Citrus Sinensis ID: 036913

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MTSNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF
Secondary Structure (PSIPRED)
ccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHcccccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mtsnmenrslfhelpgfekggffdlghplLNRITESFVKAAGIGAIQAVTREAYFTAvegsgfdssnnvsdmgdakkhqfpnlkgetnRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLReargahdwknsaVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF
Flexible Loop (DISEMBL)
MTSNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDmgdakkhqfpnlkgetnrKSLEAMVKNtgkeslqwgvVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF
Low Complexity Region (SEG)
MTSNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF
Disordered region (IsUnstruct)
**********FHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVE*******************************************SLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTG**
Disordered Region (DISOPRED)
***********HELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSG*******************************AMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTID*SSHEQVVQCAITGAAISTAANLLTGIF
Disordered Region (DISEMBL)
MTSNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF
Disordered Region (DISPRO)
*****ENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGS***************************RKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q0WMZ5	178	Outer envelope pore prote	yes	no	0.948	0.938	0.672	8e-61
Q9ZV24	148	Outer envelope pore prote	no	no	0.698	0.831	0.288	1e-13
Q41050	146	Outer envelope pore prote	N/A	no	0.528	0.636	0.322	1e-10

>sp|Q0WMZ5|OP162_ARATH Outer envelope pore protein 16-2, chloroplastic OS=Arabidopsis thaliana GN=OEP162 PE=1 SV=1

 Score =  232 bits (592), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 117/174 (67%), Positives = 146/174 (83%), Gaps = 7/174 (4%)

Query: 8   RSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSN 67
           R +  E+  FEK   FDLGHPLLNRI +SFVKAAG+GA+QAV+REAYFT V+G+GFD SN
Sbjct: 7   RIVMDEIRSFEKAHLFDLGHPLLNRIADSFVKAAGVGALQAVSREAYFTVVDGAGFD-SN 65

Query: 68  NV---SDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLREAR 124
           NV   S++   KKH+FPNL+GE++ KSL+A+VKNTGKESLQWG+ AG+YSG+TYG+ E R
Sbjct: 66  NVGPPSEITGNKKHRFPNLRGESS-KSLDALVKNTGKESLQWGLAAGLYSGITYGMTEVR 124

Query: 125 -GAHDWKNSAVAGAITGVALALTIDD-SSHEQVVQCAITGAAISTAANLLTGIF 176
            GAHDW+NSAVAGA+TG A+A+T  + +SHEQVVQ A+TGAAISTAANLL+ +F
Sbjct: 125 GGAHDWRNSAVAGALTGAAMAMTTSERTSHEQVVQSALTGAAISTAANLLSSVF 178

Voltage-dependent high-conductance channel with a slightly cation-selectivity; selective for amino acids but excludes triosephosphates or uncharged sugars (By similarity). Non-essential amino acid-selective channel protein and translocation pore for NADPH:protochlorophyllide oxidoreductase A (PORA) and possibly PORB.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV24|OP161_ARATH Outer envelope pore protein 16-1, chloroplastic OS=Arabidopsis thaliana GN=OEP161 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 26/149 (17%)

Query: 24  DLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNL 83
           D+G+P LN   ++F+K   +G  +++  + Y  A++                        
Sbjct: 20  DMGNPFLNLTVDAFLKIGAVGVTKSLAEDTY-KAID------------------------ 54

Query: 84  KGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVAL 143
           KG  ++ +LE  +K   KE + WG   G+Y G  YG+   RG+ DWKN+ +AGA TG  L
Sbjct: 55  KGSLSKSTLEHALKKLCKEGVYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGAVL 114

Query: 144 ALTIDDSSHEQVVQCAITGAAISTAANLL 172
           +  +     + +V  AI G A++TA+  +
Sbjct: 115 S-AVGKKGKDTIVIDAILGGALATASQFV 142

Voltage-dependent high-conductance channel with a slightly cation-selectivity; selective for amino acids but excludes triosephosphates or uncharged sugars (By similarity). Non-essential amino acid-selective channel protein and translocation pore for NADPH:protochlorophyllide oxidoreductase A (PORA) and possibly PORB. Involved in PORA precursor (pPORA) import and thus confers photoprotection onto etiolated seedlings during greening.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41050|OEP16_PEA Outer envelope pore protein 16, chloroplastic OS=Pisum sativum GN=OEP16 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 25/118 (21%)

Query: 23  FDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPN 82
            D+G+P LN   + F+K   + A ++V  + +    +GS   SSN+              
Sbjct: 19  IDMGNPFLNLTVDGFLKIGAVAATRSVAEDTFHIIRKGS--ISSNDFE------------ 64

Query: 83  LKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITG 140
                  KSL+ M     KE   WG +AG+Y G+ YG+   RG  DWKN+   GA+TG
Sbjct: 65  -------KSLKKMC----KEGAYWGAIAGVYVGMEYGVERIRGTRDWKNAMFGGAVTG 111

Voltage-dependent high-conductance channel with a slightly cation-selectivity; selective for amino acids but excludes triosephosphates or uncharged sugars. Non-essential amino acid-selective channel protein and translocation pore for NADPH:protochlorophyllide oxidoreductase A (PORA) and possibly PORB.

Pisum sativum (taxid: 3888)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
225431918	177	PREDICTED: uncharacterized protein LOC10	1.0	0.994	0.774	5e-75
255556338	181	protein translocase, putative [Ricinus c	1.0	0.972	0.762	2e-73
356529223	181	PREDICTED: uncharacterized protein LOC10	0.994	0.966	0.761	2e-73
224108667	179	predicted protein [Populus trichocarpa]	1.0	0.983	0.737	1e-71
224101581	179	predicted protein [Populus trichocarpa]	1.0	0.983	0.748	2e-71
351725603	181	uncharacterized protein LOC100305849 [Gl	0.994	0.966	0.744	1e-70
357478941	194	hypothetical protein MTR_4g121900 [Medic	0.988	0.896	0.652	6e-65
356521789	182	PREDICTED: uncharacterized protein LOC10	0.982	0.950	0.706	9e-65
357449009	182	hypothetical protein MTR_2g034550 [Medic	0.994	0.961	0.694	2e-64
359466060	182	plastid OEP16.2 [Pisum sativum]	0.977	0.945	0.672	8e-64

>gi|225431918|ref|XP_002276934.1| PREDICTED: uncharacterized protein LOC100263757 [Vitis vinifera] gi|296083265|emb|CBI22901.3| unnamed protein product [Vitis vinifera]

 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 137/177 (77%), Positives = 159/177 (89%), Gaps = 1/177 (0%)

Query: 1   MTSNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEG 60
           M+SN+E RSL  EL  F+KGGFFDLGHPLLNR  ESFVKAAGIGAIQAV+REAYFTA+EG
Sbjct: 1   MSSNLETRSLLDELRDFDKGGFFDLGHPLLNRFAESFVKAAGIGAIQAVSREAYFTAIEG 60

Query: 61  SGFDSSNNVSDMG-DAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYG 119
           SG +S   V+++    KK +FP+LKGE++RKSLEA+VK+TGKESLQWG+ AG+YSGLTYG
Sbjct: 61  SGLESPGGVTEVTVGGKKQRFPDLKGESSRKSLEALVKSTGKESLQWGLAAGMYSGLTYG 120

Query: 120 LREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF 176
           L+EARGAHDWKNSAVAGA+TGVALALT +D+SHEQ+VQCAITGAAISTAANLLTGIF
Sbjct: 121 LKEARGAHDWKNSAVAGAVTGVALALTSNDTSHEQIVQCAITGAAISTAANLLTGIF 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556338|ref|XP_002519203.1| protein translocase, putative [Ricinus communis] gi|223541518|gb|EEF43067.1| protein translocase, putative [Ricinus communis]

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 138/181 (76%), Positives = 159/181 (87%), Gaps = 5/181 (2%)

Query: 1   MTSNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEG 60
           M++ ++ R+   EL GFEKG  FDLGHPLLNRI ESFVKAAGIGAIQAV+REAYFTA+EG
Sbjct: 1   MSNKLQTRTFMDELRGFEKGWMFDLGHPLLNRIAESFVKAAGIGAIQAVSREAYFTAIEG 60

Query: 61  SGFDSSNNV----SDMGDAKK-HQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSG 115
           SG DSS++V    S  G AKK ++FP+L+GETN KSLEA+VK+TGKES+QWG+ AG+YSG
Sbjct: 61  SGLDSSSSVPPELSPAGAAKKRNRFPDLRGETNGKSLEALVKSTGKESMQWGLAAGVYSG 120

Query: 116 LTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGI 175
           LTYGLREARGAHDWKNSAVAGA+TG+ALALT DD SHEQ+VQCAITGAAISTAANLLTGI
Sbjct: 121 LTYGLREARGAHDWKNSAVAGAVTGMALALTADDVSHEQIVQCAITGAAISTAANLLTGI 180

Query: 176 F 176
           F
Sbjct: 181 F 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529223|ref|XP_003533195.1| PREDICTED: uncharacterized protein LOC100800540 [Glycine max]

 Score =  279 bits (714), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/176 (76%), Positives = 155/176 (88%), Gaps = 1/176 (0%)

Query: 2   TSNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGS 61
           +SN+E RSL  EL  F K G FDLGHPLLNRI E+FVKAAGIGA+QAV+REAYFTA+EG+
Sbjct: 6   SSNLETRSLLDELCNFHKKGLFDLGHPLLNRILETFVKAAGIGAVQAVSREAYFTAIEGT 65

Query: 62  GFDSSNNVS-DMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGL 120
           G D+S  +  ++  AKK++ P+LKGETN KSLEAMVKNTGKESLQWGV AG+Y+GLTYGL
Sbjct: 66  GTDNSGGLPPEISSAKKNRLPSLKGETNNKSLEAMVKNTGKESLQWGVAAGLYAGLTYGL 125

Query: 121 REARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF 176
           +EARGAHDWKNSAVAGAITG  LALT++DS+HEQ+VQCAITGAAISTAANLLTGIF
Sbjct: 126 KEARGAHDWKNSAVAGAITGATLALTLEDSTHEQIVQCAITGAAISTAANLLTGIF 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108667|ref|XP_002314929.1| predicted protein [Populus trichocarpa] gi|222863969|gb|EEF01100.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 132/179 (73%), Positives = 150/179 (83%), Gaps = 3/179 (1%)

Query: 1   MTSNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEG 60
           M+ N+E RS   E+  F+K  FFD GHPLLNRI ESFVKAAGIGAIQAV+REAYFTA+EG
Sbjct: 1   MSHNLETRSFVDEIRHFDKSSFFDFGHPLLNRIAESFVKAAGIGAIQAVSREAYFTAIEG 60

Query: 61  SGFDSSNNVS---DMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
           +G +SS  +     +   K H+FP+L+GETNRKSLEA+V NTGKESLQWG+ AG+YSGLT
Sbjct: 61  AGLESSGGLPAEISVDGKKPHRFPDLRGETNRKSLEALVMNTGKESLQWGLAAGVYSGLT 120

Query: 118 YGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF 176
           YGLRE+RG HDWKNSAVAGAITGVALALT DD SHEQ+VQCAITGAAISTAANLL GIF
Sbjct: 121 YGLRESRGVHDWKNSAVAGAITGVALALTADDKSHEQIVQCAITGAAISTAANLLKGIF 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101581|ref|XP_002312339.1| predicted protein [Populus trichocarpa] gi|222852159|gb|EEE89706.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 134/179 (74%), Positives = 152/179 (84%), Gaps = 3/179 (1%)

Query: 1   MTSNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEG 60
           M+ N+E RSL  E+  F+K  FFD GHPLLNRI ESFVKAAGIGAIQAV+REAYFTA+EG
Sbjct: 1   MSHNLETRSLMGEIRRFDKCCFFDFGHPLLNRIAESFVKAAGIGAIQAVSREAYFTAIEG 60

Query: 61  SGFDSSNNVS---DMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
           SGF+SS  V     +   K+H+ P+L+GETNRKSLEA+V+NTGKESLQWG+ AG+YSGLT
Sbjct: 61  SGFESSGGVPPEISVDGKKRHRAPDLRGETNRKSLEALVRNTGKESLQWGLAAGVYSGLT 120

Query: 118 YGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF 176
           YGL EARG HDWKN+AVAGAITGVALALT  D SHEQ+VQCAITGAAISTAANLLTGIF
Sbjct: 121 YGLSEARGVHDWKNTAVAGAITGVALALTTADISHEQIVQCAITGAAISTAANLLTGIF 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725603|ref|NP_001237610.1| uncharacterized protein LOC100305849 [Glycine max] gi|255626765|gb|ACU13727.1| unknown [Glycine max]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 131/176 (74%), Positives = 153/176 (86%), Gaps = 1/176 (0%)

Query: 2   TSNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGS 61
           +S++E RSL  EL  F K G  DLGHPLLNRI ESFVKAAGIGA+QAV+REAYFTA++G+
Sbjct: 6   SSDLETRSLLDELCNFNKKGLLDLGHPLLNRIFESFVKAAGIGAVQAVSREAYFTAIDGT 65

Query: 62  GFDSSNNVS-DMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGL 120
           G D+S  +  ++  AKK++ P LKGET+ KSLEAMVK+TGKESLQWGV AG+YSGLTYGL
Sbjct: 66  GADNSGGLPPEISSAKKNRLPGLKGETSNKSLEAMVKSTGKESLQWGVAAGLYSGLTYGL 125

Query: 121 REARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF 176
           +EARGAHDWKNSAVAGAITG  LALT++DS+HEQ+VQCAITGAAISTAANLLTGIF
Sbjct: 126 KEARGAHDWKNSAVAGAITGATLALTLEDSTHEQIVQCAITGAAISTAANLLTGIF 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478941|ref|XP_003609756.1| hypothetical protein MTR_4g121900 [Medicago truncatula] gi|355510811|gb|AES91953.1| hypothetical protein MTR_4g121900 [Medicago truncatula]

 Score =  251 bits (642), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 124/190 (65%), Positives = 148/190 (77%), Gaps = 16/190 (8%)

Query: 3   SNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSG 62
           SN+E R+L  EL  F KGG FD GHPL+NRI ESFVKAAGIGA+QAV+REAYFT +EG+G
Sbjct: 5   SNLETRTLLDELSDFNKGGLFDFGHPLVNRIAESFVKAAGIGAVQAVSREAYFTVIEGTG 64

Query: 63  FDSSNNVS-DMGDAKKHQFPNLKGETNRKSLEAMV---------------KNTGKESLQW 106
            D++  +  ++  AKK++F  L+GET+ KS+EAMV               KNTGKES QW
Sbjct: 65  IDNAGGMPPEISGAKKNRFHGLRGETSSKSIEAMVSSCVQESCCLTVAYVKNTGKESFQW 124

Query: 107 GVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAIS 166
           G+ AG+YSGLTYG++EARG HDWKNSAVAGAITG ALA T D++SHEQ+ QCAITGAAIS
Sbjct: 125 GLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALACTSDNTSHEQIAQCAITGAAIS 184

Query: 167 TAANLLTGIF 176
           TAANLLTGIF
Sbjct: 185 TAANLLTGIF 194

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521789|ref|XP_003529533.1| PREDICTED: uncharacterized protein LOC100808144 [Glycine max]

 Score =  251 bits (640), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 123/174 (70%), Positives = 146/174 (83%), Gaps = 1/174 (0%)

Query: 4   NMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGF 63
           N+E RS   E+  F KGG FDLGHPLLNRI ESFVKA+GIGA+QAV+REAYF+AV+G+  
Sbjct: 9   NLETRSPLDEVICFNKGGLFDLGHPLLNRIAESFVKASGIGAVQAVSREAYFSAVDGNRM 68

Query: 64  DSSNNV-SDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLRE 122
           D++  + S++ +AKKH+   L+GET+ KSLEAMVKNTGKESLQWG+ AGIYSGLTYGL+E
Sbjct: 69  DNTGGMPSEVSNAKKHRLHGLRGETSSKSLEAMVKNTGKESLQWGLAAGIYSGLTYGLKE 128

Query: 123 ARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF 176
           ARGA+DWKNSA+AG ITG  LALT  D+S E +V CAITGAAISTAANLLTGIF
Sbjct: 129 ARGANDWKNSAMAGGITGATLALTSGDTSQEHMVHCAITGAAISTAANLLTGIF 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449009|ref|XP_003594780.1| hypothetical protein MTR_2g034550 [Medicago truncatula] gi|87240460|gb|ABD32318.1| Mitochondrial import inner membrane translocase, subunit Tim17/22 [Medicago truncatula] gi|355483828|gb|AES65031.1| hypothetical protein MTR_2g034550 [Medicago truncatula]

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/177 (69%), Positives = 143/177 (80%), Gaps = 2/177 (1%)

Query: 2   TSNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGS 61
           +S +E R+L  E+  F++ G FDLGHPLLNRI ESFVKAAGIGA+QAV+REAYFTA++G 
Sbjct: 6   SSEVETRALLDEICSFDRKGLFDLGHPLLNRIAESFVKAAGIGAVQAVSREAYFTAIDGH 65

Query: 62  GFDSSNNV-SDMGDAKKHQFP-NLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYG 119
             D    +  D+    K + P  L+GET+ KSL+AMV NTGKESLQWGV AGIYSGLTYG
Sbjct: 66  KVDKGGVIPQDVSPTNKRRLPAGLRGETSNKSLDAMVINTGKESLQWGVAAGIYSGLTYG 125

Query: 120 LREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF 176
           L+EARGAHDWKNSAVAGAITG  LALT++DS+HE VVQCAITGAAIST ANLL GIF
Sbjct: 126 LKEARGAHDWKNSAVAGAITGATLALTLEDSTHEHVVQCAITGAAISTVANLLKGIF 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359466060|gb|AEV46836.1| plastid OEP16.2 [Pisum sativum]

 Score =  248 bits (632), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 121/180 (67%), Positives = 148/180 (82%), Gaps = 8/180 (4%)

Query: 2   TSNMENRSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGS 61
           +S +E R++  +L  F++ G FDLGHPL+NRI ESFVKAAGIGA QAV+R+AYF+A++G+
Sbjct: 6   SSEVETRTMLDDLCNFDRKGLFDLGHPLVNRIAESFVKAAGIGAAQAVSRDAYFSAIDGT 65

Query: 62  -----GFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGL 116
                G  +S++VS  G   K + P L+GET+ KSLEAMV + GKESLQWGV AG+YSGL
Sbjct: 66  RTDNNGVKASSDVSATG---KRRLPGLRGETSNKSLEAMVIDAGKESLQWGVAAGLYSGL 122

Query: 117 TYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF 176
           TYGL+EARGAHDWKNSAVAGAITG  LALT++D++HE VVQCAITGAAISTAANLLTGIF
Sbjct: 123 TYGLKEARGAHDWKNSAVAGAITGATLALTMEDTTHEHVVQCAITGAAISTAANLLTGIF 182

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2130135	178	ATOEP16-2 "AT4G16160" [Arabido	0.948	0.938	0.672	1.4e-57
UNIPROTKB|Q41050	146	OEP16 "Outer envelope pore pro	0.5	0.602	0.404	3.6e-20
TAIR|locus:2053185	148	OEP16-1 "outer plastid envelop	0.5	0.594	0.370	2.1e-13
TAIR|locus:2081615	136	ATOEP16-4 "AT3G62880" [Arabido	0.420	0.544	0.368	2.9e-07

TAIR|locus:2130135 ATOEP16-2 "AT4G16160" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 117/174 (67%), Positives = 146/174 (83%)

Query:     8 RSLFHELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSN 67
             R +  E+  FEK   FDLGHPLLNRI +SFVKAAG+GA+QAV+REAYFT V+G+GFDS N
Sbjct:     7 RIVMDEIRSFEKAHLFDLGHPLLNRIADSFVKAAGVGALQAVSREAYFTVVDGAGFDS-N 65

Query:    68 NV---SDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLREAR 124
             NV   S++   KKH+FPNL+GE++ KSL+A+VKNTGKESLQWG+ AG+YSG+TYG+ E R
Sbjct:    66 NVGPPSEITGNKKHRFPNLRGESS-KSLDALVKNTGKESLQWGLAAGLYSGITYGMTEVR 124

Query:   125 G-AHDWKNSAVAGAITGVALALTIDD-SSHEQVVQCAITGAAISTAANLLTGIF 176
             G AHDW+NSAVAGA+TG A+A+T  + +SHEQVVQ A+TGAAISTAANLL+ +F
Sbjct:   125 GGAHDWRNSAVAGALTGAAMAMTTSERTSHEQVVQSALTGAAISTAANLLSSVF 178

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009527 "plastid outer membrane" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IMP

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

UNIPROTKB|Q41050 OEP16 "Outer envelope pore protein 16, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 188 (71.2 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
 Identities = 36/89 (40%), Positives = 51/89 (57%)

Query:    84 KGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVAL 143
             KG  +    E  +K   KE   WG +AG+Y G+ YG+   RG  DWKN+   GA+TG AL
Sbjct:    55 KGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVERIRGTRDWKNAMFGGAVTG-AL 113

Query:   144 ALTIDDSSHEQVVQCAITGAAISTAANLL 172
                  ++  +++   AITGAAI+TAA  +
Sbjct:   114 VSAASNNKKDKIAVDAITGAAIATAAEFI 142

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045037 "protein import into chloroplast stroma" evidence=IDA

TAIR|locus:2053185 OEP16-1 "outer plastid envelope protein 16-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 33/89 (37%), Positives = 51/89 (57%)

Query:    84 KGETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVAL 143
             KG  ++ +LE  +K   KE + WG   G+Y G  YG+   RG+ DWKN+ +AGA TG  L
Sbjct:    55 KGSLSKSTLEHALKKLCKEGVYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGAVL 114

Query:   144 ALTIDDSSHEQVVQCAITGAAISTAANLL 172
             +  +     + +V  AI G A++TA+  +
Sbjct:   115 S-AVGKKGKDTIVIDAILGGALATASQFV 142

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP;RCA

GO:0009749 "response to glucose stimulus" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0009527 "plastid outer membrane" evidence=IDA

GO:0045037 "protein import into chloroplast stroma" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2081615 ATOEP16-4 "AT3G62880" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 28/76 (36%), Positives = 43/76 (56%)

Query:    95 MVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQ 154
             + K+ G+   Q G+V+G+++    GL+  RG +DW N+ V GA+ G A+A  I   +  Q
Sbjct:    52 VAKSIGRFGFQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVA--ISTRNWTQ 109

Query:   155 VVQCAITGAAISTAAN 170
             VV  A   +A S  AN
Sbjct:   110 VVGMAGLVSAFSVLAN 125


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      176       176   0.00081  109 3  11 22  0.44    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  144 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.72u 0.10s 15.82t   Elapsed:  00:00:01
  Total cpu time:  15.72u 0.10s 15.82t   Elapsed:  00:00:01
  Start:  Fri May 10 11:17:55 2013   End:  Fri May 10 11:17:56 2013

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009527 "plastid outer membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WMZ5	OP162_ARATH	No assigned EC number	0.6724	0.9488	0.9382	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	1e-14
TIGR00983	149	TIGR00983, 3a0801s02tim23, mitochondrial import in	6e-04

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score = 66.5 bits (163), Expect = 1e-14
 Identities = 33/147 (22%), Positives = 46/147 (31%), Gaps = 21/147 (14%)

Query: 30  LNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNR 89
             RI         +GA+               G       +      K +          
Sbjct: 3   PERIVYDTGGGFLMGAVYGG----------FFGAPHGLVNALRSGPLKLRL--------N 44

Query: 90  KSLEAMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDD 149
             L A  +        + V  G+YSG+   L + RG  D  NS +AGA+TG  L L    
Sbjct: 45  GVLNATGRRGPSHGNNFAVFGGLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGLR--- 101

Query: 150 SSHEQVVQCAITGAAISTAANLLTGIF 176
              +     A  GAA S A   L  + 
Sbjct: 102 GGPKAAAVGAAVGAAFSAAIEGLGKLL 128

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane translocase subunit tim23

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 107 GVVAGIYSGLTYGLREARGAHDWKNSAVAGAITG 140
           G++A +Y+G+   +   RG HD  NS  AGA+TG
Sbjct: 90  GILALVYNGINSIIEATRGKHDDFNSVAAGALTG 123

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
KOG3225	168	consensus Mitochondrial import inner membrane tran	99.95
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	99.93
PTZ00236	164	mitochondrial import inner membrane translocase su	99.92
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.91
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	99.88
KOG1652	183	consensus Mitochondrial import inner membrane tran	99.86
KOG3324	206	consensus Mitochondrial import inner membrane tran	99.54
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.53
KOG4608	270	consensus Uncharacterized conserved protein [Funct	97.04
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	95.69
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	94.21
KOG4096	75	consensus Uncharacterized conserved protein [Funct	90.75
PF05818	215	TraT: Enterobacterial TraT complement resistance p	82.76

>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.6e-29  Score=200.34  Aligned_cols=138  Identities=21%  Similarity=0.301  Sum_probs=115.9

Q ss_pred             cCCCCCccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHH
Q 036913           13 ELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSL   92 (176)
Q Consensus        13 ~~~~~~~~~~~d~g~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~   92 (176)
                      |.-..++...++.+++|+.|++.+.|.++++|.++++|..+.+.-  +         +|+. ..+        ++.++++
T Consensus        26 ~~~~~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~--~---------~dP~-i~~--------~~ar~q~   85 (168)
T KOG3225|consen   26 EVGDPTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQ--P---------NDPT-IYR--------MPARKQV   85 (168)
T ss_pred             ccCChHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccC--C---------CCCc-hhh--------hhhHHHH
Confidence            444567788899999999999999999999999999999998842  1         1110 111        4555665


Q ss_pred             -HHHHHHhccchhhHHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHH
Q 036913           93 -EAMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANL  171 (176)
Q Consensus        93 -~~~~k~~gk~g~~fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~  171 (176)
                       +++.+.++..+.+|+++|++|+++||.||++|+||||+|++++||+||+.++.|+  ||++.++||++| ++||++||+
T Consensus        86 ~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~~ra--Gp~a~~~G~agf-a~fS~~id~  162 (168)
T KOG3225|consen   86 AKDMGQRSGSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIAGCVTGGSLGYRA--GPKAAAIGCAGF-AAFSAAIDK  162 (168)
T ss_pred             HHHHHhhhcchhhhhhhhhhhehhHHHHHHHHHhhhchhcceeeeeeeccchhhcc--cchhhhhchhHH-HHHHHHHHH
Confidence             5555556666678999999999999999999999999999999999999999999  699999999999 999999998


Q ss_pred             Hc
Q 036913          172 LT  173 (176)
Q Consensus       172 ~~  173 (176)
                      +.
T Consensus       163 y~  164 (168)
T KOG3225|consen  163 YM  164 (168)
T ss_pred             hh
Confidence            74

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=99.93  E-value=1.6e-25  Score=182.79  Aligned_cols=118  Identities=25%  Similarity=0.318  Sum_probs=94.2

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccch--
Q 036913           26 GHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKES--  103 (176)
Q Consensus        26 g~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g--  103 (176)
                      .+||+.|++|++..+..+|++.    ++.+...+|.+|.+.+                      ++++..++.+..++  
T Consensus         6 r~pcp~r~~d~~G~af~~G~~~----G~~~g~~~G~rnsp~g----------------------~rl~g~l~av~~rap~   59 (170)
T TIGR00980         6 REPCPYRILDDFGGAFAMGTIG----GSIFQAFKGFRNSPKG----------------------EKLVGAMRAIKTRAPV   59 (170)
T ss_pred             cCCCcchhHHhhhHHHHHHHHH----HHHHHHHHHhhcCCcc----------------------chhhHHHHHHHhhhhh
Confidence            3899999999999999999988    5555555565544222                      23445666555554  


Q ss_pred             --hhHHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHH
Q 036913          104 --LQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLL  172 (176)
Q Consensus       104 --~~fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~  172 (176)
                        .+||+||++|+++||+++++|+||||||+++|||+||++|+++.  |++ .++++++++++|+++||+.
T Consensus        60 ~g~~Fav~g~lys~~ec~i~~~R~KeD~~NsiiAG~~TGa~l~~r~--G~~-a~~~~aa~gg~~la~ie~~  127 (170)
T TIGR00980        60 LGGNFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAALAVRG--GPR-AMRGSAILGACILAVIEGV  127 (170)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc--ChH-HHHHHHHHHHHHHHHHHHH
Confidence              47999999999999999999999999999999999999999999  565 4555555669999999975

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=99.92  E-value=4e-25  Score=179.52  Aligned_cols=117  Identities=22%  Similarity=0.284  Sum_probs=95.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccchh--
Q 036913           27 HPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESL--  104 (176)
Q Consensus        27 ~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~--  104 (176)
                      +||+.|++|++.-+..+|++.    ++.+..++|.+|+|.|                      ++++..++.+++++.  
T Consensus         9 ~pcp~ri~dd~G~af~~G~vg----G~~~~~~~G~rnsp~g----------------------~rl~g~l~~~~~rap~~   62 (164)
T PTZ00236          9 EPCPDRIIEDMGGAFSMGCIG----GFIWHFLKGMRNSPKG----------------------ERFSGGFYLLRKRAPIL   62 (164)
T ss_pred             CCCchHHHHhccHHHHHHHHH----HHHHHHHHHHHhCCCc----------------------chHHHHHHHHHhhhhhH
Confidence            899999999999999998887    7788888887665433                      245556666665544  


Q ss_pred             --hHHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHH
Q 036913          105 --QWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLL  172 (176)
Q Consensus       105 --~fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~  172 (176)
                        +||+||++|+++||+++++|+||||||+++|||+||++|+++.  |++++ +.++++|+++..+||.+
T Consensus        63 g~~FAv~G~~ys~~ec~~~~~R~K~D~~Nsi~AG~~TGa~l~~r~--G~~~~-~~~a~~Gg~~~~~ie~~  129 (164)
T PTZ00236         63 GGNFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRG--GWRSA-VRNAIFGGILLGIIELV  129 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhc--ChHHH-HHHHHHHHHHHHHHHHH
Confidence              7899999999999999999999999999999999999999999  56644 55666668887777754

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.91  E-value=1.1e-23  Score=160.55  Aligned_cols=124  Identities=27%  Similarity=0.340  Sum_probs=107.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhcc----ch
Q 036913           28 PLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGK----ES  103 (176)
Q Consensus        28 pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk----~g  103 (176)
                      ||+.|+++++++++.+|++++.+.+++.......                      ++.+.+++++.+++.+++    .+
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~   58 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPP----------------------RGSPLRPRLRSILNAVGRRGPRHG   58 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----------------------cCCcHhHHHHHHHHHHhccchHHH
Confidence            7999999999999999999999999985422210                      124566788899999999    77


Q ss_pred             hhHHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHHcccC
Q 036913          104 LQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF  176 (176)
Q Consensus       104 ~~fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~~~~~  176 (176)
                      .+||.++++|+++||.+|++|+|||+||+++||++||++++.+.  +++..+.+++++ ++++.++|+++.+|
T Consensus        59 ~~~g~~~~~y~~~~~~l~~~R~k~D~~N~~~aG~~aGa~~~~~~--g~~~~~~~~~~~-a~~~~~~~~~~~~~  128 (128)
T PF02466_consen   59 ARFGSFGGLYSGIECALERLRGKDDPWNSAIAGAAAGAVLGLRS--GPRGMASGAALG-AAFAAAVEYYGRMP  128 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhcc--ChHHHHHHHHHH-HHHHHHHHHHhccC
Confidence            88999999999999999999999999999999999999999988  577767666655 99999999998765

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=99.88  E-value=7.1e-22  Score=158.18  Aligned_cols=112  Identities=22%  Similarity=0.239  Sum_probs=95.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccchhh--
Q 036913           28 PLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQ--  105 (176)
Q Consensus        28 pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~~--  105 (176)
                      ++...+..+++.+..+|++++++++....            |+              +.+.|.+++.+++++++++..  
T Consensus        33 ~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~------------~~--------------~~~~k~rln~~ln~~~~~g~~~G   86 (149)
T TIGR00983        33 DLCFGTGTCYLTGLAIGALNGLRLGLKET------------QS--------------MPWTKLRLNQILNMVTRRGPFWG   86 (149)
T ss_pred             hhhhhHhHHHHHHHHHHHHHHHHHHHhhC------------CC--------------CCcHHHHHHHHHHHHHhHhHHHH
Confidence            56688999999999999999888777641            11              135678999999999999874  


Q ss_pred             --HHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHH
Q 036913          106 --WGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTA  168 (176)
Q Consensus       106 --fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~a  168 (176)
                        ||+|+++|+++||++|++|+||||+|+++|||+||++++.+.  |+++++++|++. ++++.+
T Consensus        87 ~~~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~--G~r~~~~g~~~G-~~l~~~  148 (149)
T TIGR00983        87 NTLGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTR--GLRGMARSGALG-ATAAGV  148 (149)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHhcc--ChHHHHHHhHHH-HHHhhc
Confidence              569999999999999999999999999999999999999999  699999998876 665543

>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=3.6e-23  Score=169.76  Aligned_cols=123  Identities=27%  Similarity=0.286  Sum_probs=105.3

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccchhh
Q 036913           26 GHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQ  105 (176)
Q Consensus        26 g~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~~  105 (176)
                      ..||+.|+|+++.-.+.+|.+.    ++.|+.++|.+|+|.|       .      ++.|..     ..+..+....+.+
T Consensus         6 r~pcp~riv~d~g~afamg~ig----G~~f~~ikG~~nap~G-------~------r~~gg~-----~av~~~ap~~ggs   63 (183)
T KOG1652|consen    6 REPCPIRIVDDCGGAFAMGTIG----GSVFQLIKGFRNAPSG-------A------RLVGGI-----SAVKMRAPQSGGS   63 (183)
T ss_pred             CCCCCceeeccccchhhhcccc----cceeeeeeeeecCCcc-------c------ccccch-----hhhhccCcccccc
Confidence            4799999999999999999998    8889999999988777       1      222222     3455566677789


Q ss_pred             HHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHHc
Q 036913          106 WGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLT  173 (176)
Q Consensus       106 fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~~  173 (176)
                      |++||++||.+||++..+|+|+|.||++++||+||++|+.+.+   +.+++++|+++++++..+|-+.
T Consensus        64 FAvwgglfSt~dC~Lv~~R~KeDpwNsivsGa~TGg~La~r~g---~~a~~~sa~~~g~~lamieg~g  128 (183)
T KOG1652|consen   64 FAVWGGLFSTVDCALVAIRKKEDPWNSIVSGAATGGLLAARGG---PKAMLTSAITGGLLLAMIEGLG  128 (183)
T ss_pred             eeeeechhhHHHHHHHHHhcccchHHHHHHHhhccceeecccc---HHHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999999999999999999999999999999999994   6678888888899999998653

>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=1.4e-14  Score=120.78  Aligned_cols=86  Identities=26%  Similarity=0.361  Sum_probs=76.2

Q ss_pred             cchHHHHHHHHHHhccchhhHH----HHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHH
Q 036913           86 ETNRKSLEAMVKNTGKESLQWG----VVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAIT  161 (176)
Q Consensus        86 ~~~~~~~~~~~k~~gk~g~~fg----~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~  161 (176)
                      ++.|-+++.+++.++|++..||    +++.+|+++|.+|++.|+||||+|+++||++||+++....  |++++.+++++.
T Consensus       108 ~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGalyrs~~--Glr~~av~ga~g  185 (206)
T KOG3324|consen  108 ASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGALYRSTR--GLRAAAVAGAVG  185 (206)
T ss_pred             CccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhcCC--CchHHHHHHHHH
Confidence            6778899999999999999875    9999999999999999999999999999999999999998  699999999876


Q ss_pred             HHHHHHHHHHHcc
Q 036913          162 GAAISTAANLLTG  174 (176)
Q Consensus       162 gaAfS~aie~~~~  174 (176)
                       +.++.++-..+-
T Consensus       186 -~~aa~aw~l~k~  197 (206)
T KOG3324|consen  186 -GTAAAAWTLGKR  197 (206)
T ss_pred             -HHHHHHHHHhhh
Confidence             666666554443

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=4.1e-15  Score=122.95  Aligned_cols=137  Identities=22%  Similarity=0.197  Sum_probs=99.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CCCCCCCccccccccCCCccccchHHHHHHHHHHhccchh-
Q 036913           28 PLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFD--SSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESL-  104 (176)
Q Consensus        28 pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~--~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~-  104 (176)
                      -|+-.++.+.+++...|...+.+.++......-.-.+  +-|   .+.+--.+.++.   .+.|.+++..++++++++. 
T Consensus        45 ~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg---~vwGgl~~~i~~---~~~r~q~~~~~~n~~~rg~f  118 (191)
T COG5596          45 SCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFG---GVWGGLFSTIDC---TPFRLQLKEQLNNAGKRGFF  118 (191)
T ss_pred             cchhhhhhhcccccccccccccchhhcccccccccccCcccc---ccccceeecccc---chHHHHHhhccccccccccc
Confidence            3666666666666666666666665544211100000  000   000000111222   5778999999999999987 


Q ss_pred             ---hHHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHHc
Q 036913          105 ---QWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLT  173 (176)
Q Consensus       105 ---~fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~~  173 (176)
                         ++|+.|++|+++||.|+..|+||||.|++.+|+.||+.+..+.  +++++.++.+++ +|+|..++..+
T Consensus       119 tG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~--g~qa~~~~~a~~-aa~s~~~~~~~  187 (191)
T COG5596         119 TGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSA--GPQAMPMGGAGF-AAFSAGITLAM  187 (191)
T ss_pred             cccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhc--cccccccCccch-hhhhhhHHhhh
Confidence               6889999999999999999999999999999999999999999  699999999999 99999998754

>KOG4608 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.04  E-value=0.00012  Score=63.61  Aligned_cols=85  Identities=19%  Similarity=0.372  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccchhhHH----HHHHHHhchhhhhhhh
Q 036913           48 AVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWG----VVAGIYSGLTYGLREA  123 (176)
Q Consensus        48 ~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~~fg----~vgglfsg~ec~ie~~  123 (176)
                      ..+..|+.+.++++.    +   +   .-++||     +.-++..+...+..-|.++.||    ++-+.|-++.-.+..|
T Consensus        91 t~s~~A~~~y~~nsq----a---~---ky~sh~-----davk~~~d~air~farGgf~~G~R~alfttSff~l~t~l~vy  155 (270)
T KOG4608|consen   91 TASIHAKQQYIENSQ----A---E---KYHSHF-----DAVKSAHDAAIRGFARGGFRWGWRTALFTTSFFTLNTSLNVY  155 (270)
T ss_pred             hHhHHHHHHHHhccH----H---H---HhhChH-----HHHHHHHHHHHHHHhhccccceeEEeeehhhHHHHHHHHHHH
Confidence            356677777776531    1   1   223333     1222233344555777777665    7888888888899999


Q ss_pred             hhccchhHHHHHHHHHHHHHhhcc
Q 036913          124 RGAHDWKNSAVAGAITGVALALTI  147 (176)
Q Consensus       124 Rgk~D~~Ns~iAGa~TGa~la~~~  147 (176)
                      |+|||.+|=+.||++||+++...-
T Consensus       156 Rgk~a~~~fvaaga~tgsvF~~~~  179 (270)
T KOG4608|consen  156 RGKDALSHFVAAGAVTGSVFRINV  179 (270)
T ss_pred             cCchhhhhhhccccceeeeEEeeh
Confidence            999999999999999999887766

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=95.69  E-value=0.0023  Score=53.64  Aligned_cols=110  Identities=16%  Similarity=0.162  Sum_probs=77.0

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccchhh
Q 036913           26 GHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQ  105 (176)
Q Consensus        26 g~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~~  105 (176)
                      ..||.--....|-+..-++.+.    ++-...++|+++.+.+   +               ....++..-....--.+.+
T Consensus        27 ~d~~~~~~l~~~~~~~~~~~i~----k~~~s~l~G~~~g~~~---g---------------~f~ssl~y~t~~~~~~g~n   84 (191)
T COG5596          27 RDPCPLEKLADFMKAFSYSCIG----KSALSGLKGFRLGGPS---G---------------GFSSSLAYGTGLVHLLGLN   84 (191)
T ss_pred             cCchhhhHHhhhccchhhcchh----hhhhhccccccccccc---c---------------cchhhcccccccccccCcc
Confidence            4799999999999988888776    6777778887643322   1               0111111111222233457


Q ss_pred             HH-HHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCC-CcHHHHHH
Q 036913          106 WG-VVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDD-SSHEQVVQ  157 (176)
Q Consensus       106 fg-~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~-g~~~~~vg  157 (176)
                      || +||++|+.++|..+++|-|.|.||....|..||..++..... -.+..++.
T Consensus        85 fg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~  138 (191)
T COG5596          85 FGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIIT  138 (191)
T ss_pred             ccccccceeeccccchHHHHHhhccccccccccccccccceeeeecccchhhhh
Confidence            77 999999999999999999999999999999999888766541 12344555

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=94.21  E-value=0.18  Score=35.86  Aligned_cols=34  Identities=12%  Similarity=0.209  Sum_probs=31.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036913           27 HPLLNRITESFVKAAGIGAIQAVTREAYFTAVEG   60 (176)
Q Consensus        27 ~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g   60 (176)
                      +.|+.|+-..+.+++.+|.+.+...++|.....+
T Consensus         1 psc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g   34 (67)
T PF10247_consen    1 PSCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYG   34 (67)
T ss_pred             CcHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccC
Confidence            4699999999999999999999999999988866

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

>KOG4096 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.75  E-value=0.48  Score=34.37  Aligned_cols=69  Identities=16%  Similarity=0.272  Sum_probs=51.3

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccchhh
Q 036913           26 GHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQ  105 (176)
Q Consensus        26 g~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~~  105 (176)
                      .+.|..++-..+.+++.+|.+-++.++.|.....|.        +                 .+..++.+-|.|-..+..
T Consensus         4 qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~--------~-----------------g~~~vr~iGkt~~~Sagt   58 (75)
T KOG4096|consen    4 QPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGP--------R-----------------GRGLVRTIGKTMLQSAGT   58 (75)
T ss_pred             CccHHHHHHHHHHHHhhhhhhhhhhccchhheeecC--------C-----------------hhHHHHHHhHHHHhccch
Confidence            467999999999999999999999999999877652        1                 224444555555555667


Q ss_pred             HHHHHHHHhchhhh
Q 036913          106 WGVVAGIYSGLTYG  119 (176)
Q Consensus       106 fg~vgglfsg~ec~  119 (176)
                      ||++=++=+++.|.
T Consensus        59 FG~FM~igs~Ir~~   72 (75)
T KOG4096|consen   59 FGLFMGIGSGIRCG   72 (75)
T ss_pred             hhhhhhhhhheecC
Confidence            88777777777775

>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []

Probab=82.76  E-value=1.9  Score=36.92  Aligned_cols=40  Identities=30%  Similarity=0.410  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHH
Q 036913          132 SAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLL  172 (176)
Q Consensus       132 s~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~  172 (176)
                      ++++|+++|+.++.... +....++|.++.||++..+++.+
T Consensus        89 ga~~Ga~~G~~~g~~~~-~~~g~~~G~GlaGalig~~ada~  128 (215)
T PF05818_consen   89 GALAGAATGAAIGAYNS-GSAGAAIGAGLAGALIGMIADAM  128 (215)
T ss_pred             hHHHHhHHhhhhccccC-CccchhhhhhHHHhHHHHHHhhh
Confidence            45677777777775553 45667888778888899888855

The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00