~t~  271 (365)
T 4ghg_A          209 GPRLHHVAFSTH---EKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDNHRIEIYTQ  271 (365)
T ss_dssp             BSEEEEEEEECS---SHHHHHHHHHHHHHTTCGGGEEEEEEECSTTCCEEEEEECTTCCEEEEEEC
T ss_pred             CCceeEEEEecC---CHHHHHHHHHHHHhCCCCceeEeCCCccCCCCcEEEEEECCCCceEEEEcC
Confidence            457899999997   356788889999999986521    23345667889999999999999764

>3b59_A Glyoxalase/bleomycin resistance protein/dioxygena; 11004Z, NYSGXRC, PSI-2, structural genomics, Pro structure initiative; 2.53A {Novosphingobium aromaticivorans}

Probab=98.50  E-value=2.1e-07  Score=63.73  Aligned_cols=59  Identities=19%  Similarity=0.152  Sum_probs=46.3

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC---CCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP---DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p---~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..+.|++|.++   +...|+++.++|+++|+++...+.+   ..+.+.++|.|||||.|||....
T Consensus        63 ~~~~~~~~~v~---~~~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~  124 (310)
T 3b59_A           63 NRIDVIALAAD---SRSDVDALRASVEAAGCKVASEPAVLATPGGGYGFRFFSPDGLLFEVSSDV  124 (310)
T ss_dssp             CEEEEEEEEES---SHHHHHHHHHHHHHHTCCBCCCSEECCSTTCCEEEEEECTTSCEEEEEECC
T ss_pred             CCeeEEEEEeC---CHHHHHHHHHHHHhCCCeEeecCccccccCCceEEEEECCCCCEEEEEEcc
Confidence            35789999984   2456999999999999998654432   23568899999999999998654

>1f1u_A Homoprotocatechuate 2,3-dioxygenase; extradiol, manganese, biodegradation, aromatic, oxidoreductase; 1.50A {Arthrobacter globiformis} SCOP: d.32.1.3 d.32.1.3 PDB: 1f1r_A 1f1v_A* 1f1x_A

Probab=98.49  E-value=3.6e-07  Score=62.79  Aligned_cols=58  Identities=19%  Similarity=0.113  Sum_probs=45.6

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC--CCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP--DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p--~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.|++|.++.   -..|+++.++|+++|+++.....+  ....+.++|.|||||.|||....
T Consensus        73 ~~~~~~f~v~~---~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DP~G~~iel~~~~  132 (323)
T 1f1u_A           73 AVAAFAYRVKS---PAEVDAAEAYYKELGCRTERRKEGFTKGIGDSVRVEDPLGFPYEFFYET  132 (323)
T ss_dssp             EEEEEEEEESS---HHHHHHHHHHHHHTTCCEEEETTCSSTTBCSEEEEECTTSCEEEEECCB
T ss_pred             CeeEEEEEeCC---HHHHHHHHHHHHhCCCcEEeccccccCCcceEEEEECCCCCEEEEEEec
Confidence            47799999862   345999999999999999765431  13358899999999999998653

>3oxh_A RV0577 protein; kinase regulation, antibiotic resistance, mycobacterium tube structural genomics, PSI, protein structure initiative; HET: PMB XYL; 1.75A {Mycobacterium tuberculosis}

Probab=98.33  E-value=1.5e-06  Score=59.08  Aligned_cols=54  Identities=13%  Similarity=0.063  Sum_probs=41.6

Q ss_pred             eeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEeeec
Q 036856            7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      --+++|.++      .++++.++|+++|+++...+... ...+.++|.|||||.|||....
T Consensus        97 ~~~~~~~v~------d~d~~~~~l~~~G~~~~~~p~~~~~~g~~~~~~DP~G~~i~l~~~~  151 (282)
T 3oxh_A           97 IWNTYIAVD------DVDAVVDKVVPGGGQVMMPAFDIGDAGRMSFITDPTGAAVGLWQAN  151 (282)
T ss_dssp             EEEEEEECS------CHHHHHTTTTTTTCEEEEEEEEETTTEEEEEEECTTCCEEEEEEES
T ss_pred             cEEEEEEeC------CHHHHHHHHHHCCCEEEECCEecCCCeEEEEEECCCCCEEEEEEcc
Confidence            345666655      59999999999999996543322 2348899999999999998764

>3zi1_A Glyoxalase domain-containing protein 4; isomerase; 1.90A {Homo sapiens}

Probab=98.27  E-value=9.4e-07  Score=61.57  Aligned_cols=47  Identities=9%  Similarity=-0.044  Sum_probs=37.5

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.|++|.++.         ..++|+++|+++....   .  +.+||.|||||.|||....
T Consensus       107 g~~hiaf~V~d---------~~~~l~~~G~~~~~~~---~--~~~~~~DPdG~~iel~~~~  153 (330)
T 3zi1_A          107 DFMGITLASSQ---------AVSNARKLEWPLTEVA---E--GVFETEAPGGYKFYLQNRS  153 (330)
T ss_dssp             SEEEEEEECHH---------HHHHHHHHTCCCEEEE---T--TEEEEECTTSCEEEEESSC
T ss_pred             CeeEEEEECch---------HHHHHHHcCCceeccC---C--ceEEEECCCCCEEEEEecC
Confidence            46899998873         2678899999997543   2  4899999999999998753

>1xy7_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G48480, reductively methylated protein, CATH 3.10.180 fold; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.9 PDB: 2q48_A

Probab=98.23  E-value=2.4e-06  Score=54.27  Aligned_cols=49  Identities=16%  Similarity=-0.006  Sum_probs=37.9

Q ss_pred             eEEEecChhhccccHHHHHHHHHHcCceEEeee--e--CCCCeeEEEEeCCCCCeEEEeeec
Q 036856            9 FFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--L--PDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         9 ~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~--p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      |++|.++      .++++.++|+++|.. ....  .  |+  .+..+|.||+||.|+|+...
T Consensus       104 ~l~~~vd------Dvda~~~~l~~~G~~-~~~~~~~~~~~--~r~~~v~DP~G~~~~l~~~~  156 (166)
T 1xy7_A          104 TFLLGTK------DAEAAVAKAVDAGAV-KVEVTEAEVEL--GFKGKVTDPFGVTWIFAEKK  156 (166)
T ss_dssp             EEEEECS------CHHHHHHHHHHTTCE-ECCCCHHHHHT--TEEEEEECTTSCEEEEEC--
T ss_pred             EEEEEcC------CHHHHHHHHHHCCCE-ECCcccccCcc--cEEEEEECCCCCEEEEEeec
Confidence            6667665      499999999999998 4432  3  44  58999999999999998754

>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis}

Probab=98.02  E-value=6.3e-06  Score=57.38  Aligned_cols=55  Identities=13%  Similarity=0.128  Sum_probs=42.3

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-----------CC-C------eeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-----------DG-K------VKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-----------~~-~------~~QiF~~DPDGn~IEL~f~   65 (68)
                      +.++|+||.++      .+++++++|+++|+++...+..           .+ .      ...+++.||||+.|||...
T Consensus       237 ~g~~Hiaf~v~------Di~~~~~~L~~~Gv~~~~~p~~yy~~~~~r~~~~~~~~~~~~~~~~l~~~Dp~G~llqi~t~  309 (357)
T 2r5v_A          237 AGVQHIAFNSN------DAVRAVKALSERGVEFLKTPGAYYDLLGERITLQTHSLDDLRATNVLADEDHGGQLFQIFTA  309 (357)
T ss_dssp             SEEEEEEEECS------CHHHHHHHHHHTTCCBCCCCHHHHHTTTTTCCCSSSCHHHHHHHTCEEEEETTEEEEEEEBC
T ss_pred             CCccEEEEEcC------CHHHHHHHHHHcCCCcCCCchhHHHHHHHhhccchhhHHHHHHcCeEEecCCCceEEEEEcc
Confidence            47899999988      4889999999999998553210           00 0      1369999999999999874

>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=98.00  E-value=3e-05  Score=47.31  Aligned_cols=42  Identities=10%  Similarity=-0.066  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEeeec
Q 036856           23 LSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus        23 l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ++++.++|+ .|..+.....  |++ .+..++.||+||.|+|+.+.
T Consensus        92 vd~~~~~l~-~Gg~v~~p~~~~~~G-~~~~~~~Dp~G~~w~l~~~~  135 (136)
T 1u7i_A           92 IERLAEALS-DGGKALMPLGDYGFS-QRFAWLADRFGVSWQLNLAG  135 (136)
T ss_dssp             HHHHHHHHH-TTSEEEEEEECCSSS-SEEEEEECTTSCEEEEEECC
T ss_pred             HHHHHHHHH-cCCEEecccccCCCc-ceEEEEECCCCCEEEEEecC
Confidence            999999999 8988865443  444 47789999999999999764

>1u6l_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.81A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=97.84  E-value=8.6e-05  Score=46.16  Aligned_cols=53  Identities=15%  Similarity=-0.071  Sum_probs=37.9

Q ss_pred             eEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            9 FFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         9 ~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +++|.++   ..+.++++.++|+ .|..+...  ..|++ .+..+|.||+||.|+|+...
T Consensus        83 ~l~~~v~---d~~evd~~~~~l~-~Gg~i~~p~~~~~wG-~r~~~v~Dp~G~~w~l~~~~  137 (149)
T 1u6l_A           83 SISLNVD---SKAEAERLFNALA-EGGSVQMPLGPTFWA-ASFGMFTDRFGVAWMVNCEQ  137 (149)
T ss_dssp             EEEEECS---SHHHHHHHHHHHH-TTSEEEEEEEEETTE-EEEEEEECTTSCEEEEEESC
T ss_pred             EEEEEcC---CHHHHHHHHHHHH-CCCEEeecccccCcc-cceEEEECCCCCEEEEEEec
Confidence            4556555   2334889999996 67777443  34543 47889999999999998754

>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron, oxidoreductase; HET: NTD; 2.50A {Streptomyces avermitilis} SCOP: d.32.1.3 d.32.1.3

Probab=97.73  E-value=0.00016  Score=51.27  Aligned_cols=55  Identities=9%  Similarity=0.074  Sum_probs=44.8

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC---C-CCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP---D-GKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p---~-~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .++.|+||.++      .++++.++|+++|+++...+..   . +..+..++.||+|+.++|...
T Consensus        98 ~gv~~iaf~V~------D~~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~~pgg~~~~lv~~  156 (381)
T 1t47_A           98 DGVVDLAIEVP------DARAAHAYAIEHGARSVAEPYELKDEHGTVVLAAIATYGKTRHTLVDR  156 (381)
T ss_dssp             SEEEEEEEECS------CHHHHHHHHHHTTCCEEEEEEEEEETTEEEEEEEEECSTTCEEEEEEE
T ss_pred             CceEEEEEEEC------CHHHHHHHHHHcCCEEeeccccccCCCCeEEEEEEecCCCcEEEEEec
Confidence            47889999998      3799999999999999654431   2 345788999999999999864

>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis}

Probab=97.58  E-value=0.0004  Score=48.19  Aligned_cols=55  Identities=9%  Similarity=-0.016  Sum_probs=44.6

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .++.|++|.++      .++++.++|+++|+++...+.  ..+..+..++.||+|..++|...
T Consensus        73 ~g~~~iaf~V~------D~~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~~p~g~~~~lv~~  129 (357)
T 2r5v_A           73 DGVADIAMATS------DVAAAYEAAVRAGAEAVRAPGQHSEAAVTTATIGGFGDVVHTLIQR  129 (357)
T ss_dssp             SEEEEEEEEES------CHHHHHHHHHHTTCCEEEEEECCC-CCCCEEEEECSTTCEEEEEEC
T ss_pred             CeEEEEEEEEC------CHHHHHHHHHHcCCeEeECcEecCCCeEEEEEEeccCCeEEEEEec
Confidence            46889999998      477999999999999965543  23556788999999999999764

>3l20_A Putative uncharacterized protein; hypothetical protein, unknown function; 2.45A {Staphylococcus aureus}

Probab=97.43  E-value=0.00054  Score=44.99  Aligned_cols=44  Identities=14%  Similarity=-0.086  Sum_probs=35.2

Q ss_pred             ccHHHHHHHHHHcC-ceEEeee--eCCCCeeEEEEeCCCCCeEEEeee
Q 036856           21 QFLSFGCFLLVEKG-IQTFQRS--LPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus        21 ~~l~~~~~~L~~~G-I~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..++++.++|++.| +.+....  .|++ .+..++.||+||.|+|+..
T Consensus       119 ~dvd~~~~~l~~~G~a~v~~p~~~~~wG-~r~g~v~DpfG~~W~i~~~  165 (172)
T 3l20_A          119 DKVEAFYEQIKDHSSIEIELPFADQFWG-GKMGVFTDKYGVRWMLHGQ  165 (172)
T ss_dssp             HHHHHHHHHHTTCTTCEEEEEEEECTTS-SEEEEEECTTSCEEEEEEE
T ss_pred             HHHHHHHHHHHhCCCceEecCccccCCC-cEEEEEECCCCCEEEEEeC
Confidence            56999999999999 6775433  3444 4788999999999999864

>1tsj_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, nysgxrc; 2.60A {Staphylococcus aureus subsp} SCOP: d.32.1.7

Probab=97.32  E-value=0.00058  Score=42.63  Aligned_cols=44  Identities=11%  Similarity=-0.056  Sum_probs=34.3

Q ss_pred             ccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856           21 QFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus        21 ~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..++++.++|+ .|.++...  ..|++ .+..+++||+||.|+|+...
T Consensus        84 ~evd~~~~~l~-~G~~v~~p~~~~~wG-~~~g~v~Dp~G~~W~i~~~~  129 (139)
T 1tsj_A           84 IEMERLFNGLK-DEGAILMPKTNMPPY-REFAWVQDKFGVSFQLALPE  129 (139)
T ss_dssp             HHHHHHHHHHH-TTCEEEEEEEEETTE-EEEEEEECTTSCEEEEEECC
T ss_pred             HHHHHHHHHHh-CCCEEeecccccCCC-ceEEEEECCCCCEEEEeecc
Confidence            44888899999 68887543  44554 48899999999999999754

>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}

Probab=96.93  E-value=0.00032  Score=56.58  Aligned_cols=51  Identities=25%  Similarity=0.219  Sum_probs=41.3

Q ss_pred             eeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEeeec
Q 036856            8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .|++|-++      .|+++.+.|.+.+.+|+..  |. .+-.++|..||+||.|+|....
T Consensus        96 ~~l~f~~~------dL~~~~~~L~~~~~~~Q~~--ps~~~~~e~yt~DPlGNvIgfs~~~  147 (941)
T 3opy_B           96 SNIAFKSS------SLSKLVKLLKDGGHPVQQS--PNEISPFEVYTVDPLGSLIGFSGFK  147 (941)
T ss_dssp             CEEEEEES------CHHHHHHHHHTTTCCCBCS--SSSCSCEEECCSSCCEEEECC-CCS
T ss_pred             ceEEEEeC------CHHHHHHHHHhcCCccccC--CCcCCCceEEeECCCCCEEEEeccC
Confidence            48888776      6889999999999999865  44 3558999999999999997543

>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron, oxidoreductase; HET: NTD; 2.50A {Streptomyces avermitilis} SCOP: d.32.1.3 d.32.1.3

Probab=96.88  E-value=0.0011  Score=46.94  Aligned_cols=55  Identities=15%  Similarity=0.102  Sum_probs=39.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCC------------------eeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGK------------------VKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~------------------~~QiF~~DPDGn~IEL~f~   65 (68)
                      +.++|+||.++      .+.+++++|+++|+++...+...-.                  ..=++-.||||..+++...
T Consensus       266 ~Gv~HiAf~vd------Di~~~~~~L~~~Gv~~~~~p~~Yy~~l~~R~~~~~~~~~~l~~~~il~d~d~~g~llqift~  338 (381)
T 1t47_A          266 AGVQHIALNTG------DIVETVRTMRAAGVQFLDTPDSYYDTLGEWVGDTRVPVDTLRELKILADRDEDGYLLQIFTK  338 (381)
T ss_dssp             CEEEEEEEECS------CHHHHHHHHHHTTCCBCCCCGGGTTSHHHHHCCCSSCHHHHHHHTCEEEECSSCEEEEEEBC
T ss_pred             CCcceEEEecC------CHHHHHHHHHHcCCccCCCCccHHHHHHHhccccchhHHHHHHhCeEEeeCCCCeEEEEecc
Confidence            46899999987      5899999999999998653211100                  1126778888888887543

>1sqd_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.3 d.32.1.3 PDB: 1tfz_A* 1tg5_A* 1sp9_A

Probab=96.82  E-value=0.0047  Score=44.94  Aligned_cols=55  Identities=9%  Similarity=-0.106  Sum_probs=41.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +.+.|+||.++      .++++.++|+++|+++...+. .....+-.++++|+|+.++|..+
T Consensus       116 ~gv~~iAf~Vd------Dvdaa~~~l~a~Ga~~~~~P~~~~~~~~~~~i~~~Gg~~~~lvd~  171 (424)
T 1sqd_A          116 LGVRAVAIEVE------DAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSY  171 (424)
T ss_dssp             SEEEEEEEEES------CHHHHHHHHHHTTCCEEEEEEEETTTEEEEEEEEETTEEEEEEEE
T ss_pred             CeEEEEEEEeC------CHHHHHHHHHHcCCEEeecCcCCCCceEEEEEEcCCCcEEEEEec
Confidence            56899999997      489999999999999854332 22445666777888888887654

>3oms_A PHNB protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, methyltransferase, GL family; 1.90A {Bacillus cereus} SCOP: d.32.1.0

Probab=96.71  E-value=0.0049  Score=38.50  Aligned_cols=42  Identities=14%  Similarity=0.019  Sum_probs=32.0

Q ss_pred             cHHHHHHHHHHcCceEEe--eeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856           22 FLSFGCFLLVEKGIQTFQ--RSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus        22 ~l~~~~~~L~~~GI~~~~--~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .++++.++|++ |-.+..  ...|++ .+...+.||+|+.|.|+..
T Consensus        94 evd~~~~~l~~-Gg~v~~p~~~~~wg-~~~~~~~Dp~G~~W~i~~~  137 (138)
T 3oms_A           94 EIDTVFHKLAQ-DGAILMPLGSYPFS-KKFGWLNDKYGVSWQLTLA  137 (138)
T ss_dssp             HHHHHHHHHHT-TCEEEEEEEEETTE-EEEEEEECTTSCEEEEEEC
T ss_pred             HHHHHHHHHHc-CCeEecCcccccCC-cEEEEEECCCCCEEEEEeC
Confidence            48999999975 556643  344554 4788999999999999874

>1cjx_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase, iron; 2.40A {Pseudomonas fluorescens} SCOP: d.32.1.3 d.32.1.3

Probab=96.50  E-value=0.003  Score=44.07  Aligned_cols=55  Identities=15%  Similarity=0.001  Sum_probs=41.4

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .++.|+||.++      .++++.++|+++|+++...+...+...-..+.+|+|..++|..+
T Consensus        75 ~gv~~iaf~V~------D~~~~~~~l~~~G~~~~~~~~~~g~~~~~~~~~~gg~~~~~vd~  129 (357)
T 1cjx_A           75 PSVCGMAFRVK------DSQKAYNRALELGAQPIHIDTGPMELNLPAIKGIGGAPLYLIDR  129 (357)
T ss_dssp             SEEEEEEEEES------CHHHHHHHHHHTTCCBCCCCCCTTCBCCCEEECGGGCEEEEECC
T ss_pred             CeEEEEEEEeC------CHHHHHHHHHHcCCEEeecCCCCCcEEEEeeeCCCCeEEEEECC
Confidence            47899999997      37899999999999985543222334556788888888888643

>1cjx_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase, iron; 2.40A {Pseudomonas fluorescens} SCOP: d.32.1.3 d.32.1.3

Probab=96.50  E-value=0.0017  Score=45.35  Aligned_cols=55  Identities=18%  Similarity=0.072  Sum_probs=39.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEe-ee----------eCCCCee--------EEEEeC----CCCCeEE
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ-RS----------LPDGKVK--------QVFFFD----PDGNGLE   61 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~-~~----------~p~~~~~--------QiF~~D----PDGn~IE   61 (68)
                      +.++|+||.++      .+++++++|+++|+++.. .+          .+..+..        -++..|    |||+.|+
T Consensus       236 ~g~~HiAf~v~------Di~~~~~~L~~~Gv~~~~~~p~~Yy~~l~~r~~~~~~~~~~l~~~~il~d~d~~~~~~g~llq  309 (357)
T 1cjx_A          236 EGIQHVAFLTD------DLVKTWDALKKIGMRFMTAPPDTYYEMLEGRLPDHGEPVDQLQARGILLDGSSVEGDKRLLLQ  309 (357)
T ss_dssp             SBCCEEEEEES------CHHHHHHHHHHTTCCBCCCCCHHHHHTHHHHSTTCCCCHHHHHHHTCEEEEEEETTEEEEEEE
T ss_pred             CCeeEEEEEcC------CHHHHHHHHHHcCCcccCCCChHHHHHHHHHhccccccHHHHHHcCeEEecCCCCCCCCeEEE
Confidence            45899999987      478999999999999855 22          0111111        267788    8888888


Q ss_pred             Eeee
Q 036856           62 VASR   65 (68)
Q Consensus        62 L~f~   65 (68)
                      +...
T Consensus       310 ift~  313 (357)
T 1cjx_A          310 IFSE  313 (357)
T ss_dssp             EEBC
T ss_pred             Eecc
Confidence            8654

>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD, structural GE protein structure initiative; 2.30A {Streptococcus pneumoniae}

Probab=96.48  E-value=0.0067  Score=42.39  Aligned_cols=52  Identities=4%  Similarity=-0.142  Sum_probs=32.9

Q ss_pred             eeeE---EEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            7 LQFF---SFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         7 ~~~~---~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +-|+   ++.+|   .-+.|+..+++    +.++.......- ...+|+.||+||.||++...
T Consensus        71 lkh~a~i~i~vp---~~~el~~lL~~----~~~~~~~~~gdh-gyA~yl~dPEGn~ieiyae~  125 (244)
T 3e0r_A           71 RKKLARLIVKVE---NPLEIEGILSK----TDSIHRLYKGQN-GYAFEIFSPEDDLILIHAED  125 (244)
T ss_dssp             SCSEEEEEEEES---SHHHHHHHHTT----CSCCSEEEECSS-SEEEEEECTTCCEEEEECCS
T ss_pred             cceeeeEEEEcC---CHHHHHHHHhc----ccccccccccCC-cEEEEEECCCCCeEEEEEcC
Confidence            3466   58888   23345555555    655533222222 34699999999999998654

>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3

Probab=95.69  E-value=0.03  Score=40.62  Aligned_cols=55  Identities=7%  Similarity=-0.159  Sum_probs=39.8

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .++.|+||.++      .++++.++|+++|+++...+. +.+..+--++.+|+|..++|..+
T Consensus       116 ~gv~~iAf~V~------Dv~~a~~~l~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~lvd~  171 (418)
T 1sp8_A          116 LAVRAVALRVA------DAEDAFRASVAAGARPAFGPVDLGRGFRLAEVELYGDVVLRYVSY  171 (418)
T ss_dssp             SEEEEEEEEES------CHHHHHHHHHTTTCCEEEEEEEEETTEEEEEEEEETTEEEEEEEC
T ss_pred             CeeEEEEEEeC------CHHHHHHHHHHCCCEEEeccccccCceEEEEEecCCCEEEEEEcc
Confidence            46899999997      499999999999999855432 22334555666777777776543

>3isq_A 4-hydroxyphenylpyruvate dioxygenase; tyrosine metabolism, DIS mutation, iron, mental retardation, metal-binding, oxidored phenylalanine catabolism; 1.75A {Homo sapiens} PDB: 1sqi_A*

Probab=93.40  E-value=0.27  Score=35.68  Aligned_cols=54  Identities=15%  Similarity=0.171  Sum_probs=42.1

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CC--CCeeEEEEeCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PD--GKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~--~~~~QiF~~DPDGn~IEL~f   64 (68)
                      .++.|+||.++      .++++.++++++|+.....+.  +.  +..+-.-+++|.|+.+-|..
T Consensus        84 ~Gv~~iAf~Vd------Dvdaa~~ra~a~Ga~~v~eP~~~~~~~G~v~~a~I~~~Gd~~h~lVd  141 (393)
T 3isq_A           84 DGVKDIAFEVE------DCDYIVQKARERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLVE  141 (393)
T ss_dssp             SEEEEEEEEEE------CHHHHHHHHHHHTCCEEEEEEEEEETTEEEEEEEEECSTTCEEEEEE
T ss_pred             CcEEEEEEEeC------CHHHHHHHHHHCCCeEecCccccccCCceeEEEEEEeCCCcEEEEec
Confidence            46899999987      589999999999999854332  22  34677889999888887764

>3isq_A 4-hydroxyphenylpyruvate dioxygenase; tyrosine metabolism, DIS mutation, iron, mental retardation, metal-binding, oxidored phenylalanine catabolism; 1.75A {Homo sapiens} PDB: 1sqi_A*

Probab=91.45  E-value=0.15  Score=37.06  Aligned_cols=28  Identities=14%  Similarity=0.185  Sum_probs=24.8

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ   39 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~   39 (68)
                      .++|+||.++      ++.+++++|+++|+++..
T Consensus       256 Gi~HiA~~~d------Di~~~~~~l~~~Gv~~l~  283 (393)
T 3isq_A          256 GVQHIALKTE------DIITAIRHLRERGLEFLS  283 (393)
T ss_dssp             EEEEEEEEES------CHHHHHHHHHHTTCCBCC
T ss_pred             CcceEEEEcC------CHHHHHHHHHHcCCccCC
Confidence            3999999988      699999999999999854

>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A

Probab=90.73  E-value=1.4  Score=25.04  Aligned_cols=55  Identities=11%  Similarity=0.076  Sum_probs=40.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..|.|+++.++      .++++++.....|.+....  ..+..+.+..|+.. +|..|||..+.
T Consensus         6 ~~i~hv~i~v~------Dl~~a~~FY~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~   62 (133)
T 3hdp_A            6 LKVHHIGYAVK------NIDSALKKFKRLGYVEESEVVRDEVRKVYIQFVIN-GGYRVELVAPD   62 (133)
T ss_dssp             CCEEEEEEECS------CHHHHHHHHHHTTCEECSCCEEETTTTEEEEEEEE-TTEEEEEEEES
T ss_pred             eeeCEEEEEEC------CHHHHHHHHHHcCCeeecceeccCCcceEEEEEeC-CCEEEEEEecC
Confidence            35889999887      5889999998789887443  34666667777776 67789987653

>1ss4_A Glyoxalase family protein; structural genomics, PSI, prote structure initiative, midwest center for structural genomic unknown function; HET: CIT GSH; 1.84A {Bacillus cereus} SCOP: d.32.1.6

Probab=90.27  E-value=1.6  Score=25.11  Aligned_cols=55  Identities=18%  Similarity=0.179  Sum_probs=40.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee------------CCCCeeEEEEeCCCC-CeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL------------PDGKVKQVFFFDPDG-NGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~------------p~~~~~QiF~~DPDG-n~IEL~f~   65 (68)
                      ..|.|+++.++      .++++++..++.|.+......            +..+.+..|+.-++| ..|||...
T Consensus        10 ~~i~hv~l~v~------D~~~a~~FY~~lG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~l~l~~~   77 (153)
T 1ss4_A           10 LRMDNVSIVVE------SLDNAISFFEEIGLNLEGRANVEGEWAGRVTGLGSQCVEIAMMVTPDGHSRIELSRF   77 (153)
T ss_dssp             EEEEEEEEECS------CHHHHHHHHHHHTCEEEEEEEECSHHHHHHHSCCSCEEEEEEEECTTSSCEEEEEEE
T ss_pred             cceeeEEEEeC------CHHHHHHHHHHCCCEEEeeccCCcchhheeeCCCCCcEEEEEEECCCCCcEEEEEEe
Confidence            35788888776      588888888888998864432            224567788888877 78888753

>3rmu_A Methylmalonyl-COA epimerase, mitochondrial; structural genomics consortium, SGC, vitamin B12, mitochondr isomerase; HET: PG4; 1.80A {Homo sapiens} SCOP: d.32.1.0

Probab=88.89  E-value=1.9  Score=23.93  Aligned_cols=54  Identities=20%  Similarity=0.249  Sum_probs=39.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHH-cCceEEee-eeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..|.|+++.++      .++++.+..++ .|.+.... ..|..+.+..|+.. +|..|||...
T Consensus         4 ~~i~hv~l~v~------D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~   59 (134)
T 3rmu_A            4 GRLNHVAIAVP------DLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNL-GNTKMELLHP   59 (134)
T ss_dssp             EEEEEEEEECS------CHHHHHHHHHHTSCCEECCCEEEGGGTEEEEEEEC-SSSEEEEEEE
T ss_pred             ceeeeEEEEeC------CHHHHHHHHHHhcCCEEeEeeecCCCCEEEEEEec-CCEEEEEEec
Confidence            46889998887      68899999988 79988543 34455666677766 5678888764

>3oa4_A Glyoxalase, BH1468 protein; structural genomics, protein structure initiative, glyoxalas PSI-biology, lyase; 1.94A {Bacillus halodurans}

Probab=88.85  E-value=2.5  Score=25.29  Aligned_cols=56  Identities=14%  Similarity=0.138  Sum_probs=42.2

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHH-cCceEEee-eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ...|.|+++.++      .++++++..++ .|.+.... ..+..+.+.+|+.. +|..|||....
T Consensus         6 ~~~i~Hv~l~V~------Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-g~~~l~l~~~~   63 (161)
T 3oa4_A            6 SNKLDHIGIAVT------SIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEI-GESKIELLEPL   63 (161)
T ss_dssp             CCEEEEEEEECS------CHHHHHHHHHHTSCCEEEEEEEEGGGTEEEEEEEE-TTEEEEEEEES
T ss_pred             cCcCCEEEEEEC------CHHHHHHHHHHccCCeEeeeeccCCCCeEEEEEeC-CCeEEEEEeEC
Confidence            456899999887      68999999998 79988554 44556667777776 45778887653

>1jc4_A Methylmalonyl-COA epimerase; vicinal oxygen chelate superfamily, isomerase; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: d.32.1.4 PDB: 1jc5_A

Probab=88.01  E-value=2.5  Score=24.17  Aligned_cols=56  Identities=11%  Similarity=0.127  Sum_probs=42.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHH-cCceEEee-eeCCCCeeEEEEeCCCC-----CeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQR-SLPDGKVKQVFFFDPDG-----NGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~-~~p~~~~~QiF~~DPDG-----n~IEL~f~~   66 (68)
                      ..+.|+++.++      .++++.+..++ .|.+.... ..+..+.+.+++..+++     ..|+|....
T Consensus         8 ~~~~hv~l~v~------D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~l~~~~   70 (148)
T 1jc4_A            8 ICIDHVAYACP------DADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAPL   70 (148)
T ss_dssp             SEEEEEEEECS------CHHHHHHHHHHHHCCEEEEEEEETTTTEEEEEEESSSSCCTTCCEEEEEEES
T ss_pred             ceeeEEEEEeC------CHHHHHHHHHHccCceeeecccCCCCCeEEEEEEcCCCCcCcceEEEEeecC
Confidence            46789888876      58889998875 79998654 34555667888888886     889988653

>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, structure initiative; 1.91A {Porphyromonas gingivalis} SCOP: d.360.1.1

Probab=86.50  E-value=1.2  Score=28.26  Aligned_cols=36  Identities=17%  Similarity=0.204  Sum_probs=31.1

Q ss_pred             cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCC
Q 036856           20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDP   55 (68)
Q Consensus        20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DP   55 (68)
                      -.....++++|+.+||+|...++|..+.--+||=+|
T Consensus        37 ~~~~~~~~~rL~~~~I~Y~iq~v~~~~kiNlFFG~~   72 (120)
T 2guk_A           37 NDDIPYAEERLRSRQIPYFAQPTPNTERTNLFFGCK   72 (120)
T ss_dssp             GGGHHHHHHHHHHTTCCEEEECCTTSSEEEEEEECH
T ss_pred             HhhHHHHHHHHHhCCCCEEEEEcCCCCeEEEEeCCH
Confidence            456788999999999999999998888788888665

>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}

Probab=84.49  E-value=3.6  Score=22.78  Aligned_cols=55  Identities=18%  Similarity=0.126  Sum_probs=40.6

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHH-cCceEEee-eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .|.|+++.++      .++++.+..++ .|.+.... ..|..+...+|+..++|..|+|....
T Consensus         3 ~i~hv~l~v~------D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~   59 (127)
T 3e5d_A            3 KIEHVALWTT------NLEQMKQFYVTYFGATANDLYENKTKGFNSYFLSFEDGARLEIMSRT   59 (127)
T ss_dssp             CCCEEEEECS------SHHHHHHHHHHHHCCEECCCEEEGGGTEEEEEEECSSSCEEEEEEET
T ss_pred             EEEEEEEEEC------CHHHHHHHHHHhcCCeeecccccCCCCccEEEEEcCCCcEEEEEecC
Confidence            4778888876      68888888855 59888543 33455667788888889999998653

>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3

Probab=83.95  E-value=0.76  Score=33.17  Aligned_cols=29  Identities=7%  Similarity=0.006  Sum_probs=25.4

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHH----cCceEEee
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVE----KGIQTFQR   40 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~----~GI~~~~~   40 (68)
                      .++|+||.++      ++.+++++|++    +|+++...
T Consensus       281 G~~HIAf~vd------DI~~a~~~L~~r~~~~Gv~~l~~  313 (418)
T 1sp8_A          281 GVQHMALASD------DVLRTLREMQARSAMGGFEFMAP  313 (418)
T ss_dssp             EEEEEEEEET------THHHHHHHHHTSGGGTSCCBCCC
T ss_pred             CcCEEEEEeC------CHHHHHHHHhhhhccCCeEEccC
Confidence            5899999988      69999999999    79999653

>1sqd_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.3 d.32.1.3 PDB: 1tfz_A* 1tg5_A* 1sp9_A

Probab=83.34  E-value=0.96  Score=32.70  Aligned_cols=28  Identities=11%  Similarity=-0.001  Sum_probs=24.5

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHH----cCceEEe
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVE----KGIQTFQ   39 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~----~GI~~~~   39 (68)
                      .++|+||.++      .+.+++++|++    +|+++..
T Consensus       284 G~~HIAf~vd------DI~~a~~~L~~r~~~~Gv~~l~  315 (424)
T 1sqd_A          284 GLQHLALMSE------DIFRTLREMRKRSSIGGFDFMP  315 (424)
T ss_dssp             EEEEEEEEES------CHHHHHHHHHHHGGGTSCCBCC
T ss_pred             CcCEEEEEeC------CHHHHHHHHHhhhccCCcEEec
Confidence            5899999987      69999999999    7999865

>3l7t_A SMU.1112C, putative uncharacterized protein; metal binding protein; 1.80A {Streptococcus mutans}

Probab=81.54  E-value=4.9  Score=22.13  Aligned_cols=53  Identities=13%  Similarity=0.076  Sum_probs=39.7

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHH-cCceEEee-eeCCCCeeEEEEeCCCCCeEEEee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      ..|.|+++.++      .++++.+...+ .|.+.... ..+..+.+.+++..++. .|+|..
T Consensus         4 ~~i~hv~l~v~------D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~l~l~~   58 (134)
T 3l7t_A            4 KAVHHVALIVS------DYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDI-ELEIFG   58 (134)
T ss_dssp             CEEEEEEEECS------CHHHHHHHHHHTSCCEEEEEEEETTTTEEEEEEEETTE-EEEEEE
T ss_pred             eeEeEEEEEeC------CHHHHHHHHHHhcCCEEEEEeecCCCcceEEEEecCCe-EEEEEe
Confidence            46889998887      68899999976 79998554 44556666777777654 888876

>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}

Probab=80.66  E-value=5.2  Score=21.90  Aligned_cols=54  Identities=13%  Similarity=0.092  Sum_probs=38.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHH-cCceEEee-eeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..+.|+++.++      .++++.+..++ .|.+.... ..+..+.+.+++.-+++ .|+|...
T Consensus         4 ~~i~hi~l~v~------d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~l~l~~~   59 (126)
T 2p25_A            4 KEIHHVAINAS------NYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQ-ELEIFIS   59 (126)
T ss_dssp             SCCCCEEEEES------CHHHHHHHHTTTTCCEEEEEEEEGGGTEEEEEEEETTE-EEEEEEC
T ss_pred             cccceEEEEeC------CHHHHHHHHHHhcCCEEEeeccCCCCcceEEEEecCCe-EEEEEec
Confidence            35788888766      68899999987 79998653 33444445566666666 8888753

>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD, structural GE protein structure initiative; 2.30A {Streptococcus pneumoniae}

Probab=80.19  E-value=5.5  Score=27.59  Aligned_cols=49  Identities=12%  Similarity=-0.077  Sum_probs=36.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      .-+.+|.|.++    =..+++..++|+++|.-+     + -..+.+.+.||.|+.|=+.
T Consensus       194 ~gLe~l~~~v~----~~dl~~l~~~L~~~g~~i-----d-kk~~~l~~~DpsgIeiwF~  242 (244)
T 3e0r_A          194 WDLSMLKFLVN----ELDIASLRQKFESTEYFI-----P-KSEKFFLGKDRNNVELWFE  242 (244)
T ss_dssp             SSEEEEEEEES----SCCHHHHHHHTTTSCEEC-----C-TTCCEEEEECTTSCEEEEE
T ss_pred             cCceEEEEEeC----HHHHHHHHHHHHhCCceE-----c-ccCCEEEEECCCCCEEEEE
Confidence            44678888886    445999999999987722     2 3347789999999877553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	68
d1r9ca_	130	d.32.1.2 (A:) Fosfomycin resistance protein FosX {	6e-04
d1qipa_	176	d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lya	0.001
d1zswa1	144	d.32.1.10 (A:1-144) Hypothetical protein BC1024 {B	0.002
d1f9za_	135	d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lya	0.002
d1xqaa_	113	d.32.1.2 (A:) Hypothetical protein BC3580 {Bacillu	0.002
d1nkia_	134	d.32.1.2 (A:) Fosfomycin resistance protein A (Fos	0.003
d2c21a1	139	d.32.1.1 (A:3-141) Glyoxalase I (lactoylglutathion	0.003

>d1r9ca_ d.32.1.2 (A:) Fosfomycin resistance protein FosX {Mesorhizobium loti [TaxId: 381]} Length = 130

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein FosX
species: Mesorhizobium loti [TaxId: 381]

 Score = 33.4 bits (75), Expect = 6e-04
 Identities = 7/45 (15%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 21  QFLSFGCFLLVEKGIQTFQ-RSLPDGKVKQVFFFDPDGNGLEVAS 64
                    + + G+     R   +G+ + ++F+D D +  E+ +
Sbjct: 77  ADFDRYAERVGKLGLDMRPPRPRVEGEGRSIYFYDDDNHMFELHT 121

>d1qipa_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Human (Homo sapiens) [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (73), Expect = 0.001
 Identities = 9/46 (19%), Positives = 18/46 (39%)

Query: 17  AESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEV 62
             ++  +   C    E G++  ++          F  DPDG  +E+
Sbjct: 121 GIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEI 166

>d1zswa1 d.32.1.10 (A:1-144) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]} Length = 144

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: BC1024-like
domain: Hypothetical protein BC1024
species: Bacillus cereus [TaxId: 1396]

 Score = 32.3 bits (72), Expect = 0.002
 Identities = 5/36 (13%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 33  KGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRRDE 68
             ++  + +    +   + F D +G  L +     E
Sbjct: 101 FDVKHSEMTTYANR-PALQFEDAEGLRLVLLVSNGE 135

>d1f9za_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Escherichia coli [TaxId: 562]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Escherichia coli [TaxId: 562]

 Score = 32.0 bits (71), Expect = 0.002
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 19  SLQFLSFGCFLLVEKGIQTFQ--RSLPDGKVKQVFFFDPDGNGLEVASRRD 67
           S+   +  C  + + G    +    +  G     F  DPDG  +E+   +D
Sbjct: 78  SVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 128

>d1xqaa_ d.32.1.2 (A:) Hypothetical protein BC3580 {Bacillus cereus [TaxId: 1396]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Hypothetical protein BC3580
species: Bacillus cereus [TaxId: 1396]

 Score = 31.6 bits (70), Expect = 0.002
 Identities = 4/20 (20%), Positives = 6/20 (30%)

Query: 43  PDGKVKQVFFFDPDGNGLEV 62
                   +   P G  +EV
Sbjct: 92  KHAHAYTFYVEAPGGFTIEV 111

>d1nkia_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein A (FosA)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 31.8 bits (71), Expect = 0.003
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 30  LVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS 64
           L   G++ +++     +    +F DPDG+ LE   
Sbjct: 81  LRAHGVREWKQ--NRSEGDSFYFLDPDGHRLEAHV 113

>d2c21a1 d.32.1.1 (A:3-141) Glyoxalase I (lactoylglutathione lyase) {Leishmania major [TaxId: 5664]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Leishmania major [TaxId: 5664]

 Score = 31.6 bits (70), Expect = 0.003
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 43  PDGKVKQVFFFDPDGNGLEVASRRD 67
            D      F  DPDG  +E+ + + 
Sbjct: 100 EDESGFMAFVVDPDGYYIELLNEKT 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	68
d1zswa1	144	Hypothetical protein BC1024 {Bacillus cereus [TaxI	99.39
d1npba_	140	Fosfomycin resistance protein A (FosA) {Serratia m	99.35
d1r9ca_	130	Fosfomycin resistance protein FosX {Mesorhizobium	99.34
d1zswa2	170	Hypothetical protein BC1024 {Bacillus cereus [TaxI	99.28
d1ss4a_	149	Hypothetical protein BC1747 {Bacillus cereus (stra	99.26
d1twua_	137	Hypothetical protein YycE {Bacillus subtilis [TaxI	99.26
d1xqaa_	113	Hypothetical protein BC3580 {Bacillus cereus [TaxI	99.24
d1mpya2	162	Catechol 2,3-dioxygenase (metapyrocatechase) {Pseu	99.23
d1nkia_	134	Fosfomycin resistance protein A (FosA) {Pseudomona	99.23
d1qipa_	176	Glyoxalase I (lactoylglutathione lyase) {Human (Ho	99.22
d1klla_	128	Mitomycin resistance protein D, MRD {Streptomyces	99.21
d1f1ua1	146	Homoprotocatechuate 2,3-dioxygenase {Arthrobacter	99.13
d1lgta1	131	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	99.13
d1f9za_	135	Glyoxalase I (lactoylglutathione lyase) {Escherich	99.13
d1mpya1	145	Catechol 2,3-dioxygenase (metapyrocatechase) {Pseu	99.1
d2pjsa1	111	Uncharacterized protein Atu1953 {Agrobacterium tum	99.06
d2i7ra1	115	Hypotheical protein SP0731 {Streptococcus pneumoni	99.02
d1kw3b1	132	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	98.99
d1jc4a_	145	Methylmalonyl-CoA epimerase {Propionibacterium she	98.99
d1kw3b2	156	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	98.97
d1f1ua2	176	Homoprotocatechuate 2,3-dioxygenase {Arthrobacter	98.93
d2c21a1	139	Glyoxalase I (lactoylglutathione lyase) {Leishmani	98.77
d1ecsa_	120	Bleomycin resistance protein, BRP {Klebsiella pneu	98.73
d1jifa_	122	Bleomycin resistance protein, BRP {Streptomyces ve	98.61
d1xrka_	120	Bleomycin resistance protein, BRP {Streptoalloteic	98.21
d1t47a1	163	4-hydroxyphenylpyruvate dioxygenase, HppD {Strepto	98.16
d1sqda1	167	4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-e	98.11
d1sqia1	149	4-hydroxyphenylpyruvate dioxygenase, HppD {Human (	98.0
d1sp8a1	172	4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Z	97.96
d1xy7a_	135	Hypothetical protein At5g48480 {Thale cress (Arabi	97.88
d1u6la_	137	Hypothetical protein PA1353 {Pseudomonas aeruginos	97.6
d1cjxa1	150	4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudom	97.34
d1t47a2	199	4-hydroxyphenylpyruvate dioxygenase, HppD {Strepto	96.55
d1cjxa2	203	4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudom	95.2
d1sqia2	210	4-hydroxyphenylpyruvate dioxygenase, HppD {Human (	94.34
d1u7ia_	134	Hypothetical protein PA1358 {Pseudomonas aeruginos	93.72
d1sp8a2	224	4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Z	92.19
d1tsja_	129	Hypothetical protein MW1090 {Staphylococcus aureus	89.71
d1sqda2	230	4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-e	89.63
d1zswa1	144	Hypothetical protein BC1024 {Bacillus cereus [TaxI	87.72
d2f9zc1	157	Chemoreceptor glutamine deamidase CheD {Thermotoga	83.88
d2guka1	111	Hypothetical protein PG1857 {Porphyromonas gingiva	81.6

>d1zswa1 d.32.1.10 (A:1-144) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: BC1024-like
domain: Hypothetical protein BC1024
species: Bacillus cereus [TaxId: 1396]

Probab=99.39  E-value=4.9e-13  Score=80.87  Aligned_cols=59  Identities=10%  Similarity=0.035  Sum_probs=48.5

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+++.|+||.++   ....|+++.++|+++|+++...... .+.+++||.|||||.|||..+.
T Consensus        75 ~~~~~Hiaf~v~---~~~~l~~~~~~l~~~gv~~~~~~~~-~~~~~~yf~DPdG~~iEl~~~~  133 (144)
T d1zswa1          75 TNAITRIGLLVP---SEDSLHYWKERFEKFDVKHSEMTTY-ANRPALQFEDAEGLRLVLLVSN  133 (144)
T ss_dssp             BSEEEEEEEEES---CHHHHHHHHHHHHHTTCEECCSEEE-TTEEEEEEECTTCCEEEEEECT
T ss_pred             CCceeEEEEecC---CchhHHHHhhhhhccceeeeCcccc-CCeEEEEEECCCCCEEEEEEeC
Confidence            367999999997   2456899999999999999664433 4568999999999999998654

>d1npba_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA) {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein A (FosA)
species: Serratia marcescens [TaxId: 615]

Probab=99.35  E-value=1.2e-12  Score=78.94  Aligned_cols=56  Identities=18%  Similarity=0.362  Sum_probs=47.1

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .++..|++|.++    ...++++.++|+++|+++...  |....+++||+|||||.|||+..
T Consensus        62 ~~~~~h~~~~~~----~~d~~~~~~~l~~~Gv~~~~~--~~~~~~~~~~~DPdGn~iEi~~~  117 (140)
T d1npba_          62 ESDYTHYAFTVA----EEDFEPLSQRLEQAGVTIWKQ--NKSEGASFYFLDPDGHKLELHVG  117 (140)
T ss_dssp             GSCSCEEEEECC----HHHHHHHHHHHHHTTCCEEEC--CCSSSEEEEEECTTCCEEEEEEC
T ss_pred             CCccceeeeech----HHHHHHHHHHHHHCCCeEeec--CCCCceEEEEECCCCCEEEEEEC
Confidence            356889999998    556999999999999999654  44556899999999999999764

>d1r9ca_ d.32.1.2 (A:) Fosfomycin resistance protein FosX {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein FosX
species: Mesorhizobium loti [TaxId: 381]

Probab=99.34  E-value=6.8e-13  Score=78.84  Aligned_cols=58  Identities=16%  Similarity=0.249  Sum_probs=45.3

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEe-eeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ-RSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~-~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..+..|++|.++    -..++++.++|+++|+++.. +..+.++.+.+||.|||||.|||...
T Consensus        64 ~~~~~~~~f~v~----~~dv~~~~~~l~~~gv~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~  122 (130)
T d1r9ca_          64 ERSYNHIAFKID----DADFDRYAERVGKLGLDMRPPRPRVEGEGRSIYFYDDDNHMFELHTG  122 (130)
T ss_dssp             SCCSCEEEEECC----GGGHHHHHHHHHHHTCCBCCCCC-----CCEEEEECTTSCEEEEECC
T ss_pred             ccceeeeeeccc----HHHHHHHHHHHHHCCCeEecCCcccCCCEEEEEEECCCCCEEEEEEC
Confidence            356889999998    45699999999999999954 34455667889999999999999754

>d1zswa2 d.32.1.10 (A:145-314) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: BC1024-like
domain: Hypothetical protein BC1024
species: Bacillus cereus [TaxId: 1396]

Probab=99.28  E-value=4.2e-12  Score=80.39  Aligned_cols=58  Identities=16%  Similarity=0.215  Sum_probs=48.1

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .+++.|+||.++   +...++++.++|+++|+++.... .....+.+||+|||||.|||...
T Consensus        73 ~~~l~HiAf~V~---~~~~l~~~~~~l~~~G~~~~~~~-~~~~~~s~Yf~DPdG~~iEl~t~  130 (170)
T d1zswa2          73 RGSIHHLAIRVK---NDAELAYWEEQVKQRGFHSSGII-DRFYFKSLYFRESNGILFEIATD  130 (170)
T ss_dssp             BTCEEEEEEEES---SHHHHHHHHHHHHHTTCCCCCCE-ECSSEEEEEEECTTCCEEEEEEE
T ss_pred             ccccceEEEEeC---ChHHHHHHHHHHHhcCCCccccc-cCCCEEEEEEECCCCcEEEEEEC
Confidence            356889999996   24569999999999999996533 44667899999999999999875

>d1ss4a_ d.32.1.6 (A:) Hypothetical protein BC1747 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein BC1747
domain: Hypothetical protein BC1747
species: Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]

Probab=99.26  E-value=6.6e-12  Score=75.21  Aligned_cols=55  Identities=9%  Similarity=0.023  Sum_probs=45.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEE-eeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTF-QRSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~-~~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..+.|++|.++      .++++.++|+++|+++. ++.....+.+.+|++|||||.|||...
T Consensus        92 ~g~~hi~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~e~  147 (149)
T d1ss4a_          92 LGYLRVMFTVE------DIDEMVSRLTKHGAELVGEVVQYENSYRLCYIRGVEGILIGLAEE  147 (149)
T ss_dssp             BEEEEEEEEES------CHHHHHHHHHHTTCEESSCCEEETTTEEEEEEECGGGCEEEEEEE
T ss_pred             cceeEEEEeec------hhHHHHHHHHHCCCeEccCCeECCCCeEEEEEECCCCCEEEEEEc
Confidence            34789999887      58999999999999984 444445778899999999999999864

>d1twua_ d.32.1.8 (A:) Hypothetical protein YycE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein YycE
domain: Hypothetical protein YycE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.26  E-value=1.3e-12  Score=79.01  Aligned_cols=58  Identities=19%  Similarity=0.082  Sum_probs=47.6

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +...|++|.++   ....+++++++|+++|+++.....|..+.+++||.||||+.|||+-.
T Consensus        74 ~~~~hlaf~v~---~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~f~DPDG~~Iel~~~  131 (137)
T d1twua_          74 HPDSLLVFYVP---NAVELAAITSKLKHMGYQEVESENPYWSNGGVTIEDPDGWRIVFMNS  131 (137)
T ss_dssp             CTTCEEEEECC---CHHHHHHHHHHHHHTTCCEECCSSHHHHSSEEEEECTTCCEEEEESS
T ss_pred             ccCceEEEEeC---CHHHHHHHHHHHHHCCCeEeCCCCCCCCceEEEEECCCCCEEEEEcC
Confidence            34679999886   35569999999999999997655555566899999999999999854

>d1xqaa_ d.32.1.2 (A:) Hypothetical protein BC3580 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Hypothetical protein BC3580
species: Bacillus cereus [TaxId: 1396]

Probab=99.24  E-value=5.4e-12  Score=72.90  Aligned_cols=56  Identities=16%  Similarity=0.055  Sum_probs=44.9

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      .+...|++|.++   ....|+++.++|+++|+++...+.  .+.+++||+|||||.|||.+
T Consensus        58 ~~~~~h~~f~v~---~~~~v~~~~~~l~~~G~~~~~~~~--~~~~~~~~~DPdG~~iEi~c  113 (113)
T d1xqaa_          58 YPKTFHVGFPQE---SEEQVDKINQRLKEDGFLVEPPKH--AHAYTFYVEAPGGFTIEVMC  113 (113)
T ss_dssp             CCTTCCEEEECS---SHHHHHHHHHHHHHTTCCCCCCEE--C-CEEEEEEETTTEEEEEEC
T ss_pred             ccccceeeeeec---cccchhhhhhhHHHcCCccccCCC--CceEEEEEECCCCCEEEEEC
Confidence            345789999997   245689999999999999865443  44588999999999999964

>d1mpya2 d.32.1.3 (A:146-307) Catechol 2,3-dioxygenase (metapyrocatechase) {Pseudomonas putida, mt2 [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Catechol 2,3-dioxygenase (metapyrocatechase)
species: Pseudomonas putida, mt2 [TaxId: 303]

Probab=99.23  E-value=2e-11  Score=76.06  Aligned_cols=61  Identities=26%  Similarity=0.283  Sum_probs=49.6

Q ss_pred             cccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEeeec
Q 036856            3 EAGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      +.+.+.|++|.+.   +++.++++.++|+++|+++...+.  ..++.+++||+|||||.|||.+..
T Consensus        63 ~~~~~~h~~~~~~---~~~~~~~~~~~L~~~gv~~~~~p~~~~~g~~~~~y~~DPdGn~iEl~~~~  125 (162)
T d1mpya2          63 EKGRLHHVSFHLE---TWEDLLRAADLISMTDTSIDIGPTRHGLTHGKTIYFFDPSGNRNEVFCGG  125 (162)
T ss_dssp             SSSEEEEEEEECS---CHHHHHHHHHHHHHHTCCEEEEEEECSSTTCEEEEEECTTSCEEEEEECC
T ss_pred             CCCccceeEEEEe---eehhhhhHHHHHHHcCCccccCccccCCCCeEEEEEECCCCCEEEEEECC
Confidence            3456899999987   466788999999999999965433  346779999999999999998653

>d1nkia_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein A (FosA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.23  E-value=1.4e-11  Score=73.67  Aligned_cols=56  Identities=21%  Similarity=0.439  Sum_probs=46.5

Q ss_pred             cccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856            3 EAGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      ...+..|++|.++    ...++++.++|+++|+++...  +.+..+++||+|||||.|||..
T Consensus        58 ~~~~~~h~~~~~~----~~dl~~~~~~l~~~G~~~~~~--~~~~~~~~~f~DPdGn~iEl~~  113 (134)
T d1nkia_          58 PAADYTHYAFGIA----AADFARFAAQLRAHGVREWKQ--NRSEGDSFYFLDPDGHRLEAHV  113 (134)
T ss_dssp             CCSSSCEEEEEEC----HHHHHHHHHHHHHTTCCEEEC--CCSSSCEEEEECTTCCEEEEES
T ss_pred             cccccccchhccc----cchHHHHHHHHHHCCCcCccC--CCcceeEEEEECCCCCEEEEEE
Confidence            3456889999998    445999999999999998543  4455688999999999999975

>d1qipa_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1e-11  Score=77.23  Aligned_cols=55  Identities=16%  Similarity=0.253  Sum_probs=46.5

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      -+.|++|.++      .++++.++|+++|+++...+......+++||+|||||.|||.+..
T Consensus       116 g~~h~~~~~~------d~~~~~~~l~~~Gv~~~~~p~~g~~~~~~f~~DPdG~~IElvq~~  170 (176)
T d1qipa_         116 GFGHIGIAVP------DVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPN  170 (176)
T ss_dssp             BEEEEEEECS------CHHHHHHHHHHTTCEEEECTTSSSSTTCEEEECTTCCEEEEECTT
T ss_pred             ceeEEEeeHH------HHHHHHHHHHHCCCEEeeCCccCCceEEEEEECCCCCEEEEEeCC
Confidence            4577787765      699999999999999988776666678899999999999999764

>d1klla_ d.32.1.2 (A:) Mitomycin resistance protein D, MRD {Streptomyces lavendulae [TaxId: 1914]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Mitomycin resistance protein D, MRD
species: Streptomyces lavendulae [TaxId: 1914]

Probab=99.21  E-value=4.5e-11  Score=70.86  Aligned_cols=58  Identities=16%  Similarity=0.134  Sum_probs=46.4

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ...|++|.++   +...++++.++|+++|+++...+.. ..+.+.+||.|||||.|||..+-
T Consensus        69 ~~~~l~~~v~---~~~~l~~~~~~l~~~G~~~~~~p~~~~~G~~~~~~~DPdG~~iel~~p~  127 (128)
T d1klla_          69 HRFAIAFEFP---DTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKDPDGNVVDLFAPL  127 (128)
T ss_dssp             CSCEEEEECS---SHHHHHHHHHHHHHTTCEEEEEEEECTTSEEEEEEECTTSCEEEEEEEC
T ss_pred             cceeEeeeec---cchhhHHHHHHHHhccCccccCCeEcCCCcEEEEEECCCCCEEEEEecC
Confidence            4468999886   4667999999999999998554332 24578999999999999998763

>d1f1ua1 d.32.1.3 (A:2-147) Homoprotocatechuate 2,3-dioxygenase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Homoprotocatechuate 2,3-dioxygenase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.13  E-value=6.9e-11  Score=72.19  Aligned_cols=60  Identities=18%  Similarity=0.117  Sum_probs=48.0

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEeeec
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ...+.|++|.+..   .+.|+++.++|+++|+++.....  ..+..+++||+|||||.|||....
T Consensus        70 ~~~~~h~~~~~~~---~~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~  131 (146)
T d1f1ua1          70 IAAVAAFAYRVKS---PAEVDAAEAYYKELGCRTERRKEGFTKGIGDSVRVEDPLGFPYEFFYET  131 (146)
T ss_dssp             SCEEEEEEEEESS---HHHHHHHHHHHHHTTCCEEEETTCSSTTBCSEEEEECTTSCEEEEECCB
T ss_pred             CCCCceeeEeecc---chhHHHHHHHHHHcCCceeeccccccCCceEEEEEECCCCcEEEEEEec
Confidence            3567899999873   45799999999999999965433  334568999999999999998653

>d1lgta1 d.32.1.3 (A:2-132) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]

Probab=99.13  E-value=3.6e-11  Score=72.62  Aligned_cols=59  Identities=22%  Similarity=0.210  Sum_probs=47.2

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC----CCCeeEEEEeCCCCCeEEEeee
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP----DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p----~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ...+.|++|.++   +.+.|+++.++|+++|+++...+.+    .+..+.+||+|||||.|||.+.
T Consensus        56 ~~~~~h~~f~v~---~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~f~DPdGn~iE~~~~  118 (131)
T d1lgta1          56 VDDLAFAGYEVA---DAAGLAQMADKLKQAGIAVTTGDASLARRRGVTGLITFADPFGLPLEIYYG  118 (131)
T ss_dssp             TCEEEEEEEEES---SHHHHHHHHHHHHHTTCCCEECCHHHHHHHTCSEEEEEECTTSCEEEEEEC
T ss_pred             CCCceEEEEEEc---cHHHHHHHHHHHHHcCCceEECCccccccCCceEEEEEECCCCCEEEEEeC
Confidence            356889999997   2456999999999999999764322    2455889999999999999764

>d1f9za_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=2.2e-10  Score=66.34  Aligned_cols=55  Identities=16%  Similarity=0.312  Sum_probs=44.0

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.|.++.++      .++.+.+++++.|+.+...  ..+.++.+++||+|||||.|||.++.
T Consensus        71 ~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~q~~  127 (135)
T d1f9za_          71 AYGHIALSVD------NAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK  127 (135)
T ss_dssp             SEEEEEEECS------CHHHHHHHHHHTTCEEEEEEEECTTSCCEEEEEECTTSCEEEEEEC-
T ss_pred             cceeeccchH------HHHHHHHHHHHcCCCeecCCccccCCCeEEEEEECCCCCEEEEEECC
Confidence            4567777666      5788899999999888553  45667889999999999999999764

>d1mpya1 d.32.1.3 (A:1-145) Catechol 2,3-dioxygenase (metapyrocatechase) {Pseudomonas putida, mt2 [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Catechol 2,3-dioxygenase (metapyrocatechase)
species: Pseudomonas putida, mt2 [TaxId: 303]

Probab=99.10  E-value=9.5e-11  Score=70.56  Aligned_cols=58  Identities=19%  Similarity=0.174  Sum_probs=45.4

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC--CCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD--GKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~--~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .+..|++|.+.   ..+.|+++.++|+++|+++...+...  +..+++||+|||||.|||...
T Consensus        63 ~~~~~~~~~~~---~~~dl~~~~~~L~~~g~~~~~~~~~~~~g~~~~~~f~DPdG~~iEl~~~  122 (145)
T d1mpya1          63 PGMDFMGFKVV---DEDALRQLERDLMAYGCAVEQLPAGELNSCGRRVRFQAPSGHHFELYAD  122 (145)
T ss_dssp             CEEEEEEEEES---CHHHHHHHHHHHHHHTCCCEEECTTSSTTBCCEEEEECTTSCEEEEESC
T ss_pred             ccceeeeeeeh---hHHHHHHHHHHHHHCCCcEEECCCcccCCceEEEEEECCCCCEEEEEEe
Confidence            45677887755   35679999999999999997654332  334899999999999999754

>d2pjsa1 d.32.1.2 (A:3-113) Uncharacterized protein Atu1953 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Uncharacterized protein Atu1953
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.06  E-value=3.7e-10  Score=64.42  Aligned_cols=51  Identities=14%  Similarity=0.135  Sum_probs=39.4

Q ss_pred             eeeEEEecChhhccccHHHHHHHHHHcCceEE-eeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856            7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTF-QRSLPDGKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus         7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~-~~~~p~~~~~QiF~~DPDGn~IEL~   63 (68)
                      ..|++|.++      .++++.++|+++|+++. .......+.+.+|++|||||.||+.
T Consensus        60 ~~~~~~~~~------dvd~~~~~l~~~g~~~~~~p~~~~~g~~~~~~~DP~Gn~iei~  111 (111)
T d2pjsa1          60 VPDLSIEVD------NFDEVHARILKAGLPIEYGPVTEAWGVQRLFLRDPFGKLINIL  111 (111)
T ss_dssp             CCSEEEEES------CHHHHHHHHHHTTCCCSEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             eeEEEEEec------CHHHHHHHHHhhccccccCCeEcCCCcEEEEEECCCCCEEEeC
Confidence            346666554      69999999999999984 3333334668999999999999984

>d2i7ra1 d.32.1.2 (A:1-115) Hypotheical protein SP0731 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Hypotheical protein SP0731
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.02  E-value=4.5e-10  Score=66.19  Aligned_cols=50  Identities=14%  Similarity=0.122  Sum_probs=39.7

Q ss_pred             eEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEee
Q 036856            9 FFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus         9 ~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~f   64 (68)
                      +++|.++      .++++.++|+++|+++...+... .+.+.++|+|||||.|||.+
T Consensus        63 ~~~f~v~------D~d~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~DPdGn~ie~~~  113 (115)
T d2i7ra1          63 IIHIEVE------DVDQNYKRLNELGIKVLHGPTVTDWGTESLLVQGPAGLVLDFYR  113 (115)
T ss_dssp             EEEEECS------CHHHHHHHHHHHTCCEEEEEEECTTSCEEEEEECGGGCEEEEEE
T ss_pred             EEEEEEC------CHHHHHHHHHhhccccccceEEeeCCeEEEEEECCCCCEEEEEE
Confidence            4666654      59999999999999996543322 35689999999999999976

>d1kw3b1 d.32.1.3 (B:1-132) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.99  E-value=3.3e-10  Score=68.49  Aligned_cols=59  Identities=15%  Similarity=0.074  Sum_probs=46.3

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC----CCeeEEEEeCCCCCeEEEeee
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD----GKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~----~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ...+.|++|.++   +.+.|+++.++|+++|+++...+...    ...+.+||.|||||.|||.+.
T Consensus        56 ~~~~~h~~f~v~---~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdGn~iE~~~~  118 (132)
T d1kw3b1          56 LDDLAYAGLEVD---DAAALERMADKLRQAGVAFTRGDEALMQQRKVMGLLCLQDPFGLPLEIYYG  118 (132)
T ss_dssp             TCEEEEEEEECS---SHHHHHHHHHHHHHHTCCCEECCHHHHHHHTCSEEEEEECTTSCEEEEEEC
T ss_pred             CCCceEEEEEec---cHHHHHHHHHHHHHcCCCceecCccccccCCcceEEEEECCCCCEEEEEEC
Confidence            356889999986   34569999999999999997643221    334679999999999999754

>d1jc4a_ d.32.1.4 (A:) Methylmalonyl-CoA epimerase {Propionibacterium shermanii [TaxId: 1752]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Methylmalonyl-CoA epimerase
domain: Methylmalonyl-CoA epimerase
species: Propionibacterium shermanii [TaxId: 1752]

Probab=98.99  E-value=3.9e-10  Score=66.63  Aligned_cols=57  Identities=16%  Similarity=0.202  Sum_probs=43.9

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEE-eeeeCC-CCeeEEEE--eCCCCCeEEEeeec
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTF-QRSLPD-GKVKQVFF--FDPDGNGLEVASRR   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~-~~~~p~-~~~~QiF~--~DPDGn~IEL~f~~   66 (68)
                      .+.+.|+||.++      .+++++++|+++|+++. +.+... .+.+..|+  .|||||.|||.+++
T Consensus        84 ~~g~~Hia~~v~------di~~~~~~l~~~Gv~~~~~~~~~~~~g~~~~f~~p~dp~G~~iEl~e~p  144 (145)
T d1jc4a_          84 RAGLHHMAWRVD------DIDAVSATLRERGVQLLYDEPKLGTGGNRINFMHPKSGKGVLIELTQYP  144 (145)
T ss_dssp             CCEEEEEEEECS------CHHHHHHHHHHHTCCBSCSSCEECSSSCEEEEBCGGGGTTSCEEEEECC
T ss_pred             CCcceEEEEecc------hHHHHHHHHHHCCCEEeCCCceECCCCCEEEEEeccCCCCeEEEEEECC
Confidence            356899999987      69999999999999983 333332 34444555  79999999999874

>d1kw3b2 d.32.1.3 (B:133-288) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.97  E-value=9.4e-10  Score=68.56  Aligned_cols=59  Identities=10%  Similarity=0.069  Sum_probs=48.0

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEee-eeCCCCeeEEEEeCCCCC-eEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SLPDGKVKQVFFFDPDGN-GLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~p~~~~~QiF~~DPDGn-~IEL~f~~   66 (68)
                      +.+.|+||.++   +++.+.++.++|+++|+++... ....+...++|+.||||| .+|+....
T Consensus        73 ~gl~Hiaf~v~---~~ddv~~~~d~l~~~G~~~~g~~rH~~~~~~s~Y~~DP~G~~~~E~~~~~  133 (156)
T d1kw3b2          73 KRIHHFMLQAN---TIDDVGYAFDRLDAAGRITSLLGRHTNDQTLSFYADTPSPMIEVEFGWGP  133 (156)
T ss_dssp             SSEEEEEEEBS---SHHHHHHHHHHHHHTTCBCBCSEEESSSCCEEEEEECSSTTCEEEEEECC
T ss_pred             CceeEEEEECC---CHHHHHHHHHHHHhcCCceecCcccCCCCeEEEEEECCCCCeEEEEecCC
Confidence            45899999997   4667999999999999987543 445567789999999998 59997643

>d1f1ua2 d.32.1.3 (A:148-323) Homoprotocatechuate 2,3-dioxygenase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Homoprotocatechuate 2,3-dioxygenase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.93  E-value=1.2e-09  Score=69.26  Aligned_cols=60  Identities=13%  Similarity=0.187  Sum_probs=46.9

Q ss_pred             ccceeeEEEecChhhccccHHHHHHHHHHcCceEEe----eeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ----RSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~----~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .+.+.|++|.+.   ....+..+.++|+++|+.+..    .....++..++||+|||||.|||....
T Consensus        62 ~~~~~H~~f~~~---~~~~v~~~~~~l~~~g~~~~~~~~p~~h~~g~~~~~Y~~DPdG~~iEl~~~~  125 (176)
T d1f1ua2          62 GPRMHHVAFATH---EKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDGHRIEIYTQD  125 (176)
T ss_dssp             BSEEEEEEEECS---SHHHHHHHHHHHHHTTCGGGEEEEEEECSTTCCEEEEEECTTCCEEEEEECC
T ss_pred             CCCccceeEEec---cchhHHHHHHHHHHcCCceeeeecccccCCCCceEEEEECCCCCEEEEEeCC
Confidence            356889999987   356788999999999997632    222346678999999999999998643

>d2c21a1 d.32.1.1 (A:3-141) Glyoxalase I (lactoylglutathione lyase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Leishmania major [TaxId: 5664]

Probab=98.77  E-value=2e-08  Score=57.68  Aligned_cols=43  Identities=16%  Similarity=0.124  Sum_probs=36.0

Q ss_pred             cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856           20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus        20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ...+..+.++|+..++++...   ..+.+++||+|||||.|||...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~DPdGn~iEl~~~  122 (139)
T d2c21a1          80 VEDVKELVADMRKHDVPIDYE---DESGFMAFVVDPDGYYIELLNE  122 (139)
T ss_dssp             ESCHHHHHHHHHHTTCCEEEE---CSSSSEEEEECTTSCEEEEEEH
T ss_pred             hhhHHHHHHHHHHcCCceeeC---CCCcEEEEEECCCCCEEEEEEC
Confidence            446788999999999998653   4677999999999999999864

>d1ecsa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.73  E-value=2e-08  Score=58.46  Aligned_cols=46  Identities=22%  Similarity=0.061  Sum_probs=35.6

Q ss_pred             cccHHHHHHHHHHcCceEEe---------eeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856           20 LQFLSFGCFLLVEKGIQTFQ---------RSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus        20 l~~l~~~~~~L~~~GI~~~~---------~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ...++++.++++++|+.+..         ...++ +.+++||+|||||.|||.+..
T Consensus        65 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~r~~~~~DPDGn~iei~q~d  119 (120)
T d1ecsa_          65 LDDLAEFYRQCKSVGIQETSSGYPRIHAPELQGW-GGTMAALVDPDGTLLRLIQNE  119 (120)
T ss_dssp             ESCHHHHHHHHHHTTCCBCSSSSSEEEEEEECTT-SSEEEEEECTTSCEEEEEECC
T ss_pred             ECCHHHHHHHHhhhhhhhccccccccccceecCC-CcEEEEEECCCCCEEEEEEcc
Confidence            44688999999999988743         22233 468999999999999998753

>d1jifa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptomyces verticillus [TaxId: 29309]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Streptomyces verticillus [TaxId: 29309]

Probab=98.61  E-value=4.3e-08  Score=56.58  Aligned_cols=44  Identities=9%  Similarity=-0.080  Sum_probs=32.4

Q ss_pred             cHHHHHHHHHHcCceEEe--------eeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856           22 FLSFGCFLLVEKGIQTFQ--------RSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus        22 ~l~~~~~~L~~~GI~~~~--------~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      +++++.++|+++++.+..        ......+.+++|++|||||.||+...
T Consensus        70 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdGn~ief~~~  121 (122)
T d1jifa_          70 DPDALHEEWARAVSTDYADTSGPAMTPVGESPAGREFAVRDPAGNCVHFTAG  121 (122)
T ss_dssp             CHHHHHHHHHTTSCSCTTCTTSCEECCCEEETTEEEEEEECTTCCEEEEEEC
T ss_pred             hhHHHHHHHHhhcceEEeeccccccCccccCCCeEEEEEECCCCCEEEEEeC
Confidence            577888999999877632        11111346899999999999999864

>d1xrka_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptoalloteichus hindustanus [TaxId: 2017]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Streptoalloteichus hindustanus [TaxId: 2017]

Probab=98.21  E-value=5e-07  Score=51.36  Aligned_cols=44  Identities=14%  Similarity=0.013  Sum_probs=27.8

Q ss_pred             ccHHHHHHHHHHcCceE--------EeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856           21 QFLSFGCFLLVEKGIQT--------FQRSLPDGKVKQVFFFDPDGNGLEVAS   64 (68)
Q Consensus        21 ~~l~~~~~~L~~~GI~~--------~~~~~p~~~~~QiF~~DPDGn~IEL~f   64 (68)
                      .++....+++++++++.        .....-.+..+++||+|||||.|||..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DPdGn~ief~~  119 (120)
T d1xrka_          68 RGLDELYAEWSEVVSTNFRDASGPAMTEIVEQPWGREFALRDPAGNCVHFVA  119 (120)
T ss_dssp             ECHHHHHHHHTTTSBSCTTTCSSCEECCCEEETTEEEEEEECTTCCEEEEEE
T ss_pred             ccHHHHHHHHHHhhhHHhhhcccccccCceecCCEEEEEEECCCCCEEEEEE
Confidence            35666666666555544        221111122389999999999999975

>d1t47a1 d.32.1.3 (A:16-178) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

Probab=98.16  E-value=3.8e-06  Score=51.23  Aligned_cols=55  Identities=9%  Similarity=0.060  Sum_probs=45.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC----CCCeeEEEEeCCCCCeEEEeee
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP----DGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p----~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..+.|++|.++      .++++.++|+++|+++...+..    .+.++..++.+|+|..++|...
T Consensus        83 ~G~~hiaf~Vd------Did~a~~~l~~~Ga~~~~~P~~~~d~~G~v~~a~I~~~g~~~~~lier  141 (163)
T d1t47a1          83 DGVVDLAIEVP------DARAAHAYAIEHGARSVAEPYELKDEHGTVVLAAIATYGKTRHTLVDR  141 (163)
T ss_dssp             SEEEEEEEECS------CHHHHHHHHHHTTCCEEEEEEEEEETTEEEEEEEEECSTTCEEEEEEE
T ss_pred             CceEEEEEeeC------CHHHHHHHHHHCCCeEEecCcceeCCCCEEEEEEEecCCCceEEEEec
Confidence            46899999997      6899999999999998554332    2568899999999999888753

>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.11  E-value=6.8e-06  Score=50.16  Aligned_cols=56  Identities=9%  Similarity=-0.063  Sum_probs=47.4

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEeeecC
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVASRRD   67 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~f~~~   67 (68)
                      .++|+||.++      .+++++++|+++|+++...+. -.++.+..++..++++.++|..+..
T Consensus       104 G~~Hiaf~Vd------Di~aa~~~l~~~G~~~~~~P~~~~~~~~~a~I~~~gd~~~~~v~r~~  160 (167)
T d1sqda1         104 GVRAVAIEVE------DAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYKA  160 (167)
T ss_dssp             EEEEEEEEES------CHHHHHHHHHHTTCCEEEEEEEETTTEEEEEEEEETTEEEEEEEECC
T ss_pred             CceEEEEEeC------CHHHHHHHHHHCCCEEecCCeecCCCEEEEEEEccCCcEEEEEecCC
Confidence            5899999998      599999999999999855443 3477898999999999999987654

>d1sqia1 d.32.1.3 (A:8-156) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.3e-05  Score=47.93  Aligned_cols=56  Identities=13%  Similarity=0.068  Sum_probs=44.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee----CCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL----PDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~----p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..+.|++|.++      .++++.++|+++|+++...+.    ..+.++..++..|+|+.+||+...
T Consensus        84 ~G~~hiaf~V~------di~~~~~~l~~~G~~~~~~P~~~~d~~G~v~~a~i~~~g~~~~~lier~  143 (149)
T d1sqia1          84 DGVKDIAFEVE------DCEHIVQKARERGAKIVREPWVEEDKFGKVKFAVLQTYGDTTHTLVEKI  143 (149)
T ss_dssp             SEEEEEEEEEE------CHHHHHHHHHHHTCCEEEEEEEEEETTEEEEEEEEECSTTCEEEEEEEE
T ss_pred             CeEEEEEEEec------cHHHHHHHHHHCCCEEccCCeEEECCCCeEEEEEEECCCCCEEEEEEeC
Confidence            45889999987      689999999999999854332    235577889999999999998753

>d1sp8a1 d.32.1.3 (A:36-207) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

Probab=97.96  E-value=1.1e-05  Score=49.99  Aligned_cols=56  Identities=7%  Similarity=-0.152  Sum_probs=46.2

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      ..++|+||.++      .+++++++|+++|+++...+.. .++.+..+++-|.+..++|+.+.
T Consensus        98 ~Gi~Hiaf~Vd------Di~aa~~~l~~~Ga~~~~~P~~~~~g~~~a~v~~~g~~~~~lve~~  154 (172)
T d1sp8a1          98 LAVRAVALRVA------DAEDAFRASVAAGARPAFGPVDLGRGFRLAEVELYGDVVLRYVSYP  154 (172)
T ss_dssp             SEEEEEEEEES------CHHHHHHHHHTTTCCEEEEEEEEETTEEEEEEEEETTEEEEEEECC
T ss_pred             CceEEEEEeeC------cHHHHHHHHHHCcCEeccCCccCCCCEEEEEEECCCCcEEEEEecC
Confidence            36899999998      6889999999999999554433 46789999999988888998654

>d1xy7a_ d.32.1.9 (A:) Hypothetical protein At5g48480 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein At5g48480
domain: Hypothetical protein At5g48480
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.88  E-value=7e-06  Score=48.31  Aligned_cols=44  Identities=14%  Similarity=-0.055  Sum_probs=34.4

Q ss_pred             cccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEe
Q 036856           20 LQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVA   63 (68)
Q Consensus        20 l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~   63 (68)
                      .+.++++.+++.++|.++....... -+.+..+|.||+||.|+|.
T Consensus        90 v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~  134 (135)
T d1xy7a_          90 TKDAEAAVAKAVDAGAVKVEVTEAEVELGFKGKVTDPFGVTWIFA  134 (135)
T ss_dssp             CSCHHHHHHHHHHTTCEECCCCHHHHHTTEEEEEECTTSCEEEEE
T ss_pred             ecCcceeEEEeecccceEecCcccccccCEEEEEECCCCCEEEEe
Confidence            3468899999999999985543321 2458899999999999986

>d1u6la_ d.32.1.7 (A:) Hypothetical protein PA1353 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA1353
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.60  E-value=0.00021  Score=42.22  Aligned_cols=55  Identities=13%  Similarity=-0.069  Sum_probs=38.2

Q ss_pred             eeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      --++++.++    .....+...+..++|.++...  +.|++. +..+|.||+|+.|+|+...
T Consensus        80 ~~~~~l~~~----~~d~~~~~~~~l~~G~~v~~p~~~~~wG~-~~g~v~Dp~G~~W~i~~~~  136 (137)
T d1u6la_          80 GCSISLNVD----SKAEAERLFNALAEGGSVQMPLGPTFWAA-SFGMFTDRFGVAWMVNCEQ  136 (137)
T ss_dssp             SEEEEEECS----SHHHHHHHHHHHHTTSEEEEEEEEETTEE-EEEEEECTTSCEEEEEESC
T ss_pred             cEEEEEEcC----CHHHHHHHHhhcccCceeecCccccCCCc-EEEEEECCCCCEEEEEecC
Confidence            344566665    333455566666788888553  445554 7899999999999999754

>d1cjxa1 d.32.1.3 (A:4-153) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=97.34  E-value=0.00013  Score=44.98  Aligned_cols=56  Identities=14%  Similarity=-0.018  Sum_probs=43.9

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~   66 (68)
                      .++.|+||.++      .+++++++|+++|++.-..+...+...--.+++|+|..|.|..+.
T Consensus        72 ~gv~hiaf~V~------D~~~a~~~a~~~Ga~~i~~~~~~g~~~~~~i~g~gg~~i~Fv~~~  127 (150)
T d1cjxa1          72 PSVCGMAFRVK------DSQKAYNRALELGAQPIHIDTGPMELNLPAIKGIGGAPLYLIDRF  127 (150)
T ss_dssp             SEEEEEEEEES------CHHHHHHHHHHTTCCBCCCCCCTTCBCCCEEECGGGCEEEEECCC
T ss_pred             CceEEEEEEeC------CHHHHHHHHHHCCCEEcccCCCCCceeeeEEEcCCCCEEEEECcC
Confidence            46899999998      688999999999998754443334555667889999999887543

>d1t47a2 d.32.1.3 (A:179-377) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

Probab=96.55  E-value=0.0034  Score=40.48  Aligned_cols=55  Identities=16%  Similarity=0.157  Sum_probs=41.1

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEeee------------------------------eCCCCeeEEEEeC
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS------------------------------LPDGKVKQVFFFD   54 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~------------------------------~p~~~~~QiF~~D   54 (68)
                      +.|+|+||.++      .+.++++.|+++|+++-..+                              .+.+...|+|-.-
T Consensus        88 ~GiQHIAl~td------DI~~av~~L~~~G~~fL~~p~~YY~~l~~r~~~~~~~~~~l~~~~IL~D~d~~g~llqift~~  161 (199)
T d1t47a2          88 AGVQHIALNTG------DIVETVRTMRAAGVQFLDTPDSYYDTLGEWVGDTRVPVDTLRELKILADRDEDGYLLQIFTKP  161 (199)
T ss_dssp             CEEEEEEEECS------CHHHHHHHHHHTTCCBCCCCGGGTTSHHHHHCCCSSCHHHHHHHTCEEEECSSCEEEEEEBCC
T ss_pred             CcceEEEEEcC------CHHHHHHHHHHcCCCCCCCChHHHHHHHHHhcccccCHHHHHhcCeEEecCCCCeEEEEEecc
Confidence            47999999988      68999999999999886533                              2345677777664


Q ss_pred             CC---CCeEEEeee
Q 036856           55 PD---GNGLEVASR   65 (68)
Q Consensus        55 PD---Gn~IEL~f~   65 (68)
                      -.   +.-+|++..
T Consensus       162 ~~~~~~~FfEiiqR  175 (199)
T d1t47a2         162 VQDRPTVFFEIIER  175 (199)
T ss_dssp             SSSSSCCEEEEEEE
T ss_pred             cCCCCceeEEEEEE
Confidence            43   577777764

>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=95.20  E-value=0.0068  Score=38.75  Aligned_cols=29  Identities=17%  Similarity=0.088  Sum_probs=24.8

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ   39 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~   39 (68)
                      ..++|+||.++      ++.+++++|+++|+++-.
T Consensus        83 ~GiqHIAf~vd------DI~aav~~L~~~Gv~fL~  111 (203)
T d1cjxa2          83 EGIQHVAFLTD------DLVKTWDALKKIGMRFMT  111 (203)
T ss_dssp             SBCCEEEEEES------CHHHHHHHHHHTTCCBCC
T ss_pred             CCCceEEEEeC------CHHHHHHHHHhcCCcccc
Confidence            35999999987      689999999999988843

>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.014  Score=37.74  Aligned_cols=29  Identities=14%  Similarity=0.159  Sum_probs=24.5

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ   39 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~   39 (68)
                      +.+||+||.++      .+.++.++|+++|+++-.
T Consensus       106 ~GiQHIAf~t~------DI~~av~~L~~~Gv~fL~  134 (210)
T d1sqia2         106 AGVQHIALRTE------DIITTIRHLRERGMEFLA  134 (210)
T ss_dssp             SEEEEEEEEES------CHHHHHHHHHHHTCCBCC
T ss_pred             CCeeEEEEEcC------CHHHHHHHHHHcCCCCCC
Confidence            35999999987      688999999999998854

>d1u7ia_ d.32.1.7 (A:) Hypothetical protein PA1358 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA1358
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.72  E-value=0.31  Score=28.20  Aligned_cols=42  Identities=10%  Similarity=-0.011  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHcCceEEee-eeCCCCeeEEEEeCCCCCeEEEeee
Q 036856           23 LSFGCFLLVEKGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus        23 l~~~~~~L~~~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      .+...+.|.+.|-...+. ..+++ .+.-.+.||.|+.|.|+++
T Consensus        91 ~~~~~~~l~~gg~v~~p~~~~~~g-~~~g~v~D~fGv~W~i~~~  133 (134)
T d1u7ia_          91 IERLAEALSDGGKALMPLGDYGFS-QRFAWLADRFGVSWQLNLA  133 (134)
T ss_dssp             HHHHHHHHHTTSEEEEEEECCSSS-SEEEEEECTTSCEEEEEEC
T ss_pred             HHHHHHHHhcCCEEecCccccccc-ceEEEEECCCCCEEEEEcC
Confidence            455566676655443332 33444 4788899999999999975

>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

Probab=92.19  E-value=0.044  Score=35.44  Aligned_cols=25  Identities=4%  Similarity=-0.063  Sum_probs=19.5

Q ss_pred             ceeeEEEecChhhccccHHHHHHHHHHcCce
Q 036856            6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQ   36 (68)
Q Consensus         6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~   36 (68)
                      .++|+||.++      .+.+++++|+++|+.
T Consensus        91 GiqHIAf~vd------DI~~av~~L~arGv~  115 (224)
T d1sp8a2          91 GVQHMALASD------DVLRTLREMQARSAM  115 (224)
T ss_dssp             EEEEEEEEET------THHHHHHHHHTSGGG
T ss_pred             CceeEEEEeC------CHHHHHHHHHhcccc
Confidence            5999999998      577777777777643

>d1tsja_ d.32.1.7 (A:) Hypothetical protein MW1090 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein MW1090
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.71  E-value=0.59  Score=26.91  Aligned_cols=44  Identities=14%  Similarity=0.040  Sum_probs=30.8

Q ss_pred             ccHHHHHHHHHHcCceEEe-eeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856           21 QFLSFGCFLLVEKGIQTFQ-RSLPDGKVKQVFFFDPDGNGLEVASR   65 (68)
Q Consensus        21 ~~l~~~~~~L~~~GI~~~~-~~~p~~~~~QiF~~DPDGn~IEL~f~   65 (68)
                      ..++...+.|.+.|-.... ...|++ .+.-.+.||.|+.|.|+.+
T Consensus        84 ~e~~~~~~~L~~gg~v~~p~~~~~~g-~~~g~v~D~fGv~W~i~~p  128 (129)
T d1tsja_          84 IEMERLFNGLKDEGAILMPKTNMPPY-REFAWVQDKFGVSFQLALP  128 (129)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEEETTE-EEEEEEECTTSCEEEEEEC
T ss_pred             HHHHHHHHHhccCCEEeccccccccc-ceEEEEECCCCCEEEEeCC
Confidence            3456677888777743333 244554 4778999999999999875

>d1sqda2 d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.63  E-value=0.099  Score=33.88  Aligned_cols=24  Identities=8%  Similarity=-0.043  Sum_probs=17.3

Q ss_pred             cceeeEEEecChhhccccHHHHHHHHHHcC
Q 036856            5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKG   34 (68)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~G   34 (68)
                      .-+||+||.++      ++.++++.|+++|
T Consensus       103 ~GiQHIAf~td------DI~aav~~LrarG  126 (230)
T d1sqda2         103 AGLQHLALMSE------DIFRTLREMRKRS  126 (230)
T ss_dssp             CEEEEEEEEES------CHHHHHHHHHHHG
T ss_pred             CceeEEEEEeC------CHHHHHHHHHHhh
Confidence            36999999988      4666666666653

>d1zswa1 d.32.1.10 (A:1-144) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: BC1024-like
domain: Hypothetical protein BC1024
species: Bacillus cereus [TaxId: 1396]

Probab=87.72  E-value=1.3  Score=24.59  Aligned_cols=51  Identities=16%  Similarity=0.253  Sum_probs=37.9

Q ss_pred             CccccceeeEEEecChhhccccHHHHHHHHHH-cCceEEeeee--CCCCeeEEEEeCCCC
Q 036856            1 MFEAGSLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQRSL--PDGKVKQVFFFDPDG   57 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~~~--p~~~~~QiF~~DPDG   57 (68)
                      |++--+|.|+++.++      .++++++...+ .|.+......  ...+.+.+++.+..+
T Consensus         1 m~~i~gl~Hv~l~v~------Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~   54 (144)
T d1zswa1           1 MYEIKGHHHISMVTK------NANENNHFYKNVLGLRRVKMTVNQDDPSMYHLFYGDKTG   54 (144)
T ss_dssp             SSCCCSEEEEEEEES------CHHHHHHHHHTTTCCEEEEEEEETTEEEEEEEEEESTTC
T ss_pred             CCcccceeeEEEEeC------CHHHHHHHHHHHhCCeeEeeeccccCCceeEEEeccccc
Confidence            889999999999887      68899999988 7998755432  224556666666554

>d2f9zc1 d.194.1.3 (C:1-157) Chemoreceptor glutamine deamidase CheD {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CNF1/YfiH-like putative cysteine hydrolases
superfamily: CNF1/YfiH-like putative cysteine hydrolases
family: CheD-like
domain: Chemoreceptor glutamine deamidase CheD
species: Thermotoga maritima [TaxId: 2336]

Probab=83.88  E-value=1.2  Score=27.35  Aligned_cols=42  Identities=14%  Similarity=0.071  Sum_probs=35.4

Q ss_pred             ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856           19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL   60 (68)
Q Consensus        19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I   60 (68)
                      +-+..+++.+.|++.||++...++-...-|.+.|.--+|..+
T Consensus       101 G~rNv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v~  142 (157)
T d2f9zc1         101 GARNVEAVKKHLKDFGIKLLAEDTGGNRARSVEYNIETGKLL  142 (157)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECCSSCEEEEEETTTTEEE
T ss_pred             HHHHHHHHHHHHHHCCCcEEEEECCCCCCcEEEEECCCCEEE
Confidence            357899999999999999999998887778998877777543

>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: PG1857-like
superfamily: PG1857-like
family: PG1857-like
domain: Hypothetical protein PG1857
species: Porphyromonas gingivalis [TaxId: 837]

Probab=81.60  E-value=1.4  Score=26.06  Aligned_cols=36  Identities=17%  Similarity=0.204  Sum_probs=28.7

Q ss_pred             cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCC
Q 036856           20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDP   55 (68)
Q Consensus        20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DP   55 (68)
                      -..+..++++|+.+||+|...+++.+.---+||=.|
T Consensus        31 ~~~~~~~~~rL~~~~I~y~iq~v~~~~kvNlFFG~~   66 (111)
T d2guka1          31 NDDIPYAEERLRSRQIPYFAQPTPNTERTNLFFGCK   66 (111)
T ss_dssp             GGGHHHHHHHHHHTTCCEEEECCTTSSEEEEEEECH
T ss_pred             HhHHHHHHHHHhhCCCCeEEEEcCCCCeEEEEeCCH
Confidence            456888999999999999988877666667777543