Citrus Sinensis ID: 036862

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MSTSAGKAWIVALSVGALEAFRDQAGICRWNNSIRSFAQVNLIYAPASDFRDMINFSSVFRNKNSMEKIMLLGCWGPNTVRF
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccccHHccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHHEEEcccccccEcc
Coil and Loop (DISEMBL)
MSTSAGKAWIVALSVGALEAFRDqagicrwnnsIRSFAQVNliyapasdfrdmINFSSVFRNKNSMEKIMLLgcwgpntvrf
Flexible Loop (DISEMBL)
MSTSAGKAWIVALSVGALEAFRDQAGICRWNNSIRSFAQVNLIYAPASDFRDMINFSSVFRNKNSMEKIMllgcwgpntvrf
Low Complexity Region (SEG)
MSTSAGKAWIVALSVGALEAFRDQAGICRWNNSIRSFAQVNLIYAPASDFRDMINFSSVFRNKNSMEKIMLLGCWGPNTVRF
Disordered region (IsUnstruct)
******KAWIVALSVGALEAFRDQAGICRWNNSIRSFAQVNLIYAPASDFRDMINFSSVFRNKNSMEKIMLLGCWGP*****
Disordered Region (DISOPRED)
******K***VALSVGALEAFRDQAGICRWNNS************************************MLLGCWGPNTV**
Disordered Region (DISEMBL)
MSTSAGKAWIVALSVGALEAFRDQAGICRWNNSIRSFAQVNLIYAPASDFRDMINFSSVFRNKNSMEKIMLLGCWGPNTVRF
Disordered Region (DISPRO)
******KAWIVALSVGALEAFRDQAGICRWNNSIRSFAQ************************NSMEKIMLLGCWGPNTV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTSAGKAWIVALSVGALEAFRDQAGICRWNNSIRSFAQVNLIYAPASDFRDMINFSSVFRNKNSMEKIMLLGCWGPNTVRF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
356543984	89	PREDICTED: uncharacterized protein LOC10	0.926	0.853	0.456	3e-12
356549781	89	PREDICTED: uncharacterized protein LOC10	0.975	0.898	0.454	4e-12
388508246	91	unknown [Lotus japonicus]	0.987	0.890	0.438	4e-11
255569607	100	conserved hypothetical protein [Ricinus	0.951	0.78	0.434	4e-11
242077322	82	hypothetical protein SORBIDRAFT_06g02986	0.865	0.865	0.404	1e-10
242077326	82	hypothetical protein SORBIDRAFT_06g02988	0.865	0.865	0.404	1e-10
242077328	82	hypothetical protein SORBIDRAFT_06g02989	0.865	0.865	0.404	2e-10
19320	76	wound induced protein [Solanum lycopersi	0.853	0.921	0.447	3e-10
388511253	89	unknown [Medicago truncatula]	0.926	0.853	0.413	5e-10
225447665	87	PREDICTED: uncharacterized protein LOC10	0.878	0.827	0.416	8e-10

>gi|356543984|ref|XP_003540436.1| PREDICTED: uncharacterized protein LOC100777261 [Glycine max]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 16/92 (17%)

Query: 3  TSAGKAWIVALSVGALEAFRDQAGICRWNNSIRSFAQVNLIYAPAS--DFRDMINFSS-- 58
          ++A +AWIVA S+GA+EA +DQ G+CRWN+++RS  Q    +A ++   +    N SS  
Sbjct: 2  SAATRAWIVASSIGAVEALKDQLGVCRWNHALRSLQQ----HAKSNIRSYTQAKNLSSAT 57

Query: 59 -------VFRNK-NSMEKIMLLGCWGPNTVRF 82
                 V R K  SM KIM L CWGPNT RF
Sbjct: 58 SAAVSNKVKRTKEESMRKIMDLSCWGPNTSRF 89

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549781|ref|XP_003543269.1| PREDICTED: uncharacterized protein LOC100306608 [Glycine max] gi|356549787|ref|XP_003543272.1| PREDICTED: uncharacterized protein LOC100793429 [Glycine max] gi|255629057|gb|ACU14873.1| unknown [Glycine max]

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 8/88 (9%)

Query: 3  TSAGKAWIVALSVGALEAFRDQAGICRWNNSIRSF---AQVNL-IYAPASDFRDMINFS- 57
          ++A +AWIVA S+GA+EA +DQ G+CRWN+++RS    A+ N+  Y  A       + + 
Sbjct: 2  SAASRAWIVASSIGAVEALKDQLGVCRWNHALRSLQQHAKSNIRSYTQAKTLSSATSAAV 61

Query: 58 --SVFRNK-NSMEKIMLLGCWGPNTVRF 82
             V R K  SM K+M L CWGPNT RF
Sbjct: 62 SNKVKRTKEESMRKVMDLSCWGPNTSRF 89

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508246|gb|AFK42189.1| unknown [Lotus japonicus]

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 8/89 (8%)

Query: 2  STSAGKAWIVALSVGALEAFRDQAGICRWNNSIRSF---AQVNL-IYAPASDF---RDMI 54
          +T+A +AW+VA SVG +EA +DQ G+CRWN ++RS    A+ N+  YA A          
Sbjct: 3  ATAATRAWVVASSVGVVEALKDQLGVCRWNYALRSLQQHAKTNIRSYAQAKKLSSASSAA 62

Query: 55 NFSSVFRNKN-SMEKIMLLGCWGPNTVRF 82
            + V R K+ SM+++M L CWGP+T RF
Sbjct: 63 VSNKVKRTKDESMKRVMDLNCWGPSTARF 91

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569607|ref|XP_002525769.1| conserved hypothetical protein [Ricinus communis] gi|223534919|gb|EEF36605.1| conserved hypothetical protein [Ricinus communis]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 59/99 (59%), Gaps = 21/99 (21%)

Query: 4   SAGKAWIVALSVGALEAFRDQAGICRWN-----------NSIRSFAQVNLIYAPASDF-- 50
           +A KAWIVA S+GA+EA +DQ GICRWN           N+IRSFAQ N + +  S    
Sbjct: 3   AARKAWIVAASIGAVEALKDQ-GICRWNYTLRSLQQHAKNNIRSFAQANTVSSSGSSSSS 61

Query: 51  ------RDMINFSSVFRNKNS-MEKIMLLGCWGPNTVRF 82
                  ++I  ++  + K + MEK+M L CWGP+T+RF
Sbjct: 62  AAVAMSNEIIRNNAELKKKEAAMEKVMGLSCWGPSTIRF 100

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242077322|ref|XP_002448597.1| hypothetical protein SORBIDRAFT_06g029860 [Sorghum bicolor] gi|241939780|gb|EES12925.1| hypothetical protein SORBIDRAFT_06g029860 [Sorghum bicolor]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 18/89 (20%)

Query: 1  MSTSAGKAWIVALSVGALEAFRDQAGICRWNNSIR-----------SFAQVNLIYAPASD 49
          M+ +A  +W+VA+SVGA+EA +DQAG+CRWN ++R           SFAQ     APA  
Sbjct: 1  MAAAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSVHRAAKANAPSFAQAKKKLAPAEK 60

Query: 50 FRDMINFSSVFRNKNSMEKIMLLGCWGPN 78
           R         + +  M  +M L CWGPN
Sbjct: 61 SR-------ADKAEEGMRTVMYLSCWGPN 82

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242077326|ref|XP_002448599.1| hypothetical protein SORBIDRAFT_06g029880 [Sorghum bicolor] gi|241939782|gb|EES12927.1| hypothetical protein SORBIDRAFT_06g029880 [Sorghum bicolor]

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 18/89 (20%)

Query: 1  MSTSAGKAWIVALSVGALEAFRDQAGICRWNNSIR-----------SFAQVNLIYAPASD 49
          M+ +A  +W+VA+SVGA+EA +DQAG+CRWN ++R           SFAQ     APA  
Sbjct: 1  MAAAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSVHRAAKANAPSFAQAKKKLAPAEK 60

Query: 50 FRDMINFSSVFRNKNSMEKIMLLGCWGPN 78
           R         + +  M  +M L CWGPN
Sbjct: 61 KR-------ADKAEEGMRTVMYLSCWGPN 82

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242077328|ref|XP_002448600.1| hypothetical protein SORBIDRAFT_06g029890 [Sorghum bicolor] gi|241939783|gb|EES12928.1| hypothetical protein SORBIDRAFT_06g029890 [Sorghum bicolor]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 18/89 (20%)

Query: 1  MSTSAGKAWIVALSVGALEAFRDQAGICRWNNSIR-----------SFAQVNLIYAPASD 49
          M+ +A  +W+VA+SVGA+EA +DQAG+CRWN ++R           SFAQ     APA  
Sbjct: 1  MAAAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSIHQAAKANAPSFAQAKKKLAPAER 60

Query: 50 FRDMINFSSVFRNKNSMEKIMLLGCWGPN 78
           R         + +  M  +M L CWGPN
Sbjct: 61 RR-------ADKAEEGMRTVMYLSCWGPN 82

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19320|emb|CAA42537.1| wound induced protein [Solanum lycopersicum]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 6/76 (7%)

Query: 9  WIVALSVGALEAFRDQAGICRWNNSIRSFAQVNL----IYAPASDFRDMINFSS--VFRN 62
          WIVA SVGA+EA +DQ G+CRWN  +RS AQ        Y+ A      I   S  + ++
Sbjct: 1  WIVAASVGAVEALKDQVGLCRWNYPLRSLAQHTKNNVRSYSQAKKLSSSITTKSEKMEKS 60

Query: 63 KNSMEKIMLLGCWGPN 78
          + S+ K+M L CWGPN
Sbjct: 61 EESLRKVMYLSCWGPN 76

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511253|gb|AFK43688.1| unknown [Medicago truncatula]

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 16/92 (17%)

Query: 3  TSAGKAWIVALSVGALEAFRDQAGICRWN-----------NSIRSFAQVNLIYAPASDFR 51
          ++A KAW+VA S+GA+EA +DQ G+CRWN           N+IRS++Q   + + +S   
Sbjct: 2  SAATKAWVVASSIGAVEALKDQLGVCRWNYAFRSLHQHAKNNIRSYSQAKKLSSASS--- 58

Query: 52 DMINFSSVFRNK-NSMEKIMLLGCWGPNTVRF 82
               + V R+K  SM K++ L CWGP+T RF
Sbjct: 59 -AAVSNKVKRSKEESMRKVIDLNCWGPSTARF 89

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447665|ref|XP_002275507.1| PREDICTED: uncharacterized protein LOC100247673 [Vitis vinifera]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 12/84 (14%)

Query: 6  GKAWIVALSVGALEAFRDQAGICRWN-----------NSIRSFAQVNLIYAPASDFRDMI 54
          GKAWIVA SVGA+EA +DQ G CRWN           NS+RSF+QV  + + ++     +
Sbjct: 5  GKAWIVAASVGAVEALKDQ-GFCRWNYTMRSIHQHARNSLRSFSQVKKLSSSSAMVSSRV 63

Query: 55 NFSSVFRNKNSMEKIMLLGCWGPN 78
                +++ S+  +M L CWGPN
Sbjct: 64 RDEKAKQSEESLRTVMYLSCWGPN 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:1005716386	83	AT4G10265 "AT4G10265" [Arabido	0.902	0.891	0.416	5.8e-11
TAIR|locus:2122799	90	AT4G10270 "AT4G10270" [Arabido	0.926	0.844	0.370	3.6e-09
TAIR|locus:2134188	95	AT4G33560 "AT4G33560" [Arabido	0.951	0.821	0.357	2.1e-06

TAIR|locus:1005716386 AT4G10265 "AT4G10265" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 35/84 (41%), Positives = 48/84 (57%)

Query:     3 TSAGKAWIVALSVGALEAFRDQAGICRWNNSIRSFAQV---NLIYAPASDFRDMINFSSV 59
             +SA K W+VA S+GA+EA +DQ G+CRWN  IRS  Q    NL     S  + + + S  
Sbjct:     2 SSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNL--RSVSQAKKLSSSSID 59

Query:    60 FRNKN-----SMEKIMLLGCWGPN 78
             + NK      S+  +M L CWGP+
Sbjct:    60 YTNKTKQAEESLRTVMYLSCWGPS 83

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2122799 AT4G10270 "AT4G10270" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 33/89 (37%), Positives = 47/89 (52%)

Query:     3 TSAGKAWIVALSVGALEAFRDQAGICRWNNSIRSFAQV--NLIYAPASDFR-DMINFSSV 59
             +S  KAW VA+S+GA+EA +DQ G+CRWN  +RS  Q   N + + +   R    + S+ 
Sbjct:     2 SSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAA 61

Query:    60 FRNKNSMEK----------IMLLGCWGPN 78
               +    EK          +M L CWGPN
Sbjct:    62 VTSSGESEKAKKAEESLRTVMYLSCWGPN 90

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2134188 AT4G33560 "AT4G33560" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 34/95 (35%), Positives = 48/95 (50%)

Query:     4 SAGK--AWIVALSVGALEAFRDQAGICRWNNSIR-----SFAQVNLIYAPASDFRDMINF 56
             +AGK  +W VA ++ A+E  +DQ G+ RWN   R     + A+V  I  P+       + 
Sbjct:     2 NAGKQASWAVATAIAAVEVLKDQ-GVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSS 60

Query:    57 SSV-FRNK--------NSMEKIMLLGCWGPNTVRF 82
             S+   R+K         S EK M L C+GP TVRF
Sbjct:    61 SATSIRSKPLSTTPFETSFEKAMGLSCFGPTTVRF 95


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.133   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        82   0.00091  102 3  11 22  0.36    29
                                                     29  0.43    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  526 (56 KB)
  Total size of DFA:  104 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.48u 0.16s 7.64t   Elapsed:  00:00:01
  Total cpu time:  7.48u 0.16s 7.64t   Elapsed:  00:00:01
  Start:  Fri May 10 09:16:54 2013   End:  Fri May 10 09:16:55 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb06g029860.1 hypothetical protein (83 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	82
PLN00165	88	PLN00165, PLN00165, hypothetical protein; Provisio	7e-14
pfam12609	78	pfam12609, DUF3774, Wound-induced protein	7e-09

>gnl|CDD|165732 PLN00165, PLN00165, hypothetical protein; Provisional

 Score = 60.1 bits (145), Expect = 7e-14
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 13/88 (14%)

Query: 3  TSAGKAWIVALSVGALEAFRDQAGICRWN-----------NSIRSFAQVNLIYAPASDF- 50
          +  GKAWIVA SVGA+EA +DQ G CRWN           N++RSF+Q   + + +S   
Sbjct: 2  SHMGKAWIVAASVGAVEALKDQ-GFCRWNYTLRSIHQHAKNNLRSFSQAKKLSSSSSAMV 60

Query: 51 RDMINFSSVFRNKNSMEKIMLLGCWGPN 78
             +      +++ S+  +M L CWGPN
Sbjct: 61 SSRVREEKAKQSEESLRTVMYLSCWGPN 88

Length = 88

>gnl|CDD|221661 pfam12609, DUF3774, Wound-induced protein

 Score = 47.0 bits (112), Expect = 7e-09
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 13/79 (16%)

Query: 11 VALSVGALEAFRDQAGICRWNNSIRSFAQ-----VNLIYAPASDFRD-----MINFSSVF 60
          VA SVGA+EA +DQ G+CRWN ++RS  Q          + A              + V 
Sbjct: 1  VAASVGAVEALKDQ-GLCRWNYALRSLHQAAKANARRSASQAGKSSSSSSSASAAAAEVK 59

Query: 61 RNKN--SMEKIMLLGCWGP 77
            +   S+  +M L CWGP
Sbjct: 60 AKQAEESLRTVMYLSCWGP 78

This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
PLN00165	88	hypothetical protein; Provisional	100.0
PF12609	79	DUF3774: Wound-induced protein; InterPro: IPR02225	100.0

>PLN00165 hypothetical protein; Provisional

Probab=100.00  E-value=4.5e-43  Score=232.10  Aligned_cols=76  Identities=45%  Similarity=0.861  Sum_probs=60.2

Q ss_pred             CCccchhHHHHHHhHHHHHhhcccccccccCcCccch-----------hhhcccCCCccc-ccccccccccccccccccc
Q 036862            1 MSTSAGKAWIVALSVGALEAFRDQAGICRWNNSIRSF-----------AQVNLIYAPASD-FRDMINFSSVFRNKNSMEK   68 (82)
Q Consensus         1 m~~~~~~aw~vAaSvgaVEalKDQ~g~CRwn~~~rS~-----------sqa~~lss~ss~-~~~~~~~~k~k~aEESLRt   68 (82)
                      |+ +.+++||||+||||||+|||| |+||||+.|||+           +|++++++++++ .....++++.+|+||||||
T Consensus         1 Ms-~~~r~w~vAaSvgaVEalkDQ-G~cRwny~lrS~~~~a~~~~~s~s~~~~lss~~~~~~s~~~~~~k~kq~EEsLRt   78 (88)
T PLN00165          1 MS-HMGKAWIVAASVGAVEALKDQ-GFCRWNYTLRSIHQHAKNNLRSFSQAKKLSSSSSAMVSSRVREEKAKQSEESLRT   78 (88)
T ss_pred             Cc-cchhHHHHHHHHHHHhhcccc-CeeehhhHHHHHHHHHHhccccccccccCCCcchhhhhhhhccccccchHHhhhe
Confidence            77 789999999999999999999 999999666654           445555444322 2222356788999999999


Q ss_pred             eeeecccCCC
Q 036862           69 IMLLGCWGPN   78 (82)
Q Consensus        69 VMyLSCWGPn   78 (82)
                      ||||||||||
T Consensus        79 VMyLSCWGPN   88 (88)
T PLN00165         79 VMYLSCWGPN   88 (88)
T ss_pred             eeEecccCCC
Confidence            9999999998

>PF12609 DUF3774: Wound-induced protein; InterPro: IPR022251 This family of proteins is found in eukaryotes

Probab=100.00  E-value=3.1e-36  Score=194.76  Aligned_cols=67  Identities=40%  Similarity=0.737  Sum_probs=52.7

Q ss_pred             HHHhHHHHHhhcccccccccCcCccchhhhcc--c----------CCCcccccccccccccccccccccceeeecccCC
Q 036862           11 VALSVGALEAFRDQAGICRWNNSIRSFAQVNL--I----------YAPASDFRDMINFSSVFRNKNSMEKIMLLGCWGP   77 (82)
Q Consensus        11 vAaSvgaVEalKDQ~g~CRwn~~~rS~sqa~~--l----------ss~ss~~~~~~~~~k~k~aEESLRtVMyLSCWGP   77 (82)
                      ||+||||||+||||+|+||||+++||++|..+  +          +++++.......+++.+|+|||||||||||||||
T Consensus         1 vAasvgavealKDq~g~crwn~alrs~~~~a~~~~~~s~~~~~~~~ss~~~~~~~~~~~~~k~aEEsLRtVMyLSCWGP   79 (79)
T PF12609_consen    1 VAASVGAVEALKDQAGLCRWNYALRSLHQHAKANVRGSASQAKRLSSSSSSSSAAAEEEKRKQAEESLRTVMYLSCWGP   79 (79)
T ss_pred             CchhHHHHhccccccccccccHHHHHHHHHhhhccccccccccccCcccccccccccccccchhhhhhceeEEEeccCc
Confidence            68999999999999999999999988777543  2          1111111223367889999999999999999999

Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00