Citrus Sinensis ID: 036866
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 254 | ||||||
| 388491254 | 261 | unknown [Lotus japonicus] | 1.0 | 0.973 | 0.669 | 1e-102 | |
| 356566120 | 257 | PREDICTED: cysteine-rich repeat secretor | 0.996 | 0.984 | 0.679 | 1e-102 | |
| 357504959 | 257 | Cysteine-rich repeat secretory protein [ | 1.0 | 0.988 | 0.665 | 1e-99 | |
| 255584667 | 281 | DUF26 domain-containing protein 1 precur | 0.866 | 0.782 | 0.736 | 4e-94 | |
| 359494772 | 262 | PREDICTED: cysteine-rich repeat secretor | 0.929 | 0.900 | 0.672 | 5e-94 | |
| 147772330 | 399 | hypothetical protein VITISV_020515 [Viti | 0.925 | 0.588 | 0.669 | 5e-94 | |
| 255571707 | 260 | DUF26 domain-containing protein 2 precur | 0.960 | 0.938 | 0.638 | 8e-92 | |
| 15239000 | 263 | cysteine-rich repeat secretory protein 5 | 0.952 | 0.920 | 0.594 | 3e-82 | |
| 297795529 | 263 | hypothetical protein ARALYDRAFT_494916 [ | 0.929 | 0.897 | 0.607 | 6e-82 | |
| 359494778 | 255 | PREDICTED: cysteine-rich repeat secretor | 0.901 | 0.898 | 0.634 | 2e-80 |
| >gi|388491254|gb|AFK33693.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/260 (66%), Positives = 212/260 (81%), Gaps = 6/260 (2%)
Query: 1 MALLQSLVLLLFLYICAAD------PLGEFCNKDSNVSGNGMISANIDNLLAELVAETAK 54
M LL ++ L L I A+ PLGEFCN+++ +S G +SANID LLAE + +T
Sbjct: 1 MHLLYKIIFSLLLCISIAESQDLSGPLGEFCNENTKISSGGKLSANIDKLLAEFILKTPS 60
Query: 55 TGYIATSYGKDQDKVFGLAQCRGDVDSKDCASCIQDAAKQIRQRCVNQADARIWYDYCFL 114
TG++ATSYG +QD+V+GLAQCRGDV ++DC++CIQDAAKQIRQ+C NQ DARIWYDYCFL
Sbjct: 61 TGFVATSYGNNQDQVYGLAQCRGDVSTQDCSNCIQDAAKQIRQKCPNQVDARIWYDYCFL 120
Query: 115 RYNTENFVGKVDTSFGIFYYNVENVTDPKSFNKELGALMDEIRSQAVVPKNEGLGKGETT 174
RYN ++F+G VDTSFGIFY+NV+NVTDP+ FNKELG+LM +IR QAV PK +GLGKG+T
Sbjct: 121 RYNNKSFIGDVDTSFGIFYFNVKNVTDPEGFNKELGSLMGKIRGQAVKPKAQGLGKGKTN 180
Query: 175 LSPFVTLYALVQCTRDLSQIDCAQCLAIAVGNFPNFCNNKKGCRVLYSSCYVRYELYPFF 234
LSPF+TLYALVQCTRDLS+I CAQCLA+AV NFP FC+N+KGCRVLYSSCYVRYELYPFF
Sbjct: 181 LSPFLTLYALVQCTRDLSEISCAQCLAVAVSNFPTFCDNRKGCRVLYSSCYVRYELYPFF 240
Query: 235 FPLDSKNTLADTSIKVVVFP 254
FPLDS T + +V+P
Sbjct: 241 FPLDSSKTGDSNVARAIVYP 260
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Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566120|ref|XP_003551283.1| PREDICTED: cysteine-rich repeat secretory protein 55-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357504959|ref|XP_003622768.1| Cysteine-rich repeat secretory protein [Medicago truncatula] gi|355497783|gb|AES78986.1| Cysteine-rich repeat secretory protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|255584667|ref|XP_002533056.1| DUF26 domain-containing protein 1 precursor, putative [Ricinus communis] gi|223527154|gb|EEF29326.1| DUF26 domain-containing protein 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|359494772|ref|XP_002264674.2| PREDICTED: cysteine-rich repeat secretory protein 55-like [Vitis vinifera] gi|296080916|emb|CBI18746.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147772330|emb|CAN64566.1| hypothetical protein VITISV_020515 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255571707|ref|XP_002526797.1| DUF26 domain-containing protein 2 precursor, putative [Ricinus communis] gi|223533873|gb|EEF35603.1| DUF26 domain-containing protein 2 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|15239000|ref|NP_199665.1| cysteine-rich repeat secretory protein 55 [Arabidopsis thaliana] gi|75180590|sp|Q9LV60.1|CRR55_ARATH RecName: Full=Cysteine-rich repeat secretory protein 55; Flags: Precursor gi|8777384|dbj|BAA96974.1| 33 kDa secretory protein-like [Arabidopsis thaliana] gi|15292981|gb|AAK93601.1| putative 33 kDa secretory protein [Arabidopsis thaliana] gi|20259257|gb|AAM14364.1| putative 33 kDa secretory protein [Arabidopsis thaliana] gi|332008300|gb|AED95683.1| cysteine-rich repeat secretory protein 55 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297795529|ref|XP_002865649.1| hypothetical protein ARALYDRAFT_494916 [Arabidopsis lyrata subsp. lyrata] gi|297311484|gb|EFH41908.1| hypothetical protein ARALYDRAFT_494916 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|359494778|ref|XP_002269937.2| PREDICTED: cysteine-rich repeat secretory protein 55 [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 254 | ||||||
| TAIR|locus:2166091 | 263 | AT5G48540 "AT5G48540" [Arabido | 0.885 | 0.855 | 0.627 | 1.1e-78 | |
| TAIR|locus:2095662 | 252 | AT3G22060 "AT3G22060" [Arabido | 0.807 | 0.813 | 0.410 | 2.8e-43 | |
| TAIR|locus:2115728 | 675 | CRK25 "cysteine-rich RLK (RECE | 0.850 | 0.32 | 0.333 | 3.6e-31 | |
| TAIR|locus:2085470 | 258 | AT3G58310 "AT3G58310" [Arabido | 0.755 | 0.744 | 0.355 | 6.2e-30 | |
| TAIR|locus:2141762 | 665 | CRK26 "cysteine-rich RLK (RECE | 0.854 | 0.326 | 0.333 | 4e-29 | |
| TAIR|locus:2121676 | 669 | CRK10 "cysteine-rich RLK (RECE | 0.850 | 0.322 | 0.314 | 5.2e-29 | |
| TAIR|locus:2065878 | 255 | AT2G31620 "AT2G31620" [Arabido | 0.704 | 0.701 | 0.380 | 1.9e-28 | |
| TAIR|locus:2095642 | 256 | AT3G21990 "AT3G21990" [Arabido | 0.814 | 0.808 | 0.337 | 8.2e-28 | |
| TAIR|locus:2127323 | 642 | CRK27 "cysteine-rich RLK (RECE | 0.795 | 0.314 | 0.370 | 6.9e-27 | |
| TAIR|locus:2830202 | 260 | AT3G21945 "AT3G21945" [Arabido | 0.818 | 0.8 | 0.321 | 4e-26 |
| TAIR|locus:2166091 AT5G48540 "AT5G48540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 145/231 (62%), Positives = 185/231 (80%)
Query: 17 AADPLGEFCNKDSNVSGNGMISANIDNLLAELVAETAKTGYIAT---SYGKDQDKVFGLA 73
AAD + + CN +SN+S + +S NID+LLA LV++T G+ T SY +++KV+GLA
Sbjct: 20 AADSIWQLCNTNSNISASSQVSKNIDSLLATLVSKTPSKGFKTTTSSSYN-NKEKVYGLA 78
Query: 74 QCRGDVDSKDCASCIQDAAKQIRQRCVNQADARIWYDYCFLRYNTENFVGKVDTSFGIFY 133
QCRGD+ + DC++CIQDAAK+IR+ C NQ+D+RI YD+CFLRY+ ENF+GK+DT G+ Y
Sbjct: 79 QCRGDISNTDCSTCIQDAAKKIREVCQNQSDSRILYDFCFLRYSQENFIGKLDTGAGLIY 138
Query: 134 YNVENVT--DPKSFNKELGALMDEIRSQAVVPKNEGLGKGETTLSPFVTLYALVQCTRDL 191
+NV NVT DPK F+ ELGAL D+IRS+AV+PKN+GLGKG+T L+PFVTL LVQCTRDL
Sbjct: 139 FNVANVTEIDPKKFDNELGALFDKIRSEAVLPKNKGLGKGKTKLTPFVTLNGLVQCTRDL 198
Query: 192 SQIDCAQCLAIAVGNFPNFCNNKKGCRVLYSSCYVRYELYPFFFPLDSKNT 242
S++DCAQC A AVG+F C+NKKGCRVLYSSCYVRYE YPF+FPLD T
Sbjct: 199 SELDCAQCFATAVGSFMTTCHNKKGCRVLYSSCYVRYEFYPFYFPLDPAKT 249
|
|
| TAIR|locus:2095662 AT3G22060 "AT3G22060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2115728 CRK25 "cysteine-rich RLK (RECEPTOR-like protein kinase) 25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2085470 AT3G58310 "AT3G58310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2141762 CRK26 "cysteine-rich RLK (RECEPTOR-like protein kinase) 26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2121676 CRK10 "cysteine-rich RLK (RECEPTOR-like protein kinase) 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2065878 AT2G31620 "AT2G31620" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2095642 AT3G21990 "AT3G21990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2127323 CRK27 "cysteine-rich RLK (RECEPTOR-like protein kinase) 27" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2830202 AT3G21945 "AT3G21945" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00013657001 | SubName- Full=Chromosome undetermined scaffold_522, whole genome shotgun sequence; (262 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 254 | |||
| pfam01657 | 106 | pfam01657, Stress-antifung, Salt stress response/a | 2e-26 | |
| pfam01657 | 106 | pfam01657, Stress-antifung, Salt stress response/a | 1e-24 |
| >gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 2e-26
Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 23 EFCNKDSN---VSGNGMISANIDNLLAELVAETAKT---GYIATSYGKDQDKVFGLAQCR 76
C+ +++ + N +N++ LL+ L + A + G+ A + G D V+GLAQCR
Sbjct: 2 HLCSSNTSGNYTTANSTFESNLNALLSSLSSNAASSSGKGFAAGTSGAAPDTVYGLAQCR 61
Query: 77 GDVDSKDCASCIQDAAKQIRQRCVNQADARIWYDYCFLRYNTENF 121
GD+ + DC SC+ A ++R+ C N+ RIWYD CFLRY + F
Sbjct: 62 GDLSASDCRSCLATAVSELRRCCPNKKGGRIWYDSCFLRYESYPF 106
|
This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106 |
| >gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 254 | |||
| PF01657 | 106 | Stress-antifung: Salt stress response/antifungal; | 99.93 | |
| PF01657 | 106 | Stress-antifung: Salt stress response/antifungal; | 99.92 |
| >PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-26 Score=173.66 Aligned_cols=100 Identities=40% Similarity=0.869 Sum_probs=76.7
Q ss_pred CCCCC-C-CCcc-CCCchHHHHHHHHHHHHHHhhhhc---CcceeecCCCCCeEEEEEEcCCCCCccchHHHHHHHHHHH
Q 036866 22 GEFCN-K-DSNV-SGNGMISANIDNLLAELVAETAKT---GYIATSYGKDQDKVFGLAQCRGDVDSKDCASCIQDAAKQI 95 (254)
Q Consensus 22 ~~~C~-~-~~~~-~~~s~f~~nl~~ll~~L~~~a~~~---~f~~~~~g~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~i 95 (254)
|+.|+ + ++++ +.+++|+++|+.||..|..+++.+ +|++++.|.++++||||+||++|+++++|+.||+.++..+
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 67898 3 3334 566679999999999999998753 8999988888899999999999999999999999999999
Q ss_pred HhhCccCcceEEEcceeEEEecccee
Q 036866 96 RQRCVNQADARIWYDYCFLRYNTENF 121 (254)
Q Consensus 96 ~~~C~~~~ga~i~~~~C~lRYs~~~F 121 (254)
++.|++++||+||+++|+||||+++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999988
|
The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D. |
| >PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 254 | ||||
| 3a2e_A | 108 | Crystal Structure Of Ginkbilobin-2, The Novel Antif | 2e-06 |
| >pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal Protein From Ginkgo Biloba Seeds Length = 108 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 254 | |||
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 1e-25 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 2e-24 |
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 254 | |||
| 3a2e_A | 108 | Ginkbilobin-2; domain 26 unknown function (DUF26), | 99.95 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 99.94 | |
| 3a2e_A | 108 | Ginkbilobin-2; domain 26 unknown function (DUF26), | 99.94 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 99.93 |
| >3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=183.53 Aligned_cols=101 Identities=25% Similarity=0.558 Sum_probs=90.4
Q ss_pred CCCCCCCCCCccCCCchHHHHHHHHHHHHHHhhhhc--CcceeecC-CCCCeEEEEEEcCCCCCccchHHHHHHHHHHHH
Q 036866 20 PLGEFCNKDSNVSGNGMISANIDNLLAELVAETAKT--GYIATSYG-KDQDKVFGLAQCRGDVDSKDCASCIQDAAKQIR 96 (254)
Q Consensus 20 p~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~--~f~~~~~g-~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~i~ 96 (254)
.+++.|++. +++++++|++||+.||..|+++++.+ +|++...+ .++++||||+|||||+++++|+.||+.|+.+++
T Consensus 5 ~v~~~Cn~~-~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~ 83 (108)
T 3a2e_A 5 FVSSACNTQ-KIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRIF 83 (108)
T ss_dssp EEEEEECSS-BCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHH
T ss_pred eeeeecCCC-ccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 467789765 56778899999999999999998765 56666655 456899999999999999999999999999999
Q ss_pred hhCccCcceEEEcceeEEEecccee
Q 036866 97 QRCVNQADARIWYDYCFLRYNTENF 121 (254)
Q Consensus 97 ~~C~~~~ga~i~~~~C~lRYs~~~F 121 (254)
++||+++||+||+++|+||||+++|
T Consensus 84 ~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 84 SICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999987
|
| >3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00