Citrus Sinensis ID: 036919

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLKGKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLIDNLCVLAFAEHTA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEcHHHHcccccEEcccEEEEEEcccccEEEEEEEEccccccccccEEEEEEEccccccccccccEEEEEEEEEcccEEcccccEEEEcccEEEEEccccccccEEEcc
Secondary Structure Prediction (SSPRO)
cccHcccccccccccccccHHcccccHHHHHHHHHHcHHHHHEHcccccccEEEEEEEccccccEccccEEEEEEEEEccccccccccEEEEEEEEccccEEcccccEEcccccEEEEEccccccccccccc
Coil and Loop (DISEMBL)
GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQRTFIQMRTVLKvadnsgvktvmciqplkgkkvarlGDTIVVSVKEvmpnakvkkgEVVKAVVVRAAMdhgrcdgsfvkfddnaVVLIDNLCVLAFAEHTA
Flexible Loop (DISEMBL)
GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQRTFIQMRTVLKvadnsgvktvmciqplkgkkvarlgDTIVVsvkevmpnakvkkgevVKAVVVRAAMDHGRCDGSFVKFDDNAVVLIDNLCVLAFAEHTA
Low Complexity Region (SEG)
GRsffgglgsllsgllttsHEMASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLKGKKVARLGDTIVVSVKEVMPNakvkkgevvkavvvraaMDHGRCDGSFVKFDDNAVVLIDNLCVLAFAEHTA
Disordered region (IsUnstruct)
***FFGGLGSLLSGLLTTSHEMASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLKGKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLIDNLCVLAFA****
Disordered Region (DISOPRED)
*********************MASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLKGKKVARLGDTIVVSVKEVM****VKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLIDNLCVLAF*****
Disordered Region (DISEMBL)
GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLKGKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLIDNLCVLAFAEHTA
Disordered Region (DISPRO)
*********************MASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLKGKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLIDNL**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLKGKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLIDNLCVLAFAEHTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q2LQB0	122	50S ribosomal protein L14	no	no	0.659	0.713	0.617	7e-23
Q39XZ6	122	50S ribosomal protein L14	yes	no	0.659	0.713	0.573	8e-23
A1ALV1	122	50S ribosomal protein L14	yes	no	0.659	0.713	0.584	1e-22
Q6MJ24	122	50S ribosomal protein L14	yes	no	0.651	0.704	0.602	1e-22
Q57CR8	122	50S ribosomal protein L14	yes	no	0.659	0.713	0.606	3e-22
Q2YRA5	122	50S ribosomal protein L14	yes	no	0.659	0.713	0.606	3e-22
B2S669	122	50S ribosomal protein L14	yes	no	0.659	0.713	0.606	3e-22
A5GAX4	122	50S ribosomal protein L14	yes	no	0.659	0.713	0.595	4e-22
B9M6G8	122	50S ribosomal protein L14	yes	no	0.659	0.713	0.595	4e-22
B9JVP7	122	50S ribosomal protein L14	yes	no	0.659	0.713	0.606	4e-22

>sp|Q2LQB0|RL14_SYNAS 50S ribosomal protein L14 OS=Syntrophus aciditrophicus (strain SB) GN=rplN PE=3 SV=2

 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 69/89 (77%), Gaps = 2/89 (2%)

Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKA 92
            IQM+TVL VADNSG K V CI+ L G  ++ A +GD IVV+VKE MPN+KVKKG+V+KA
Sbjct: 1   MIQMQTVLNVADNSGAKKVACIKVLGGSKRRYAGVGDVIVVAVKEAMPNSKVKKGDVMKA 60

Query: 93  VVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           V+VR A +  R DGS++KFDDN+ VLI N
Sbjct: 61  VIVRTAKEVRRQDGSYLKFDDNSAVLISN 89

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
Syntrophus aciditrophicus (strain SB) (taxid: 56780)

>sp|Q39XZ6|RL14_GEOMG 50S ribosomal protein L14 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplN PE=3 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 70/89 (78%), Gaps = 2/89 (2%)

Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKA 92
            IQM+T+L VADNSG + + CI+ L G  +K A +GD IV SV+E +PN+KVKKG+VVKA
Sbjct: 1   MIQMQTILDVADNSGARKLFCIKVLGGSKRKYAGIGDIIVASVREAIPNSKVKKGDVVKA 60

Query: 93  VVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           V+VR A + GR DGS+++FDDN+ V+I+N
Sbjct: 61  VIVRTAKEVGRLDGSYIRFDDNSAVVINN 89

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)

>sp|A1ALV1|RL14_PELPD 50S ribosomal protein L14 OS=Pelobacter propionicus (strain DSM 2379) GN=rplN PE=3 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 70/89 (78%), Gaps = 2/89 (2%)

Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKA 92
            IQM+T+L VADNSG K + CI+ L G  +K A +GD IV SV+E +PN+KVKKG+VVKA
Sbjct: 1   MIQMQTILDVADNSGAKKLFCIKVLGGSKRKYAGVGDIIVASVREALPNSKVKKGDVVKA 60

Query: 93  VVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           V+VR A + GR DGS+++FDDN+ V+I+N
Sbjct: 61  VIVRTAKELGRPDGSYIRFDDNSGVVINN 89

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Pelobacter propionicus (strain DSM 2379) (taxid: 338966)

>sp|Q6MJ24|RL14_BDEBA 50S ribosomal protein L14 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=rplN PE=3 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 67/88 (76%), Gaps = 2/88 (2%)

Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKA 92
            IQM+T L VADNSG K VMC++ L G  ++VA +GD IVVS+KE +PNAKVKKG+V KA
Sbjct: 1   MIQMQTRLNVADNSGAKEVMCVKVLGGSKRRVASIGDVIVVSIKEALPNAKVKKGDVAKA 60

Query: 93  VVVRAAMDHGRCDGSFVKFDDNAVVLID 120
           VVVR      R DGS+++FDDN+ VLI+
Sbjct: 61  VVVRTVAKLRRPDGSYIRFDDNSAVLIN 88

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) (taxid: 264462)

>sp|Q57CR8|RL14_BRUAB 50S ribosomal protein L14 OS=Brucella abortus biovar 1 (strain 9-941) GN=rplN PE=3 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 67/89 (75%), Gaps = 2/89 (2%)

Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKA 92
            IQM+T L VADNSG + VMCI+ L G  ++ A +GD IVVS+KE +P  +VKKGEV+KA
Sbjct: 1   MIQMQTNLDVADNSGARRVMCIKVLGGSKRRYASVGDIIVVSIKEAIPRGRVKKGEVMKA 60

Query: 93  VVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVVR A D  R DGS ++FD+NA VLIDN
Sbjct: 61  VVVRTAKDIRRPDGSVIRFDNNAAVLIDN 89

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Brucella abortus biovar 1 (strain 9-941) (taxid: 262698)

>sp|Q2YRA5|RL14_BRUA2 50S ribosomal protein L14 OS=Brucella abortus (strain 2308) GN=rplN PE=3 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 67/89 (75%), Gaps = 2/89 (2%)

Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKA 92
            IQM+T L VADNSG + VMCI+ L G  ++ A +GD IVVS+KE +P  +VKKGEV+KA
Sbjct: 1   MIQMQTNLDVADNSGARRVMCIKVLGGSKRRYASVGDIIVVSIKEAIPRGRVKKGEVMKA 60

Query: 93  VVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVVR A D  R DGS ++FD+NA VLIDN
Sbjct: 61  VVVRTAKDIRRPDGSVIRFDNNAAVLIDN 89

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Brucella abortus (strain 2308) (taxid: 359391)

>sp|B2S669|RL14_BRUA1 50S ribosomal protein L14 OS=Brucella abortus (strain S19) GN=rplN PE=3 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 67/89 (75%), Gaps = 2/89 (2%)

Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKA 92
            IQM+T L VADNSG + VMCI+ L G  ++ A +GD IVVS+KE +P  +VKKGEV+KA
Sbjct: 1   MIQMQTNLDVADNSGARRVMCIKVLGGSKRRYASVGDIIVVSIKEAIPRGRVKKGEVMKA 60

Query: 93  VVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVVR A D  R DGS ++FD+NA VLIDN
Sbjct: 61  VVVRTAKDIRRPDGSVIRFDNNAAVLIDN 89

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Brucella abortus (strain S19) (taxid: 430066)

>sp|A5GAX4|RL14_GEOUR 50S ribosomal protein L14 OS=Geobacter uraniireducens (strain Rf4) GN=rplN PE=3 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 69/89 (77%), Gaps = 2/89 (2%)

Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKA 92
            IQM+T+L VADNSG K + CI+ L G  +K A +GD IV SVKE +PN+KVKKG+VVKA
Sbjct: 1   MIQMQTILDVADNSGAKKLFCIKVLGGSKRKYAGIGDIIVASVKEAIPNSKVKKGDVVKA 60

Query: 93  VVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVVR A + GR DGS+++FD N+ V+I+N
Sbjct: 61  VVVRTAKEIGRPDGSYIRFDGNSGVVINN 89

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Geobacter uraniireducens (strain Rf4) (taxid: 351605)

>sp|B9M6G8|RL14_GEOSF 50S ribosomal protein L14 OS=Geobacter sp. (strain FRC-32) GN=rplN PE=3 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 69/89 (77%), Gaps = 2/89 (2%)

Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKA 92
            IQM+T+L VADNSG K + CI+ L G  +K A +GD IV SVKE +PN+KVKKG+VVKA
Sbjct: 1   MIQMQTILDVADNSGAKKLFCIKVLGGSKRKYAGIGDIIVASVKEAIPNSKVKKGDVVKA 60

Query: 93  VVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVVR A + GR DGS+++FD N+ V+I+N
Sbjct: 61  VVVRTAKEIGRPDGSYIRFDGNSGVVINN 89

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Geobacter sp. (strain FRC-32) (taxid: 316067)

>sp|B9JVP7|RL14_AGRVS 50S ribosomal protein L14 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplN PE=3 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 67/89 (75%), Gaps = 2/89 (2%)

Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKA 92
            IQM+T L VADNSG + VMCI+ L G  +K A +GD IVVS+KE +P  +VKKG+V+KA
Sbjct: 1   MIQMQTNLDVADNSGARRVMCIKVLGGSKRKYASVGDIIVVSIKEAIPRGRVKKGDVMKA 60

Query: 93  VVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVVR A D  R DGS ++FD+NA VLIDN
Sbjct: 61  VVVRTAKDIRRADGSVIRFDNNAAVLIDN 89

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Agrobacterium vitis (strain S4 / ATCC BAA-846) (taxid: 311402)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
297740749	166	unnamed protein product [Vitis vinifera]	0.909	0.722	0.766	7e-43
225443920	167	PREDICTED: 50S ribosomal protein L14-lik	0.909	0.718	0.760	2e-41
255570635	166	50S ribosomal protein L14, putative [Ric	0.909	0.722	0.75	4e-37
449490154	166	PREDICTED: 50S ribosomal protein L14-lik	0.909	0.722	0.75	6e-36
224110578	166	predicted protein [Populus trichocarpa]	0.893	0.710	0.737	9e-36
356526999	166	PREDICTED: 50S ribosomal protein L14-lik	0.909	0.722	0.741	1e-35
20260394	172	unknown protein [Arabidopsis thaliana] g	0.901	0.691	0.680	2e-35
357481043	166	50S ribosomal protein L14 [Medicago trun	0.909	0.722	0.725	2e-35
30694900	172	large subunit ribosomal protein L14 [Ara	0.901	0.691	0.680	3e-35
388499272	166	unknown [Medicago truncatula]	0.909	0.722	0.725	3e-35

>gi|297740749|emb|CBI30931.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 92/120 (76%), Positives = 96/120 (80%)

Query: 1   GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLK 60
           GRS FGGLG++ SG L TS +    NFLSQ QRTFIQMRTVLKV DNSG K VMCIQ LK
Sbjct: 13  GRSVFGGLGNISSGSLRTSLDSTWNNFLSQQQRTFIQMRTVLKVVDNSGAKKVMCIQALK 72

Query: 61  GKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLID 120
           GKK ARLGDTIV SVKE  PN KVKKGEVV  VVVRAAM  GRCDGS VKFDDNAVVL+D
Sbjct: 73  GKKGARLGDTIVASVKEAHPNGKVKKGEVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLLD 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443920|ref|XP_002278662.1| PREDICTED: 50S ribosomal protein L14-like [Vitis vinifera]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/121 (76%), Positives = 96/121 (79%), Gaps = 1/121 (0%)

Query: 1   GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQ-RTFIQMRTVLKVADNSGVKTVMCIQPL 59
           GRS FGGLG++ SG L TS +    NFLSQ Q RTFIQMRTVLKV DNSG K VMCIQ L
Sbjct: 13  GRSVFGGLGNISSGSLRTSLDSTWNNFLSQQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 72

Query: 60  KGKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLI 119
           KGKK ARLGDTIV SVKE  PN KVKKGEVV  VVVRAAM  GRCDGS VKFDDNAVVL+
Sbjct: 73  KGKKGARLGDTIVASVKEAHPNGKVKKGEVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLL 132

Query: 120 D 120
           D
Sbjct: 133 D 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570635|ref|XP_002526273.1| 50S ribosomal protein L14, putative [Ricinus communis] gi|223534404|gb|EEF36110.1| 50S ribosomal protein L14, putative [Ricinus communis]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/120 (75%), Positives = 98/120 (81%)

Query: 1   GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLK 60
           GRS  GGLGS LSGL+ TS++M S N++ Q  RTFIQMRTVLKV DNSG K VMCIQ LK
Sbjct: 13  GRSILGGLGSNLSGLMGTSNQMTSSNYMCQQLRTFIQMRTVLKVVDNSGAKKVMCIQALK 72

Query: 61  GKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLID 120
           GKK ARLGDTI+ SVKE MPN KVKKG+VV  VVVRAAM  GRCDGS VKFDDNAVVL+D
Sbjct: 73  GKKGARLGDTIIASVKEAMPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVD 132

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490154|ref|XP_004158523.1| PREDICTED: 50S ribosomal protein L14-like [Cucumis sativus]

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/120 (75%), Positives = 97/120 (80%)

Query: 1   GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLK 60
           GRS  GGLG+ LSG LTTS+E    +F++Q QRTFIQMRTVLKV DNSG K VMCIQ LK
Sbjct: 13  GRSLLGGLGNNLSGSLTTSNETVCNSFITQQQRTFIQMRTVLKVVDNSGAKKVMCIQALK 72

Query: 61  GKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLID 120
           GKK ARLGDTIV SVKE  PN KVKKG+VV  VVVRAAM  GRCDGS VKFDDNAVVL+D
Sbjct: 73  GKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVD 132

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110578|ref|XP_002315564.1| predicted protein [Populus trichocarpa] gi|118484997|gb|ABK94363.1| unknown [Populus trichocarpa] gi|222864604|gb|EEF01735.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 87/118 (73%), Positives = 95/118 (80%)

Query: 3   SFFGGLGSLLSGLLTTSHEMASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLKGK 62
           S F GLG+ +S LL+T+  M   NFLSQ QRTFIQMRTVLKV DNSG K VMCIQPLKG+
Sbjct: 15  SLFRGLGTNVSNLLSTATRMTWSNFLSQHQRTFIQMRTVLKVVDNSGAKKVMCIQPLKGR 74

Query: 63  KVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLID 120
           K ARLGDTI+ SVKE  PN KVKKG VV+ VVVRAAM  GRCDGS VKFDDNAVV+ID
Sbjct: 75  KGARLGDTIIASVKEAAPNGKVKKGAVVRGVVVRAAMQRGRCDGSEVKFDDNAVVIID 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526999|ref|XP_003532102.1| PREDICTED: 50S ribosomal protein L14-like isoform 1 [Glycine max] gi|356527001|ref|XP_003532103.1| PREDICTED: 50S ribosomal protein L14-like isoform 2 [Glycine max] gi|356527003|ref|XP_003532104.1| PREDICTED: 50S ribosomal protein L14-like isoform 3 [Glycine max]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/120 (74%), Positives = 93/120 (77%)

Query: 1   GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLK 60
           GRS FGGL +   GL TT HEM   N  SQ QRTFIQMRTVLKV DNSG K VMCIQ LK
Sbjct: 13  GRSLFGGLSNSSPGLFTTLHEMTCKNMFSQQQRTFIQMRTVLKVVDNSGAKKVMCIQALK 72

Query: 61  GKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLID 120
           GKK ARLGDTI+ SVKE  PN KVKKG+VV  VVVRAAM  GRCDGS VKFDDNAVVL+D
Sbjct: 73  GKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVD 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20260394|gb|AAM13095.1| unknown protein [Arabidopsis thaliana] gi|22136190|gb|AAM91173.1| unknown protein [Arabidopsis thaliana]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/122 (68%), Positives = 93/122 (76%), Gaps = 3/122 (2%)

Query: 1   GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQR-TFIQMRTVLKVADNSGVKTVMCIQPL 59
           GRS  GGL ++  G + +S+ M + + LSQ QR TFIQM TVLKV DNSG K VMCIQ L
Sbjct: 13  GRSLLGGLNNV--GSMNSSNGMMNESILSQQQRRTFIQMGTVLKVVDNSGAKKVMCIQAL 70

Query: 60  KGKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLI 119
           KGKK ARLGDTIV SVKE MPN KVKKG VV  VVVRAAM  GR DGS V+FDDNAVVL+
Sbjct: 71  KGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFDDNAVVLV 130

Query: 120 DN 121
           D+
Sbjct: 131 DS 132

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481043|ref|XP_003610807.1| 50S ribosomal protein L14 [Medicago truncatula] gi|357495181|ref|XP_003617879.1| 50S ribosomal protein L14 [Medicago truncatula] gi|355512142|gb|AES93765.1| 50S ribosomal protein L14 [Medicago truncatula] gi|355519214|gb|AET00838.1| 50S ribosomal protein L14 [Medicago truncatula] gi|388499684|gb|AFK37908.1| unknown [Medicago truncatula]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 92/120 (76%)

Query: 1   GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLK 60
           GRS FGGL +   GL TTSHEM   ++ SQ QRTFIQMRTVLKV DNSG K VMCI+ L 
Sbjct: 13  GRSLFGGLSNSSPGLFTTSHEMTCNSYFSQQQRTFIQMRTVLKVVDNSGAKKVMCIRALA 72

Query: 61  GKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLID 120
           GKK ARLGD I  SVKE  PN KVKKG VV AVVVRAAM  GRCDGS VKFDDNAVVL+D
Sbjct: 73  GKKGARLGDMIQASVKEAHPNGKVKKGAVVFAVVVRAAMPKGRCDGSEVKFDDNAVVLVD 132

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694900|ref|NP_199428.3| large subunit ribosomal protein L14 [Arabidopsis thaliana] gi|332007965|gb|AED95348.1| large subunit ribosomal protein L14 [Arabidopsis thaliana]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/122 (68%), Positives = 92/122 (75%), Gaps = 3/122 (2%)

Query: 1   GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQR-TFIQMRTVLKVADNSGVKTVMCIQPL 59
           GRS  GGL +   G + +S+ M + + LSQ QR TFIQM TVLKV DNSG K VMCIQ L
Sbjct: 13  GRSLLGGLNN--GGSMNSSNGMMNESILSQQQRRTFIQMGTVLKVVDNSGAKKVMCIQAL 70

Query: 60  KGKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLI 119
           KGKK ARLGDTIV SVKE MPN KVKKG VV  VVVRAAM  GR DGS V+FDDNAVVL+
Sbjct: 71  KGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFDDNAVVLV 130

Query: 120 DN 121
           D+
Sbjct: 131 DS 132

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499272|gb|AFK37702.1| unknown [Medicago truncatula]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 92/120 (76%)

Query: 1   GRSFFGGLGSLLSGLLTTSHEMASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLK 60
           GRS FGGL +   GL TTSHEM   ++ SQ QRTFIQMRTVLKV DNSG K VMCI+ L 
Sbjct: 13  GRSLFGGLSNNSPGLFTTSHEMTCNSYFSQQQRTFIQMRTVLKVVDNSGAKKVMCIRALA 72

Query: 61  GKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLID 120
           GKK ARLGD I  SVKE  PN KVKKG VV AVVVRAAM  GRCDGS VKFDDNAVVL+D
Sbjct: 73  GKKGARLGDMIQASVKEAHPNGKVKKGAVVFAVVVRAAMPKGRCDGSEVKFDDNAVVLVD 132

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2161368	173	AT5G46160 [Arabidopsis thalian	0.757	0.578	0.607	1e-25
TAIR|locus:2007913	196	HLL "HUELLENLOS" [Arabidopsis	0.742	0.5	0.477	4.7e-16
TIGR_CMR|GSU_2847	122	GSU_2847 "ribosomal protein L1	0.651	0.704	0.443	6.2e-14
TIGR_CMR|ECH_0419	119	ECH_0419 "ribosomal protein L1	0.651	0.722	0.441	6.4e-12
TIGR_CMR|CBU_0248	122	CBU_0248 "ribosomal protein L1	0.651	0.704	0.409	8.2e-12
TIGR_CMR|CJE_1865	122	CJE_1865 "ribosomal protein L1	0.651	0.704	0.420	1e-11
TIGR_CMR|DET_0484	122	DET_0484 "ribosomal protein L1	0.651	0.704	0.386	1e-11
TIGR_CMR|CHY_2299	122	CHY_2299 "ribosomal protein L1	0.636	0.688	0.406	1.3e-11
TIGR_CMR|SPO_0495	122	SPO_0495 "ribosomal protein L1	0.651	0.704	0.420	1.7e-11
UNIPROTKB|P66069	122	rplN "50S ribosomal protein L1	0.651	0.704	0.388	2.2e-11

TAIR|locus:2161368 AT5G46160 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 62/102 (60%), Positives = 67/102 (65%)

Query:    22 MASCNFLSQLQ--RTFIQMRTVLKVADNSGVKTVMCIQPLKGKKVARLGDTIVVSVKEVM 79
             M + + LSQ Q  RTFIQM TVLKV DNSG K VMCIQ LKGKK ARLGDTIV SVKE M
Sbjct:    32 MMNESILSQQQQRRTFIQMGTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAM 91

Query:    80 PNXXXXXXXXXXXXXXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
             PN                 M  GR DGS V+FDDNAVVL+D+
Sbjct:    92 PNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDS 133

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2007913 HLL "HUELLENLOS" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 53/111 (47%), Positives = 61/111 (54%)

Query:    22 MASCNFLSQLQ-RTFIQMRTVLKVADNSGVKTVMCIQPLKGKKVARLGDTIVVSVKEV-- 78
             M + + LSQ Q RTFIQM T+LK  DNS  K VMCIQ L+GKK ARLGD IV SVKE   
Sbjct:    34 MMNGSILSQQQHRTFIQMGTILKCVDNSCAKEVMCIQSLRGKKGARLGDIIVGSVKEANP 93

Query:    79 ----------MPNXXXXXXXXXXXXXXXXXMDHGRCDGSFVKFDDNAVVLI 119
                       +P                  M  GR DGS VKFDDNA+V++
Sbjct:    94 IVQKKVKKDAIPKGKVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNAIVVV 144

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TIGR_CMR|GSU_2847 GSU_2847 "ribosomal protein L14" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 39/88 (44%), Positives = 54/88 (61%)

Query:    36 IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNXXXXXXXXXXXX 93
             IQM+TVL VADNSG K + CI+ L G  +K A +GD +V SV+E +PN            
Sbjct:     2 IQMQTVLDVADNSGAKKLFCIKVLGGSKRKYAGVGDIVVCSVREAVPNAKVKKGDVVKVV 61

Query:    94 XXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                   + GR DGS+++FDDN+ V+I+N
Sbjct:    62 IVRTAKEIGRPDGSYIRFDDNSGVVINN 89

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|ECH_0419 ECH_0419 "ribosomal protein L14" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 38/86 (44%), Positives = 46/86 (53%)

Query:    36 IQMRTVLKVADNSGVKTVMCIQPLKGKKVARLGDTIVVSVKEVMPNXXXXXXXXXXXXXX 95
             IQ  T+L VADNSG + V+CI  L GKK A +GD IVVS K + P               
Sbjct:     2 IQKNTLLDVADNSGARKVLCIGLLNGKKSASVGDVIVVSTKLITPRGKVSKGKVYKAVIV 61

Query:    96 XXXMDHGRCDGSFVKFDDNAVVLIDN 121
                    R DGS +KF  NAVVLI++
Sbjct:    62 RVKKAVRRLDGSVIKFSSNAVVLIND 87

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|CBU_0248 CBU_0248 "ribosomal protein L14" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 36/88 (40%), Positives = 50/88 (56%)

Query:    36 IQMRTVLKVADNSGVKTVMCIQPLKGKK--VARLGDTIVVSVKEVMPNXXXXXXXXXXXX 93
             IQ ++++ VADNSG + VMCI+ L G K   A +GD I VS+KE +P             
Sbjct:     2 IQTQSIVDVADNSGARRVMCIKVLGGSKRRYANIGDVIKVSIKEAIPRGKVKKGDVMHAV 61

Query:    94 XXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                      R DGS ++FD+NAVVL++N
Sbjct:    62 VVRTRKGVRRNDGSLIRFDNNAVVLLNN 89

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|CJE_1865 CJE_1865 "ribosomal protein L14" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 37/88 (42%), Positives = 49/88 (55%)

Query:    36 IQMRTVLKVADNSGVKTVMCIQPLKGKK--VARLGDTIVVSVKEVMPNXXXXXXXXXXXX 93
             IQ  T L VADNSG K +MCI+ L G K   A +GD IV SVK+ +PN            
Sbjct:     2 IQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVKKALPNGKVKKGQVVKAV 61

Query:    94 XXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                   +  R +GS ++FD+NA V++DN
Sbjct:    62 IVRTKKEIHRDNGSLIRFDENAAVILDN 89

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|DET_0484 DET_0484 "ribosomal protein L14" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 34/88 (38%), Positives = 51/88 (57%)

Query:    36 IQMRTVLKVADNSGVKTVMCIQPLKG-KKV-ARLGDTIVVSVKEVMPNXXXXXXXXXXXX 93
             +Q  T L VADN+G K +MCI  L G +K+ A++GD IV +VK+  P+            
Sbjct:     2 VQQYTRLNVADNTGAKKIMCINVLGGSRKLQAKVGDVIVAAVKKSSPDAQAKSGTVVKAV 61

Query:    94 XXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                    + R DGS++KFDDNA V++++
Sbjct:    62 VVRITKPYARPDGSYIKFDDNAAVILND 89

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|CHY_2299 CHY_2299 "ribosomal protein L14" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 35/86 (40%), Positives = 50/86 (58%)

Query:    36 IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNXXXXXXXXXXXX 93
             IQ++T+L  ADN+G K +MCI+ L G  ++ A LGD IV SVKE  P+            
Sbjct:     2 IQVQTILNSADNTGAKKLMCIRVLGGSNRRYASLGDIIVCSVKEATPDAVVKKGEVVKAV 61

Query:    94 XXXXXMDHGRCDGSFVKFDDNAVVLI 119
                   +  R DG+++KFD+NA V+I
Sbjct:    62 VVRTKKEVRRPDGTYIKFDENAAVII 87

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SPO_0495 SPO_0495 "ribosomal protein L14" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 37/88 (42%), Positives = 50/88 (56%)

Query:    36 IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNXXXXXXXXXXXX 93
             IQM+T L VADNSG + V CI+ L G  +K A +GD IVVSVKE +P             
Sbjct:     2 IQMQTNLDVADNSGARRVQCIKVLGGSKRKYASVGDIIVVSVKEAIPRGRVKKGDVRKAV 61

Query:    94 XXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                   +  R DG+ ++FD NA V+++N
Sbjct:    62 VVRTAKEVRREDGTAIRFDRNAAVILNN 89

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P66069 rplN "50S ribosomal protein L14" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 35/90 (38%), Positives = 51/90 (56%)

Query:    36 IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNXXXXXXXXXXXX 93
             IQ  + LKVADN+G K ++CI+ L G  ++ A +GD IV +VK+ +P             
Sbjct:     2 IQQESRLKVADNTGAKEILCIRVLGGSSRRYAGIGDVIVATVKDAIPGGNVKRGDVVKAV 61

Query:    94 XXXXXMDHGRCDGSFVKFDDNAVVLI--DN 121
                   +  R DGS++KFD+NA V+I  DN
Sbjct:    62 VVRTVKERRRPDGSYIKFDENAAVIIKPDN 91

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B8G6R5	RL14_CHLAD	No assigned EC number	0.5862	0.6439	0.6967	yes	no
Q2K9K6	RL14_RHIEC	No assigned EC number	0.6067	0.6590	0.7131	yes	no
B3E7U5	RL14_GEOLS	No assigned EC number	0.5617	0.6590	0.7131	yes	no
A9W4T0	RL14_METEP	No assigned EC number	0.6067	0.6590	0.7131	yes	no
Q2IJ77	RL14_ANADE	No assigned EC number	0.5730	0.6590	0.7131	yes	no
Q8UE28	RL14_AGRT5	No assigned EC number	0.6067	0.6590	0.7131	yes	no
B3PWT1	RL14_RHIE6	No assigned EC number	0.6067	0.6590	0.7131	yes	no
B8J870	RL14_ANAD2	No assigned EC number	0.5730	0.6590	0.7131	yes	no
B5ZYU5	RL14_RHILW	No assigned EC number	0.6067	0.6590	0.7131	yes	no
B9M6G8	RL14_GEOSF	No assigned EC number	0.5955	0.6590	0.7131	yes	no
A7IFZ1	RL14_XANP2	No assigned EC number	0.55	0.7424	0.6805	yes	no
Q1D765	RL14_MYXXD	No assigned EC number	0.5909	0.6515	0.7049	yes	no
B9JVP7	RL14_AGRVS	No assigned EC number	0.6067	0.6590	0.7131	yes	no
B1Z783	RL14_METPB	No assigned EC number	0.6067	0.6590	0.7131	yes	no
Q5X849	RL14_LEGPA	No assigned EC number	0.5842	0.6590	0.7190	yes	no
Q6MJ24	RL14_BDEBA	No assigned EC number	0.6022	0.6515	0.7049	yes	no
Q98N47	RL14_RHILO	No assigned EC number	0.5955	0.6590	0.7131	yes	no
B1LWR6	RL14_METRJ	No assigned EC number	0.6067	0.6590	0.7131	yes	no
A6X0C8	RL14_OCHA4	No assigned EC number	0.5955	0.6590	0.7131	yes	no
A1USM4	RL14_BARBK	No assigned EC number	0.6067	0.6590	0.7131	yes	no
B8ELF3	RL14_METSB	No assigned EC number	0.6067	0.6590	0.7131	yes	no
Q1MID1	RL14_RHIL3	No assigned EC number	0.6067	0.6590	0.7131	yes	no
A5GAX4	RL14_GEOUR	No assigned EC number	0.5955	0.6590	0.7131	yes	no
A5VQZ6	RL14_BRUO2	No assigned EC number	0.5955	0.6590	0.7131	yes	no
C0RJJ1	RL14_BRUMB	No assigned EC number	0.5955	0.6590	0.7131	yes	no
B2S669	RL14_BRUA1	No assigned EC number	0.6067	0.6590	0.7131	yes	no
Q11HR2	RL14_MESSB	No assigned EC number	0.6067	0.6590	0.7131	yes	no
Q2YRA5	RL14_BRUA2	No assigned EC number	0.6067	0.6590	0.7131	yes	no
Q8G083	RL14_BRUSU	No assigned EC number	0.5955	0.6590	0.7131	yes	no
C3MAZ0	RL14_RHISN	No assigned EC number	0.6067	0.6590	0.7131	yes	no
Q5ZYN3	RL14_LEGPH	No assigned EC number	0.5842	0.6590	0.7190	yes	no
Q6FZD2	RL14_BARQU	No assigned EC number	0.5955	0.6590	0.7131	yes	no
B5EFR0	RL14_GEOBB	No assigned EC number	0.5842	0.6590	0.7131	yes	no
B9JDT8	RL14_AGRRK	No assigned EC number	0.6067	0.6590	0.7131	yes	no
Q1QN20	RL14_NITHX	No assigned EC number	0.5955	0.6590	0.7131	yes	no
Q92QG0	RL14_RHIME	No assigned EC number	0.6067	0.6590	0.7131	yes	no
B4UBA9	RL14_ANASK	No assigned EC number	0.5730	0.6590	0.7131	yes	no
A1ALV1	RL14_PELPD	No assigned EC number	0.5842	0.6590	0.7131	yes	no
Q5WZK2	RL14_LEGPL	No assigned EC number	0.5842	0.6590	0.7190	yes	no
Q8YHN0	RL14_BRUME	No assigned EC number	0.5955	0.6590	0.7131	yes	no
B0CH22	RL14_BRUSI	No assigned EC number	0.5955	0.6590	0.7131	yes	no
C6E4P7	RL14_GEOSM	No assigned EC number	0.5842	0.6590	0.7131	yes	no
A9IW13	RL14_BART1	No assigned EC number	0.5955	0.6590	0.7131	yes	no
A6U869	RL14_SINMW	No assigned EC number	0.6067	0.6590	0.7131	yes	no
B2IK72	RL14_BEII9	No assigned EC number	0.6067	0.6590	0.7131	yes	no
Q39XZ6	RL14_GEOMG	No assigned EC number	0.5730	0.6590	0.7131	yes	no
A9M5P0	RL14_BRUC2	No assigned EC number	0.5955	0.6590	0.7131	yes	no
Q57CR8	RL14_BRUAB	No assigned EC number	0.6067	0.6590	0.7131	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
PRK05483	122	PRK05483, rplN, 50S ribosomal protein L14; Validat	2e-41
pfam00238	122	pfam00238, Ribosomal_L14, Ribosomal protein L14p/L	3e-39
COG0093	122	COG0093, RplN, Ribosomal protein L14 [Translation,	7e-35
TIGR01067	122	TIGR01067, rplN_bact, ribosomal protein L14, bacte	4e-33
CHL00057	122	CHL00057, rpl14, ribosomal protein L14	1e-31
PRK08571	132	PRK08571, rpl14p, 50S ribosomal protein L14P; Revi	7e-18
TIGR03673	131	TIGR03673, rpl14p_arch, 50S ribosomal protein L14P	7e-17
PTZ00054	139	PTZ00054, PTZ00054, 60S ribosomal protein L23; Pro	2e-07

>gnl|CDD|180117 PRK05483, rplN, 50S ribosomal protein L14; Validated

 Score =  133 bits (337), Expect = 2e-41
 Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 2/88 (2%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
           IQ  T L VADNSG K VMCI+ L G  ++ A +GD IVVSVKE +P  KVKKG+VVKAV
Sbjct: 2   IQQETRLNVADNSGAKEVMCIKVLGGSKRRYASIGDVIVVSVKEAIPRGKVKKGDVVKAV 61

Query: 94  VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVR      R DGS+++FDDNA VL++N
Sbjct: 62  VVRTKKGVRRPDGSYIRFDDNAAVLLNN 89

Length = 122

>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e

 Score =  127 bits (323), Expect = 3e-39
 Identities = 54/88 (61%), Positives = 67/88 (76%), Gaps = 2/88 (2%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
           IQ+ T L VADNSG K V CI+ L G  KK A++GD IVVSVK+ +P  KVKKG+VVKAV
Sbjct: 2   IQVGTRLNVADNSGAKKVKCIKVLGGSRKKYAKVGDIIVVSVKKAIPKGKVKKGDVVKAV 61

Query: 94  VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           +VR   +  R DGS+++FDDNAVVLI+N
Sbjct: 62  IVRTKKEVRRKDGSYIRFDDNAVVLINN 89

Length = 122

>gnl|CDD|223171 COG0093, RplN, Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

 Score =  116 bits (293), Expect = 7e-35
 Identities = 51/88 (57%), Positives = 65/88 (73%), Gaps = 2/88 (2%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
           IQ++T L VADNSG K VMCI+ L G  ++ A +GD IVVSVK+ +P   VKKG+VVKAV
Sbjct: 2   IQVQTRLNVADNSGAKEVMCIKVLGGSRRRYAGVGDIIVVSVKKAIPRGMVKKGDVVKAV 61

Query: 94  VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVR   +  R DGS++KFDDNA V+I+ 
Sbjct: 62  VVRTKKEVRRPDGSYIKFDDNAAVIINP 89

Length = 122

>gnl|CDD|130139 TIGR01067, rplN_bact, ribosomal protein L14, bacterial/organelle

 Score =  112 bits (281), Expect = 4e-33
 Identities = 49/88 (55%), Positives = 63/88 (71%), Gaps = 2/88 (2%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
           IQ ++ L VADNSG K V CI+ L G  ++ A +GD IVV VK+ +PN KVKKG+VVKAV
Sbjct: 2   IQQQSRLNVADNSGAKKVQCIKVLGGSRRRYATVGDVIVVVVKDAIPNGKVKKGDVVKAV 61

Query: 94  VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           +VR      R DGS+++FDDNA VLI+ 
Sbjct: 62  IVRTKKGVRRKDGSYIRFDDNACVLINK 89

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 122

>gnl|CDD|176997 CHL00057, rpl14, ribosomal protein L14

 Score =  108 bits (272), Expect = 1e-31
 Identities = 42/88 (47%), Positives = 59/88 (67%), Gaps = 2/88 (2%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
           IQ +T L VADNSG + +MCI+ L    +K A +GD I+  VKE +PN  +K+ EVV+AV
Sbjct: 2   IQPQTYLNVADNSGARKLMCIRVLGASNRKYAHIGDVIIAVVKEAVPNMPLKRSEVVRAV 61

Query: 94  VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           +VR   +  R +G  ++FDDNA V+ID 
Sbjct: 62  IVRTCKELKRDNGMIIRFDDNAAVVIDQ 89

Length = 122

>gnl|CDD|181478 PRK08571, rpl14p, 50S ribosomal protein L14P; Reviewed

 Score = 73.4 bits (181), Expect = 7e-18
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 9/91 (9%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKGKKVAR------LGDTIVVSVKEVMPNAKVKKGEV 89
           + +   L  ADN+G K V  I     K V R      +GD +VVSVK+  P  +    +V
Sbjct: 12  LPVGARLVCADNTGAKEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTPEMR---KQV 68

Query: 90  VKAVVVRAAMDHGRCDGSFVKFDDNAVVLID 120
           ++AVVVR   ++ R DG+ VKF+DNA V++ 
Sbjct: 69  LRAVVVRQRKEYRRPDGTRVKFEDNAAVIVT 99

Length = 132

>gnl|CDD|132712 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P

 Score = 70.8 bits (174), Expect = 7e-17
 Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 9/91 (9%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKGKKVAR------LGDTIVVSVKEVMPNAKVKKGEV 89
           + +  +L  ADN+G K V  I     K V R      +GD +VVSVK+  P  +    +V
Sbjct: 11  LPVGALLVCADNTGAKEVEVISVKGYKGVKRRLPCAGVGDMVVVSVKKGTPEMR---KQV 67

Query: 90  VKAVVVRAAMDHGRCDGSFVKFDDNAVVLID 120
            KAVVVR   ++ R DG+ VKF+DNAVV++ 
Sbjct: 68  FKAVVVRQRKEYRRPDGTRVKFEDNAVVIVT 98

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges. Length = 131

>gnl|CDD|185418 PTZ00054, PTZ00054, 60S ribosomal protein L23; Provisional

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 11/88 (12%)

Query: 41  VLKVADNSGVKTVMCIQPLKGKK-------VARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
           V+  ADNSG K +  I  +KG          A LGD ++ +VK+  P  + K   V+ AV
Sbjct: 24  VVNCADNSGAKNLYIIA-VKGIHGRLNRLPSASLGDMVLATVKKGKPELRKK---VLNAV 79

Query: 94  VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           ++R      R DG F+ F+DNA V+++ 
Sbjct: 80  IIRQRKAWRRKDGVFIYFEDNAGVIVNP 107

Length = 139

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
COG0093	122	RplN Ribosomal protein L14 [Translation, ribosomal	100.0
CHL00057	122	rpl14 ribosomal protein L14	100.0
PRK05483	122	rplN 50S ribosomal protein L14; Validated	100.0
TIGR01067	122	rplN_bact ribosomal protein L14, bacterial/organel	100.0
PTZ00054	139	60S ribosomal protein L23; Provisional	100.0
PRK08571	132	rpl14p 50S ribosomal protein L14P; Reviewed	100.0
TIGR03673	131	rpl14p_arch 50S ribosomal protein L14P. Part of th	100.0
PF00238	122	Ribosomal_L14: Ribosomal protein L14p/L23e; InterP	100.0
PTZ00320	188	ribosomal protein L14; Provisional	100.0
KOG0901	145	consensus 60S ribosomal protein L14/L17/L23 [Trans	99.95
KOG3441	149	consensus Mitochondrial ribosomal protein L14 [Tra	99.73

>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.3e-42  Score=256.55  Aligned_cols=97  Identities=53%  Similarity=0.722  Sum_probs=94.2

Q ss_pred             ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919           35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD  112 (132)
Q Consensus        35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd  112 (132)
                      |||.+|+|+||||||||+++||+++++  |++|.+||+|++|||++.|...+||||+++|||||||++++|+||++|+||
T Consensus         1 miq~~t~l~vADNSGAk~v~~I~V~gg~~r~~A~vGD~ivvsVKka~P~~~vKkg~V~~AViVRtkk~~rR~DGs~i~Fd   80 (122)
T COG0093           1 MIQVQTRLNVADNSGAKEVMCIKVLGGSRRRYAGVGDIIVVSVKKAIPRGMVKKGDVVKAVVVRTKKEVRRPDGSYIKFD   80 (122)
T ss_pred             CcccccEEEEccCCCCcEEEEEEEeccccccccCCCCEEEEEEeeccCCcceeccceEEEEEEEeCCceEcCCCCEEEeC
Confidence            899999999999999999999999986  669999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEcCCCCcceeecc
Q 036919          113 DNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       113 dNAvVLIn~kg~p~~~~~~  131 (132)
                      |||+||+|++|+|+|+|+.
T Consensus        81 dNA~Viin~~g~P~GtrI~   99 (122)
T COG0093          81 DNAAVIINPDGEPRGTRIF   99 (122)
T ss_pred             CceEEEECCCCCcccceEe
Confidence            9999999999999999974

>CHL00057 rpl14 ribosomal protein L14

Probab=100.00  E-value=3.5e-41  Score=251.49  Aligned_cols=97  Identities=43%  Similarity=0.643  Sum_probs=94.2

Q ss_pred             ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919           35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD  112 (132)
Q Consensus        35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd  112 (132)
                      |||.+|+|+|+|||||++++||++|++  +++|++||+|+||||+++|+++++|||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~IvvsVk~~~~~~k~kkg~v~kAvIVrtk~~~~r~dG~~i~F~   80 (122)
T CHL00057          1 MIQPQTYLNVADNSGARKLMCIRVLGASNRKYAHIGDVIIAVVKEAVPNMPLKRSEVVRAVIVRTCKELKRDNGMIIRFD   80 (122)
T ss_pred             CCCcCCEEEEeECCCCcEEEEEEEeCCCCCccccCCCEEEEEEEeccCCCceecCCEEEEEEEEeccccCcCCCcEEEcC
Confidence            999999999999999999999999975  678999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEcCCCCcceeecc
Q 036919          113 DNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       113 dNAvVLIn~kg~p~~~~~~  131 (132)
                      |||+||+|++++|+|+|+.
T Consensus        81 ~Na~VLin~~~~p~GTrI~   99 (122)
T CHL00057         81 DNAAVVIDQEGNPKGTRVF   99 (122)
T ss_pred             CceEEEECCCCCEeEeEEE
Confidence            9999999999999999975

>PRK05483 rplN 50S ribosomal protein L14; Validated

Probab=100.00  E-value=3.5e-41  Score=251.35  Aligned_cols=97  Identities=55%  Similarity=0.747  Sum_probs=94.1

Q ss_pred             ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919           35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD  112 (132)
Q Consensus        35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd  112 (132)
                      |||.+|+|+|+|||||++++||+++++  +++|++||+|+||||++.|+++++|||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~g~~~~~~a~iGD~I~vsVkk~~~~~~~kkg~v~~AvIVrtkk~~~r~dG~~i~F~   80 (122)
T PRK05483          1 MIQQETRLNVADNSGAKEVMCIKVLGGSKRRYASIGDVIVVSVKEAIPRGKVKKGDVVKAVVVRTKKGVRRPDGSYIRFD   80 (122)
T ss_pred             CCCCCCEEEEeECCCCCEEEEEEEeCCCCCCccccCCEEEEEEEEcCCCCcccCCCEeeEEEEEeccceecCCCCEEEcC
Confidence            999999999999999999999999975  568999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEcCCCCcceeecc
Q 036919          113 DNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       113 dNAvVLIn~kg~p~~~~~~  131 (132)
                      |||+||||++++|+|+|+.
T Consensus        81 dNavVLin~~~~p~GTrI~   99 (122)
T PRK05483         81 DNAAVLLNNDGEPRGTRIF   99 (122)
T ss_pred             CCEEEEECCCCCEeEeEEe
Confidence            9999999999999999974

>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle

Probab=100.00  E-value=5.7e-41  Score=250.12  Aligned_cols=97  Identities=51%  Similarity=0.719  Sum_probs=94.1

Q ss_pred             ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919           35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD  112 (132)
Q Consensus        35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd  112 (132)
                      |||.+|+|+|+|||||++++||++|++  +++|++||+|+||||++.|+++++|||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~iGD~I~vsVk~~~~~~~~kkg~v~~AvIVrtkk~~~r~dG~~i~F~   80 (122)
T TIGR01067         1 MIQQQSRLNVADNSGAKKVQCIKVLGGSRRRYATVGDVIVVVVKDAIPNGKVKKGDVVKAVIVRTKKGVRRKDGSYIRFD   80 (122)
T ss_pred             CCCcCCEEEEeECCCCcEEEEEEEeCCCCCCccccCCEEEEEEEEcCCCCccccccEEEEEEEEeecceEeCCCCEEECC
Confidence            999999999999999999999999975  568999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEcCCCCcceeecc
Q 036919          113 DNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       113 dNAvVLIn~kg~p~~~~~~  131 (132)
                      |||+||+|++++|+|+|+.
T Consensus        81 ~Na~VLin~~~~p~GTrI~   99 (122)
T TIGR01067        81 DNACVLINKNKEPRGTRIF   99 (122)
T ss_pred             CceEEEECCCCCEeeeEEE
Confidence            9999999999999999975

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms.

>PTZ00054 60S ribosomal protein L23; Provisional

Probab=100.00  E-value=1.8e-39  Score=247.13  Aligned_cols=94  Identities=31%  Similarity=0.425  Sum_probs=89.3

Q ss_pred             ccccCCeEEEeeccCcceEEEEEeeC---C--e-eeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcE
Q 036919           35 FIQMRTVLKVADNSGVKTVMCIQPLK---G--K-KVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSF  108 (132)
Q Consensus        35 MIq~~T~L~VaDNSGak~v~CI~vl~---g--r-k~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~  108 (132)
                      |||.+|+|+|+|||||++++||++++   +  + ++|++||+|+||||++.|   ++|||+++|||||||++++|+||++
T Consensus        18 mIq~~t~L~vaDNSGAk~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVKk~~p---~~kg~V~kAVIVRtKk~~rR~dGs~   94 (139)
T PTZ00054         18 GLPVGAVVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKP---ELRKKVLNAVIIRQRKAWRRKDGVF   94 (139)
T ss_pred             eecCCCEEEEeeCCCccEEEEEEEeccCcCCccCcccccCCEEEEEEEECCC---cccCCEeeEEEEEECcceEcCCCcE
Confidence            99999999999999999999999996   3  3 579999999999999999   6789999999999999999999999


Q ss_pred             EEeccceEEEEcCCCCcceeecc
Q 036919          109 VKFDDNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       109 IkFddNAvVLIn~kg~p~~~~~~  131 (132)
                      |+|||||+||||++++|+|+|+.
T Consensus        95 i~F~dNA~VLin~~~~p~GTRI~  117 (139)
T PTZ00054         95 IYFEDNAGVIVNPKGEMKGSAIT  117 (139)
T ss_pred             EEeCCcEEEEECCCCCEeeeEEe
Confidence            99999999999999999999974

>PRK08571 rpl14p 50S ribosomal protein L14P; Reviewed

Probab=100.00  E-value=2.9e-39  Score=244.21  Aligned_cols=94  Identities=36%  Similarity=0.405  Sum_probs=88.8

Q ss_pred             ccccCCeEEEeeccCcceEEEEEeeC---C--e-eeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcE
Q 036919           35 FIQMRTVLKVADNSGVKTVMCIQPLK---G--K-KVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSF  108 (132)
Q Consensus        35 MIq~~T~L~VaDNSGak~v~CI~vl~---g--r-k~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~  108 (132)
                      |||.+|+|+|+|||||++++||++++   +  + ++|++||+|+||||++.|   ++|||+++|||||||++++|+||++
T Consensus        11 mIq~~T~L~VaDNSGAk~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVK~~~p---~~kg~v~kAVIVRtkk~~~R~dGs~   87 (132)
T PRK08571         11 GLPVGARLVCADNTGAKEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTP---EMRKQVLRAVVVRQRKEYRRPDGTR   87 (132)
T ss_pred             eecCCCEEEEeeCCCCCeEEEEEEeccCCCCccCCccccCCEEEEEEEECCC---cccCCEeEEEEEEeccceEcCCCcE
Confidence            99999999999999999999999986   2  2 469999999999999999   5689999999999999999999999


Q ss_pred             EEeccceEEEEcCCCCcceeecc
Q 036919          109 VKFDDNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       109 IkFddNAvVLIn~kg~p~~~~~~  131 (132)
                      ++|||||+||||++++|+|+|+.
T Consensus        88 i~F~dNa~VLin~~~~p~GTRI~  110 (132)
T PRK08571         88 VKFEDNAAVIVTPEGTPKGTEIK  110 (132)
T ss_pred             EEeCCcEEEEECCCCCEeeeEEe
Confidence            99999999999999999999974

>TIGR03673 rpl14p_arch 50S ribosomal protein L14P

Probab=100.00  E-value=3.8e-39  Score=243.31  Aligned_cols=95  Identities=38%  Similarity=0.433  Sum_probs=89.1

Q ss_pred             cccccCCeEEEeeccCcceEEEEEeeC---C--e-eeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCc
Q 036919           34 TFIQMRTVLKVADNSGVKTVMCIQPLK---G--K-KVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGS  107 (132)
Q Consensus        34 ~MIq~~T~L~VaDNSGak~v~CI~vl~---g--r-k~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~  107 (132)
                      .|||.+|+|+|+|||||++++||++++   +  + ++|.+||+|+||||++.|   ++|||+++|||||||++++|+||+
T Consensus         9 ~mIq~~t~L~VaDNSGak~v~cI~vl~~~g~~~r~~~a~iGD~IvvsVK~~~p---~~kg~v~kAVIVRtkk~~~R~dGs   85 (131)
T TIGR03673         9 RALPVGSLLVCADNTGAKEVEVISVKGYKGVKRRLPCAGVGDMVVVSVKKGTP---EMRKQVFKAVVVRQRKEYRRPDGT   85 (131)
T ss_pred             eeeccCCEEEEeeCCCCceEEEEEEeeeCCCcccCCccccCCEEEEEEEECCc---cccCCEeEEEEEEeCcceecCCCc
Confidence            399999999999999999999999993   2  3 569999999999999999   568999999999999999999999


Q ss_pred             EEEeccceEEEEcCCCCcceeecc
Q 036919          108 FVKFDDNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       108 ~IkFddNAvVLIn~kg~p~~~~~~  131 (132)
                      +++|||||+||||++++|+|+|+.
T Consensus        86 ~i~FddNa~VLin~~~~P~GTRI~  109 (131)
T TIGR03673        86 RVKFEDNAVVIVTPDGEPKGTEIK  109 (131)
T ss_pred             EEEeCCcEEEEECCCCCEeeeEEE
Confidence            999999999999999999999974

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.

>PF00238 Ribosomal_L14: Ribosomal protein L14p/L23e; InterPro: IPR000218 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=8.9e-39  Score=237.60  Aligned_cols=97  Identities=55%  Similarity=0.704  Sum_probs=91.3

Q ss_pred             ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919           35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD  112 (132)
Q Consensus        35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd  112 (132)
                      |||.+|+|+|+|||||++++||+++++  +++|++||+|++|||+.+|+.+++|||+++|||||||++++|.||++++||
T Consensus         1 MIq~~t~L~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~~~~~vkkg~v~~avIVrtk~~~~r~dg~~i~F~   80 (122)
T PF00238_consen    1 MIQKGTILKVADNSGAKKVKCIKVLGGKRRKYASVGDIIVVSVKKGRPKSKVKKGQVYKAVIVRTKKPIRRKDGSFIKFD   80 (122)
T ss_dssp             -BETTEEEEESBSSSEEEEEEEEETSSTTTSEE-TTSEEEEEEEEE-SSSSSTTTEEEEEEEEECSSEEETTTSEEEEES
T ss_pred             CCCCCCEEEEeeCCCCcEEEEEEEeCCcCccccccceEEEEEEeecccCccccccceEEEEEEEEeEEEEEeCCcEEEeC
Confidence            999999999999999999999999974  679999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEcCCCCcceeecc
Q 036919          113 DNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       113 dNAvVLIn~kg~p~~~~~~  131 (132)
                      |||+||+|++++|+|+|+.
T Consensus        81 ~Na~VLln~~~~p~GtrI~   99 (122)
T PF00238_consen   81 DNAVVLLNKKGNPLGTRIF   99 (122)
T ss_dssp             SEEEEEEETTSSBSSSSBC
T ss_pred             CccEEEEcCCCCEeeeEEE
Confidence            9999999999999999874

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L14 is one of the proteins from the large ribosomal subunit. In eubacteria, L14 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins, which have been grouped on the basis of sequence similarities []. Based on amino-acid sequence homology, it is predicted that ribosomal protein L14 is a member of a recently identified family of structurally related RNA-binding proteins []. L14 is a protein of 119 to 137 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_M 4A1C_J 4A1E_J 4A1A_J 4A17_J 1VSP_I 3D5D_O 1VSA_I 3MRZ_K 3F1F_O ....

>PTZ00320 ribosomal protein L14; Provisional

Probab=100.00  E-value=8.8e-37  Score=241.01  Aligned_cols=95  Identities=21%  Similarity=0.230  Sum_probs=91.2

Q ss_pred             ccCCeEEEeeccCcceEEEEEeeCCeeeeecCcE----EEEEEeeecC------CCcccccceEEEEEEecccccccCCC
Q 036919           37 QMRTVLKVADNSGVKTVMCIQPLKGKKVARLGDT----IVVSVKEVMP------NAKVKKGEVVKAVVVRAAMDHGRCDG  106 (132)
Q Consensus        37 q~~T~L~VaDNSGak~v~CI~vl~grk~a~vGD~----IivsVKk~~p------~~kikKg~V~kAVIVRtKk~~~R~dG  106 (132)
                      .-||+|+|+||||||+++||+++.++++|.+||+    |+||||++.|      ++++|||||++|||||||++++|+||
T Consensus        61 ~~qT~L~VaDNSGAK~V~CIkVl~~rr~A~IGDi~~~~IvVsVKka~P~~~~~~~~kVKKG~V~kAVIVRTKK~irR~DG  140 (188)
T PTZ00320         61 SDQVKLHCVDNTNCKHVRLISKATAERFAHCRVFPAVAHRVSVQRFKSGRGEVSRHRVKPGNIYWVCLLSRRQTNTRMSG  140 (188)
T ss_pred             CCCcEEEEEeCCCCcEEEEEEEecCCCceeeccccCceEEEEEeecccCccccccCceecCCEEEEEEEEECcccCCCCC
Confidence            4589999999999999999999977899999999    9999999999      78999999999999999999999999


Q ss_pred             cEEEeccceEEEEcCCCCcceeecc
Q 036919          107 SFVKFDDNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       107 ~~IkFddNAvVLIn~kg~p~~~~~~  131 (132)
                      ++|+|||||+||||++++|+|+|+.
T Consensus       141 s~IrFDdNAaVLIN~qgePlGTRIf  165 (188)
T PTZ00320        141 LQTNFDRNTCILMNDQRVPLGTRVM  165 (188)
T ss_pred             CEEEeCCcEEEEECCCCCEeeeEEe
Confidence            9999999999999999999999974

>KOG0901 consensus 60S ribosomal protein L14/L17/L23 [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=2.3e-28  Score=187.31  Aligned_cols=99  Identities=37%  Similarity=0.484  Sum_probs=94.0

Q ss_pred             hcccccCCeEEEeeccCcceEEEEEeeC--C----eeeeecCcEEEEEEee--ecCCCcccccceEEEEEEecccccccC
Q 036919           33 RTFIQMRTVLKVADNSGVKTVMCIQPLK--G----KKVARLGDTIVVSVKE--VMPNAKVKKGEVVKAVVVRAAMDHGRC  104 (132)
Q Consensus        33 ~~MIq~~T~L~VaDNSGak~v~CI~vl~--g----rk~a~vGD~IivsVKk--~~p~~kikKg~V~kAVIVRtKk~~~R~  104 (132)
                      ..|||++|.++|+||||||.++||++.+  |    .+.|.+||+|+++||+  ..|+.++|+|+++.|+|||+++++.|.
T Consensus        17 s~~~~~g~~incaDNSgAknL~~isv~g~~Grlnrl~~A~~GD~vva~vKka~~~Pe~r~k~g~~~~avvVr~~k~~~r~   96 (145)
T KOG0901|consen   17 SLGLPVGAVINCADNSGAKNLYCISVKGIKGRLNRLPAAGVGDMVVATVKKAHGKPELRKKVGEVLPAVVVRQKKSKRRK   96 (145)
T ss_pred             hhccccceEEEecCCCCcceEEEEEEeccccccccccCCCcCCEEEEEEecccCCCccCcEecccceeeEEeeccccccC
Confidence            4589999999999999999999999987  5    3589999999999999  799999999999999999999999999


Q ss_pred             CCcEEEeccceEEEEcCCCCcceeecc
Q 036919          105 DGSFVKFDDNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       105 dG~~IkFddNAvVLIn~kg~p~~~~~~  131 (132)
                      ||++++|+|||+|++|+.++|+|++.+
T Consensus        97 dgs~~~f~dnA~v~~~~~~e~~gs~i~  123 (145)
T KOG0901|consen   97 DGSIAYFEDNAGVIVNNKGEPKGSAIT  123 (145)
T ss_pred             CCcEEEEcCceEEEEcccCccccceec
Confidence            999999999999999999999999876

>KOG3441 consensus Mitochondrial ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=5.9e-18  Score=128.56  Aligned_cols=84  Identities=38%  Similarity=0.460  Sum_probs=75.0

Q ss_pred             cccCCeEEEeeccC--------cceEEEEEeeCCeeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCc
Q 036919           36 IQMRTVLKVADNSG--------VKTVMCIQPLKGKKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGS  107 (132)
Q Consensus        36 Iq~~T~L~VaDNSG--------ak~v~CI~vl~grk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~  107 (132)
                      |++.|+|+|+|||.        .+..+||++|+++..+.+||.|+|+||          ||..+|+||....+.++   .
T Consensus        32 I~k~tRlrVVDNSaLGk~a~~~gr~PrCIHVYkkrgvg~~GDkiLvAIk----------GQmkKa~vVGh~~~~k~---~   98 (149)
T KOG3441|consen   32 IHKRTRLRVVDNSALGKEADTTGRLPRCIHVYKKRGVGELGDKILVAIK----------GQMKKAYVVGHVHYRKH---G   98 (149)
T ss_pred             hhhhheEEEecchhhcccccccCCCCceEEEEecccccccccEEEEEEe----------cceeeeEEEEeeccCCC---C
Confidence            55589999999995        378899999998889999999999999          99999999997766554   4


Q ss_pred             EEEeccceEEEEcCCCCcceeeccC
Q 036919          108 FVKFDDNAVVLIDNLCVLAFAEHTA  132 (132)
Q Consensus       108 ~IkFddNAvVLIn~kg~p~~~~~~~  132 (132)
                      ..+||+|.+||||++|+|+|+|.|+
T Consensus        99 ~P~fDsNniVLiddnGnPlGtRI~~  123 (149)
T KOG3441|consen   99 VPVFDSNNIVLIDDNGNPLGTRITA  123 (149)
T ss_pred             CcccCCCcEEEECCCCCcccceEec
Confidence            6899999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
2j01_O	122	Structure Of The Thermus Thermophilus 70s Ribosome		3e-13
2hgj_N	122	Crystal Structure Of The 70s Thermus Thermophilus R		3e-13
3bbo_M	121	Homology Model For The Spinach Chloroplast 50s Subu		2e-10
3ofq_K	122	Crystal Structure Of The E. Coli Ribosome Bound To		3e-10
1p85_I	123	Real Space Refined Coordinates Of The 50s Subunit F		3e-10
2wwq_K	121	E.Coli 70s Ribosome Stalled During Translation Of T		3e-10
2j28_K	121	Model Of E. Coli Srp Bound To 70s Rncs Length = 121		3e-10
2gya_I	122	Structure Of The 50s Subunit Of A Pre-Translocation		3e-10
1c04_D	122	Identification Of Known Protein And Rna Structures		6e-09
1nkw_I	134	Crystal Structure Of The Large Ribosomal Subunit Fr		1e-07
1pnu_I	132	Crystal Structure Of A Streptomycin Dependent Ribos		1e-07

>pdb|2J01|O Chain O, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 122

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKGK--KVARLGDTIVVSVKEVMPNXXXXXXXXXXX 92
            IQ +T L+VADN+G + +MCI+ LKG   K A +GD IV SVKE +P            
Sbjct: 1   MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKA 60
Query: 93  XXXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                  +  R DGS ++FDDNA V+I+N
Sbjct: 61  VVVRTKKEIKRPDGSAIRFDDNAAVIINN 89

>pdb|2HGJ|N Chain N, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 122

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKGK--KVARLGDTIVVSVKEVMPNXXXXXXXXXXX 92
            IQ +T L+VADN+G + +MCI+ LKG   K A +GD IV SVKE +P            
Sbjct: 1   MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKA 60
Query: 93  XXXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                  +  R DGS ++FDDNA V+I+N
Sbjct: 61  VVVRTKKEVKRPDGSAIRFDDNAAVIINN 89

>pdb|3BBO|M Chain M, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 121

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 35  FIQMRTVLKVADNSGVKTVMCIQPL--KGKKVARLGDTIVVSVKEVMPNXXXXXXXXXXX 92
            IQ +T L VADNSG + +MCI+ +    ++ AR+GD IV  +KE +PN           
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
Query: 93  XXXXXXMDHGRCDGSFVKFDDNAVVLID 120
                  +  R +G  +++DDNA V+ID
Sbjct: 61  VVVRTCKELKRDNGMIIRYDDNAAVIID 88

>pdb|3OFQ|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. Length = 122

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNXXXXXXXXXXX 92
            IQ +T+L VADNSG + VMCI+ L G  ++ A +GD I +++KE +P            
Sbjct: 1   MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA 60
Query: 93  XXXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                     R DGS ++FD NA VL++N
Sbjct: 61  VVVRTKKGVRRPDGSVIRFDGNACVLLNN 89

>pdb|1P85|I Chain I, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 123

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNXXXXXXXXXXX 92
            IQ +T+L VADNSG + VMCI+ L G  ++ A +GD I +++KE +P            
Sbjct: 1   MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA 60
Query: 93  XXXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                     R DGS ++FD NA VL++N
Sbjct: 61  VVVRTKKGVRRPDGSVIRFDGNACVLLNN 89

>pdb|2WWQ|K Chain K, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 50s, The P-Site Trna And The Tnac Leader Peptide (Part 2 Of 2) Length = 121

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNXXXXXXXXXXX 92
            IQ +T+L VADNSG + VMCI+ L G  ++ A +GD I +++KE +P            
Sbjct: 1   MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA 60
Query: 93  XXXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                     R DGS ++FD NA VL++N
Sbjct: 61  VVVRTKKGVRRPDGSVIRFDGNACVLLNN 89

>pdb|2J28|K Chain K, Model Of E. Coli Srp Bound To 70s Rncs Length = 121

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNXXXXXXXXXXXX 93
           IQ +T+L VADNSG + VMCI+ L G  ++ A +GD I +++KE +P             
Sbjct: 1   IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60
Query: 94  XXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                    R DGS ++FD NA VL++N
Sbjct: 61  VVRTKKGVRRPDGSVIRFDGNACVLLNN 88

>pdb|2GYA|I Chain I, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 122

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNXXXXXXXXXXXX 93
           IQ +T+L VADNSG + VMCI+ L G  ++ A +GD I +++KE +P             
Sbjct: 1   IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60
Query: 94  XXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                    R DGS ++FD NA VL++N
Sbjct: 61  VVRTKKGVRRPDGSVIRFDGNACVLLNN 88

>pdb|1C04|D Chain D, Identification Of Known Protein And Rna Structures In A 5 A Map Of The Large Ribosomal Subunit From Haloarcula Marismortui Length = 122

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 35  FIQMRTVLKVADNSGVKTVMCIQPL--KGKKVARLGDTIVVSVKEVMPNXXXXXXXXXXX 92
            IQ  + LKVADNSG + V+ I+ L   G++ A +GD +V +VK+  P            
Sbjct: 1   MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKA 60
Query: 93  XXXXXXMDHGRCDGSFVKFDDNAVVLI 119
                     R DGS+++FD+NA V+I
Sbjct: 61  VVVRTKRGVRRPDGSYIRFDENACVII 87

>pdb|1NKW|I Chain I, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 134

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
Query: 35  FIQMRTVLKVADNSGVKTVMCIQPLKG--------------KKVARLGDTIVVSVKEVMP 80
            I  ++ L VADNSG + +MCI+ L                K+ A +GD IV SVK+  P
Sbjct: 1   MIMPQSRLDVADNSGAREIMCIRVLNSGIGGKGLTTGGGGNKRYAHVGDIIVASVKDAAP 60
Query: 81  NXXXXXXXXXXXXXXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                                 R DGS ++FD NA V+I+N
Sbjct: 61  RGAVKAGDVVKAVVVRTSHAIKRADGSTIRFDRNAAVIINN 101

>pdb|1PNU|I Chain I, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 132

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKG--------------KKVARLGDTIVVSVKEVMPN 81
           I  ++ L VADNSG + +MCI+ L                K+ A +GD IV SVK+  P 
Sbjct: 1   IMPQSRLDVADNSGAREIMCIRVLNSGIGGKGLTTGGGGNKRYAHVGDIIVASVKDAAPR 60
Query: 82  XXXXXXXXXXXXXXXXXMDHGRCDGSFVKFDDNAVVLIDN 121
                                R DGS ++FD NA V+I+N
Sbjct: 61  GAVKAGDVVKAVVVRTSHAIKRADGSTIRFDRNAAVIINN 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	3e-26
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	9e-25
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	1e-24
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	1e-24
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	2e-20
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	2e-18

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ... Length = 122

 Score = 94.3 bits (234), Expect = 3e-26
 Identities = 49/88 (55%), Positives = 64/88 (72%), Gaps = 2/88 (2%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
           IQ +T L+VADN+G + +MCI+ LKG   K A +GD IV SVKE +P   VK+G+VVKAV
Sbjct: 2   IQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAV 61

Query: 94  VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVR   +  R DGS ++FDDNA V+I+N
Sbjct: 62  VVRTKKEIKRPDGSAIRFDDNAAVIINN 89

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 121

 Score = 90.5 bits (224), Expect = 9e-25
 Identities = 39/88 (44%), Positives = 60/88 (68%), Gaps = 2/88 (2%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
           IQ +T L VADNSG + +MCI+ +    ++ AR+GD IV  +KE +PN  +++ EV++AV
Sbjct: 2   IQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAV 61

Query: 94  VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVR   +  R +G  +++DDNA V+ID 
Sbjct: 62  VVRTCKELKRDNGMIIRYDDNAAVIIDQ 89

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* 2qao_K* ... Length = 122

 Score = 90.5 bits (224), Expect = 1e-24
 Identities = 46/88 (52%), Positives = 63/88 (71%), Gaps = 2/88 (2%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
           IQ +T+L VADNSG + VMCI+ L G  ++ A +GD I +++KE +P  KVKKG+V+KAV
Sbjct: 2   IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 61

Query: 94  VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVR      R DGS ++FD NA VL++N
Sbjct: 62  VVRTKKGVRRPDGSVIRFDGNACVLLNN 89

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M Length = 122

 Score = 90.1 bits (223), Expect = 1e-24
 Identities = 43/88 (48%), Positives = 60/88 (68%), Gaps = 2/88 (2%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
           IQ  + LKVADNSG + V+ I+ L G  ++ A +GD +V +VK+  P   VKKG+VVKAV
Sbjct: 2   IQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAV 61

Query: 94  VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVR      R DGS+++FD+NA V+I +
Sbjct: 62  VVRTKRGVRRPDGSYIRFDENACVIIRD 89

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J Length = 137

 Score = 79.8 bits (196), Expect = 2e-20
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKGK------KVARLGDTIVVSVKEVMPNAKVKKGEV 89
           + +  ++  ADNSG + +  I              A LGD ++ +VK+  P     + +V
Sbjct: 17  LPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPE---LRKKV 73

Query: 90  VKAVVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           + A+VVR A    R DG F+ F+DNA V+ + 
Sbjct: 74  MPAIVVRQAKSWRRRDGVFLYFEDNAGVIANP 105

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ... Length = 132

 Score = 74.8 bits (183), Expect = 2e-18
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 9/100 (9%)

Query: 28  LSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLKGKK------VARLGDTIVVSVKEVMPN 81
           L       ++  +++  ADN+G + +  I              A LGD I VSV +  P 
Sbjct: 4   LGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE 63

Query: 82  AKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
               + +V++AVVVR      R DG+ VKF+DNA V++D 
Sbjct: 64  ---MRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDE 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	100.0
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	100.0
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	100.0
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	100.0
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	100.0
3j21_J	141	50S ribosomal protein L14P; archaea, archaeal, KIN	100.0
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	100.0

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...

Probab=100.00  E-value=2e-43  Score=262.78  Aligned_cols=97  Identities=51%  Similarity=0.711  Sum_probs=94.8

Q ss_pred             ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919           35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD  112 (132)
Q Consensus        35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd  112 (132)
                      |||.+|+|+|||||||+.++||+++++  +++|++||+|++|||++.|++++||||+++|||||||++++|+||++|+||
T Consensus         1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~i~Fd   80 (122)
T 3v2d_O            1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD   80 (122)
T ss_dssp             CBCTTCEEEECBSSSEEEEEEEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred             CCCCCCEEEEeeCCCCcEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcEEEcC
Confidence            999999999999999999999999987  789999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEcCCCCcceeecc
Q 036919          113 DNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       113 dNAvVLIn~kg~p~~~~~~  131 (132)
                      |||+||||++|+|+|+|+.
T Consensus        81 dNa~Vlin~~~~p~GTrI~   99 (122)
T 3v2d_O           81 DNAAVIINNQLEPRGTRVF   99 (122)
T ss_dssp             SCEEEEECTTSCBSSSCBC
T ss_pred             CcEEEEECCCCCEeeeEEE
Confidence            9999999999999999975

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M

Probab=100.00  E-value=2.7e-43  Score=262.05  Aligned_cols=97  Identities=44%  Similarity=0.635  Sum_probs=95.1

Q ss_pred             ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919           35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD  112 (132)
Q Consensus        35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd  112 (132)
                      |||.+|+|+|||||||+.++||++++|  +++|++||+|++|||++.|++++||||+++|||||||++++|+||++|+||
T Consensus         1 MIq~~t~l~vaDNSGAk~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd   80 (122)
T 1whi_A            1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD   80 (122)
T ss_dssp             CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred             CCCccCEEEEeECCCCcEEEEEEEcCCCcccccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCEEEeC
Confidence            999999999999999999999999997  789999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEcCCCCcceeecc
Q 036919          113 DNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       113 dNAvVLIn~kg~p~~~~~~  131 (132)
                      |||+||||++|+|+|+|++
T Consensus        81 dNa~Vlin~~g~p~GTrI~   99 (122)
T 1whi_A           81 ENACVIIRDDKSPRGTRIF   99 (122)
T ss_dssp             SCEEEEECTTSCBSSSCBC
T ss_pred             CceEEEECCCCCEeeeEEE
Confidence            9999999999999999975

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=2.5e-43  Score=261.99  Aligned_cols=97  Identities=40%  Similarity=0.641  Sum_probs=95.0

Q ss_pred             ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919           35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD  112 (132)
Q Consensus        35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd  112 (132)
                      |||.+|+|+|||||||+.++||++++|  +++|++||+|++|||++.|++++||||+++|||||||++++|+||++|+||
T Consensus         1 MIq~~t~l~vaDNSGAk~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd   80 (121)
T 3bbo_M            1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYD   80 (121)
T ss_dssp             CCCSSCEEEECSSSSEEEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCEECCS
T ss_pred             CCCccCEEEEeeCCCCcEEEEEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCEEEeC
Confidence            999999999999999999999999997  789999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEcCCCCcceeecc
Q 036919          113 DNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       113 dNAvVLIn~kg~p~~~~~~  131 (132)
                      |||+||||++|+|+|+|++
T Consensus        81 dNa~Vlin~~g~p~GTrI~   99 (121)
T 3bbo_M           81 DNAAVIIDQEGNPKGTRIF   99 (121)
T ss_dssp             SCEEEECCTTSSCSSSCCC
T ss_pred             CceEEEECCCCCEeEeEEE
Confidence            9999999999999999975

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...

Probab=100.00  E-value=3.9e-43  Score=261.26  Aligned_cols=97  Identities=47%  Similarity=0.690  Sum_probs=94.7

Q ss_pred             ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919           35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD  112 (132)
Q Consensus        35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd  112 (132)
                      |||.+|+|+|||||||+.++||++|++  +++|++||+|++|||++.|++++||||+++|||||||++++|+||++|+||
T Consensus         1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd   80 (122)
T 3r8s_K            1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFD   80 (122)
T ss_dssp             CBCTTCEEEECBTTSEEEEEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred             CCCCCCEEEEccCCCCceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcEEEcC
Confidence            999999999999999999999999987  678999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEcCC-CCcceeecc
Q 036919          113 DNAVVLIDNL-CVLAFAEHT  131 (132)
Q Consensus       113 dNAvVLIn~k-g~p~~~~~~  131 (132)
                      |||+||||++ |+|+|+|+.
T Consensus        81 dNa~Vlin~~~g~p~GTrI~  100 (122)
T 3r8s_K           81 GNACVLLNNNSEQPIGTRIF  100 (122)
T ss_dssp             SCEEEEEETTTEEESCSCBC
T ss_pred             CceEEEEeCCCCCEeeeEEE
Confidence            9999999999 999999975

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...

Probab=100.00  E-value=3.6e-40  Score=248.13  Aligned_cols=95  Identities=35%  Similarity=0.462  Sum_probs=90.8

Q ss_pred             cccccCCeEEEeeccCcceEEEEEeeC--C--eee--eecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCc
Q 036919           34 TFIQMRTVLKVADNSGVKTVMCIQPLK--G--KKV--ARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGS  107 (132)
Q Consensus        34 ~MIq~~T~L~VaDNSGak~v~CI~vl~--g--rk~--a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~  107 (132)
                      .|||.+|+|+|||||||+.++||++++  |  +++  |.+||+|++|||++.|++   |||+++|||||||++++|+||+
T Consensus        10 ~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~---kg~v~~AVIVRtkk~~rR~dG~   86 (132)
T 1vq8_K           10 QGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDGT   86 (132)
T ss_dssp             CCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTSC
T ss_pred             cccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCC---CCcEEEEEEEEcCCCcCcCCCc
Confidence            599999999999999999999999998  4  456  999999999999999997   6999999999999999999999


Q ss_pred             EEEeccceEEEEcCCCCcceeecc
Q 036919          108 FVKFDDNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       108 ~IkFddNAvVLIn~kg~p~~~~~~  131 (132)
                      +|+|||||+||||++|+|+|+|++
T Consensus        87 ~i~FddNA~Vlin~~g~p~GTrI~  110 (132)
T 1vq8_K           87 RVKFEDNAAVIVDENEDPRGTELK  110 (132)
T ss_dssp             EEEESSCEEEEECTTSCBSSSCBC
T ss_pred             EEEeCCceEEEECCCCCEeEEEEE
Confidence            999999999999999999999975

>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.1e-39  Score=246.28  Aligned_cols=96  Identities=35%  Similarity=0.504  Sum_probs=90.7

Q ss_pred             hcccccCCeEEEeeccCcceEEEEEeeC--C--ee--eeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCC
Q 036919           33 RTFIQMRTVLKVADNSGVKTVMCIQPLK--G--KK--VARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDG  106 (132)
Q Consensus        33 ~~MIq~~T~L~VaDNSGak~v~CI~vl~--g--rk--~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG  106 (132)
                      -.|||.+|+|+|||||||+.++||++++  |  ++  +|.+||+|++|||++.|++   |||+++|||||||++++|+||
T Consensus        18 ~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~---kg~V~kAVIVRtkk~~rR~dG   94 (141)
T 3j21_J           18 TRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDM---RHQVVRAVIIRQRKEYRRLDG   94 (141)
T ss_dssp             CCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTS
T ss_pred             cceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCC---cCceEEEEEEEeCCccCCCCC
Confidence            4799999999999999999999999998  4  33  5999999999999999998   599999999999999999999


Q ss_pred             cEEEeccceEEEEcCCCCcceeecc
Q 036919          107 SFVKFDDNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       107 ~~IkFddNAvVLIn~kg~p~~~~~~  131 (132)
                      ++|+|||||+||||++++|+|+|+.
T Consensus        95 s~i~FddNA~VLin~~g~p~GTRI~  119 (141)
T 3j21_J           95 MRVKFEDNAAVIVTPEGVPRGTEIR  119 (141)
T ss_dssp             CEECCSSCEEEEBCTTSCBCSSCCC
T ss_pred             cEEEcCCcEEEEECCCCCEeeeEEE
Confidence            9999999999999999999999975

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J

Probab=100.00  E-value=1.1e-38  Score=241.44  Aligned_cols=95  Identities=31%  Similarity=0.430  Sum_probs=90.3

Q ss_pred             cccccCCeEEEeeccCcceEEEEEeeCC--e----eeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCc
Q 036919           34 TFIQMRTVLKVADNSGVKTVMCIQPLKG--K----KVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGS  107 (132)
Q Consensus        34 ~MIq~~T~L~VaDNSGak~v~CI~vl~g--r----k~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~  107 (132)
                      .+||++|+|+|||||||+.++||+++++  +    ++|++||+|++|||++.|++   |||+++|||||||++++|+||+
T Consensus        15 ~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~---k~~V~~AVIVRtkk~~rR~dG~   91 (137)
T 3u5e_V           15 LGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPEL---RKKVMPAIVVRQAKSWRRRDGV   91 (137)
T ss_dssp             CCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTT---TTSCEEEEEEECCSCEECTTSC
T ss_pred             ccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCC---CCcEEEEEEEEeccccCcCCCe
Confidence            5799999999999999999999999985  3    48999999999999999998   5899999999999999999999


Q ss_pred             EEEeccceEEEEcCCCCcceeecc
Q 036919          108 FVKFDDNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       108 ~IkFddNAvVLIn~kg~p~~~~~~  131 (132)
                      +|+|||||+||||++++|+|+|+.
T Consensus        92 ~i~FddNA~Vlin~~g~p~GTrI~  115 (137)
T 3u5e_V           92 FLYFEDNAGVIANPKGEMKGSAIT  115 (137)
T ss_dssp             EEEESSCEEEEBCTTCCBSSSCBC
T ss_pred             EEEcCCceEEEECCCCCEeeeEEE
Confidence            999999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d2j01o1	122	b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus	9e-33
d2gyci1	121	b.39.1.1 (I:2-122) Ribosomal protein L14 {Escheric	7e-31
d1whia_	122	b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stea	3e-29
d1vqok1	132	b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon	1e-27

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]} Length = 122

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

 Score =  109 bits (274), Expect = 9e-33
 Identities = 49/88 (55%), Positives = 64/88 (72%), Gaps = 2/88 (2%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKGK--KVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
           IQ +T L+VADN+G + +MCI+ LKG   K A +GD IV SVKE +P   VK+G+VVKAV
Sbjct: 2   IQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAV 61

Query: 94  VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVR   +  R DGS ++FDDNA V+I+N
Sbjct: 62  VVRTKKEIKRPDGSAIRFDDNAAVIINN 89

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]} Length = 121

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (262), Expect = 7e-31
 Identities = 46/88 (52%), Positives = 62/88 (70%), Gaps = 2/88 (2%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKGK--KVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
           IQ +T+L VADNSG + VMCI+ L G   + A +GD I +++KE +P  KVKKG+V+KAV
Sbjct: 1   IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60

Query: 94  VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVR      R DGS ++FD NA VL++N
Sbjct: 61  VVRTKKGVRRPDGSVIRFDGNACVLLNN 88

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]} Length = 122

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  100 bits (252), Expect = 3e-29
 Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 2/88 (2%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKGK--KVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
           IQ  + LKVADNSG + V+ I+ L G   + A +GD +V +VK+  P   VKKG+VVKAV
Sbjct: 2   IQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAV 61

Query: 94  VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           VVR      R DGS+++FD+NA V+I +
Sbjct: 62  VVRTKRGVRRPDGSYIRFDENACVIIRD 89

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 132

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 96.8 bits (241), Expect = 1e-27
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 36  IQMRTVLKVADNSGVKTVMCIQPLKG------KKVARLGDTIVVSVKEVMPNAKVKKGEV 89
           ++  +++  ADN+G + +  I              A LGD I VSV +  P     + +V
Sbjct: 12  LEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE---MRRQV 68

Query: 90  VKAVVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
           ++AVVVR      R DG+ VKF+DNA V++D 
Sbjct: 69  LEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDE 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1whia_	122	Ribosomal protein L14 {Bacillus stearothermophilus	100.0
d2j01o1	122	Ribosomal protein L14 {Thermus thermophilus [TaxId	100.0
d2gyci1	121	Ribosomal protein L14 {Escherichia coli [TaxId: 56	100.0
d1vqok1	132	Ribosomal protein L14 {Archaeon Haloarcula marismo	100.0

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=8.1e-42  Score=251.96  Aligned_cols=97  Identities=44%  Similarity=0.635  Sum_probs=94.4

Q ss_pred             ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919           35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD  112 (132)
Q Consensus        35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd  112 (132)
                      |||++|+|+|+|||||+.++||+++++  +++|.+||+|+||||++.|+++++|||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~dG~~i~F~   80 (122)
T d1whia_           1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD   80 (122)
T ss_dssp             CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred             CCccCcEEEEeeCCCCCEEEEEEEECCCCccccccCCEEEEEEeecccCCeeEcccceeeEEEEEeeeeeccCCceEEeC
Confidence            999999999999999999999999975  679999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEcCCCCcceeecc
Q 036919          113 DNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       113 dNAvVLIn~kg~p~~~~~~  131 (132)
                      |||+||+|++++|+|+|+.
T Consensus        81 ~Na~VLl~~~~~P~GTrI~   99 (122)
T d1whia_          81 ENACVIIRDDKSPRGTRIF   99 (122)
T ss_dssp             SCEEEEECTTSCBSSSCBC
T ss_pred             CCEEEEECCCCCEeeeeEe
Confidence            9999999999999999975

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-41  Score=250.76  Aligned_cols=97  Identities=51%  Similarity=0.711  Sum_probs=94.4

Q ss_pred             ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919           35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD  112 (132)
Q Consensus        35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd  112 (132)
                      |||++|+|+|+|||||+.++||+++++  +++|.+||+|+||||+++|+++++|||+++|||||||++++|.||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~~~~~vkkg~v~~AvIVrtkk~~~r~dG~~i~F~   80 (122)
T d2j01o1           1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD   80 (122)
T ss_dssp             CCCTTCEEEECSSSSCCEEEEEEECSSTTCCCCCTTCEEEEEEEECCTTCSSCSSCEEEEEEEECSSCEECTTSCEEECS
T ss_pred             CCccCcEEEEeeCCCCcEEEEEEEeCCCCCcccccCcEEEEEEeecccCCccccCcCcceeEEeeecceEcCCCCEEEcC
Confidence            999999999999999999999999975  678999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEcCCCCcceeecc
Q 036919          113 DNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       113 dNAvVLIn~kg~p~~~~~~  131 (132)
                      |||+||+|++++|+|+|..
T Consensus        81 ~Na~VLl~~~~~p~GTrI~   99 (122)
T d2j01o1          81 DNAAVIINNQLEPRGTRVF   99 (122)
T ss_dssp             SCEEEEECTTSCCSSSCCC
T ss_pred             CCEEEEECCCCCEeeeEEe
Confidence            9999999999999999975

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-40  Score=243.53  Aligned_cols=96  Identities=48%  Similarity=0.702  Sum_probs=92.3

Q ss_pred             cccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEecc
Q 036919           36 IQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDD  113 (132)
Q Consensus        36 Iq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFdd  113 (132)
                      ||.+|+|+|+|||||+.++||+++++  +++|.+||+|+||||++.|+++++|||+++|||||||++++|+||++++|||
T Consensus         1 IQ~~S~l~v~DNSGak~v~cI~vl~~~~~~~a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~dG~~i~F~~   80 (121)
T d2gyci1           1 IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDG   80 (121)
T ss_dssp             CCTTCEEEECSCSSBCEEEEEEETTCCSSSCCCTTCEEEECCCSBCSSSSCCTTCCEEEEEEECSSCEECTTSCEECCSS
T ss_pred             CCcCCeEEEeeCCCccEEEEEEEeCCCCCccCccCcEEEEEEEEccCCCccccccEEEEEEEEEeeeEeccCCeEEEeCC
Confidence            79999999999999999999999975  6789999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEcCCC-Ccceeecc
Q 036919          114 NAVVLIDNLC-VLAFAEHT  131 (132)
Q Consensus       114 NAvVLIn~kg-~p~~~~~~  131 (132)
                      ||+||||+++ +|+|+|..
T Consensus        81 Na~VLi~~~~~~p~GTrI~   99 (121)
T d2gyci1          81 NACVLLNNNSEQPIGTRIF   99 (121)
T ss_dssp             CEEEEECSSSSCBSSSCCC
T ss_pred             CEEEEEcCCCCCcccCeEE
Confidence            9999999998 69999874

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=5.9e-38  Score=234.09  Aligned_cols=96  Identities=33%  Similarity=0.386  Sum_probs=89.7

Q ss_pred             hcccccCCeEEEeeccCcceEEEEEeeCC------eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCC
Q 036919           33 RTFIQMRTVLKVADNSGVKTVMCIQPLKG------KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDG  106 (132)
Q Consensus        33 ~~MIq~~T~L~VaDNSGak~v~CI~vl~g------rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG  106 (132)
                      .+|||.+|+|+|+|||||+.++||+++++      +++|.+||+|+||||++.|+.   ||++++|||||||++++|+||
T Consensus         9 ~~~Iq~~s~L~v~DNSGak~v~cI~V~~~~~~k~r~~~a~vGD~IvvsVk~~~~~~---k~~v~~AvIVrtkk~~~R~dG   85 (132)
T d1vqok1           9 TQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDG   85 (132)
T ss_dssp             CCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTS
T ss_pred             cccccccCEEEEeeCCCCceEEEEEEeccccccccccccccceEEEEEEeecCCCc---ccceEEEEEEEecCcEECCCC
Confidence            36899999999999999999999999963      236999999999999999984   799999999999999999999


Q ss_pred             cEEEeccceEEEEcCCCCcceeecc
Q 036919          107 SFVKFDDNAVVLIDNLCVLAFAEHT  131 (132)
Q Consensus       107 ~~IkFddNAvVLIn~kg~p~~~~~~  131 (132)
                      ++++|||||+||+|++++|+|+|..
T Consensus        86 ~~i~FddNa~VLi~~~~~p~GTRI~  110 (132)
T d1vqok1          86 TRVKFEDNAAVIVDENEDPRGTELK  110 (132)
T ss_dssp             CEEEESSCEEEEECTTSCBSSSCBC
T ss_pred             CEEEcCCCEEEEECCCCCEeeeEEe
Confidence            9999999999999999999999975