Citrus Sinensis ID: 036932

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790
Protein Sequence
MPTSVGPKLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTEEVPATTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQWFYFIDA
Secondary Structure (PSIPRED)
cccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEccccccccccHHHHccccccEEEcccccccccccHHHHcccccccEEEccccccEEEccccccccccccEEEcccccccEEcccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccEEEccHHHHHccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEcccccccccccccEEEccccccEEcccccccccccccEEcccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccEEEEccccccccEEEEcccccccccccHHHHHccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHcccccHHHcEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEcccccccccccHHHcccccccEEEcccccccccHHHcccccccEEEEEEEEEcccHHHcccccccEEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEEEccccccccccHHHccccHHHHHHHHcccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccHHHHHHHcccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHHHHHccEEEcccccccccccHHHccccccEEEEcccccccccccHHccccccEEEEEcEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHcccHHHHEEEccccccccccccccccccccHHHcccccccccccccccccccHEEHccccccccccccccccccEEEEEcccccccccccHHHcccEEEEEEcccccccccccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccc
Coil and Loop (DISEMBL)
mptsvgpkleqrsnkwlfnnasNILFFIVVGFanltnlkildlsgcgittlqgltklknlealdlsynnisgssesqgvcelKNLSEFILRGinikghlpdCLKNLSHLKVLDISynqlsgtlpsaiTTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRtnmlsvktenflptfqlkvlglpnynlkvipsfllhqydlklldlsgnnlvgdfptwvlrnnTKLEALFLtnnsftgnlqlpktkhdflhhldvsnnnltgklpeDMGIILQKLLYIdmsdnrfegylpssiGEMKALIFLrlpknnfsgelpaplltgcislglldlsgnnfygqifpkymnltQLEFLYLENnkfsgkieeglsnsnelneldisnnllsghiphwigNFSSDLKVLLMSKMFlkgnipaqllnhgslnllsvsenclsgpmtssfnlsSLEHLYLQMNslsgpipialfrssnlitldlrdnrfsgviphqiseSLTLRFLLLRGnylegqipnqlcqlrrlgvldlshnrisgsipsCLTIMLLWVAGnvylhepylqFFSAIFVGSigtyynstfhfghygngvysiFPQLVKVEFMTKNRyelyngsnikyMVGLDLscnqltggipseigdlQIRGLNLSYNflsgsipgsfsnlkwiesldlshnrlsgqvpprltelnflsnfnvsfnnlsglipdkgqfatfdessyrgnlhlcgptinkscnsteevpattsiqgevedecaIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQWFYFIDA
Flexible Loop (DISEMBL)
mptsvgpkleqrsnKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSnnnltgklpEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTEEVPAttsiqgevedECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQWFYFIDA
Low Complexity Region (SEG)
MPTSVGPKLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFllhqydlklldlSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIeeglsnsnelneldisnnllsGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTElnflsnfnvsfnnlsGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTEEVPATTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQWFYFIDA
Disordered region (IsUnstruct)
**************KWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISG***SQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIE********LNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCN******ATTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQWFYFI**
Disordered Region (DISOPRED)
MPTSVGPKLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGN*YLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPT****************************TVSLYWSFGASYVTVILGLFAILWINSNWRRQWFYFIDA
Disordered Region (DISEMBL)
*********EQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCN**********IQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQWFYFIDA
Disordered Region (DISPRO)
MPTSVGPKLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSC******************ECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQWFYFIDA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPTSVGPKLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTEEVPATTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQWFYFIDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	790	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.827	0.523	0.322	6e-71
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.831	0.524	0.313	2e-66
Q9FL28	1173	LRR receptor-like serine/	no	no	0.802	0.540	0.323	8e-66
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.751	0.496	0.318	4e-58
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.892	0.584	0.320	4e-58
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.892	0.584	0.320	7e-58
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.791	0.536	0.304	4e-57
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.811	0.537	0.306	1e-55
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.841	0.585	0.319	8e-55
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.782	0.561	0.306	6e-54

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  269 bits (688), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 239/741 (32%), Positives = 364/741 (49%), Gaps = 87/741 (11%)

Query: 32  FANLTNLKILDLSGCGIT--TLQGLTKLKNLEALDLSYNNISGSSESQ-GVCELKNLSEF 88
             NL NL++L L+ C +T      L +L  +++L L  N + G   ++ G C   +L+ F
Sbjct: 163 LGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNC--SDLTVF 220

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
                 + G +P  L  L +L++L+++ N L+G +PS +  ++ L+YL+L+ N  +G  +
Sbjct: 221 TAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQG-LI 279

Query: 149 LNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKL 208
             SLA+   L+ L LS+  N+     E F    QL  L L N                  
Sbjct: 280 PKSLADLGNLQTLDLSA-NNLTGEIPEEFWNMSQLLDLVLAN------------------ 320

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGK 268
                N+L G  P  +  NNT LE L L+    +G + +  +K   L  LD+SNN+L G 
Sbjct: 321 -----NHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGS 375

Query: 269 LPEDM-----------------GII------LQKLLYIDMSDNRFEGYLPSSIGEMKALI 305
           +PE +                 G +      L  L ++ +  N  EG LP  I  ++ L 
Sbjct: 376 IPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLE 435

Query: 306 FLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSG 365
            L L +N FSGE+P  +   C SL ++D+ GN+F G+I P    L +L  L+L  N+  G
Sbjct: 436 VLFLYENRFSGEIPQEI-GNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVG 494

Query: 366 KIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGS 425
            +   L N ++LN LD+++N LSG IP   G F   L+ L++    L+GN+P  L++  +
Sbjct: 495 GLPASLGNCHQLNILDLADNQLSGSIPSSFG-FLKGLEQLMLYNNSLQGNLPDSLISLRN 553

Query: 426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSG 485
           L  +++S N L+G +      SS     +  N     IP+ L  S NL  L L  N+ +G
Sbjct: 554 LTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTG 613

Query: 486 VIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLW 545
            IP  + +   L  L +  N L G IP QL   ++L  +DL++N +SG IP        W
Sbjct: 614 KIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPP-------W 666

Query: 546 VAGNVYLHEPYLQFFSAIFVGSIGT-YYNST--FHFGHYGNGVYSIFPQLV------KVE 596
           +     L E  L+  S  FV S+ T  +N T        GN +    PQ +       V 
Sbjct: 667 LGKLSQLGE--LKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVL 724

Query: 597 FMTKNRYELYNGS------NIKYMVGLDLSCNQLTGGIPSEIGDLQ--IRGLNLSYNFLS 648
            + KN+   ++GS       +  +  L LS N LTG IP EIG LQ     L+LSYN  +
Sbjct: 725 NLDKNQ---FSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFT 781

Query: 649 GSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATF 708
           G IP +   L  +E+LDLSHN+L+G+VP  + ++  L   NVSFNNL G +  K QF+ +
Sbjct: 782 GDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRW 839

Query: 709 DESSYRGNLHLCGPTINKSCN 729
              S+ GN  LCG  +++ CN
Sbjct: 840 PADSFLGNTGLCGSPLSR-CN 859

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  254 bits (650), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 231/738 (31%), Positives = 348/738 (47%), Gaps = 81/738 (10%)

Query: 32  FANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQ-GVCELKNLSEF 88
           F NL NL++L L+ C +T L      +L  L+ L L  N + G   ++ G C   +L+ F
Sbjct: 164 FGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNC--TSLALF 221

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
                 + G LP  L  L +L+ L++  N  SG +PS +  L S++YL L+ N  +G  +
Sbjct: 222 AAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQG-LI 280

Query: 149 LNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKL 208
              L   + L+ L LSS  N+  V  E F    QL+                        
Sbjct: 281 PKRLTELANLQTLDLSS-NNLTGVIHEEFWRMNQLE-----------------------F 316

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGK 268
           L L+ N L G  P  +  NNT L+ LFL+    +G +    +    L  LD+SNN LTG+
Sbjct: 317 LVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQ 376

Query: 269 LPEDM-----------------GII------LQKLLYIDMSDNRFEGYLPSSIGEMKALI 305
           +P+ +                 G +      L  L    +  N  EG +P  IG +  L 
Sbjct: 377 IPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLE 436

Query: 306 FLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSG 365
            + L +N FSGE+P  +   C  L  +D  GN   G+I      L  L  L+L  N+  G
Sbjct: 437 IMYLYENRFSGEMPVEI-GNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVG 495

Query: 366 KIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGS 425
            I   L N +++  +D+++N LSG IP   G F + L++ ++    L+GN+P  L+N  +
Sbjct: 496 NIPASLGNCHQMTVIDLADNQLSGSIPSSFG-FLTALELFMIYNNSLQGNLPDSLINLKN 554

Query: 426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSG 485
           L  ++ S N  +G ++     SS     +  N   G IP+ L +S+NL  L L  N+F+G
Sbjct: 555 LTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTG 614

Query: 486 VIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLW 545
            IP    +   L  L +  N L G IP +L   ++L  +DL++N +SG IP+       W
Sbjct: 615 RIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPT-------W 667

Query: 546 VAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHY---GNGVYSIFPQ----LVKVEFM 598
           +     L E  L+  S  FVGS+ T   S  +       GN +    PQ    L  +  +
Sbjct: 668 LGKLPLLGE--LKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNAL 725

Query: 599 TKNRYELYNG-----SNIKYMVGLDLSCNQLTGGIPSEIGDLQ--IRGLNLSYNFLSGSI 651
                +L          +  +  L LS N LTG IP EIG LQ     L+LSYN  +G I
Sbjct: 726 NLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRI 785

Query: 652 PGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDES 711
           P + S L  +ESLDLSHN+L G+VP ++ ++  L   N+S+NNL G +  K QF+ +   
Sbjct: 786 PSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQAD 843

Query: 712 SYRGNLHLCGPTINKSCN 729
           ++ GN  LCG  ++  CN
Sbjct: 844 AFVGNAGLCGSPLSH-CN 860

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  252 bits (644), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 243/751 (32%), Positives = 348/751 (46%), Gaps = 117/751 (15%)

Query: 31  GFANLTNLKILDLSGCGIT--TLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNL--- 85
             ANLT L++LDL+    T      + KL  L  L L  N  SGS  S G+ ELKN+   
Sbjct: 91  AIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPS-GIWELKNIFYL 149

Query: 86  ------------------SEFILRGI---NIKGHLPDCLKNLSHLKVLDISYNQLSGTLP 124
                             S  +L G    N+ G +P+CL +L HL++   + N L+G++P
Sbjct: 150 DLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIP 209

Query: 125 SAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLK 184
            +I TL +L  L L  N   G  +     N   L+ L+L          TEN L      
Sbjct: 210 VSIGTLANLTDLDLSGNQLTGK-IPRDFGNLLNLQSLVL----------TENLLE----- 253

Query: 185 VLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGN 244
                      IP+ + +   L  L+L  N L G  P   L N  +L+AL +  N  T +
Sbjct: 254 ---------GDIPAEIGNCSSLVQLELYDNQLTGKIPAE-LGNLVQLQALRIYKNKLTSS 303

Query: 245 LQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKAL 304
           +     +   L HL +S N+L G + E++G  L+ L  + +  N F G  P SI  ++ L
Sbjct: 304 IPSSLFRLTQLTHLGLSENHLVGPISEEIGF-LESLEVLTLHSNNFTGEFPQSITNLRNL 362

Query: 305 IFLRLPKNNFSGELPAPL---------------LTG--------CISLGLLDLSGNNFYG 341
             L +  NN SGELPA L               LTG        C  L LLDLS N   G
Sbjct: 363 TVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTG 422

Query: 342 QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSD 401
           +I P+      L F+ +  N F+G+I + + N + L  L +++N L+G +   IG     
Sbjct: 423 EI-PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQK- 480

Query: 402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLS 460
           L++L +S   L G IP ++ N   LN+L +  N  +G +     NL+ L+ L +  N L 
Sbjct: 481 LRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLE 540

Query: 461 GPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRR 520
           GPIP  +F    L  LDL +N+FSG IP   S+  +L +L L+GN   G IP  L  L  
Sbjct: 541 GPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSL 600

Query: 521 LGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGH 580
           L   D+S N ++G+IP      LL    N+ L   YL F + +  G+I            
Sbjct: 601 LNTFDISDNLLTGTIPG----ELLASLKNMQL---YLNFSNNLLTGTIPK---------- 643

Query: 581 YGNGVYSIFPQLVKVEFMTKNRYE--LYNGS------NIKYMVGLDLSCNQLTGGIPSEI 632
                     +L K+E + +      L++GS        K +  LD S N L+G IP E+
Sbjct: 644 ----------ELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEV 693

Query: 633 --GDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV 690
             G   I  LNLS N  SG IP SF N+  + SLDLS N L+G++P  L  L+ L +  +
Sbjct: 694 FQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKL 753

Query: 691 SFNNLSGLIPDKGQFATFDESSYRGNLHLCG 721
           + NNL G +P+ G F   + S   GN  LCG
Sbjct: 754 ASNNLKGHVPESGVFKNINASDLMGNTDLCG 784

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  226 bits (577), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 232/729 (31%), Positives = 333/729 (45%), Gaps = 135/729 (18%)

Query: 50  TLQGLTKLKNLEALDLSYNNISG---SSESQGVCELKNLSEFILRGINIKGHLPDCLKNL 106
           ++ G     +L +LDLS N++SG   +  S G C            ++  G +   LK L
Sbjct: 114 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-L 172

Query: 107 SHLKVLDISYNQLSGTLPSAITTLTS-----LEYLALLDNNFEGTFLLNSLANHSKLEVL 161
           + L+VLD+S N +SG   + +  + S     L++LA+  N   G   ++   N   LE  
Sbjct: 173 NSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN---LE-- 225

Query: 162 LLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFP 221
                   L V + NF         G+P         FL     L+ LD+SGN L GDF 
Sbjct: 226 -------FLDVSSNNF-------STGIP---------FLGDCSALQHLDISGNKLSGDF- 261

Query: 222 TWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLL 281
           +  +   T+L+ L +++N F G   +P      L +L ++ N  TG++P+ +      L 
Sbjct: 262 SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 319

Query: 282 YIDMSDNRFEGYLPSSIG-------------------------EMKALIFLRLPKNNFSG 316
            +D+S N F G +P   G                         +M+ L  L L  N FSG
Sbjct: 320 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 379

Query: 317 ELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQ-----LEFLYLENNKFSGKIEEGL 371
           ELP  L     SL  LDLS NNF G I P   NL Q     L+ LYL+NN F+GKI   L
Sbjct: 380 ELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPTL 436

Query: 372 SNSNELNELDISNNLLSGHIPHWIGNFSS--DLKVLLMSKMFLKGNIPAQLLNHGSLNLL 429
           SN +EL  L +S N LSG IP  +G+ S   DLK+ L     L+G IP +L+        
Sbjct: 437 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN---MLEGEIPQELMY------- 486

Query: 430 SVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPH 489
                           + +LE L L  N L+G IP  L   +NL  + L +NR +G IP 
Sbjct: 487 ----------------VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 530

Query: 490 QISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGN 549
            I     L  L L  N   G IP +L   R L  LDL+ N  +G+IP+ +      +A N
Sbjct: 531 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 590

Query: 550 VYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGS 609
               + Y      +++ + G           +G G    F Q ++ E +  NR    N  
Sbjct: 591 FIAGKRY------VYIKNDGMKKEC------HGAGNLLEF-QGIRSEQL--NRLSTRNPC 635

Query: 610 NIK----------------YMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIP 652
           NI                  M+ LD+S N L+G IP EIG +  +  LNL +N +SGSIP
Sbjct: 636 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 695

Query: 653 GSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESS 712
               +L+ +  LDLS N+L G++P  ++ L  L+  ++S NNLSG IP+ GQF TF  + 
Sbjct: 696 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 755

Query: 713 YRGNLHLCG 721
           +  N  LCG
Sbjct: 756 FLNNPGLCG 764

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  226 bits (577), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 241/752 (32%), Positives = 354/752 (47%), Gaps = 47/752 (6%)

Query: 54  LTKLKNLEALDLSYNNISGS--SESQGVCELKNLSEFILRGINIKGHLPD--CLKNLSHL 109
           L  L NLE+L L   N+SGS  S ++  C +  L    L    I G + D       S+L
Sbjct: 104 LLPLSNLESLVLKNANLSGSLTSAAKSQCGV-TLDSIDLAENTISGPISDISSFGVCSNL 162

Query: 110 KVLDISYNQLSGTLPSAITTLT-SLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTN 168
           K L++S N L       +   T SL+ L L  NN  G  L   +++   +E+   S + N
Sbjct: 163 KSLNLSKNFLDPPGKEMLKAATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSLKGN 222

Query: 169 MLSVKTENFLPTFQLKVLGLPNYNLK-VIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRN 227
            L+      L    L  L L   N   V PSF     +L+ LDLS N   GD  +  L +
Sbjct: 223 KLAGSIPE-LDFKNLSYLDLSANNFSTVFPSFK-DCSNLQHLDLSSNKFYGDIGS-SLSS 279

Query: 228 NTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSD 287
             KL  L LTNN F G   +PK   + L +L +  N+  G  P  +  + + ++ +D+S 
Sbjct: 280 CGKLSFLNLTNNQFVG--LVPKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSY 337

Query: 288 NRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKY 347
           N F G +P S+GE  +L  + +  NNFSG+LP   L+   ++  + LS N F G +   +
Sbjct: 338 NNFSGMVPESLGECSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSF 397

Query: 348 MNLTQLEFLYLENNKFSGKIEEGLSNS--NELNELDISNNLLSGHIPHWIGNFSSDLKVL 405
            NL +LE L + +N  +G I  G+     N L  L + NNL  G IP  + N  S L  L
Sbjct: 398 SNLLKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSN-CSQLVSL 456

Query: 406 LMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFN-LSSLEHLYLQMNSLSGPIP 464
            +S  +L G+IP+ L +   L  L +  N LSG +      L +LE+L L  N L+GPIP
Sbjct: 457 DLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIP 516

Query: 465 IALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVL 524
            +L   + L  + L +N+ SG IP  +     L  L L  N + G IP +L   + L  L
Sbjct: 517 ASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWL 576

Query: 525 DLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNG 584
           DL+ N ++GSIP      L   +GN+ +         A+  G    Y  +      +G G
Sbjct: 577 DLNTNFLNGSIPP----PLFKQSGNIAV---------ALLTGKRYVYIKNDGSKECHGAG 623

Query: 585 VYSIF-----PQLVKVEFMTK-NRYELYNG------SNIKYMVGLDLSCNQLTGGIPSEI 632
               F      QL ++      N   +Y G      ++   M+ LDLS N+L G IP E+
Sbjct: 624 NLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKEL 683

Query: 633 GDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVS 691
           G +  +  LNL +N LSG IP     LK +  LDLS+NR +G +P  LT L  L   ++S
Sbjct: 684 GAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLS 743

Query: 692 FNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTEEVPATTSIQGEVEDECAID 751
            NNLSG+IP+   F TF +  +  N  LCG  +   C+S  +  A    +          
Sbjct: 744 NNNLSGMIPESAPFDTFPDYRFANN-SLCGYPLPIPCSSGPKSDANQHQKSHRRQASLAG 802

Query: 752 TVSLYWSFGASYVTVILGLFAILWINSNWRRQ 783
           +V++   F    +  I GL  I+ I +  RR+
Sbjct: 803 SVAMGLLFS---LFCIFGLI-IVAIETKKRRR 830

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  226 bits (575), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 241/752 (32%), Positives = 353/752 (46%), Gaps = 47/752 (6%)

Query: 54  LTKLKNLEALDLSYNNISGS--SESQGVCELKNLSEFILRGINIKGHLPD--CLKNLSHL 109
           L  L NLE+L L   N+SGS  S ++  C +  L    L    I G + D       S+L
Sbjct: 104 LLPLSNLESLVLKNANLSGSLTSAAKSQCGV-TLDSIDLAENTISGPISDISSFGVCSNL 162

Query: 110 KVLDISYNQLSGTLPSAITTLT-SLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTN 168
           K L++S N L       +   T SL+ L L  NN  G  L   +++   +E+   S + N
Sbjct: 163 KSLNLSKNFLDPPGKEMLKGATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSIKGN 222

Query: 169 MLSVKTENFLPTFQLKVLGLPNYNLK-VIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRN 227
            L+      L    L  L L   N   V PSF     +L+ LDLS N   GD  +  L +
Sbjct: 223 KLAGSIPE-LDFKNLSYLDLSANNFSTVFPSFK-DCSNLQHLDLSSNKFYGDIGS-SLSS 279

Query: 228 NTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSD 287
             KL  L LTNN F G   +PK   + L +L +  N+  G  P  +  + + ++ +D+S 
Sbjct: 280 CGKLSFLNLTNNQFVG--LVPKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSY 337

Query: 288 NRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKY 347
           N F G +P S+GE  +L  + +  NNFSG+LP   L    ++  + LS N F G +   +
Sbjct: 338 NNFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSF 397

Query: 348 MNLTQLEFLYLENNKFSGKIEEGLSNS--NELNELDISNNLLSGHIPHWIGNFSSDLKVL 405
            NL +LE L + +N  +G I  G+     N L  L + NNL  G IP  + N  S L  L
Sbjct: 398 SNLPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSN-CSQLVSL 456

Query: 406 LMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSS-FNLSSLEHLYLQMNSLSGPIP 464
            +S  +L G+IP+ L +   L  L +  N LSG +      L +LE+L L  N L+GPIP
Sbjct: 457 DLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIP 516

Query: 465 IALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVL 524
            +L   + L  + L +N+ SG IP  +     L  L L  N + G IP +L   + L  L
Sbjct: 517 ASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWL 576

Query: 525 DLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNG 584
           DL+ N ++GSIP      L   +GN+ +         A+  G    Y  +      +G G
Sbjct: 577 DLNTNFLNGSIPP----PLFKQSGNIAV---------ALLTGKRYVYIKNDGSKECHGAG 623

Query: 585 VYSIF-----PQLVKVEFMTK-NRYELYNG------SNIKYMVGLDLSCNQLTGGIPSEI 632
               F      QL ++      N   +Y G      ++   M+ LDLS N+L G IP E+
Sbjct: 624 NLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKEL 683

Query: 633 GDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVS 691
           G +  +  LNL +N LSG IP     LK +  LDLS+NR +G +P  LT L  L   ++S
Sbjct: 684 GAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLS 743

Query: 692 FNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTEEVPATTSIQGEVEDECAID 751
            NNLSG+IP+   F TF +  +  N  LCG  +   C+S  +  A    +          
Sbjct: 744 NNNLSGMIPESAPFDTFPDYRFANN-SLCGYPLPLPCSSGPKSDANQHQKSHRRQASLAG 802

Query: 752 TVSLYWSFGASYVTVILGLFAILWINSNWRRQ 783
           +V++   F    +  I GL  I+ I +  RR+
Sbjct: 803 SVAMGLLFS---LFCIFGLI-IVAIETKKRRR 830

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  223 bits (569), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 211/692 (30%), Positives = 325/692 (46%), Gaps = 67/692 (9%)

Query: 150 NSLANHSKLEVLLLSSRTNMLSVKTEN--------FLPTF--QLKVLGLPNYNL--KVIP 197
           NS++++S ++ +  S  +N++SV   N        F P+    L  + L +YN+    IP
Sbjct: 135 NSISDYSMVDYVF-SKCSNLVSVNISNNKLVGKLGFAPSSLQSLTTVDL-SYNILSDKIP 192

Query: 198 SFLLHQY--DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGN---LQLPKTKH 252
              +  +   LK LDL+ NNL GDF          L    L+ N+ +G+   + LP  K 
Sbjct: 193 ESFISDFPASLKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQNNLSGDKFPITLPNCK- 251

Query: 253 DFLHHLDVSNNNLTGKLPE-DMGIILQKLLYIDMSDNRFEGYLPSSIGEM-KALIFLRLP 310
            FL  L++S NNL GK+P  +     Q L  + ++ NR  G +P  +  + K L+ L L 
Sbjct: 252 -FLETLNISRNNLAGKIPNGEYWGSFQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLS 310

Query: 311 KNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMN-LTQLEFLYLENNKFSGKIEE 369
            N FSGELP+   T C+ L  L+L  N   G      ++ +T + +LY+  N  SG +  
Sbjct: 311 GNTFSGELPSQF-TACVWLQNLNLGNNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPI 369

Query: 370 GLSNSNELNELDISNNLLSGHIPHWIGNFSSD--LKVLLMSKMFLKGNIPAQLLNHGSLN 427
            L+N + L  LD+S+N  +G++P    +  S   L+ +L++  +L G +P +L    SL 
Sbjct: 370 SLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLK 429

Query: 428 LLSVSENCLSGPMTSSF----NLSSL----------------------EHLYLQMNSLSG 461
            + +S N L+GP+        NLS L                      E L L  N L+G
Sbjct: 430 TIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTG 489

Query: 462 PIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRL 521
            IP ++ R +N+I + L  NR +G IP  I     L  L L  N L G +P QL   + L
Sbjct: 490 SIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSL 549

Query: 522 GVLDLSHNRISGSIPSCLTIML-LWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGH 580
             LDL+ N ++G +P  L     L + G+V       QF  A      GT          
Sbjct: 550 IWLDLNSNNLTGDLPGELASQAGLVMPGSVSGK----QF--AFVRNEGGTDCRGAGGLVE 603

Query: 581 YGNGVYSIFPQLVKVEFMTKNR----YELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ 636
           +         +L  V      R      +Y  S    M+  D+S N ++G IP   G++ 
Sbjct: 604 FEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNMG 663

Query: 637 -IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNL 695
            ++ LNL +N ++G+IP SF  LK I  LDLSHN L G +P  L  L+FLS+ +VS NNL
Sbjct: 664 YLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNL 723

Query: 696 SGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTEEVPATTSIQGEVEDECAIDTVSL 755
           +G IP  GQ  TF  S Y  N  LCG  + + C S    P T+ I  + +         +
Sbjct: 724 TGPIPFGGQLTTFPVSRYANNSGLCGVPL-RPCGSAPRRPITSRIHAKKQTVATAVIAGI 782

Query: 756 YWSFGASYVTVILGLFAILWINSNWRRQWFYF 787
            +SF   +V +++ L+ +  +    +++  Y 
Sbjct: 783 AFSF-MCFVMLVMALYRVRKVQKKEQKREKYI 813

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  218 bits (555), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 228/744 (30%), Positives = 337/744 (45%), Gaps = 103/744 (13%)

Query: 79  VCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLAL 138
           +  LKNL E  L G    G +P  + NL HL+ LD+S N L+G LP  ++ L  L YL L
Sbjct: 85  ISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDL 144

Query: 139 LDNNFEGT----FLL------------NSLANHSKLEVLLLSSRTNML--------SVKT 174
            DN+F G+    F +            NSL+     E+  LS+ +N+          + +
Sbjct: 145 SDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPS 204

Query: 175 E--------NF----------LPTFQLKVLGLPNYNLKV------IPSFLLHQYDLKLLD 210
           E        NF          LP    K+  L   +L        IP      ++L +L+
Sbjct: 205 EIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILN 264

Query: 211 LSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLP 270
           L    L+G  P   L N   L++L L+ NS +G L L  ++   L       N L+G LP
Sbjct: 265 LVSAELIGLIPPE-LGNCKSLKSLMLSFNSLSGPLPLELSEIPLLT-FSAERNQLSGSLP 322

Query: 271 EDMGI--ILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCIS 328
             MG   +L  LL   +++NRF G +P  I +   L  L L  N  SG +P  L  G  S
Sbjct: 323 SWMGKWKVLDSLL---LANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPREL-CGSGS 378

Query: 329 LGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS 388
           L  +DLSGN   G I   +   + L  L L NN+ +G I E L     L  LD+ +N  +
Sbjct: 379 LEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKL-PLMALDLDSNNFT 437

Query: 389 GHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLS 447
           G IP  +   S++L     S   L+G +PA++ N  SL  L +S+N L+G +      L+
Sbjct: 438 GEIPKSLWK-STNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLT 496

Query: 448 SLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYL 507
           SL  L L  N   G IP+ L   ++L TLDL  N   G IP +I+    L+ L+L  N L
Sbjct: 497 SLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNL 556

Query: 508 EGQIPNQ------------LCQLRRLGVLDLSHNRISGSIPS----CLTIMLLWVAGNVY 551
            G IP++            L  L+  G+ DLS+NR+SG IP     CL ++ + ++ N  
Sbjct: 557 SGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHL 616

Query: 552 LHE-----------PYLQFFSAIFVGSIGTYYNSTFHF-----------GHYGNGVYSIF 589
             E             L        GSI     ++              GH     + + 
Sbjct: 617 SGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPES-FGLL 675

Query: 590 PQLVKVEFMTKNRYE---LYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYN 645
             LVK+  +TKN+ +     +  N+K +  +DLS N L+G + SE+  ++ + GL +  N
Sbjct: 676 GSLVKLN-LTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQN 734

Query: 646 FLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQF 705
             +G IP    NL  +E LD+S N LSG++P ++  L  L   N++ NNL G +P  G  
Sbjct: 735 KFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVC 794

Query: 706 ATFDESSYRGNLHLCGPTINKSCN 729
               ++   GN  LCG  +   C 
Sbjct: 795 QDPSKALLSGNKELCGRVVGSDCK 818

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  216 bits (549), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 237/742 (31%), Positives = 344/742 (46%), Gaps = 77/742 (10%)

Query: 76  SQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEY 135
           S  +  L+ L +  LR  +  G +P  L   + L  + + YN LSG LP A+  LTSLE 
Sbjct: 85  SDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEV 144

Query: 136 LALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKV 195
             +  N   G      +   S L+ L +SS T             F  +           
Sbjct: 145 FNVAGNRLSGEI---PVGLPSSLQFLDISSNT-------------FSGQ----------- 177

Query: 196 IPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFL 255
           IPS L +   L+LL+LS N L G+ P   L N   L+ L+L  N   G L    +    L
Sbjct: 178 IPSGLANLTQLQLLNLSYNQLTGEIPA-SLGNLQSLQYLWLDFNLLQGTLPSAISNCSSL 236

Query: 256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFS 315
            HL  S N + G +P   G  L KL  + +S+N F G +P S+    +L  ++L  N FS
Sbjct: 237 VHLSASENEIGGVIPAAYGA-LPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFS 295

Query: 316 GELPAPLLTGC-ISLGLLDLSGNNFYGQIFPKYM-NLTQLEFLYLENNKFSGKIEEGLSN 373
             +       C   L +LDL  N   G+ FP ++ N+  L+ L +  N FSG+I   + N
Sbjct: 296 DIVRPETTANCRTGLQVLDLQENRISGR-FPLWLTNILSLKNLDVSGNLFSGEIPPDIGN 354

Query: 374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSE 433
              L EL ++NN L+G IP  I    S L VL      LKG IP  L    +L +LS+  
Sbjct: 355 LKRLEELKLANNSLTGEIPVEIKQCGS-LDVLDFEGNSLKGQIPEFLGYMKALKVLSLGR 413

Query: 434 NCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQIS 492
           N  SG + SS  NL  LE L L  N+L+G  P+ L   ++L  LDL  NRFSG +P  IS
Sbjct: 414 NSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSIS 473

Query: 493 ESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLT----IMLLWVAG 548
               L FL L GN   G+IP  +  L +L  LDLS   +SG +P  L+    + ++ + G
Sbjct: 474 NLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQG 533

Query: 549 NVY---LHEPYLQFFSAIFV----GSIGTYYNSTFHFGHYGNGVY--------SIFPQL- 592
           N +   + E +    S  +V     S       TF F      +         SI P++ 
Sbjct: 534 NNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIG 593

Query: 593 ----VKVEFMTKNR---YELYNGSNIKYMVGLDLSCNQLTGGIPSEI-GDLQIRGLNLSY 644
               ++V  +  NR   +   + S +  +  LDL  N L+G IP EI     +  L+L +
Sbjct: 594 NCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDH 653

Query: 645 NFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNF-LSNFNVSFNNLSGLIPDKG 703
           N LSG IPGSFS L  +  +DLS N L+G++P  L  ++  L  FNVS NNL G IP   
Sbjct: 654 NHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASL 713

Query: 704 QFATFDESSYRGNLHLCGPTINKSCNSTEEVPATTSIQGEVEDECAIDTVSLYWSFGASY 763
                + S + GN  LCG  +N+ C S       ++ +G+ +    I  + +     A+ 
Sbjct: 714 GSRINNTSEFSGNTELCGKPLNRRCES-------STAEGKKKKRKMILMIVM-----AAI 761

Query: 764 VTVILGLFAILWINS--NWRRQ 783
              +L LF   ++ +   WR++
Sbjct: 762 GAFLLSLFCCFYVYTLLKWRKK 783

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  213 bits (541), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 220/717 (30%), Positives = 331/717 (46%), Gaps = 99/717 (13%)

Query: 41  LDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLP 100
           LD + C  T +   T L+ + ++DL+  N+SG+  S  +C+L  L +  +    I G +P
Sbjct: 51  LDSNPCNWTGI-ACTHLRTVTSVDLNGMNLSGTL-SPLICKLHGLRKLNVSTNFISGPIP 108

Query: 101 DCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEV 160
             L     L+VLD+  N+  G +P  +T + +L+ L L +N   G+ +   + N S L+ 
Sbjct: 109 QDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGS-IPRQIGNLSSLQE 167

Query: 161 LLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK-VIPSFLLHQYDLKLLDLSGNNLVGD 219
           L++ S  N+  V   +     QL+++         VIPS +     LK+L L+ N L G 
Sbjct: 168 LVIYS-NNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGS 226

Query: 220 FPT-------------WVLR----------NNTKLEALFLTNNSFTGNLQLPKTKHDFLH 256
            P              W  R          N ++LE L L  N FTG++     K   + 
Sbjct: 227 LPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMK 286

Query: 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG 316
            L +  N LTG++P ++G ++     ID S+N+  G++P   G +  L  L L +N   G
Sbjct: 287 RLYLYTNQLTGEIPREIGNLIDAA-EIDFSENQLTGFIPKEFGHILNLKLLHLFENILLG 345

Query: 317 ELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNE 376
            +P  L                  G+       LT LE L L  N+ +G I + L     
Sbjct: 346 PIPREL------------------GE-------LTLLEKLDLSINRLNGTIPQELQFLPY 380

Query: 377 LNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL 436
           L +L + +N L G IP  IG F S+  VL MS   L G IPA      +L LLS+  N L
Sbjct: 381 LVDLQLFDNQLEGKIPPLIG-FYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKL 439

Query: 437 SGPMTSSFN-LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESL 495
           SG +        SL  L L  N L+G +PI LF   NL  L+L  N  SG I   + +  
Sbjct: 440 SGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLK 499

Query: 496 TLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP----SCLTIMLLWVAGNVY 551
            L  L L  N   G+IP ++  L ++   ++S N+++G IP    SC+TI  L ++GN  
Sbjct: 500 NLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNK- 558

Query: 552 LHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYEL-----Y 606
                   FS      +G                     QLV +E +  +   L     +
Sbjct: 559 --------FSGYIAQELG---------------------QLVYLEILRLSDNRLTGEIPH 589

Query: 607 NGSNIKYMVGLDLSCNQLTGGIPSEIGDL---QIRGLNLSYNFLSGSIPGSFSNLKWIES 663
           +  ++  ++ L L  N L+  IP E+G L   QI  LN+S+N LSG+IP S  NL+ +E 
Sbjct: 590 SFGDLTRLMELQLGGNLLSENIPVELGKLTSLQI-SLNISHNNLSGTIPDSLGNLQMLEI 648

Query: 664 LDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLC 720
           L L+ N+LSG++P  +  L  L   N+S NNL G +PD   F   D S++ GN  LC
Sbjct: 649 LYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	790
358345471	933	Receptor kinase [Medicago truncatula] gi	0.892	0.755	0.487	1e-168
15221162	965	receptor like protein 15 [Arabidopsis th	0.955	0.782	0.456	1e-166
297842171	966	leucine-rich repeat family protein [Arab	0.951	0.778	0.462	1e-165
12324907	910	putative disease resistance protein; 468	0.972	0.843	0.454	1e-165
255553269	2793	receptor-kinase, putative [Ricinus commu	0.834	0.235	0.488	1e-161
238478392	913	receptor like protein 1 [Arabidopsis tha	0.970	0.840	0.445	1e-158
359483099	1231	PREDICTED: probable LRR receptor-like se	0.943	0.605	0.442	1e-158
240254032	1034	receptor like protein 1 [Arabidopsis tha	0.970	0.741	0.445	1e-157
358345693	1011	Receptor-like protein kinase [Medicago t	0.903	0.706	0.444	1e-156
357468861	1016	Receptor-like protein kinase [Medicago t	0.903	0.702	0.444	1e-156

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  600 bits (1546), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 365/748 (48%), Positives = 475/748 (63%), Gaps = 43/748 (5%)

Query: 78  GVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA 137
           G+C +KNL E  L    + G+ P CL+NL+ L+VLD+S N   G +PS I +L SLEYL+
Sbjct: 177 GLCGMKNLQELDLSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIPSFIISLKSLEYLS 236

Query: 138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTE---NFLPTFQLKVLGLPNYNLK 194
           L D NF+G F  +SL NHSKLEV LLS +TN L V+TE   ++ PTFQLKVL L N  L 
Sbjct: 237 LFDTNFDGIFSFSSLNNHSKLEVFLLSPKTNNLYVETEESPSWHPTFQLKVLQLRNCFLN 296

Query: 195 -----VIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPK 249
                  P+FLL+Q++L+LLDLS N L G+FP+W+L NNTKLE L+L NNSFTG L+LP 
Sbjct: 297 SKRDGTFPTFLLYQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMNNSFTGTLELPT 356

Query: 250 TKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRL 309
            KH  L  L +SNN + G+L ED+G I   L Y+++S N FEG LPSSIGEM+ +  L L
Sbjct: 357 FKHGLL-DLQISNNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGEMQTIRTLDL 415

Query: 310 PKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEE 369
             NNFSGEL + L++   SL LL LS N+F+G + P   NLT+L +LYL NN FSG IE+
Sbjct: 416 SNNNFSGELSSHLISNLTSLRLLRLSHNSFHGLV-PLLSNLTRLNWLYLNNNSFSGVIED 474

Query: 370 GLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLL 429
           G+SN++ L  LDISNN+LSG IP WIG F+  L VL +SK  L+G IP +L N  SL+ L
Sbjct: 475 GVSNNSSLFSLDISNNMLSGRIPRWIGRFTK-LSVLSLSKNRLQGEIPNELCNLISLSYL 533

Query: 430 SVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIP 488
            +SEN LS  +   F N   ++ LYLQ N+L G IP A  + + L +LDLRDN F G IP
Sbjct: 534 DLSENNLSDFLPYCFKNFKYMKFLYLQKNALQGNIPYAFSQLTKLTSLDLRDNNFFGNIP 593

Query: 489 HQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLT-------- 540
             I+    LR LLL GN L G IP  +C+L  + ++DLSHN I+ +IP C+         
Sbjct: 594 QWINRLSKLRVLLLAGNKLTGPIPIYVCELEHVRIMDLSHNWINETIPPCIKNISFKMVE 653

Query: 541 IMLLWVAGNVYLHE----PYLQFF-----SAIFV---------GSIGTYYNSTFHFGHYG 582
                V G    ++      +Q++     S IF+          +   +YNS+    H  
Sbjct: 654 FQTTAVGGRAVQNDNDSKDKIQYYGNTATSYIFLVDDIWFTPGNTFDIFYNSSLSLNHPI 713

Query: 583 NGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLN 641
              Y I  ++V++EF TK+ Y  Y G+N+  M GLDLS N L+G IP EIG+L+ I+ LN
Sbjct: 714 ADEYMISYEIVEIEFRTKSYYLSYKGNNLNLMTGLDLSSNNLSGSIPPEIGELRDIKALN 773

Query: 642 LSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD 701
           LS+N  SGSIPG+F NL  IESLDLS+N LSG +P  LT L  L+ FNVS+N  SG +P 
Sbjct: 774 LSHNRFSGSIPGTFPNLINIESLDLSYNNLSGALPQNLTNLYSLAIFNVSYNKFSGRVPT 833

Query: 702 KGQFATFDESSYRGNLHLCGPTINKSCNSTEEVPATTSIQGEVEDECAIDTVSLYWSFGA 761
             QFA FDE++YRGN  LCG  IN +CN T   P  ++ Q +     AID  S YWS  A
Sbjct: 834 TMQFANFDENNYRGNSDLCGSVINITCNHTSIFPPASTTQHQT----AIDMESFYWSCVA 889

Query: 762 SYVTVILGLFAILWINSNWRRQWFYFID 789
           SYVTV++GL  ILW+NS+W R WF ++D
Sbjct: 890 SYVTVVIGLAVILWVNSHWCRVWFRYVD 917

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221162|ref|NP_177559.1| receptor like protein 15 [Arabidopsis thaliana] gi|12323812|gb|AAG51871.1|AC079678_1 disease resistance protein, putative; 1096-4664 [Arabidopsis thaliana] gi|332197443|gb|AEE35564.1| receptor like protein 15 [Arabidopsis thaliana]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 362/793 (45%), Positives = 491/793 (61%), Gaps = 38/793 (4%)

Query: 27  FIVVGFANLTNLKILDLSGC---GITTLQGLTKLKNLEALDLSYNNISGSSESQG----- 78
           F      +LTNL++LDLS     G   +Q L+ L+ L+ALDLS N  SGS E QG     
Sbjct: 172 FPAKELRDLTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTD 231

Query: 79  --------VCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTL 130
                   +CEL N+ E  L    + GHLP CL +L+ L+VLD+S N+L+GT+PS++ +L
Sbjct: 232 LLFSIQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSL 291

Query: 131 TSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTEN-FLPTFQLKVLGLP 189
            SLEYL+L DN+FEG+F   SLAN S L VL L S+++ L V +E+ + P FQL V+ L 
Sbjct: 292 QSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALR 351

Query: 190 NYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPK 249
           + N++ +P FLLHQ DL+ +DLS NN+ G  P+W+L NNTKL+ L L NN FT + Q+PK
Sbjct: 352 SCNMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFT-SFQIPK 410

Query: 250 TKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRL 309
           + H+ L  LDVS N+     PE++G I   L Y++ S N F+  LPSS+G M  + ++ L
Sbjct: 411 SAHNLLF-LDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDL 469

Query: 310 PKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEE 369
            +N+F G LP   + GC S+ +L LS N   G+IFP+  N T +  L+++NN F+GKI +
Sbjct: 470 SRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQ 529

Query: 370 GLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLL 429
           GL +   L  LD+SNN L+G IP WIG   S L  LL+S  FLKG+IP  L N  SL LL
Sbjct: 530 GLRSLINLELLDMSNNNLTGVIPSWIGELPS-LTALLISDNFLKGDIPMSLFNKSSLQLL 588

Query: 430 SVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPH 489
            +S N LSG +    +  +   L LQ N LSG IP  L   +N+  LDLR+NRFSG IP 
Sbjct: 589 DLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLL--ANVEILDLRNNRFSGKIPE 646

Query: 490 QISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCL--TIMLLWVA 547
            I+    +  LLLRGN   GQIP+QLC L  + +LDLS+NR++G+IPSCL  T       
Sbjct: 647 FINIQ-NISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKE 705

Query: 548 GNVYLHEPYLQFFSAIFVG-SIGTYYNSTFHFGHYGNGVYSIFP--------QLVKVEFM 598
              Y ++  + F S +F G S+   ++S  + G Y   + ++ P           K+EF 
Sbjct: 706 CTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTKIEFA 765

Query: 599 TKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGD-LQIRGLNLSYNFLSGSIPGSFSN 657
           TK+RY+ Y G N+K + G+DLS N+L+G IP E G  L++R LNLS+N LSG IP S S+
Sbjct: 766 TKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISS 825

Query: 658 LKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNL 717
           ++ +ES DLS NRL G++P +LTEL  LS F VS NNLSG+IP   QF TFD  SY GN 
Sbjct: 826 MEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNR 885

Query: 718 HLCGPTINKSCNSTEEVPATTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWIN 777
            LCG   N+SCN+     A   ++    DE  ID VS Y SF A+YVT+++G+ A L  +
Sbjct: 886 LLCGQPTNRSCNNNSYEEADNGVEA---DESIIDMVSFYLSFAAAYVTILIGILASLSFD 942

Query: 778 SNWRRQWFYFIDA 790
           S W R WFY +DA
Sbjct: 943 SPWSRFWFYKVDA 955

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 368/796 (46%), Positives = 487/796 (61%), Gaps = 44/796 (5%)

Query: 27  FIVVGFANLTNLKILDLSGC---GITTLQGLTKLKNLEALDLSYNNISGSSESQG----- 78
           F      +LTNL++LDLS     G   +Q L+ L+ L+ALDLS N  SGS E QG     
Sbjct: 175 FPAKELRDLTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFSTN 234

Query: 79  --------VCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTL 130
                   +CELKN  E  L    + GH P CL +L+ L+VLD+S NQL+GT+PS + +L
Sbjct: 235 LQEWCIHGICELKNTQELDLSQNQLVGHFPSCLTSLTGLRVLDLSSNQLTGTVPSTLGSL 294

Query: 131 TSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTEN-FLPTFQLKVLGLP 189
            SLEYL+L DN+FEG+F   SLAN S L VL L S+++ L V +E+ + P FQL V+ L 
Sbjct: 295 PSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALR 354

Query: 190 NYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPK 249
           + N++ +P FL+HQ DL+ +DLS N + G  P+W+L NNTKL+ L L NN FT + Q+PK
Sbjct: 355 SCNMEKVPHFLIHQKDLRHVDLSNNKISGKLPSWLLANNTKLKVLLLQNNFFT-SFQIPK 413

Query: 250 TKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRL 309
           + HD L  LD S N      PE++G I   L Y+++  N F+G LPSS+G MK L +L L
Sbjct: 414 SAHDLLF-LDASANEFNHLFPENIGWIFPHLRYMNIYKNDFQGNLPSSLGNMKGLQYLDL 472

Query: 310 PKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEE 369
             N+F G+LP   + GC S+ +L LS N   G+IFP+  NLT L  L+++NN F+GKI +
Sbjct: 473 SHNSFHGKLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNLTSLLGLFMDNNLFTGKIGQ 532

Query: 370 GLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLL 429
           GL +   L  LD+SNN L+G IP WIG   S L  LL+S  FLKG IP  L N  SL LL
Sbjct: 533 GLRSLINLELLDMSNNNLTGVIPSWIGELPS-LTALLISDNFLKGEIPTSLFNKSSLQLL 591

Query: 430 SVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPH 489
            +S N LSG +    +      L LQ N+LSG I   L    N+  LDLR+NRFSG IP 
Sbjct: 592 DLSTNSLSGGIPPHHDSRDGVVLLLQDNNLSGTIADTLL--VNVEILDLRNNRFSGNIPE 649

Query: 490 QISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGN 549
            I+ +  +  LLLRGN L G+IP+QLC L  + +LDLS+NR++GSIPSCL+         
Sbjct: 650 FIN-TQNISILLLRGNKLTGRIPHQLCGLSNIQLLDLSNNRLNGSIPSCLSNTSFGFGKE 708

Query: 550 V--YLHEPYLQFFSAIFVG-----------SIGTYYNSTFHFGHYGNGVYSIFPQLVKVE 596
              Y ++  + F S +F G           + G Y+ S      +    Y    Q  K+E
Sbjct: 709 CTSYDYDFGISFPSDVFNGFSLHQDLSSNKNSGIYFKSLLMLDPFSMD-YKAATQ-TKIE 766

Query: 597 FMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGD-LQIRGLNLSYNFLSGSIPGSF 655
           F TK+RY+ Y G N+K + G+DLS N+L+G IP E G  L++R LNLS+N LSG IP S 
Sbjct: 767 FATKHRYDAYMGGNLKLLFGIDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSL 826

Query: 656 SNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRG 715
           S+++ +ES DLS NRL G++P +LTEL  LS F VS NNLSG+IP+  QF TFD  SY G
Sbjct: 827 SSMEKMESFDLSFNRLQGRIPAQLTELTSLSVFKVSHNNLSGVIPEGRQFNTFDAESYLG 886

Query: 716 NLHLCGPTINKSCNSTEEVPATTSIQGEVED-ECAIDTVSLYWSFGASYVTVILGLFAIL 774
           N  LCG   N+SCN+     A      EVED E  ID  S YWSFGA+YVT+++G+ A L
Sbjct: 887 NRLLCGQPTNRSCNNNSFEEA----DDEVEDNESTIDMESFYWSFGAAYVTILVGILASL 942

Query: 775 WINSNWRRQWFYFIDA 790
             +S W+R WF  +DA
Sbjct: 943 SFDSPWKRFWFDTVDA 958

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12324907|gb|AAG52409.1|AC020579_11 putative disease resistance protein; 46848-50365 [Arabidopsis thaliana]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 361/795 (45%), Positives = 493/795 (62%), Gaps = 27/795 (3%)

Query: 9   LEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYN 68
           L+  SNK  FNN+   +F  +    +LT L +   +  G    + L  L NLE LDLS N
Sbjct: 120 LDLASNK--FNNS---IFHFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLELLDLSRN 174

Query: 69  NISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAIT 128
             +GS   QG+CEL N+ E  L    + GHLP CL +L+ L+VLD+S N+L+GT+PS++ 
Sbjct: 175 RFNGSIPIQGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLG 234

Query: 129 TLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTE-NFLPTFQLKVLG 187
           +L SLEYL+L DN+FEG+F   SLAN S L VL L S+++ L V +E ++ P FQL V+ 
Sbjct: 235 SLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIA 294

Query: 188 LPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQL 247
           L + N++ +P FLLHQ DL+ +DLS NN+ G  P+W+L NNTKL+ L L NN FT + Q+
Sbjct: 295 LRSCNMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFT-SFQI 353

Query: 248 PKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFL 307
           PK+ H+ L  LDVS N+     PE++G I   L Y++ S N F+  LPSS+G M  + ++
Sbjct: 354 PKSAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYM 412

Query: 308 RLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKI 367
            L +N+F G LP   + GC S+ +L LS N   G+IFP+  N T +  L+++NN F+GKI
Sbjct: 413 DLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKI 472

Query: 368 EEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLN 427
            +GL +   L  LD+SNN L+G IP WIG   S L  LL+S  FLKG+IP  L N  SL 
Sbjct: 473 GQGLRSLINLELLDMSNNNLTGVIPSWIGELPS-LTALLISDNFLKGDIPMSLFNKSSLQ 531

Query: 428 LLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVI 487
           LL +S N LSG +    +  +   L LQ N LSG IP  L   +N+  LDLR+NRFSG I
Sbjct: 532 LLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLL--ANVEILDLRNNRFSGKI 589

Query: 488 PHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVA 547
           P  I+    +  LLLRGN   GQIP+QLC L  + +LDLS+NR++G+IPSCL+       
Sbjct: 590 PEFINIQ-NISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFG 648

Query: 548 GNV--YLHEPYLQFFSAIFVG-SIGTYYNSTFHFGHYGNGVYSIFP--------QLVKVE 596
                Y ++  + F S +F G S+   ++S  + G Y   + ++ P           K+E
Sbjct: 649 KECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTKIE 708

Query: 597 FMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGD-LQIRGLNLSYNFLSGSIPGSF 655
           F TK+RY+ Y G N+K + G+DLS N+L+G IP E G  L++R LNLS+N LSG IP S 
Sbjct: 709 FATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSI 768

Query: 656 SNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRG 715
           S+++ +ES DLS NRL G++P +LTEL  LS F VS NNLSG+IP   QF TFD  SY G
Sbjct: 769 SSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFG 828

Query: 716 NLHLCGPTINKSCNSTEEVPATTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILW 775
           N  LCG   N+SCN+     A   ++    DE  ID VS Y SF A+YVT+++G+ A L 
Sbjct: 829 NRLLCGQPTNRSCNNNSYEEADNGVEA---DESIIDMVSFYLSFAAAYVTILIGILASLS 885

Query: 776 INSNWRRQWFYFIDA 790
            +S W R WFY +DA
Sbjct: 886 FDSPWSRFWFYKVDA 900

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 348/712 (48%), Positives = 454/712 (63%), Gaps = 53/712 (7%)

Query: 78   GVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA 137
            G+C LK+L E  L      G LP CL NL++L+VLD++ N+ SG + S ++ LTSL+YL 
Sbjct: 1206 GLCGLKSLLELGLSVNQFSGPLPQCLSNLTNLQVLDLTSNEFSGNIQSVVSKLTSLKYLF 1265

Query: 138  LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTE--NFLPTFQLKVLGLPNYNL-- 193
            L  N FEG F  +SLANH KLE+  LSS + ML ++TE   + PTFQLKV+ LPN NL  
Sbjct: 1266 LSGNKFEGLFSFSSLANHKKLEIFELSSGSTMLELETEIPVWFPTFQLKVIDLPNCNLNL 1325

Query: 194  --KVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTK 251
              + IPSFLL+Q+DL+ +DLS NNL+G FP+W+L+NN++LE + + NNSFTG  QLP  +
Sbjct: 1326 RTRRIPSFLLYQHDLQFIDLSHNNLIGAFPSWILQNNSRLEVMNMMNNSFTGTFQLPSYR 1385

Query: 252  HDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPK 311
            H+ ++ L +S+N++ G++P+D+G++L  L Y++MS N FEG +PSSI +M+ L  L L  
Sbjct: 1386 HELIN-LKISSNSIAGQIPKDIGLLLSNLRYLNMSWNCFEGNIPSSISQMEGLSILDLSN 1444

Query: 312  NNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGL 371
            N FSGELP  LL+    L  L LS NNF G+IFP+ MNL +L  L + NN FSGKI+   
Sbjct: 1445 NYFSGELPRSLLSNSTYLVALVLSNNNFQGRIFPETMNLEELTVLDMNNNNFSGKIDVDF 1504

Query: 372  SNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSV 431
                 L+ LDIS N ++G IP                          QL N  S+ +L +
Sbjct: 1505 FYCPRLSVLDISKNKVAGVIP-------------------------IQLCNLSSVEILDL 1539

Query: 432  SENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQI 491
            SEN   G M S FN SSL +L+LQ N L+G IP  L RSSNL+ +DLR+N+FSG IP  I
Sbjct: 1540 SENRFFGAMPSCFNASSLRYLFLQKNGLNGLIPHVLSRSSNLVVVDLRNNKFSGNIPSWI 1599

Query: 492  SESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVY 551
            S+   L  LLL GN L G IPNQLCQLR L ++DLSHN + GSIPSC          N+ 
Sbjct: 1600 SQLSELHVLLLGGNALGGHIPNQLCQLRNLKIMDLSHNLLCGSIPSCFH--------NIS 1651

Query: 552  LHEPYLQFFSAIFVG-SIGTYYNSTFHFGHYGNGVYSIFPQL--------VKVEFMTKNR 602
                  + FS+  +G ++ ++Y+S   + +Y   +    P L        V+VEF+ K R
Sbjct: 1652 FGSMVEESFSSSSIGVAMASHYDS---YAYYKATLELDLPGLLSWSSSSEVQVEFIMKYR 1708

Query: 603  YELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWI 661
            Y  Y GS I  M G+DLS N+L G IPSEIGD+Q IR LNLSYN LSGSIP SFSNLK +
Sbjct: 1709 YNSYKGSVINLMAGIDLSRNELRGEIPSEIGDIQEIRSLNLSYNHLSGSIPFSFSNLKNL 1768

Query: 662  ESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCG 721
            ESLDL +N LSG++P +L ELNFL  F+VS+NNLSG I +KGQF TFDESSY+GN  LCG
Sbjct: 1769 ESLDLRNNSLSGEIPTQLVELNFLGTFDVSYNNLSGRILEKGQFGTFDESSYKGNPELCG 1828

Query: 722  PTINKSCNSTEEVPATTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAI 773
              I++SCN+    P + S   + EDE  ID    YWSF ASYV      FA+
Sbjct: 1829 DLIHRSCNTEATTPPSPSPDVDEEDEGPIDMFWFYWSFCASYVIAFEMEFAM 1880

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478392|ref|NP_001154317.1| receptor like protein 1 [Arabidopsis thaliana] gi|332189997|gb|AEE28118.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 354/795 (44%), Positives = 473/795 (59%), Gaps = 28/795 (3%)

Query: 9   LEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL---QGLTKLKNLEALDL 65
           L+ R NK+    ++++L        +L  L+ LDLS  G T L   +GL    +L+ LD 
Sbjct: 117 LKLRGNKFNHTLSTHVL-------KDLKMLQELDLSDNGFTNLDHGRGLEIPTSLQVLDF 169

Query: 66  SYNNISGSSESQ-GVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLP 124
             N +S + E   G+C L  L E  L   N    LP CL NL+HL+ LD+S NQL+G L 
Sbjct: 170 KRNQLSLTHEGYLGICRLMKLRELDLSS-NALTSLPYCLGNLTHLRTLDLSNNQLNGNLS 228

Query: 125 SAITTLTS-LEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTEN-FLPTFQ 182
           S ++ L S LEYL+LLDNNF+G+FL NSL N ++L V  LSS+  ++ V+TE+ + P FQ
Sbjct: 229 SFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQ 288

Query: 183 LKVLGLPNYNL-KVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSF 241
           LK+L L N +L   +  FL+HQ DL  +DLS N L G FPTW+++NNT+L+ + L+ NS 
Sbjct: 289 LKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSL 348

Query: 242 TGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEM 301
           T  LQLP   H  L  LD+S+N +   + ED+G++   L +++ S N F+G +PSSIGEM
Sbjct: 349 T-KLQLPILVHG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEM 406

Query: 302 KALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENN 361
           K+L  L +  N   G+LP   L+GC SL +L LS N   G+IF K+ NLT L  L+L+ N
Sbjct: 407 KSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGN 466

Query: 362 KFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL 421
            F+G +EEGL  S  L  LDIS+N  SG +P WIG  S  L  L MS   LKG  P  L 
Sbjct: 467 NFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISR-LSYLYMSGNQLKGPFPF-LR 524

Query: 422 NHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN 481
               + ++ +S N  SG +  + N  SL  L LQ N  +G +P  LF+++ L  LDLR+N
Sbjct: 525 QSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNN 584

Query: 482 RFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTI 541
            FSG I + I ++  LR LLLR N  +  IP ++CQL  +G+LDLSHN+  G IPSC + 
Sbjct: 585 NFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSK 644

Query: 542 MLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKN 601
           M      N         F  +         Y S  +        Y   P  V V+F+TK+
Sbjct: 645 MSFGAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATV-VDFLTKS 703

Query: 602 RYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKW 660
           RYE Y G  ++YM GLDLS N+L+G IP EIGDLQ IR LNLS N L+GSIP S S LK 
Sbjct: 704 RYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKG 763

Query: 661 IESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLC 720
           +ESLDLS+N+L G +PP L +LN L   N+S+NNLSG IP KG   TFDE SY GN HLC
Sbjct: 764 LESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLC 823

Query: 721 GPTINKSCNSTEEVPATTSIQGEVEDEC------AIDTVSLYWSFGASYVTVILGLFAIL 774
           G   NK+C S + VP   S+    ++E        ID V  YW+  A Y++  L LFA L
Sbjct: 824 GLPTNKNCIS-QRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFL 882

Query: 775 WINSNWRRQWFYFID 789
           +I+S W R+WFY +D
Sbjct: 883 YIDSRWSREWFYRVD 897

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 357/806 (44%), Positives = 477/806 (59%), Gaps = 61/806 (7%)

Query: 28   IVVGFANLTNLKILDLSGCGIT---TLQGLTKLKNLEALDLSYNNISG------------ 72
            ++     +T+LK L L   G+     +Q    L NLE LDLSYN+ SG            
Sbjct: 235  VIKSLGAITSLKTLVLCRIGLNGSFPIQDFASLSNLEILDLSYNSFSGILPSSIRLMSSL 294

Query: 73   ------------SSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLS 120
                        S  +QG C+L  L E  L     +G LP CL NL+ L++LD+S+N  S
Sbjct: 295  KSLSLAGNQLNGSLPNQGFCQLNKLQELDLNSNFFQGILPPCLNNLTSLRLLDLSHNLFS 354

Query: 121  GTLPSAITTLTSL-EYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTE---N 176
            G + S++    +  EY+ L  N FEG F  NS ANHS L+V++  S  N   ++TE    
Sbjct: 355  GNVSSSLLPSLTSLEYIDLSYNLFEGPFSFNSFANHSNLQVVIHGSDNNKFEIETEYPVG 414

Query: 177  FLPTFQLKVLGLPNYNL-KVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALF 235
            ++P FQLKVL L NY L    P FL +Q+ L ++DLS NNL G FP W+L NNT+LE L 
Sbjct: 415  WVPLFQLKVLVLSNYKLIGDFPGFLRYQFRLTVVDLSHNNLTGSFPNWLLENNTRLEYLV 474

Query: 236  LTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLP 295
            L NNS  G L LP   +  +  LD+S+N L G+L +++  ++  + ++++S+N FEG LP
Sbjct: 475  LRNNSLMGQL-LPLRPNSRITSLDISDNRLVGELQQNVANMIPNIEHLNLSNNGFEGILP 533

Query: 296  SSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEF 355
            SSI EM +L  L L  N+FSGE+P  LL     L  L LS N F+G+IF +  NLT LEF
Sbjct: 534  SSIAEMSSLWSLDLSANSFSGEVPKQLLVA-KDLEFLKLSNNKFHGEIFSRDFNLTSLEF 592

Query: 356  LYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGN 415
            L+L+NN+F G +   +S S+ L  LD+SNN +SG IP WIGN + DL  L++     KG 
Sbjct: 593  LHLDNNQFKGTLSNVISRSSWLRVLDVSNNNMSGEIPSWIGNMT-DLTTLVLGNNSFKGK 651

Query: 416  IPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLIT 475
            +P ++     L  L VS+N LSG + S  ++  L+HL+LQ N  +G IP     SSNL+T
Sbjct: 652  LPPEISQLQRLEFLDVSQNTLSGSLPSLKSIEYLKHLHLQGNMFTGLIPRDFLNSSNLLT 711

Query: 476  LDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSI 535
            LD+RDNR  G IP+ IS  L LR  LLRGN L G IPNQLC L ++ ++DLS+N  SGSI
Sbjct: 712  LDIRDNRLFGSIPNSISRLLELRIFLLRGNLLSGFIPNQLCHLTKISLMDLSNNNFSGSI 771

Query: 536  PSC---LTIMLLWVAGNVY--LHEPYLQFFSAIFVGSIGTY--YNSTFHFGHYGNGVYSI 588
            P C   +         NVY  +  PY  FFS I+ G +  Y  +++  H           
Sbjct: 772  PKCFGHIQFGDFKTEHNVYKPMFNPY-SFFS-IYTGYLVKYLFFSTEAHRD--------- 820

Query: 589  FPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFL 647
              ++ +VEF+TKNR   Y G  + +M GLDLSCN LTG IP E+G L  I  LNLS+N L
Sbjct: 821  --EVDEVEFVTKNRSNSYGGGILDFMSGLDLSCNNLTGEIPRELGMLSSILALNLSHNQL 878

Query: 648  SGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD-KGQFA 706
             GS+P SFS L  IESLDLS+N+LSG++PP    LNFL  FNV+ NN+SG +PD K QF 
Sbjct: 879  KGSVPKSFSKLSQIESLDLSYNKLSGEIPPEFIGLNFLEVFNVAHNNISGRVPDMKEQFG 938

Query: 707  TFDESSYRGNLHLCGPTINKSCNSTEEVPATTSIQGEVEDECA---IDTVSLYWSFGASY 763
            TF ESSY  N  LCGP + + CN++ E P + S Q   E E     ID V  + SF ASY
Sbjct: 939  TFGESSYEDNPFLCGPMLKRKCNTSIESPNSPS-QPSQESEAKWYDIDHVVFFASFVASY 997

Query: 764  VTVILGLFAILWINSNWRRQWFYFID 789
            + ++LG  AIL+IN  WR++WF FI+
Sbjct: 998  IMILLGFAAILYINPYWRQRWFNFIE 1023

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254032|ref|NP_172219.5| receptor like protein 1 [Arabidopsis thaliana] gi|332189996|gb|AEE28117.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 354/795 (44%), Positives = 473/795 (59%), Gaps = 28/795 (3%)

Query: 9    LEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL---QGLTKLKNLEALDL 65
            L+ R NK+    ++++L        +L  L+ LDLS  G T L   +GL    +L+ LD 
Sbjct: 238  LKLRGNKFNHTLSTHVL-------KDLKMLQELDLSDNGFTNLDHGRGLEIPTSLQVLDF 290

Query: 66   SYNNISGSSESQ-GVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLP 124
              N +S + E   G+C L  L E  L   N    LP CL NL+HL+ LD+S NQL+G L 
Sbjct: 291  KRNQLSLTHEGYLGICRLMKLRELDLSS-NALTSLPYCLGNLTHLRTLDLSNNQLNGNLS 349

Query: 125  SAITTLTS-LEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTEN-FLPTFQ 182
            S ++ L S LEYL+LLDNNF+G+FL NSL N ++L V  LSS+  ++ V+TE+ + P FQ
Sbjct: 350  SFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQ 409

Query: 183  LKVLGLPNYNL-KVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSF 241
            LK+L L N +L   +  FL+HQ DL  +DLS N L G FPTW+++NNT+L+ + L+ NS 
Sbjct: 410  LKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSL 469

Query: 242  TGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEM 301
            T  LQLP   H  L  LD+S+N +   + ED+G++   L +++ S N F+G +PSSIGEM
Sbjct: 470  T-KLQLPILVHG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEM 527

Query: 302  KALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENN 361
            K+L  L +  N   G+LP   L+GC SL +L LS N   G+IF K+ NLT L  L+L+ N
Sbjct: 528  KSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGN 587

Query: 362  KFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL 421
             F+G +EEGL  S  L  LDIS+N  SG +P WIG  S  L  L MS   LKG  P  L 
Sbjct: 588  NFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISR-LSYLYMSGNQLKGPFPF-LR 645

Query: 422  NHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN 481
                + ++ +S N  SG +  + N  SL  L LQ N  +G +P  LF+++ L  LDLR+N
Sbjct: 646  QSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNN 705

Query: 482  RFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTI 541
             FSG I + I ++  LR LLLR N  +  IP ++CQL  +G+LDLSHN+  G IPSC + 
Sbjct: 706  NFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSK 765

Query: 542  MLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKN 601
            M      N         F  +         Y S  +        Y   P  V V+F+TK+
Sbjct: 766  MSFGAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATV-VDFLTKS 824

Query: 602  RYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKW 660
            RYE Y G  ++YM GLDLS N+L+G IP EIGDLQ IR LNLS N L+GSIP S S LK 
Sbjct: 825  RYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKG 884

Query: 661  IESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLC 720
            +ESLDLS+N+L G +PP L +LN L   N+S+NNLSG IP KG   TFDE SY GN HLC
Sbjct: 885  LESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLC 944

Query: 721  GPTINKSCNSTEEVPATTSIQGEVEDEC------AIDTVSLYWSFGASYVTVILGLFAIL 774
            G   NK+C S + VP   S+    ++E        ID V  YW+  A Y++  L LFA L
Sbjct: 945  GLPTNKNCIS-QRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFL 1003

Query: 775  WINSNWRRQWFYFID 789
            +I+S W R+WFY +D
Sbjct: 1004 YIDSRWSREWFYRVD 1018

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 349/786 (44%), Positives = 476/786 (60%), Gaps = 72/786 (9%)

Query: 29  VVGFANLTNLKILDLSG---CGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNL 85
            + FA  + L++LDL G    G   ++ +  LKNL+ L L+ N ++G      +C  K+L
Sbjct: 222 TLDFAKFSRLELLDLGGNQFTGSLHVEDVQHLKNLKMLSLNDNQMNG------LCNFKDL 275

Query: 86  SEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEG 145
            E  +        LPDCL NL++L+VL++S N  SG  PS I+ LTSL YL+   N  +G
Sbjct: 276 VELDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAYLSFYGNYMQG 335

Query: 146 TFLLNSLANHSKLEVLLLSSRTNM-LSVKTEN--FLPTFQLKVLGLPNYNL-----KVIP 197
           +F L++LANHS LEVL +SS+ N+ + ++TE   + P FQLK L + N NL      VIP
Sbjct: 336 SFSLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCNLNKDEGSVIP 395

Query: 198 SFLLHQYDLKLLDLSGNNLVGDFPT-WVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLH 256
           +FL +QY+L  L LS NN+ G  P+ W++ N                         D + 
Sbjct: 396 TFLSYQYNLVYLVLSSNNINGSLPSNWLIHN-------------------------DDMI 430

Query: 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG 316
           +LD+SNNNL+G LP+D+GI L  + Y++ S N FEG +PSSIG+MK L  L   +N+FSG
Sbjct: 431 YLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSG 490

Query: 317 ELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNE 376
           ELP  L TGC +L  L LS N  +G I P++ N   +  L+L NN FSG +E+ L N+  
Sbjct: 491 ELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTR 549

Query: 377 LNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL 436
           L  L ISNN  SG IP  IG FS ++  LLMSK  L+G IP ++ +   L +L +S+N L
Sbjct: 550 LETLSISNNSFSGTIPSSIGMFS-NMWALLMSKNQLEGEIPIEISSIWRLQILDLSQNKL 608

Query: 437 SGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLT 496
           +G +     L+ L  LYLQ N LSG IP  L+    L  LDLR+N+FSG IP+ + +   
Sbjct: 609 NGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSE 668

Query: 497 LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPY 556
           LR LLL GN  EG+IP QLC+L+++ ++DLS N ++ SIPSC   ML  +          
Sbjct: 669 LRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMR--------- 719

Query: 557 LQFFSAIF-VGSI--GTYYNSTFHFGHYGNGVYSIFP----QLVK------VEFMTKNRY 603
            Q+  A+F + SI  G +   T +F  + + +    P    QL++      VEF TK+  
Sbjct: 720 -QYVDAVFDLSSILYGQHIQDTHYF--FDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYE 776

Query: 604 ELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIE 662
             Y G  ++ M GLDLSCN+LTG IPS+IGDLQ IR LNLS+N LSG IP +FSNL  IE
Sbjct: 777 YFYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIE 836

Query: 663 SLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGP 722
           SLDLS+N LSG++P  LT+LNFLS FNVS+NNLSG  P  GQFA FDE +YRGN  LCGP
Sbjct: 837 SLDLSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGP 896

Query: 723 TINKSCNSTEEVPATTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRR 782
            +++ C   E  P++ S   E E+E  +D ++ YWSF ASY+T++L    +L IN  WR 
Sbjct: 897 LLSRKCERVEPPPSSQSNDNE-EEETGVDMITFYWSFTASYITILLAFITVLCINPRWRM 955

Query: 783 QWFYFI 788
            WFY+I
Sbjct: 956 AWFYYI 961

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 349/786 (44%), Positives = 476/786 (60%), Gaps = 72/786 (9%)

Query: 29  VVGFANLTNLKILDLSG---CGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNL 85
            + FA  + L++LDL G    G   ++ +  LKNL+ L L+ N ++G      +C  K+L
Sbjct: 222 TLDFAKFSRLELLDLGGNQFTGSLHVEDVQHLKNLKMLSLNDNQMNG------LCNFKDL 275

Query: 86  SEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEG 145
            E  +        LPDCL NL++L+VL++S N  SG  PS I+ LTSL YL+   N  +G
Sbjct: 276 VELDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAYLSFYGNYMQG 335

Query: 146 TFLLNSLANHSKLEVLLLSSRTNM-LSVKTEN--FLPTFQLKVLGLPNYNL-----KVIP 197
           +F L++LANHS LEVL +SS+ N+ + ++TE   + P FQLK L + N NL      VIP
Sbjct: 336 SFSLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCNLNKDEGSVIP 395

Query: 198 SFLLHQYDLKLLDLSGNNLVGDFPT-WVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLH 256
           +FL +QY+L  L LS NN+ G  P+ W++ N                         D + 
Sbjct: 396 TFLSYQYNLVYLVLSSNNINGSLPSNWLIHN-------------------------DDMI 430

Query: 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG 316
           +LD+SNNNL+G LP+D+GI L  + Y++ S N FEG +PSSIG+MK L  L   +N+FSG
Sbjct: 431 YLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSG 490

Query: 317 ELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNE 376
           ELP  L TGC +L  L LS N  +G I P++ N   +  L+L NN FSG +E+ L N+  
Sbjct: 491 ELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTR 549

Query: 377 LNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL 436
           L  L ISNN  SG IP  IG FS ++  LLMSK  L+G IP ++ +   L +L +S+N L
Sbjct: 550 LETLSISNNSFSGTIPSSIGMFS-NMWALLMSKNQLEGEIPIEISSIWRLQILDLSQNKL 608

Query: 437 SGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLT 496
           +G +     L+ L  LYLQ N LSG IP  L+    L  LDLR+N+FSG IP+ + +   
Sbjct: 609 NGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSE 668

Query: 497 LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPY 556
           LR LLL GN  EG+IP QLC+L+++ ++DLS N ++ SIPSC   ML  +          
Sbjct: 669 LRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMR--------- 719

Query: 557 LQFFSAIF-VGSI--GTYYNSTFHFGHYGNGVYSIFP----QLVK------VEFMTKNRY 603
            Q+  A+F + SI  G +   T +F  + + +    P    QL++      VEF TK+  
Sbjct: 720 -QYVDAVFDLSSILYGQHIQDTHYF--FDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYE 776

Query: 604 ELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIE 662
             Y G  ++ M GLDLSCN+LTG IPS+IGDLQ IR LNLS+N LSG IP +FSNL  IE
Sbjct: 777 YFYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIE 836

Query: 663 SLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGP 722
           SLDLS+N LSG++P  LT+LNFLS FNVS+NNLSG  P  GQFA FDE +YRGN  LCGP
Sbjct: 837 SLDLSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGP 896

Query: 723 TINKSCNSTEEVPATTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRR 782
            +++ C   E  P++ S   E E+E  +D ++ YWSF ASY+T++L    +L IN  WR 
Sbjct: 897 LLSRKCERVEPPPSSQSNDNE-EEETGVDMITFYWSFTASYITILLAFITVLCINPRWRM 955

Query: 783 QWFYFI 788
            WFY+I
Sbjct: 956 AWFYYI 961

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	790
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.946	0.775	0.423	4.5e-146
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.944	0.764	0.434	7.3e-146
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.936	0.74	0.420	3.1e-138
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.943	0.687	0.417	4e-138
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.972	0.861	0.417	9.8e-135
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.948	0.801	0.371	4.9e-117
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.948	0.824	0.321	1.4e-85
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.898	0.568	0.299	2e-64
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.888	0.560	0.307	6.1e-62
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.888	0.865	0.289	1.9e-58

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1427 (507.4 bits), Expect = 4.5e-146, P = 4.5e-146
 Identities = 333/786 (42%), Positives = 458/786 (58%)

Query:    34 NLTNLKILDLSGC---GITTLQGLTKLKNLEALDLSYNNISGSSESQG------------ 78
             +LTNL++LDLS     G   +Q L+ L+ L+ALDLS N  SGS E QG            
Sbjct:   179 DLTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQS 238

Query:    79 -VCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA 137
              +CEL N+ E  L    + GHLP CL +L+ L+VLD+S N+L+GT+PS++ +L SLEYL+
Sbjct:   239 GICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLS 298

Query:   138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTEN-FLPTFQLKVLGLPNYNLKVI 196
             L DN+FEG+F   SLAN S L VL L S+++ L V +E+ + P FQL V+ L + N++ +
Sbjct:   299 LFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKV 358

Query:   197 PSFXXXXXXXXXXXXSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLH 256
             P F            S NN+ G  P+W+L NNTKL+ L L NN FT + Q+PK+ H+ L 
Sbjct:   359 PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFT-SFQIPKSAHNLLF 417

Query:   257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG 316
              LDVS N+     PE++G I   L Y++ S N F+  LPSS+G M  + ++ L +N+F G
Sbjct:   418 -LDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHG 476

Query:   317 ELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIXXXXXXXXX 376
              LP   + GC S+ +L LS N   G+IFP+  N T +  L+++NN F+GKI         
Sbjct:   477 NLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLIN 536

Query:   377 XXXXXXXXXXXXGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL 436
                         G IP WIG   S L  LL+S  FLKG+IP  L N  SL LL +S N L
Sbjct:   537 LELLDMSNNNLTGVIPSWIGELPS-LTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSL 595

Query:   437 SGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLT 496
             SG +    +  +   L LQ N LSG IP  L   +N+  LDLR+NRFSG IP  I+    
Sbjct:   596 SGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLL--ANVEILDLRNNRFSGKIPEFINIQ-N 652

Query:   497 LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNV--YLHE 554
             +  LLLRGN   GQIP+QLC L  + +LDLS+NR++G+IPSCL+            Y ++
Sbjct:   653 ISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYD 712

Query:   555 PYLQFFSAIFVG-SIGTYYNSTFHFGHYGNGVYSIFPQLV--------KVEFMTKNRYEL 605
               + F S +F G S+   ++S  + G Y   + ++ P  +        K+EF TK+RY+ 
Sbjct:   713 FGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTKIEFATKHRYDA 772

Query:   606 YNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESL 664
             Y G N+K + G+DLS N+L+G IP E G L ++R LNLS+N LSG IP S S+++ +ES 
Sbjct:   773 YMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESF 832

Query:   665 DLSHNRLSGQVPPRLTEXXXXXXXXXXXXXXXGLIPDKGQFATFDESSYRGNLHLCGPTI 724
             DLS NRL G++P +LTE               G+IP   QF TFD  SY GN  LCG   
Sbjct:   833 DLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCGQPT 892

Query:   725 NKSCNSTEEVPATTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQW 784
             N+SCN+     A   ++    DE  ID VS Y SF A+YVT+++G+ A L  +S W R W
Sbjct:   893 NRSCNNNSYEEADNGVEA---DESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFW 949

Query:   785 FYFIDA 790
             FY +DA
Sbjct:   950 FYKVDA 955

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1425 (506.7 bits), Expect = 7.3e-146, P = 7.3e-146
 Identities = 336/774 (43%), Positives = 451/774 (58%)

Query:    32 FANLTNLKILDLSGCGITTLQGLTKLK---NLEALDLSYNNISGSSESQGVCELKNLSEF 88
             F +L  LK LDLS    ++L  L +LK   NLE L L++N++ G    +  CE+KNL + 
Sbjct:   206 FTHLEKLKALDLSANDFSSLVELQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQL 265

Query:    89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
              LRG   +G LP CL NL+ L+VLD+S NQLSG LP++  +L SLEYL+L DNNFEG F 
Sbjct:   266 DLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFFS 325

Query:   149 LNSLANHSKLEVLLLSSRTNMLSVKTE-NFLPTFQLKVLGLPNYNLKVIPSFXXXXXXXX 207
             LN LAN +KL+V  LSS + ML V+TE N+LP FQL V  LP  +L  IP+F        
Sbjct:   326 LNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALPFCSLGKIPNFLVYQTNLR 385

Query:   208 XXXXSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTG 267
                 S N L GD PTW+L NN +L+ L L NNSFT   Q+P   H  L  LD S N++TG
Sbjct:   386 LVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDITG 443

Query:   268 KLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCI 327
              LP+++G +L +LL+++ S N F+G LPSS+GEM  + FL L  NNFSGELP  LLTGC 
Sbjct:   444 VLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCF 503

Query:   328 SLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIXXXXXXXXXXXXXXXXXXXX 387
             SL  L LS N+F G I P    LT L  L + NN F+G+I                    
Sbjct:   504 SLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRL 563

Query:   388 XGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLS 447
              G I   I   SS L +LL+S   L+G +P  LL    LN L +S N LSG + SS  ++
Sbjct:   564 TGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSV-VN 622

Query:   448 SLE--HLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN 505
             S+    ++L  NS +GP+P+ L    N   LDLR+N+ SG IP  ++    +  LLLRGN
Sbjct:   623 SMYGIKIFLHNNSFTGPLPVTLLE--NAYILDLRNNKLSGSIPQFVNTGKMIT-LLLRGN 679

Query:   506 YLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFV 565
              L G IP +LC L  + +LDLS N+++G IP CL  +   +   + L   + Q  S  F 
Sbjct:   680 NLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGL-SGFSQEIS--FG 736

Query:   566 GSIGT-YYNSTF---HFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSC 621
              S+   +Y STF    F  Y +  Y I    V++EF  K RY+ ++G  + YM GLDLS 
Sbjct:   737 DSLQMEFYRSTFLVDEFMLYYDSTYMI----VEIEFAAKQRYDSFSGGTLDYMYGLDLSS 792

Query:   622 NQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLT 680
             N+L+G IP+E+GDL ++R LNLS N LS SIP +FS LK IESLDLS+N L G +P +LT
Sbjct:   793 NELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLT 852

Query:   681 EXXXXXXXXXXXXXXXGLIPDKGQFATFDESSYRGNLHLCGPTINKSC----NSTEEVPA 736
                             G+IP  GQF TF+++SY GN  LCG   ++SC    N+ E    
Sbjct:   853 NLTSLAVFNVSFNNLSGIIPQGGQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNG 912

Query:   737 TTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQWFYFIDA 790
                 + + +DE AID V LYW+ G++Y   ++G+  ++  +  WRR W   +DA
Sbjct:   913 GEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVDA 966

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1353 (481.3 bits), Expect = 3.1e-138, P = 3.1e-138
 Identities = 327/777 (42%), Positives = 441/777 (56%)

Query:    34 NLTNLKILDLSGC---GITTLQGLTKLKNLEALDLSYNNISGSSESQG----------VC 80
             +LTN+++LDLS     G   ++ L  L+ L+ALDLS N  S S E QG           C
Sbjct:   196 DLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTC 255

Query:    81 ELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLD 140
               KN+ E  L    + G  P CL +L+ L+VLD+S NQL+G +PSA+  L SLEYL+L  
Sbjct:   256 PWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFG 315

Query:   141 NNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTE-NFLPTFQLKVLGLPNYNLKVIPSF 199
             NNFEG F L  LAN SKL+VL L S++N L V+ E ++ P FQL V+ L + NL+ +P F
Sbjct:   316 NNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHF 375

Query:   200 XXXXXXXXXXXXSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLD 259
                         S N + G+FP+W+L NNTKLE L L NNSFT + QLPK+ H+ L  L+
Sbjct:   376 LLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFT-SFQLPKSAHNLLF-LN 433

Query:   260 VSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELP 319
             VS N       ++ G IL  L+ ++++ N F+G LPSS+  MK++ FL L  N F G+LP
Sbjct:   434 VSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLP 493

Query:   320 APLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIXXXXXXXXXXXX 379
                L GC +L +L LS N   G++FP+  N T+L  + ++NN F+G I            
Sbjct:   494 RRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNV 553

Query:   380 XXXXXXXXXGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGP 439
                      G IP WIG     L  L +S   L+G IP  L N   L LL +S N LSG 
Sbjct:   554 LDISNNKLTGVIPSWIGE-RQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGD 612

Query:   440 MTSSFNLSSLEH---LYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLT 496
             +    ++SS+ H   L LQ N+LSG IP  L    N+I LDLR+NR SG +P  I+    
Sbjct:   613 IPP--HVSSIYHGAVLLLQNNNLSGVIPDTLLL--NVIVLDLRNNRLSGNLPEFINTQ-N 667

Query:   497 LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCL--TIMLLWVAGNVYLHE 554
             +  LLLRGN   GQIP+Q C L  + +LDLS+N+ +GSIPSCL  T   L    + Y ++
Sbjct:   668 ISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYD 727

Query:   555 PYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYM 614
                +F +A        Y+ S      + N V     Q  K+EF TK+RY+ Y G N+K +
Sbjct:   728 VPSRFGTA----KDPVYFESLLMIDEF-NMVNETNSQ-TKIEFATKHRYDAYMGGNLKLL 781

Query:   615 VGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSG 673
              G+DLS N+L+G IP E+G L ++  LNLS+N LSG I  SFS LK +ESLDLS NRL G
Sbjct:   782 FGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQG 841

Query:   674 QVPPRLTEXXXXXXXXXXXXXXXGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTEE 733
              +P +LT+               G++P   QF TF+  SY GN  LCG +I+ SC S   
Sbjct:   842 PIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQSYFGNPLLCGKSIDISCASNNF 901

Query:   734 VPATTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQWFYFIDA 790
              P    ++    DE  +D  S YWSF A+YVT++LG+ A L  +S W R WFY +DA
Sbjct:   902 HPTDNGVEA---DESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVDA 955

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1352 (481.0 bits), Expect = 4.0e-138, P = 4.0e-138
 Identities = 321/768 (41%), Positives = 432/768 (56%)

Query:    34 NLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQ-GVCELKNLSEFILRG 92
             ++T+ K + + G G   L+  T   +L+ LD   N +S + E   G+C L  L E  L  
Sbjct:   311 SITHHKSVTVGGNGFLGLEIPT---SLQVLDFKRNQLSLTHEGYLGICRLMKLRELDLSS 367

Query:    93 INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTS-LEYLALLDNNFEGTFLLNS 151
              N    LP CL NL+HL+ LD+S NQL+G L S ++ L S LEYL+LLDNNF+G+FL NS
Sbjct:   368 -NALTSLPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYLSLLDNNFDGSFLFNS 426

Query:   152 LANHSKLEVLLLSSRTNMLSVKTEN-FLPTFQLKVLGLPNYNL-KVIPSFXXXXXXXXXX 209
             L N ++L V  LSS+  ++ V+TE+ + P FQLK+L L N +L   +  F          
Sbjct:   427 LVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFV 486

Query:   210 XXSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKL 269
               S N L G FPTW+++NNT+L+ + L+ NS T  LQLP   H  L  LD+S+N +   +
Sbjct:   487 DLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVHG-LQVLDISSNMIYDSI 544

Query:   270 PEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISL 329
              ED+G++   L +++ S N F+G +PSSIGEMK+L  L +  N   G+LP   L+GC SL
Sbjct:   545 QEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSL 604

Query:   330 GLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIXXXXXXXXXXXXXXXXXXXXXG 389
              +L LS N   G+IF K+ NLT L  L+L+ N F+G +                     G
Sbjct:   605 RVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSG 664

Query:   390 HIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSL 449
              +P WIG  S  L  L MS   LKG  P  L     + ++ +S N  SG +  + N  SL
Sbjct:   665 MLPLWIGRISR-LSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSL 722

Query:   450 EHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEG 509
               L LQ N  +G +P  LF+++ L  LDLR+N FSG I + I ++  LR LLLR N  + 
Sbjct:   723 RELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQT 782

Query:   510 QIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQF-FSAI-FVGS 567
              IP ++CQL  +G+LDLSHN+  G IPSC + M      N         F FS I F+  
Sbjct:   783 YIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSYITFLPH 842

Query:   568 IGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGG 627
                 Y S  +        Y   P  V V+F+TK+RYE Y G  ++YM GLDLS N+L+G 
Sbjct:   843 C--QYGSHLNLDDGVRNGYQPKPATV-VDFLTKSRYEAYQGDILRYMHGLDLSSNELSGE 899

Query:   628 IPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEXXXXX 686
             IP EIGDLQ IR LNLS N L+GSIP S S LK +ESLDLS+N+L G +PP L +     
Sbjct:   900 IPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLG 959

Query:   687 XXXXXXXXXXGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTE--EVPATTSIQGEV 744
                       G IP KG   TFDE SY GN HLCG   NK+C S    E P+ ++   E 
Sbjct:   960 YLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCISQRVPEPPSVSTHAKEE 1019

Query:   745 EDE---CAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQWFYFID 789
             E+E     ID V  YW+  A Y++  L LFA L+I+S W R+WFY +D
Sbjct:  1020 ENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREWFYRVD 1067

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1320 (469.7 bits), Expect = 9.8e-135, P = 9.8e-135
 Identities = 336/805 (41%), Positives = 443/805 (55%)

Query:     3 TSVGPKLEQR-SNKWLFNNASNILF---FIVVGFANLTNLKILDLSG---CGITTLQGLT 55
             TSV P L +  S K L  + +  LF   F V    NLT+L++LDL      G    Q LT
Sbjct:    93 TSVLPYLNEAVSLKTLILHDN--LFKGGFPVQELINLTSLEVLDLKFNKFSGQLPTQELT 150

Query:    56 KLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDIS 115
              L+NL ALDLS N  SGS + QG+C L+ L E  L     +G +P C    S L+VLD+S
Sbjct:   151 NLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLS 210

Query:   116 YNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTE 175
              N LSG +P  I+   S+EYL+LLDN+FEG F L  +   ++L+V  LSSR+ ML +   
Sbjct:   211 SNHLSGKIPYFISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVET 270

Query:   176 NFLPTFQ--LKVLGLPNYNLKVIPSFXXXXXXXXXXXXSGNNLVGDFPTWVLRNNTKLEA 233
             N     Q  L  + L + NL  IP F            S N L G FPTW+L NNT+L+A
Sbjct:   271 NVSGGLQSQLSSIMLSHCNLGKIPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQA 330

Query:   234 LFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGY 293
             L L NNSF   L LP+T    L  LD+S NN   +LP+D+G+IL  L ++++S+N F G 
Sbjct:   331 LLLQNNSFK-TLTLPRTMRR-LQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGN 388

Query:   294 LPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQL 353
             +PSS+  M+ + F+ L  NNFSG+LP  L TGC SL  L LS N F G I  K  + T L
Sbjct:   389 MPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSL 448

Query:   354 EFLYLENNKFSGKIXXXXXXXXXXXXXXXXXXXXXGHIPHWIGNFSSDLKVLLMSKMFLK 413
               L ++NN F+GKI                     G IP W+GNF   L+VL +S   L+
Sbjct:   449 ITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF--LEVLRISNNRLQ 506

Query:   414 GNIPAQLLNHGSLNLLSVSENCLSG--PMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSS 471
             G IP  L N   L LL +S N LSG  P+ SS +   +  L L  N+L+G IP  L+   
Sbjct:   507 GAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYGYI--LDLHNNNLTGSIPDTLWYGL 564

Query:   472 NLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRI 531
              L  LDLR+N+ SG IP     + ++  +LLR N L G+IP +LC L  + +LD +HNR+
Sbjct:   565 RL--LDLRNNKLSGNIP-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRL 621

Query:   532 SGSIPSCLTIMLLWVAGNVYLHEPY-----LQFFSAIFVGSIGTYYNSTFHFGHYGNGVY 586
             + SIPSC+T +     G+      +     L  F  I+      YY S      +    Y
Sbjct:   622 NESIPSCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTE---VYYESLIVSDRFSLD-Y 677

Query:   587 SIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYN 645
             S+    V+VEF  K RY+LY    +  M GLDLS N+L+G IP E+GDL+ +R LNLS N
Sbjct:   678 SVDFN-VQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRN 736

Query:   646 FLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEXXXXXXXXXXXXXXXGLIPDKGQF 705
              LSGSIPGSFSNL+ IESLDLS N+L G +P +LT                G+IP   QF
Sbjct:   737 SLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQF 796

Query:   706 ATFDESSYRGNLHLCGPTINKSCNSTEEVPATTSIQGEVEDECAI-DTVSLYWSFGASYV 764
              TF E SY GN  LCG    +SC  T     ++  + E +DE  + D V L+WS G +YV
Sbjct:   797 NTFGEKSYLGNFLLCGSPTKRSCGGTT---ISSGKEYEDDDESGLLDIVVLWWSLGTTYV 853

Query:   765 TVILGLFAILWINSNWRRQWFYFID 789
             TV++G    L  +S WRR WF  +D
Sbjct:   854 TVMMGFLVFLCFDSPWRRAWFCLVD 878

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
 Identities = 289/777 (37%), Positives = 409/777 (52%)

Query:    27 FIVVGFANLTNLKILDLSGCGIT-TLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNL 85
             F + G  +LTNL++LDL    +  ++Q L  LK L+ALDLS N  S S E Q +  L NL
Sbjct:   164 FPIKGLKDLTNLELLDLRANKLNGSMQELIHLKKLKALDLSSNKFSSSMELQELQNLINL 223

Query:    86 SEFILRGINIKGHLP-DCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFE 144
                 L   ++ G +P +    L +L+ LD+  N   G +P  + +L  L  L L  N   
Sbjct:   224 EVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLS 283

Query:   145 GTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLK-VLGLPNYNLKVIPSFXXXX 203
             G  L +S ++   LE L LS      S           LK V+ L   +L+ IPSF    
Sbjct:   284 GD-LPSSFSSLESLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQ 342

Query:   204 XXXXXXXXSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNN 263
                     S NNL G+ PTW+L NN +LE L L NNSFT    +P   H+ L   D S N
Sbjct:   343 KKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVHN-LQIFDFSAN 400

Query:   264 NLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLL 323
             N+ GK P+ M   L  L+ ++ S+N F+GY P+SIGEMK + FL L  NNFSG+LP   +
Sbjct:   401 NI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFV 459

Query:   324 TGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIXXXXXXXXXXXXXXXX 383
             TGC+S+  L LS N F G+  P+  N   L+ L ++NN F+G I                
Sbjct:   460 TGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMS 519

Query:   384 XXXXXGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSS 443
                  G IP W+  F   L  +L+S  FL+G IP  LL    L+ L +S N  SG + S 
Sbjct:   520 NNGLSGAIPRWLFEFPY-LDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSH 578

Query:   444 FNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLR 503
              +     +++L  N+ +GPIP  L +S  +  LDLR+N+ SG IP Q  ++ ++  LLL+
Sbjct:   579 VDSELGIYMFLHNNNFTGPIPDTLLKSVQI--LDLRNNKLSGSIP-QFDDTQSINILLLK 635

Query:   504 GNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAI 563
             GN L G IP +LC L  + +LDLS N+++G IPSCL+ +     G +      L    + 
Sbjct:   636 GNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSF---GRLQEDAMALNIPPSF 692

Query:   564 FVGSIGT-YYNSTFHFG--HYGNGVYSIFPQLVKVEFMTKNRYELYNGSN------IKYM 614
                S+    Y STF           Y    Q  +++F  K RY+ Y+G +      ++ M
Sbjct:   693 LQTSLEMELYKSTFLVDKIEVDRSTY----QETEIKFAAKQRYDSYSGRSEFSEGILRLM 748

Query:   615 VGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSG 673
              G+DLS N+L+G IP+E+GDL ++R LNLS+N L GSIP SFS L  +ESLDLSHN L G
Sbjct:   749 YGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQG 808

Query:   674 QVPPRLTEXXXXXXXXXXXXXXXGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTEE 733
              +P  L+                G+IP   QF TF+E SY GN  LCGP  ++SC + + 
Sbjct:   809 SIPQLLSSLTSLAVFDVSSNNLSGIIPQGRQFNTFEEESYLGNPLLCGPPTSRSCETNKS 868

Query:   734 VPATTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQWFYFIDA 790
                  + Q E +D+ AID +  Y+S  + YVT ++G+  ++  +  WRR W   +DA
Sbjct:   869 PEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVDA 925

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 254/791 (32%), Positives = 383/791 (48%)

Query:    19 NNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQG 78
             N  +N +F  +    +LT L +   +  G   L+ L  L NLE LDLS N I GS   + 
Sbjct:   131 NEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLELLDLSGNRIDGSMPVRE 190

Query:    79 VCELKNLSEFILRGINIKGHLP-DCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA 137
                LK L    L    I   +       + +L+ LD+      G LP     L  L +L 
Sbjct:   191 FPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLD 250

Query:   138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRT--NMLSVKTENFLPTFQLKVLGLPNYNLKV 195
             L  N   G  +  S ++   LE L LS  +     S+     L   ++ +    +  ++V
Sbjct:   251 LSSNQLTGN-IPPSFSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQV 309

Query:   196 -IPSFXXXXXXXXXXXXSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHD- 253
              I S                +L    P +++     L  + L+ N  +G +     +++ 
Sbjct:   310 KIESTWQPLFQLSVLVLRLCSLE-KIPNFLMYQKN-LHVVDLSGNRISGIIPTWLLENNP 367

Query:   254 FLHHLDVSNNNLT-GKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGE-MKALIFLRLPK 311
              L  L + NN+ T  ++P  +      L  +D S+N   G  P + G  +  L+ +    
Sbjct:   368 ELEVLQLKNNSFTIFQMPTSV----HNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSN 423

Query:   312 NNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLT-QLEFLYLENNKFSGKIXXX 370
             N F G  P+ +     ++  LDLS NN  G++   +++    L  L L +NKFSG     
Sbjct:   424 NGFQGNFPSSM-GEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPR 482

Query:   371 XXXXXXXXXXXXXXXXXXGHIPHWIGNFSS-DLKVLLMSKMFLKGNIPAQLLNHGSLNLL 429
                               G I   +G  +  DL +L MS  FL+G +P  LL    LN L
Sbjct:   483 QTNFTSLIVLRINNNLFTGKIG--VGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFL 540

Query:   430 SVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPH 489
              +S N LSG + S  +L ++  L+L  N+ +GPIP     S  +  LDLR+N+ SG IP 
Sbjct:   541 DLSGNLLSGALPSHVSLDNV--LFLHNNNFTGPIPDTFLGSIQI--LDLRNNKLSGNIP- 595

Query:   490 QISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGN 549
             Q  ++  + FLLLRGN L G IP+ LC+  ++ +LDLS N+++G IPSC   +   +A  
Sbjct:   596 QFVDTQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARK 655

Query:   550 VYLHEPYLQFFSAIFVGS--IGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYN 607
                 E    ++ A+ + S  +G +Y STF   ++     + F   + V+F TK RY+ Y 
Sbjct:   656 ----EEITNYYVAVALESFYLG-FYKSTFVVENFRLDYSNYFE--IDVKFATKQRYDSYI 708

Query:   608 GS------NIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKW 660
             G+       +  M GLDLS N+L+G IP+E+GDL ++R LNLS+NFLS  IP SFS L+ 
Sbjct:   709 GAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQD 768

Query:   661 IESLDLSHNRLSGQVPPRLTEXXXXXXXXXXXXXXXGLIPDKGQFATFDESSYRGNLHLC 720
             IESLDLS+N L G +P +LT                G+IP   QF TFDE+SY GN  LC
Sbjct:   769 IESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQFNTFDENSYLGNPLLC 828

Query:   721 GPTINKSCNSTEEVPATTSIQGEVED-ECAIDTVSLYWSFGASYVTVILGLFAILWINSN 779
             GP  + SC  T++     +  GE +D E AID +  YWS   +YVT ++G+  ++ ++ +
Sbjct:   829 GPPTDTSCE-TKKNSEENANGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCS 887

Query:   780 WRRQWFYFIDA 790
             WRR W   +DA
Sbjct:   888 WRRAWLRLVDA 898

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-64, P = 2.0e-64
 Identities = 227/757 (29%), Positives = 350/757 (46%)

Query:    34 NLTNLKILDLSGCGIT--TLQGLTKLKNLEALDLSYNNISGSSESQ-GVCELKNLSEFIL 90
             NL NL++L L+ C +T      L +L  +++L L  N + G   ++ G C   +L+ F  
Sbjct:   165 NLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCS--DLTVFTA 222

Query:    91 RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLN 150
                 + G +P  L  L +L++L+++ N L+G +PS +  ++ L+YL+L+ N  +G  +  
Sbjct:   223 AENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQG-LIPK 281

Query:   151 SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK-VIP-SFXXXXXXXXX 208
             SLA+   L+ L LS+  N+     E F    QL  L L N +L   +P S          
Sbjct:   282 SLADLGNLQTLDLSAN-NLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQ 340

Query:   209 XXXSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDV--SNNNLT 266
                SG  L G+ P   L     L+ L L+NNS  G++  P+   + +   D+   NN L 
Sbjct:   341 LVLSGTQLSGEIPV-ELSKCQSLKQLDLSNNSLAGSI--PEALFELVELTDLYLHNNTLE 397

Query:   267 GKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGC 326
             G L   +   L  L ++ +  N  EG LP  I  ++ L  L L +N FSGE+P  +   C
Sbjct:   398 GTLSPSISN-LTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEI-GNC 455

Query:   327 ISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIXXXXXXXXXXXXXXXXXXX 386
              SL ++D+ GN+F G+I P    L +L  L+L  N+  G +                   
Sbjct:   456 TSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQ 515

Query:   387 XXGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNL 446
               G IP   G F   L+ L++    L+GN+P  L++  +L  +++S N L+G +      
Sbjct:   516 LSGSIPSSFG-FLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGS 574

Query:   447 SSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNY 506
             SS     +  N     IP+ L  S NL  L L  N+ +G IP  + +   L  L +  N 
Sbjct:   575 SSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNA 634

Query:   507 LEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVG 566
             L G IP QL   ++L  +DL++N +SG IP        W+     L E  L+  S  FV 
Sbjct:   635 LTGTIPLQLVLCKKLTHIDLNNNFLSGPIPP-------WLGKLSQLGE--LKLSSNQFVE 685

Query:   567 SIGT-YYNST--FHFGHYGNGVYSIFPQLV------KVEFMTKNRYE--LYNG-SNIKYM 614
             S+ T  +N T        GN +    PQ +       V  + KN++   L      +  +
Sbjct:   686 SLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKL 745

Query:   615 VGLDLSCNQLTGGIPSEIGDLQI--RGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLS 672
               L LS N LTG IP EIG LQ     L+LSYN  +G IP +   L  +E+LDLSHN+L+
Sbjct:   746 YELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLT 805

Query:   673 GQVPPRLTEXXXXXXXXXXXXXXXGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTE 732
             G+VP  + +               G +  K QF+ +   S+ GN  LCG  +++ CN   
Sbjct:   806 GEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSPLSR-CN--- 859

Query:   733 EVPATTSIQG-EVEDECAIDTVSLYWSFGASYVTVIL 768
              V +    QG        I  +S   + G   + + L
Sbjct:   860 RVRSNNKQQGLSARSVVIISAISALTAIGLMILVIAL 896

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 6.1e-62, P = 6.1e-62
 Identities = 231/752 (30%), Positives = 346/752 (46%)

Query:     1 MPTSVGPKLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL--QGLTKLK 58
             +P+ +G  +  +S K L +N  N    I   F NL NL++L L+ C +T L      +L 
Sbjct:   136 IPSQLGSLVNLKSLK-LGDNELNGT--IPETFGNLVNLQMLALASCRLTGLIPSRFGRLV 192

Query:    59 NLEALDLSYNNISGSSESQ-GVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYN 117
              L+ L L  N + G   ++ G C   +L+ F      + G LP  L  L +L+ L++  N
Sbjct:   193 QLQTLILQDNELEGPIPAEIGNCT--SLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDN 250

Query:   118 QLSGTLPSAITTLTSLEYLALLDNNFEGTF--LLNSLANHSKLEVLLLSSRTNMLSVKTE 175
               SG +PS +  L S++YL L+ N  +G     L  LAN   L+ L LSS  N+  V  E
Sbjct:   251 SFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELAN---LQTLDLSSN-NLTGVIHE 306

Query:   176 NFLPTFQLKVLGLPNYNLK-VIP-SFXXXXXXXXXXXXSGNNLVGDFPTWVLRNNTKLEA 233
              F    QL+ L L    L   +P +             S   L G+ P  +  N   L+ 
Sbjct:   307 EFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEI-SNCQSLKL 365

Query:   234 LFLTNNSFTGNLQLPKTKHDF--LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFE 291
             L L+NN+ TG  Q+P +      L +L ++NN+L G L   +   L  L    +  N  E
Sbjct:   366 LDLSNNTLTG--QIPDSLFQLVELTNLYLNNNSLEGTLSSSISN-LTNLQEFTLYHNNLE 422

Query:   292 GYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLT 351
             G +P  IG +  L  + L +N FSGE+P  +   C  L  +D  GN   G+I      L 
Sbjct:   423 GKVPKEIGFLGKLEIMYLYENRFSGEMPVEI-GNCTRLQEIDWYGNRLSGEIPSSIGRLK 481

Query:   352 QLEFLYLENNKFSGKIXXXXXXXXXXXXXXXXXXXXXGHIPHWIGNFSSDLKVLLMSKMF 411
              L  L+L  N+  G I                     G IP   G F + L++ ++    
Sbjct:   482 DLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFG-FLTALELFMIYNNS 540

Query:   412 LKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSS 471
             L+GN+P  L+N  +L  ++ S N  +G ++     SS     +  N   G IP+ L +S+
Sbjct:   541 LQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKST 600

Query:   472 NLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRI 531
             NL  L L  N+F+G IP    +   L  L +  N L G IP +L   ++L  +DL++N +
Sbjct:   601 NLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYL 660

Query:   532 SGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGT-YYNSTFHFGHY--GNGVYSI 588
             SG IP+       W+     L E  L+  S  FVGS+ T  ++ T     +  GN +   
Sbjct:   661 SGVIPT-------WLGKLPLLGE--LKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGS 711

Query:   589 FPQLV-KVEFMTK-NRYELYNGSNIKYMVG-------LDLSCNQLTGGIPSEIGDLQI-- 637
              PQ +  ++ +   N  E      +   +G       L LS N LTG IP EIG LQ   
Sbjct:   712 IPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQ 771

Query:   638 RGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEXXXXXXXXXXXXXXXG 697
               L+LSYN  +G IP + S L  +ESLDLSHN+L G+VP ++ +               G
Sbjct:   772 SALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEG 831

Query:   698 LIPDKGQFATFDESSYRGNLHLCGPTINKSCN 729
              +  K QF+ +   ++ GN  LCG  ++  CN
Sbjct:   832 KL--KKQFSRWQADAFVGNAGLCGSPLSH-CN 860

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 215/743 (28%), Positives = 331/743 (44%)

Query:    51 LQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLK 110
             L+ + ++ +L  LD+S+NNI G         L +L    +      G +P  L +L++L+
Sbjct:    98 LRPILRINSLVGLDVSFNNIQGEIPGYAFVNLTSLISLDMCCNRFNGSIPHELFSLTNLQ 157

Query:   111 VLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNML 170
              LD+S N + GTL   I  L +L+ L +LD N  G  + + +   S +E+L L+ R NM 
Sbjct:   158 RLDLSRNVIGGTLSGDIKELKNLQEL-ILDENLIGGAIPSEIG--SLVELLTLTLRQNMF 214

Query:   171 SVKTENFLPTF-QLKVLGLPNYNLKV-IPSFXXXXXXXXXXXXSGNNLVGDFPTWVLRNN 228
             +    + +    +LK + L N  L   IP              S N L G  P+ +  N 
Sbjct:   215 NSSIPSSVSRLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIPSSI-HNL 273

Query:   229 TKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLP-EDMGIILQ--KLLYIDM 285
               LE L L NN+     ++P      L  L V       KL   + G +    KL ++ +
Sbjct:   274 KNLETLQLENNNGLSG-EIPAAWLFGLQKLKVLRLEGNNKLQWNNNGYVFPQFKLTHLSL 332

Query:   286 SDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFP 345
                  EG +P  +    AL++L L  N   G  P  L    + +  + LS N   G + P
Sbjct:   333 RSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKWLAD--LKIRNITLSDNRLTGSLPP 390

Query:   346 KYMNLTQLEFLYLENNKFSGKIXXXXXXXXXXXXXXXXXXXXXGHIPHWIGNFSSDLKVL 405
                    L +L L  N FSG+I                     G +P  I      LK+L
Sbjct:   391 NLFQRPSLYYLVLSRNNFSGQIPDTIGESQVMVLMLSENNFS-GSVPKSITKIPF-LKLL 448

Query:   406 LMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPI 465
              +SK  L G  P +      L  L +S N  SG + + F   S   L +  N+ SG  P 
Sbjct:   449 DLSKNRLSGEFP-RFRPESYLEWLDISSNEFSGDVPAYFG-GSTSMLLMSQNNFSGEFPQ 506

Query:   466 ALFRSSNLITLDLRDNRFSGVIPHQISE-SLTLRFLLLRGNYLEGQIPNQLCQLRRLGVL 524
                  S LI LDL DN+ SG +   IS+ S ++  L LR N L+G IP  +  L  L VL
Sbjct:   507 NFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGISNLTSLKVL 566

Query:   525 DLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNG 584
             DLS N + G +PS L  +   +       EP     SA+   +I  Y++S     +    
Sbjct:   567 DLSENNLDGYLPSSLGNLTCMIKSP----EP-----SAM---TIRPYFSSYTDIPNIERL 614

Query:   585 VYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLS 643
             +      +  +    KN  ++    N      LDLS N+L G IP+ +G+L+ ++ LNLS
Sbjct:   615 IEIESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLS 674

Query:   644 YNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEXXXXXXXXXXXXXXXGLIPDKG 703
              N  SG IP SF +L+ +ESLDLSHN L+G++P  L++               G IP+  
Sbjct:   675 NNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESP 734

Query:   704 QFATFDESS-YRGNLHLCGPTINKSCNSTE-EVPATTSIQGEVEDECAIDTVSLYWSFGA 761
             Q    +  + Y  N  +CG  I   C  T+ + PA    + + E+E   +T+   +S+ A
Sbjct:   735 QLDRLNNPNIYANNSGICGMQIQVPCFPTQTKQPAEEKEEEDKEEE---ETI---FSWNA 788

Query:   762 SYVTVILG-LFAILWINSN--WR 781
             + +    G L A+++++ N  W+
Sbjct:   789 AAIGCSCGFLIAVVFMSYNELWK 811

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	790
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-62
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-54
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-52
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-49
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  226 bits (578), Expect = 2e-62
 Identities = 176/576 (30%), Positives = 280/576 (48%), Gaps = 72/576 (12%)

Query: 182 QLKVLGLPNYNL--KVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN 239
           ++  + L   N+  K+  +     Y ++ ++LS N L G  P  +   ++ L  L L+NN
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPY-IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 240 SFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGII----------------------- 276
           +FTG++  P+     L  LD+SNN L+G++P D+G                         
Sbjct: 129 NFTGSI--PRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSG 336
           L  L ++ ++ N+  G +P  +G+MK+L ++ L  NN SGE+P  +  G  SL  LDL  
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVY 245

Query: 337 NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIG 396
           NN  G I     NL  L++L+L  NK SG I   + +  +L  LD+S+N LSG IP  + 
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

Query: 397 NFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF----NLSSLEHL 452
              + L++L +      G IP  L +   L +L +  N  SG +  +     NL+ L+  
Sbjct: 306 QLQN-LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD-- 362

Query: 453 YLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIP 512
            L  N+L+G IP  L  S NL  L L  N   G IP  +    +LR + L+ N   G++P
Sbjct: 363 -LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

Query: 513 NQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAI---FVGSIG 569
           ++  +L  +  LD+S+N + G I S    M            P LQ  S     F G + 
Sbjct: 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDM------------PSLQMLSLARNKFFGGLP 469

Query: 570 TYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGS---NIKYMVGLDLSCNQLTG 626
             + S                +L  ++ +++N++         ++  ++ L LS N+L+G
Sbjct: 470 DSFGSK---------------RLENLD-LSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513

Query: 627 GIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFL 685
            IP E+   + +  L+LS+N LSG IP SFS +  +  LDLS N+LSG++P  L  +  L
Sbjct: 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573

Query: 686 SNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCG 721
              N+S N+L G +P  G F   + S+  GN+ LCG
Sbjct: 574 VQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  200 bits (511), Expect = 9e-54
 Identities = 172/502 (34%), Positives = 247/502 (49%), Gaps = 62/502 (12%)

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLT-SLEYLALLDNNFEGTFL 148
           L G NI G +   +  L +++ +++S NQLSG +P  I T + SL YL L +NNF G+  
Sbjct: 76  LSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP 135

Query: 149 LNSLANHSKLEVLLLSSRTNMLSVKTENFLPTF-QLKVLGLP-NYNLKVIPSFLLHQYDL 206
             S+ N   LE L LS+  NMLS +  N + +F  LKVL L  N  +  IP+ L +   L
Sbjct: 136 RGSIPN---LETLDLSN--NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190

Query: 207 KLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLT 266
           + L L+ N LVG  P   L     L+ ++L  N+ +G +         L+HLD+  NNLT
Sbjct: 191 EFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249

Query: 267 GKLPEDMGII-----------------------LQKLLYIDMSDNRFEGYLPSSIGEMKA 303
           G +P  +G +                       LQKL+ +D+SDN   G +P  + +++ 
Sbjct: 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309

Query: 304 LIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQI---FPKYMNLTQLEFLYLEN 360
           L  L L  NNF+G++P  L T    L +L L  N F G+I     K+ NLT L+   L  
Sbjct: 310 LEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD---LST 365

Query: 361 NKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMF--------- 411
           N  +G+I EGL +S  L +L + +N L G IP  +G   S  +V L    F         
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425

Query: 412 --------------LKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMN 457
                         L+G I ++  +  SL +LS++ N   G +  SF    LE+L L  N
Sbjct: 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN 485

Query: 458 SLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQ 517
             SG +P  L   S L+ L L +N+ SG IP ++S    L  L L  N L GQIP    +
Sbjct: 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545

Query: 518 LRRLGVLDLSHNRISGSIPSCL 539
           +  L  LDLS N++SG IP  L
Sbjct: 546 MPVLSQLDLSQNQLSGEIPKNL 567

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  195 bits (497), Expect = 7e-52
 Identities = 168/529 (31%), Positives = 242/529 (45%), Gaps = 95/529 (17%)

Query: 211 LSGNNLVGDFPTW---VLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTG 267
           LS  N   D   W      N++++ ++ L+  + +G +     +  ++  +++SNN L+G
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 268 KLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCI 327
            +P+D+      L Y+++S+N F G +P   G +  L  L L  N  SGE+P  +  G  
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI--GSF 163

Query: 328 S-LGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNL 386
           S L +LDL GN   G+I     NLT LEFL L +N+  G+I   L     L  + +  N 
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 387 LSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-N 445
           LSG IP+ IG  +S                    LNH     L +  N L+GP+ SS  N
Sbjct: 224 LSGEIPYEIGGLTS--------------------LNH-----LDLVYNNLTGPIPSSLGN 258

Query: 446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN 505
           L +L++L+L  N LSGPIP ++F    LI+LDL DN  SG IP  + +   L  L L  N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 506 YLEGQIPNQLCQLRRL------------------------GVLDLSHNRISGSIPSCLTI 541
              G+IP  L  L RL                         VLDLS N ++G IP  L  
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC- 377

Query: 542 MLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNST-------FHFGHYGNGVYSIFPQLVK 594
                +GN++     L  FS    G I     +             +   + S F +L  
Sbjct: 378 ----SSGNLF----KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL 429

Query: 595 VEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPG 653
           V F                   LD+S N L G I S   D+  ++ L+L+ N   G +P 
Sbjct: 430 VYF-------------------LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 654 SFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK 702
           SF + K +E+LDLS N+ SG VP +L  L+ L    +S N LSG IPD+
Sbjct: 471 SFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  186 bits (474), Expect = 5e-49
 Identities = 165/525 (31%), Positives = 242/525 (46%), Gaps = 89/525 (16%)

Query: 36  TNLKILDLSGCGIT--TLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
           ++LK+LDL G  +       LT L +LE L L+ N + G    + + ++K+L    L   
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYN 222

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
           N+ G +P  +  L+ L  LD+ YN L+G +PS++  L +L+YL L  N   G  +  S+ 
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-IPPSIF 281

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSG 213
           +  KL  L LS   N LS +                      IP  ++   +L++L L  
Sbjct: 282 SLQKLISLDLSD--NSLSGE----------------------IPELVIQLQNLEILHLFS 317

Query: 214 NNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPE-- 271
           NN  G  P   L +  +L+ L L +N F+G +     KH+ L  LD+S NNLTG++PE  
Sbjct: 318 NNFTGKIPV-ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376

Query: 272 -DMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLG 330
              G + + +L+     N  EG +P S+G  ++L  +RL  N+FSGELP+   T    + 
Sbjct: 377 CSSGNLFKLILF----SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVY 431

Query: 331 LLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGH 390
            LD+S NN  G+I  +  ++  L+ L L  NKF G + +    S  L  LD+S N  SG 
Sbjct: 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGA 490

Query: 391 IPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLE 450
           +P  +G+ S                                                 L 
Sbjct: 491 VPRKLGSLSE------------------------------------------------LM 502

Query: 451 HLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQ 510
            L L  N LSG IP  L     L++LDL  N+ SG IP   SE   L  L L  N L G+
Sbjct: 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562

Query: 511 IPNQLCQLRRLGVLDLSHNRISGSIPSC---LTIMLLWVAGNVYL 552
           IP  L  +  L  +++SHN + GS+PS    L I    VAGN+ L
Sbjct: 563 IPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.0 bits (187), Expect = 3e-14
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 24/171 (14%)

Query: 616 GLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQ 674
           GL L    L G IP++I  L+ ++ +NLS N + G+IP S  ++  +E LDLS+N  +G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 675 VPPRLTELNFLSNFNVSFNNLSGLIPDK--GQFATFDESSYRGNLHLCGPTINKSCNSTE 732
           +P  L +L  L   N++ N+LSG +P    G+       ++  N  LCG    ++C    
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHL 541

Query: 733 EVPATTSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQ 783
            V A   I                 +FG S   + L + A+ W    W+R+
Sbjct: 542 SVGAKIGI-----------------AFGVSVAFLFLVICAMCW----WKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 6e-09
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 609 SNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLS 667
           S ++++  ++LS N + G IP  +G +  +  L+LSYN  +GSIP S   L  +  L+L+
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 668 HNRLSGQVPPRL-------TELNFLSN 687
            N LSG+VP  L          NF  N
Sbjct: 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 6e-09
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 6/97 (6%)

Query: 249 KTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLR 308
                F+  L + N  L G +P D+   L+ L  I++S N   G +P S+G + +L  L 
Sbjct: 414 TKGKWFIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 309 LPKNNFSGELPAPL--LTGCISLGLLDLSGNNFYGQI 343
           L  N+F+G +P  L  LT   SL +L+L+GN+  G++
Sbjct: 473 LSYNSFNGSIPESLGQLT---SLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 28/70 (40%), Positives = 40/70 (57%)

Query: 446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN 505
           L  L+ + L  NS+ G IP +L   ++L  LDL  N F+G IP  + +  +LR L L GN
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 506 YLEGQIPNQL 515
            L G++P  L
Sbjct: 501 SLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 6e-08
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 5/94 (5%)

Query: 231 LEALFLTNNSFTGNL--QLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDN 288
           ++ L L N    G +   + K +H  L  +++S N++ G +P  +G I   L  +D+S N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRH--LQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYN 476

Query: 289 RFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL 322
            F G +P S+G++ +L  L L  N+ SG +PA L
Sbjct: 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 25/64 (39%), Positives = 42/64 (65%)

Query: 82  LKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDN 141
           L++L    L G +I+G++P  L +++ L+VLD+SYN  +G++P ++  LTSL  L L  N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 142 NFEG 145
           +  G
Sbjct: 501 SLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 637 IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLS 696
           I GL L    L G IP   S L+ ++S++LS N + G +PP L  +  L   ++S+N+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 697 GLIPDK-GQFATFDESSYRGN 716
           G IP+  GQ  +    +  GN
Sbjct: 480 GSIPESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 5e-07
 Identities = 27/64 (42%), Positives = 36/64 (56%)

Query: 476 LDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSI 535
           L L +    G IP+ IS+   L+ + L GN + G IP  L  +  L VLDLS+N  +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 536 PSCL 539
           P  L
Sbjct: 483 PESL 486

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 380 LDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGP 439
           L + N  L G IP+ I      L+ + +S   ++GNIP  L +  SL +L +S N  +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH-LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 440 MTSSF-NLSSLEHLYLQMNSLSGPIPIAL 467
           +  S   L+SL  L L  NSLSG +P AL
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 8e-06
 Identities = 32/93 (34%), Positives = 46/93 (49%)

Query: 452 LYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQI 511
           L L    L G IP  + +  +L +++L  N   G IP  +    +L  L L  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 512 PNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLL 544
           P  L QL  L +L+L+ N +SG +P+ L   LL
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query: 332 LDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI 391
           ++LSGN+  G I P   ++T LE L L  N F+G I E L     L  L+++ N LSG +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 392 PHWIG 396
           P  +G
Sbjct: 507 PAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 332 LDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI 391
           L L      G I      L  L+ + L  N   G I   L +   L  LD+S N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 392 PHWIGNFSSDLKVLLMSKMFLKGNIPAQL 420
           P  +G  +S L++L ++   L G +PA L
Sbjct: 483 PESLGQLTS-LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 21/36 (58%), Positives = 24/36 (66%)

Query: 36 TNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNIS 71
          TNL+ LDLS   IT L  L+ L NLE LDLS N I+
Sbjct: 1  TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 7e-05
 Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 10/193 (5%)

Query: 17  LFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSE 75
             + + N +  +     NL NLK LDLS   ++ L   L+ L NL  LDLS N I   S+
Sbjct: 144 ELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI---SD 200

Query: 76  SQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEY 135
                EL +  E +    N    L   L NL +L  L++S N+L   LP +I  L++LE 
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLET 259

Query: 136 LALLDNNFEGTFLLNSLANHSKLEVLLLS--SRTNMLSVKTENFLPTFQLKVLGLPNYNL 193
           L L +N       ++SL + + L  L LS  S +N L +     L    L  L L    L
Sbjct: 260 LDLSNNQ---ISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKAL 316

Query: 194 KVIPSFLLHQYDL 206
           ++  + +L   ++
Sbjct: 317 ELKLNSILLNNNI 329

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 9e-05
 Identities = 78/296 (26%), Positives = 117/296 (39%), Gaps = 15/296 (5%)

Query: 196 IPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFL 255
               LL+   L  LDL+ N L  +    +    T L +L L NN+ T    L       L
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISELL--ELTNLTSLDLDNNNITDIPPLIGLLKSNL 142

Query: 256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFS 315
             LD+S+N +   LP  +   L  L  +D+S N     LP  +  +  L  L L  N  S
Sbjct: 143 KELDLSDNKIE-SLPSPLRN-LPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS 199

Query: 316 GELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSN 375
            +LP P +    +L  LDLS NN   ++     NL  L  L L NNK    + E + N +
Sbjct: 200 -DLP-PEIELLSALEELDLS-NNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLS 255

Query: 376 ELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENC 435
            L  LD+SNN +S      +G+ ++  ++ L             LL      LL++    
Sbjct: 256 NLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313

Query: 436 LSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQI 491
            +  +  +  L +   L     S     P AL    +L  L   DN       ++ 
Sbjct: 314 KALELKLNSILLNNNILSNGETSS----PEALSILESLNNLWTLDNALDESNLNRY 365

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 9e-05
 Identities = 81/280 (28%), Positives = 124/280 (44%), Gaps = 16/280 (5%)

Query: 34  NLTNLKILDLSGCGIT-TLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG 92
           NL  L  LDL+   +   +  L +L NL +LDL  NNI+      G+    NL E  L  
Sbjct: 91  NLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGL-LKSNLKELDLSD 149

Query: 93  INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSL 152
             I+  LP  L+NL +LK LD+S+N LS  LP  ++ L++L  L L  N          L
Sbjct: 150 NKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIEL 207

Query: 153 ANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLS 212
            +   LE L LS+ + +  + + + L    L  L L N  L+ +P  + +  +L+ LDLS
Sbjct: 208 LSA--LEELDLSNNSIIELLSSLSNLK--NLSGLELSNNKLEDLPESIGNLSNLETLDLS 263

Query: 213 GNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPED 272
            NN +    +  L + T L  L L+ NS +  L L       L  L      L     + 
Sbjct: 264 -NNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKL 320

Query: 273 MGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKN 312
             I+L   +      +  E   P ++  +++L  L    N
Sbjct: 321 NSILLNNNI-----LSNGETSSPEALSILESLNNLWTLDN 355

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 31  GFANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
              +L+ L  L LS   ++      L+  K L +LDLS+N +SG   +    E+  LS+ 
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQL 552

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPS 125
            L    + G +P  L N+  L  ++IS+N L G+LPS
Sbjct: 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 8/94 (8%)

Query: 83  KNLSEFILRGINI-----KGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA 137
               ++ + G+ +     +G +P+ +  L HL+ +++S N + G +P ++ ++TSLE L 
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLS 171
           L  N+F G+ +  SL   + L +L L+   N LS
Sbjct: 473 LSYNSFNGS-IPESLGQLTSLRILNLNG--NSLS 503

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 74/312 (23%), Positives = 105/312 (33%), Gaps = 53/312 (16%)

Query: 38  LKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCEL---KNLSEFILRGIN 94
           LK   L     T L  L KL  L+ L L  N +   +       L    +L E  L    
Sbjct: 5   LKGELLKTERATEL--LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE 62

Query: 95  IKGH------LPDCLKNLSHLKVLDISYNQLSGTLP---SAITTLTSLEYLALLDNNFEG 145
                     L   L     L+ LD+S N L         ++   +SL+ L L +N    
Sbjct: 63  TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122

Query: 146 T---FLLNSLANHS-KLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLL 201
                L   L +    LE L+L                        L   + + +   L 
Sbjct: 123 RGLRLLAKGLKDLPPALEKLVLGRN--------------------RLEGASCEALAKALR 162

Query: 202 HQYDLKLLDLSGNNLVGD-FPTWV--LRNNTKLEALFLTNNSFT--GNLQLPKTKHD--F 254
              DLK L+L+ N +           L+ N  LE L L NN  T  G   L +T      
Sbjct: 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222

Query: 255 LHHLDVSNNNLTG----KLPEDMGIILQKLLYIDMSDNRFEGY----LPSSIGEMKALIF 306
           L  L++ +NNLT      L   +      LL + +S N         L   + E ++L+ 
Sbjct: 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282

Query: 307 LRLPKNNFSGEL 318
           L L  N F  E 
Sbjct: 283 LDLRGNKFGEEG 294

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 186 LGLPNYNLK-VIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGN 244
           LGL N  L+  IP+ +     L+ ++LSGN++ G+ P   L + T LE L L+ NSF G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGS 481

Query: 245 LQLPKTKHDFLHHLDVSNNNLTGKLPEDMG 274
           +     +   L  L+++ N+L+G++P  +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 72/241 (29%), Positives = 106/241 (43%), Gaps = 12/241 (4%)

Query: 138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP 197
           L  N       ++ L   + L  L L +  N+  +     L    LK L L +  ++ +P
Sbjct: 98  LDLNLNRLRSNISELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNKIESLP 156

Query: 198 SFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHH 257
           S L +  +LK LDLS N+L  D P  +L N + L  L L+ N  + +L         L  
Sbjct: 157 SPLRNLPNLKNLDLSFNDLS-DLP-KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEE 213

Query: 258 LDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGE 317
           LD+SNN++  +L   +   L+ L  +++S+N+ E  LP SIG +  L  L L  N  S  
Sbjct: 214 LDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS- 269

Query: 318 LPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNEL 377
                L    +L  LDLSGN+    +      L  L    L N   + K  E   NS  L
Sbjct: 270 --ISSLGSLTNLRELDLSGNSLSNALPLI--ALLLLLLELLLNLLLTLKALELKLNSILL 325

Query: 378 N 378
           N
Sbjct: 326 N 326

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGK 268
           L L    L G  P  + +    L+++ L+ NS  GN+         L  LD+S N+  G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 269 LPEDMGIILQKLLYIDMSDNRFEGYLPSSIG 299
           +PE +G  L  L  ++++ N   G +P+++G
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 84  NLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNF 143
           NL    L    +        K L +LKVLD+S N L+   P A + L SL  L L  NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 472 NLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRI 531
           NL +LDL +NR + +          L+ L L GN L    P     L  L  LDLS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 27/85 (31%)

Query: 37  NLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN 94
           NLK LDLS   +T +       L NL+ LDLS NN++  S                    
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-------------------- 40

Query: 95  IKGHLPDCLKNLSHLKVLDISYNQL 119
                P+    L  L+ LD+S N L
Sbjct: 41  -----PEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 32 FANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNI 70
          F  L NLK+LDLSG  +T++  +  + L +L +LDLS NN+
Sbjct: 20 FKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	790
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.94
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
PLN03150	623	hypothetical protein; Provisional	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.27
PLN03150	623	hypothetical protein; Provisional	99.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.97
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.59
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.4
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.24
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.21
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.14
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.13
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.06
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.03
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.02
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.77
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.6
PRK15386	426	type III secretion protein GogB; Provisional	97.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.57
KOG4341	483	consensus F-box protein containing LRR [General fu	97.44
KOG4341	483	consensus F-box protein containing LRR [General fu	97.44
PRK15386	426	type III secretion protein GogB; Provisional	97.38
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.38
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.36
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.73
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.69
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.53
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.52
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.32
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.33
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.18
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.96
KOG4308	478	consensus LRR-containing protein [Function unknown	91.61
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.42
KOG4308	478	consensus LRR-containing protein [Function unknown	91.22
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.18
smart00370	26	LRR Leucine-rich repeats, outliers.	91.18
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.96
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.63
smart00370	26	LRR Leucine-rich repeats, outliers.	87.63
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.43
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.76
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.42

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.6e-65  Score=622.33  Aligned_cols=540  Identities=36%  Similarity=0.541  Sum_probs=478.5

Q ss_pred             CCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhc-CCCCCCEEeCcCCcCccccchhhhhCCCCCcE
Q 036932           82 LKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAIT-TLTSLEYLALLDNNFEGTFLLNSLANHSKLEV  160 (790)
Q Consensus        82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  160 (790)
                      ..+++.|+|++|.+.+.++..|..+++|++|+|++|++++.+|..+. .+++|++|++++|.+++.+|.   ..+++   
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~---  141 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPN---  141 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCC---
Confidence            34677888888888777777788888888888888888776766543 778888888888877766553   23344   


Q ss_pred             EEccCCCCCcccccCCCCCCccceEEeCCCCCC-CCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCC
Q 036932          161 LLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNL-KVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN  239 (790)
Q Consensus       161 L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n  239 (790)
                                            |++|++++|.+ +.+|..+..+++|++|++++|.+.+.+|..+ .++++|++|++++|
T Consensus       142 ----------------------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n  198 (968)
T PLN00113        142 ----------------------LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASN  198 (968)
T ss_pred             ----------------------CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCC
Confidence                                  45555555556 4677778888888888888888887888765 47888888888888


Q ss_pred             cccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccC
Q 036932          240 SFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELP  319 (790)
Q Consensus       240 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~  319 (790)
                      .+.+..+..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|
T Consensus       199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  277 (968)
T PLN00113        199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP  277 (968)
T ss_pred             CCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence            88877666677888999999999999888888875 58999999999999999999999999999999999999988888


Q ss_pred             hhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhcc
Q 036932          320 APLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFS  399 (790)
Q Consensus       320 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~  399 (790)
                      ..+ ..+++|++|++++|.+.+.+|..+.++++|++|++++|.+++..|..+..+++|+.|++++|.+.+.+|..++.+.
T Consensus       278 ~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~  356 (968)
T PLN00113        278 PSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN  356 (968)
T ss_pred             hhH-hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence            765 5789999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEec
Q 036932          400 SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDL  478 (790)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L  478 (790)
                      . |+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+ .+++|+.|++++|++++.+|..+..++.|+.|++
T Consensus       357 ~-L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  435 (968)
T PLN00113        357 N-LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI  435 (968)
T ss_pred             C-CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence            8 9999999999999999999999999999999999999999888 8999999999999999999999999999999999


Q ss_pred             cCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccc
Q 036932          479 RDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQ  558 (790)
Q Consensus       479 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~  558 (790)
                      ++|++++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..+..                 
T Consensus       436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~-----------------  497 (968)
T PLN00113        436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS-----------------  497 (968)
T ss_pred             cCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh-----------------
Confidence            9999999999999999999999999999999988876 4689999999999999998876643                 


Q ss_pred             cccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-e
Q 036932          559 FFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-I  637 (790)
Q Consensus       559 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L  637 (790)
                                                                          ++.|+.|+|++|+++|.+|..++.+. |
T Consensus       498 ----------------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  525 (968)
T PLN00113        498 ----------------------------------------------------LSELMQLKLSENKLSGEIPDELSSCKKL  525 (968)
T ss_pred             ----------------------------------------------------hhccCEEECcCCcceeeCChHHcCccCC
Confidence                                                                45789999999999999999999998 9


Q ss_pred             cceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCc
Q 036932          638 RGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNL  717 (790)
Q Consensus       638 ~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~  717 (790)
                      ++|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|++||+++|+++|.+|..++|.++...++.||+
T Consensus       526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~  605 (968)
T PLN00113        526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI  605 (968)
T ss_pred             CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 036932          718 HLCGPT  723 (790)
Q Consensus       718 ~lcg~~  723 (790)
                      ++||.+
T Consensus       606 ~lc~~~  611 (968)
T PLN00113        606 DLCGGD  611 (968)
T ss_pred             cccCCc
Confidence            999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.5e-59  Score=568.56  Aligned_cols=533  Identities=34%  Similarity=0.504  Sum_probs=385.6

Q ss_pred             CCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccC-CCCCCcEEEccCCCCCCCChhhhcCCCCCCEEe
Q 036932           59 NLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLK-NLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA  137 (790)
Q Consensus        59 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  137 (790)
                      +++.|+|++|.+.+..+ ..+..+++|++|+|++|++.+.+|..+. ++++|++|+|++|++++.+|.  +.+++|++|+
T Consensus        70 ~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         70 RVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             cEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            44444555444443332 2344445555555555554444443322 455555555555555444442  2344555555


Q ss_pred             CcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCC
Q 036932          138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLV  217 (790)
Q Consensus       138 Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~  217 (790)
                      +++|.+++.+| ..+.++++|++|++++|...                        +.+|..+.++++|++|++++|.++
T Consensus       147 Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~------------------------~~~p~~~~~l~~L~~L~L~~n~l~  201 (968)
T PLN00113        147 LSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLV------------------------GKIPNSLTNLTSLEFLTLASNQLV  201 (968)
T ss_pred             CcCCcccccCC-hHHhcCCCCCEEECccCccc------------------------ccCChhhhhCcCCCeeeccCCCCc
Confidence            55555544333 22344444444444333211                        123333444444445555555444


Q ss_pred             CcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchh
Q 036932          218 GDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSS  297 (790)
Q Consensus       218 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~  297 (790)
                      +.+|..+ .++++|++|++++|.+++..+..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..
T Consensus       202 ~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~  279 (968)
T PLN00113        202 GQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPS  279 (968)
T ss_pred             CcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchh
Confidence            4444433 2445555555555555444333444556666666666666666676654 4777788888887777777777


Q ss_pred             hhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCC
Q 036932          298 IGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNEL  377 (790)
Q Consensus       298 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  377 (790)
                      +.++++|++|++++|.+.+.+|.. +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|
T Consensus       280 l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L  358 (968)
T PLN00113        280 IFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL  358 (968)
T ss_pred             HhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence            777888888888888877666654 3577888888888888887777778888888888888888888888888888888


Q ss_pred             cEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccC
Q 036932          378 NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQM  456 (790)
Q Consensus       378 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~  456 (790)
                      +.|++++|++.+.+|.+++.... ++.|++++|.+.+.+|..+..+++|+.|++++|.+++..|..+ .++.|+.|++++
T Consensus       359 ~~L~Ls~n~l~~~~p~~~~~~~~-L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  437 (968)
T PLN00113        359 TVLDLSTNNLTGEIPEGLCSSGN-LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN  437 (968)
T ss_pred             cEEECCCCeeEeeCChhHhCcCC-CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence            88888888888888888888777 8888888888888888888889999999999999998888877 889999999999


Q ss_pred             CcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932          457 NSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP  536 (790)
Q Consensus       457 n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p  536 (790)
                      |.+++.+|..+..+++|+.|++++|++.+.+|..+. .++|+.|++++|++++.+|..+..+++|+.|++++|++.|.+|
T Consensus       438 N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  516 (968)
T PLN00113        438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP  516 (968)
T ss_pred             CcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence            999998898888999999999999999988887664 5889999999999999999999999999999999999999998


Q ss_pred             hhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceE
Q 036932          537 SCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVG  616 (790)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  616 (790)
                      ..+..                                                                     ++.|+.
T Consensus       517 ~~~~~---------------------------------------------------------------------l~~L~~  527 (968)
T PLN00113        517 DELSS---------------------------------------------------------------------CKKLVS  527 (968)
T ss_pred             hHHcC---------------------------------------------------------------------ccCCCE
Confidence            76532                                                                     568999


Q ss_pred             EECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCc
Q 036932          617 LDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNN  694 (790)
Q Consensus       617 L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~  694 (790)
                      |+|++|.++|.+|..++.+. |+.|||++|+++|.+|..++++++|+.||+++|+++|.+|.. +....+....+.+|+
T Consensus       528 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             EECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            99999999999999999987 999999999999999999999999999999999999999975 334445555666776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.4e-42  Score=340.21  Aligned_cols=498  Identities=27%  Similarity=0.360  Sum_probs=320.1

Q ss_pred             ccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCC
Q 036932           78 GVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSK  157 (790)
Q Consensus        78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~  157 (790)
                      .++.-..|+.+++++|.+.. +.+.+.++..|.+|++++|++. ..|++++.+..++.++.++|++. .+|. .+..+.+
T Consensus        40 ~wW~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~  115 (565)
T KOG0472|consen   40 NWWEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLIS  115 (565)
T ss_pred             hhhhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhh
Confidence            34444566677777777663 3344667777777777777776 55666777777777777777765 4443 2333333


Q ss_pred             CcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEecc
Q 036932          158 LEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLT  237 (790)
Q Consensus       158 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~  237 (790)
                      +                         ..++++.|.+.++|+.++.+..++.++..+|+++ +.|..++ .+.++..+++.
T Consensus       116 l-------------------------~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~-~~~~l~~l~~~  168 (565)
T KOG0472|consen  116 L-------------------------VKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMV-NLSKLSKLDLE  168 (565)
T ss_pred             h-------------------------hhhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHH-HHHHHHHhhcc
Confidence            3                         3334444445555666666666666666666666 5555544 45555555555


Q ss_pred             CCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccc
Q 036932          238 NNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGE  317 (790)
Q Consensus       238 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  317 (790)
                      +|.+....+... .++.|++||...|.+. .+|..++. +.+|+.|++..|++. ..| .|.++..|++++++.|++. .
T Consensus       169 ~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~  242 (565)
T KOG0472|consen  169 GNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-M  242 (565)
T ss_pred             ccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-h
Confidence            555543321111 2444555555555554 66666653 666666777777666 455 5666666777777777666 6


Q ss_pred             cChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhh
Q 036932          318 LPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGN  397 (790)
Q Consensus       318 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  397 (790)
                      +|....+.++++.+||+.+|+++ ..|+.+.-+.+|+.||+++|.++ .+|..++++ .|+.|.+.+|++. .+-..+-+
T Consensus       243 lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~  318 (565)
T KOG0472|consen  243 LPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIIS  318 (565)
T ss_pred             hHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHc
Confidence            66666666666666666666665 34555556666666666666666 345556666 5666666666654 22221111


Q ss_pred             ccC--CCeEEEccCccccccchhhhccCCCCCEEecCC-ccccCcccccccccccceeeccCCcCccccchhhcCCCC--
Q 036932          398 FSS--DLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSE-NCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSN--  472 (790)
Q Consensus       398 ~~~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~--  472 (790)
                      ...  -|++|.-   .++..   .+.+-   +.=.-+. ....+..|....+.+.+.|++++-+++ .+|...+....  
T Consensus       319 ~gT~~vLKyLrs---~~~~d---glS~s---e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~  388 (565)
T KOG0472|consen  319 KGTQEVLKYLRS---KIKDD---GLSQS---EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSE  388 (565)
T ss_pred             ccHHHHHHHHHH---hhccC---CCCCC---cccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhc
Confidence            110  0111100   00000   00000   0000000 001112222225668889999999998 66766655544  


Q ss_pred             -CcEEeccCCcccccCchhhhcCccccE-EeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccc
Q 036932          473 -LITLDLRDNRFSGVIPHQISESLTLRF-LLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNV  550 (790)
Q Consensus       473 -L~~L~L~~N~l~~~~p~~~~~l~~L~~-L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~  550 (790)
                       ...++++.|++. ++|..+..+..+.+ +.+++|.+ +-+|..++.+++|..|+|++|.+. .+|..++.         
T Consensus       389 ~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~---------  456 (565)
T KOG0472|consen  389 IVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS---------  456 (565)
T ss_pred             ceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhh---------
Confidence             889999999998 78888888877665 45555555 488999999999999999999987 88877654         


Q ss_pred             cCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCCh
Q 036932          551 YLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPS  630 (790)
Q Consensus       551 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~  630 (790)
                                                                                  +..|+.||+|.|+|. .+|+
T Consensus       457 ------------------------------------------------------------lv~Lq~LnlS~NrFr-~lP~  475 (565)
T KOG0472|consen  457 ------------------------------------------------------------LVRLQTLNLSFNRFR-MLPE  475 (565)
T ss_pred             ------------------------------------------------------------hhhhheecccccccc-cchH
Confidence                                                                        335899999999998 8999


Q ss_pred             hhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCC
Q 036932          631 EIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK  702 (790)
Q Consensus       631 ~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  702 (790)
                      ++-.+. ++.+-.++|++...-|+.+++|.+|..|||.+|.|. .||..+++|++|+.|++++|++.  .|..
T Consensus       476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence            988887 777777779999777777999999999999999998 89999999999999999999998  5644

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=7.8e-41  Score=329.63  Aligned_cols=488  Identities=25%  Similarity=0.314  Sum_probs=372.5

Q ss_pred             ChhhhcCCCCCCEEEcCCCCCC-ccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCC
Q 036932           28 IVVGFANLTNLKILDLSGCGIT-TLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNL  106 (790)
Q Consensus        28 ~~~~~~~l~~L~~L~Ls~n~i~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  106 (790)
                      -......-..|..|++++|.+. ..+.+.++..|.+|++.+|++...++  ++..+..++.++.+.|.++ .+|+.++.+
T Consensus        37 e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~--aig~l~~l~~l~vs~n~ls-~lp~~i~s~  113 (565)
T KOG0472|consen   37 EGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPA--AIGELEALKSLNVSHNKLS-ELPEQIGSL  113 (565)
T ss_pred             chhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCH--HHHHHHHHHHhhcccchHh-hccHHHhhh
Confidence            3344555566777777777777 33467777777788887777765543  5677777777777777777 567777777


Q ss_pred             CCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEE
Q 036932          107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVL  186 (790)
Q Consensus       107 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L  186 (790)
                      .+|+.++.++|.+. ..|+.++.+..|+.++..+|+++ ..| ..+.++.++..+++.+|......  ++...+..|+++
T Consensus       114 ~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~~l~--~~~i~m~~L~~l  188 (565)
T KOG0472|consen  114 ISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLKALP--ENHIAMKRLKHL  188 (565)
T ss_pred             hhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCc-hHHHHHHHHHHhhccccchhhCC--HHHHHHHHHHhc
Confidence            88888888888777 56667777777888888777776 444 34667777777777776643222  123346788888


Q ss_pred             eCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCC
Q 036932          187 GLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLT  266 (790)
Q Consensus       187 ~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~  266 (790)
                      ++..|-++.+|..++.+.+|.-|+|..|.+. .+|+  |.+|..|++++++.|++.-........++++.+||+.+|++.
T Consensus       189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  189 DCNSNLLETLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             ccchhhhhcCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc
Confidence            8888889999999999999999999999998 7885  558899999999999988665444558889999999999999


Q ss_pred             ccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCc--CcEE-------EccCC
Q 036932          267 GKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCIS--LGLL-------DLSGN  337 (790)
Q Consensus       267 ~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~--L~~L-------~L~~n  337 (790)
                       +.|..++. +.+|++||+|+|.++ ..|.+++++ .|+.|.+.+|.+. ++-.++..+=+.  |++|       .++..
T Consensus       266 -e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~s  340 (565)
T KOG0472|consen  266 -EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQS  340 (565)
T ss_pred             -cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence             89999875 889999999999999 688899999 9999999999887 555444321110  1111       11111


Q ss_pred             cC--------cccccccccCCCCCcEEEcCCcccccccccccCCCC---CCcEEEcccccCcCCCchhhhhccCCCeEEE
Q 036932          338 NF--------YGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSN---ELNELDISNNLLSGHIPHWIGNFSSDLKVLL  406 (790)
Q Consensus       338 ~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~  406 (790)
                      .=        ..........+.+.++|++++-+++ .+|+.+....   -.+..+++.|++. ++|..+..+....+.+.
T Consensus       341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~  418 (565)
T KOG0472|consen  341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLV  418 (565)
T ss_pred             cccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHH
Confidence            00        0011112234567889999998888 4555443333   3889999999998 88988887777333444


Q ss_pred             ccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCccccc
Q 036932          407 MSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGV  486 (790)
Q Consensus       407 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~  486 (790)
                      +++| ..+.+|..++.+++|..|++++|.+...+.+.+.+..|+.|+++.|+|. .+|..+.....++.+-.++|++...
T Consensus       419 lsnn-~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v  496 (565)
T KOG0472|consen  419 LSNN-KISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV  496 (565)
T ss_pred             hhcC-ccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence            5544 4568999999999999999999998876666668888999999999998 8899999989999999999999987


Q ss_pred             CchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChh
Q 036932          487 IPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSC  538 (790)
Q Consensus       487 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~  538 (790)
                      .|..+.++.+|..|||.+|.+. .+|..++++++|+.|++.+|+|.  .|..
T Consensus       497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence            7777999999999999999998 88999999999999999999998  5543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-38  Score=322.22  Aligned_cols=384  Identities=23%  Similarity=0.250  Sum_probs=258.1

Q ss_pred             cEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcc
Q 036932          232 EALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPK  311 (790)
Q Consensus       232 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  311 (790)
                      +.|++++|.+..+....+.++++|+++++.+|.++ .+|.... ...+|+.|+|.+|.|+..-...+..++.|+.|||+.
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            34555555555443333445555555555555555 4554332 233455555555555544444455555555555555


Q ss_pred             cccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCC
Q 036932          312 NNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI  391 (790)
Q Consensus       312 n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  391 (790)
                      |.++ ++|...|..-.++++|+|++|.|+......|..+.+|.+|.|+.|+++...+..|..+++               
T Consensus       159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~---------------  222 (873)
T KOG4194|consen  159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK---------------  222 (873)
T ss_pred             chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch---------------
Confidence            5554 444444433344555555555554444444444444444444444444444444444444               


Q ss_pred             chhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCC
Q 036932          392 PHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS  470 (790)
Q Consensus       392 p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~  470 (790)
                                |+.|++..|++.-.--..|.++++|+.|.+..|.++......| .+.++++|+|..|+++..-..++.++
T Consensus       223 ----------L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  223 ----------LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             ----------hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence                      5555555554443334456677788888888888888777777 88888999999998887777788888


Q ss_pred             CCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccc
Q 036932          471 SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNV  550 (790)
Q Consensus       471 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~  550 (790)
                      +.|+.|++|+|.|...-++.++-+++|++|+|++|+++...+..|..++.|++|+|++|+++ .+...            
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~------------  359 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEG------------  359 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhh------------
Confidence            99999999999988888888888889999999999998888888888999999999999886 11110            


Q ss_pred             cCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCCh
Q 036932          551 YLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPS  630 (790)
Q Consensus       551 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~  630 (790)
                                                        .|                      ..+++|+.|||++|.+++.|-+
T Consensus       360 ----------------------------------af----------------------~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  360 ----------------------------------AF----------------------VGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             ----------------------------------HH----------------------HHhhhhhhhcCcCCeEEEEEec
Confidence                                              11                      1256888899999998877765


Q ss_pred             hh---hhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCC
Q 036932          631 EI---GDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFA  706 (790)
Q Consensus       631 ~~---~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~  706 (790)
                      .-   ..+. |+.|+|.+|+|......+|.++..||.|||.+|.|-.+-|.+|..| .|+.|-+..-.+-|.+    |+.
T Consensus       384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC----ql~  458 (873)
T KOG4194|consen  384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC----QLK  458 (873)
T ss_pred             chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec----cHH
Confidence            43   3343 8999999999996666899999999999999999999999999999 8999998887777766    455


Q ss_pred             CcCcccccCCc
Q 036932          707 TFDESSYRGNL  717 (790)
Q Consensus       707 ~~~~~~~~gn~  717 (790)
                      ++..+-+..++
T Consensus       459 Wl~qWl~~~~l  469 (873)
T KOG4194|consen  459 WLAQWLYRRKL  469 (873)
T ss_pred             HHHHHHHhccc
Confidence            55554444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-37  Score=317.32  Aligned_cols=364  Identities=25%  Similarity=0.232  Sum_probs=242.1

Q ss_pred             CCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEe
Q 036932          108 HLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLG  187 (790)
Q Consensus       108 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~  187 (790)
                      .-++||+++|++..+.+..|.++++|+.+++..|.++ .+|.  +..                        ...+++.|+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~------------------------~sghl~~L~  131 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGH------------------------ESGHLEKLD  131 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccc------------------------cccceeEEe
Confidence            3456888888888777777888888888888877776 4542  111                        112344555


Q ss_pred             CCCCCCCCcc-hhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCC
Q 036932          188 LPNYNLKVIP-SFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLT  266 (790)
Q Consensus       188 l~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~  266 (790)
                      |.+|.|..+. +.+..++.|+.||||.|.++ .+|..-|..-.++++|+|+.|.++......|..+.+|.+|.|+.|+++
T Consensus       132 L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit  210 (873)
T KOG4194|consen  132 LRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT  210 (873)
T ss_pred             eeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence            5555554433 35666778888888888887 777655555567888888888888777677777778888888888888


Q ss_pred             ccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCccccccc
Q 036932          267 GKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPK  346 (790)
Q Consensus       267 ~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~  346 (790)
                       .+|...|+.+++|+.|+|..|+|.-.---.|.++++|+.|.|..|.+. .+.++.|-++.++++|+|+.|++...-..+
T Consensus       211 -tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~  288 (873)
T KOG4194|consen  211 -TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGW  288 (873)
T ss_pred             -ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhccc
Confidence             888888877888888888888877433556777888888888888777 777777777778888888888777666667


Q ss_pred             ccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCC
Q 036932          347 YMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSL  426 (790)
Q Consensus       347 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  426 (790)
                      +.++++|+.|++++|.|..+-++.+..+++|+.|+|++|+++...+..|..+.. |+.|.+++|.+...-...|..+++|
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~lssL  367 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVGLSSL  367 (873)
T ss_pred             ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH-hhhhcccccchHHHHhhHHHHhhhh
Confidence            777777777777777777777777777777777777777777555556665555 6666666666654444455555555


Q ss_pred             CEEecCCccccCccccc---c-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEec
Q 036932          427 NLLSVSENCLSGPMTSS---F-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLL  502 (790)
Q Consensus       427 ~~L~l~~n~l~~~~~~~---~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  502 (790)
                      +.|||++|.+++.+.+.   | .+++|+.|++.+|++..+...+|.++.+|+.|||.+|.|..+-|.+|..+ .|++|.+
T Consensus       368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence            55555555555444332   1 44555555555555553333445555555555555555554555555544 4444444


Q ss_pred             c
Q 036932          503 R  503 (790)
Q Consensus       503 ~  503 (790)
                      .
T Consensus       447 n  447 (873)
T KOG4194|consen  447 N  447 (873)
T ss_pred             c
Confidence            3

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=8.5e-36  Score=323.14  Aligned_cols=475  Identities=27%  Similarity=0.301  Sum_probs=336.2

Q ss_pred             CceeeeChhhhcCCCCCCEEEcCCCCCCc--cccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccC
Q 036932           22 SNILFFIVVGFANLTNLKILDLSGCGITT--LQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHL   99 (790)
Q Consensus        22 ~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~   99 (790)
                      ++...|+..-+-+ ..+..|++..|.+..  ++...+..+|+.||+++|.+...+  ..++.+.+|+.|.++.|.|. ..
T Consensus         8 ~~l~~ip~~i~~~-~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp--~~it~l~~L~~ln~s~n~i~-~v   83 (1081)
T KOG0618|consen    8 EQLELIPEQILNN-EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFP--IQITLLSHLRQLNLSRNYIR-SV   83 (1081)
T ss_pred             ccCcccchhhccH-HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCC--chhhhHHHHhhcccchhhHh-hC
Confidence            3444444433333 337777777775543  334555556777777777776443  35667777777777777776 45


Q ss_pred             CcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCC
Q 036932          100 PDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLP  179 (790)
Q Consensus       100 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~  179 (790)
                      |.+..++.+|+++.|.+|.+. ..|..+..+.+|++|+++.|.+. .+| ..+..++.++.+..++|..+.....     
T Consensus        84 p~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~~lg~-----  155 (1081)
T KOG0618|consen   84 PSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQRLGQ-----  155 (1081)
T ss_pred             chhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhhhhcc-----
Confidence            566777777777777777776 66777777777777777777775 455 3566666677777776632221111     


Q ss_pred             CccceEEeCCCCCC-CCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEE
Q 036932          180 TFQLKVLGLPNYNL-KVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHL  258 (790)
Q Consensus       180 ~~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  258 (790)
                       ..++.+++..+.+ +.++..+..+..  .|||++|.+. ...   ...+.+|+.+....|++....    ..-++++.|
T Consensus       156 -~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L  224 (1081)
T KOG0618|consen  156 -TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELE----ISGPSLTAL  224 (1081)
T ss_pred             -ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEE----ecCcchhee
Confidence             1266667777766 556666655555  6888888775 222   336778888888888776532    244678888


Q ss_pred             EeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCc
Q 036932          259 DVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNN  338 (790)
Q Consensus       259 ~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~  338 (790)
                      +.++|.+. .+....  ...+|++++++.|+++ .+|.+++.+.+|+.++..+|.+. .+|..++ ..++|+.|.+..|.
T Consensus       225 ~a~~n~l~-~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~ne  298 (1081)
T KOG0618|consen  225 YADHNPLT-TLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNE  298 (1081)
T ss_pred             eeccCcce-eecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhh
Confidence            88888887 322222  2568888888888888 56788888888888888888886 8887765 57788888888888


Q ss_pred             CcccccccccCCCCCcEEEcCCcccccccccccCCCCC-CcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccch
Q 036932          339 FYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNE-LNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIP  417 (790)
Q Consensus       339 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~  417 (790)
                      +. -+|+....+++|++|+|..|++....+..+..... ++.|..+.|++. ..|..=......|+.|.+.+|.++...-
T Consensus       299 l~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~  376 (1081)
T KOG0618|consen  299 LE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCF  376 (1081)
T ss_pred             hh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccch
Confidence            86 35556667888899999998887444434443333 777888888876 4443222222338888999999998888


Q ss_pred             hhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCcc
Q 036932          418 AQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLT  496 (790)
Q Consensus       418 ~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~  496 (790)
                      +.+.++++|+.|+|++|.+...+...+ +++.|+.|+|++|+++ .+|..+..+..|++|...+|++. ..| .+..++.
T Consensus       377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~q  453 (1081)
T KOG0618|consen  377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQ  453 (1081)
T ss_pred             hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCc
Confidence            888889999999999999886666666 8899999999999998 78889999999999999999998 667 7888899


Q ss_pred             ccEEeccCccccccCCccccCCCCCCEEEccCCc
Q 036932          497 LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNR  530 (790)
Q Consensus       497 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~  530 (790)
                      |+.+|++.|+++...-.....-++|++||+++|.
T Consensus       454 L~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  454 LKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            9999999999875432222223889999999997

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-35  Score=320.08  Aligned_cols=441  Identities=29%  Similarity=0.333  Sum_probs=259.0

Q ss_pred             CCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceE
Q 036932          106 LSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKV  185 (790)
Q Consensus       106 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~  185 (790)
                      ..+|+.||+++|++. ..|..+..+.+|+.|+++.|.+. ..| ....++.+                         |++
T Consensus        44 ~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~~-------------------------l~~   95 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVP-SSCSNMRN-------------------------LQY   95 (1081)
T ss_pred             eeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCc-hhhhhhhc-------------------------chh
Confidence            334555555555554 44555555555555555555554 222 12222222                         233


Q ss_pred             EeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCC
Q 036932          186 LGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNL  265 (790)
Q Consensus       186 L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l  265 (790)
                      +.|.+|.+..+|..+..+.+|+.|+++.|.+. .+|..+. .++.++.+..++|....    .++. ..++.+++..|.+
T Consensus        96 lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~----~lg~-~~ik~~~l~~n~l  168 (1081)
T KOG0618|consen   96 LNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQ----RLGQ-TSIKKLDLRLNVL  168 (1081)
T ss_pred             heeccchhhcCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhh----hhcc-ccchhhhhhhhhc
Confidence            33333444555666666667777777777776 6665543 55555666666551110    0001 1144445555544


Q ss_pred             CccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccc
Q 036932          266 TGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFP  345 (790)
Q Consensus       266 ~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~  345 (790)
                      .+.++.++.. ++.  .|++++|.+.   -..+.                         .+.+|+.+....|+++.... 
T Consensus       169 ~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls-------------------------~~~~l~~l~c~rn~ls~l~~-  216 (1081)
T KOG0618|consen  169 GGSFLIDIYN-LTH--QLDLRYNEME---VLDLS-------------------------NLANLEVLHCERNQLSELEI-  216 (1081)
T ss_pred             ccchhcchhh-hhe--eeecccchhh---hhhhh-------------------------hccchhhhhhhhcccceEEe-
Confidence            4444444321 222  3555555443   11223                         33444444444444432211 


Q ss_pred             cccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCC
Q 036932          346 KYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGS  425 (790)
Q Consensus       346 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  425 (790)
                         .-++|+.|+.++|.++...+.  ....+|++++++.|+++ .+|.|++.+.. ++.+...+|+++ .+|..+....+
T Consensus       217 ---~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~n-le~l~~n~N~l~-~lp~ri~~~~~  288 (1081)
T KOG0618|consen  217 ---SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACAN-LEALNANHNRLV-ALPLRISRITS  288 (1081)
T ss_pred             ---cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhccc-ceEecccchhHH-hhHHHHhhhhh
Confidence               224555666666655522221  12345677777777776 55677777766 777777777773 66777777777


Q ss_pred             CCEEecCCccccCcccccccccccceeeccCCcCccccchhhcC-CC-CCcEEeccCCcccccCchhhhcCccccEEecc
Q 036932          426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFR-SS-NLITLDLRDNRFSGVIPHQISESLTLRFLLLR  503 (790)
Q Consensus       426 L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  503 (790)
                      |+.|.+.+|.+.-..+..-..+.|++|+|..|++. ..|+.+.. .. .|+.++.+.|++....-..=...+.|+.|.+.
T Consensus       289 L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla  367 (1081)
T KOG0618|consen  289 LVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA  367 (1081)
T ss_pred             HHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence            77777777777755544446777788888888776 45554432 22 36777777777764321112345678888888


Q ss_pred             CccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCC
Q 036932          504 GNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGN  583 (790)
Q Consensus       504 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  583 (790)
                      +|.+++..-..+.+.++|++|+|++|++. .+|+...                                           
T Consensus       368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~-------------------------------------------  403 (1081)
T KOG0618|consen  368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKL-------------------------------------------  403 (1081)
T ss_pred             cCcccccchhhhccccceeeeeecccccc-cCCHHHH-------------------------------------------
Confidence            88888777677777888888888888876 6665321                                           


Q ss_pred             CcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCC
Q 036932          584 GVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIE  662 (790)
Q Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~  662 (790)
                                               ..+..|+.|+||+|+|+ .+|.++..+. |++|...+|++. ..| ++..+++|+
T Consensus       404 -------------------------~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~  455 (1081)
T KOG0618|consen  404 -------------------------RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLK  455 (1081)
T ss_pred             -------------------------hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcce
Confidence                                     12456778888888887 7888887776 888888888887 566 778888888


Q ss_pred             EEEccCCcccccCCccccCCCCCCeEecccCc
Q 036932          663 SLDLSHNRLSGQVPPRLTELNFLSNFNVSFNN  694 (790)
Q Consensus       663 ~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~  694 (790)
                      .+|+|.|+|+-..-..-..-+.|++|||++|.
T Consensus       456 ~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  456 VLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             EEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            88888888874433222233778888888886

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=7e-34  Score=294.22  Aligned_cols=360  Identities=24%  Similarity=0.373  Sum_probs=269.5

Q ss_pred             CCCCEEEeecCCCC-ccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcE
Q 036932          253 DFLHHLDVSNNNLT-GKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGL  331 (790)
Q Consensus       253 ~~L~~L~Ls~n~l~-~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~  331 (790)
                      +-.+-.|+++|.++ +.+|..+-. ++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+ +.++.|+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHH
Confidence            44556677777776 567777754 778888888877777 77888888888888888888876 454443 56777888


Q ss_pred             EEccCCcCcc-cccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchh-hhhccCCCeEEEccC
Q 036932          332 LDLSGNNFYG-QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHW-IGNFSSDLKVLLMSK  409 (790)
Q Consensus       332 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~~~L~~L~l~~  409 (790)
                      +.+..|++.. -+|..+..+..|+.|||++|+++ ..|..+...+++-.|+||+|+|. .||.. +.++.. |-.|++++
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtD-LLfLDLS~  159 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTD-LLFLDLSN  159 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHh-Hhhhcccc
Confidence            8888887753 35666677888888888888887 67777777788888888888887 55544 445555 88888888


Q ss_pred             ccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCc-cccchhhcCCCCCcEEeccCCcccccC
Q 036932          410 MFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLS-GPIPIALFRSSNLITLDLRDNRFSGVI  487 (790)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~-~~~p~~~~~~~~L~~L~L~~N~l~~~~  487 (790)
                      |++. .+|+.+..+..|++|+|++|.+....-... .+++|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. ..
T Consensus       160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence            8876 567777778888888888887764333333 5677888888887654 347888888888888888888887 77


Q ss_pred             chhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccc
Q 036932          488 PHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGS  567 (790)
Q Consensus       488 p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (790)
                      |+++..+++|+.|+|++|+|+ .+........+|++|++|.|+++ .+|.++..+                         
T Consensus       238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL-------------------------  290 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL-------------------------  290 (1255)
T ss_pred             hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh-------------------------
Confidence            888888888888888888887 44445566778888888888887 788877653                         


Q ss_pred             ccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCccc-ccCChhhhhce-ecceeccCC
Q 036932          568 IGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLT-GGIPSEIGDLQ-IRGLNLSYN  645 (790)
Q Consensus       568 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-g~ip~~~~~l~-L~~L~Ls~N  645 (790)
                                                                  +.|+.|++.+|+++ ..||..||.+. |+++..++|
T Consensus       291 --------------------------------------------~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN  326 (1255)
T KOG0444|consen  291 --------------------------------------------TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN  326 (1255)
T ss_pred             --------------------------------------------HHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence                                                        35666667777765 45777888776 888888888


Q ss_pred             ccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCc
Q 036932          646 FLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNN  694 (790)
Q Consensus       646 ~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~  694 (790)
                      .+. ..|+.+..+..|+.|.|++|+|. ..|.++.-|+-|+.||+..|+
T Consensus       327 ~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  327 KLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             ccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            877 77888888888888888888876 677777778888888888875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.6e-33  Score=288.22  Aligned_cols=365  Identities=26%  Similarity=0.371  Sum_probs=282.4

Q ss_pred             CCCCCCEEecCCCcCc-ccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCc
Q 036932           81 ELKNLSEFILRGINIK-GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLE  159 (790)
Q Consensus        81 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~  159 (790)
                      -++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++....  ..+..++.|+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LR   81 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH--GELSDLPRLR   81 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh--hhhccchhhH
Confidence            4566677888888888 457888889999999999999998 78999999999999999999886322  3455555555


Q ss_pred             EEEccCCCCCcccccCCCCCCccceEEeCCCCCC--CCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEecc
Q 036932          160 VLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNL--KVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLT  237 (790)
Q Consensus       160 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~  237 (790)
                      .+++..                         |++  ..+|..++.+..|+.||||+|++. ++|..+- .-++       
T Consensus        82 sv~~R~-------------------------N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn-------  127 (1255)
T KOG0444|consen   82 SVIVRD-------------------------NNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKN-------  127 (1255)
T ss_pred             HHhhhc-------------------------cccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcC-------
Confidence            555544                         444  457777888888888888888887 7776542 2233       


Q ss_pred             CCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccc
Q 036932          238 NNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGE  317 (790)
Q Consensus       238 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  317 (790)
                                       +-+|+||+|+|. .||..+|.+++.|-.||||+|++. .+|+.+..+..|++|+|++|.+. .
T Consensus       128 -----------------~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-h  187 (1255)
T KOG0444|consen  128 -----------------SIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-H  187 (1255)
T ss_pred             -----------------cEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-H
Confidence                             345666666666 788888888888888899988888 77888888888899999888775 3


Q ss_pred             cChhhhhcCCcCcEEEccCCcCc-ccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhh
Q 036932          318 LPAPLLTGCISLGLLDLSGNNFY-GQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIG  396 (790)
Q Consensus       318 i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  396 (790)
                      ..-.-...+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|++. .+|+.+..+++|+.|+||+|+|+ .+....+
T Consensus       188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~  265 (1255)
T KOG0444|consen  188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG  265 (1255)
T ss_pred             HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH
Confidence            22222234567778888776543 346777888888999999999887 78888888899999999999888 5555555


Q ss_pred             hccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccC-cccccc-cccccceeeccCCcCccccchhhcCCCCCc
Q 036932          397 NFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSG-PMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLI  474 (790)
Q Consensus       397 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~  474 (790)
                      .... ++.|+++.|+++ .+|.+++.++.|+.|.+.+|.++- -+|+.+ ++.+|+.+...+|.+. .+|+.++.|..|+
T Consensus       266 ~W~~-lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~  342 (1255)
T KOG0444|consen  266 EWEN-LETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ  342 (1255)
T ss_pred             HHhh-hhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence            5566 888899998887 788888888889988888888763 234444 8888888888888887 7888899999999


Q ss_pred             EEeccCCcccccCchhhhcCccccEEeccCcccc
Q 036932          475 TLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLE  508 (790)
Q Consensus       475 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  508 (790)
                      .|.|+.|++- .+|+++.-++.|+.||++.|.--
T Consensus       343 kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  343 KLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             Hhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            9999999887 67888888888999999888644

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.94  E-value=4e-28  Score=239.98  Aligned_cols=426  Identities=22%  Similarity=0.236  Sum_probs=286.5

Q ss_pred             cccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcc-cccccccCh
Q 036932          242 TGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPK-NNFSGELPA  320 (790)
Q Consensus       242 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~i~~  320 (790)
                      .|...+|..-.+...+++|..|.|+ .+|...|..+++|++|||++|.|+.+.|++|.++++|.+|-+.+ |+|+ .+|.
T Consensus        56 ~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k  133 (498)
T KOG4237|consen   56 KGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPK  133 (498)
T ss_pred             CCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhh
Confidence            3333455556667889999999999 99999999999999999999999999999999999998887776 8898 9999


Q ss_pred             hhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcC-----------
Q 036932          321 PLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSG-----------  389 (790)
Q Consensus       321 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------  389 (790)
                      ..|.++.+|+.|.+.-|++.....+.|..++++..|.+.+|.+..+--..|..+.+++.+.+..|.+..           
T Consensus       134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~  213 (498)
T KOG4237|consen  134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL  213 (498)
T ss_pred             hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence            999999999999999999999989999999999999999999985544588999999999999998431           


Q ss_pred             -CCchhhhhccCCCeEEEccCccccccchhhhccC-CCCCEEecCCccccCccc-ccc-cccccceeeccCCcCccccch
Q 036932          390 -HIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSVSENCLSGPMT-SSF-NLSSLEHLYLQMNSLSGPIPI  465 (790)
Q Consensus       390 -~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~~~-~l~~L~~L~L~~n~l~~~~p~  465 (790)
                       ..|..++.... ..-..+.+.++...-+..+... ..+..--.+.+...+.-| .+| .+++|++|+|++|+++++-+.
T Consensus       214 a~~~ietsgarc-~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~  292 (498)
T KOG4237|consen  214 AMNPIETSGARC-VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG  292 (498)
T ss_pred             hhchhhccccee-cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence             11111111111 1111222333322222222211 111111112222333333 355 899999999999999998899


Q ss_pred             hhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHh
Q 036932          466 ALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLW  545 (790)
Q Consensus       466 ~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~  545 (790)
                      +|.....+++|.|..|++...-...|.++..|+.|+|.+|+|+..-|..|..+..|.+|+|-.|++....-  +..+..|
T Consensus       293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~--l~wl~~W  370 (498)
T KOG4237|consen  293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR--LAWLGEW  370 (498)
T ss_pred             hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc--hHHHHHH
Confidence            99999999999999999997777889999999999999999999999999999999999999999874332  2222233


Q ss_pred             hcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccc-eEEECCCCcc
Q 036932          546 VAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYM-VGLDLSCNQL  624 (790)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l  624 (790)
                      +.+......+..+-..  |+..+   ..+...+....-+    .+  ++.........    ...++-+ +....|++.+
T Consensus       371 lr~~~~~~~~~Cq~p~--~~~~~---~~~dv~~~~~~c~----~~--ee~~~~~s~~c----P~~c~c~~tVvRcSnk~l  435 (498)
T KOG4237|consen  371 LRKKSVVGNPRCQSPG--FVRQI---PISDVAFGDFRCG----GP--EELGCLTSSPC----PPPCTCLDTVVRCSNKLL  435 (498)
T ss_pred             HhhCCCCCCCCCCCCc--hhccc---cchhccccccccC----Cc--cccCCCCCCCC----CCCcchhhhhHhhcccch
Confidence            3333222222222111  00000   0111111000000    00  00000000000    0011112 2234555555


Q ss_pred             cccCChhhhhceecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccC
Q 036932          625 TGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFN  693 (790)
Q Consensus       625 ~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N  693 (790)
                      . .+|+.+. ...+.|++.+|.++ .+|.+  .+.+| .+|+|+|+|+..--..|.+|+.|.+|-+|||
T Consensus       436 k-~lp~~iP-~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  436 K-LLPRGIP-VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             h-hcCCCCC-chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            4 4443321 11556788888888 77776  66777 8888888888877788888888888888887

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=8.9e-26  Score=223.42  Aligned_cols=394  Identities=20%  Similarity=0.230  Sum_probs=276.7

Q ss_pred             EEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccC
Q 036932          257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSG  336 (790)
Q Consensus       257 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~  336 (790)
                      ..+-++-.++ ++|..+   .+.-..++|..|.|+...|.+|+.+++|+.|||++|+|+ .|.++.|.++.+|..|-+.+
T Consensus        50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence            4566666777 888876   467889999999999888889999999999999999998 88888899999988877776


Q ss_pred             -CcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCch-hhhhccCCCeEEEccCcccc-
Q 036932          337 -NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPH-WIGNFSSDLKVLLMSKMFLK-  413 (790)
Q Consensus       337 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~~L~~L~l~~n~l~-  413 (790)
                       |+|+...-..|.++.+++.|.+.-|++.....+.|+.++++..|.+.+|.+. .++. .+..+.. ++.+.+..|.+. 
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~-i~tlhlA~np~ic  202 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAA-IKTLHLAQNPFIC  202 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhc-cchHhhhcCcccc
Confidence             8998887788999999999999999999888889999999999999999998 4444 6666666 888888777632 


Q ss_pred             -----------ccchhhhccCCCCCEEecCCccccCcccccc--cccccceeeccCCcCccccc-hhhcCCCCCcEEecc
Q 036932          414 -----------GNIPAQLLNHGSLNLLSVSENCLSGPMTSSF--NLSSLEHLYLQMNSLSGPIP-IALFRSSNLITLDLR  479 (790)
Q Consensus       414 -----------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~L~~n~l~~~~p-~~~~~~~~L~~L~L~  479 (790)
                                 ...|..++......-..+.++.+....+..|  ....+..-..+.+...++.| ..|..+++|+.|+|+
T Consensus       203 dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls  282 (498)
T KOG4237|consen  203 DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS  282 (498)
T ss_pred             ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence                       1233334444444455555666655555555  22233333334444544555 468899999999999


Q ss_pred             CCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHH----hhcccccCCCc
Q 036932          480 DNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLL----WVAGNVYLHEP  555 (790)
Q Consensus       480 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~----~~~~~~~~~~~  555 (790)
                      +|+++++-+.||.+..++++|.|..|++...-...|.++..|+.|+|++|+|+..-|..+..+..    ....+.+....
T Consensus       283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  283 NNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             CCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence            99999999999999999999999999998777888999999999999999999777766544332    12223333332


Q ss_pred             ccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCccc---ccCChhh
Q 036932          556 YLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLT---GGIPSEI  632 (790)
Q Consensus       556 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---g~ip~~~  632 (790)
                      .+.            |...|..-...     .+.|+                .+....++.++++.+.+.   -.-|++.
T Consensus       363 ~l~------------wl~~Wlr~~~~-----~~~~~----------------Cq~p~~~~~~~~~dv~~~~~~c~~~ee~  409 (498)
T KOG4237|consen  363 RLA------------WLGEWLRKKSV-----VGNPR----------------CQSPGFVRQIPISDVAFGDFRCGGPEEL  409 (498)
T ss_pred             chH------------HHHHHHhhCCC-----CCCCC----------------CCCCchhccccchhccccccccCCcccc
Confidence            221            21111110000     00000                011234555555555432   1233333


Q ss_pred             hhce----------e-cceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCccee
Q 036932          633 GDLQ----------I-RGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSG  697 (790)
Q Consensus       633 ~~l~----------L-~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g  697 (790)
                      +-..          + ++..-|++.++ .+|..+.  ..-.+|++.+|+++ .+|.+  .+.+| .+|+|+|+++-
T Consensus       410 ~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~  478 (498)
T KOG4237|consen  410 GCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS  478 (498)
T ss_pred             CCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence            2221          3 33445555555 5665443  45678999999998 77777  66788 89999999873

>PLN03210 Resistant to P

Probab=99.89  E-value=3.1e-22  Score=244.31  Aligned_cols=339  Identities=22%  Similarity=0.251  Sum_probs=193.8

Q ss_pred             ChhHHhhcccccEecccCCc------cccccchhhhccc-ccccccCcccccccccChhhhhcCCcCcEEEccCCcCccc
Q 036932          270 PEDMGIILQKLLYIDMSDNR------FEGYLPSSIGEMK-ALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQ  342 (790)
Q Consensus       270 p~~~~~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~  342 (790)
                      ....|..+.+|+.|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..+  ...+|+.|++.+|.+. .
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence            33444556666666664432      2223455555443 4666666666665 666543  3566666666666654 3


Q ss_pred             ccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhcc
Q 036932          343 IFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLN  422 (790)
Q Consensus       343 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  422 (790)
                      ++..+..+++|+.++++++...+.+|. +..+++|+.|++++|.....+|..+..+.. |+.|++++|...+.+|..+ +
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~-L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNK-LEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCC-CCEEeCCCCCCcCccCCcC-C
Confidence            444555666666666666543334443 555666677777666655566666666666 6667766665555555544 5


Q ss_pred             CCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCccc-------ccCchhhhcCc
Q 036932          423 HGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFS-------GVIPHQISESL  495 (790)
Q Consensus       423 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~-------~~~p~~~~~l~  495 (790)
                      +++|+.|++++|...+.+|..  ..+|+.|++++|.++ .+|..+ .+++|+.|++.++...       ...+......+
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            666777777666544444432  345666777777665 455443 4566666666653321       11112223345


Q ss_pred             cccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccccccccccc
Q 036932          496 TLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNST  575 (790)
Q Consensus       496 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  575 (790)
                      +|+.|++++|...+.+|..++++++|+.|++++|+..+.+|..+                                    
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------  822 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------  822 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence            67777777776666667777777777777777665444444321                                    


Q ss_pred             ccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhceecceeccCCccccccCccc
Q 036932          576 FHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSF  655 (790)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~l  655 (790)
                                                        .+++|+.|++++|.....+|....  .|+.|+|++|.++ .+|..+
T Consensus       823 ----------------------------------~L~sL~~L~Ls~c~~L~~~p~~~~--nL~~L~Ls~n~i~-~iP~si  865 (1153)
T PLN03210        823 ----------------------------------NLESLESLDLSGCSRLRTFPDIST--NISDLNLSRTGIE-EVPWWI  865 (1153)
T ss_pred             ----------------------------------CccccCEEECCCCCcccccccccc--ccCEeECCCCCCc-cChHHH
Confidence                                              134566666666544334443221  1566666666666 466666


Q ss_pred             cCCCCCCEEEccC-CcccccCCccccCCCCCCeEecccC
Q 036932          656 SNLKWIESLDLSH-NRLSGQVPPRLTELNFLSNFNVSFN  693 (790)
Q Consensus       656 ~~l~~L~~LdLs~-N~lsg~ip~~l~~l~~L~~L~ls~N  693 (790)
                      +.+++|+.|+|++ |+|. .+|..+..++.|+.++++++
T Consensus       866 ~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        866 EKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             hcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence            6666666666665 4444 35555666666666666655

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=8.3e-22  Score=240.54  Aligned_cols=307  Identities=22%  Similarity=0.251  Sum_probs=190.3

Q ss_pred             ccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEE
Q 036932          278 QKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLY  357 (790)
Q Consensus       278 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  357 (790)
                      .+|+.|.+.++.+. .+|..+ ...+|+.|++.+|++. .++... ..+++|+.++++++.....+| .+..+++|++|+
T Consensus       589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~  663 (1153)
T PLN03210        589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLK  663 (1153)
T ss_pred             cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEE
Confidence            34555555555554 444444 3445555555555554 444332 345555555555544333333 244555566666


Q ss_pred             cCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCcccc
Q 036932          358 LENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLS  437 (790)
Q Consensus       358 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  437 (790)
                      +++|.....+|..+..+++|+.|++++|.....+|..+ ++.+ |+.|++++|...+.+|..   .++|+.|++++|.+.
T Consensus       664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s-L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS-LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE  738 (1153)
T ss_pred             ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC-CCEEeCCCCCCccccccc---cCCcCeeecCCCccc
Confidence            65554444555555555666666666554333455443 3344 666666665544444432   245667777777665


Q ss_pred             CcccccccccccceeeccCCcC-------ccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCcccccc
Q 036932          438 GPMTSSFNLSSLEHLYLQMNSL-------SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQ  510 (790)
Q Consensus       438 ~~~~~~~~l~~L~~L~L~~n~l-------~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  510 (790)
                      . +|..+.+++|++|.+.++..       ....+......++|+.|++++|...+.+|.+++++++|+.|++++|...+.
T Consensus       739 ~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~  817 (1153)
T PLN03210        739 E-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET  817 (1153)
T ss_pred             c-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence            3 34444566677776665332       111222333456888889988887778888888888999999988865557


Q ss_pred             CCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccC
Q 036932          511 IPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFP  590 (790)
Q Consensus       511 ~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  590 (790)
                      +|..+ .+++|+.|++++|.....+|.                                                     
T Consensus       818 LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----------------------------------------------------  843 (1153)
T PLN03210        818 LPTGI-NLESLESLDLSGCSRLRTFPD-----------------------------------------------------  843 (1153)
T ss_pred             eCCCC-CccccCEEECCCCCccccccc-----------------------------------------------------
Confidence            77665 688899999988764433332                                                     


Q ss_pred             cceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccC-CccccccCccccCCCCCCEEEccC
Q 036932          591 QLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSY-NFLSGSIPGSFSNLKWIESLDLSH  668 (790)
Q Consensus       591 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~  668 (790)
                                         ..++++.|+|++|.++ .+|..++.+. |+.|+|++ |+++ .+|..+..+++|+.|++++
T Consensus       844 -------------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~  902 (1153)
T PLN03210        844 -------------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSD  902 (1153)
T ss_pred             -------------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCC
Confidence                               1246788889999887 7888888887 88999988 5566 5777888888999999887


Q ss_pred             Cc
Q 036932          669 NR  670 (790)
Q Consensus       669 N~  670 (790)
                      +.
T Consensus       903 C~  904 (1153)
T PLN03210        903 CG  904 (1153)
T ss_pred             Cc
Confidence            73

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.5e-21  Score=220.57  Aligned_cols=192  Identities=27%  Similarity=0.308  Sum_probs=91.4

Q ss_pred             ccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEccc
Q 036932          305 IFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISN  384 (790)
Q Consensus       305 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  384 (790)
                      ..|+++.+.++ .+|..+.   ++|+.|++.+|+++. +|.   ..++|++|++++|+++. +|..   .++|+.|++++
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS  271 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence            34455555554 4554332   245555555555543 221   13455555555555552 2321   24555555555


Q ss_pred             ccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccc
Q 036932          385 NLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIP  464 (790)
Q Consensus       385 n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p  464 (790)
                      |.+. .+|...    ..|+.|++++|+++. +|..   .++|+.|++++|.+++... .  ..+|+.|++++|++++ +|
T Consensus       272 N~L~-~Lp~lp----~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~Lp~-l--p~~L~~L~Ls~N~L~~-LP  338 (788)
T PRK15387        272 NPLT-HLPALP----SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA-L--PSELCKLWAYNNQLTS-LP  338 (788)
T ss_pred             Cchh-hhhhch----hhcCEEECcCCcccc-cccc---ccccceeECCCCccccCCC-C--cccccccccccCcccc-cc
Confidence            5554 233211    125555555555542 2321   2346666666666554321 1  2345556666666652 44


Q ss_pred             hhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCc
Q 036932          465 IALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       465 ~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  532 (790)
                      ..   ..+|+.|+|++|+|++ +|..   ..+|+.|++++|+++. +|..   ..+|+.|++++|+++
T Consensus       339 ~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt  395 (788)
T PRK15387        339 TL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT  395 (788)
T ss_pred             cc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence            21   1356666666666653 3321   2345555666666552 3432   234566666666655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=1.7e-21  Score=220.10  Aligned_cols=264  Identities=23%  Similarity=0.263  Sum_probs=202.7

Q ss_pred             CcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEE
Q 036932          327 ISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLL  406 (790)
Q Consensus       327 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~  406 (790)
                      ..-..|+++.+.++ .+|..+.  ++|+.|++.+|+++. +|.   .+++|++|++++|+++ .+|..    +..|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence            45678999999998 4666654  489999999999984 554   2588999999999998 45643    23499999


Q ss_pred             ccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCccccc
Q 036932          407 MSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGV  486 (790)
Q Consensus       407 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~  486 (790)
                      +++|.++ .+|...   .+|+.|++++|.++....   ..++|+.|++++|++++ +|..   ...|+.|++++|++++ 
T Consensus       269 Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        269 IFSNPLT-HLPALP---SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-  336 (788)
T ss_pred             ccCCchh-hhhhch---hhcCEEECcCCccccccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence            9999887 344432   468889999999886433   24689999999999984 4542   2468888999999984 


Q ss_pred             CchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccc
Q 036932          487 IPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVG  566 (790)
Q Consensus       487 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (790)
                      +|..   ..+|+.|++++|++++ +|..   .++|+.|++++|+++ .+|..                            
T Consensus       337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l----------------------------  380 (788)
T PRK15387        337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----------------------------  380 (788)
T ss_pred             cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc----------------------------
Confidence            5542   2478999999999984 5543   357788899999887 35531                            


Q ss_pred             cccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhceecceeccCCc
Q 036932          567 SIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNF  646 (790)
Q Consensus       567 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~L~~L~Ls~N~  646 (790)
                                                                  ...|+.|++++|+|+ .+|....  .|+.|++|+|+
T Consensus       381 --------------------------------------------~~~L~~LdLs~N~Lt-~LP~l~s--~L~~LdLS~N~  413 (788)
T PRK15387        381 --------------------------------------------PSGLKELIVSGNRLT-SLPVLPS--ELKELMVSGNR  413 (788)
T ss_pred             --------------------------------------------ccccceEEecCCccc-CCCCccc--CCCEEEccCCc
Confidence                                                        235788999999998 4775432  28899999999


Q ss_pred             cccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCC
Q 036932          647 LSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK  702 (790)
Q Consensus       647 l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  702 (790)
                      |++ +|...   .+|+.|||++|+|+ .+|..+..++.|+.|+|++|+|+|.+|+.
T Consensus       414 Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        414 LTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             CCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            994 77643   46788999999998 78999999999999999999999988753

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=2.7e-19  Score=203.90  Aligned_cols=223  Identities=24%  Similarity=0.322  Sum_probs=124.4

Q ss_pred             CCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeecc
Q 036932          376 ELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQ  455 (790)
Q Consensus       376 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~  455 (790)
                      +|+.|++++|+++ .+|..+.   ..|+.|++++|.+. .+|..+.  ++|+.|++++|.++.. |..+ .++|+.|+++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l-~~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCL-PENL-PEELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCcc-cccc-CCCCcEEECC
Confidence            4444444444444 3333222   12445555555444 3343332  2456666666655532 2222 2356666666


Q ss_pred             CCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccC
Q 036932          456 MNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSI  535 (790)
Q Consensus       456 ~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~  535 (790)
                      +|+++ .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+
T Consensus       292 ~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~L  361 (754)
T PRK15370        292 DNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VL  361 (754)
T ss_pred             CCccc-cCcccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cC
Confidence            66666 3444332  356677777777763 343332  467777777777764 555443  57777888887776 45


Q ss_pred             ChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccce
Q 036932          536 PSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMV  615 (790)
Q Consensus       536 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  615 (790)
                      |..+                                                                       .+.|+
T Consensus       362 P~~l-----------------------------------------------------------------------p~~L~  370 (754)
T PRK15370        362 PETL-----------------------------------------------------------------------PPTIT  370 (754)
T ss_pred             Chhh-----------------------------------------------------------------------cCCcC
Confidence            5321                                                                       13577


Q ss_pred             EEECCCCcccccCChhhhhceecceeccCCccccccCcc----ccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 036932          616 GLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGS----FSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVS  691 (790)
Q Consensus       616 ~L~Ls~N~l~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~----l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls  691 (790)
                      .|++++|+|+ .+|..+.. .|+.|++++|+|+ .+|..    ++.++.+..|++.+|.++.   .   .+..|+.+ ++
T Consensus       371 ~LdLs~N~Lt-~LP~~l~~-sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~---tl~~L~~L-l~  440 (754)
T PRK15370        371 TLDVSRNALT-NLPENLPA-ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---R---TIQNMQRL-MS  440 (754)
T ss_pred             EEECCCCcCC-CCCHhHHH-HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---H---HHHHHHHh-hh
Confidence            7788888877 56665532 3777888888877 44543    3445777888888888763   2   23333344 44


Q ss_pred             cCcceec
Q 036932          692 FNNLSGL  698 (790)
Q Consensus       692 ~N~l~g~  698 (790)
                      .+.+.|+
T Consensus       441 s~~~~gp  447 (754)
T PRK15370        441 SVGYQGP  447 (754)
T ss_pred             cccccCC
Confidence            4555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=5.1e-19  Score=201.69  Aligned_cols=229  Identities=24%  Similarity=0.362  Sum_probs=109.9

Q ss_pred             CCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEc
Q 036932          255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDL  334 (790)
Q Consensus       255 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L  334 (790)
                      ...|+++++.++ .+|..+   .+.|+.|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+.   .+|+.|++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L  248 (754)
T PRK15370        180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL  248 (754)
T ss_pred             ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence            344555555554 444433   234555555555555 3333332  34555555555554 4443321   24455555


Q ss_pred             cCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccc
Q 036932          335 SGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG  414 (790)
Q Consensus       335 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~  414 (790)
                      ++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.                  
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp------------------  303 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP------------------  303 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch------------------
Confidence            555544 2232221  24455555555544 2333221  34555555555544 2232111                  


Q ss_pred             cchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcC
Q 036932          415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISES  494 (790)
Q Consensus       415 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l  494 (790)
                               ++|+.|++++|.++......  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  
T Consensus       304 ---------~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--  366 (754)
T PRK15370        304 ---------SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--  366 (754)
T ss_pred             ---------hhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--
Confidence                     13444445555444322111  2355666666666653 454442  46666666666665 3454442  


Q ss_pred             ccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHH
Q 036932          495 LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLT  540 (790)
Q Consensus       495 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~  540 (790)
                      ++|+.|++++|+++ .+|..+.  ..|+.|++++|+++ .+|..+.
T Consensus       367 ~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~  408 (754)
T PRK15370        367 PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLP  408 (754)
T ss_pred             CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHH
Confidence            46666666666666 3444332  35666777777776 5565443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=2e-19  Score=191.15  Aligned_cols=281  Identities=25%  Similarity=0.277  Sum_probs=166.3

Q ss_pred             EEEccCCcCcc-cccccccCCCCCcEEEcCCcccccc----cccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEE
Q 036932          331 LLDLSGNNFYG-QIFPKYMNLTQLEFLYLENNKFSGK----IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVL  405 (790)
Q Consensus       331 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L  405 (790)
                      .|+|..+.+++ .....+..++.|+.++++++.++..    ++..+...+.+++++++++.+.+ .+..+          
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~----------   70 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL----------   70 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence            46667777662 3333445566677888877776432    34445556667777777766542 11111          


Q ss_pred             EccCccccccchhhhccCCCCCEEecCCccccCcccccc-ccc---ccceeeccCCcCcc----ccchhhcCC-CCCcEE
Q 036932          406 LMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLS---SLEHLYLQMNSLSG----PIPIALFRS-SNLITL  476 (790)
Q Consensus       406 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~---~L~~L~L~~n~l~~----~~p~~~~~~-~~L~~L  476 (790)
                              ..++..+..+++|+.|++++|.+.+..+..+ .+.   +|++|++++|++++    .+...+..+ ++|+.|
T Consensus        71 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L  142 (319)
T cd00116          71 --------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL  142 (319)
T ss_pred             --------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence                    1233444555666666666666654443333 233   37777777776652    223344555 677777


Q ss_pred             eccCCccccc----CchhhhcCccccEEeccCcccccc----CCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcc
Q 036932          477 DLRDNRFSGV----IPHQISESLTLRFLLLRGNYLEGQ----IPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAG  548 (790)
Q Consensus       477 ~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~  548 (790)
                      ++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++.-+..+....     
T Consensus       143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~-----  217 (319)
T cd00116         143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL-----  217 (319)
T ss_pred             EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh-----
Confidence            7777777632    233455566777777777777642    233445556788888888877633222222110     


Q ss_pred             cccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccC
Q 036932          549 NVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGI  628 (790)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~i  628 (790)
                                                                                  ..++.|+.|++++|.+++..
T Consensus       218 ------------------------------------------------------------~~~~~L~~L~ls~n~l~~~~  237 (319)
T cd00116         218 ------------------------------------------------------------ASLKSLEVLNLGDNNLTDAG  237 (319)
T ss_pred             ------------------------------------------------------------cccCCCCEEecCCCcCchHH
Confidence                                                                        12457778888888777543


Q ss_pred             Chhhhhc------eecceeccCCccc----cccCccccCCCCCCEEEccCCccccc----CCccccCC-CCCCeEecccC
Q 036932          629 PSEIGDL------QIRGLNLSYNFLS----GSIPGSFSNLKWIESLDLSHNRLSGQ----VPPRLTEL-NFLSNFNVSFN  693 (790)
Q Consensus       629 p~~~~~l------~L~~L~Ls~N~l~----g~ip~~l~~l~~L~~LdLs~N~lsg~----ip~~l~~l-~~L~~L~ls~N  693 (790)
                      +..+...      .|+.|++++|.++    +.+++.+..+++|+.+|+++|.++..    ....+... +.|+++++.+|
T Consensus       238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            3333221      2778888888776    23445566678888888888888854    44444444 67788888777


Q ss_pred             cc
Q 036932          694 NL  695 (790)
Q Consensus       694 ~l  695 (790)
                      ++
T Consensus       318 ~~  319 (319)
T cd00116         318 SF  319 (319)
T ss_pred             CC
Confidence            64

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=1.7e-18  Score=184.14  Aligned_cols=271  Identities=25%  Similarity=0.248  Sum_probs=112.1

Q ss_pred             EEeecCCCCccCChhHHhhcccccEecccCCccccc----cchhhhcccccccccCcccccccccCh------hhhhcCC
Q 036932          258 LDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGY----LPSSIGEMKALIFLRLPKNNFSGELPA------PLLTGCI  327 (790)
Q Consensus       258 L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~i~~------~~~~~l~  327 (790)
                      |+|..+.+++.-....+..+..|++|+++++.+++.    ++..+...+++++++++++.+.+ .+.      ..+..++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcC
Confidence            344444443222223333344555555555555321    23333344445555555554431 111      1123344


Q ss_pred             cCcEEEccCCcCcccccccccCCCC---CcEEEcCCccccc----ccccccCCC-CCCcEEEcccccCcCCC----chhh
Q 036932          328 SLGLLDLSGNNFYGQIFPKYMNLTQ---LEFLYLENNKFSG----KIEEGLSNS-NELNELDISNNLLSGHI----PHWI  395 (790)
Q Consensus       328 ~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~Ls~n~l~~~~----p~~~  395 (790)
                      +|+.|++++|.+.+..+..+..+..   |++|++++|+++.    .+...+..+ ++|+.|++++|.+++..    +..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            5555555555554333333322222   5555555555441    111223333 45555555555554211    1122


Q ss_pred             hhccCCCeEEEccCcccccc----chhhhccCCCCCEEecCCccccCcccc----cc-cccccceeeccCCcCccccchh
Q 036932          396 GNFSSDLKVLLMSKMFLKGN----IPAQLLNHGSLNLLSVSENCLSGPMTS----SF-NLSSLEHLYLQMNSLSGPIPIA  466 (790)
Q Consensus       396 ~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~-~l~~L~~L~L~~n~l~~~~p~~  466 (790)
                      ..+.. |+.|++++|.+++.    ++..+..+++|+.|++++|.+++....    .+ .+++|++|++++|.+++.....
T Consensus       162 ~~~~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         162 RANRD-LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HhCCC-cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            22223 44444444444421    222233334555555555554432211    11 3444555555555544321111


Q ss_pred             hc-----CCCCCcEEeccCCcccc----cCchhhhcCccccEEeccCcccccc----CCccccCC-CCCCEEEccCCc
Q 036932          467 LF-----RSSNLITLDLRDNRFSG----VIPHQISESLTLRFLLLRGNYLEGQ----IPNQLCQL-RRLGVLDLSHNR  530 (790)
Q Consensus       467 ~~-----~~~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~l-~~L~~L~Ls~N~  530 (790)
                      +.     ..+.|+.|++++|.++.    .+...+..+++|+.+++++|.++..    ....+... +.|+.+|+.+|+
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            11     12455555555555541    1222333344555555555555432    22223333 455555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=4.5e-19  Score=156.09  Aligned_cols=187  Identities=28%  Similarity=0.450  Sum_probs=159.3

Q ss_pred             ccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCC
Q 036932          440 MTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLR  519 (790)
Q Consensus       440 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~  519 (790)
                      ++..|+++..+.|.|++|+++ .+|..+..+.+|++|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p  102 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP  102 (264)
T ss_pred             cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence            445567888999999999999 78889999999999999999998 78899999999999999999998 8899999999


Q ss_pred             CCCEEEccCCcCcc-cCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEe
Q 036932          520 RLGVLDLSHNRISG-SIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFM  598 (790)
Q Consensus       520 ~L~~L~Ls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (790)
                      .|++|||.+|+++. .+|..+..                                                         
T Consensus       103 ~levldltynnl~e~~lpgnff~---------------------------------------------------------  125 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFY---------------------------------------------------------  125 (264)
T ss_pred             hhhhhhccccccccccCCcchhH---------------------------------------------------------
Confidence            99999999999873 34443322                                                         


Q ss_pred             eccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCc
Q 036932          599 TKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPP  677 (790)
Q Consensus       599 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~  677 (790)
                                  ++.|+.|+|+.|.|. .+|..++.++ |+.|.+..|.+- ..|.+++.+++|+.|.+.+|+++ .+|.
T Consensus       126 ------------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlpp  190 (264)
T KOG0617|consen  126 ------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPP  190 (264)
T ss_pred             ------------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecCh
Confidence                        346778899999998 8999999998 999999999988 78999999999999999999998 7888


Q ss_pred             cccCCCCC---CeEecccCcceecCCC
Q 036932          678 RLTELNFL---SNFNVSFNNLSGLIPD  701 (790)
Q Consensus       678 ~l~~l~~L---~~L~ls~N~l~g~iP~  701 (790)
                      +++.+.-+   +.+.+.+|++.-+|.+
T Consensus       191 el~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  191 ELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             hhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            88876533   4566778887766543

>PLN03150 hypothetical protein; Provisional

Probab=99.62  E-value=8.3e-16  Score=175.27  Aligned_cols=117  Identities=34%  Similarity=0.579  Sum_probs=104.9

Q ss_pred             cceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 036932          613 YMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVS  691 (790)
Q Consensus       613 ~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls  691 (790)
                      .++.|+|++|.++|.+|..++.+. |+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++.+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            478999999999999999999998 9999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcceecCCCC--CcCCCcCcccccCCcCCCCCCCCCCCC
Q 036932          692 FNNLSGLIPDK--GQFATFDESSYRGNLHLCGPTINKSCN  729 (790)
Q Consensus       692 ~N~l~g~iP~~--~~~~~~~~~~~~gn~~lcg~~~~~~c~  729 (790)
                      +|+++|.+|..  ..+.......+.||+++||.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999976  222233455688999999987656674

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=1.2e-16  Score=140.89  Aligned_cols=174  Identities=26%  Similarity=0.435  Sum_probs=102.0

Q ss_pred             CCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEec
Q 036932          352 QLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSV  431 (790)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  431 (790)
                      .++.|.+++|+++ .+|..++.+.+|+.|.+++|+++ .+|..+..+++ |+.|++.-|++. ..|..|+.++.|+.||+
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~k-lr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPK-LRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchh-hhheecchhhhh-cCccccCCCchhhhhhc
Confidence            3344444444444 33333444444444444444444 34444444444 444444444443 44555555666666666


Q ss_pred             CCccccC-cccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccc
Q 036932          432 SENCLSG-PMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEG  509 (790)
Q Consensus       432 ~~n~l~~-~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  509 (790)
                      .+|++.. ..|..| .+..|+.|+|+.|.+. .+|..++.+++|+.|.+.+|.+- .+|..++.+..|++|++.+|+++ 
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-  186 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-  186 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-
Confidence            6666653 344444 7777788888888776 67777788888888888888776 56777777777888888888777 


Q ss_pred             cCCccccCCC---CCCEEEccCCcCc
Q 036932          510 QIPNQLCQLR---RLGVLDLSHNRIS  532 (790)
Q Consensus       510 ~~~~~l~~l~---~L~~L~Ls~N~l~  532 (790)
                      .+|..++++.   +=+++.+.+|+.-
T Consensus       187 vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  187 VLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence            5555555432   2233445555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.37  E-value=3.1e-14  Score=148.43  Aligned_cols=191  Identities=28%  Similarity=0.438  Sum_probs=104.6

Q ss_pred             CCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCc
Q 036932          426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN  505 (790)
Q Consensus       426 L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  505 (790)
                      -...|++.|.+.......-.+..|+.+.|..|.+. .+|..+..+..|+.+||+.|+++ ..|..++.++ |+.|.+++|
T Consensus        77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            34455555555533322224455555555555555 45555555555555566655555 4444454443 555555555


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCc
Q 036932          506 YLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGV  585 (790)
Q Consensus       506 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  585 (790)
                      +++ .+|..++.+..|..||.+.|.+. .+|..++.                                            
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~--------------------------------------------  187 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY--------------------------------------------  187 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh--------------------------------------------
Confidence            555 45555555555555555555554 44443332                                            


Q ss_pred             ccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhceecceeccCCccccccCccccCCCCCCEEE
Q 036932          586 YSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLD  665 (790)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~l~~l~~L~~Ld  665 (790)
                                               +.+|+.|.+..|++. ..|++++.|.|..||+|+|+++ .||-.|.+|+.|++|-
T Consensus       188 -------------------------l~slr~l~vrRn~l~-~lp~El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  188 -------------------------LTSLRDLNVRRNHLE-DLPEELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQ  240 (722)
T ss_pred             -------------------------HHHHHHHHHhhhhhh-hCCHHHhCCceeeeecccCcee-ecchhhhhhhhheeee
Confidence                                     334555666666665 5666666666666666666666 6666666666666666


Q ss_pred             ccCCcccccCCccccC---CCCCCeEecccC
Q 036932          666 LSHNRLSGQVPPRLTE---LNFLSNFNVSFN  693 (790)
Q Consensus       666 Ls~N~lsg~ip~~l~~---l~~L~~L~ls~N  693 (790)
                      |.+|-|. ..|..+..   ..-.++|+..-.
T Consensus       241 LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  241 LENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            6666665 34443322   223344544444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=2.3e-13  Score=142.01  Aligned_cols=132  Identities=27%  Similarity=0.349  Sum_probs=82.9

Q ss_pred             CeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCC
Q 036932          402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN  481 (790)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N  481 (790)
                      -...+++.|++. .+|..++.+..|+.+.++.|.+........++..|++++|+.|+++ .+|..++.++ |+.|-+++|
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            344566666665 5666666666666666666666543333336666666677766666 5566665553 666666776


Q ss_pred             cccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhH
Q 036932          482 RFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCL  539 (790)
Q Consensus       482 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~  539 (790)
                      +++ .+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El  208 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEEL  208 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHH
Confidence            666 55666666666666677666666 56666666666666666666665 555444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.27  E-value=6.3e-12  Score=137.51  Aligned_cols=198  Identities=34%  Similarity=0.470  Sum_probs=123.7

Q ss_pred             EEecCCccccCcccccccccccceeeccCCcCccccchhhcCCC-CCcEEeccCCcccccCchhhhcCccccEEeccCcc
Q 036932          428 LLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSS-NLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNY  506 (790)
Q Consensus       428 ~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  506 (790)
                      .+++..|.+...+......+.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+..++.|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            455555555444443334456666777777666 4555555553 6777777777776 444566777777777777777


Q ss_pred             ccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcc
Q 036932          507 LEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVY  586 (790)
Q Consensus       507 l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  586 (790)
                      +. .+|...+.+++|+.|++++|+++ .+|.....                                             
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~---------------------------------------------  207 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL---------------------------------------------  207 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh---------------------------------------------
Confidence            76 44444446677777777777776 55543211                                             


Q ss_pred             cccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEE
Q 036932          587 SIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLD  665 (790)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~Ld  665 (790)
                                              ...|+.+++++|+.. .++..+..+. +..+.+++|++. .+|..++.++.++.||
T Consensus       208 ------------------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~  261 (394)
T COG4886         208 ------------------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLD  261 (394)
T ss_pred             ------------------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceec
Confidence                                    224666667776433 4555555555 666667777766 3366677777777777


Q ss_pred             ccCCcccccCCccccCCCCCCeEecccCcceecCCCC
Q 036932          666 LSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK  702 (790)
Q Consensus       666 Ls~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  702 (790)
                      +++|+++.. +. ++.+..++.|++++|.++...|..
T Consensus       262 ~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         262 LSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence            777777733 33 777777777777777777666543

>PLN03150 hypothetical protein; Provisional

Probab=99.23  E-value=1.3e-11  Score=141.11  Aligned_cols=91  Identities=35%  Similarity=0.546  Sum_probs=83.6

Q ss_pred             cccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCC-CCCCeE
Q 036932          611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEL-NFLSNF  688 (790)
Q Consensus       611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l-~~L~~L  688 (790)
                      ++.|+.|+|++|.++|.+|..++.+. |+.|||++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ ..+..+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            56899999999999999999999998 9999999999999999999999999999999999999999998874 467889


Q ss_pred             ecccCcceecCCC
Q 036932          689 NVSFNNLSGLIPD  701 (790)
Q Consensus       689 ~ls~N~l~g~iP~  701 (790)
                      ++++|+..|.+|.
T Consensus       521 ~~~~N~~lc~~p~  533 (623)
T PLN03150        521 NFTDNAGLCGIPG  533 (623)
T ss_pred             EecCCccccCCCC
Confidence            9999987766653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=6.2e-11  Score=129.70  Aligned_cols=182  Identities=35%  Similarity=0.443  Sum_probs=138.6

Q ss_pred             CCCCEEecCCccccCccccccccc-ccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEec
Q 036932          424 GSLNLLSVSENCLSGPMTSSFNLS-SLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLL  502 (790)
Q Consensus       424 ~~L~~L~l~~n~l~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  502 (790)
                      +.++.|++.+|.++...+...... +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|......+.|+.|++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            567778888888776665555553 8888999999887 66677888899999999999998 55665557888999999


Q ss_pred             cCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccC
Q 036932          503 RGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYG  582 (790)
Q Consensus       503 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  582 (790)
                      ++|++. .+|.....+..|+++++++|++. .++..+.                                          
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~------------------------------------------  229 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS------------------------------------------  229 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh------------------------------------------
Confidence            999998 66666556677999999999633 2332221                                          


Q ss_pred             CCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCC
Q 036932          583 NGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWI  661 (790)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L  661 (790)
                                                 .+..+..+.+++|++. .++..++.+. ++.|++++|.++ .++. ++.+.++
T Consensus       230 ---------------------------~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l  279 (394)
T COG4886         230 ---------------------------NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNL  279 (394)
T ss_pred             ---------------------------hcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCcc
Confidence                                       2445666778888887 4467777777 999999999999 4444 8999999


Q ss_pred             CEEEccCCcccccCCccccC
Q 036932          662 ESLDLSHNRLSGQVPPRLTE  681 (790)
Q Consensus       662 ~~LdLs~N~lsg~ip~~l~~  681 (790)
                      +.||+++|.++...|.....
T Consensus       280 ~~L~~s~n~~~~~~~~~~~~  299 (394)
T COG4886         280 RELDLSGNSLSNALPLIALL  299 (394)
T ss_pred             CEEeccCccccccchhhhcc
Confidence            99999999999877766544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=4.4e-11  Score=111.61  Aligned_cols=130  Identities=31%  Similarity=0.350  Sum_probs=48.7

Q ss_pred             hhcCCCCCCEEEcCCCCCCccccCc-CCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCccc-CCCCC
Q 036932           31 GFANLTNLKILDLSGCGITTLQGLT-KLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCL-KNLSH  108 (790)
Q Consensus        31 ~~~~l~~L~~L~Ls~n~i~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~  108 (790)
                      .+.+..++++|+|.+|.|+.++.++ .+.+|+.|+|++|.|+...   .+..+++|++|++++|.|+.. .+.+ ..+++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~---~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~   89 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE---GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN   89 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T---T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             ccccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc---CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence            4556667888888888888888777 5788888888888887543   477788888888888888743 3334 35788


Q ss_pred             CcEEEccCCCCCCCC-hhhhcCCCCCCEEeCcCCcCcccc--chhhhhCCCCCcEEEcc
Q 036932          109 LKVLDISYNQLSGTL-PSAITTLTSLEYLALLDNNFEGTF--LLNSLANHSKLEVLLLS  164 (790)
Q Consensus       109 L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~l~~L~~L~L~  164 (790)
                      |++|++++|+|...- -..+..+++|++|++.+|.++..-  ....+..+++|+.||-.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            888888888886432 145677888888888888776321  12356778888888754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=8.1e-11  Score=109.83  Aligned_cols=121  Identities=27%  Similarity=0.284  Sum_probs=40.1

Q ss_pred             cCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccC-CCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCC
Q 036932           43 LSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVC-ELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG  121 (790)
Q Consensus        43 Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~  121 (790)
                      +..+.|...+.+.+...+++|+|.+|.|..+.   .+. .+.+|+.|++++|.|...  +.+..+++|++|++++|+|+.
T Consensus         4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie---~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen    4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIE---NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             -----------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S
T ss_pred             cccccccccccccccccccccccccccccccc---chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc
Confidence            44556666677888889999999999998542   344 578999999999999854  358889999999999999996


Q ss_pred             CChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCC
Q 036932          122 TLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTN  168 (790)
Q Consensus       122 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~  168 (790)
                      +.+.....+++|++|++++|++...-....++.+++|+.|++.+|+.
T Consensus        79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            54433357899999999999987544334566777777777777653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=7.9e-11  Score=119.82  Aligned_cols=208  Identities=21%  Similarity=0.213  Sum_probs=128.1

Q ss_pred             CCccceEEeCCCCCCCCcc--hhhhCCCCCCEEEccCCCCCCcCc-hhHhhCCCCCcEEeccCCcccccccCC-CCCCCC
Q 036932          179 PTFQLKVLGLPNYNLKVIP--SFLLHQYDLKLLDLSGNNLVGDFP-TWVLRNNTKLEALFLTNNSFTGNLQLP-KTKHDF  254 (790)
Q Consensus       179 ~~~~L~~L~l~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~~ip-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~  254 (790)
                      ++.+|+++.+.++.....+  .....|++++.|||+.|-+..-.+ ..+.+.+++|+.|+++.|.+....... ...++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3456777777777776555  366778888899999887763222 234557888888888888876432222 225677


Q ss_pred             CCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccCh-hhhhcCCcCcEEE
Q 036932          255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPA-PLLTGCISLGLLD  333 (790)
Q Consensus       255 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~  333 (790)
                      |+.|.++.|.++-.--.++...+|+|+.|++..|.....-......+..|+.|||++|++. ..+. .....++.|..|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhh
Confidence            8888888888862222233345788888888888533333444445677888888888776 3331 2234567777777


Q ss_pred             ccCCcCccccccc------ccCCCCCcEEEcCCcccccccc--cccCCCCCCcEEEcccccCc
Q 036932          334 LSGNNFYGQIFPK------YMNLTQLEFLYLENNKFSGKIE--EGLSNSNELNELDISNNLLS  388 (790)
Q Consensus       334 L~~n~l~~~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~  388 (790)
                      ++.+.+...-...      ...+++|++|++..|++. .++  ..+..+++|+.|.+..|.++
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence            7777776442221      134566777777776664 121  12334455555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.05  E-value=3.7e-11  Score=118.99  Aligned_cols=114  Identities=23%  Similarity=0.259  Sum_probs=61.0

Q ss_pred             hhccCCCCCEEecCCccccCcccccc-----cccccceeeccCCcCccc----cc---------hhhcCCCCCcEEeccC
Q 036932          419 QLLNHGSLNLLSVSENCLSGPMTSSF-----NLSSLEHLYLQMNSLSGP----IP---------IALFRSSNLITLDLRD  480 (790)
Q Consensus       419 ~~~~~~~L~~L~l~~n~l~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~p---------~~~~~~~~L~~L~L~~  480 (790)
                      ++..++.|+++|||+|-+.-..+..+     .+.+|++|+|.+|.+.-.    +.         .....-+.|+++..++
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            33445555555555555543333222     455566666666655311    00         1122335677777777


Q ss_pred             Cccccc----CchhhhcCccccEEeccCcccccc----CCccccCCCCCCEEEccCCcCc
Q 036932          481 NRFSGV----IPHQISESLTLRFLLLRGNYLEGQ----IPNQLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       481 N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~  532 (790)
                      |++...    +...+...+.|+.+.+..|.|...    +...+..+++|++|||.+|.++
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            776532    223345556677777777766321    2334566777777777777765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=5.2e-11  Score=114.96  Aligned_cols=130  Identities=28%  Similarity=0.306  Sum_probs=92.0

Q ss_pred             ccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccc
Q 036932          495 LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNS  574 (790)
Q Consensus       495 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  574 (790)
                      +.|+++||++|.|+ .+.++..-++.++.|++|+|.|. .+.. +                                   
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-L-----------------------------------  325 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-L-----------------------------------  325 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-h-----------------------------------
Confidence            45777777777777 55666666778888888888776 1110 0                                   


Q ss_pred             cccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCc
Q 036932          575 TFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPG  653 (790)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~  653 (790)
                                                        +.+++|+.||||+|.++ ++-.+-..+- ++.|+|+.|.|...  +
T Consensus       326 ----------------------------------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--S  368 (490)
T KOG1259|consen  326 ----------------------------------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--S  368 (490)
T ss_pred             ----------------------------------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--h
Confidence                                              12567788888888876 3332222332 78888898887632  3


Q ss_pred             cccCCCCCCEEEccCCccccc-CCccccCCCCCCeEecccCcceecC
Q 036932          654 SFSNLKWIESLDLSHNRLSGQ-VPPRLTELNFLSNFNVSFNNLSGLI  699 (790)
Q Consensus       654 ~l~~l~~L~~LdLs~N~lsg~-ip~~l~~l~~L~~L~ls~N~l~g~i  699 (790)
                      .++++-+|..||+++|+|... .-.++++++.|+.+-|.+|++.+.+
T Consensus       369 GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  369 GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            567888999999999999742 2357889999999999999998754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=8.1e-11  Score=116.61  Aligned_cols=196  Identities=25%  Similarity=0.288  Sum_probs=116.1

Q ss_pred             cCCcCcEEEccCCcCcccccccc----cCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccC
Q 036932          325 GCISLGLLDLSGNNFYGQIFPKY----MNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSS  400 (790)
Q Consensus       325 ~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~  400 (790)
                      ++++|++++||+|.+....++.|    ..++.|++|.|.+|.+...--..++  ..|..|.  .++.       .+.-+.
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~--~~kk-------~~~~~~  158 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA--VNKK-------AASKPK  158 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH--HHhc-------cCCCcc
Confidence            55677777777777654444332    3456666666666655421111100  0011111  0110       011112


Q ss_pred             CCeEEEccCcccccc----chhhhccCCCCCEEecCCccccCccc----ccc-cccccceeeccCCcCccc----cchhh
Q 036932          401 DLKVLLMSKMFLKGN----IPAQLLNHGSLNLLSVSENCLSGPMT----SSF-NLSSLEHLYLQMNSLSGP----IPIAL  467 (790)
Q Consensus       401 ~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~-~l~~L~~L~L~~n~l~~~----~p~~~  467 (790)
                       |+++....|++...    +...+..++.|+.+.++.|.+.....    ..+ .+++|+.|||..|-|+..    +...+
T Consensus       159 -Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL  237 (382)
T KOG1909|consen  159 -LRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL  237 (382)
T ss_pred             -eEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence             55555555555422    33445566777777777777753322    122 677888888888877632    34566


Q ss_pred             cCCCCCcEEeccCCcccccCchhh-----hcCccccEEeccCcccccc----CCccccCCCCCCEEEccCCcCc
Q 036932          468 FRSSNLITLDLRDNRFSGVIPHQI-----SESLTLRFLLLRGNYLEGQ----IPNQLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       468 ~~~~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~  532 (790)
                      ..+++|++|++++|.+......++     ...++|++|.+.+|.++..    +...+...+.|..|+|++|.+.
T Consensus       238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            777888899999988876554444     2468899999999988642    2334556788999999999984

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.2e-10  Score=118.64  Aligned_cols=210  Identities=24%  Similarity=0.178  Sum_probs=153.2

Q ss_pred             cCCCCCCEEEcCCCCCCccc---cCcCCCCCCEEeCCCCCCCCCcCc-cccCCCCCCCEEecCCCcCcccCCccc-CCCC
Q 036932           33 ANLTNLKILDLSGCGITTLQ---GLTKLKNLEALDLSYNNISGSSES-QGVCELKNLSEFILRGINIKGHLPDCL-KNLS  107 (790)
Q Consensus        33 ~~l~~L~~L~Ls~n~i~~~~---~l~~l~~L~~L~Ls~n~i~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~  107 (790)
                      +++++|+.+.|.++.+..+.   -...|++++.||||+|-+....+. .....+++|+.|+|+.|.+..-..... ..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            46888999999988888554   477899999999999987744332 235678999999999998763322222 3578


Q ss_pred             CCcEEEccCCCCCCC-ChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEE
Q 036932          108 HLKVLDISYNQLSGT-LPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVL  186 (790)
Q Consensus       108 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L  186 (790)
                      +|+.|.|+.|.++.. +......+|+|+.|+|..|... .+.......++.|+.|||++|+++..-.......++.|..|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            899999999998732 2234567899999999998532 22334456678899999999988766666677788899999


Q ss_pred             eCCCCCCCC--cchh-----hhCCCCCCEEEccCCCCCCcCch-hHhhCCCCCcEEeccCCccccc
Q 036932          187 GLPNYNLKV--IPSF-----LLHQYDLKLLDLSGNNLVGDFPT-WVLRNNTKLEALFLTNNSFTGN  244 (790)
Q Consensus       187 ~l~~n~l~~--lp~~-----l~~l~~L~~L~Ls~n~l~~~ip~-~~~~~l~~L~~L~L~~n~l~~~  244 (790)
                      +++.+.+..  +|+.     ....++|++|+++.|++. ..++ .-...+++|+.|.+..|.++..
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence            999999854  3443     456789999999999885 3332 1122567788888888888754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.87  E-value=7.3e-10  Score=107.13  Aligned_cols=128  Identities=25%  Similarity=0.224  Sum_probs=98.4

Q ss_pred             CeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCC
Q 036932          402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN  481 (790)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N  481 (790)
                      |+.+|+++|.++ .+.+++.-.|.++.|++++|.+..... ...+++|+.|||++|.++ .+..+=..+-+.+.|.|+.|
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhh
Confidence            788888888776 566667777888888999888875443 226788999999999887 45555556678889999999


Q ss_pred             cccccCchhhhcCccccEEeccCccccccC-CccccCCCCCCEEEccCCcCccc
Q 036932          482 RFSGVIPHQISESLTLRFLLLRGNYLEGQI-PNQLCQLRRLGVLDLSHNRISGS  534 (790)
Q Consensus       482 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~g~  534 (790)
                      .+...  ..+..+-+|..||+++|+|...- -..+++++.|+.+.|.+|++.+.
T Consensus       363 ~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  363 KIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            88643  55677788899999999986432 34578899999999999999843

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.83  E-value=3.2e-09  Score=124.04  Aligned_cols=132  Identities=25%  Similarity=0.291  Sum_probs=106.7

Q ss_pred             hcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCC--CCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCC
Q 036932           32 FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNN--ISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHL  109 (790)
Q Consensus        32 ~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  109 (790)
                      ..+....|...+-+|.+..+..-..++.|++|-+.+|.  +. .+....|..++.|+.|||++|.=.+.+|..++++-+|
T Consensus       519 ~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             ccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            34557788888888888866666667789999999986  43 3333458889999999999987777899999999999


Q ss_pred             cEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCC
Q 036932          110 KVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR  166 (790)
Q Consensus       110 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n  166 (790)
                      |+|+++++.+. .+|..+++++.|.+|++..+.-...+ +.....+++|++|.+...
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence            99999999998 88999999999999999888755344 356667899999988754

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=3.5e-09  Score=81.11  Aligned_cols=59  Identities=42%  Similarity=0.555  Sum_probs=49.0

Q ss_pred             ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcc
Q 036932          637 IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNL  695 (790)
Q Consensus       637 L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l  695 (790)
                      |+.|++++|+|+...++.|.++++|+.||+++|+|+...|..|..+++|++|++++|+|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            67788888888866667888888888888888888888888888888888888888875

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.75  E-value=1.9e-09  Score=118.09  Aligned_cols=190  Identities=31%  Similarity=0.334  Sum_probs=112.7

Q ss_pred             cceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCcccc-CcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCC
Q 036932           15 KWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQG-LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI   93 (790)
Q Consensus        15 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   93 (790)
                      +++.+..+.+..+ ...+..+++|+.|++.+|+|..+.. +..+++|++|++++|.|+...   .+..++.|+.|++++|
T Consensus        75 ~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~---~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   75 KELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE---GLSTLTLLKELNLSGN  150 (414)
T ss_pred             Hhhccchhhhhhh-hcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc---chhhccchhhheeccC
Confidence            3444444444442 2346777888888888888887766 777888888888888887553   3666667888888888


Q ss_pred             cCcccCCcccCCCCCCcEEEccCCCCCCCCh-hhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCccc
Q 036932           94 NIKGHLPDCLKNLSHLKVLDISYNQLSGTLP-SAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSV  172 (790)
Q Consensus        94 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~  172 (790)
                      .|...  ..+..++.|+.+++++|++..+-+ . ...+.+++.+++.+|.+...-   .+..+..+..+++..|......
T Consensus       151 ~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~---~~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  151 LISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE---GLDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             cchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc---chHHHHHHHHhhcccccceecc
Confidence            77643  345567788888888888775433 2 467777788888877765221   2233333333344444321111


Q ss_pred             ccCCCCCCc--cceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCC
Q 036932          173 KTENFLPTF--QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLV  217 (790)
Q Consensus       173 ~~~~~~~~~--~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~  217 (790)
                         ......  +|+.+++++|.+..++..+..+..+..|++..|.+.
T Consensus       225 ---~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  225 ---GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             ---CcccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence               111111  255555666655554444444555555555555444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.70  E-value=1.2e-08  Score=78.10  Aligned_cols=60  Identities=35%  Similarity=0.494  Sum_probs=38.8

Q ss_pred             CCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcC
Q 036932          472 NLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRI  531 (790)
Q Consensus       472 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l  531 (790)
                      +|++|++++|+++...+.+|..+++|++|++++|+++...|..|..+++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            566666666666655555666666666666666666666666666666666666666653

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=3.8e-09  Score=115.71  Aligned_cols=248  Identities=26%  Similarity=0.227  Sum_probs=138.7

Q ss_pred             cccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEE
Q 036932          277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFL  356 (790)
Q Consensus       277 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  356 (790)
                      +..++.+.+..|.+.. +-..+..+.+|+.|++..|++. .+... ...+++|++|++++|.|+...  .+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc--chhhccchhhh
Confidence            3444444455554442 2222444555555555555554 33221 234555666666666555432  23344456666


Q ss_pred             EcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932          357 YLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL  436 (790)
Q Consensus       357 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  436 (790)
                      ++.+|.++..  ..+..++.|+.+++++|++...-+.....+.. ++.+.+.+|.+...  ..+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~-l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELIS-LEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccc-hHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence            6666665422  23444566666666666665322200233333 66666666655422  2222233444446677766


Q ss_pred             cCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCcccccc---CC
Q 036932          437 SGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQ---IP  512 (790)
Q Consensus       437 ~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~~  512 (790)
                      +..-+... ....|+.+++++|.+. .++..+..+..+..+++.+|++...  ..+...+.+..+....|.+...   ..
T Consensus       221 ~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (414)
T KOG0531|consen  221 SKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ  297 (414)
T ss_pred             eeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence            64333221 1113788899999887 4446677788899999999988754  3455666777778888876522   22


Q ss_pred             cc-ccCCCCCCEEEccCCcCcccCCh
Q 036932          513 NQ-LCQLRRLGVLDLSHNRISGSIPS  537 (790)
Q Consensus       513 ~~-l~~l~~L~~L~Ls~N~l~g~~p~  537 (790)
                      .. ....+.++...+..|.+....+.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  298 EYITSAAPTLVTLTLELNPIRKISSL  323 (414)
T ss_pred             cccccccccccccccccCcccccccc
Confidence            22 55678889999999998865553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.59  E-value=7.1e-08  Score=112.87  Aligned_cols=273  Identities=23%  Similarity=0.220  Sum_probs=154.2

Q ss_pred             CCCcEEeccCCcccccccCCCCCCCCCCEEEeecCC--CCccCChhHHhhcccccEecccCCccccccchhhhccccccc
Q 036932          229 TKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNN--LTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIF  306 (790)
Q Consensus       229 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  306 (790)
                      ...+...+.+|.+....  ....++.|++|-+..|.  +. .++..+|..++.|+.||+++|.--+.+|..++.+-+|++
T Consensus       523 ~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            45566666666554431  12244567788777775  44 677777777888888888877666678888888888888


Q ss_pred             ccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCccc--ccccccccCCCCCCcEEEccc
Q 036932          307 LRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKF--SGKIEEGLSNSNELNELDISN  384 (790)
Q Consensus       307 L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~  384 (790)
                      |++++..+. .+|..+ .++.+|.+|++..+.-...++.....+++|++|.+..-..  +...-..+..+..|+.+....
T Consensus       600 L~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             ccccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            888888887 777765 5777888888887766555555556678888887765431  112222334455555555433


Q ss_pred             ccCcCCCchhhhh---ccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc------c-ccccceeec
Q 036932          385 NLLSGHIPHWIGN---FSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF------N-LSSLEHLYL  454 (790)
Q Consensus       385 n~l~~~~p~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------~-l~~L~~L~L  454 (790)
                      ....  +-..+..   +....+.+.+..+. ....+..+..+.+|+.|.+.++.+........      . ++++..+..
T Consensus       678 ~s~~--~~e~l~~~~~L~~~~~~l~~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~  754 (889)
T KOG4658|consen  678 SSVL--LLEDLLGMTRLRSLLQSLSIEGCS-KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI  754 (889)
T ss_pred             chhH--hHhhhhhhHHHHHHhHhhhhcccc-cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence            2220  0011111   11101122222211 12344555667777778777777654322211      1 223333333


Q ss_pred             cCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCcccccc
Q 036932          455 QMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQ  510 (790)
Q Consensus       455 ~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  510 (790)
                      .++..- ..+....-.++|+.|.+..++....+......+..+..+.+..+.+.+.
T Consensus       755 ~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  755 LNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             hccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence            333322 1233333456788888887776655555555555566555555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.40  E-value=2.1e-08  Score=86.13  Aligned_cols=85  Identities=24%  Similarity=0.257  Sum_probs=49.7

Q ss_pred             cceEEECCCCcccccCChhhhhce--ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932          613 YMVGLDLSCNQLTGGIPSEIGDLQ--IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV  690 (790)
Q Consensus       613 ~L~~L~Ls~N~l~g~ip~~~~~l~--L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l  690 (790)
                      .|+.++|++|.|. ..|+.+....  ++.|||++|.|+ .+|.+++.++.|+.|+++.|.+. ..|.-+..|.+|.+||.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            4555666666665 4555554432  666666666666 55666666666666666666665 44555555666666666


Q ss_pred             ccCcceecCCC
Q 036932          691 SFNNLSGLIPD  701 (790)
Q Consensus       691 s~N~l~g~iP~  701 (790)
                      -.|... +||.
T Consensus       131 ~~na~~-eid~  140 (177)
T KOG4579|consen  131 PENARA-EIDV  140 (177)
T ss_pred             CCCccc-cCcH
Confidence            555543 4443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=8e-08  Score=93.35  Aligned_cols=179  Identities=21%  Similarity=0.164  Sum_probs=96.0

Q ss_pred             CCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCC-CCccCChhHHhhcccccEe
Q 036932          205 DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNN-LTGKLPEDMGIILQKLLYI  283 (790)
Q Consensus       205 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L  283 (790)
                      .|+.+||+...++..--..+...|.+|+.|.+.++.+.+.+.........|+.|+++.+. ++..--..++..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666655533333445556666666666666665544445556666666666653 3322222344456677777


Q ss_pred             cccCCccccccchh-hhc-ccccccccCcccccc--cccChhhhhcCCcCcEEEccCCc-CcccccccccCCCCCcEEEc
Q 036932          284 DMSDNRFEGYLPSS-IGE-MKALIFLRLPKNNFS--GELPAPLLTGCISLGLLDLSGNN-FYGQIFPKYMNLTQLEFLYL  358 (790)
Q Consensus       284 ~Ls~n~l~~~~p~~-l~~-l~~L~~L~Ls~n~l~--~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L  358 (790)
                      +++-|.+....-.. +.. -++|+.|+++++.-.  ..--+.+...+++|.+|||++|. ++......|..++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            77777654322111 111 235666676665311  01112233567777777777664 33333345566777777777


Q ss_pred             CCcccccccccc---cCCCCCCcEEEcccc
Q 036932          359 ENNKFSGKIEEG---LSNSNELNELDISNN  385 (790)
Q Consensus       359 ~~n~l~~~~~~~---~~~l~~L~~L~Ls~n  385 (790)
                      +.|..  ++|..   +...++|.+||+.++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            77653  34432   345566666666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=8.7e-08  Score=93.12  Aligned_cols=177  Identities=23%  Similarity=0.235  Sum_probs=103.3

Q ss_pred             ccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcc-cccc-cccccCCCCCCcEE
Q 036932          303 ALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNK-FSGK-IEEGLSNSNELNEL  380 (790)
Q Consensus       303 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L  380 (790)
                      .|+++||++..++..--..+.+.|++|+.|.+.++++...+...+..-.+|+.++++.+. ++.. ..--+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            477788877776633333455678888888888888887777777778888888888764 3311 11234667888888


Q ss_pred             EcccccCcCCC-chhhhhccCCCeEEEccCccc---cccchhhhccCCCCCEEecCCccc-cCcccccc-cccccceeec
Q 036932          381 DISNNLLSGHI-PHWIGNFSSDLKVLLMSKMFL---KGNIPAQLLNHGSLNLLSVSENCL-SGPMTSSF-NLSSLEHLYL  454 (790)
Q Consensus       381 ~Ls~n~l~~~~-p~~~~~~~~~L~~L~l~~n~l---~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~-~l~~L~~L~L  454 (790)
                      +++.|.+.... ...+.....+++.|+++++.-   ...+..-...|++|..|||++|.. +......+ +++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            88888765332 222333444477777766532   222333344566777777766543 22111122 5666666666


Q ss_pred             cCCcCccccchhh---cCCCCCcEEeccCC
Q 036932          455 QMNSLSGPIPIAL---FRSSNLITLDLRDN  481 (790)
Q Consensus       455 ~~n~l~~~~p~~~---~~~~~L~~L~L~~N  481 (790)
                      +.|..  .+|..+   ...++|.+||+.++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            66653  334332   33455555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.14  E-value=1.2e-06  Score=84.13  Aligned_cols=240  Identities=19%  Similarity=0.194  Sum_probs=126.3

Q ss_pred             hhcCCCCCCEEEcCCCCCCc------cccCcCCCCCCEEeCCCCCCCCCcC---------ccccCCCCCCCEEecCCCcC
Q 036932           31 GFANLTNLKILDLSGCGITT------LQGLTKLKNLEALDLSYNNISGSSE---------SQGVCELKNLSEFILRGINI   95 (790)
Q Consensus        31 ~~~~l~~L~~L~Ls~n~i~~------~~~l~~l~~L~~L~Ls~n~i~~~~~---------~~~~~~l~~L~~L~L~~n~l   95 (790)
                      .+..+..++.+|||+|.|..      -..+.+-++|+..+++.-......+         ..++.+|++|+..+||+|-+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            34456777888888887761      1235566777777776542211100         11334445555555555544


Q ss_pred             cccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccch-------------hhhhCCCCCcEEE
Q 036932           96 KGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL-------------NSLANHSKLEVLL  162 (790)
Q Consensus        96 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------~~l~~l~~L~~L~  162 (790)
                      ....|+.++                    +.+++-+.|++|.+++|.+- .+.-             ...++-+.|++++
T Consensus       105 g~~~~e~L~--------------------d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vi  163 (388)
T COG5238         105 GSEFPEELG--------------------DLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVI  163 (388)
T ss_pred             CcccchHHH--------------------HHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence            433322110                    12333444555555444431 1110             1123345666666


Q ss_pred             ccCCCCCcccc---cCCCCCCccceEEeCCCCCCCC--cc----hhhhCCCCCCEEEccCCCCCCcCchhH---hhCCCC
Q 036932          163 LSSRTNMLSVK---TENFLPTFQLKVLGLPNYNLKV--IP----SFLLHQYDLKLLDLSGNNLVGDFPTWV---LRNNTK  230 (790)
Q Consensus       163 L~~n~~~~~~~---~~~~~~~~~L~~L~l~~n~l~~--lp----~~l~~l~~L~~L~Ls~n~l~~~ip~~~---~~~l~~  230 (790)
                      ...|.+.....   ...+.....|+.+.+..|.|..  +.    ..++.+.+|+.|||..|.++-.....+   ....+.
T Consensus       164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            66665422111   1122233477888888888731  21    234567899999999998874333222   234566


Q ss_pred             CcEEeccCCcccccccCC------CCCCCCCCEEEeecCCCCccCChhH------HhhcccccEecccCCccc
Q 036932          231 LEALFLTNNSFTGNLQLP------KTKHDFLHHLDVSNNNLTGKLPEDM------GIILQKLLYIDMSDNRFE  291 (790)
Q Consensus       231 L~~L~L~~n~l~~~~~~~------~~~~~~L~~L~Ls~n~l~~~~p~~~------~~~l~~L~~L~Ls~n~l~  291 (790)
                      |+.|.+.+|.++......      ....++|..|...+|...+.+-..+      ...++-|..|.+.+|++.
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            899999999877532221      1256788888888887764433221      123344445555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.13  E-value=1e-07  Score=103.25  Aligned_cols=128  Identities=27%  Similarity=0.291  Sum_probs=93.7

Q ss_pred             CCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEE
Q 036932          253 DFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLL  332 (790)
Q Consensus       253 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L  332 (790)
                      ..|.+.+.++|.+. .+...+ ..++.++.|+|++|+++...  .+..+++|++|||++|.+. .+|..--.+|. |+.|
T Consensus       164 n~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L  237 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLL  237 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heee
Confidence            34677788888886 555555 34788999999999887433  7788889999999999887 77754333444 8899


Q ss_pred             EccCCcCcccccccccCCCCCcEEEcCCccccccc-ccccCCCCCCcEEEcccccCc
Q 036932          333 DLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKI-EEGLSNSNELNELDISNNLLS  388 (790)
Q Consensus       333 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~  388 (790)
                      .+.+|.++..  ..+.++.+|+.||+++|-+.+.- -..++.+..|+.|.|.+|++-
T Consensus       238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9999888642  35678888899999988776421 123455677888888888774

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.12  E-value=1.2e-07  Score=102.60  Aligned_cols=196  Identities=23%  Similarity=0.208  Sum_probs=129.7

Q ss_pred             CCCCCEEEeecCCCCccC-ChhHHhhcccccEecccCCccccccchhhhcc-cccccccCcccccc----------cccC
Q 036932          252 HDFLHHLDVSNNNLTGKL-PEDMGIILQKLLYIDMSDNRFEGYLPSSIGEM-KALIFLRLPKNNFS----------GELP  319 (790)
Q Consensus       252 ~~~L~~L~Ls~n~l~~~~-p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~----------~~i~  319 (790)
                      +++++.+.+-.-.-.+.. |-.++. +.+|++|.+.+|.+..  ...+..+ .+|++|-..+ .+.          |.+.
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifp-F~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~  158 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFP-FRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDIS  158 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceecc-ccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccc
Confidence            445555555443322222 555654 7899999999998863  1222221 1233332211 111          1221


Q ss_pred             hhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhcc
Q 036932          320 APLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFS  399 (790)
Q Consensus       320 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~  399 (790)
                      ...  .--.|.+.+.++|.+. ....++.-++.++.|+|++|+++..  +.+..++.|++|||++|.+. .+|..-..-.
T Consensus       159 ns~--~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc  232 (1096)
T KOG1859|consen  159 NSP--VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC  232 (1096)
T ss_pred             cch--hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh
Confidence            111  1125778888899886 3445667788999999999999743  37888999999999999998 5554322223


Q ss_pred             CCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc--cccccceeeccCCcCc
Q 036932          400 SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF--NLSSLEHLYLQMNSLS  460 (790)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~L~~n~l~  460 (790)
                      + |+.|.+++|.++.  -..+.++.+|+-||+++|-+.+.-.-.+  .+..|+.|+|.+|.+-
T Consensus       233 ~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  233 K-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             h-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            3 9999999998863  3457788899999999999987544333  7889999999999874

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.06  E-value=9.5e-07  Score=76.11  Aligned_cols=131  Identities=23%  Similarity=0.346  Sum_probs=82.8

Q ss_pred             ceEEeCCCCCCCCcchhhhC---CCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEE
Q 036932          183 LKVLGLPNYNLKVIPSFLLH---QYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLD  259 (790)
Q Consensus       183 L~~L~l~~n~l~~lp~~l~~---l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  259 (790)
                      +..+++++|.+..+++....   ...|+..+|++|.+. .+|..+..                        .++.++.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~------------------------kf~t~t~lN   83 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTI------------------------KFPTATTLN   83 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhh------------------------ccchhhhhh
Confidence            34455566666555554333   334555566666665 55544332                        344566777


Q ss_pred             eecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcC
Q 036932          260 VSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNF  339 (790)
Q Consensus       260 Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  339 (790)
                      +++|.++ .+|..+ ..++.|+.|+++.|.+. ..|..+..+.++..|+..+|... ++|-+.+. -+..-..++..+.+
T Consensus        84 l~~neis-dvPeE~-Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~-s~~~al~~lgnepl  158 (177)
T KOG4579|consen   84 LANNEIS-DVPEEL-AAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFY-SSLPALIKLGNEPL  158 (177)
T ss_pred             cchhhhh-hchHHH-hhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhc-cccHHHHHhcCCcc
Confidence            7777777 788885 45889999999999888 67777878888888998888887 77776542 12222233455555


Q ss_pred             cccc
Q 036932          340 YGQI  343 (790)
Q Consensus       340 ~~~~  343 (790)
                      .+..
T Consensus       159 ~~~~  162 (177)
T KOG4579|consen  159 GDET  162 (177)
T ss_pred             cccC
Confidence            4433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.03  E-value=1.2e-06  Score=84.19  Aligned_cols=25  Identities=24%  Similarity=0.138  Sum_probs=15.4

Q ss_pred             hCCCCCCEEEccCCCCCCcCchhHh
Q 036932          201 LHQYDLKLLDLSGNNLVGDFPTWVL  225 (790)
Q Consensus       201 ~~l~~L~~L~Ls~n~l~~~ip~~~~  225 (790)
                      ..+..++.++||+|.+...-..|+.
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~   51 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELC   51 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHH
Confidence            3355677777777777655445543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=1e-06  Score=85.85  Aligned_cols=85  Identities=27%  Similarity=0.310  Sum_probs=43.1

Q ss_pred             CCCCCEEecCCCcCcc--cCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCc
Q 036932           82 LKNLSEFILRGINIKG--HLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLE  159 (790)
Q Consensus        82 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~  159 (790)
                      .++++++||.+|.|+.  .+...+.++|.|++|+|+.|++...+...-..+.+|++|-|.+..+.-......+..+++++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3455555555555542  22223455666666666666665332211123456666666555544333333455566666


Q ss_pred             EEEccCC
Q 036932          160 VLLLSSR  166 (790)
Q Consensus       160 ~L~L~~n  166 (790)
                      .|+++.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            6666655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=1.1e-05  Score=56.46  Aligned_cols=36  Identities=42%  Similarity=0.673  Sum_probs=17.6

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCeEecccCcce
Q 036932          660 WIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLS  696 (790)
Q Consensus       660 ~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~  696 (790)
                      +|++|++++|+|+ .+|..++.|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 33444555555555555555544

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=8.7e-06  Score=79.52  Aligned_cols=64  Identities=17%  Similarity=0.122  Sum_probs=27.9

Q ss_pred             cccccEecccCCccccc-cchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCc
Q 036932          277 LQKLLYIDMSDNRFEGY-LPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFY  340 (790)
Q Consensus       277 l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  340 (790)
                      ++++..+.+..|.+... ..+....++.+.-|+|+.+++...-.-+...++++|..|.++++.+.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            34555555555544321 11222334444455555555542222223344555555555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=1.3e-05  Score=56.00  Aligned_cols=36  Identities=39%  Similarity=0.609  Sum_probs=29.6

Q ss_pred             ecceeccCCccccccCccccCCCCCCEEEccCCcccc
Q 036932          637 IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSG  673 (790)
Q Consensus       637 L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg  673 (790)
                      |++|++++|+|+ .+|..+++|++|+.||+++|+|+.
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            678888999988 567779999999999999999984

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.77  E-value=7.1e-06  Score=93.86  Aligned_cols=159  Identities=24%  Similarity=0.300  Sum_probs=83.8

Q ss_pred             CCCCEEeCCCCCCCCCcCcc-ccCCCCCCCEEecCCCcCccc-CCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCE
Q 036932           58 KNLEALDLSYNNISGSSESQ-GVCELKNLSEFILRGINIKGH-LPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEY  135 (790)
Q Consensus        58 ~~L~~L~Ls~n~i~~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  135 (790)
                      .+|++||+++...-...+.. .-..+|.|+.|.+++-.+... ......++++|..||+|+++++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            45666666665443221111 123456666666666555321 122334566667777776666633  45666666666


Q ss_pred             EeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCC
Q 036932          136 LALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNN  215 (790)
Q Consensus       136 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~  215 (790)
                      |.+.+-.+........+.++++|++||+|.........         .         +...-+.-..+|.|+.||.|++.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~---------i---------i~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK---------I---------IEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH---------H---------HHHHHHhcccCccccEEecCCcc
Confidence            66666555543333455566666666666543211100         0         00000111236778888888887


Q ss_pred             CCCcCchhHhhCCCCCcEEec
Q 036932          216 LVGDFPTWVLRNNTKLEALFL  236 (790)
Q Consensus       216 l~~~ip~~~~~~l~~L~~L~L  236 (790)
                      +.+.+-+.+...-++|+.+..
T Consensus       262 i~~~~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  262 INEEILEELLNSHPNLQQIAA  282 (699)
T ss_pred             hhHHHHHHHHHhCccHhhhhh
Confidence            776666555555555554443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.67  E-value=0.00011  Score=66.02  Aligned_cols=126  Identities=19%  Similarity=0.296  Sum_probs=68.0

Q ss_pred             eeChhhhcCCCCCCEEEcCCCCCCccc--cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCccc
Q 036932           26 FFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCL  103 (790)
Q Consensus        26 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  103 (790)
                      .+...+|.++++|+.+.+.. .+..+.  +|..+++|+.+++..+ +... ...+|..+++|+.+.+.+ .+.......|
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccc-ceeeeecccccccccccc-cccccccccc
Confidence            56778899999999999885 455443  5888888999998875 5533 345678887888888876 4444455677


Q ss_pred             CCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCc
Q 036932          104 KNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLE  159 (790)
Q Consensus       104 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~  159 (790)
                      .++++|+.+++..+ +..+....|.++ +|+.+.+.. .+. .++...|.++++|+
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK  129 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred             cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence            88888888888765 554445567776 888887765 332 34555666666553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.60  E-value=0.00011  Score=68.26  Aligned_cols=103  Identities=29%  Similarity=0.404  Sum_probs=45.4

Q ss_pred             CEEEcCCCCCCccccCcC-CCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCC
Q 036932           39 KILDLSGCGITTLQGLTK-LKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYN  117 (790)
Q Consensus        39 ~~L~Ls~n~i~~~~~l~~-l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  117 (790)
                      +.++|.+.++..+..++. ..+...+||++|.+...   ..|..+++|.+|.|++|+|+.+-|.--.-+++|+.|.|.+|
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            344444444443332221 23344555555554422   13444455555555555555433333333445555555555


Q ss_pred             CCCCCC-hhhhcCCCCCCEEeCcCCcCc
Q 036932          118 QLSGTL-PSAITTLTSLEYLALLDNNFE  144 (790)
Q Consensus       118 ~i~~~~-~~~~~~l~~L~~L~Ls~n~l~  144 (790)
                      +|.... -.-+..|++|++|.+-+|..+
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchh
Confidence            554211 012344555555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.00023  Score=75.11  Aligned_cols=74  Identities=14%  Similarity=0.250  Sum_probs=48.4

Q ss_pred             cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCc-cccccCCccccCCCCCCE
Q 036932          445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN-YLEGQIPNQLCQLRRLGV  523 (790)
Q Consensus       445 ~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~  523 (790)
                      .+.+++.|++++|.++ .+| .  -..+|+.|.+++|.--..+|..+.  ++|+.|++++| .+. .+|      +.|+.
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------cccce
Confidence            4678888888888877 556 2  234688888887544345665442  47888888887 443 344      34667


Q ss_pred             EEccCCcC
Q 036932          524 LDLSHNRI  531 (790)
Q Consensus       524 L~Ls~N~l  531 (790)
                      |+++.|..
T Consensus       117 L~L~~n~~  124 (426)
T PRK15386        117 LEIKGSAT  124 (426)
T ss_pred             EEeCCCCC
Confidence            77766654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.57  E-value=0.00013  Score=67.62  Aligned_cols=108  Identities=25%  Similarity=0.225  Sum_probs=75.6

Q ss_pred             CCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCE
Q 036932           56 KLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEY  135 (790)
Q Consensus        56 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  135 (790)
                      +...=+.++|.+.++..+..  -=..+.+...+||++|++...  +.|..+++|.+|.|.+|+|+.+.|.--.-+++|+.
T Consensus        17 ~~~~e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~   92 (233)
T KOG1644|consen   17 NSVRERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKT   92 (233)
T ss_pred             hhccccccccccccccchhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccce
Confidence            33335677777777753221  111234677899999988743  46888999999999999999887876667788999


Q ss_pred             EeCcCCcCccccchhhhhCCCCCcEEEccCCC
Q 036932          136 LALLDNNFEGTFLLNSLANHSKLEVLLLSSRT  167 (790)
Q Consensus       136 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~  167 (790)
                      |.|.+|.+...-....++.|++|++|.+-+|+
T Consensus        93 L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   93 LILTNNSIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             EEecCcchhhhhhcchhccCCccceeeecCCc
Confidence            99999988643223345666777777666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.44  E-value=6.2e-06  Score=84.40  Aligned_cols=298  Identities=16%  Similarity=0.072  Sum_probs=146.3

Q ss_pred             CCCEEecCCCcCcccCC--cccCCCCCCcEEEccCCCC-CCCC-hhhhcCCCCCCEEeCcCC-cCccccchhhhhCCCCC
Q 036932           84 NLSEFILRGINIKGHLP--DCLKNLSHLKVLDISYNQL-SGTL-PSAITTLTSLEYLALLDN-NFEGTFLLNSLANHSKL  158 (790)
Q Consensus        84 ~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~i-~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~l~~L  158 (790)
                      .|+.|.+.++.=.+.-+  ..-.+++++++|++.++.. +..- -..-..+++|++|++..+ .++..........+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            56666666664332211  2234567777776666642 1111 112235677777777663 33332222233456777


Q ss_pred             cEEEccCCCCCcccccC-CCCCCccceEEeCCCCCCCC---cchhhhCCCCCCEEEccCCC-CCCcCchh-HhhCCCCCc
Q 036932          159 EVLLLSSRTNMLSVKTE-NFLPTFQLKVLGLPNYNLKV---IPSFLLHQYDLKLLDLSGNN-LVGDFPTW-VLRNNTKLE  232 (790)
Q Consensus       159 ~~L~L~~n~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~---lp~~l~~l~~L~~L~Ls~n~-l~~~ip~~-~~~~l~~L~  232 (790)
                      ++++++++..+..-... -...+..++.+.+.+|.-..   +-..-..+..+..+++..+. ++ ...-| +...+..|+
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT-D~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT-DEDLWLIACGCHALQ  297 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc-chHHHHHhhhhhHhh
Confidence            77777776543331111 11233345555444432211   11111233345555554442 22 22111 223456677


Q ss_pred             EEeccCCccccccc-CC-CCCCCCCCEEEeecCC-CCccCChhHHhhcccccEecccCCccccc--cchhhhcccccccc
Q 036932          233 ALFLTNNSFTGNLQ-LP-KTKHDFLHHLDVSNNN-LTGKLPEDMGIILQKLLYIDMSDNRFEGY--LPSSIGEMKALIFL  307 (790)
Q Consensus       233 ~L~L~~n~l~~~~~-~~-~~~~~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L  307 (790)
                      +++.+++...+... .. .....+|+.+.++.++ ++..--..+..+.+.|+.+++..+.....  +...-.+++.|+.+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            77776654322111 11 1255677777777765 23222223344567788888777754311  12222356778888


Q ss_pred             cCcccccccccC----hhhhhcCCcCcEEEccCCcCcc-cccccccCCCCCcEEEcCCcccc-c-ccccccCCCCCCcEE
Q 036932          308 RLPKNNFSGELP----APLLTGCISLGLLDLSGNNFYG-QIFPKYMNLTQLEFLYLENNKFS-G-KIEEGLSNSNELNEL  380 (790)
Q Consensus       308 ~Ls~n~l~~~i~----~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~~L  380 (790)
                      .++++.....-.    ...-.+...|..+.|+++.... .....+..+++|+.+++.++.-- . .+...-.+++++++.
T Consensus       378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            888775431110    1111345668888888876542 22334567788888888877521 1 122223455655554


Q ss_pred             Ec
Q 036932          381 DI  382 (790)
Q Consensus       381 ~L  382 (790)
                      .+
T Consensus       458 a~  459 (483)
T KOG4341|consen  458 AY  459 (483)
T ss_pred             hh
Confidence            43

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.44  E-value=8.5e-06  Score=83.42  Aligned_cols=282  Identities=18%  Similarity=0.073  Sum_probs=130.4

Q ss_pred             CCCcEEEccCCCCCCCCh--hhhcCCCCCCEEeCcCCcCccc-cchhhhhCCCCCcEEEccCCCCCcccccC-CCCCCcc
Q 036932          107 SHLKVLDISYNQLSGTLP--SAITTLTSLEYLALLDNNFEGT-FLLNSLANHSKLEVLLLSSRTNMLSVKTE-NFLPTFQ  182 (790)
Q Consensus       107 ~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~~  182 (790)
                      ..|+.|.+++++=.+.-+  ....+++++++|.+.++..... .-...-..+++|+++++..+..+...... .-..+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            467888888776544322  3456788888888887753211 11122355778888887765544333222 1123445


Q ss_pred             ceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccC--CCCCCCCCCEEEe
Q 036932          183 LKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQL--PKTKHDFLHHLDV  260 (790)
Q Consensus       183 L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~L  260 (790)
                      |++++++++.-                      +++.--..+..+++.++.+.+.+|.-.+....  ....+..+..+++
T Consensus       218 L~~lNlSwc~q----------------------i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl  275 (483)
T KOG4341|consen  218 LKYLNLSWCPQ----------------------ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL  275 (483)
T ss_pred             HHHhhhccCch----------------------hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence            55555555432                      22211112233444444443333321110000  0112333444444


Q ss_pred             ecCCC-CccCChhHHhhcccccEecccCCccc-cccchhhh-cccccccccCcccccccccC-hhhhhcCCcCcEEEccC
Q 036932          261 SNNNL-TGKLPEDMGIILQKLLYIDMSDNRFE-GYLPSSIG-EMKALIFLRLPKNNFSGELP-APLLTGCISLGLLDLSG  336 (790)
Q Consensus       261 s~n~l-~~~~p~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~-~l~~L~~L~Ls~n~l~~~i~-~~~~~~l~~L~~L~L~~  336 (790)
                      ..+.. +..---.+...+.+|++++.+++.-. ...-.+++ +..+|+.+.++.++--+..- ..+..+++.|+.+++..
T Consensus       276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~  355 (483)
T KOG4341|consen  276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE  355 (483)
T ss_pred             hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence            44421 11100111223456666666665432 11112222 35566666666665221221 12224556677776666


Q ss_pred             CcCccc--ccccccCCCCCcEEEcCCccccccc-----ccccCCCCCCcEEEcccccCcC-CCchhhhhccCCCeEEEcc
Q 036932          337 NNFYGQ--IFPKYMNLTQLEFLYLENNKFSGKI-----EEGLSNSNELNELDISNNLLSG-HIPHWIGNFSSDLKVLLMS  408 (790)
Q Consensus       337 n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~~~~~L~~L~l~  408 (790)
                      +.....  +...-.+++.|+.+.+++|......     ...-..+..++.+.+++++... ..-..+..+.. |+.+++.
T Consensus       356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~-Leri~l~  434 (483)
T KOG4341|consen  356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN-LERIELI  434 (483)
T ss_pred             cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc-cceeeee
Confidence            654321  1111235667777777766432111     1122344567777777776431 22233344444 7776666


Q ss_pred             Ccc
Q 036932          409 KMF  411 (790)
Q Consensus       409 ~n~  411 (790)
                      .+.
T Consensus       435 ~~q  437 (483)
T KOG4341|consen  435 DCQ  437 (483)
T ss_pred             chh
Confidence            654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.38  E-value=0.00071  Score=71.49  Aligned_cols=35  Identities=14%  Similarity=0.157  Sum_probs=20.9

Q ss_pred             cCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCC
Q 036932          103 LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDN  141 (790)
Q Consensus       103 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  141 (790)
                      +..+.++++|++++|.++ .+|.   --++|++|.++++
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc   82 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENC   82 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCC
Confidence            334677777777777666 3341   1235777777653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.38  E-value=0.00011  Score=84.27  Aligned_cols=84  Identities=21%  Similarity=0.261  Sum_probs=38.9

Q ss_pred             CCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCC-CChhhhcCCCCCCE
Q 036932           57 LKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG-TLPSAITTLTSLEY  135 (790)
Q Consensus        57 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~  135 (790)
                      +|.|+.|.+++-.+....-.....++++|..||+|+++++..  ..++++++|+.|.+.+=.+.. ..-..+.+|++|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            455555555554443221112233455555555555555432  344555555555555444432 11223445555555


Q ss_pred             EeCcCCc
Q 036932          136 LALLDNN  142 (790)
Q Consensus       136 L~Ls~n~  142 (790)
                      ||+|...
T Consensus       225 LDIS~~~  231 (699)
T KOG3665|consen  225 LDISRDK  231 (699)
T ss_pred             eeccccc
Confidence            5555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.36  E-value=0.00024  Score=63.89  Aligned_cols=62  Identities=18%  Similarity=0.163  Sum_probs=22.1

Q ss_pred             hhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEeccc
Q 036932          222 TWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMS  286 (790)
Q Consensus       222 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls  286 (790)
                      ...|.++++|+.+.+.. .+.......+..+++|+.+.+..+ +. .++...+..+++++.+.+.
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccc
Confidence            33444445555555442 233333333444444555554443 33 4444444444444554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=5.7e-05  Score=73.28  Aligned_cols=100  Identities=32%  Similarity=0.391  Sum_probs=64.0

Q ss_pred             CCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccC-CcccCCCCCCcEEE
Q 036932           35 LTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHL-PDCLKNLSHLKVLD  113 (790)
Q Consensus        35 l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~  113 (790)
                      +.+.+.|++.++.+..+.-..+++.|++|.||-|+|+...   .+..+++|++|+|..|.|...- -..+.++++|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            5566777888887777777777888888888888777543   3666777777777777665321 12346677777777


Q ss_pred             ccCCCCCCCChh-----hhcCCCCCCEEe
Q 036932          114 ISYNQLSGTLPS-----AITTLTSLEYLA  137 (790)
Q Consensus       114 Ls~n~i~~~~~~-----~~~~l~~L~~L~  137 (790)
                      |..|.-.|..+.     .+.-|++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            777665544332     244455555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.69  E-value=0.001  Score=64.76  Aligned_cols=63  Identities=35%  Similarity=0.436  Sum_probs=31.8

Q ss_pred             cCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCC--CCCcCccccCCCCCCCEEecCCCcCc
Q 036932           33 ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNI--SGSSESQGVCELKNLSEFILRGINIK   96 (790)
Q Consensus        33 ~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i--~~~~~~~~~~~l~~L~~L~L~~n~l~   96 (790)
                      ..+..|+.|++.+..++.+..+..+++|++|++|.|..  .+..+. ....+++|++|++++|.+.
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccc
Confidence            34455555555555555555666666666666666633  221111 1223355555555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.0001  Score=71.49  Aligned_cols=99  Identities=25%  Similarity=0.195  Sum_probs=82.6

Q ss_pred             CccceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCC
Q 036932           13 SNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG   92 (790)
Q Consensus        13 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~   92 (790)
                      ..+.|..=||.+..|  +-..+++.|++|.||-|.|+.+..+..|+.|+.|+|..|.|.+..+...+.++++|+.|-|..
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            345566667777754  467899999999999999999999999999999999999999877777788999999999999


Q ss_pred             CcCcccCCc-----ccCCCCCCcEEE
Q 036932           93 INIKGHLPD-----CLKNLSHLKVLD  113 (790)
Q Consensus        93 n~l~~~~~~-----~~~~l~~L~~L~  113 (790)
                      |.-.|.-+.     .+.-+++|+.||
T Consensus        98 NPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   98 NPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CCcccccchhHHHHHHHHcccchhcc
Confidence            877665443     356788888887

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.52  E-value=0.00089  Score=65.11  Aligned_cols=61  Identities=23%  Similarity=0.294  Sum_probs=27.5

Q ss_pred             CCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCC--cCcccCCcccCCCCCCcEEEccCCCCC
Q 036932           57 LKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI--NIKGHLPDCLKNLSHLKVLDISYNQLS  120 (790)
Q Consensus        57 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~  120 (790)
                      ...|+.|.+.+..++..   ..+-.+++|++|.++.|  .+.+.++....++++|++|++++|+|.
T Consensus        42 ~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            33444444444444321   12344455555555555  333333333344455555555555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.32  E-value=0.0015  Score=37.90  Aligned_cols=20  Identities=40%  Similarity=0.718  Sum_probs=11.3

Q ss_pred             CCEEEccCCcccccCCccccC
Q 036932          661 IESLDLSHNRLSGQVPPRLTE  681 (790)
Q Consensus       661 L~~LdLs~N~lsg~ip~~l~~  681 (790)
                      |+.||||+|+|+ .||.+|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            556666666666 55555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.48  E-value=0.0056  Score=69.03  Aligned_cols=114  Identities=25%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             CCCCCCEEeCCCCCC-CCCcCccccCCCCCCCEEecCCC-cCcccCC----cccCCCCCCcEEEccCCC-CCCCChhhhc
Q 036932           56 KLKNLEALDLSYNNI-SGSSESQGVCELKNLSEFILRGI-NIKGHLP----DCLKNLSHLKVLDISYNQ-LSGTLPSAIT  128 (790)
Q Consensus        56 ~l~~L~~L~Ls~n~i-~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~  128 (790)
                      .++.|+.|.+.++.- ....-......+++|++|+++++ ......+    .....+++|+.|+++++. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            366777777766532 21111123456677777777662 1111111    123445777777777776 4444333333


Q ss_pred             C-CCCCCEEeCcCCc-CccccchhhhhCCCCCcEEEccCCCCC
Q 036932          129 T-LTSLEYLALLDNN-FEGTFLLNSLANHSKLEVLLLSSRTNM  169 (790)
Q Consensus       129 ~-l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~L~~n~~~  169 (790)
                      . +++|++|.+.++. ++..-.......++.|++|+++.+...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            3 6777777766665 454333344556777777777766543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.33  E-value=0.0076  Score=34.91  Aligned_cols=20  Identities=60%  Similarity=0.720  Sum_probs=10.5

Q ss_pred             ecceeccCCccccccCccccC
Q 036932          637 IRGLNLSYNFLSGSIPGSFSN  657 (790)
Q Consensus       637 L~~L~Ls~N~l~g~ip~~l~~  657 (790)
                      |+.|||++|+|+ .+|.+|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            445555555555 45554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.18  E-value=0.0034  Score=70.82  Aligned_cols=35  Identities=26%  Similarity=0.248  Sum_probs=18.5

Q ss_pred             CcEEeccCCcccccC-chhhhc-CccccEEeccCccc
Q 036932          473 LITLDLRDNRFSGVI-PHQISE-SLTLRFLLLRGNYL  507 (790)
Q Consensus       473 L~~L~L~~N~l~~~~-p~~~~~-l~~L~~L~L~~N~l  507 (790)
                      ++.|+++.+...... -..... +..++.+++.+...
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            777777777644221 111111 55566666666544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.43  E-value=0.0021  Score=61.04  Aligned_cols=102  Identities=21%  Similarity=0.144  Sum_probs=74.5

Q ss_pred             ceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCccc-cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCc
Q 036932           16 WLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN   94 (790)
Q Consensus        16 ~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   94 (790)
                      ++.++.+....++...+..+++.++||++.|++..+. .|.-++.|..||++.|++.-.+  ..+..+..++.+++..|+
T Consensus        22 tc~~s~s~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~--~d~~q~~e~~~~~~~~n~   99 (326)
T KOG0473|consen   22 TCDLSLSELSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLP--KDAKQQRETVNAASHKNN   99 (326)
T ss_pred             ccCCCHHHhcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhCh--hhHHHHHHHHHHHhhccc
Confidence            4555666777888888999999999999999877443 4677788888888888876332  346666667777777776


Q ss_pred             CcccCCcccCCCCCCcEEEccCCCCC
Q 036932           95 IKGHLPDCLKNLSHLKVLDISYNQLS  120 (790)
Q Consensus        95 l~~~~~~~~~~l~~L~~L~Ls~n~i~  120 (790)
                      .+ ..|.+++..++++++++..|.+.
T Consensus       100 ~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  100 HS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hh-hCCccccccCCcchhhhccCcch
Confidence            66 56777777777777777777644

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.96  E-value=0.011  Score=56.26  Aligned_cols=83  Identities=20%  Similarity=0.169  Sum_probs=71.1

Q ss_pred             cccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 036932          611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFN  689 (790)
Q Consensus       611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~  689 (790)
                      ....+.||++.|++. .....+..++ +..||+|.|++. ..|+.++.+.+++.+++..|.++ ..|.++..++.+.+++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            356788999999987 4445556665 888999999998 78999999999999999999998 7899999999999999


Q ss_pred             cccCcce
Q 036932          690 VSFNNLS  696 (790)
Q Consensus       690 ls~N~l~  696 (790)
                      +..|+|.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999875

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.61  E-value=0.0046  Score=68.08  Aligned_cols=65  Identities=26%  Similarity=0.222  Sum_probs=36.3

Q ss_pred             hccCCCCCEEecCCccccCcccccc-----c-ccccceeeccCCcCccc----cchhhcCCCCCcEEeccCCccc
Q 036932          420 LLNHGSLNLLSVSENCLSGPMTSSF-----N-LSSLEHLYLQMNSLSGP----IPIALFRSSNLITLDLRDNRFS  484 (790)
Q Consensus       420 ~~~~~~L~~L~l~~n~l~~~~~~~~-----~-l~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~L~~N~l~  484 (790)
                      +.....|..|+++.|.+.+......     . -..+++|++..|.+++.    +...+.....++.+|++.|.+.
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI  185 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence            3345566666666666653222111     1 14566667776766532    4455555667777777777664

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.42  E-value=0.12  Score=27.74  Aligned_cols=13  Identities=54%  Similarity=0.800  Sum_probs=6.1

Q ss_pred             CCCEEEccCCccc
Q 036932          660 WIESLDLSHNRLS  672 (790)
Q Consensus       660 ~L~~LdLs~N~ls  672 (790)
                      +|+.|||++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4566666666654

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.22  E-value=0.0066  Score=66.85  Aligned_cols=44  Identities=30%  Similarity=0.301  Sum_probs=20.1

Q ss_pred             ccccCCCCCCEEEccCCcccccCCccccC----CCCCCeEecccCcce
Q 036932          653 GSFSNLKWIESLDLSHNRLSGQVPPRLTE----LNFLSNFNVSFNNLS  696 (790)
Q Consensus       653 ~~l~~l~~L~~LdLs~N~lsg~ip~~l~~----l~~L~~L~ls~N~l~  696 (790)
                      ..+.....++++++++|.....-+..+..    ...+..++++.|+.+
T Consensus       398 ~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~  445 (478)
T KOG4308|consen  398 AQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPIT  445 (478)
T ss_pred             hhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhh
Confidence            33444455555555555554433332221    114455555555443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.18  E-value=0.15  Score=30.78  Aligned_cols=21  Identities=43%  Similarity=0.528  Sum_probs=14.2

Q ss_pred             CCCCCEEEccCCcccccCCcc
Q 036932          658 LKWIESLDLSHNRLSGQVPPR  678 (790)
Q Consensus       658 l~~L~~LdLs~N~lsg~ip~~  678 (790)
                      |++|+.|+|++|+|+...+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467788888888887443333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.18  E-value=0.15  Score=30.78  Aligned_cols=21  Identities=43%  Similarity=0.528  Sum_probs=14.2

Q ss_pred             CCCCCEEEccCCcccccCCcc
Q 036932          658 LKWIESLDLSHNRLSGQVPPR  678 (790)
Q Consensus       658 l~~L~~LdLs~N~lsg~ip~~  678 (790)
                      |++|+.|+|++|+|+...+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467788888888887443333

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.96  E-value=0.069  Score=31.60  Aligned_cols=22  Identities=32%  Similarity=0.441  Sum_probs=12.7

Q ss_pred             CCCCCEEEccCCcccccCCccc
Q 036932          658 LKWIESLDLSHNRLSGQVPPRL  679 (790)
Q Consensus       658 l~~L~~LdLs~N~lsg~ip~~l  679 (790)
                      +++|+.|||++|+|++....++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3567778888887776555443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.63  E-value=0.57  Score=28.21  Aligned_cols=16  Identities=50%  Similarity=0.636  Sum_probs=9.2

Q ss_pred             CCCcEEEccCCCCCCC
Q 036932          107 SHLKVLDISYNQLSGT  122 (790)
Q Consensus       107 ~~L~~L~Ls~n~i~~~  122 (790)
                      ++|++|+|++|+|+.+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.63  E-value=0.57  Score=28.21  Aligned_cols=16  Identities=50%  Similarity=0.636  Sum_probs=9.2

Q ss_pred             CCCcEEEccCCCCCCC
Q 036932          107 SHLKVLDISYNQLSGT  122 (790)
Q Consensus       107 ~~L~~L~Ls~n~i~~~  122 (790)
                      ++|++|+|++|+|+.+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.43  E-value=0.32  Score=28.68  Aligned_cols=16  Identities=44%  Similarity=0.598  Sum_probs=6.8

Q ss_pred             CCCcEEeccCCccccc
Q 036932          471 SNLITLDLRDNRFSGV  486 (790)
Q Consensus       471 ~~L~~L~L~~N~l~~~  486 (790)
                      ++|+.|+|++|++++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            3455555555555433

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.76  E-value=1.6  Score=26.41  Aligned_cols=17  Identities=47%  Similarity=0.560  Sum_probs=8.5

Q ss_pred             CCCCEEEcCCCCCCccc
Q 036932           36 TNLKILDLSGCGITTLQ   52 (790)
Q Consensus        36 ~~L~~L~Ls~n~i~~~~   52 (790)
                      ++|++|++++|+|+.++
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            44555555555554433

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.42  E-value=1.4  Score=26.66  Aligned_cols=15  Identities=47%  Similarity=0.725  Sum_probs=11.8

Q ss_pred             CCCCCEEEccCCccc
Q 036932          658 LKWIESLDLSHNRLS  672 (790)
Q Consensus       658 l~~L~~LdLs~N~ls  672 (790)
                      +++|+.|+|++|+|+
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            467888888888885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	790
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-46
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-46
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-10
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		3e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		4e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		7e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 216/711 (30%), Positives = 309/711 (43%), Gaps = 99/711 (13%)
Query: 50  TLQGLTKLKNLEALDLSYNNISG---SSESQGVCELKNLSEFILRGINIKGHLPDCLKNL 106
           ++ G     +L +LDLS N++SG   +  S G C            ++  G +   LK L
Sbjct: 92  SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-L 150
Query: 107 SHLKVLDISYNQLSGTLPSAITTLTS-----LEYLALLDNNFEGTFLLNSLANHSKLEVL 161
           + L+VLD+S N +SG   + +  + S     L++LA+  N   G   ++   N   LE  
Sbjct: 151 NSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN---LE-- 203
Query: 162 LLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFXXXXXXXXXXXXSGNNLVGDFP 221
                   L V + NF         G+P         F            SGN L GDF 
Sbjct: 204 -------FLDVSSNNF-------STGIP---------FLGDCSALQHLDISGNKLSGDF- 239
Query: 222 TWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLL 281
           +  +   T+L+ L +++N F G   +P      L +L ++ N  TG++P+ +      L 
Sbjct: 240 SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 282 YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG 341
            +D+S N F G +P   G    L  L L  NNFSGELP   L     L +LDLS N F G
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 342 QIFPKYMNLT-QLEFLYLENNKFSGKIXXXXXXXXXXXXXXXXXXXXXGHIPHWIGNFSS 400
           ++     NL+  L  L L +N FSG I                       +P+   N  +
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPI-----------------------LPNLCQNPKN 394
Query: 401 DLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSL 459
            L+ L +      G IP  L N   L  L +S N LSG + SS  +LS L  L L +N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 460 SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLR 519
            G IP  L     L TL L  N  +G IP  +S    L ++ L  N L G+IP  + +L 
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 520 RLGVLDLSHNRISGSIPSCL--TIMLLWVAGNVYLHE---PYLQF-----FSAIFVGSIG 569
            L +L LS+N  SG+IP+ L     L+W+  N  L     P   F      +A F+    
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 570 TYY--NSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIK--------------- 612
             Y  N       +G G    F Q ++ E +  NR    N  NI                
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEF-QGIRSEQL--NRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 613 -YMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNR 670
             M+ LD+S N L+G IP EIG +  +  LNL +N +SGSIP    +L+ +  LDLS N+
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 671 LSGQVPPRLTEXXXXXXXXXXXXXXXGLIPDKGQFATFDESSYRGNLHLCG 721
           L G++P  ++                G IP+ GQF TF  + +  N  LCG
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 216/711 (30%), Positives = 309/711 (43%), Gaps = 99/711 (13%)
Query: 50  TLQGLTKLKNLEALDLSYNNISG---SSESQGVCELKNLSEFILRGINIKGHLPDCLKNL 106
           ++ G     +L +LDLS N++SG   +  S G C            ++  G +   LK L
Sbjct: 89  SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-L 147
Query: 107 SHLKVLDISYNQLSGTLPSAITTLTS-----LEYLALLDNNFEGTFLLNSLANHSKLEVL 161
           + L+VLD+S N +SG   + +  + S     L++LA+  N   G   ++   N   LE  
Sbjct: 148 NSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN---LE-- 200
Query: 162 LLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFXXXXXXXXXXXXSGNNLVGDFP 221
                   L V + NF         G+P         F            SGN L GDF 
Sbjct: 201 -------FLDVSSNNF-------STGIP---------FLGDCSALQHLDISGNKLSGDF- 236
Query: 222 TWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLL 281
           +  +   T+L+ L +++N F G   +P      L +L ++ N  TG++P+ +      L 
Sbjct: 237 SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 282 YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG 341
            +D+S N F G +P   G    L  L L  NNFSGELP   L     L +LDLS N F G
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 354
Query: 342 QIFPKYMNLT-QLEFLYLENNKFSGKIXXXXXXXXXXXXXXXXXXXXXGHIPHWIGNFSS 400
           ++     NL+  L  L L +N FSG I                       +P+   N  +
Sbjct: 355 ELPESLTNLSASLLTLDLSSNNFSGPI-----------------------LPNLCQNPKN 391
Query: 401 DLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSL 459
            L+ L +      G IP  L N   L  L +S N LSG + SS  +LS L  L L +N L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 460 SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLR 519
            G IP  L     L TL L  N  +G IP  +S    L ++ L  N L G+IP  + +L 
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 520 RLGVLDLSHNRISGSIPSCL--TIMLLWVAGNVYLHE---PYLQF-----FSAIFVGSIG 569
            L +L LS+N  SG+IP+ L     L+W+  N  L     P   F      +A F+    
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 570 TYY--NSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIK--------------- 612
             Y  N       +G G    F Q ++ E +  NR    N  NI                
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEF-QGIRSEQL--NRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 613 -YMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNR 670
             M+ LD+S N L+G IP EIG +  +  LNL +N +SGSIP    +L+ +  LDLS N+
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 671 LSGQVPPRLTEXXXXXXXXXXXXXXXGLIPDKGQFATFDESSYRGNLHLCG 721
           L G++P  ++                G IP+ GQF TF  + +  N  LCG
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 109/245 (44%), Gaps = 35/245 (14%)
Query: 416 IPAQLLNHGSLNLLSVSE-NCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNL 473
           IP+ L N   LN L +   N L GP+  +   L+ L +LY+   ++SG IP  L +   L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 474 ITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRL-GVLDLSHNRIS 532
           +TLD   N  SG +P  IS    L  +   GN + G IP+      +L   + +S NR++
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 533 GSIPSC---LTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNS-TFHFGHYGNGVYSI 588
           G IP     L +  + ++ N+   +  + F S      I    NS  F  G  G      
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG------ 241
Query: 589 FPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFL 647
                    ++KN            + GLDL  N++ G +P  +  L+ +  LN+S+N L
Sbjct: 242 ---------LSKN------------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 648 SGSIP 652
            G IP
Sbjct: 281 CGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 101/264 (38%), Gaps = 67/264 (25%)
Query: 481 NRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLT 540
           N   G IP  I++   L +L +    + G IP+ L Q++ L  LD S+N +SG++P  ++
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 541 IMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTK 600
            +            P L          +G  ++        GN +    P          
Sbjct: 147 SL------------PNL----------VGITFD--------GNRISGAIP---------- 166
Query: 601 NRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIP---GSFSN 657
           + Y    GS  K    + +S N+LTG IP    +L +  ++LS N L G      GS  N
Sbjct: 167 DSY----GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 658 LKWIE--------------------SLDLSHNRLSGQVPPRLTEXXXXXXXXXXXXXXXG 697
            + I                      LDL +NR+ G +P  LT+               G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 698 LIPDKGQFATFDESSYRGNLHLCG 721
            IP  G    FD S+Y  N  LCG
Sbjct: 283 EIPQGGNLQRFDVSAYANNKCLCG 306

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 29  VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
           +   ANLTNL  L L    IT +  L  L NL  L+LS N IS  S   G+  L+ LS  
Sbjct: 105 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS-- 162
Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
              G  +    P  L NL+ L+ LDIS N++S    S +  LT+LE L   +N       
Sbjct: 163 --FGNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 216
Query: 149 LNSLANHSKLEV 160
           L  L N  +L +
Sbjct: 217 LGILTNLDELSL 228

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 29  VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
           +   ANLTNL  L L    IT +  L  L NL  L+LS N IS  S   G+  L+ LS  
Sbjct: 104 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS-- 161
Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
              G  +    P  L NL+ L+ LDIS N++S    S +  LT+LE L   +N       
Sbjct: 162 --FGNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 215
Query: 149 LNSLANHSKLEV 160
           L  L N  +L +
Sbjct: 216 LGILTNLDELSL 227

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 29  VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
           +   ANLTNL  L L    IT +  L  L NL  L+LS N IS  S   G+  L+ LS  
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFS 159
Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
             +  ++K      L NL+ L+ LDIS N++S    S +  LT+LE L   +N       
Sbjct: 160 SNQVTDLK-----PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Query: 149 LNSLANHSKLEV 160
           L  L N  +L +
Sbjct: 213 LGILTNLDELSL 224

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 29  VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
           +   ANLTNL  L L    IT +  L  L NL  L+LS N IS  S   G+  L+ LS  
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFS 159
Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
             +  ++K      L NL+ L+ LDIS N++S    S +  LT+LE L   +N       
Sbjct: 160 SNQVTDLK-----PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Query: 149 LNSLANHSKLEV 160
           L  L N  +L +
Sbjct: 213 LGILTNLDELSL 224

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 29  VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
           +   ANLTNL  L L    IT +  L  L NL  L+LS N IS  S   G+  L+ L   
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL--- 156
Query: 89  ILRGINIKGHLPDC--LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGT 146
                N    + D   L NL+ L+ LDIS N++S    S +  LT+LE L   +N     
Sbjct: 157 -----NFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 209
Query: 147 FLLNSLANHSKLEV 160
             L  L N  +L +
Sbjct: 210 TPLGILTNLDELSL 223

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 29  VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
           +   ANLTNL  L L    IT +  L  L NL  L+LS N IS  S   G+  L+ L   
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL--- 156
Query: 89  ILRGINIKGHLPDC--LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGT 146
                N    + D   L NL+ L+ LDIS N++S    S +  LT+LE L   +N     
Sbjct: 157 -----NFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 209
Query: 147 FLLNSLANHSKLEV 160
             L  L N  +L +
Sbjct: 210 TPLGILTNLDELSL 223

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 36  TNLKILDLSGCGITTLQG-LTKLKNLEALDLSYNNISGSSESQGVCELKNL--------- 85
           T+LK LDLS  G+ T+      L+ LE LD  ++N+   SE      L+NL         
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 86  SEFILRGI----------NIKGH------LPDCLKNLSHLKVLDISYNQLSGTLPSAITT 129
           +     GI           + G+      LPD    L +L  LD+S  QL    P+A  +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 130 LTSLEYLALLDNNF 143
           L+SL+ L +  NNF
Sbjct: 493 LSSLQVLNMSHNNF 506

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 29  VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
           +   ANLTNL  L L    IT +  L  L NL  L+LS N IS  S   G+  L+ L+  
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFS 159
Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
             +  ++K      L NL+ L+ LDIS N++S    S +  LT+LE L   +N       
Sbjct: 160 SNQVTDLK-----PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Query: 149 LNSLANHSKLEV 160
           L  L N  +L +
Sbjct: 213 LGILTNLDELSL 224

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 36  TNLKILDLSGCGITTLQG-LTKLKNLEALDLSYNNISGSSESQGVCELKNL--------- 85
           T+LK LDLS  G+ T+      L+ LE LD  ++N+   SE      L+NL         
Sbjct: 78  TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 86  SEFILRGI----------NIKGH------LPDCLKNLSHLKVLDISYNQLSGTLPSAITT 129
           +     GI           + G+      LPD    L +L  LD+S  QL    P+A  +
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Query: 130 LTSLEYLALLDNNF 143
           L+SL+ L +  NNF
Sbjct: 198 LSSLQVLNMSHNNF 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	790
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-167
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-101
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-70
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-50
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  501 bits (1292), Expect = e-167
 Identities = 218/716 (30%), Positives = 319/716 (44%), Gaps = 48/716 (6%)

Query: 32  FANLTNLKILDLSGCGIT-TLQGLTKLKNLEALDLSYNNISGS-SESQGVCELKNLSEFI 89
             +LT L+ L LS   I  ++ G     +L +LDLS N++SG  +    +     L    
Sbjct: 73  LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132

Query: 90  LRGINIKGHLPD-CLKNLSHLKVLDISYNQLSGTLPSAITT---LTSLEYLALLDNNFEG 145
           +    +           L+ L+VLD+S N +SG              L++LA+  N   G
Sbjct: 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192

Query: 146 TFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYD 205
                 ++    LE L +SS  N  S                        IP        
Sbjct: 193 DV---DVSRCVNLEFLDVSS--NNFSTG----------------------IPFLGDCS-A 224

Query: 206 LKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNL 265
           L+ LD+SGN L GDF    +   T+L+ L +++N F G   +P      L +L ++ N  
Sbjct: 225 LQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKF 281

Query: 266 TGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTG 325
           TG++P+ +      L  +D+S N F G +P   G    L  L L  NNFSGELP   L  
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 326 CISLGLLDLSGNNFYGQIFPKYMNLT-QLEFLYLENNKFSGKIEEGLSNS--NELNELDI 382
              L +LDLS N F G++     NL+  L  L L +N FSG I   L  +  N L EL +
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 383 SNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTS 442
            NN  +G IP  + N S  L  L +S  +L G IP+ L +   L  L +  N L G +  
Sbjct: 402 QNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 443 SF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLL 501
               + +LE L L  N L+G IP  L   +NL  + L +NR +G IP  I     L  L 
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520

Query: 502 LRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFS 561
           L  N   G IP +L   R L  LDL+ N  +G+IP+ +      +A N ++      +  
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN-FIAGKRYVYIK 579

Query: 562 AIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRY---ELYNGSNIKYMVGLD 618
              +        +   F    +   +           T   Y         N   M+ LD
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI-TSRVYGGHTSPTFDNNGSMMFLD 638

Query: 619 LSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPP 677
           +S N L+G IP EIG +  +  LNL +N +SGSIP    +L+ +  LDLS N+L G++P 
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698

Query: 678 RLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTEE 733
            ++ L  L+  ++S NNLSG IP+ GQF TF  + +  N  LCG  + +   S  +
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNAD 754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  328 bits (844), Expect = e-101
 Identities = 145/529 (27%), Positives = 222/529 (41%), Gaps = 41/529 (7%)

Query: 18  FNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQ 77
            N+ S       V       LK L +SG  I+    +++  NLE LD+S NN S      
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF- 218

Query: 78  GVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA 137
            + +   L    + G  + G     +   + LK+L+IS NQ  G +P     L SL+YL+
Sbjct: 219 -LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLS 275

Query: 138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP 197
           L +N F G            L  L LS   N                  G        +P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSG--NHFY---------------G-------AVP 311

Query: 198 SFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKT---KHDF 254
            F      L+ L LS NN  G+ P   L     L+ L L+ N F+G  +LP++       
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSAS 369

Query: 255 LHHLDVSNNNLTGKLPEDMG-IILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNN 313
           L  LD+S+NN +G +  ++       L  + + +N F G +P ++     L+ L L  N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 314 FSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSN 373
            SG +P   L     L  L L  N   G+I  + M +  LE L L+ N  +G+I  GLSN
Sbjct: 430 LSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSE 433
              LN + +SNN L+G IP WIG   + L +L +S     GNIPA+L +  SL  L ++ 
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLEN-LAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

Query: 434 NCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN--RFSGVIPHQI 491
           N  +G + ++    S +   +  N ++G   + +             N   F G+   Q+
Sbjct: 548 NLFNGTIPAAMFKQSGK---IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604

Query: 492 SESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLT 540
           +   T     +      G           +  LD+S+N +SG IP  + 
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  145 bits (367), Expect = 4e-36
 Identities = 68/295 (23%), Positives = 111/295 (37%), Gaps = 58/295 (19%)

Query: 414 GNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIP--IALFRSS 471
             + + LL+   L  L +S + ++G ++     +SL  L L  NSLSGP+    +L   S
Sbjct: 67  SAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126

Query: 472 NLITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNYLEGQIPNQLCQ---LRRLGVLDLS 527
            L  L++  N             L  L  L L  N + G              L  L +S
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186

Query: 528 HNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYS 587
            N+ISG +     + L            +L   S  F   I                   
Sbjct: 187 GNKISGDVDVSRCVNLE-----------FLDVSSNNFSTGI------------------- 216

Query: 588 IFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNF 646
             P L                 +   +  LD+S N+L+G     I    +++ LN+S N 
Sbjct: 217 --PFL----------------GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 647 LSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLT-ELNFLSNFNVSFNNLSGLIP 700
             G IP     LK ++ L L+ N+ +G++P  L+   + L+  ++S N+  G +P
Sbjct: 259 FVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.9 bits (185), Expect = 5e-14
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 17  LFNNASNILFFIVVGFANLTNLKILDLSGCGIT--TLQGLTKLKNLEALDLSYNNISGS- 73
              N              L+     +++       T        ++  LD+SYN +SG  
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 74  -SESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTS 132
             E   +  +  L    L   +I G +PD + +L  L +LD+S N+L G +P A++ LT 
Sbjct: 649 PKE---IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 133 LEYLALLDNNFEG 145
           L  + L +NN  G
Sbjct: 706 LTEIDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.5 bits (163), Expect = 2e-11
 Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 615 VGLDLSCNQLTGG---IPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNR 670
             +DLS   L  G   + S +  L  +  L LS + ++GS+   F     + SLDLS N 
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNS 111

Query: 671 LSGQVPPR--LTELNFLSNFNVSFNNLSGLIP 700
           LSG V     L   + L   NVS N L     
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 8e-07
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 639 GLNLSYNFLS---GSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNL 695
            ++LS   L+    ++  S  +L  +ESL LS++ ++G V         L++ ++S N+L
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSL 112

Query: 696 SGLIPDKGQFA 706
           SG +       
Sbjct: 113 SGPVTTLTSLG 123

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  242 bits (621), Expect = 3e-70
 Identities = 135/692 (19%), Positives = 235/692 (33%), Gaps = 74/692 (10%)

Query: 36  TNLKILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN 94
            + ++ D S   +T +   L    N+  L+L++N +     +        L+   +    
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNT 60

Query: 95  IKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLAN 154
           I    P+  + L  LKVL++ +N+LS          T+L  L L+ N+ +     N    
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVK 119

Query: 155 HSKLEVLLLSSRTNMLS-VKTENFLPTFQLKVLGLPNYNLKVIPS---FLLHQYDLKLLD 210
              L  L LS   N LS  K    +    L+ L L N  ++ + S    +     LK L+
Sbjct: 120 QKNLITLDLSH--NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

Query: 211 LSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF---LHHLDVSNNNLTG 267
           LS N +    P        +L  LFL N     +L            + +L +SN+ L+ 
Sbjct: 178 LSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236

Query: 268 KLPEDM--GIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTG 325
                   G+    L  +D+S N        S   +  L +  L  NN    L +  L G
Sbjct: 237 -TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHG 294

Query: 326 CISLGLLDLSGNNFYGQIFPKYM---------NLTQLEFLYLENNKFSGKIEEGLSNSNE 376
             ++  L+L  +     I    +          L  LE L +E+N   G      +    
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354

Query: 377 LNELDISNNLLSGHIPH---WIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSE 433
           L  L +SN+  S        ++    S L +L ++K  +           G L +L +  
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 434 NCLSGPMTSSF--NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGV--IPH 489
           N +   +T      L ++  +YL  N        +     +L  L LR      V   P 
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 490 QISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGN 549
                  L  L L  N +     + L  L +L +LDL HN ++           ++    
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 550 VYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGS 609
           +     +L   +                     NG   I  ++ K               
Sbjct: 535 L----SHLHILNL------------------ESNGFDEIPVEVFK--------------- 557

Query: 610 NIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFS-NLKWIESLDLS 667
           ++  +  +DL  N L     S   +   ++ LNL  N ++      F    + +  LD+ 
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 668 HNRLSGQVPPRLTELNFLSNFNVSFNNLSGLI 699
            N            +N+++  + +   LS   
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  225 bits (576), Expect = 7e-64
 Identities = 108/537 (20%), Positives = 189/537 (35%), Gaps = 36/537 (6%)

Query: 35  LTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG 92
            TN+ +L+L+   +  L     T+   L +LD+ +N IS   E +   +L  L    L+ 
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQH 82

Query: 93  INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSL 152
             +           ++L  L +  N +     +      +L  L L  N       L + 
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQ 141

Query: 153 ANHSKLEVLLLSS-RTNMLSVKTENFLPTFQLKVLGLPNYNLK-VIPSFLLHQYDLKLLD 210
                L+ LLLS+ +   L  +  +      LK L L +  +K   P        L  L 
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201

Query: 211 LSGNNLVGDFPTWVLR--NNTKLEALFLTNNSFTG--NLQLPKTKHDFLHHLDVSNNNLT 266
           L+   L       +     NT +  L L+N+  +   N      K   L  LD+S NNL 
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 267 GKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG--------EL 318
             +  D    L +L Y  +  N  +     S+  +  + +L L ++            ++
Sbjct: 262 V-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 319 PAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLS----NS 374
                     L  L++  N+  G     +  L  L++L L N+  S +     +      
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 375 NELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL-NHGSLNLLSVSE 433
           + L+ L+++ N +S             L+VL +    +   +  Q      ++  + +S 
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 434 NCLSGPMTSSF-NLSSLEHLYLQMNSLSG--PIPIALFRSSNLITLDLRDNRFSGVIPHQ 490
           N       +SF  + SL+ L L+  +L      P       NL  LDL +N  + +    
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 491 ISESLTLRFLLLRGNYLE--------GQIPNQLCQLRRLGVLDLSHNRISGSIPSCL 539
           +     L  L L+ N L         G     L  L  L +L+L  N          
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  221 bits (566), Expect = 2e-62
 Identities = 120/548 (21%), Positives = 193/548 (35%), Gaps = 51/548 (9%)

Query: 32  FANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           FA  TNL  L L    I  ++     K KNL  LDLS+N +S +       +L+NL E +
Sbjct: 93  FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELL 151

Query: 90  LRGINIKGHLPDCLK--NLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGT- 146
           L    I+    + L     S LK L++S NQ+    P     +  L  L L +     + 
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 147 -FLLNSLANHSKLEVLLLSSRTNMLSVKTENF---LPTFQLKVLGLPNYNLKVIPSFLLH 202
              L     ++ +  L LS+  + LS  +      L    L +L L   NL V+ +    
Sbjct: 212 TEKLCLELANTSIRNLSLSN--SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 203 Q-YDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVS 261
               L+   L  NN+   F    L     +  L L  +                    +S
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRS---------------FTKQSIS 313

Query: 262 NNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFS-GELPA 320
             +L           L+ L +++M DN   G   +    +  L +L L  +  S   L  
Sbjct: 314 LASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 321 PLLTGCISLGL--LDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEG-LSNSNEL 377
                     L  L+L+ N         +  L  LE L L  N+   ++          +
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 378 NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG--NIPAQLLNHGSLNLLSVSENC 435
            E+ +S N       +      S L+ L++ ++ LK   + P+      +L +L +S N 
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPS-LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 436 LSGPMTSSF-NLSSLEHLYLQMNSLS--------GPIPIALFRSSNLITLDLRDNRFSGV 486
           ++         L  LE L LQ N+L+        G     L   S+L  L+L  N F  +
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551

Query: 487 IPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIML--- 543
                 +   L+ + L  N L     +       L  L+L  N I+              
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611

Query: 544 --LWVAGN 549
             L +  N
Sbjct: 612 TELDMRFN 619

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  220 bits (562), Expect = 6e-62
 Identities = 104/531 (19%), Positives = 185/531 (34%), Gaps = 45/531 (8%)

Query: 32  FANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISG-SSESQGVCELKNLSEF 88
           F    NL  LDLS  G+++       +L+NL+ L LS N I    SE   +    +L + 
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAIT---TLTSLEYLALLDNNFEG 145
            L    IK   P C   +  L  L ++  QL  +L   +      TS+  L+L ++    
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236

Query: 146 TFLLNSLAN--HSKLEVLLLSSRTNMLSVKTENFLPTF-QLKVLGLPNYNLK-VIPSFLL 201
                +      + L +L LS   N L+V   +      QL+   L   N++ +    L 
Sbjct: 237 -TSNTTFLGLKWTNLTMLDLSY--NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 202 HQYDLKLLDLSGNNLVGDF--------PTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHD 253
             ++++ L+L  +                +  +    LE L + +N   G      T   
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 254 FLHHLDVSNNNLTGKLPED---MGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLP 310
            L +L +SN+  + +   +   + +    L  ++++ N+       +   +  L  L L 
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 311 KNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSG--KIE 368
            N    EL      G  ++  + LS N +       +  +  L+ L L            
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 369 EGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNL 428
                   L  LD+SNN ++      +      L++L +       N           NL
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEK-LEILDLQ-----HN-----------NL 516

Query: 429 LSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVI 487
             + ++   G        LS L  L L+ N               L  +DL  N  + + 
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 488 PHQISESLTLRFLLLRGNYLEGQIPNQLC-QLRRLGVLDLSHNRISGSIPS 537
               +  ++L+ L L+ N +            R L  LD+  N    +  S
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  195 bits (499), Expect = 2e-53
 Identities = 103/547 (18%), Positives = 181/547 (33%), Gaps = 76/547 (13%)

Query: 180 TFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN 239
           T   +V    +  L  +P  L    ++ +L+L+ N L    P       ++L +L +  N
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFN 59

Query: 240 SFTGN-----LQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYL 294
           + +        +LP      L  L++ +N L+  L +        L  + +  N  +   
Sbjct: 60  TISKLEPELCQKLPM-----LKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 295 PSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFP--KYMNLTQ 352
            +   + K LI L L  N  S            +L  L LS N               + 
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172

Query: 353 LEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFS--SDLKVLLMSKM 410
           L+ L L +N+              L  L ++N  L   +   +      + ++ L +S  
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 411 FLKGNIPAQL--LNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIAL 467
            L          L   +L +L +S N L+     SF  L  LE+ +L+ N++      +L
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 468 FRSSNLITLDLRDN---------RFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQL 518
               N+  L+L+ +             +          L  L +  N + G   N    L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352

Query: 519 RRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHF 578
             L  L LS++  S    +  T + L    +  LH   L                     
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSL---AHSPLHILNLT-------------------- 389

Query: 579 GHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIP-SEIGDL-Q 636
               N +  I                     +++    LDL  N++   +   E   L  
Sbjct: 390 ---KNKISKIESDA------------FSWLGHLEV---LDLGLNEIGQELTGQEWRGLEN 431

Query: 637 IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSG--QVPPRLTELNFLSNFNVSFNN 694
           I  + LSYN        SF+ +  ++ L L    L      P     L  L+  ++S NN
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 695 LSGLIPD 701
           ++ +  D
Sbjct: 492 IANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  192 bits (491), Expect = 3e-52
 Identities = 98/498 (19%), Positives = 167/498 (33%), Gaps = 45/498 (9%)

Query: 17  LFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGS- 73
           L NN    L    +     ++LK L+LS   I          +  L  L L+   +  S 
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 74  -SESQGVCELKNLSEFILRGINIKGHLPDCLKNL--SHLKVLDISYNQLSGTLPSAITTL 130
             +        ++    L    +          L  ++L +LD+SYN L+     +   L
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271

Query: 131 TSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPN 190
             LEY  L  NN +     +SL     +  L L                        +  
Sbjct: 272 PQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKR----------------SFTKQSISL 314

Query: 191 YNLKVIPSFLLHQ-YDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTG----NL 245
            +L  I  F       L+ L++  N++ G   + +      L+ L L+N+  +     N 
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373

Query: 246 QLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLP-SSIGEMKAL 304
                 H  LH L+++ N ++    +     L  L  +D+  N     L       ++ +
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDAFSW-LGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 305 IFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG--QIFPKYMNLTQLEFLYLENNK 362
             + L  N +   L         SL  L L              +  L  L  L L NN 
Sbjct: 433 FEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 363 FSGKIEEGLSNSNELNELDISNNLLS--------GHIPHWIGNFSSDLKVLLMSKMFLKG 414
            +   ++ L    +L  LD+ +N L+        G   +++   S  L +L +       
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH-LHILNLESNGFDE 550

Query: 415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SN 472
                  +   L ++ +  N L+    S F N  SL+ L LQ N ++         +  N
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610

Query: 473 LITLDLRDNRFSGVIPHQ 490
           L  LD+R N F       
Sbjct: 611 LTELDMRFNPFDCTCESI 628

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  145 bits (367), Expect = 3e-36
 Identities = 72/402 (17%), Positives = 124/402 (30%), Gaps = 39/402 (9%)

Query: 327 ISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNL 386
           +S  + D S         P  +  T +  L L +N+         +  ++L  LD+  N 
Sbjct: 4   VSHEVADCSHLKLTQ--VPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 387 LSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-N 445
           +S   P         LKVL +    L            +L  L +  N +     + F  
Sbjct: 61  ISKLEPELCQKLPM-LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPH--QISESLTLRFLLLR 503
             +L  L L  N LS        +  NL  L L +N+   +      I  + +L+ L L 
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 504 GNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQ--FFS 561
            N ++   P     + RL  L L++ ++  S+   L + L     N  +    L     S
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL----ANTSIRNLSLSNSQLS 235

Query: 562 AIFVGSIGTYYNSTFHFGH-YGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLS 620
                +      +         N +  +                      ++Y     L 
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGND------------SFAWLPQLEY---FFLE 280

Query: 621 CNQLTGGIPSEIGDLQ----------IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNR 670
            N +       +  L               ++S   L      SF  LK +E L++  N 
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340

Query: 671 LSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESS 712
           + G      T L  L   ++S +  S        F +   S 
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  137 bits (348), Expect = 7e-34
 Identities = 80/370 (21%), Positives = 127/370 (34%), Gaps = 44/370 (11%)

Query: 11  QRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYN 68
           +RS      + +++       F  L  L+ L++    I  ++    T L NL+ L LS +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 69  NISGSSESQGVCE---LKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLP- 124
             S  + +           L    L    I     D    L HL+VLD+  N++   L  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 125 SAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLK 184
                L ++  + L  N +      NS A    L+ L+L      L              
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTR-NSFALVPSLQRLMLRR--VALK------------- 467

Query: 185 VLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFT-- 242
                  N+   PS      +L +LDLS NN+       +L    KLE L L +N+    
Sbjct: 468 -------NVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARL 519

Query: 243 ------GNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPS 296
                 G           LH L++ +N     +P ++   L +L  ID+  N       S
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 297 SIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQI-----FPKYMNLT 351
                 +L  L L KN  +            +L  LD+  N F         F  ++N T
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET 638

Query: 352 QLEFLYLENN 361
                 L ++
Sbjct: 639 HTNIPELSSH 648

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  225 bits (576), Expect = 2e-64
 Identities = 116/528 (21%), Positives = 166/528 (31%), Gaps = 33/528 (6%)

Query: 36  TNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
            + K LDLS   +  L          L+ LDLS   I    E      L +LS  IL G 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGN 86

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
            I+         LS L+ L      L+      I  L +L+ L +  N  +   L    +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 154 NHSKLEVLLLSSRTNMLS-VKTENFLPTFQLKV----LGLPNYNLKVIPSFLLHQYDLKL 208
           N + LE L LSS  N +  +   +     Q+ +    L L    +  I      +  L  
Sbjct: 147 NLTNLEHLDLSS--NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFL--------HHLDV 260
           L L  N    +     ++    LE   L    F     L K     L            +
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 261 SNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPA 320
           +  +       D+   L  +    +     E     S         L L    F    P 
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQ-FPT 321

Query: 321 PLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNK--FSGKIEEGLSNSNELN 378
             L     L      G N + ++     +L  LEFL L  N   F G   +    +  L 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 379 ELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSVSENCLS 437
            LD+S N +   +          L+ L      LK      +     +L  L +S     
Sbjct: 377 YLDLSFNGVIT-MSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 438 GPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESL 495
                 F  LSSLE L +  NS        +F    NL  LDL   +   + P   +   
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 496 TLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIML 543
           +L+ L +  N            L  L VLD S N I  S    L    
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  217 bits (556), Expect = 1e-61
 Identities = 108/530 (20%), Positives = 190/530 (35%), Gaps = 40/530 (7%)

Query: 23  NILFFIVVGFANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVC 80
            I    +  F+ L++L+ L      + +L+   +  LK L+ L++++N I      +   
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 81  ELKNLSEFILRGINIKGHLPDCLKNLSHLKV----LDISYNQLSGTLPSAITTLTSLEYL 136
            L NL    L    I+      L+ L  + +    LD+S N ++   P A   +  L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205

Query: 137 ALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVI 196
            L +N      +   +   + LEV  L     +   + E  L  F    L          
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLV----LGEFRNEGNLEKFDKSALE--------- 252

Query: 197 PSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLH 256
               L    ++   L+  +   D    +    T + +  L + +                
Sbjct: 253 ---GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--WQ 307

Query: 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG 316
           HL++ N            + L+ L  +  + N+  G    S  ++ +L FL L +N  S 
Sbjct: 308 HLELVNCKFGQFPT----LKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 317 -ELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEG-LSNS 374
               +    G  SL  LDLS N     +   ++ L QLE L  +++      E     + 
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 375 NELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL-NHGSLNLLSVSE 433
             L  LDIS+              SS L+VL M+    + N    +     +L  L +S+
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 434 NCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQIS 492
             L     ++F +LSSL+ L +  N+            ++L  LD   N        ++ 
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 493 ESLT-LRFLLLRGNYLEGQIPNQ--LCQLRRLGVLDLSHNRISGSIPSCL 539
              + L FL L  N       +Q  L  ++    L +   R+  + PS  
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  198 bits (506), Expect = 8e-55
 Identities = 111/617 (17%), Positives = 195/617 (31%), Gaps = 107/617 (17%)

Query: 107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
              K LD+S+N L      +  +   L+ L L     +      +  + S L  L+L+  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTG- 85

Query: 167 TNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLR 226
                                  N    +          L+ L     NL        + 
Sbjct: 86  -----------------------NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IG 121

Query: 227 NNTKLEALFLTNNSFTGNLQLPKTKHDF--LHHLDVSNNNLTGKLPEDMGIILQ---KLL 281
           +   L+ L + +N      +LP+   +   L HLD+S+N +      D+ ++ Q     L
Sbjct: 122 HLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 282 YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG 341
            +D+S N      P +  E++ L  L L  N  S  +    + G   L +  L    F  
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 342 Q------IFPKYMNLTQLEFLYLE---NNKFSGKIEEGLSNSNELNELDISNNLLSGHIP 392
           +             L  L          + +   I +  +    ++   + +  +     
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 393 HWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHL 452
               +++   + L +           +L +   L   S           S  +L SLE L
Sbjct: 300 ---FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA----FSEVDLPSLEFL 352

Query: 453 YLQMNSLS--GPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQ 510
            L  N LS  G    + F +++L  LDL  N     +         L  L  + + L+  
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 511 IPNQ-LCQLRRLGVLDLSHNRIS----GSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFV 565
                   LR L  LD+SH        G      ++ +L +AGN +              
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ------------- 458

Query: 566 GSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLT 625
                            N +  IF +L  + F                   LDLS  QL 
Sbjct: 459 ----------------ENFLPDIFTELRNLTF-------------------LDLSQCQLE 483

Query: 626 GGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEL-N 683
              P+    L  ++ LN+S+N         +  L  ++ LD S N +       L    +
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 684 FLSNFNVSFNNLSGLIP 700
            L+  N++ N+ +    
Sbjct: 544 SLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  175 bits (447), Expect = 7e-47
 Identities = 93/557 (16%), Positives = 163/557 (29%), Gaps = 85/557 (15%)

Query: 192 NLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGN-----LQ 246
           N   IP  L      K LDLS N L     ++   +  +L+ L L+              
Sbjct: 18  NFYKIPDNLPF--STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 247 LPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIF 306
           L       L  L ++ N +   L       L  L  +   +          IG +K L  
Sbjct: 75  LSH-----LSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 307 LRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEF----LYLENNK 362
           L +  N           +   +L  LDLS N            L Q+      L L  N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 363 FSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVL------LMSKMFLKGNI 416
            +            L++L + NN  S ++        + L+V         ++  L+   
Sbjct: 189 MNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 417 PAQLLNHGSLNLLSVSENCLS---GPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSN 472
            + L    +L +       L      +   F  L+++    L   ++      +      
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN--FG 305

Query: 473 LITLDLRDNRFSGVIPHQISESLTLRFLLLRGN---------------------YLEGQI 511
              L+L + +F      ++     L F   +G                        +G  
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 512 PNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTY 571
                    L  LDLS N +     + L +  L           +L F  +         
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE----------HLDFQHSNLKQMS--- 412

Query: 572 YNSTFHFGHYGNGVYSIFPQLVKV-----EFMTKNRYELYNGSNIKYMVGLDLSCNQLTG 626
             S F               L+ +                  S+++    L ++ N    
Sbjct: 413 EFSVFLS----------LRNLIYLDISHTHTRVAFNGIFNGLSSLEV---LKMAGNSFQE 459

Query: 627 GIPSEI-GDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNF 684
               +I  +L  +  L+LS   L    P +F++L  ++ L++SHN            LN 
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519

Query: 685 LSNFNVSFNNLSGLIPD 701
           L   + S N++      
Sbjct: 520 LQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 91.6 bits (228), Expect = 2e-19
 Identities = 48/261 (18%), Positives = 82/261 (31%), Gaps = 56/261 (21%)

Query: 19  NNASNILFFIVVGFANLTNLKILDLSGCGITTL---QGLTKLKNLEALDLSYNNISGSSE 75
           + + N +  +   F  L  L+ LD     +  +        L+NL  LD+S+ +   +  
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 76  SQGVCELKNLSEFILRGINIKGHL-PDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLE 134
                 L +L    + G + + +  PD    L +L  LD+S  QL    P+A  +L+SL+
Sbjct: 439 GI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 135 YLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK 194
            L +  NNF                                                   
Sbjct: 498 VLNMSHNNFFS------------------------------------------------- 508

Query: 195 VIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLP--KTKH 252
           +          L++LD S N+++      +    + L  L LT N F    +        
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 568

Query: 253 DFLHHLDVSNNNLTGKLPEDM 273
                L V    +    P D 
Sbjct: 569 KDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 8e-12
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 617 LDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV 675
           LDLS  ++          L  +  L L+ N +     G+FS L  ++ L      L+   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 676 PPRLTELNFLSNFNVSFNNLSGLIPDK 702
              +  L  L   NV+ N +      +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPE 143

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  205 bits (524), Expect = 3e-60
 Identities = 88/313 (28%), Positives = 123/313 (39%), Gaps = 51/313 (16%)

Query: 414 GNIPAQLLNHGSLNLLSVSENCLSGPMTSS---FNLSSLEHLYLQ-MNSLSGPIPIALFR 469
           G +         +N L +S   L  P        NL  L  LY+  +N+L GPIP A+ +
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 470 SSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN 529
            + L  L +     SG IP  +S+  TL  L    N L G +P  +  L  L  +    N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 530 RISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIF 589
           RISG+IP           G+       +        G I                     
Sbjct: 160 RISGAIPDSY--------GSFSKLFTSMTISRNRLTGKI--------------------- 190

Query: 590 PQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLS 648
           P                N +    +  +DLS N L G      G  +  + ++L+ N L+
Sbjct: 191 PP------------TFANLN----LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 649 GSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATF 708
             +       K +  LDL +NR+ G +P  LT+L FL + NVSFNNL G IP  G    F
Sbjct: 235 FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293

Query: 709 DESSYRGNLHLCG 721
           D S+Y  N  LCG
Sbjct: 294 DVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  174 bits (443), Expect = 5e-49
 Identities = 64/257 (24%), Positives = 116/257 (45%), Gaps = 8/257 (3%)

Query: 236 LTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTG--KLPEDMGIILQKLLYIDMSD-NRFEG 292
             N ++ G L    T+   +++LD+S  NL     +P  +   L  L ++ +   N   G
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVG 91

Query: 293 YLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQ 352
            +P +I ++  L +L +   N SG +P   L+   +L  LD S N   G + P   +L  
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 353 LEFLYLENNKFSGKIEEGLSN-SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMF 411
           L  +  + N+ SG I +   + S     + IS N L+G IP    N +  L  + +S+  
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNM 208

Query: 412 LKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSS 471
           L+G+      +  +   + +++N L+  +       +L  L L+ N + G +P  L +  
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 472 NLITLDLRDNRFSGVIP 488
            L +L++  N   G IP
Sbjct: 269 FLHSLNVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  167 bits (425), Expect = 2e-46
 Identities = 69/261 (26%), Positives = 98/261 (37%), Gaps = 29/261 (11%)

Query: 283 IDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL-LTGCISLGLLDLSG-NNFY 340
            D  +  + G L  +  +   +  L L   N     P P  L     L  L + G NN  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 341 GQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSS 400
           G I P    LTQL +LY+ +   SG I + LS    L  LD S N LSG +P  I +  +
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 401 DLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSL-EHLYLQMNSL 459
            L  +      + G IP                           + S L   + +  N L
Sbjct: 151 -LVGITFDGNRISGAIPDSY-----------------------GSFSKLFTSMTISRNRL 186

Query: 460 SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLR 519
           +G IP       NL  +DL  N   G            + + L  N L   +  ++   +
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK 244

Query: 520 RLGVLDLSHNRISGSIPSCLT 540
            L  LDL +NRI G++P  LT
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLT 265

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  162 bits (412), Expect = 1e-44
 Identities = 73/312 (23%), Positives = 113/312 (36%), Gaps = 39/312 (12%)

Query: 95  IKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL-NSLA 153
           IK  L +     S L   D       G L    T    +  L L   N    + + +SLA
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSG 213
           N   L  L +    N L                G        IP  +     L  L ++ 
Sbjct: 74  NLPYLNFLYIGG-INNLV---------------G-------PIPPAIAKLTQLHYLYITH 110

Query: 214 NNLVGDFPTWVLRNNTKLEALFLTNNSFTGNL-----QLPKTKHDFLHHLDVSNNNLTGK 268
            N+ G  P + L     L  L  + N+ +G L      LP      L  +    N ++G 
Sbjct: 111 TNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPN-----LVGITFDGNRISGA 164

Query: 269 LPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCIS 328
           +P+  G   +    + +S NR  G +P +   +  L F+ L +N   G+    L     +
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-VLFGSDKN 222

Query: 329 LGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS 388
              + L+ N+    +  K      L  L L NN+  G + +GL+    L+ L++S N L 
Sbjct: 223 TQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 389 GHIPHWIGNFSS 400
           G IP   GN   
Sbjct: 282 GEIPQ-GGNLQR 292

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  158 bits (401), Expect = 3e-43
 Identities = 70/312 (22%), Positives = 112/312 (35%), Gaps = 58/312 (18%)

Query: 54  LTKLKNLEALDLSYNNISGSSE-SQGVCELKNLSEFILRGIN-IKGHLPDCLKNLSHLKV 111
            T+   +  LDLS  N+         +  L  L+   + GIN + G +P  +  L+ L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 112 LDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLS 171
           L I++  +SG +P  ++ + +L  L    N   GT                         
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT------------------------- 140

Query: 172 VKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKL 231
                                   +P  +    +L  +   GN + G  P      +   
Sbjct: 141 ------------------------LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

Query: 232 EALFLTNNSFTGNLQLPKTKHDF-LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRF 290
            ++ ++ N  TG   +P T  +  L  +D+S N L G      G   +    I ++ N  
Sbjct: 177 TSMTISRNRLTGK--IPPTFANLNLAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSL 233

Query: 291 EGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNL 350
              L   +G  K L  L L  N   G LP   LT    L  L++S NN  G+I P+  NL
Sbjct: 234 AFDLG-KVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGEI-PQGGNL 290

Query: 351 TQLEFLYLENNK 362
            + +     NNK
Sbjct: 291 QRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 88.0 bits (219), Expect = 4e-19
 Identities = 46/201 (22%), Positives = 73/201 (36%), Gaps = 48/201 (23%)

Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRISGS--IPSCLTIMLLWVAGNVYLHEPYLQFFSA 562
               G + +   Q  R+  LDLS   +     IPS L         N+    PYL F   
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL--------ANL----PYLNFLYI 83

Query: 563 IFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCN 622
                               N +    P              +   + + Y   L ++  
Sbjct: 84  -----------------GGINNLVGPIPP------------AIAKLTQLHY---LYITHT 111

Query: 623 QLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTE 681
            ++G IP  +  +  +  L+ SYN LSG++P S S+L  +  +    NR+SG +P     
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 682 LNFLSNF-NVSFNNLSGLIPD 701
            + L     +S N L+G IP 
Sbjct: 172 FSKLFTSMTISRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 470 SSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQ--IPNQLCQLRRLGVLDLS 527
           SS L T D  +  + GV+    +++  +  L L G  L     IP+ L  L  L  L + 
Sbjct: 25  SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84

Query: 528 H-NRISGSIPSCL 539
             N + G IP  +
Sbjct: 85  GINNLVGPIPPAI 97

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 639 GLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQ--VPPRLTELNFLSNFNVS-FNNL 695
             +       G +  + +    + +LDLS   L     +P  L  L +L+   +   NNL
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 696 SGLIPD 701
            G IP 
Sbjct: 90  VGPIPP 95

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  207 bits (528), Expect = 7e-58
 Identities = 101/530 (19%), Positives = 178/530 (33%), Gaps = 43/530 (8%)

Query: 17  LFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSS 74
           L      I +     F +   L  L L+   +  +    L+  K L+ L      IS S 
Sbjct: 64  LTRC--QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SI 120

Query: 75  ESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLE 134
           +   +   K L    L   +I             LKVLD   N +       +++L    
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 135 YLAL-LDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNL 193
            L+L L+ N        +  +     +    ++  ++  K         L +    + + 
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 194 KVIPSFL---LHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKT 250
           + I   +   L +  ++ ++L  +                     +++N+F         
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFN-----------------ISSNTFHCFSG---- 279

Query: 251 KHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLP 310
               L  LD++  +L+ +LP  +   L  L  + +S N+FE     S     +L  L + 
Sbjct: 280 ----LQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333

Query: 311 KNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIE 368
            N    EL    L    +L  LDLS ++            NL+ L+ L L  N+      
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 369 EGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNL 428
           E      +L  LD++   L              LKVL +S   L  +         +L  
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453

Query: 429 LSVSENCLSGPMTSSF----NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFS 484
           L++  N               L  LE L L    LS     A      +  +DL  NR +
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 485 GVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS 534
                 +S  L   +L L  N++   +P+ L  L +   ++L  N +  +
Sbjct: 514 SSSIEALS-HLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  173 bits (441), Expect = 4e-46
 Identities = 97/517 (18%), Positives = 163/517 (31%), Gaps = 49/517 (9%)

Query: 39  KILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKG 97
           K  +    G+  +   L    + E L+ S+N +                           
Sbjct: 15  KTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQ----------------------- 49

Query: 98  HLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSK 157
                   L +L  LD++  Q+         +   L+ L L  N         +L+    
Sbjct: 50  --NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKA 106

Query: 158 LEVLLLSSRTNMLSVKTENFLPTF-QLKVLGLPNYNLKVIPSFLLHQ-YDLKLLDLSGNN 215
           L+ L        +S      L     L+ L L + ++  I          LK+LD   N 
Sbjct: 107 LKHLFFIQ--TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 216 LVGDFPTWVLRNNTKLEALFL--TNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDM 273
           +        + +  +   L L    N   G ++           L+         + + +
Sbjct: 165 IHY-LSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

Query: 274 -GIILQKLLYIDMSDNRFEGYLPSSIGEMKA--LIFLRLPKNNFSGELPAPLLTGCISLG 330
               +Q L      D   E   P+    +    +  + L K+ F   + +        L 
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQ 281

Query: 331 LLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGH 390
            LDL+  +   ++    + L+ L+ L L  NKF    +   SN   L  L I  N     
Sbjct: 282 ELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 391 IPHWIGNFSSDLKVLLMS--KMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLS 447
           +         +L+ L +S   +        QL N   L  L++S N      T +F    
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 448 SLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNY 506
            LE L L    L      + F++   L  L+L  +               L+ L L+GN+
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 507 LEG---QIPNQLCQLRRLGVLDLSHNRISGSIPSCLT 540
                 Q  N L  L RL +L LS   +S       T
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  164 bits (417), Expect = 5e-43
 Identities = 99/535 (18%), Positives = 174/535 (32%), Gaps = 44/535 (8%)

Query: 183 LKVLGLPNYNLKVIPSFLLHQY-DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSF 241
            + L      L  I +    +  +L  LDL+   +         ++  +L+ L LT N  
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPL 93

Query: 242 TGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEM 301
               +   +    L HL      ++  +        + L  + +  N             
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 302 KALIFLRLPKNNFSGELPAPLLTGCISLGLLDLS-GNNFYGQIFPKYMNLTQLEFLYLEN 360
           + L  L    N     L    ++       L L+   N    I P   +    + L    
Sbjct: 153 EKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 361 NKFSGKIEEGLSNSN--ELNELDISNNLLSGHIPHWIGNFS-SDLKVLLMSKMFLKGNIP 417
            +    I +GL NS    L      +       P          ++ + + K +      
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 418 AQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLD 477
                   L  L ++   LS   +    LS+L+ L L  N       I+     +L  L 
Sbjct: 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331

Query: 478 LRDNRFSGVIPHQISESLT-LRFLLLRGNYLE--GQIPNQLCQLRRLGVLDLSHNRISGS 534
           ++ N     +     E+L  LR L L  + +E       QL  L  L  L+LS+N     
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391

Query: 535 IP----SCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFP 590
                  C  + LL +A      +     F          +     +  H  + +     
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQ-------NLHLLKVLNLSH--SLLDISSE 442

Query: 591 QLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ----IRGLNLSYNF 646
           QL                  +++   L+L  N    G   +   LQ    +  L LS+  
Sbjct: 443 QL------------FDGLPALQH---LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 647 LSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD 701
           LS     +F++LK +  +DLSHNRL+      L+ L  +   N++ N++S ++P 
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  162 bits (413), Expect = 2e-42
 Identities = 86/451 (19%), Positives = 158/451 (35%), Gaps = 19/451 (4%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSES--QGVCELKNLSE 87
             N   L+ L L    I++++       + L+ LD   N I   S+     + +  NL  
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-S 183

Query: 88  FILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAI--TTLTSLEYLALLDNNFEG 145
             L G +I   +     + +  + L+    Q    +   +  +T+ SL      D + E 
Sbjct: 184 LNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE- 241

Query: 146 TFLLNSLANHSKLEVLLLS-SRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQY 204
                      ++ V  ++  +    ++ +  F     L+ L L   +L  +PS L+   
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLS 301

Query: 205 DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKH-DFLHHLDVSNN 263
            LK L LS N            N   L  L +  N+    L     ++ + L  LD+S++
Sbjct: 302 TLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 264 NLTGKLPEDMGII-LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL 322
           ++      ++ +  L  L  +++S N        +  E   L  L L       +     
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 323 LTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEE---GLSNSNELNE 379
                 L +L+LS +         +  L  L+ L L+ N F     +    L     L  
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 380 LDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGP 439
           L +S   LS    H   +    +  + +S   L      + L+H     L+++ N +S  
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKM-MNHVDLSHNRLTS-SSIEALSHLKGIYLNLASNHISII 538

Query: 440 MTSSF-NLSSLEHLYLQMNSLSGPIPIALFR 469
           + S    LS    + L+ N L        F 
Sbjct: 539 LPSLLPILSQQRTINLRQNPLDCTCSNIYFL 569

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  159 bits (403), Expect = 4e-41
 Identities = 102/525 (19%), Positives = 165/525 (31%), Gaps = 44/525 (8%)

Query: 192 NLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTG--NLQLPK 249
            L  IP  L +    + L+ S N L              L  L LT              
Sbjct: 23  GLNEIPGTLPN--STECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS 79

Query: 250 TKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRL 309
                L  L ++ N L   + E      + L ++              +   K L  L L
Sbjct: 80  QHR--LDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 310 PKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLE-NNKFSGKIE 368
             N+ S  +  P       L +LD   N  +        +L Q   L L  N      IE
Sbjct: 137 GSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 369 EGLSNSNELNELDISNNLLSGHIPHWIGNFS-SDLKVLLMSKMFLKGNIPAQLLNHGSLN 427
            G  +S     L+         I   + N +   L +     M  +   PA       ++
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 428 L--LSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFS 484
           +  +++ ++      +++F   S L+ L L    LS  +P  L   S L  L L  N+F 
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFE 314

Query: 485 GVIPHQISESLTLRFLLLRGNYLEGQI-PNQLCQLRRLGVLDLSHNRISGSIPSCLTIML 543
            +     S   +L  L ++GN    ++    L  L  L  LDLSH+ I  S    L +  
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL-- 372

Query: 544 LWVAGNVYLHEPYLQF--FSAIFVGSIGTYYN-STFHFGHYGNGVYSIFPQLVKVEFMTK 600
                  +L    L +    ++   +                  +     Q         
Sbjct: 373 ---RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF--TRLKVKDAQSPF------ 421

Query: 601 NRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSI---PGSFS 656
                    N+  +  L+LS + L          L  ++ LNL  N           S  
Sbjct: 422 --------QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

Query: 657 NLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD 701
            L  +E L LS   LS       T L  +++ ++S N L+    +
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  142 bits (360), Expect = 1e-35
 Identities = 92/480 (19%), Positives = 152/480 (31%), Gaps = 65/480 (13%)

Query: 234 LFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGY 293
               N       ++P T  +    L+ S N L           L  L ++D++  +    
Sbjct: 17  YNCENLGLN---EIPGTLPNSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWI 72

Query: 294 LPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQL 353
              +      L  L L  N     +    L+G  +L  L           F    N   L
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 354 EFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLK 413
           E LYL +N  S         + +L  LD  NN +       + +                
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ------------- 178

Query: 414 GNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSS-- 471
                    + SLNL   + N ++G    +F+ +  + L          I   L  S+  
Sbjct: 179 -------ATNLSLNL---NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 472 NLITLDLRDNRFSGVIPHQISE--SLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN 529
           +L      D     + P        +++  + L+ +Y      N       L  LDL+  
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

Query: 530 RISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIF 589
            +S  +PS L        G   L +  L               N    F +      S F
Sbjct: 289 HLS-ELPSGLV-------GLSTLKKLVL-------------SAN---KFENLCQISASNF 324

Query: 590 PQLVKVEFMTKNRYELYNGSNI----KYMVGLDLSCNQLT--GGIPSEIGDL-QIRGLNL 642
           P L  +  +  N   L  G+      + +  LDLS + +        ++ +L  ++ LNL
Sbjct: 325 PSLTHL-SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 643 SYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPR-LTELNFLSNFNVSFNNLSGLIPD 701
           SYN        +F     +E LDL+  RL  +        L+ L   N+S + L      
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  141 bits (358), Expect = 2e-35
 Identities = 70/382 (18%), Positives = 131/382 (34%), Gaps = 36/382 (9%)

Query: 16  WLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLT----KLKNLEALDLSYNNIS 71
                 + ++ F  +  + + +L +          +           ++E+++L  +   
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 72  GSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLT 131
             S +   C    L E  L   ++   LP  L  LS LK L +S N+       + +   
Sbjct: 268 NISSNTFHC-FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 132 SLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNY 191
           SL +L++  N          L N   L  L LS           +      ++     N 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLS----------HD-----DIETSDCCNL 370

Query: 192 NLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNL-QLPKT 250
            L+ +         L+ L+LS N  +    T   +   +LE L L          Q P  
Sbjct: 371 QLRNLSH-------LQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422

Query: 251 KHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGY---LPSSIGEMKALIFL 307
               L  L++S++ L     E +   L  L ++++  N F        +S+  +  L  L
Sbjct: 423 NLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 308 RLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKI 367
            L   + S  +     T    +  +DLS N           +L  + +L L +N  S  +
Sbjct: 482 VLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539

Query: 368 EEGLSNSNELNELDISNNLLSG 389
              L   ++   +++  N L  
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  126 bits (318), Expect = 2e-30
 Identities = 67/397 (16%), Positives = 121/397 (30%), Gaps = 56/397 (14%)

Query: 317 ELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNE 376
           E+P  L     S   L+ S N         +  L  L FL L   +     E+   + + 
Sbjct: 26  EIPGTLPN---STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82

Query: 377 LNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL 436
           L+ L ++ N L       +    + LK L   +  +       L N  +L  L +  N +
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 437 SGPMTSSF-NLSSLEHLYLQMNSLSGPIPIAL--FRSSNLITLDLRDNRFSGVIPHQISE 493
           S            L+ L  Q N++       +   + +  ++L+L  N  +G I     +
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFD 200

Query: 494 SLTLRFLLLRGNYLEGQIPNQL--CQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVY 551
           S   + L   G      I   L    ++ L +            P+              
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE----------- 249

Query: 552 LHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNI 611
                            G    S        +  ++I                 +  S +
Sbjct: 250 -----------------GLCEMSVESINLQKHYFFNISSNT------------FHCFSGL 280

Query: 612 KYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNR 670
           +    LDL+   L+  +PS +  L  ++ L LS N        S SN   +  L +  N 
Sbjct: 281 QE---LDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 671 LSGQVPPR-LTELNFLSNFNVSFNNLSGLIPDKGQFA 706
              ++    L  L  L   ++S +++        Q  
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  122 bits (307), Expect = 5e-29
 Identities = 61/334 (18%), Positives = 105/334 (31%), Gaps = 39/334 (11%)

Query: 378 NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLS 437
              +  N  L+  IP   G   +  + L  S   L            +L  L ++   + 
Sbjct: 15  KTYNCENLGLN-EIP---GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 438 GPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLT 496
                +F +   L+ L L  N L      AL     L  L       S +    +    T
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 497 LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSC------LTIMLLWVAGNV 550
           L  L L  N++      +     +L VLD  +N I              T + L + GN 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN- 189

Query: 551 YLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSN 610
                     + I  G+  +    + +FG   N +  IF  L                S 
Sbjct: 190 --------DIAGIEPGAFDSAVFQSLNFGGTQN-LLVIFKGL--------------KNST 226

Query: 611 IKYMVGLDLSCNQLTG---GIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLS 667
           I+ +                +   + ++ +  +NL  ++       +F     ++ LDL+
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 668 HNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD 701
              LS ++P  L  L+ L    +S N    L   
Sbjct: 287 ATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 96.6 bits (241), Expect = 6e-21
 Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 14/229 (6%)

Query: 17  LFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSS 74
           L ++         +   NL++L+ L+LS     +L+     +   LE LDL++  +    
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 75  ESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGT---LPSAITTLT 131
                  L  L    L    +          L  L+ L++  N          +++ TL 
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476

Query: 132 SLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNY 191
            LE L L   +       ++  +   +  + LS   N L+  +   L   +   L L + 
Sbjct: 477 RLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSH--NRLTSSSIEALSHLKGIYLNLASN 533

Query: 192 NLK-VIPSFLLHQYDLKLLDLSGNNLVGD-----FPTWVLRNNTKLEAL 234
           ++  ++PS L      + ++L  N L        F  W   N  KLE  
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDT 582

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 40/243 (16%), Positives = 78/243 (32%), Gaps = 40/243 (16%)

Query: 475 TLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNR---- 530
           T +  +   +  IP  +  S     L    N L         +L  L  LDL+  +    
Sbjct: 16  TYNCENLGLN-EIPGTLPNSTE--CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 531 ISGSIPSCLTIMLLWVAGN--VYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSI 588
              +  S   +  L +  N  +++ E  L    A+              F     G+ SI
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL----------KHLFFIQ--TGISSI 120

Query: 589 FPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFL 647
                           L+N   ++    L L  N ++     +    + ++ L+   N +
Sbjct: 121 DFIP------------LHNQKTLES---LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 648 SGSIPGSFSNLK--WIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQF 705
                   S+L+     SL+L+ N ++G + P   +     + N        +I    + 
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

Query: 706 ATF 708
           +T 
Sbjct: 225 STI 227

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  207 bits (528), Expect = 8e-58
 Identities = 109/527 (20%), Positives = 168/527 (31%), Gaps = 34/527 (6%)

Query: 36  TNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
           ++ K +DLS   +  L+    +    L+ LDLS   I  + E +    L +LS  IL G 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGN 90

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
            I+   P     L+ L+ L     +L+      I  L +L+ L +  N      L    +
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFLP-----TFQLKVLGLPNYNLKVIPSFLLHQYDLKL 208
           N + L  + LS   N +   T N L            L +    +  I         L  
Sbjct: 151 NLTNLVHVDLSY--NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLH--------HLDV 260
           L L GN    +     L+N   L    L    F     L   +   +            +
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 261 SNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPA 320
           +  N            L  +  + ++    +      + +      L + +     + P 
Sbjct: 269 TYTNDFSDDIVKFHC-LANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK-QFPT 324

Query: 321 PLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSN--ELN 378
             L     L  L L+ N   G I  K + L  L +L L  N  S       S+     L 
Sbjct: 325 LDLP---FLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 379 ELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL-NHGSLNLLSVSENCLS 437
            LD+S N     +          L+ L      LK         +   L  L +S     
Sbjct: 380 HLDLSFNGAI-IMSANFMGLEE-LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 438 GPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESL 495
                 F  L+SL  L +  NS        +F + +NL  LDL   +   +         
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 496 TLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIM 542
            L+ L +  N L     +   QL  L  LD S NRI  S        
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (399), Expect = 1e-40
 Identities = 100/666 (15%), Positives = 179/666 (26%), Gaps = 147/666 (22%)

Query: 41  LDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHL 99
                  ++ +   +    + + +DLS+N +                             
Sbjct: 16  YQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILK------------------------- 48

Query: 100 PDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLE 159
                N S L+ LD+S  ++      A   L  L  L L  N  +  F   S +  + LE
Sbjct: 49  SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLE 107

Query: 160 VLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGD 219
            L+                                +    +     LK L+++ N +   
Sbjct: 108 NLVAVE------------------------TKLASLESFPIGQLITLKKLNVAHNFIHSC 143

Query: 220 FPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQK 279
                  N T L  + L+ N       +      FL                        
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQT---ITVNDLQFLRENPQV------------------ 182

Query: 280 LLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNF 339
            L +DMS N  + ++     +   L  L L  N  S  +    L     L +  L    F
Sbjct: 183 NLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 340 YGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFS 399
             +   +    + +E L                    ++E  ++               +
Sbjct: 242 KDERNLEIFEPSIMEGL----------------CDVTIDEFRLTYTNDFSDDIVKFHCLA 285

Query: 400 SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSL 459
           + +  + ++ + +       +  H     LS+    L      + +L  L+ L L MN  
Sbjct: 286 N-VSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ--FPTLDLPFLKSLTLTMNKG 340

Query: 460 SGPIPIALFRSSNLITLDLRDNRFSGVIPH--QISESLTLRFLLLRGNYLEGQIPNQLCQ 517
           S           +L  LDL  N  S           + +LR L L  N     +      
Sbjct: 341 SISFKKVAL--PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMG 397

Query: 518 LRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFH 577
           L  L  LD  H+ +   +      + L       L    +                    
Sbjct: 398 LEELQHLDFQHSTLK-RVTEFSAFLSLE-----KLLYLDIS------------------- 432

Query: 578 FGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-- 635
                      F  +                +++     L ++ N       S +     
Sbjct: 433 ----YTNTKIDFDGI------------FLGLTSLNT---LKMAGNSFKDNTLSNVFANTT 473

Query: 636 QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNL 695
            +  L+LS   L     G F  L  ++ L++SHN L         +L  LS  + SFN +
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 696 SGLIPD 701
                 
Sbjct: 534 ETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (316), Expect = 4e-30
 Identities = 60/356 (16%), Positives = 107/356 (30%), Gaps = 55/356 (15%)

Query: 9   LEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYN 68
           L   +        +N     +V F  L N+  + L+G  I  L+ + K    ++L +   
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 317

Query: 69  NISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAIT 128
            +                                  +L  LK L ++ N+ S  +     
Sbjct: 318 QLKQFPTL----------------------------DLPFLKSLTLTMNKGS--ISFKKV 347

Query: 129 TLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGL 188
            L SL YL L  N                          +     + + L T  L+ L L
Sbjct: 348 ALPSLSYLDLSRNAL------------------------SFSGCCSYSDLGTNSLRHLDL 383

Query: 189 PNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLP 248
                 ++ +  +   +L+ LD   + L          +  KL  L ++  +   +    
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 249 KTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLR 308
                 L+ L ++ N+       ++      L ++D+S  + E         +  L  L 
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 309 LPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFS 364
           +  NN    L +       SL  LD S N               L F  L NN  +
Sbjct: 504 MSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  207 bits (528), Expect = 1e-57
 Identities = 96/580 (16%), Positives = 186/580 (32%), Gaps = 65/580 (11%)

Query: 30  VGFANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLS- 86
           V   +   +  L L G G +      + +L  LE L L  +    +    G   +     
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 87  --EFILRGINIKGHLPDCLK--NLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNN 142
             +     ++ +    D     + S L    I+ +    ++  +         +  L NN
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 143 FEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLH 202
              TF+  ++   +KL    + +  +      EN    ++ +         K       +
Sbjct: 195 I--TFVSKAVMRLTKLRQFYMGN--SPFV--AENICEAWENENSEY-AQQYKTEDLKWDN 247

Query: 203 QYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF-------- 254
             DL  +++     +   PT+ L+   +++ + +  N      QL               
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 255 LHHLDVSNNNL-TGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNN 313
           +  + +  NNL T  +   +   ++KL  ++   N+ EG    + G    L  L L  N 
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQ 364

Query: 314 FSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM---NLTQLEFLYLENNKFSG----- 365
            +  +PA        +  L  + N       P      +++ +  +    N+        
Sbjct: 365 ITE-IPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 366 --KIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH 423
              ++        ++ +++SNN +S          S       +S + L GN        
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP------LSSINLMGN-------- 467

Query: 424 GSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSG-PIPIALFRSSNLITLDLRDNR 482
               L  + +N L     +  N   L  + L+ N L+             L+ +DL  N 
Sbjct: 468 ---MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524

Query: 483 FSGVIPHQISESLTLRFLLLR------GNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
           FS   P Q   S TL+   +R      GN    + P  +     L  L +  N I     
Sbjct: 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE 583

Query: 537 SCLT-IMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNST 575
                I +L +  N  +          I  G    +Y+ T
Sbjct: 584 KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  204 bits (521), Expect = 9e-57
 Identities = 83/642 (12%), Positives = 178/642 (27%), Gaps = 136/642 (21%)

Query: 81  ELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG----TLPSAITTLTSLEYL 136
               ++   L G    G +PD +  L+ L+VL +  +          P  I+   S E  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 137 ALLDNNFEGTFL-LNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKV 195
             +  +++ TF+  +   + S L    ++S     S+K  + +   +   +G  + N+  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL-KDTQIGQLSNNITF 197

Query: 196 IPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFL 255
           +   ++    L+   +  +  V +            E              L       L
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENIC------EAWENENSEYAQQYKTEDLKWDNLKDL 251

Query: 256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFS 315
             ++V N     KLP  +   L ++  I+++ NR                     +    
Sbjct: 252 TDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGIS----------------GEQLKDD 294

Query: 316 GELPAPLLTGCISLGLLDLSGNNF-YGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNS 374
            +  A        + ++ +  NN     +      + +L  L    N+  GK+     + 
Sbjct: 295 WQALADA-PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSE 352

Query: 375 NELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSEN 434
            +L  L+++ N ++                           IPA                
Sbjct: 353 IKLASLNLAYNQITE--------------------------IPANFCG------------ 374

Query: 435 CLSGPMTSSFNLSSLEHLYLQMNSLSG-PIPIALFRSSNLITLDLRDNRFSGV------- 486
                         +E+L    N L   P        S +  +D   N    V       
Sbjct: 375 ----------FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 487 IPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWV 546
           +     + + +  + L  N +             L  ++L  N ++    + L       
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 547 AGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELY 606
                L    L+                        N +  +                  
Sbjct: 485 KNTYLLTSIDLR-----------------------FNKLTKLSDDF-------------- 507

Query: 607 NGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-------IRGLNLSYNFLSGSIPGSFSNLK 659
             + + Y+VG+DLS N  +   P++  +             +   N      P   +   
Sbjct: 508 RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 660 WIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD 701
            +  L +  N +   V  ++     +S  ++  N    +   
Sbjct: 567 SLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  186 bits (475), Expect = 2e-50
 Identities = 83/564 (14%), Positives = 159/564 (28%), Gaps = 110/564 (19%)

Query: 7   PKLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL-QGLTKLKNLEALDL 65
           P+ +         N+      I            +      IT + + + +L  L    +
Sbjct: 154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYM 213

Query: 66  SYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPS 125
             +          +CE                       NL  L  +++        LP+
Sbjct: 214 GNSPFVAE----NICEAWENEN--SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

Query: 126 AITTLTSLEYLALLDNNFEGT-------FLLNSLANHSKLEVLLLSSRTNMLSVKTENFL 178
            +  L  ++ + +  N              L       K++++ +            N L
Sbjct: 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY----------NNL 317

Query: 179 PTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTN 238
            TF              + + L     L +L+   N L G  P     +  KL +L L  
Sbjct: 318 KTFP-------------VETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAY 362

Query: 239 NSFTGNLQLPKT---KHDFLHHLDVSNNNLTGKLPEDMGII-LQKLLYIDMSDNRFEGY- 293
           N  T    +P       + + +L  ++N L   +P       +  +  ID S N      
Sbjct: 363 NQITE---IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVD 418

Query: 294 ------LPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNF-------Y 340
                 L  +  +   +  + L  N  S   P  L +    L  ++L GN          
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSL 477

Query: 341 GQIFPKYMNLTQLEFLYLENNKFSGKIEE-GLSNSNELNELDISNNLLSGHIPHWIGNFS 399
                 + N   L  + L  NK +   ++   +    L  +D+S N  S           
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK---------- 527

Query: 400 SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSL 459
                            P Q LN  +L    +                       Q N  
Sbjct: 528 ----------------FPTQPLNSSTLKGFGIRNQ-----------------RDAQGNRT 554

Query: 460 SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLR 519
               P  +    +L  L +  N     +  +I+ +++   L ++ N       + +C   
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNIS--VLDIKDNPNISIDLSYVCPYI 611

Query: 520 RLGVLDLSHNRISGSIPSCLTIML 543
             G+  L +++    I  C  + +
Sbjct: 612 EAGMYMLFYDKTQ-DIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (267), Expect = 5e-24
 Identities = 49/382 (12%), Positives = 108/382 (28%), Gaps = 64/382 (16%)

Query: 332 LDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI 391
           L+    +  G       N    +    E + +  +    L+++  +  L +     SG +
Sbjct: 42  LNGKNWSQQGFGTQPGANWNFNK----ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV 97

Query: 392 PHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEH 451
           P  IG  +  L+VL +     K N                                S E 
Sbjct: 98  PDAIGQLTE-LEVLALGSHGEKVNERLFGPK-------------------GISANMSDEQ 137

Query: 452 LYLQMNSLSGPIPIALFR--SSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEG 509
                            R   S+LI   +  +     I      +L    +    N +  
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 510 QIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIG 569
            +   + +L +L    + ++                     Y  E               
Sbjct: 198 -VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED----------LKWD 246

Query: 570 TYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGG-- 627
              + T     Y     +  P              L     ++    ++++CN+   G  
Sbjct: 247 NLKDLT-DVEVYNCPNLTKLPT------------FLKALPEMQL---INVACNRGISGEQ 290

Query: 628 ------IPSEIGDLQ-IRGLNLSYN-FLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRL 679
                   ++    + I+ + + YN   +  +  S   +K +  L+  +N+L G   P  
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAF 349

Query: 680 TELNFLSNFNVSFNNLSGLIPD 701
                L++ N+++N ++ +  +
Sbjct: 350 GSEIKLASLNLAYNQITEIPAN 371

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.5 bits (238), Expect = 2e-20
 Identities = 35/302 (11%), Positives = 78/302 (25%), Gaps = 56/302 (18%)

Query: 423 HGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNR 482
             + N     +   + P  S  +   +  L L+    SG +P A+ + + L  L L  + 
Sbjct: 57  GANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG 116

Query: 483 FSG----VIPHQISESLTLRFLLLRGNYLEGQIPNQL--CQLRRLGVLDLSHNRISGSIP 536
                    P  IS +++         + +    +         L    ++ +    SI 
Sbjct: 117 EKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176

Query: 537 SCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVE 596
               I L                                   G   N +  +   +    
Sbjct: 177 KSSRITLKDT------------------------------QIGQLSNNITFVSKAV---- 202

Query: 597 FMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFS 656
                         +  +    +  +        E  +      N  Y     +    + 
Sbjct: 203 ------------MRLTKLRQFYMGNSPFVAENICEAWEN----ENSEYAQQYKTEDLKWD 246

Query: 657 NLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGN 716
           NLK +  +++ +     ++P  L  L  +   NV+ N        K  +    ++     
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 717 LH 718
           + 
Sbjct: 307 IQ 308

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 8e-07
 Identities = 18/107 (16%), Positives = 45/107 (42%), Gaps = 11/107 (10%)

Query: 608 GSNIKYMVGLDLSCNQLTGGIPS--EIGDL-QIRGLNLSYNFLSG-------SIPGSFSN 657
               + +  L  + N+L   IP+  +   +  +  ++ SYN +          +  +   
Sbjct: 373 CGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 658 LKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQ 704
              + S++LS+N++S       +  + LS+ N+  N L+ +  +  +
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  207 bits (528), Expect = 2e-56
 Identities = 96/577 (16%), Positives = 179/577 (31%), Gaps = 63/577 (10%)

Query: 30  VGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSE 87
           V   N   +  L L+G G        + +L  L+ L    ++ + S    G  EL     
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 88  FILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG---TLPSAITTLTSLEYLALLDNNFE 144
              +      +    L     L + D+  + ++      P    +  SL+   + +    
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 145 GTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQY 204
            TF+  ++   +KL+++  ++  +     T + +               +       +  
Sbjct: 437 ITFISKAIQRLTKLQIIYFAN--SPF---TYDNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 205 DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF---------L 255
           DL  ++L     +   P   L +  +L++L +  N      QL                +
Sbjct: 492 DLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 256 HHLDVSNNNLTGKLPEDMGII-LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF 314
               +  NNL    P    +  + KL  +D   N+       + G    L  L+L  N  
Sbjct: 551 QIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQI 607

Query: 315 SGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM---NLTQLEFLYLENNKFSGKIEEGL 371
             E+P         +  L  S N       P      ++  +  +    NK   +     
Sbjct: 608 E-EIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 372 SNSNELN-----ELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSL 426
            + ++        + +S N +           S  +  +++S      N           
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSP-ISTIILS-----NN----------- 707

Query: 427 NLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSG-PIPIALFRSSNLITLDLRDNRFSG 485
            + S+ EN L     +  N   L  + L+ N L+             L  +D+  N FS 
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 486 VIPHQISESLTLRFLLLR------GNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCL 539
             P Q   S  L+   +R      GN +  Q P  +     L  L +  N I   +   L
Sbjct: 768 -FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL 825

Query: 540 TIML--LWVAGNVYLHEPYLQFFSAIFVGSIGTYYNS 574
           T  L  L +A N  +          I  G     Y+ 
Sbjct: 826 TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  188 bits (480), Expect = 4e-50
 Identities = 81/507 (15%), Positives = 169/507 (33%), Gaps = 49/507 (9%)

Query: 69  NISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAIT 128
           ++ G      +     ++   L G   KG +PD +  L+ LKVL    +  + +      
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 129 TLTSLEYLALLDNNFEGTFLLNSLANHSKLEVL-----LLSSRTNMLSVKTENFLPTFQL 183
              + +      +     +    L    +L +       ++    M  +K ++ +     
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 184 KVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFT- 242
           ++  L N  +  I   +     L+++  + +    D       +     A    N   + 
Sbjct: 429 QIGNLTN-RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 243 GNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGY--------- 293
            NL+        L  +++ N     +LP+ +   L +L  ++++ NR             
Sbjct: 488 SNLKD-------LTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTR 539

Query: 294 LPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQL 353
           L         +    +  NN      +  L   + LGLLD   N    +    +    +L
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKL 597

Query: 354 EFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFS-SDLKVLLMSKMFL 412
             L L+ N+     E+  + ++++  L  S+N L   IP+     S   +  +  S   +
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKI 656

Query: 413 KGNIPAQLLNHGSLNL-----LSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLS------ 460
                    +           +++S N +    T  F   S +  + L  N ++      
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716

Query: 461 -GPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNYLEGQIPNQLCQL 518
             P       +  L T+DLR N+ + +     + +L  L  + +  N      P Q    
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS 775

Query: 519 RRLGVLDLSH------NRISGSIPSCL 539
            +L    + H      NRI    P+ +
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGI 802

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  185 bits (472), Expect = 4e-49
 Identities = 78/632 (12%), Positives = 167/632 (26%), Gaps = 126/632 (19%)

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
                    L N   +  L ++     G +P AI  LT L+ L+   ++   T       
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE--TVSGRLFG 367

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSG 213
           +      +    +  +     + FL   Q                       L L DL  
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQR----------------------LNLSDLLQ 405

Query: 214 NNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQ-LPKT--KHDFLHHLDVSNNNLTGKLP 270
           + +  +     ++ ++++        + T  +  + K   +   L  +  +N+  T    
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 271 EDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLG 330
                        +    +       S   +K L  + L       +LP   L     L 
Sbjct: 466 A------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQ 518

Query: 331 LLDLSGNNFYG---------QIFPKYMNLTQLEFLYLENNKFSG-KIEEGLSNSNELNEL 380
            L+++ N             ++        +++  Y+  N          L    +L  L
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 381 DISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSG-P 439
           D  +N +  H+    G                             L  L +  N +   P
Sbjct: 579 DCVHNKVR-HLEA-FGTNVK-------------------------LTDLKLDYNQIEEIP 611

Query: 440 MTSSFNLSSLEHLYLQMNSLSG-PIPIALFRSSNLITLDLRDNRFSGVIPH-----QISE 493
                    +E L    N L   P          + ++D   N+      +        +
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 494 SLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLH 553
            +    + L  N ++            +  + LS+N ++    + L            L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 554 EPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKY 613
              L+F                       N + S+                    + + Y
Sbjct: 732 TIDLRF-----------------------NKLTSLSDDF--------------RATTLPY 754

Query: 614 MVGLDLSCNQLTGGIPSEIGDLQ-------IRGLNLSYNFLSGSIPGSFSNLKWIESLDL 666
           +  +D+S N  +   P++  +             +   N +    P   +    +  L +
Sbjct: 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 667 SHNRLSGQVPPRLTELNFLSNFNVSFNNLSGL 698
             N +   V  +L     L   +++ N    +
Sbjct: 814 GSNDIRK-VDEKL--TPQLYILDIADNPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  171 bits (436), Expect = 1e-44
 Identities = 69/518 (13%), Positives = 148/518 (28%), Gaps = 86/518 (16%)

Query: 17  LFNNASNILFFIVVGFANLTNLKILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSE 75
             N    +         +L + +I +L+   IT + + + +L  L+ +  + +  +  + 
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 76  SQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEY 135
           +       +  +          +      NL  L  +++        LP  +  L  L+ 
Sbjct: 466 AV------DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 136 LALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKV 195
           L +  N       L +                                        +   
Sbjct: 520 LNIACNRGISAAQLKA----------------------------------------DWTR 539

Query: 196 IPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFT-----GNLQLPKT 250
           +         +++  +  NNL     +  L+   KL  L   +N        G       
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK--- 596

Query: 251 KHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPS--SIGEMKALIFLR 308
               L  L +  N +   +PED      ++  +  S N+ +  +P+  +   +  +  + 
Sbjct: 597 ----LTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVD 650

Query: 309 LPKNNFSGELP----APLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFS 364
              N    E      +      I+   + LS N         +   + +  + L NN  +
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 365 -------GKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIP 417
                     +    N+  L  +D+  N L+     +       L  + +S        P
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FP 769

Query: 418 AQLLNHGSLNLLSVSE------NCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS 470
            Q LN   L    +        N +     +      SL  L +  N +   +   L   
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLT-- 826

Query: 471 SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLE 508
             L  LD+ DN    +    +   +     +L  +  +
Sbjct: 827 PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  151 bits (382), Expect = 6e-38
 Identities = 77/435 (17%), Positives = 136/435 (31%), Gaps = 61/435 (14%)

Query: 3   TSVGPKLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL--QGLTKLKNL 60
           T     ++       +           + ++NL +L  ++L  C   T     L  L  L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYEN---EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517

Query: 61  EALDLSYNNISGSSESQG--------VCELKNLSEFILRGINIKG-HLPDCLKNLSHLKV 111
           ++L+++ N    +++ +               +  F +   N++       L+ +  L +
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 112 LDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLS 171
           LD  +N++      A  T   L  L L  N  E     +  A   ++E L  S   N L 
Sbjct: 578 LDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH--NKLK 632

Query: 172 V--KTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYD------LKLLDLSGNNLVGDFPTW 223
                 N    + +  +      +      +    D         + LS N +   FPT 
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTE 691

Query: 224 VLRNNTKLEALFLTNNSFT-------GNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGII 276
           +    + +  + L+NN  T                   L  +D+  N LT  L +D    
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRAT 750

Query: 277 -LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLS 335
            L  L  +D+S N F    P+       L    +                       D  
Sbjct: 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ-------------------RDAE 790

Query: 336 GNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNN-LLSGHIPHW 394
           GN    Q          L  L + +N      E+       L  LDI++N  +S  +   
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ---LYILDIADNPNISIDVTSV 847

Query: 395 IGNFSSDLKVLLMSK 409
                + + VLL  K
Sbjct: 848 CPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  147 bits (373), Expect = 9e-37
 Identities = 71/506 (14%), Positives = 155/506 (30%), Gaps = 74/506 (14%)

Query: 232 EALFLTNNSFTGNLQLPKTKH---DFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDN 288
           EAL   N  +              +F   LD+  +     L         ++  + ++  
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-----NGRVTGLSLAGF 333

Query: 289 RFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM 348
             +G +P +IG++  L  L    ++ +           ++  + +   +         ++
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392

Query: 349 -NLTQLEFLYLENNKFS-----GKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDL 402
               +L    L  +  +       I++    S +  ++    N ++  I   I   +  L
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTK-L 450

Query: 403 KVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSG 461
           +++  +      +  A           +            S+ NL  L  + L       
Sbjct: 451 QIIYFANSPFTYDNIAV-----DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 462 PIPIALFRSSNLITLDLRDNRFSGV---------IPHQISESLTLRFLLLRGNYLEG-QI 511
            +P  L+    L +L++  NR             +         ++   +  N LE    
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565

Query: 512 PNQLCQLRRLGVLDLSHNRISG--SIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIG 569
              L ++ +LG+LD  HN++    +  + + +  L +  N             I      
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN---------QIEEIPE-DFC 615

Query: 570 TYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIP 629
            + +     G   N +  I                  N  ++  M  +D S N++     
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIF--------------NAKSVYVMGSVDFSYNKIGS-EG 660

Query: 630 SEIGD-------LQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLS-------GQV 675
             I         +    + LSYN +       F+    I ++ LS+N ++          
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 676 PPRLTELNFLSNFNVSFNNLSGLIPD 701
                    L+  ++ FN L+ L  D
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTSLSDD 746

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.8 bits (233), Expect = 9e-20
 Identities = 39/268 (14%), Positives = 77/268 (28%), Gaps = 46/268 (17%)

Query: 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
           N   +  L L      G +P A+ + + L  L    +  +        E LT      R 
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 505 NYLEGQIPN-QLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAI 563
           + +        L   +RL + DL  + I+ +                       +     
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRN----------------------PEMKPIK 418

Query: 564 FVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQ 623
               I          G+  N +  I   +                  +  +  +  + + 
Sbjct: 419 KDSRISLKDT---QIGNLTNRITFISKAI----------------QRLTKLQIIYFANSP 459

Query: 624 LTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELN 683
            T    +    +     N  Y     +   S+SNLK +  ++L +     Q+P  L +L 
Sbjct: 460 FTYDNIA----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515

Query: 684 FLSNFNVSFNNLSGLIPDKGQFATFDES 711
            L + N++ N        K  +    + 
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADD 543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  186 bits (474), Expect = 2e-49
 Identities = 105/523 (20%), Positives = 179/523 (34%), Gaps = 47/523 (8%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
              L   + L LS   I T+       L+ L+ L+L       + + +    L NL    
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTL--PSAITTLTSLEYLALLDNNFEGTF 147
           L    I    PD  + L HL  L + +  LS  +        L +L  L L  N     +
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 148 LLNSLANHSKLEVLLLSS-RTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSF------- 199
           L  S    + L+ +  SS +  ++       L    L    L   +L    S        
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 200 LLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLD 259
                 L++LD+SGN    D         +K +A  L                  +    
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH-------------HIMGAG 246

Query: 260 VSNNNLTGKLPEDM--GIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGE 317
              +N+     ++   G+    + ++D+S              +K L  L L  N  + +
Sbjct: 247 FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-K 304

Query: 318 LPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNEL 377
           +      G  +L +L+LS N         +  L ++ ++ L+ N  +   ++      +L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

Query: 378 NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLS 437
             LD+ +N L+  I          +  + +S   L   +P   L   + NL+ +SEN L 
Sbjct: 365 QTLDLRDNALT-TIHFI-----PSIPDIFLSGNKLV-TLPKINL---TANLIHLSENRLE 414

Query: 438 GPMTSSF--NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISES 494
                 F   +  L+ L L  N  S            +L  L L +N        ++   
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 495 L-----TLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS 532
           +      L+ L L  NYL    P     L  L  L L+ NR++
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  143 bits (361), Expect = 3e-35
 Identities = 104/549 (18%), Positives = 184/549 (33%), Gaps = 53/549 (9%)

Query: 32  FANLTNLKILDLSGCGITTLQ----GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSE 87
           F  L +L  L L  CG++           LK L  LDLS N I          +L +L  
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152

Query: 88  FILRGINIKGHLPDCLKNLS--HLKVLDISYNQLSGTLPSAITTL------TSLEYLALL 139
                  I       L+ L    L    ++ N L   +               LE L + 
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212

Query: 140 DNNFEGTFLLNSLANHSKLEVLLLSSRTN------------MLSVKTENFLPTFQLKVLG 187
            N +      N     SK +   L    +                 T   L    ++ L 
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272

Query: 188 LPNYNLKVIPSFLL-HQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQ 246
           L +  +  + S +     DLK+L+L+ N +              L+ L L+ N      +
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLG---E 328

Query: 247 LPKTKHDFLH---HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKA 303
           L  +    L    ++D+  N++   + +     L+KL  +D+ DN       ++I  + +
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPS 382

Query: 304 LIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG-QIFPKYMNLTQLEFLYLENNK 362
           +  + L  N         L    ++  L+ LS N      I    + +  L+ L L  N+
Sbjct: 383 IPDIFLSGNKLVT-----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437

Query: 363 FSGKIEEGL-SNSNELNELDISNNLLSGHIPHWI--GNFS--SDLKVLLMSKMFLKGNIP 417
           FS    +   S +  L +L +  N+L       +    F   S L+VL ++  +L    P
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497

Query: 418 AQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLD 477
               +  +L  LS++ N L+  ++ +   ++LE L +  N L  P P       +L  LD
Sbjct: 498 GVFSHLTALRGLSLNSNRLTV-LSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLD 553

Query: 478 LRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
           +  N+F          +      +                   + +  LS          
Sbjct: 554 ITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVL 613

Query: 538 CLTIMLLWV 546
                 L++
Sbjct: 614 KSLKFSLFI 622

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  142 bits (359), Expect = 4e-35
 Identities = 119/722 (16%), Positives = 224/722 (31%), Gaps = 131/722 (18%)

Query: 104 KNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLL 163
           + L+  + L +S+N +     S+   L  L+ L L       T    +  N   L +L L
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 164 SSRTNMLSVKTENFLPTFQLKVLGLPN---YNLKVIPSFLLHQYDLKLLDLSGNNLVGDF 220
            S + +  +  + F   F L  L L      +  +   +  +   L  LDLS N +   +
Sbjct: 81  GS-SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 221 PTWVLRNNTKLEALFLTNNSFTG-------NLQLPKTKHDFLHHLDVSNNNLTGKLPEDM 273
                     L+++  ++N            LQ        L    ++ N+L  ++  D 
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT-----LSFFSLAANSLYSRVSVDW 194

Query: 274 GIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLD 333
           G  +     +                    L  L +  N ++ ++               
Sbjct: 195 GKCMNPFRNMV-------------------LEILDVSGNGWTVDITGNFSNAISKSQAFS 235

Query: 334 LSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPH 393
           L   +        + N+   +               GL+ S+ +  LD+S+  +   +  
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFA----------GLARSS-VRHLDLSHGFVF-SLN- 282

Query: 394 WIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHL 452
                                           L +L+++ N ++     +F  L +L+ L
Sbjct: 283 -----------------------SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 453 YLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIP 512
            L  N L        +    +  +DL+ N  + +          L+ L LR N L     
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL----- 374

Query: 513 NQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYY 572
             +  +  +  + LS N++       LT  L+ ++ N   +   L F             
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL---------LRV 425

Query: 573 NSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEI 632
                     N   S                      +++    L L  N L     +E+
Sbjct: 426 PHLQILILNQNRFSSCSGDQT-----------PSENPSLEQ---LFLGENMLQLAWETEL 471

Query: 633 GDLQIRG------LNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLS----GQVPPRLTEL 682
                 G      L L++N+L+   PG FS+L  +  L L+ NRL+      +P  L  L
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL 531

Query: 683 N---------------FLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKS 727
           +                LS  +++ N          + +TF       N+ + GP  +  
Sbjct: 532 DISRNQLLAPNPDVFVSLSVLDITHNKFICEC----ELSTFINWLNHTNVTIAGPPADIY 587

Query: 728 CNSTEEVPAT--TSIQGEVEDECAIDTVSLYWSFGASYVTVILGLFAILWINSNWRRQWF 785
           C   +        S+  E  DE  +     +  F    VT+ L L  IL +       + 
Sbjct: 588 CVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFI 647

Query: 786 YF 787
            +
Sbjct: 648 CY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  138 bits (348), Expect = 1e-33
 Identities = 93/535 (17%), Positives = 178/535 (33%), Gaps = 53/535 (9%)

Query: 204 YDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNN 263
           +D ++      NL     T V +     E L L+ N             + L  L++ + 
Sbjct: 4   FDGRIAFYRFCNL-----TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 264 NLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGE-LPAPL 322
                + ++    L  L  +D+  ++     P +   +  L  LRL     S   L    
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 323 LTGCISLGLLDLSGNNFYGQIFPKYM-NLTQLEFLYLENNKFSGKIEEGLSN--SNELNE 379
                +L  LDLS N             L  L+ +   +N+     E  L       L+ 
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 380 LDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGN-----------------IPAQLLN 422
             ++ N L   +    G   +  + +++  + + GN                     L+ 
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 423 HGSLNLLSVSENCLSGPMTSSF---NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDL 478
              +       + +  P  ++F     SS+ HL L    +   +   +F +  +L  L+L
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNL 297

Query: 479 RDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSC 538
             N+ + +          L+ L L  N L     +    L ++  +DL  N I+  I   
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQ 356

Query: 539 LTIML-----LWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLV 593
               L     L +  N      ++     IF+   G    +        N ++    +L 
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLS--GNKLVTLPKINLTANLIHLSENRL- 413

Query: 594 KVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEI--GDLQIRGLNLSYNFLSGSI 651
                 +N   LY    + ++  L L+ N+ +     +    +  +  L L  N L  + 
Sbjct: 414 ------ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467

Query: 652 -----PGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD 701
                   F  L  ++ L L+HN L+   P   + L  L   +++ N L+ L  +
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  117 bits (295), Expect = 3e-27
 Identities = 78/419 (18%), Positives = 142/419 (33%), Gaps = 65/419 (15%)

Query: 9   LEQRSNKWLFNNASNILFFIVVGFANLTN------LKILDLSGCGITTL----------- 51
           L+ ++  +    A+++   + V +    N      L+ILD+SG G T             
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230

Query: 52  ---QGLTKLKNLEALDLSYNNISGSSES--QGVCELKNLSEFILRGINIKGHLPDCLKNL 106
                L    ++      ++NI    ++   G+    ++    L    +        + L
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS-SVRHLDLSHGFVFSLNSRVFETL 289

Query: 107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
             LKVL+++YN+++     A   L +L+ L L  N        ++     K+  + L   
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQK- 347

Query: 167 TNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLR 226
            N +++  +            L                 L+ LDL  N L        + 
Sbjct: 348 -NHIAIIQDQTFK-------FLEK---------------LQTLDLRDNALT------TIH 378

Query: 227 NNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMS 286
               +  +FL+ N            +   + + +S N L         + +  L  + ++
Sbjct: 379 FIPSIPDIFLSGNKLVT----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 287 DNRFEGYLPSSI-GEMKALIFLRLPKNNFSG----ELPAPLLTGCISLGLLDLSGNNFYG 341
            NRF          E  +L  L L +N        EL   +  G   L +L L+ N    
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

Query: 342 QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSS 400
                + +LT L  L L +N+ +      L  +  L  LDIS N L    P    + S 
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLLAPNPDVFVSLSV 551

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  164 bits (418), Expect = 2e-43
 Identities = 112/523 (21%), Positives = 167/523 (31%), Gaps = 35/523 (6%)

Query: 36  TNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
            + K LDLS   +  L          L+ LDLS   I  + E      L +LS  IL G 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
            I+         LS L+ L      L+      I  L +L+ L +  N  +   L    +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 154 NHSKLEVLLLSSRTNML-SVKTENFLPTFQLKV----LGLPNYNLKVIPSFLLHQYDLKL 208
           N + LE L LSS  N + S+   +     Q+ +    L L    +  I      +  L  
Sbjct: 147 NLTNLEHLDLSS--NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFL--------HHLDV 260
           L L  N    +     ++    LE   L    F     L K     L            +
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 261 SNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSI-GEMKALIFLRLPKNNFSGELP 319
           +  +       D+   L  +    +     E     S     + L  +      F     
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 320 APLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNK--FSGKIEEGLSNSNEL 377
             L         L  + N   G      ++L  LEFL L  N   F G   +    +  L
Sbjct: 325 KSLKR-------LTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 378 NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSVSENCL 436
             LD+S N +   +          L+ L      LK      +     +L  L +S    
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 437 SGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISES 494
                  F  LSSLE L +  NS        +F    NL  LDL   +   + P   +  
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 495 LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
            +L+ L +  N L+        +L  L  + L  N    S P 
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (286), Expect = 2e-26
 Identities = 92/528 (17%), Positives = 159/528 (30%), Gaps = 75/528 (14%)

Query: 192 NLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKT- 250
           N   IP  L      K LDLS N L     ++   +  +L+ L L+         +    
Sbjct: 18  NFYKIPDNLPF--STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIEDGA 71

Query: 251 --KHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLR 308
                 L  L ++ N +   L       L  L  +   +          IG +K L  L 
Sbjct: 72  YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 309 LPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEF----LYLENNKFS 364
           +  N           +   +L  LDLS N            L Q+      L L  N  +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 365 GKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHG 424
             I+ G      L++L + NN  S ++        + L+V  +     +     +  +  
Sbjct: 191 -FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 425 SLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRF 483
           +L  L                  ++E   L          I LF   +N+ +  L     
Sbjct: 250 ALEGLC---------------NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 484 SGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP--SCLTI 541
             V     S +   + L L           +L  L+RL     + N+   +       ++
Sbjct: 295 ERVKDF--SYNFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGNAFSEVDLPSL 349

Query: 542 MLLWVAGN--VYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMT 599
             L ++ N   +        F    +  +   +N           + S F  L ++E   
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-------VITMSSNFLGLEQLEH-- 400

Query: 600 KNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL--QIRGLNLSYNFLSGSIPGSFSN 657
                            LD   + L       +      +  L++S+     +  G F+ 
Sbjct: 401 -----------------LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 658 LKWIESLDLSHNRLSGQVPPR----LTELNFLSNFNVSFNNLSGLIPD 701
           L  +E L ++ N       P     L  L FL   ++S   L  L P 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFL---DLSQCQLEQLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  113 bits (284), Expect = 3e-26
 Identities = 70/373 (18%), Positives = 126/373 (33%), Gaps = 32/373 (8%)

Query: 32  FANLTNLKI----LDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLS 86
              L  + +    LDLS   +  +Q G  K   L  L L  N  S +     +  L  L 
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 87  EFILRGINIKGH------LPDCLKNLSHLKV--LDISYNQLSGT-LPSAITTLTSLEYLA 137
              L     +            L+ L +L +    ++Y       +      LT++   +
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP 197
           L+    E    +   + +   + L L +            L    LK L   +       
Sbjct: 289 LVSVTIER---VKDFSYNFGWQHLELVN----CKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

Query: 198 SFLLHQYDLKLLDLSGNNL-VGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKT--KHDF 254
           S +     L+ LDLS N L      +      T L+ L L+ N       +       + 
Sbjct: 342 SEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLGLEQ 397

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF 314
           L HLD  ++NL       + + L+ L+Y+D+S              + +L  L++  N+F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 315 SGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEGLS 372
                  + T   +L  LDLS      +        +L+ L+ L + +N+     +    
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

Query: 373 NSNELNELDISNN 385
               L ++ +  N
Sbjct: 516 RLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.9 bits (187), Expect = 2e-14
 Identities = 47/209 (22%), Positives = 77/209 (36%), Gaps = 33/209 (15%)

Query: 32  FANLTNLKILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
               T+LK LDLS  G+ T+      L+ LE LD  ++N+   SE      L+NL    +
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPS-AITTLTSLEYLALLDNNFEGTFLL 149
              + +         LS L+VL ++ N           T L +L +L L     E     
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 487

Query: 150 NSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLL 209
            +  + S L+VL ++S  N L                 +P+     + S       L+ +
Sbjct: 488 TAFNSLSSLQVLNMAS--NQLKS---------------VPDGIFDRLTS-------LQKI 523

Query: 210 DLSGNNLVGD------FPTWVLRNNTKLE 232
            L  N              W+ +N+ K +
Sbjct: 524 WLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 552

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 617 LDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV 675
           LDLS  ++          L  +  L L+ N +     G+FS L  ++ L      L+   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 676 PPRLTELNFLSNFNVSFNNLSGLIPDK 702
              +  L  L   NV+ N +      +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPE 143

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (374), Expect = 9e-38
 Identities = 84/462 (18%), Positives = 155/462 (33%), Gaps = 32/462 (6%)

Query: 32  FANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           F +L +L+ LDLS   +++L       L +L+ L+L  N       +     L NL    
Sbjct: 70  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

Query: 90  LRGINIKGHLP-DCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
           +  +     +       L+ L  L+I    L      ++ ++  + +L L  +      L
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLL 188

Query: 149 LNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKL 208
                  S +  L L                   +  +  P   L    S L  +   +L
Sbjct: 189 EIFADILSSVRYLELRDTNL-----ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGK 268
           L L    L  +       + T         +      +L K +   +  L +    L   
Sbjct: 244 LKLLRYIL--ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-Y 300

Query: 269 LPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAP--LLTGC 326
               +  +L+K+  I + +++      S    +K+L FL L +N    E           
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 327 ISLGLLDLSGNNF-----YGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELD 381
            SL  L LS N+       G+I    + L  L  L +  N F   + +      ++  L+
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEIL---LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416

Query: 382 ISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMT 441
           +S+  +   +        + L+VL +S   L  +    L     L  L +S N L   + 
Sbjct: 417 LSSTGIR-VVKT--CIPQT-LEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLKT-LP 467

Query: 442 SSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRF 483
            +     L  + +  N L         R ++L  + L  N +
Sbjct: 468 DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  140 bits (355), Expect = 3e-35
 Identities = 98/529 (18%), Positives = 186/529 (35%), Gaps = 45/529 (8%)

Query: 38  LKILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIK 96
             + D      T++  GL     +++LDLS+N I+       +    NL   IL+   I 
Sbjct: 7   SGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN 63

Query: 97  GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHS 156
               D   +L  L+ LD+S N LS    S    L+SL+YL L+ N ++   + +   N +
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 157 KLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQ-YDLKLLDLSGNN 215
            L+ L + +      ++  +F     L  L +   +L+   S  L    D+  L L  + 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 216 LVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGI 275
                        + +  L L + +       P    +    +       +    E    
Sbjct: 184 S-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 276 ILQ------KLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISL 329
           +L+      +L  ++  D    G           L      +++   EL        +++
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNG-----------LGDFNPSESDVVSELG---KVETVTI 288

Query: 330 GLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSG 389
             L +     +  +   Y  L +++ + +EN+K          +   L  LD+S NL+  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 390 HIPHWIGNFS--SDLKVLLMSKMFLK--GNIPAQLLNHGSLNLLSVSENCLSGPMTSSFN 445
                         L+ L++S+  L+        LL   +L  L +S N       S   
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW 408

Query: 446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLT-LRFLLLRG 504
              +  L L    +   +   +     L  LD+ +N          S  L  L+ L +  
Sbjct: 409 PEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLD-----SFSLFLPRLQELYISR 460

Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRIS----GSIPSCLTIMLLWVAGN 549
           N L+  +P+       L V+ +S N++     G      ++  +W+  N
Sbjct: 461 NKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (295), Expect = 1e-27
 Identities = 94/589 (15%), Positives = 189/589 (32%), Gaps = 104/589 (17%)

Query: 105 NLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLS 164
           +     V D      + ++PS +    +++ L L  N          L   + L+VL+L 
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILK 58

Query: 165 SRTNMLS-VKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQ-YDLKLLDLSGNNLVGDFPT 222
           S  + ++ ++ + F     L+ L L + +L  + S        LK L+L GN       T
Sbjct: 59  S--SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 223 WVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLY 282
            +  N T L+                         L + N     ++       L  L  
Sbjct: 117 SLFPNLTNLQ------------------------TLRIGNVETFSEIRRIDFAGLTSLNE 152

Query: 283 IDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG- 341
           +++       Y   S+  ++ +  L L   + S  L         S+  L+L   N    
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTL-HLSESAFLLEIFADILSSVRYLELRDTNLARF 211

Query: 342 --QIFPKYMNLTQLEFLYLENNKFSG-------KIEEGLSNSNELNELDISNNLLSGHIP 392
                P     + ++ L    +  +        K+   +   +E+   D + N L    P
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271

Query: 393 HWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEH 451
                 S   K                 +   ++  L + +  L   +++ +  L  ++ 
Sbjct: 272 SESDVVSELGK-----------------VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

Query: 452 LYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQ---ISESLTLRFLLLRGNYL 507
           + ++ + +   +P +  +   +L  LDL +N                 +L+ L+L  N+L
Sbjct: 315 ITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

Query: 508 E--GQIPNQLCQLRRLGVLDLSHNRISGSIPSCL---TIMLLWVAGNVYLHEPYLQFFSA 562
               +    L  L+ L  LD+S N       SC     +  L ++         ++    
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST------GIRVVKT 427

Query: 563 IFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCN 622
               ++     S        N + S    L +++                    L +S N
Sbjct: 428 CIPQTLEVLDVS-------NNNLDSFSLFLPRLQE-------------------LYISRN 461

Query: 623 QLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRL 671
           +L   +P       +  + +S N L     G F  L  ++ + L  N  
Sbjct: 462 KLKT-LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  109 bits (275), Expect = 3e-25
 Identities = 84/537 (15%), Positives = 163/537 (30%), Gaps = 68/537 (12%)

Query: 182 QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSF 241
              V    + +   IPS L     +K LDLS N +        LR    L+ L L ++  
Sbjct: 6   ASGVCDGRSRSFTSIPSGLTA--AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI 62

Query: 242 TGNLQLPKTKHDFLHHL---DVSNNNLTGKLPEDMGIILQKLLYIDMSDNRF-EGYLPSS 297
                +       L  L   D+S+N+L+  L       L  L Y+++  N +    + S 
Sbjct: 63  N---TIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 298 IGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEF 355
              +  L  LR+       E+      G  SL  L++   +   + +      ++  +  
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL--RNYQSQSLKSIRDIHH 176

Query: 356 LYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGN 415
           L L  ++ +  +E      + +  L++ +  L+         FS      + S M     
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARF------QFSPLPVDEVSSPMKKLAF 230

Query: 416 IPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLIT 475
             + L +     LL +    L        + +         +       +    +  +  
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290

Query: 476 LDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQ-LRRLGVLDLSHNRISGS 534
           L +        +    S    ++ + +  + +   +P    Q L+ L  LDLS N +   
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 535 IPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVK 594
                     W +    L    L       +   G                  I   L  
Sbjct: 350 YLKNSACKGAWPS----LQTLVLSQNHLRSMQKTG-----------------EILLTLKN 388

Query: 595 VE-------FMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFL 647
           +                      +++   L+LS   +   + + I    +  L++S N L
Sbjct: 389 LTSLDISRNTFHPMPDSCQWPEKMRF---LNLSSTGIRV-VKTCIPQ-TLEVLDVSNNNL 443

Query: 648 SGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSN---FNVSFNNLSGLIPD 701
             S       L+    L +S N+L       L + +         +S N L  +   
Sbjct: 444 D-SFSLFLPRLQE---LYISRNKLK-----TLPDASLFPVLLVMKISRNQLKSVPDG 491

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  101 bits (253), Expect = 2e-22
 Identities = 58/390 (14%), Positives = 122/390 (31%), Gaps = 18/390 (4%)

Query: 326 CISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNN 385
           C + G+ D    +F     P  +    ++ L L  NK +      L     L  L + ++
Sbjct: 4   CDASGVCDGRSRSFTS--IPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 386 LLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSVSENCLSG-PMTSS 443
            ++  I          L+ L +S   L  ++ +       SL  L++  N      +TS 
Sbjct: 61  RIN-TIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 444 F-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLTLRFLL 501
           F NL++L+ L +        I    F   ++L  L+++           +     +  L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 502 LRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTI-MLLWVAGNVYLHEPYLQFF 560
           L  +     +      L  +  L+L    ++    S L +  +      +      L   
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 561 SAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLS 620
           S   +  +  Y             +  +       E    +         I+    L + 
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLG-DFNPSESDVVSELGKVETVTIRR---LHIP 294

Query: 621 CNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRL 679
              L   + +    L +++ + +  + +         +LK +E LDLS N +  +     
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 680 TELNFLSN---FNVSFNNLSGLIPDKGQFA 706
                  +     +S N+L  +        
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 22/243 (9%)

Query: 7   PKLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQG--LTKLKNLEALD 64
            K+E  + + L      + + +   ++ L  +K + +    +  +       LK+LE LD
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD 340

Query: 65  LSYNNISGSSESQGVC--ELKNLSEFILRGINIK--GHLPDCLKNLSHLKVLDISYNQLS 120
           LS N +         C     +L   +L   +++      + L  L +L  LDIS N   
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

Query: 121 GTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANH--SKLEVLLLSSRTNMLSVKTENFL 178
             +P +      + +L L          +  +       LEVL +S+  N L       L
Sbjct: 401 -PMPDSCQWPEKMRFLNLSSTG------IRVVKTCIPQTLEVLDVSN--NNL---DSFSL 448

Query: 179 PTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTN 238
              +L+ L +    LK +P   L    L ++ +S N L    P  +    T L+ ++L  
Sbjct: 449 FLPRLQELYISRNKLKTLPDASLFPV-LLVMKISRNQL-KSVPDGIFDRLTSLQKIWLHT 506

Query: 239 NSF 241
           N +
Sbjct: 507 NPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 61/319 (19%), Positives = 110/319 (34%), Gaps = 49/319 (15%)

Query: 34  NLTNLKILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQ-------GVCELKNL 85
                 + D S   +  L + + +L  +E  D + N +   + S+       G  E   +
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 86  SEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEG 145
               +    +   L      L  +K + +  +++     S    L SLE+L L +N    
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 146 TFLLNS--LANHSKLEVLLLSS-RTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLH 202
            +L NS        L+ L+LS      +    E  L    L  L +       +P     
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW 408

Query: 203 QYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTG-NLQLPKTKHDFLHHLDVS 261
              ++ L+LS   +     T + +    LE L ++NN+    +L LP+     L  L +S
Sbjct: 409 PEKMRFLNLSSTGIR-VVKTCIPQT---LEVLDVSNNNLDSFSLFLPR-----LQELYIS 459

Query: 262 NNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAP 321
            N L   LP+    +   LL + +S N+ +                          +P  
Sbjct: 460 RNKLK-TLPD--ASLFPVLLVMKISRNQLK-------------------------SVPDG 491

Query: 322 LLTGCISLGLLDLSGNNFY 340
           +     SL  + L  N + 
Sbjct: 492 IFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 59/375 (15%), Positives = 121/375 (32%), Gaps = 60/375 (16%)

Query: 22  SNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCE 81
           S   F + +    L++++ L+L    +   Q      +  +  +      GS        
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV------- 234

Query: 82  LKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQL---SGTLPSAITTLTSLEYLAL 138
           L + S   L        L   +  LS ++  D + N L   + +    ++ L  +E + +
Sbjct: 235 LTDESFNELL------KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 139 LDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPS 198
              +    +L   L+                       +    ++K + + N  + ++P 
Sbjct: 289 RRLHIPQFYLFYDLST---------------------VYSLLEKVKRITVENSKVFLVPC 327

Query: 199 FLLHQ-YDLKLLDLSGNNL--VGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF- 254
                   L+ LDLS N +       +        L+ L L+ N       + KT     
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR---SMQKTGEILL 384

Query: 255 ----LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLP 310
               L  LD+S N     +P+      +K+ ++++S       + + I   + L  L + 
Sbjct: 385 TLKNLTSLDISRNTFH-PMPDSCQ-WPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVS 439

Query: 311 KNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEG 370
            NN        L      L  L +S N    +  P       L  + +  N+     +  
Sbjct: 440 NNNLD-SFSLFLP----RLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGI 492

Query: 371 LSNSNELNELDISNN 385
                 L ++ +  N
Sbjct: 493 FDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 31  GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
                  ++ L+LS  GI  ++     + LE LD+S NN+   S       L  L E  +
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCI-PQTLEVLDVSNNNLDSFSLF-----LPRLQELYI 458

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGT---- 146
               +K  LPD       L V+ IS NQL          LTSL+ + L  N ++ +    
Sbjct: 459 SRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516

Query: 147 -FLLNSLANHSKLEV 160
            +L   L  +S+ E 
Sbjct: 517 DYLSRWLNKNSQKEQ 531

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  143 bits (363), Expect = 9e-37
 Identities = 110/508 (21%), Positives = 177/508 (34%), Gaps = 67/508 (13%)

Query: 31  GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
               L       L    +T     T L  +  L      I       GV  L NL++   
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID---GVEYLNNLTQINF 75

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLN 150
               +    P  LKNL+ L  + ++ NQ++    + +  LT+L  L L +N       ++
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD---ID 128

Query: 151 SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLD 210
            L N + L  L LSS  N +S           L+ L   N    + P  L +   L+ LD
Sbjct: 129 PLKNLTNLNRLELSS--NTIS-DISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLD 183

Query: 211 LSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLP 270
           +S N +  D     L   T LE+L  TNN  +    L    +  L  L ++ N L     
Sbjct: 184 ISSNKVS-DISV--LAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLK---- 234

Query: 271 EDMGII--LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCIS 328
            D+G +  L  L  +D+++N+     P  +  +  L  L+L  N  S   P   L G  +
Sbjct: 235 -DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP---LAGLTA 288

Query: 329 LGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS 388
           L  L+L+ N           NL  L +L L  N  S      +S+  +L  L   NN +S
Sbjct: 289 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVS 344

Query: 389 GHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSS 448
                 + N +                         ++N LS   N +S  +T   NL+ 
Sbjct: 345 D--VSSLANLT-------------------------NINWLSAGHNQISD-LTPLANLTR 376

Query: 449 LEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLE 508
           +  L L   + +          S   T+         + P  IS+  +     +  N   
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPS 434

Query: 509 GQIPNQLCQLRRLGVLDLSHNRISGSIP 536
                      +   +       SG++ 
Sbjct: 435 -YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (295), Expect = 5e-28
 Identities = 82/442 (18%), Positives = 154/442 (34%), Gaps = 61/442 (13%)

Query: 103 LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLL 162
              L+      +    ++ T+    T L  +  L       +    ++ +   + L  + 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQIN 74

Query: 163 LSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPT 222
            S+  N L+  T          +  L                 L  + ++ N +    P 
Sbjct: 75  FSN--NQLTDITP---------LKNLTK---------------LVDILMNNNQIADITP- 107

Query: 223 WVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLY 282
             L N T L  L L NN  T    L    +  L+ L++S+N ++          L  L  
Sbjct: 108 --LANLTNLTGLTLFNNQITDIDPLKNLTN--LNRLELSSNTISDISALSG---LTSLQQ 160

Query: 283 IDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQ 342
           +   +   +      +  +  L  L +  N  S      +L    +L  L  + N     
Sbjct: 161 LSFGNQVTD---LKPLANLTTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQISDI 214

Query: 343 IFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDL 402
                  LT L+ L L  N+        L++   L +LD++NN +S   P  +   +  L
Sbjct: 215 TPLG--ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTK-L 267

Query: 403 KVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGP 462
             L +    +    P   L   +L  L ++EN L    +   NL +L +L L  N++S  
Sbjct: 268 TELKLGANQISNISPLAGLT--ALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDI 324

Query: 463 IPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLG 522
            P++    + L  L   +N+ S V    ++    + +L    N +    P  L  L R+ 
Sbjct: 325 SPVS--SLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 523 VLDLSHNRISGSIPSCLTIMLL 544
            L L+    + +  +    + +
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSI 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  102 bits (257), Expect = 3e-23
 Identities = 98/500 (19%), Positives = 168/500 (33%), Gaps = 69/500 (13%)

Query: 206 LKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN---SFTGNLQLPKTKHDFLHHLDVSN 262
                L   N+          +  ++  L        S  G   L       L  ++ SN
Sbjct: 26  KMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSIDGVEYLNN-----LTQINFSN 77

Query: 263 NNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL 322
           N LT   P      L KL+ I M++N+      + +  +  L  L L  N  +   P   
Sbjct: 78  NQLTDITPLKN---LTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--- 129

Query: 323 LTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDI 382
           L    +L  L+LS N            LT L+ L   N        + L+N   L  LDI
Sbjct: 130 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDI 184

Query: 383 SNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTS 442
           S+N +S      +   ++ L+ L+ +   +    P  +L   +L+ LS++ N L     +
Sbjct: 185 SSNKVSD--ISVLAKLTN-LESLIATNNQISDITPLGILT--NLDELSLNGNQLKDI-GT 238

Query: 443 SFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLL 502
             +L++L  L L  N +S   P++    + L  L L  N+ S + P  ++    L  L L
Sbjct: 239 LASLTNLTDLDLANNQISNLAPLSGL--TKLTELKLGANQISNISP--LAGLTALTNLEL 294

Query: 503 RGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP--SCLTIMLLWVAGNVYLHEPYLQFF 560
             N LE   P  +  L+ L  L L  N IS   P  S   +  L+   N       +   
Sbjct: 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN------KVSDV 346

Query: 561 SAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLS 620
           S++                       +    +  +        +L   +N+  +  L L+
Sbjct: 347 SSL-----------------------ANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 383

Query: 621 CNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLT 680
               T    +   ++ I     +        P + S+       D++ N  S        
Sbjct: 384 DQAWTNAPVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPS-YTNEVSY 441

Query: 681 ELNFLSNFNVSFNNLSGLIP 700
             +            SG + 
Sbjct: 442 TFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 98.5 bits (246), Expect = 8e-22
 Identities = 78/408 (19%), Positives = 154/408 (37%), Gaps = 58/408 (14%)

Query: 296 SSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEF 355
            +   +   +   L K N +  +     T    +  L         +       L  L  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQ 72

Query: 356 LYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGN 415
           +   NN+ +      L N  +L ++ ++NN ++   P  + N ++ L  L +    +   
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTN-LTGLTLFNNQITDI 127

Query: 416 IPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLIT 475
            P + L   +LN L +S N +S   ++   L+SL+ L    N ++   P+A    + L  
Sbjct: 128 DPLKNLT--NLNRLELSSNTISDI-SALSGLTSLQQLSFG-NQVTDLKPLANL--TTLER 181

Query: 476 LDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISG-- 533
           LD+  N+ S +    +++   L  L+   N +    P  L  L  L  L L+ N++    
Sbjct: 182 LDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG 237

Query: 534 SIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLV 593
           ++ S   +  L +A N       +   + +                       S   +L 
Sbjct: 238 TLASLTNLTDLDLANN------QISNLAPL-----------------------SGLTKLT 268

Query: 594 KVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIP 652
           +++        +   + +  +  L+L+ NQL     S I +L  +  L L +N +S   P
Sbjct: 269 ELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP 326

Query: 653 GSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIP 700
              S+L  ++ L   +N++S      L  L  ++  +   N +S L P
Sbjct: 327 --VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 85.4 bits (212), Expect = 1e-17
 Identities = 78/376 (20%), Positives = 135/376 (35%), Gaps = 32/376 (8%)

Query: 328 SLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLL 387
            LG   ++ +    QIF     L +     L     +  +    ++ +++  L      +
Sbjct: 2   PLGSATITQDTPINQIFTDT-ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGI 58

Query: 388 SGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLS 447
              I   +   ++ L  +  S   L    P  L N   L  + ++ N ++   T   NL+
Sbjct: 59  K-SIDG-VEYLNN-LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TPLANLT 112

Query: 448 SLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYL 507
           +L  L L  N ++   P+     +NL  L+L  N  S +    +S   +L+ L   GN +
Sbjct: 113 NLTGLTLFNNQITDIDPLKNL--TNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQV 167

Query: 508 EGQIPNQLCQLRRLGVLDLSHNRISG--SIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFV 565
               P  L  L  L  LD+S N++S    +     +  L    N       L   + +  
Sbjct: 168 TDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 225

Query: 566 GSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLT 625
            S+    N     G   +        L  ++        L   S +  +  L L  NQ++
Sbjct: 226 LSL--NGNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 278

Query: 626 GGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNF 684
               S +  L  +  L L+ N L    P   SNLK +  L L  N +S   P  ++ L  
Sbjct: 279 N--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 332

Query: 685 LSNFNVSFNNLSGLIP 700
           L       N +S +  
Sbjct: 333 LQRLFFYNNKVSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 41/218 (18%), Positives = 79/218 (36%), Gaps = 36/218 (16%)

Query: 31  GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
             A LT L  L+L+   +  +  ++ LKNL  L L +NNIS  S                
Sbjct: 282 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--------------- 326

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLN 150
                       + +L+ L+ L    N++S    S++  LT++ +L+   N       L 
Sbjct: 327 ------------VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD---LT 369

Query: 151 SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLD 210
            LAN +++  L L+      +    N+     +           + P+ +         D
Sbjct: 370 PLANLTRITQLGLND--QAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPD 427

Query: 211 LSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLP 248
           ++ N     +   V    ++   +     +F+G +  P
Sbjct: 428 ITWNLP--SYTNEVSYTFSQPVTIGKGTTTFSGTVTQP 463

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 39/280 (13%), Positives = 90/280 (32%), Gaps = 45/280 (16%)

Query: 424 GSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRF 483
           G L   +++++     + +   L+      L   +++  +         + TL       
Sbjct: 1   GPLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDL--DQVTTLQADRLGI 58

Query: 484 SGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP--SCLTI 541
             +    +     L  +    N L    P  L  L +L  + +++N+I+   P  +   +
Sbjct: 59  KSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNL 114

Query: 542 MLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKN 601
             L +  N       +     +                            L ++E  +  
Sbjct: 115 TGLTLFNN------QITDIDPL-----------------------KNLTNLNRLELSSNT 145

Query: 602 RYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKW 660
             ++   S +  +  L              + +L  +  L++S N +S       + L  
Sbjct: 146 ISDISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTN 200

Query: 661 IESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIP 700
           +ESL  ++N++S   P  L  L  L   +++ N L  +  
Sbjct: 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (346), Expect = 2e-35
 Identities = 77/356 (21%), Positives = 138/356 (38%), Gaps = 28/356 (7%)

Query: 33  ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG 92
           A+L       L    +T +    +L+++  L ++   ++      G+  L NL    L G
Sbjct: 19  ADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ---GIEYLTNLEYLNLNG 75

Query: 93  INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSL 152
             I    P  L NL  L  L I  N+++    SA+  LT+L  L L ++N      ++ L
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD---ISPL 128

Query: 153 ANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLS 212
           AN +K+  L L +  N              L  L +    +K +     +  DL  L L+
Sbjct: 129 ANLTKMYSLNLGA--NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPI-ANLTDLYSLSLN 185

Query: 213 GNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPED 272
            N +    P   L + T L       N  T    +       L+ L + NN +T   P  
Sbjct: 186 YNQIEDISP---LASLTSLHYFTAYVNQITDITPVANMTR--LNSLKIGNNKITDLSPLA 240

Query: 273 MGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLL 332
               L +L ++++  N+      +++ ++  L  L +  N  S      +L     L  L
Sbjct: 241 N---LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD---ISVLNNLSQLNSL 292

Query: 333 DLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS 388
            L+ N    +       LT L  L+L  N  +      L++ ++++  D +N ++ 
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  122 bits (309), Expect = 1e-30
 Identities = 67/355 (18%), Positives = 135/355 (38%), Gaps = 28/355 (7%)

Query: 38  LKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKG 97
              L      I  +     L       L   +++         EL+++++ ++ G  +  
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKVA- 57

Query: 98  HLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSK 157
            +   ++ L++L+ L+++ NQ++    S ++ L  L  L +  N       +++L N + 
Sbjct: 58  SIQG-IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD---ISALQNLTN 111

Query: 158 LEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLV 217
           L  L L+   + +S          ++  L L   +     S L +   L  L ++ + + 
Sbjct: 112 LRELYLNE--DNIS-DISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168

Query: 218 GDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIIL 277
              P   + N T L +L L  N       L       LH+     N +T   P      +
Sbjct: 169 DVTP---IANLTDLYSLSLNYNQIEDISPLASLTS--LHYFTAYVNQITDITPVAN---M 220

Query: 278 QKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGN 337
            +L  + + +N+      S +  +  L +L +  N  S  + A  +     L +L++  N
Sbjct: 221 TRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD-INA--VKDLTKLKMLNVGSN 275

Query: 338 NFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIP 392
                      NL+QL  L+L NN+   +  E +     L  L +S N ++   P
Sbjct: 276 QISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (273), Expect = 7e-26
 Identities = 64/333 (19%), Positives = 120/333 (36%), Gaps = 30/333 (9%)

Query: 206 LKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTG--NLQLPKTKHDFLHHLDVSNN 263
                L   ++              +  L +          ++        L +L+++ N
Sbjct: 24  GIRAVLQKASVTDVVT---QEELESITKLVVAGEKVASIQGIEYLTN----LEYLNLNGN 76

Query: 264 NLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLL 323
            +T   P      L KL  + +  N+      S++  +  L  L L ++N S   P   L
Sbjct: 77  QITDISPLSN---LVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP---L 128

Query: 324 TGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDIS 383
                +  L+L  N+    +     N+T L +L +  +K        ++N  +L  L ++
Sbjct: 129 ANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLN 185

Query: 384 NNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSS 443
            N +    P  + + +S L         +    P  + N   LN L +  N ++  ++  
Sbjct: 186 YNQIEDISP--LASLTS-LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSPL 239

Query: 444 FNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLR 503
            NLS L  L +  N +S    +     + L  L++  N+ S +    ++    L  L L 
Sbjct: 240 ANLSQLTWLEIGTNQISDINAVKDL--TKLKMLNVGSNQISDISV--LNNLSQLNSLFLN 295

Query: 504 GNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
            N L  +    +  L  L  L LS N I+   P
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (253), Expect = 3e-23
 Identities = 72/383 (18%), Positives = 144/383 (37%), Gaps = 58/383 (15%)

Query: 296 SSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEF 355
               ++   I   L K + +  +         S+  L ++G             LT LE+
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV--ASIQGIEYLTNLEY 70

Query: 356 LYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGN 415
           L L  N+ +      LSN  +L  L I  N ++      + N ++ L+ L +++  +   
Sbjct: 71  LNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTN-LRELYLNEDNISDI 125

Query: 416 IPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLIT 475
            P  L N   +  L++  N     ++   N++ L +L +  + +    PIA    ++L +
Sbjct: 126 SP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANL--TDLYS 181

Query: 476 LDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSI 535
           L L  N+   + P  ++   +L +     N +    P  +  + RL  L + +N+I+   
Sbjct: 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237

Query: 536 PSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSI--FPQLV 593
           P         +A    L    +                         N +  I     L 
Sbjct: 238 P---------LANLSQLTWLEI-----------------------GTNQISDINAVKDLT 265

Query: 594 KVE--FMTKNR-YELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSG 649
           K++   +  N+  ++   +N+  +  L L+ NQL       IG L  +  L LS N ++ 
Sbjct: 266 KLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 650 SIPGSFSNLKWIESLDLSHNRLS 672
             P   ++L  ++S D ++  + 
Sbjct: 326 IRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.8 bits (234), Expect = 7e-21
 Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 17/219 (7%)

Query: 22  SNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCE 81
           +N     +   +N+T L  L ++   +  +  +  L +L +L L+YN I   S    +  
Sbjct: 141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP---LAS 197

Query: 82  LKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDN 141
           L +L  F      I    P  + N++ L  L I  N+++    S +  L+ L +L +  N
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTN 253

Query: 142 NFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK-VIPSFL 200
                  +N++ + +KL++L + S  N +S          QL  L L N  L       +
Sbjct: 254 QISD---INAVKDLTKLKMLNVGS--NQIS-DISVLNNLSQLNSLFLNNNQLGNEDMEVI 307

Query: 201 LHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN 239
               +L  L LS N++    P   L + +K+++    N 
Sbjct: 308 GGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.7 bits (195), Expect = 8e-16
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 31  GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
             ANL+ L  L++    I+ +  +  L  L+ L++  N IS  S    +  L  L+   L
Sbjct: 238 PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISV---LNNLSQLNSLFL 294

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNN 142
               +     + +  L++L  L +S N ++      + +L+ ++     +  
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.8 bits (164), Expect = 6e-12
 Identities = 45/290 (15%), Positives = 102/290 (35%), Gaps = 34/290 (11%)

Query: 420 LLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLR 479
             +        + +  ++  +T    L S+  L +    ++    I     +NL  L+L 
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQE-ELESITKLVVAGEKVASIQGIEYL--TNLEYLNLN 74

Query: 480 DNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISG--SIPS 537
            N+ + + P  +S  + L  L +  N +     + L  L  L  L L+ + IS    + +
Sbjct: 75  GNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPLAN 130

Query: 538 CLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYN-STFHFGHYGNGVYSI-----FPQ 591
              +  L +  N  L +             +      +        + V  +        
Sbjct: 131 LTKMYSLNLGANHNLSDL----------SPLSNMTGLNYLTVTE--SKVKDVTPIANLTD 178

Query: 592 LVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGS 650
           L  +        ++   +++  +       NQ+T   P  + ++ ++  L +  N ++  
Sbjct: 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL 236

Query: 651 IPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIP 700
            P   +NL  +  L++  N++S      + +L  L   NV  N +S +  
Sbjct: 237 SP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 617 LDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV 675
           L++  NQ++    + + DL +++ LN+  N +S       +NL  + SL L++N+L  + 
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 676 PPRLTELNFLSNFNVSFNNLSGLIP 700
              +  L  L+   +S N+++ + P
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 617 LDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV 675
           L++  NQ++    S + +L Q+  L L+ N L          L  + +L LS N ++   
Sbjct: 270 LNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 676 PPRLTELNFLSNFNVSFNNLS 696
           P  L  L+ + + + +   + 
Sbjct: 328 P--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 7e-04
 Identities = 18/98 (18%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 604 ELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIE 662
           +++  +++   +   L    +T        +L  I  L ++   ++ SI G    L  +E
Sbjct: 14  QIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQG-IEYLTNLE 69

Query: 663 SLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIP 700
            L+L+ N+++      L+ L  L+N  +  N ++ +  
Sbjct: 70  YLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITDISA 105

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (300), Expect = 1e-28
 Identities = 66/505 (13%), Positives = 132/505 (26%), Gaps = 94/505 (18%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
             N    KI  ++   +            N++ LDLS N +S  S               
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS--------------- 50

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
                        L   + L++L++S N L       + +L++L  L L +N       +
Sbjct: 51  ----------AADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNY------V 92

Query: 150 NSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLL 209
             L     +E L  ++  N                       N+  +          K +
Sbjct: 93  QELLVGPSIETLHAAN--N-----------------------NISRVSCSRGQG--KKNI 125

Query: 210 DLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF--LHHLDVSNNNLTG 267
            L+ N +            ++++ L L  N     +   +       L HL++  N +  
Sbjct: 126 YLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 268 KLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCI 327
            +     ++  KL  +D+S N+   ++         + ++ L  N     +    L    
Sbjct: 183 DVKGQ--VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE-KALRFSQ 237

Query: 328 SLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLL 387
           +L   DL GN F+      +          +          +                  
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 388 SGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLS 447
                 +                          L      LLS   +          N +
Sbjct: 297 EDLPAPFADRL--------------------IALKRKEHALLSGQGSETERLECERENQA 336

Query: 448 SLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYL 507
               +          I     R    ITL+ +       + +       L   L +    
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV-G 395

Query: 508 EGQIPNQLCQLRRLGVLDLSHNRIS 532
           + ++ +   +   L +L     R  
Sbjct: 396 QIELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (299), Expect = 2e-28
 Identities = 76/438 (17%), Positives = 138/438 (31%), Gaps = 52/438 (11%)

Query: 99  LPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKL 158
           + +  +N +  K+  ++ + L   L S   +  +++ L L  N          LA  +KL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 159 EVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVG 218
           E+L LSS  N+L           +     L                 L+ LDL+ N +  
Sbjct: 61  ELLNLSS--NVLYE-----TLDLE----SLST---------------LRTLDLNNNYVQ- 93

Query: 219 DFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQ 278
                 L     +E L   NN+ +   ++  ++     ++ ++NN +T  L +       
Sbjct: 94  -----ELLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRS 144

Query: 279 KLLYIDMSDNRFEG-YLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGN 337
           ++ Y+D+  N  +             L  L L  N    ++          L  LDLS N
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLSSN 201

Query: 338 NFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGN 397
                + P++ +   + ++ L NNK    IE+ L  S  L   D+  N            
Sbjct: 202 KL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-- 257

Query: 398 FSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF------NLSSLEH 451
           FS + +V  ++K  +K              L      C                      
Sbjct: 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL 317

Query: 452 LYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQI 511
           L  Q +     +       +    +D    ++  VI            L  +   L+ Q+
Sbjct: 318 LSGQGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 512 PNQLCQLRRLGVLDLSHN 529
            N       L        
Sbjct: 377 SNGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (274), Expect = 2e-25
 Identities = 67/453 (14%), Positives = 129/453 (28%), Gaps = 65/453 (14%)

Query: 32  FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILR 91
            A  T L++L+LS   +     L  L  L  LDL+ N +        +    ++      
Sbjct: 54  LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAA 107

Query: 92  GINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNS 151
             NI   +          K + ++ N+++          + ++YL L  N  +       
Sbjct: 108 NNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 152 LANHSKLEVLLLSSRTNMLS-VKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLD 210
            A+   LE L L    N +  VK +      +LK L L +  L  +         +  + 
Sbjct: 165 AASSDTLEHLNLQY--NFIYDVKGQVVFA--KLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220

Query: 211 LSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLP 270
           L  N L              +E     + +              L H D+  N       
Sbjct: 221 LRNNKL------------VLIEKALRFSQN--------------LEHFDLRGNGFHCGTL 254

Query: 271 EDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLG 330
            D     Q++  +     +    L     E   +  L         +LPAP     I+L 
Sbjct: 255 RDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL- 310

Query: 331 LLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGH 390
                                +   L  + ++   ++E    N     E+D         
Sbjct: 311 ------------------KRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYR-T 350

Query: 391 IPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLE 450
           +   +         L   K  L   +      H  L+              ++   S L+
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQ 410

Query: 451 HLYLQMNSLS-GPIPIALFRSSNLITLDLRDNR 482
            L   +       +     +++ +   D+  ++
Sbjct: 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (265), Expect = 3e-24
 Identities = 72/456 (15%), Positives = 132/456 (28%), Gaps = 38/456 (8%)

Query: 277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSG 336
             +     ++D+  +  L S       +  L L  N  S ++ A  L     L LL+LS 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 337 NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIG 396
           N  Y        +L+ L  L L NN         L     +  L  +NN +S  +     
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS--CS 117

Query: 397 NFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF--NLSSLEHLYL 454
                 K + ++   +             +  L +  N +     +    +  +LEHL L
Sbjct: 118 RGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 455 QMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQ 514
           Q N +   +   +  +  L TLDL  N+ +  +  +   +  + ++ LR N L   I   
Sbjct: 177 QYNFIYD-VKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 515 LCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNS 574
           L   + L   DL  N        C T+   +                            +
Sbjct: 233 LRFSQNLEHFDLRGNGFH-----CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 575 TFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGD 634
             H+G Y        P   ++  + +  + L           L    ++           
Sbjct: 288 LGHYGAYCCEDLPA-PFADRLIALKRKEHAL-----------LSGQGSETERLECERENQ 335

Query: 635 LQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVP---PRLTELNFLSNFNVS 691
            + R ++         I       +   +L+     L  QV        EL+      V 
Sbjct: 336 ARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

Query: 692 FNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKS 727
              L     ++           R           ++
Sbjct: 396 QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.6 bits (230), Expect = 7e-20
 Identities = 49/369 (13%), Positives = 109/369 (29%), Gaps = 21/369 (5%)

Query: 30  VGFANLTNLKILDLSGCGITTLQGLT--KLKNLEALDLSYNNISGSSESQGVCELKNLSE 87
           V  +     K + L+   IT L+ L       ++ LDL  N I   + ++       L  
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 88  FILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTF 147
             L+   I   +   +   + LK LD+S N+L+  +     +   + +++L +N      
Sbjct: 174 LNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL--VL 228

Query: 148 LLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPS-FLLHQYDL 206
           +  +L     LE   L    N     T     +   +V  +    +K +           
Sbjct: 229 IEKALRFSQNLEHFDLRG--NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 207 KLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGN----LQLPKTKHDFLHHLDVSN 262
            L          D P         L+       S  G+    L+  +        +D   
Sbjct: 287 TLGHYGAYCC-EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 263 NNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLP---SSIGEMKALIFLRLPKNNFSGELP 319
                 + + + +  Q  + ++      +  +     +  E+   +   + +        
Sbjct: 346 EQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQH--A 402

Query: 320 APLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNE 379
               +    L  +       Y +      N  +   +Y        +    L   N   +
Sbjct: 403 TEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462

Query: 380 LDISNNLLS 388
           L +++   +
Sbjct: 463 LALASANAT 471

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 31/241 (12%), Positives = 60/241 (24%), Gaps = 34/241 (14%)

Query: 22  SNILFFIVVGFANLTNLKILDLSGCGITTL-------------------------QGLTK 56
           +N L  I        NL+  DL G G                             Q   +
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 57  LKNLEALDLSYNNISGSSES--QGVCELKNLSEFILRG-INIKGHLPDCLKNLSHLKVLD 113
                                   +  LK     +L G  +    L    +N +  + +D
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 114 ISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVK 173
               Q    +        +   L       +   + N    H++L+  L  +   +    
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNGRRAHAELDGTLQQAVGQIELQH 401

Query: 174 TENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEA 233
                   QL    +  Y    +    +    ++  D+  +       T +   N +L+ 
Sbjct: 402 ATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE-----TQLAEENARLKK 456

Query: 234 L 234
           L
Sbjct: 457 L 457

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (289), Expect = 4e-28
 Identities = 59/363 (16%), Positives = 112/363 (30%), Gaps = 56/363 (15%)

Query: 34  NLTNLKILDLSGCGITTLQGL-TKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG 92
           + +  + L   G   T L+     L   +    +  N   S+  Q      N       G
Sbjct: 10  HSSGRENLYFQGS--TALRPYHDVLSQWQRHYNADRNRWHSAWRQ--ANSNNPQIETRTG 65

Query: 93  INIKGHLPDCLKNLSH--LKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLN 150
             +K    D L++ +      L++    L    P     L+ L+++ +         L +
Sbjct: 66  RALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL--MELPD 121

Query: 151 SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLD 210
           ++   + LE L L+           N                L+ +P+ +     L+ L 
Sbjct: 122 TMQQFAGLETLTLA----------RN---------------PLRALPASIASLNRLRELS 156

Query: 211 LSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLP 270
           +     + + P  +   +   E   L N                L  L +    +   LP
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVN----------------LQSLRLEWTGIR-SLP 199

Query: 271 EDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLG 330
             +   LQ L  + + ++     L  +I  +  L  L L         P P+  G   L 
Sbjct: 200 ASIAN-LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLK 256

Query: 331 LLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGH 390
            L L   +    +      LTQLE L L       ++   ++       + +  +L +  
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 391 IPH 393
             H
Sbjct: 317 DQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 50/344 (14%), Positives = 100/344 (29%), Gaps = 32/344 (9%)

Query: 97  GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHS 156
           G       + S  + L    +         ++             +          AN +
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNA-----DRNRWHSAWRQANSN 56

Query: 157 KLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNL 216
             ++   + R    +              L L +  L   P        L+ + +    L
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL 116

Query: 217 VGDFPTWVLRNNTKLEALFLTNNSFT------GNLQLPKTKHDFLHHLDVSNNNLTGKLP 270
           + + P   ++    LE L L  N          +L         L  L +       +LP
Sbjct: 117 M-ELPDT-MQQFAGLETLTLARNPLRALPASIASLN-------RLRELSIRACPELTELP 167

Query: 271 EDMGII--------LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL 322
           E +           L  L  + +        LP+SI  ++ L  L++  +  S  L  P 
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG-PA 224

Query: 323 LTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDI 382
           +     L  LDL G        P +     L+ L L++      +   +    +L +LD+
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 383 SNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSL 426
              +    +P  I    +   ++L+           + +   + 
Sbjct: 285 RGCVNLSRLPSLIAQLPA-NCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 54/333 (16%), Positives = 100/333 (30%), Gaps = 77/333 (23%)

Query: 8   KLEQRSNKWLFNNASNILFFI--VVGFANLTNLKILDLSGCGITTL-QGLTKLKNLEALD 64
           +    +N  +       L     ++  A       L+L    +        +L +L+ + 
Sbjct: 51  RQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMT 110

Query: 65  LSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLP 124
           +    +                            LPD ++  + L+ L ++ N L   LP
Sbjct: 111 IDAAGLM--------------------------ELPDTMQQFAGLETLTLARNPLR-ALP 143

Query: 125 SAITTLTSLEYLALLDNN--------FEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTEN 176
           ++I +L  L  L++               T           L+ L L      +      
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW--TGIR----- 196

Query: 177 FLPT-----FQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKL 231
            LP        LK L + N  L  +   + H   L+ LDL G   + ++P          
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF------- 249

Query: 232 EALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFE 291
                      G           L  L + + +    LP D+   L +L  +D+      
Sbjct: 250 -----------GGRAP-------LKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNL 290

Query: 292 GYLPSSIGEMKALIFLRLPKNNFSGELPAPLLT 324
             LPS I ++ A   + +P  +   +L      
Sbjct: 291 SRLPSLIAQLPANCIILVP-PHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 66/384 (17%), Positives = 109/384 (28%), Gaps = 78/384 (20%)

Query: 151 SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLD 210
              + S  E L     T +            Q +     + N         +  + ++  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDV----LSQWQRHYNADRNRWHSAWRQANSNNPQIET 62

Query: 211 LSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF--LHHLDVSNNNLTGK 268
            +G  L                AL L +       Q P        L H+ +    L  +
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 269 LPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCIS 328
           LP+ M      L  + ++ N     LP+SI  +  L  L +       ELP         
Sbjct: 119 LPDTMQQ-FAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPE-------P 169

Query: 329 LGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS 388
           L   D S          ++  L  L+ L LE       +   ++N   L  L I N+ LS
Sbjct: 170 LASTDAS---------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

Query: 389 GHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSS 448
             +   I +                                                L  
Sbjct: 220 -ALGPAIHH------------------------------------------------LPK 230

Query: 449 LEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLE 508
           LE L L+  +     P      + L  L L+D      +P  I     L  L LRG    
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 509 GQIPNQLCQLRRLGVLDLSHNRIS 532
            ++P+ + QL    ++ +  +  +
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 8/153 (5%)

Query: 31  GFANLTNLKILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
               L NL+ L L   GI +L   +  L+NL++L +  + +S    +  +  L  L E  
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKLEELD 235

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDIS-YNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
           LRG     + P      + LK L +   + L  TLP  I  LT LE L  L      + L
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLD-LRGCVNLSRL 293

Query: 149 LNSLANHSKLEVLLLSSRTNMLSVKTENFLPTF 181
            + +A      ++L+    ++ +   ++     
Sbjct: 294 PSLIAQLPANCIILVPP--HLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 9/122 (7%)

Query: 617 LDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV 675
           L+L    L    P +   L  ++ + +    L   +P +      +E+L L+ N L   +
Sbjct: 86  LELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 676 PPRLTELNFLSNFNVSFNNLSGLIPDK-GQFATFDESSYRGNLHLCGPTINKSCNSTEEV 734
           P  +  LN L   ++        +P+         E     NL     ++         +
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ----SLRLEWTGIRSL 198

Query: 735 PA 736
           PA
Sbjct: 199 PA 200

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 32  FANLTNLKILDLSGC-GITTL-QGLTKLKNLEALDLS-YNNISGSSESQGVCELKNLSEF 88
             +L  L+ LDL GC  +            L+ L L   +N+        +  L  L + 
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKL 282

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSL 133
            LRG      LP  +  L    ++ +  +  +           + 
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 617 LDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV 675
           L +  + L+  +   I  L ++  L+L       + P  F     ++ L L        +
Sbjct: 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269

Query: 676 PPRLTELNFLSNFNVSFNNLSGLIPD 701
           P  +  L  L   ++        +P 
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 617 LDLS-CNQLTGGIPSEIGDLQIRG----------LNLSYNFLSGSIPGSFSNLKWIESLD 665
           L +  C +LT  +P  +      G          L L +  +  S+P S +NL+ ++SL 
Sbjct: 155 LSIRACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK 212

Query: 666 LSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD 701
           + ++ LS  + P +  L  L   ++         P 
Sbjct: 213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPP 247

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 617 LDLS-CNQLTGGIPSEIGDLQ-IRGLNLS-YNFLSGSIPGSFSNLKWIESLDLSHNRLSG 673
           LDL  C  L    P   G    ++ L L   + L  ++P     L  +E LDL       
Sbjct: 234 LDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 674 QVPPRLTELNFLSNFNVSFNNLSGLIP 700
           ++P  + +L       V  +  + L  
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 617 LDLS-CNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQ 674
           L L  C+ L   +P +I  L  +  L+L        +P   + L     + +  +  +  
Sbjct: 258 LILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 675 VPPRLTEL 682
              R    
Sbjct: 317 DQHRPVAR 324

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  117 bits (295), Expect = 7e-28
 Identities = 99/462 (21%), Positives = 156/462 (33%), Gaps = 32/462 (6%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
             +L+ L+IL +S   I  L        + LE LDLS+N +   S         NL    
Sbjct: 41  ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHP----TVNLKHLD 96

Query: 90  LRGINIKGHLPDC--LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTF 147
           L        LP C    N+S LK L +S   L  +    I  L   + L +L   +    
Sbjct: 97  LSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155

Query: 148 LLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLK 207
               L + +   + ++              L      V  L   N+K +       Y L 
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFH----FILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211

Query: 208 LLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTG 267
           +L            T    +N  L  +  T NSF   LQL       + +  +SN  L G
Sbjct: 212 IL--------AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT--VWYFSISNVKLQG 261

Query: 268 KLPEDMGII----LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLL 323
           +L           L+ L    +  + F             +       +  +  +     
Sbjct: 262 QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG-TRMVHMLCP 320

Query: 324 TGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFS--GKIEEGLSNSNELNELD 381
           +       LD S N     +F    +LT+LE L L+ N+     KI E  +    L +LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 382 ISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMT 441
           IS N +S        +++  L  L MS   L   I   L     + +L +  N +     
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIKSIPK 438

Query: 442 SSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRF 483
               L +L+ L +  N L         R ++L  + L  N +
Sbjct: 439 QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.4 bits (232), Expect = 5e-20
 Identities = 96/526 (18%), Positives = 180/526 (34%), Gaps = 67/526 (12%)

Query: 40  ILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGH 98
           ++D S  G+  + + L++      L++S N IS                           
Sbjct: 4   LVDRSKNGLIHVPKDLSQ--KTTILNISQNYISELW------------------------ 37

Query: 99  LPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHS-- 156
               + +LS L++L IS+N++     S       LEYL L  N       L  ++ H   
Sbjct: 38  -TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK------LVKISCHPTV 90

Query: 157 KLEVLLLSSRTNMLSV--KTENFLPTFQLKVLGLPNYNLKVIP-SFLLHQYDLKLLDLSG 213
            L+ L LS   N        + F    QLK LGL   +L+      + H    K+L + G
Sbjct: 91  NLKHLDLSF--NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 214 NNLVGDFPTWVLRN--NTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPE 271
                      L++     L  +F TN  F   L +       L   ++          E
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV------LE 202

Query: 272 DMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGL 331
           D        +   +  N     L  +  E     F+R+ +  +   +    ++     G 
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262

Query: 332 LDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI 391
           LD    ++ G       +L  L    + ++ F           + +N  + + +     +
Sbjct: 263 LDFRDFDYSGT------SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-V 315

Query: 392 PHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLS--GPMTSSF-NLSS 448
                +  S    L  S   L   +     +   L  L +  N L     +      + S
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 449 LEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYL 507
           L+ L +  NS+S            +L++L++  N  +  I   +   + +  L L  N +
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV--LDLHSNKI 433

Query: 508 EGQIPNQLCQLRRLGVLDLSHNRIS----GSIPSCLTIMLLWVAGN 549
           +  IP Q+ +L  L  L+++ N++     G      ++  +W+  N
Sbjct: 434 K-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 89/493 (18%), Positives = 167/493 (33%), Gaps = 64/493 (12%)

Query: 205 DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF---LHHLDVS 261
              +L++S N +  +  T  + + +KL  L +++N       L  +   F   L +LD+S
Sbjct: 22  KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLS 77

Query: 262 NNNLTGKLPEDMGIILQKLLYIDMSDNRFEGY-LPSSIGEMKALIFLRLPKNNFSGELPA 320
           +N L  K+          L ++D+S N F+   +    G M  L FL L   +       
Sbjct: 78  HNKLV-KISCHP---TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 321 PLLTGCISLGLLDLSGNN--FYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELN 378
           P+    IS  LL L             +  N   L  ++  N +F   ++  +     L 
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 379 ELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNI--------PAQLLNHGSLNLLS 430
             +I   L      +++   +       +S + L              QL+ H ++   S
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 431 VSENCLSGPMTSSF------NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFS 484
           +S   L G +          +L +L    +  +    P        SN+   +   +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 485 GVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIML- 543
            V     S+      L    N L   +      L  L  L L  N++   +     +   
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQ 372

Query: 544 ------LWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEF 597
                 L ++ N   ++      S  +  S+ +   S+       + ++   P  +KV  
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCS--WTKSLLSLNMSSNILT---DTIFRCLPPRIKV-- 425

Query: 598 MTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFS 656
                              LDL  N++   IP ++  L  ++ LN++ N L     G F 
Sbjct: 426 -------------------LDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFD 465

Query: 657 NLKWIESLDLSHN 669
            L  ++ + L  N
Sbjct: 466 RLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.8 bits (176), Expect = 4e-13
 Identities = 67/456 (14%), Positives = 144/456 (31%), Gaps = 58/456 (12%)

Query: 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG 316
            L++S N ++ +L     + L KL  + +S NR +    S     + L +L L  N    
Sbjct: 25  ILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV- 82

Query: 317 ELPAPLLTGCISLGLLDLSGNNF----YGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLS 372
           ++         +L  LDLS N F      + F    N++QL+FL L            ++
Sbjct: 83  KISCHPTV---NLKHLDLSFNAFDALPICKEFG---NMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 373 NSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVS 432
           + N    L +                  D     +  +F        +L+     + ++ 
Sbjct: 137 HLNISKVLLVLGETYGEKED---PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 433 ENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGV---IPH 489
                  +++   +         ++ L+         +  L  ++   N F  +   + H
Sbjct: 194 -------LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 490 QISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGN 549
                 ++  + L+G             L+ L +  +  +                    
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG----------------- 289

Query: 550 VYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNG- 608
            +      + FS + + +         H         S     + ++F      +     
Sbjct: 290 -FPQSYIYEIFSNMNIKNFTVSGTRMVH-----MLCPSKISPFLHLDFSNNLLTDTVFEN 343

Query: 609 -SNIKYMVGLDLSCNQLTGGIPSEIGDL----QIRGLNLSYNFLSGSIP-GSFSNLKWIE 662
             ++  +  L L  NQL   +            ++ L++S N +S     G  S  K + 
Sbjct: 344 CGHLTELETLILQMNQLKE-LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402

Query: 663 SLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGL 698
           SL++S N L+  +   L     +   ++  N +  +
Sbjct: 403 SLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKSI 436

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.6 bits (165), Expect = 7e-12
 Identities = 47/238 (19%), Positives = 90/238 (37%), Gaps = 35/238 (14%)

Query: 8   KLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGL--TKLKNLEALDL 65
            L+  S   + ++        +  +   +N+ I + +  G   +  L  +K+     LD 
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYI--YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 66  SYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLS--GTL 123
           S N +  +      C                        +L+ L+ L +  NQL     +
Sbjct: 332 SNNLL--TDTVFENC-----------------------GHLTELETLILQMNQLKELSKI 366

Query: 124 PSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQL 183
               T + SL+ L +  N+          +    L  L +SS  N+L+      LP  ++
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS--NILTDTIFRCLPP-RI 423

Query: 184 KVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSF 241
           KVL L +  +K IP  ++    L+ L+++ N L    P  +    T L+ ++L  N +
Sbjct: 424 KVLDLHSNKIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 54/380 (14%), Positives = 111/380 (29%), Gaps = 41/380 (10%)

Query: 332 LDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI 391
           L++S N          ++L++L  L + +N+           + EL  LD+S+N L    
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV--- 82

Query: 392 PHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL-SGPMTSSF-NLSSL 449
                                   I        +L  L +S N   + P+   F N+S L
Sbjct: 83  -----------------------KISCHPT--VNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 450 EHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNYLE 508
           + L L    L     + +   ++L    +           +  E L       L   +  
Sbjct: 118 KFLGLSTTHLEKSSVLPI---AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 509 GQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSI 568
            +  + +  +    V +L  + I   +        L +   +    P L   +   + + 
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL-QTNPKLSNLTLNNIETT 233

Query: 569 GTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTG-- 626
              +        +    Y     +     +    ++    +++K +    +  +      
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG-TSLKALSIHQVVSDVFGFPQ 292

Query: 627 -GIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFL 685
             I     ++ I   N + +          S +     LD S+N L+  V      L  L
Sbjct: 293 SYIYEIFSNMNI--KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350

Query: 686 SNFNVSFNNLSGLIPDKGQF 705
               +  N L  L       
Sbjct: 351 ETLILQMNQLKELSKIAEMT 370

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.7 bits (160), Expect = 3e-11
 Identities = 47/251 (18%), Positives = 81/251 (32%), Gaps = 18/251 (7%)

Query: 26  FFIVVGFANLTNLKILDLSGCGITTLQGL-------TKLKNLEALDLSYNNISGSSESQG 78
           F  ++     T +    +S   +             T LK L    +  +      +S  
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYI 295

Query: 79  VCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLAL 138
                N++         +     C   +S    LD S N L+ T+      LT LE L L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 139 LDNNFEG-TFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP 197
             N  +  + +         L+ L +S  +     K  +   T  L  L + +  L    
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415

Query: 198 SFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLH- 256
              L    +K+LDL  N +    P  V++    L+ L + +N       +P    D L  
Sbjct: 416 FRCLPP-RIKVLDLHSNKIK-SIPKQVVK-LEALQELNVASNQLK---SVPDGIFDRLTS 469

Query: 257 --HLDVSNNNL 265
              + +  N  
Sbjct: 470 LQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 52/294 (17%), Positives = 101/294 (34%), Gaps = 27/294 (9%)

Query: 425 SLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRF 483
              +L++S+N +S   TS   +LS L  L +  N +          +  L  LDL  N+ 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 484 SGVIPHQISESLTLRFLLLRGNYLEG-QIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIM 542
             +  H       L+ L L  N  +   I  +   + +L  L LS   +  S    +  +
Sbjct: 82  VKISCHPTV---NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 543 ----LLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFM 598
               +L V G  Y  +   +        S+   + +              F  ++ V   
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN-----------KEFHFILDVSVK 187

Query: 599 TKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNL 658
           T    EL N   +      D  C+     +     + ++  L L+    + +       L
Sbjct: 188 TVANLELSNIKCVLE----DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243

Query: 659 KW---IESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFD 709
            W   +    +S+ +L GQ+  R  + +  S   +S + +   +    Q   ++
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  116 bits (293), Expect = 9e-28
 Identities = 64/296 (21%), Positives = 115/296 (38%), Gaps = 26/296 (8%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           FA+  +L+ L+L+   ++ ++      L NL  L L  N +           L NL++  
Sbjct: 52  FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLD 110

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
           +    I   L    ++L +LK L++  N L      A + L SLE L L   N   +   
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPT 169

Query: 150 NSLANHSKLEVLLLSSRTNMLS-VKTENFLPTFQLKVLGLPNYN-LKVIPSFLLHQYDLK 207
            +L++   L VL L      ++ ++  +F   ++LKVL + ++  L  +    L+  +L 
Sbjct: 170 EALSHLHGLIVLRLRH--LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 208 LLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN--------SFTGNLQLPKTKHDFLHHLD 259
            L ++  NL    P   +R+   L  L L+ N             L+        L  + 
Sbjct: 228 SLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR--------LQEIQ 278

Query: 260 VSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFS 315
           +    L   +       L  L  +++S N+      S    +  L  L L  N  +
Sbjct: 279 LVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (284), Expect = 1e-26
 Identities = 75/311 (24%), Positives = 123/311 (39%), Gaps = 17/311 (5%)

Query: 36  TNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
           T  ++LDL    I TL         +LE L+L+ N +S + E      L NL    LR  
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
            +K         LS+L  LDIS N++   L      L +L+ L + DN+        + +
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 154 NHSKLEVLLLSSRTNMLS-VKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQ-YDLKLLDL 211
             + LE L L      L+ + TE       L VL L + N+  I  +   + Y LK+L++
Sbjct: 150 GLNSLEQLTLEK--CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 212 SGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPK---TKHDFLHHLDVSNNNLTGK 268
           S    +       L     L +L +T+ + T    +P        +L  L++S N ++  
Sbjct: 208 SHWPYLDTMTPNCLY-GLNLTSLSITHCNLT---AVPYLAVRHLVYLRFLNLSYNPIS-T 262

Query: 269 LPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCIS 328
           +   M   L +L  I +   +     P +   +  L  L +  N  +  L   +     +
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGN 321

Query: 329 LGLLDLSGNNF 339
           L  L L  N  
Sbjct: 322 LETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (270), Expect = 7e-25
 Identities = 70/328 (21%), Positives = 119/328 (36%), Gaps = 29/328 (8%)

Query: 192 NLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFT----GNLQ- 246
               +P  +    + +LLDL  N +          +   LE L L  N  +    G    
Sbjct: 22  RFVAVPEGIPT--ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78

Query: 247 LPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIF 306
           L       L  L + +N L   +P  +   L  L  +D+S+N+    L     ++  L  
Sbjct: 79  LFN-----LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132

Query: 307 LRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFS 364
           L +  N+    +     +G  SL  L L   N      P     +L  L  L L +   +
Sbjct: 133 LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 365 GKIEEGLSNSNELNELDIS-NNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH 423
              +        L  L+IS    L    P+ +   +  L  L ++   L   +P   + H
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN--LTSLSITHCNLT-AVPYLAVRH 246

Query: 424 -GSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRD 480
              L  L++S N +S    S    L  L+ + L    L+  +    FR  + L  L++  
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSG 305

Query: 481 NRFSGVIPHQISESLT-LRFLLLRGNYL 507
           N+ +  +   +  S+  L  L+L  N L
Sbjct: 306 NQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (269), Expect = 1e-24
 Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 17/289 (5%)

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF 314
              LD+  N +   L +D       L  +++++N      P +   +  L  L L  N  
Sbjct: 34  TRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 315 SGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEG-L 371
              +P  + TG  +L  LD+S N     I   YM  +L  L+ L + +N     I     
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENKI--VILLDYMFQDLYNLKSLEVGDNDLV-YISHRAF 148

Query: 372 SNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLS 430
           S  N L +L +    L+      + +    L VL +  + +   I          L +L 
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNIN-AIRDYSFKRLYRLKVLE 206

Query: 431 VSENC-LSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIP 488
           +S    L     +     +L  L +   +L+  +P    R    L  L+L  N  S  I 
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPIS-TIE 264

Query: 489 HQISESLT-LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
             +   L  L+ + L G  L    P     L  L VL++S N+++ ++ 
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (261), Expect = 1e-23
 Identities = 69/361 (19%), Positives = 123/361 (34%), Gaps = 52/361 (14%)

Query: 39  KILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKG 97
           + +         + +G+        LDL  N I              L+           
Sbjct: 14  RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIK------------TLN----------- 48

Query: 98  HLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSK 157
              D   +  HL+ L+++ N +S   P A   L +L  L L  N  +    L      S 
Sbjct: 49  --QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSN 105

Query: 158 LEVLLLSSRTNMLS-VKTENFLPTFQLKVLGLPNYNLKVIPSFLL-HQYDLKLLDLSGNN 215
           L  L +S   N +  +    F   + LK L + + +L  I          L+ L L   N
Sbjct: 106 LTKLDISE--NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163

Query: 216 LVGDFPTWVLRNNTKLEALFLTNNSFT----GNLQ-LPKTKHDFLHHLDVSNNNLTGKLP 270
           L    PT  L +   L  L L + +       + + L +     L  L++S+      + 
Sbjct: 164 LT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR-----LKVLEISHWPYLDTMT 217

Query: 271 EDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLG 330
            +  +    L  + ++          ++  +  L FL L  N  S  +   +L   + L 
Sbjct: 218 PNC-LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQ 275

Query: 331 LLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEGL-SNSNELNELDISNNLL 387
            + L G      +   Y    L  L  L +  N+ +  +EE +  +   L  L + +N L
Sbjct: 276 EIQLVGGQL--AVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

Query: 388 S 388
           +
Sbjct: 333 A 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.6 bits (238), Expect = 8e-21
 Identities = 51/282 (18%), Positives = 94/282 (33%), Gaps = 41/282 (14%)

Query: 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG 316
            +          +PE    I  +   +D+  NR +            L  L L +N  S 
Sbjct: 15  AVLCHRKRFV-AVPEG---IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS- 69

Query: 317 ELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEGL-SN 373
            +         +L  L L  N    ++ P  +   L+ L  L +  NK    + + +  +
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQD 126

Query: 374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSVS 432
              L  L++ +N L                            I  +  +   SL  L++ 
Sbjct: 127 LYNLKSLEVGDNDLV--------------------------YISHRAFSGLNSLEQLTLE 160

Query: 433 ENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQI 491
           +  L+   T +  +L  L  L L+  +++     +  R   L  L++    +   +    
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 492 SESLTLRFLLLRGNYLEGQIPNQLCQ-LRRLGVLDLSHNRIS 532
              L L  L +    L   +P    + L  L  L+LS+N IS
Sbjct: 221 LYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 74/353 (20%), Positives = 120/353 (33%), Gaps = 60/353 (16%)

Query: 328 SLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEG-LSNSNELNELDISN 384
              LLDL  N    +   +    +   LE L L  N  S  +E G  +N   L  L + +
Sbjct: 33  ETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 385 NLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSVSENCLSGPMTSS 443
           N L   IP  +    S+L  L +S+  +   +   +     +L  L V +N L      +
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147

Query: 444 F-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLTLRFLL 501
           F  L+SLE L L+  +L+  IP         LI L LR    + +  +       L+ L 
Sbjct: 148 FSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 502 LRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFS 561
           +        +         L  L ++H  ++ ++P         V   VYL    L    
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA------VRHLVYLRFLNL---- 255

Query: 562 AIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSC 621
                     YN           +     +L +                      + L  
Sbjct: 256 ---------SYN---PISTIEGSMLHELLRLQE----------------------IQLVG 281

Query: 622 NQLTGGIPSEI--GDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLS 672
            QL   +      G   +R LN+S N L+      F ++  +E+L L  N L+
Sbjct: 282 GQLAV-VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 74/363 (20%), Positives = 119/363 (32%), Gaps = 92/363 (25%)

Query: 351 TQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM 410
           T+   L L  N+     ++  ++   L EL+++ N++S                      
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS---------------------- 69

Query: 411 FLKGNIPAQLLNH-GSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALF 468
                +     N+  +L  L +  N L       F  LS+L  L +  N +   +   +F
Sbjct: 70  ----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMF 124

Query: 469 RS-SNLITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNYLEGQIPNQLCQLRRLGVLDL 526
           +   NL +L++ DN     I H+    L  L  L L    L       L  L  L VL L
Sbjct: 125 QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183

Query: 527 SHNRISGSIPSCL-----TIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHY 581
            H  I+ +I          + +L ++   YL                             
Sbjct: 184 RHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--------------------- 221

Query: 582 GNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSE-IGDL-QIRG 639
                                     G N+     L ++   LT  +P   +  L  +R 
Sbjct: 222 -------------------------YGLNLTS---LSITHCNLTA-VPYLAVRHLVYLRF 252

Query: 640 LNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPR-LTELNFLSNFNVSFNNLSGL 698
           LNLSYN +S         L  ++ + L   +L+  V P     LN+L   NVS N L+ L
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTL 311

Query: 699 IPD 701
              
Sbjct: 312 EES 314

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.4 bits (165), Expect = 7e-12
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 15  KWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISG 72
           K L  +    L  +        NL  L ++ C +T +    +  L  L  L+LSYN IS 
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS- 261

Query: 73  SSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTS 132
           + E   + EL  L E  L G  +    P   + L++L+VL++S NQL+    S   ++ +
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 133 LEYLALLDNNF 143
           LE L L  N  
Sbjct: 322 LETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 617 LDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVP 676
           +     +    +P  I   + R L+L  N +       F++   +E L+L+ N +S  V 
Sbjct: 16  VLCHRKRFVA-VPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVE 72

Query: 677 PR-LTELNFLSNFNVSFNNLSGL 698
           P     L  L    +  N L  +
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLKLI 95

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  113 bits (284), Expect = 4e-27
 Identities = 72/371 (19%), Positives = 123/371 (33%), Gaps = 49/371 (13%)

Query: 20  NASNILFFIVVGFANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQ 77
           +      +       L N KI+      +  L    L   + +E L+L+   I       
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------ 82

Query: 78  GVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA 137
                            I             ++ L + +N +    P     +  L  L 
Sbjct: 83  ----------------EID---TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP 197
           L  N+   +       N  KL  L + S  N+  ++ + F  T  L+ L L +  L  + 
Sbjct: 124 LERNDLS-SLPRGIFHNTPKLTTLSM-SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181

Query: 198 SFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHH 257
             L+    L   ++S N L        L     +E L  ++NS      +    +  L  
Sbjct: 182 LSLIPS--LFHANVSYNLLS------TLAIPIAVEELDASHNSIN---VVRGPVNVELTI 230

Query: 258 LDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGE 317
           L + +NNLT      +      L+ +D+S N  E  +     +M+ L  L +  N     
Sbjct: 231 LKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-A 286

Query: 318 LPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNEL 377
           L         +L +LDLS N+    +        +LE LYL++N               L
Sbjct: 287 LNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT---L 341

Query: 378 NELDISNNLLS 388
             L +S+N   
Sbjct: 342 KNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (264), Expect = 2e-24
 Identities = 77/405 (19%), Positives = 145/405 (35%), Gaps = 34/405 (8%)

Query: 99  LPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKL 158
           +   L+       + I              TL + + +   ++          L +  ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 159 EVLLLSSRTNMLS-VKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQ-YDLKLLDLSGNNL 216
           E+L L+     +  + T  F     ++ L +    ++ +P  +      L +L L  N+L
Sbjct: 72  ELLNLND--LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 217 VGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPK---TKHDFLHHLDVSNNNLTGKLPEDM 273
               P  +  N  KL  L ++NN+     ++          L +L +S+N LT  +   +
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLE---RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL 184

Query: 274 GIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLD 333
              +  L + ++S N       S++    A+  L    N+ +  +  P+      L +L 
Sbjct: 185 ---IPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNV---ELTILK 232

Query: 334 LSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPH 393
           L  NN         +N   L  + L  N+    +         L  L ISNN L   +  
Sbjct: 233 LQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNL 289

Query: 394 WIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLY 453
           +     + LKVL +S   L  ++         L  L +  N +     S+    +L++L 
Sbjct: 290 YGQPIPT-LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTH--HTLKNLT 345

Query: 454 LQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLR 498
           L  N        ALFR  N+    + D      I +Q+   L  +
Sbjct: 346 LSHNDWDCNSLRALFR--NVARPAVDDADQHCKIDYQLEHGLCCK 388

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  104 bits (261), Expect = 4e-24
 Identities = 68/354 (19%), Positives = 114/354 (32%), Gaps = 32/354 (9%)

Query: 206 LKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPK---TKHDFLHHLDVSN 262
            K++    + +    P  +L +  ++E L L +       ++          +  L +  
Sbjct: 47  QKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGF 102

Query: 263 NNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL 322
           N +   LP  +   +  L  + +  N               L  L +  NN    +    
Sbjct: 103 NAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

Query: 323 LTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDI 382
                SL  L LS N            +  L    +  N  S      L+    + ELD 
Sbjct: 161 FQATTSLQNLQLSSNRL--THVDLS-LIPSLFHANVSYNLLST-----LAIPIAVEELDA 212

Query: 383 SNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTS 442
           S+N ++  +    G  + +L +L +    L  +    LLN+  L  + +S N L   M  
Sbjct: 213 SHNSIN-VVR---GPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYH 266

Query: 443 SF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLL 501
            F  +  LE LY+  N L   + +       L  LDL  N     +     +   L  L 
Sbjct: 267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 502 LRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEP 555
           L  N +   +         L  L LSHN       + L  +   VA        
Sbjct: 325 LDHNSIV-TLKLST--HHTLKNLTLSHNDWD---CNSLRALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (255), Expect = 2e-23
 Identities = 64/307 (20%), Positives = 111/307 (36%), Gaps = 28/307 (9%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           FA    ++ L +    I  L       +  L  L L  N++S S           L+   
Sbjct: 89  FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
           +   N++    D  +  + L+ L +S N+L+  +   ++ + SL +  +  N       L
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNL------L 198

Query: 150 NSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLL 209
           ++LA    +E L  S   N ++V         +L +L L + NL       L+   L  +
Sbjct: 199 STLAIPIAVEELDASH--NSINVVRGPVNV--ELTILKLQHNNLTDTAWL-LNYPGLVEV 253

Query: 210 DLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF--LHHLDVSNNNLTG 267
           DLS N L             +LE L+++NN       L         L  LD+S+N+L  
Sbjct: 254 DLSYNELE-KIMYHPFVKMQRLERLYISNNRLV---ALNLYGQPIPTLKVLDLSHNHLL- 308

Query: 268 KLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCI 327
            +  +      +L  + +  N     L  S      L  L L  N++       L     
Sbjct: 309 HVERNQP-QFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVA 364

Query: 328 SLGLLDL 334
              + D 
Sbjct: 365 RPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  101 bits (254), Expect = 3e-23
 Identities = 58/310 (18%), Positives = 112/310 (36%), Gaps = 20/310 (6%)

Query: 225 LRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYID 284
           L+ +     + +   +            +    +   N+ +  KLP  +    +++  ++
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 285 MSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIF 344
           ++D + E     +      +  L +  N     LP  +      L +L L  N+      
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL--SSL 132

Query: 345 PKYM--NLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDL 402
           P+ +  N  +L  L + NN      ++    +  L  L +S+N L+ H+   +    S L
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS-L 188

Query: 403 KVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGP 462
                    +  N+ + L    ++  L  S N ++           L  L LQ N+L+  
Sbjct: 189 FHA-----NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLT-D 240

Query: 463 IPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLG 522
               L     L+ +DL  N    ++ H   +   L  L +  N L   +      +  L 
Sbjct: 241 TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298

Query: 523 VLDLSHNRIS 532
           VLDLSHN + 
Sbjct: 299 VLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.8 bits (205), Expect = 5e-17
 Identities = 66/395 (16%), Positives = 139/395 (35%), Gaps = 55/395 (13%)

Query: 310 PKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIF--PKYMNLTQLEFLYLENNKFSGKI 367
           P+      + + L   C+     D+  +     ++   + + L   + +  +N+      
Sbjct: 5   PRQPEYKCIDSNLQYDCV---FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61

Query: 368 EEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSL 426
              L +  ++  L++++  +   I  +   ++  ++ L M    ++  +P  +  +   L
Sbjct: 62  AALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLL 119

Query: 427 NLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFS 484
            +L +  N LS      F N   L  L +  N+L   I    F++ ++L  L L  NR +
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT 178

Query: 485 GVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIML- 543
            V    I     L    +  N L       L     +  LD SHN I+  +   + + L 
Sbjct: 179 HVDLSLIPS---LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELT 229

Query: 544 -LWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNR 602
            L +  N      +L  +  +                +  N +  I              
Sbjct: 230 ILKLQHNNLTDTAWLLNYPGL----------VEVDLSY--NELEKIMYHPF--------- 268

Query: 603 YELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWI 661
                   ++ +  L +S N+L   +      +  ++ L+LS+N L   +  +      +
Sbjct: 269 ------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320

Query: 662 ESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLS 696
           E+L L HN +   +       + L N  +S N+  
Sbjct: 321 ENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 15/202 (7%)

Query: 30  VGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           V  + + +L   ++S   ++TL        +E LD S+N+I+             L+   
Sbjct: 180 VDLSLIPSLFHANVSYNLLSTLAIPI---AVEELDASHNSINVVRGPV----NVELTILK 232

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
           L+  N+       L N   L  +D+SYN+L   +      +  LE L + +N      L 
Sbjct: 233 LQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL--VALN 288

Query: 150 NSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLL 209
                   L+VL LS   N L     N     +L+ L L + ++  +     H   LK L
Sbjct: 289 LYGQPIPTLKVLDLSH--NHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT--LKNL 344

Query: 210 DLSGNNLVGDFPTWVLRNNTKL 231
            LS N+   +    + RN  + 
Sbjct: 345 TLSHNDWDCNSLRALFRNVARP 366

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 61/336 (18%), Positives = 121/336 (36%), Gaps = 42/336 (12%)

Query: 367 IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSL 426
           I+  L       ++ I       +        ++  K++      ++    A L +   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 427 NLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFS 484
            LL++++  +    T +F    +++ LY+  N++   +P  +F++   L  L L  N  S
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS 130

Query: 485 GVIPHQISESLT-LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIML 543
             +P  I  +   L  L +  N LE    +       L  L LS NR++      + + L
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-----HVDLSL 184

Query: 544 LWVAGNVYLHEPYLQFFSA-IFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNR 602
           +    +  +    L   +  I V  +   +NS             +  +L          
Sbjct: 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG------PVNVELTI-------- 230

Query: 603 YELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIE 662
                         L L  N LT      +    +  ++LSYN L   +   F  ++ +E
Sbjct: 231 --------------LKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275

Query: 663 SLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGL 698
            L +S+NRL   +      +  L   ++S N+L  +
Sbjct: 276 RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 31/123 (25%)

Query: 21  ASNILFFIVVGFANLTNLKILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGV 79
           ++N L  + +    +  LK+LDLS   +  ++    +   LE L L +N+I         
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-------- 331

Query: 80  CELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALL 139
                              L   L     LK L +S+N        A+    ++   A+ 
Sbjct: 332 ------------------TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVD 369

Query: 140 DNN 142
           D +
Sbjct: 370 DAD 372

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (286), Expect = 7e-27
 Identities = 102/513 (19%), Positives = 168/513 (32%), Gaps = 80/513 (15%)

Query: 33  ANLTNLKILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQ------------GV 79
            + T L+        +T +      +K+      +++    ++                 
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 80  CELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALL 139
           C  +   E  L  + +   LP+      HL+ L  S N L+  LP    +L SL      
Sbjct: 68  CLDRQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNN 122

Query: 140 DNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSF 199
                             LE L +S+  N L    E    +  LK++ + N +LK +P  
Sbjct: 123 LKALSD--------LPPLLEYLGVSN--NQLEKLPELQNSS-FLKIIDVDNNSLKKLPDL 171

Query: 200 LLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLD 259
                 L+ +    N L  + P   L+N   L A++  NNS      LP +    L  + 
Sbjct: 172 PPS---LEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKKLPDLPLS----LESIV 221

Query: 260 VSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELP 319
             NN L  +LPE     L  L  I   +N  +  LP     ++AL        +      
Sbjct: 222 AGNNILE-ELPELQN--LPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQ 277

Query: 320 APLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNE 379
                   SL  LD+S N F      +      L +L   +N+    + +   +   L E
Sbjct: 278 --------SLTFLDVSENIF--SGLSEL--PPNLYYLNASSNEIR-SLCDLPPS---LEE 321

Query: 380 LDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGP 439
           L++SNN L   +P         L+ L+ S   L   +P       +L  L V  N L   
Sbjct: 322 LNVSNNKLI-ELPALPPR----LERLIASFNHLA-EVPELP---QNLKQLHVEYNPLREF 372

Query: 440 MTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRF 499
                ++  L     +MNS    +P       NL  L +  N      P       ++  
Sbjct: 373 PDIPESVEDL-----RMNSHLAEVPELP---QNLKQLHVETNPLR-EFPDIPE---SVED 420

Query: 500 LLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS 532
           L +    +            +L      H+   
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (282), Expect = 2e-26
 Identities = 98/568 (17%), Positives = 170/568 (29%), Gaps = 123/568 (21%)

Query: 105 NLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLS 164
           + + L+      + L+  +P     + S        + +E            ++ V  L 
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLR 66

Query: 165 SRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWV 224
                            Q   L L N  L  +P    H   L+ L  S N+L  + P   
Sbjct: 67  D------------CLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLT-ELPEL- 109

Query: 225 LRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYID 284
            ++   L        + +    L       L +L VSNN L  KLPE        L  ID
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLPELQN--SSFLKIID 159

Query: 285 MSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIF 344
           + +N  +  LP                                SL  +    N    +  
Sbjct: 160 VDNNSLK-KLPDLPP----------------------------SLEFIAAGNNQL--EEL 188

Query: 345 PKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKV 404
           P+  NL  L  +Y +NN    K+ +   +   L  +   NN+L   +P  + N    L  
Sbjct: 189 PELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE-ELPE-LQNLPF-LTT 241

Query: 405 LLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIP 464
           +      LK  +P       SL  L+V +N L+       +L+ L+      + LS   P
Sbjct: 242 IYADNNLLK-TLPDLP---PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 297

Query: 465 IALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVL 524
                  NL  L+   N     +        +L  L +  N L  ++P    +L RL   
Sbjct: 298 -------NLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPPRLERL--- 342

Query: 525 DLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNG 584
             S N ++  +P               L + +++                        N 
Sbjct: 343 IASFNHLA-EVPELPQ----------NLKQLHVE-----------------------YNP 368

Query: 585 VYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSY 644
           +         VE +  N +        + +  L +  N L    P     ++   L ++ 
Sbjct: 369 LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE-FPDIPESVED--LRMNS 425

Query: 645 NFLSGSIPGSFSNLKWIESLDLSHNRLS 672
             +      +      +E     H+   
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (262), Expect = 7e-24
 Identities = 67/357 (18%), Positives = 119/357 (33%), Gaps = 52/357 (14%)

Query: 32  FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILR 91
             N + LKI+D+    +  L  L    +LE +    N +    E   +  L  L+     
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPE---LQNLPFLTAIYAD 203

Query: 92  GINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNS 151
             ++K  LPD   +   L+ +    N L       +  L  L  +   +N      L + 
Sbjct: 204 NNSLK-KLPDLPLS---LESIVAGNNIL--EELPELQNLPFLTTIYADNNLL--KTLPDL 255

Query: 152 LANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDL 211
             +   LE L +    N L+   E       L  L +       +     +   L  L+ 
Sbjct: 256 PPS---LEALNVRD--NYLTDLPELPQ---SLTFLDVSENIFSGLSELPPN---LYYLNA 304

Query: 212 SGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPE 271
           S N +              LE L ++NN      +LP      L  L  S N+L  ++PE
Sbjct: 305 SSNEIRSLCDLP-----PSLEELNVSNNKLI---ELPAL-PPRLERLIASFNHLA-EVPE 354

Query: 272 DMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGL 331
               + Q L  + +  N      P     ++ L       N+   E+P        +L  
Sbjct: 355 ----LPQNLKQLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVP----ELPQNLKQ 400

Query: 332 LDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS 388
           L +  N    + FP       +E L + + +     E     +++L +    ++   
Sbjct: 401 LHVETNPL--REFPD--IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (252), Expect = 1e-22
 Identities = 91/487 (18%), Positives = 154/487 (31%), Gaps = 91/487 (18%)

Query: 80  CELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALL 139
                L E +    N+   +P   +N+        ++++     P        +    L 
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 140 DNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSF 199
           D                +   L L++    LS   E       L+ L     +L  +P  
Sbjct: 67  DCL------------DRQAHELELNN--LGLSSLPELP---PHLESLVASCNSLTELPEL 109

Query: 200 LLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLD 259
                 L + + +   L    P         LE L ++NN      +L  +    L  +D
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQLEKLPELQNSSF--LKIID 159

Query: 260 VSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELP 319
           V NN+L  KLP+        L +I   +N+ E  LP  +  +  L  +    N+   +LP
Sbjct: 160 VDNNSLK-KLPDL----PPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLP 211

Query: 320 APLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNE 379
                  +SL  +    N    +  P+  NL  L  +Y +NN     + +   +   L  
Sbjct: 212 D----LPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEA 261

Query: 380 LDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGP 439
           L++ +N L+  +P    +    L  L +S+      +     N   LN  S     L   
Sbjct: 262 LNVRDNYLT-DLPELPQS----LTFLDVSENIFS-GLSELPPNLYYLNASSNEIRSLCDL 315

Query: 440 MTS------SFN--------LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSG 485
             S      S N           LE L    N L+  +P       NL  L +  N    
Sbjct: 316 PPSLEELNVSNNKLIELPALPPRLERLIASFNHLAE-VPELP---QNLKQLHVEYNPLR- 370

Query: 486 VIPHQIS--ESLT--------------LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN 529
             P      E L               L+ L +  N L  + P+    +  L    ++  
Sbjct: 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDL---RMNSE 426

Query: 530 RISGSIP 536
           R+     
Sbjct: 427 RVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 94.7 bits (236), Expect = 1e-20
 Identities = 80/462 (17%), Positives = 144/462 (31%), Gaps = 92/462 (19%)

Query: 254 FLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNN 313
           FL      ++NLT ++P +    ++       + + +E   P   GE + +   RL    
Sbjct: 12  FLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 314 FSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSN 373
                             L+L+         P+      LE L    N  + ++ E   +
Sbjct: 70  ------------DRQAHELELNNLGL--SSLPE--LPPHLESLVASCNSLT-ELPELPQS 112

Query: 374 SNELNELDISNNLLSGHIPHW---------------IGNFSSDLKVLLMSKMFLKGNIPA 418
              L   + +   LS   P                 + N S  LK++ +    LK  +P 
Sbjct: 113 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF-LKIIDVDNNSLK-KLPD 170

Query: 419 QLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDL 478
                 SL  ++   N L        NL  L  +Y   NSL   +P       +L ++  
Sbjct: 171 LP---PSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVA 222

Query: 479 RDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSC 538
            +N        ++     L  +    N L+  +P+    L  L V D     +     S 
Sbjct: 223 GNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSL 279

Query: 539 LTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFM 598
             + +     +     P           ++     S        N + S+      +E  
Sbjct: 280 TFLDVSENIFSGLSELP----------PNLYYLNAS-------SNEIRSLCDLPPSLEE- 321

Query: 599 TKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNL 658
                             L++S N+L   +P+    L+   L  S+N L+  +P    NL
Sbjct: 322 ------------------LNVSNNKLI-ELPALPPRLER--LIASFNHLA-EVPELPQNL 359

Query: 659 KWIESLDLSHNRLSG--QVPPRLTELNFLSNFNVSFNNLSGL 698
           K    L + +N L     +P  + +L   S+          L
Sbjct: 360 KQ---LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL 398

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 81.2 bits (201), Expect = 2e-16
 Identities = 77/410 (18%), Positives = 146/410 (35%), Gaps = 59/410 (14%)

Query: 293 YLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQ 352
           ++         L       +N + E+P        S      + + +     P      +
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQRE 59

Query: 353 LEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFL 412
           +    L +               + +EL+++N  LS  +P    +    L+ L+ S   L
Sbjct: 60  MAVSRLRDCL-----------DRQAHELELNNLGLS-SLPELPPH----LESLVASCNSL 103

Query: 413 KGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSN 472
              +P    +  SL + + +   LS           LE+L +  N L   +P  L  SS 
Sbjct: 104 T-ELPELPQSLKSLLVDNNNLKALSD------LPPLLEYLGVSNNQLEK-LP-ELQNSSF 154

Query: 473 LITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS 532
           L  +D+ +N     +P        L F+    N LE ++P  L  L  L  +   +N + 
Sbjct: 155 LKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK 208

Query: 533 GSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYN-STFHFGHYGNGVYSIFPQ 591
                 L++  +    N  L E             +      +T +  +  N + ++   
Sbjct: 209 KLPDLPLSLESIVAGNN-ILEEL----------PELQNLPFLTTIYADN--NLLKTLPDL 255

Query: 592 LVKVEFMTKNRYELYNGSN-IKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGS 650
              +E +      L +     + +  LD+S N  + G+     +L    LN S N +  S
Sbjct: 256 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS-GLSELPPNLYY--LNASSNEIR-S 311

Query: 651 IPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIP 700
           +     +L   E L++S+N+L  ++P     L  L     SFN+L+ +  
Sbjct: 312 LCDLPPSL---EELNVSNNKLI-ELPALPPRLERL---IASFNHLAEVPE 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  112 bits (281), Expect = 6e-26
 Identities = 73/372 (19%), Positives = 124/372 (33%), Gaps = 51/372 (13%)

Query: 20  NASNILFFIVVGFANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQ 77
           +      +       L N KI+      +  L    L   + +E L+L+   I       
Sbjct: 35  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------ 88

Query: 78  GVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA 137
                            I             ++ L + +N +    P     +  L  L 
Sbjct: 89  ----------------EID---TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129

Query: 138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNML-SVKTENFLPTFQLKVLGLPNYNLKVI 196
           L  N+   +       N  KL  L +S+  N L  ++ + F  T  L+ L L +  L  +
Sbjct: 130 LERNDLS-SLPRGIFHNTPKLTTLSMSN--NNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

Query: 197 PSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLH 256
              L+    L   ++S N L        L     +E L  ++NS      +    +  L 
Sbjct: 187 DLSLIPS--LFHANVSYNLLS------TLAIPIAVEELDASHNSIN---VVRGPVNVELT 235

Query: 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG 316
            L + +NNLT      +      L+ +D+S N  E  +     +M+ L  L +  N    
Sbjct: 236 ILKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV- 291

Query: 317 ELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNE 376
            L         +L +LDLS N+    +        +LE LYL++N               
Sbjct: 292 ALNL-YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT--- 346

Query: 377 LNELDISNNLLS 388
           L  L +S+N   
Sbjct: 347 LKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  104 bits (261), Expect = 2e-23
 Identities = 70/391 (17%), Positives = 132/391 (33%), Gaps = 56/391 (14%)

Query: 99  LPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKL 158
           +   L+       + I              TL + + +   ++          L +  ++
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 159 EVLLLSSRTNMLS-VKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQ-YDLKLLDLSGNNL 216
           E+L L+     +  + T  F     ++ L +    ++ +P  +      L +L L  N+L
Sbjct: 78  ELLNLND--LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 217 VGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPK---TKHDFLHHLDVSNNNLTGKLPEDM 273
               P  +  N  KL  L ++NN+     ++          L +L +S+N LT  +    
Sbjct: 136 S-SLPRGIFHNTPKLTTLSMSNNNLE---RIEDDTFQATTSLQNLQLSSNRLT-HVDLS- 189

Query: 274 GIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLD 333
             ++  L + ++S N       S++    A+  L    N+ +  +  P+      L +L 
Sbjct: 190 --LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNV---ELTILK 238

Query: 334 LSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPH 393
           L  NN         +N   L  + L  N+    +         L  L ISNN L      
Sbjct: 239 LQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV----- 291

Query: 394 WIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLY 453
                                 +        +L +L +S N L     +      LE+LY
Sbjct: 292 ---------------------ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330

Query: 454 LQMNSLSGPIPIALFRSSNLITLDLRDNRFS 484
           L  NS+   + ++      L  L L  N + 
Sbjct: 331 LDHNSIV-TLKLSTH--HTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 97.7 bits (243), Expect = 3e-21
 Identities = 64/310 (20%), Positives = 112/310 (36%), Gaps = 28/310 (9%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           FA    ++ L +    I  L       +  L  L L  N++S S           L+   
Sbjct: 95  FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 153

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
           +   N++    D  +  + L+ L +S N+L+  +   ++ + SL +  +  N       L
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNL------L 204

Query: 150 NSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLL 209
           ++LA    +E L  S   N ++V         +L +L L + NL       L+   L  +
Sbjct: 205 STLAIPIAVEELDASH--NSINVVRGPVNV--ELTILKLQHNNLTDTAWL-LNYPGLVEV 259

Query: 210 DLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF--LHHLDVSNNNLTG 267
           DLS N L             +LE L+++NN       L         L  LD+S+N+L  
Sbjct: 260 DLSYNELE-KIMYHPFVKMQRLERLYISNNRLV---ALNLYGQPIPTLKVLDLSHNHLL- 314

Query: 268 KLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCI 327
            +  +      +L  + +  N     L  S      L  L L  N++       L     
Sbjct: 315 HVERNQP-QFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVA 370

Query: 328 SLGLLDLSGN 337
              + D   +
Sbjct: 371 RPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.2 bits (208), Expect = 6e-17
 Identities = 55/279 (19%), Positives = 104/279 (37%), Gaps = 23/279 (8%)

Query: 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG 316
           H+D+   ++     +   I L     +   ++       + +   + +  L L       
Sbjct: 33  HIDMQTQDVYFGFED---ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE- 88

Query: 317 ELPAPLLTGCISLGLLDLSGNNFY---GQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSN 373
           E+         ++  L +  N        +F    N+  L  L LE N  S        N
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---QNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSE 433
           + +L  L +SNN L   I       ++ L+ L +S   L  ++   L+   SL   +VS 
Sbjct: 146 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP--SLFHANVSY 201

Query: 434 NCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISE 493
           N L    ++     ++E L    NS++  +   +     L  L L+ N  +      +  
Sbjct: 202 NLL----STLAIPIAVEELDASHNSINV-VRGPVN--VELTILKLQHNNLTDT--AWLLN 252

Query: 494 SLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS 532
              L  + L  N LE  + +   +++RL  L +S+NR+ 
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 82.7 bits (204), Expect = 2e-16
 Identities = 63/396 (15%), Positives = 136/396 (34%), Gaps = 72/396 (18%)

Query: 309 LPKNNFSGELPAPLLTGCISLGL-LDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKI 367
            P+      + + L   C+   + +D+   + Y     + + L   + +  +N+      
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFG--FEDITLNNQKIVTFKNSTMRKLP 67

Query: 368 EEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL-NHGSL 426
              L +  ++  L++++  +                            I         ++
Sbjct: 68  AALLDSFRQVELLNLNDLQIE--------------------------EIDTYAFAYAHTI 101

Query: 427 NLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFS 484
             L +  N +       F N+  L  L L+ N LS  +P  +F +   L TL + +N   
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE 160

Query: 485 GVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLL 544
            +       + +L+ L L  N L   +   L  +  L   ++S+N +S ++   + +  L
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS-TLAIPIAVEEL 216

Query: 545 WVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNR-Y 603
             + N       +                              +  +L  ++ +  N   
Sbjct: 217 DASHN------SINVVRG------------------------PVNVELTILK-LQHNNLT 245

Query: 604 ELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIE 662
           +     N   +V +DLS N+L   +      + ++  L +S N L  ++      +  ++
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 304

Query: 663 SLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGL 698
            LDLSHN L   V     + + L N  +  N++  L
Sbjct: 305 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.1 bits (187), Expect = 2e-14
 Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 15/202 (7%)

Query: 30  VGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           V  + + +L   ++S   ++TL        +E LD S+N+I+             L+   
Sbjct: 186 VDLSLIPSLFHANVSYNLLSTLAIPI---AVEELDASHNSINVVRGPV----NVELTILK 238

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
           L+  N+       L N   L  +D+SYN+L   +      +  LE L + +N      L 
Sbjct: 239 LQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL--VALN 294

Query: 150 NSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLL 209
                   L+VL LS   N L     N     +L+ L L + ++  +     H   LK L
Sbjct: 295 LYGQPIPTLKVLDLSH--NHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT--LKNL 350

Query: 210 DLSGNNLVGDFPTWVLRNNTKL 231
            LS N+   +    + RN  + 
Sbjct: 351 TLSHNDWDCNSLRALFRNVARP 372

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 62/354 (17%), Positives = 125/354 (35%), Gaps = 49/354 (13%)

Query: 358 LENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFS----SDLKVLLMSKMFLK 413
              N    + E    +SN   +    +  +          F     ++ K++      ++
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 414 GNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-S 471
               A L +   + LL++++  +    T +F    +++ LY+  N++   +P  +F++  
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVP 123

Query: 472 NLITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNR 530
            L  L L  N  S  +P  I  +   L  L +  N LE    +       L  L LS NR
Sbjct: 124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 531 ISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSA-IFVGSIGTYYN--STFHFGHYGNGVYS 587
           ++      + + L+    +  +    L   +  I V  +   +N  +             
Sbjct: 183 LT-----HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-------- 229

Query: 588 IFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFL 647
           +  +L                        L L  N LT      +    +  ++LSYN L
Sbjct: 230 VNVELTI----------------------LKLQHNNLTD-TAWLLNYPGLVEVDLSYNEL 266

Query: 648 SGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD 701
              +   F  ++ +E L +S+NRL   +      +  L   ++S N+L  +  +
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERN 319

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  110 bits (277), Expect = 3e-25
 Identities = 66/316 (20%), Positives = 109/316 (34%), Gaps = 47/316 (14%)

Query: 228 NTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSD 287
           N     L +  +  T    LP      +  L + +NNLT  LP        +L  +++S 
Sbjct: 39  NNGNAVLNVGESGLT---TLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVSG 90

Query: 288 NRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKY 347
           N+    LP     +  L     P  +               L  L + GN       P  
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQL--TSLPV- 138

Query: 348 MNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLM 407
                L+ L + +N+ +  +    S    L +L   NN L+  +P         L+ L +
Sbjct: 139 -LPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSG----LQELSV 188

Query: 408 SKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIAL 467
           S   L  ++P        L  L    N L+   +     S L+ L +  N L+  +P+  
Sbjct: 189 SDNQLA-SLPTLP---SELYKLWAYNNRLT---SLPALPSGLKELIVSGNRLTS-LPVLP 240

Query: 468 FRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLS 527
              S L  L +  NR +  +P   S    L  L +  N L  ++P  L  L     ++L 
Sbjct: 241 ---SELKELMVSGNRLTS-LPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 528 HNRISGSIPSCLTIML 543
            N +S          +
Sbjct: 293 GNPLS-ERTLQALREI 307

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (266), Expect = 5e-24
 Identities = 73/349 (20%), Positives = 111/349 (31%), Gaps = 49/349 (14%)

Query: 33  ANLTNLKILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILR 91
                  +L++   G+TTL   L    ++  L +  NN++             L    + 
Sbjct: 37  CLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPA-----LPPELRTLEVS 89

Query: 92  GINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNS 151
           G  +   LP     L  L +       L           + L  L +  N    T L   
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQL--TSLPVL 139

Query: 152 LANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDL 211
                 L+ L +S   N L+          +L  L   N  L  +P        L+ L +
Sbjct: 140 PPG---LQELSVSD--NQLASLPALP---SELCKLWAYNNQLTSLPMLPSG---LQELSV 188

Query: 212 SGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPE 271
           S N L    PT      ++L  L+  NN  T    LP      L  L VS N LT  LP 
Sbjct: 189 SDNQLA-SLPTLP----SELYKLWAYNNRLT---SLPALPSG-LKELIVSGNRLTS-LPV 238

Query: 272 DMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGL 331
                  +L  + +S NR    LP        L+ L + +N  +  LP   L    S   
Sbjct: 239 LPS----ELKELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLP-ESLIHLSSETT 288

Query: 332 LDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNEL 380
           ++L GN    +       +T          +F          +  L+  
Sbjct: 289 VNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.2 bits (247), Expect = 1e-21
 Identities = 84/370 (22%), Positives = 131/370 (35%), Gaps = 49/370 (13%)

Query: 156 SKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNN 215
           +   VL +    + L+   +       +  L +P+ NL  +P+       L+ L++SGN 
Sbjct: 40  NGNAVLNVGE--SGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPE---LRTLEVSGNQ 92

Query: 216 LVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGI 275
           L    P  +     +L               LP      L  L +  N LT  LP     
Sbjct: 93  LT-SLPV-LPPGLLELSIFSNPLTHLP---ALPSG----LCKLWIFGNQLT-SLPVLPP- 141

Query: 276 ILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLS 335
               L  + +SDN+    LP+   E   L  L    N  +  LP  L +    L  L +S
Sbjct: 142 ---GLQELSVSDNQLAS-LPALPSE---LCKLWAYNNQLT-SLP-MLPS---GLQELSVS 189

Query: 336 GNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWI 395
            N       P     ++L  L+  NN+ +  +    S    L EL +S N L+  +P   
Sbjct: 190 DNQL--ASLPT--LPSELYKLWAYNNRLT-SLPALPSG---LKELIVSGNRLT-SLPVLP 240

Query: 396 GNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQ 455
                 LK L++S   L  ++P        L  LSV  N L+    S  +LSS   + L+
Sbjct: 241 SE----LKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292

Query: 456 MNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQL 515
            N LS     AL   ++         RF         E+  L   L   ++L      + 
Sbjct: 293 GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREGEP 350

Query: 516 CQLRRLGVLD 525
               R  +  
Sbjct: 351 APADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.2 bits (208), Expect = 6e-17
 Identities = 67/354 (18%), Positives = 108/354 (30%), Gaps = 54/354 (15%)

Query: 32  FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILR 91
              L  L I       +  L        L  L +  N ++             L E  + 
Sbjct: 100 PPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTSLPV-----LPPGLQELSVS 149

Query: 92  GINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNS 151
              +   LP      S L  L    NQL+ +LP   + L  L     + +N      L S
Sbjct: 150 DNQLA-SLPA---LPSELCKLWAYNNQLT-SLPMLPSGLQELS----VSDN-----QLAS 195

Query: 152 L-ANHSKLEVLLLSSRTNMLSVKTENFLPTF--QLKVLGLPNYNLKVIPSFLLHQYDLKL 208
           L    S+L  L   +  N L       LP     LK L +    L  +P        LK 
Sbjct: 196 LPTLPSELYKLWAYN--NRL-----TSLPALPSGLKELIVSGNRLTSLPVLPSE---LKE 245

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPK--TKHDFLHHLDVSNNNLT 266
           L +SGN L     T +    + L +L +  N  T   +LP+          +++  N L+
Sbjct: 246 LMVSGNRL-----TSLPMLPSGLLSLSVYRNQLT---RLPESLIHLSSETTVNLEGNPLS 297

Query: 267 GKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGC 326
            +        +           RF+    S+  E +AL             L        
Sbjct: 298 -ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD------WLVPAREGEP 350

Query: 327 ISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNEL 380
                  + G       F  +++       ++++  F  +I   L+   E   L
Sbjct: 351 APADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEAL 404

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.7 bits (186), Expect = 3e-14
 Identities = 60/261 (22%), Positives = 98/261 (37%), Gaps = 51/261 (19%)

Query: 446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN 505
            +    L +  + L+  +P  L   +++ TL + DN  +  +P    E   LR L + GN
Sbjct: 39  NNGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPALPPE---LRTLEVSGN 91

Query: 506 YLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFV 565
            L   +P     L  L +       +  ++PS L    LW+ GN       L     +  
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCK--LWIFGN------QLTSLPVLP- 140

Query: 566 GSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSN--------IKYMVGL 617
                            N + S+     ++        +L+  +N           +  L
Sbjct: 141 -------PGLQELSVSDNQLASLPALPSELC-------KLWAYNNQLTSLPMLPSGLQEL 186

Query: 618 DLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPP 677
            +S NQL   +P+   +L    L    N L+ S+P   S LK    L +S NRL+  +P 
Sbjct: 187 SVSDNQLAS-LPTLPSELY--KLWAYNNRLT-SLPALPSGLK---ELIVSGNRLT-SLPV 238

Query: 678 RLTELNFLSNFNVSFNNLSGL 698
             +EL  L    VS N L+ L
Sbjct: 239 LPSELKEL---MVSGNRLTSL 256

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.1 bits (161), Expect = 3e-11
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 69/249 (27%)

Query: 469 RSSNLITLDLRDNRFSGVIPHQISESLT------------------LRFLLLRGNYLEGQ 510
            ++    L++ ++  +  +P  +   +T                  LR L + GN L   
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-S 95

Query: 511 IPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGT 570
           +P     L  L +       +  ++PS L  + +                          
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWI-------------------------- 128

Query: 571 YYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYN-GSNIKYMVGLDLSCNQLTGGIP 629
                     +GN + S+      ++ ++ +  +L +  +    +  L    NQLT  +P
Sbjct: 129 ----------FGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLP 177

Query: 630 SEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFN 689
                LQ   L++S N L+ S+P   S L     L   +NRL+  +P   + L  L    
Sbjct: 178 MLPSGLQE--LSVSDNQLA-SLPTLPSEL---YKLWAYNNRLT-SLPALPSGLKEL---I 227

Query: 690 VSFNNLSGL 698
           VS N L+ L
Sbjct: 228 VSGNRLTSL 236

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 617 LDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVP 676
           L++  + LT  +P  +    I  L +  N L+ S+P     L+   +L++S N+L+  +P
Sbjct: 45  LNVGESGLT-TLPDCLPA-HITTLVIPDNNLT-SLPALPPELR---TLEVSGNQLT-SLP 97

Query: 677 PRLTELNFLSNFNVSFNNLSGLIP 700
                L  LS F+    +L  L  
Sbjct: 98  VLPPGLLELSIFSNPLTHLPALPS 121

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 617 LDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVP 676
           L +S N+LT  +P    +L+   L +S N L+ S+P   S L     L +  N+L+ ++P
Sbjct: 226 LIVSGNRLTS-LPVLPSELKE--LMVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLP 277

Query: 677 PRLTELNFLSNFNVSFNNLSGLIPDKGQ 704
             L  L+  +  N+  N LS       +
Sbjct: 278 ESLIHLSSETTVNLEGNPLSERTLQALR 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 37/192 (19%)

Query: 514 QLCQLRRLGVLDLSHNRISGSIPSCL--TIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTY 571
           + C      VL++  + ++ ++P CL   I  L +  N       L    A+    + T 
Sbjct: 35  RACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDN------NLTSLPALP-PELRTL 86

Query: 572 YNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSN-----IKYMVGLDLSCNQLTG 626
             S       GN + S+      +  ++       N           +  L +  NQLT 
Sbjct: 87  EVS-------GNQLTSLPVLPPGLLELS----IFSNPLTHLPALPSGLCKLWIFGNQLT- 134

Query: 627 GIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLS 686
            +P     LQ   L++S N L+ S+P   S L     L   +N+L+  +P   + L  L 
Sbjct: 135 SLPVLPPGLQE--LSVSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPMLPSGLQEL- 186

Query: 687 NFNVSFNNLSGL 698
             +VS N L+ L
Sbjct: 187 --SVSDNQLASL 196

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 617 LDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLS---G 673
           L +S N+LT  +P     L    L++  N L+  +P S  +L    +++L  N LS    
Sbjct: 246 LMVSGNRLTS-LPMLPSGLLS--LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301

Query: 674 QVPPRLTELNFLSNFNVSFNNLSGLIP 700
           Q    +T     S   + F+      P
Sbjct: 302 QALREITSAPGYSGPIIRFDMAGASAP 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (260), Expect = 3e-24
 Identities = 64/314 (20%), Positives = 115/314 (36%), Gaps = 30/314 (9%)

Query: 231 LEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRF 290
           L  +  ++       ++PK        LD+ NN +T ++ +     L+ L  + + +N+ 
Sbjct: 33  LRVVQCSDLGLE---KVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 291 EGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM-- 348
               P +   +  L  L L KN    ELP  +     +L  L +  N        K +  
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK---TLQELRVHENEI--TKVRKSVFN 142

Query: 349 NLTQLEFLYLENNKF-SGKIEEG-LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLL 406
            L Q+  + L  N   S  IE G      +L+ + I++  ++  IP   G   S L  L 
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPS-LTELH 198

Query: 407 MSKMFLKGNIPAQLLNH-GSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIP 464
           +    +   + A  L    +L  L +S N +S     S  N   L  L+L  N L   +P
Sbjct: 199 LDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VP 256

Query: 465 IALFRSSNLITLDLRDNRFSGV-----IPHQISESLT-LRFLLLRGNYLEGQI--PNQLC 516
             L     +  + L +N  S +      P   +        + L  N ++     P+   
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 517 QLRRLGVLDLSHNR 530
            +     + L + +
Sbjct: 317 CVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 9e-21
 Identities = 67/337 (19%), Positives = 111/337 (32%), Gaps = 68/337 (20%)

Query: 36  TNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
            +  +LDL    IT ++      LKNL  L L  N IS                      
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS---------------------- 89

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
            I    P     L  L+ L +S NQL   LP       +L+ L + +N        +   
Sbjct: 90  KIS---PGAFAPLVKLERLYLSKNQLK-ELPEK--MPKTLQELRVHENEIT-KVRKSVFN 142

Query: 154 NHSKLEVLLLSS-RTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLS 212
             +++ V+ L +       ++   F    +L  + + + N+  IP  L     L  L L 
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS--LTELHLD 200

Query: 213 GNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPED 272
           GN +            TK++A      S  G   L       L  L +S N+++  +   
Sbjct: 201 GNKI------------TKVDA-----ASLKG---LNN-----LAKLGLSFNSIS-AVDNG 234

Query: 273 MGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFS-----GELPAPLLTGCI 327
                  L  + +++N+    +P  + + K +  + L  NN S        P    T   
Sbjct: 235 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 328 SLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNK 362
           S   + L  N              +     + L N K
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.4 bits (225), Expect = 8e-20
 Identities = 54/277 (19%), Positives = 94/277 (33%), Gaps = 37/277 (13%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           F NL NL  L L    I+ +       L  LE L LS N +    E       K L E  
Sbjct: 72  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM----PKTLQELR 127

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTL--PSAITTLTSLEYLALLDNNF---- 143
           +    I          L+ + V+++  N L  +     A   +  L Y+ + D N     
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187

Query: 144 EGTFLLNSLANHSKLEVLLLSSRTNML-SVKTENFLPTFQLKVLGLPNYNLKVIPSFLL- 201
           +G            L  L L    N +  V   +      L  LGL   ++  + +  L 
Sbjct: 188 QGLP--------PSLTELHLDG--NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 202 HQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN--------SFTGNLQLPKTKHD 253
           +   L+ L L+ N LV   P   L ++  ++ ++L NN         F       K    
Sbjct: 238 NTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS- 294

Query: 254 FLHHLDVSNNNLT-GKLPEDMGIILQKLLYIDMSDNR 289
               + + +N +   ++       +     + + + +
Sbjct: 295 -YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.7 bits (179), Expect = 6e-14
 Identities = 72/355 (20%), Positives = 112/355 (31%), Gaps = 95/355 (26%)

Query: 331 LLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEG-LSNSNELNELDISNNLL 387
           LLDL  N             NL  L  L L NNK S KI  G  +   +L  L +S N L
Sbjct: 56  LLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQL 112

Query: 388 SGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NL 446
                                       +P ++    +L  L V EN ++    S F  L
Sbjct: 113 K--------------------------ELPEKMPK--TLQELRVHENEITKVRKSVFNGL 144

Query: 447 SSLEHLYLQMNSL-SGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
           + +  + L  N L S  I    F+    L  + + D   +  IP  +  SLT   L L G
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLT--ELHLDG 201

Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIF 564
           N +       L  L  L  L LS N IS ++ +             +L E +L       
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANT------PHLRELHLN------ 248

Query: 565 VGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQL 624
                             N +  +   L                ++ KY+  + L  N +
Sbjct: 249 -----------------NNKLVKVPGGL----------------ADHKYIQVVYLHNNNI 275

Query: 625 T-------GGIPSEIGDLQIRGLNLSYNFLSGSI--PGSFSNLKWIESLDLSHNR 670
           +                    G++L  N +      P +F  +    ++ L + +
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 37/191 (19%)

Query: 351 TQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM 410
                L L+NNK +   +    N   L+ L + NN +S                      
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS---------------------- 89

Query: 411 FLKGNIPAQLLNH-GSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFR 469
                I          L  L +S+N L           +L+ L +  N ++  +  ++F 
Sbjct: 90  ----KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITK-VRKSVFN 142

Query: 470 S-SNLITLDLRDNRF-SGVIPHQISESLT-LRFLLLRGNYLEGQIPNQLCQLRRLGVLDL 526
             + +I ++L  N   S  I +   + +  L ++ +    +   IP  L     L  L L
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHL 199

Query: 527 SHNRISGSIPS 537
             N+I+  + +
Sbjct: 200 DGNKIT-KVDA 209

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 617 LDLSCNQLTGGIPSEI--GDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQ 674
           L L  N++T  + +    G   +  L LS+N +S    GS +N   +  L L++N+L  +
Sbjct: 197 LHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 675 VPPRLTELNFLSNFNVSFNNLSGL 698
           VP  L +  ++    +  NN+S +
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAI 278

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  105 bits (265), Expect = 3e-24
 Identities = 85/413 (20%), Positives = 145/413 (35%), Gaps = 50/413 (12%)

Query: 30  VGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           +    L  L  LD     IT + G+ KL  L  L  + NNI+    SQ      NL+   
Sbjct: 36  ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQ----NTNLTYLA 91

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
                +  +L   +  L+ L  L+   N+L+  L   ++    L YL    N        
Sbjct: 92  CDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT----E 141

Query: 150 NSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLL 209
             ++++++L  L       +  +         QL  L      +  +         L  L
Sbjct: 142 IDVSHNTQLTELDCHLNKKITKLDVTPQT---QLTTLDCSFNKITELDVSQNKL--LNRL 196

Query: 210 DLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKL 269
           +   NN+        L  N +L  L  ++N  T   ++  T    L + D S N LT +L
Sbjct: 197 NCDTNNIT----KLDLNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNPLT-EL 248

Query: 270 PEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISL 329
                  L KL  +              +     LI+ +        ++    +T    L
Sbjct: 249 DVS---TLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR---KIKELDVTHNTQL 299

Query: 330 GLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS- 388
            LLD                  +L +LYL N + + +++  +S++ +L  L   N  +  
Sbjct: 300 YLLDCQAAGITELDLS---QNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD 353

Query: 389 ----GHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLS 437
               G IP    NF ++ + + M K  L  N    L    S +LL    N ++
Sbjct: 354 FSSVGKIPALNNNFEAEGQTITMPKETLTNN---SLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.7 bits (215), Expect = 5e-18
 Identities = 85/450 (18%), Positives = 152/450 (33%), Gaps = 74/450 (16%)

Query: 37  NLKILDLSGCGITTLQGLT--KLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN 94
           N      +   +     ++  +L  L +LD   ++I+  +   G+ +L  L++ I    N
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNN 75

Query: 95  IKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLAN 154
           I   L   L   ++L  L    N+L+  L   +T LT L YL    N          ++ 
Sbjct: 76  IT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKL----DVSQ 125

Query: 155 HSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGN 214
           +  L  L  +   N L+    +     QL  L   + N K+    +  Q  L  LD S N
Sbjct: 126 NPLLTYLNCAR--NTLTEIDVSHNT--QLTELDC-HLNKKITKLDVTPQTQLTTLDCSFN 180

Query: 215 NLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMG 274
            +        +  N  L  L    N+ T   +L   ++  L  LD S+N LT ++     
Sbjct: 181 KIT----ELDVSQNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLT-EIDVTP- 231

Query: 275 IILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDL 334
             L +L Y D S N         +  +  L  L   + +   E+    LT    L     
Sbjct: 232 --LTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLL-EID---LTHNTQLIYFQA 282

Query: 335 SGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHW 394
            G            + TQL  L  +    + +++  LS + +L  L ++N  L+      
Sbjct: 283 EGCRK--IKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT------ 331

Query: 395 IGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYL 454
                                +         L  LS     +    +S   + +L + + 
Sbjct: 332 --------------------ELDVSHNT--KLKSLSCVNAHIQD-FSSVGKIPALNNNFE 368

Query: 455 QMNSLSGPIPIALFRSSNLITLDLRDNRFS 484
                       L  ++N +T+ +  +   
Sbjct: 369 AEGQTITMPKETL--TNNSLTIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 26/247 (10%)

Query: 20  NASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGV 79
           +         +     T L  LD S   IT L  +++ K L  L+   NNI+       +
Sbjct: 154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNIT----KLDL 208

Query: 80  CELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALL 139
            +   L+        +   +   +  L+ L   D S N L+  L   ++TL+ L  L  +
Sbjct: 209 NQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCI 262

Query: 140 DNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSF 199
             +         L ++++L             +K  +     QL +L      +  +   
Sbjct: 263 QTDLLE----IDLTHNTQLIYFQAE---GCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315

Query: 200 LLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLD 259
              +  L  L L+   L  +     + +NTKL++L   N        + K     L++  
Sbjct: 316 QNPK--LVYLYLNNTELT-ELD---VSHNTKLKSLSCVNAHIQDFSSVGKIPA--LNNNF 367

Query: 260 VSNNNLT 266
            +     
Sbjct: 368 EAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.5 bits (173), Expect = 7e-13
 Identities = 74/434 (17%), Positives = 131/434 (30%), Gaps = 53/434 (12%)

Query: 104 KNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLL 163
            N +                   + TLTSL+     +++      +  +   + L  L+ 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLD---CHNSSITD---MTGIEKLTGLTKLIC 71

Query: 164 SSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTW 223
           +S  N ++  T +      L  L   +  L  +   +     L  L+   N L       
Sbjct: 72  TS--NNIT--TLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL---- 121

Query: 224 VLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYI 283
            +  N  L  L    N+ T   ++  + +  L  LD   N    KL         +L  +
Sbjct: 122 DVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTP---QTQLTTL 175

Query: 284 DMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQI 343
           D S N+        + + K L  L    NN + +L    L   I L  LD S N      
Sbjct: 176 DCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKL--TE 226

Query: 344 FPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLK 403
                 LTQL +     N  +      LS    L  L      L   I       + + +
Sbjct: 227 IDVT-PLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQTDLL-EID-----LTHNTQ 276

Query: 404 VLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPI 463
           ++       +      + ++  L LL      ++    S      L +LYL    L+  +
Sbjct: 277 LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS--QNPKLVYLYLNNTELTE-L 333

Query: 464 PIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIP-----NQLCQL 518
            ++    + L +L   +          + +   L                    N L   
Sbjct: 334 DVSHN--TKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETLTNNSLTIA 389

Query: 519 RRLGVLDLSHNRIS 532
               +LD   N ++
Sbjct: 390 VSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 58/410 (14%), Positives = 131/410 (31%), Gaps = 62/410 (15%)

Query: 295 PSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLE 354
             S  ++  L  L    ++ + ++    +     L  L  + NN            T L 
Sbjct: 35  TISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLICTSNNITTLDLS---QNTNLT 88

Query: 355 FLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG 414
           +L  ++NK +      L+    L  L+   N L+             L  L  ++  L  
Sbjct: 89  YLACDSNKLTNLDVTPLTK---LTYLNCDTNKLTKLDVSQNPL----LTYLNCARNTLT- 140

Query: 415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLI 474
            I   + ++  L  L    N     +  +   + L  L    N ++    + + ++  L 
Sbjct: 141 EID--VSHNTQLTELDCHLNKKITKLDVT-PQTQLTTLDCSFNKITE---LDVSQNKLLN 194

Query: 475 TLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS 534
            L+   N  + +    +++++ L FL    N L  +I   +  L +L   D S N ++  
Sbjct: 195 RLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-E 247

Query: 535 IPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVK 594
           +       L      ++  +  L                             +   QL+ 
Sbjct: 248 LDVSTLSKLT----TLHCIQTDLLEIDL------------------------THNTQLIY 279

Query: 595 VEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGS 654
            +     + +  + ++   +  LD     +T    S+   L    L L+   L+  +   
Sbjct: 280 FQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY--LYLNNTELT-ELD-- 334

Query: 655 FSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQ 704
            S+   ++SL   +  +       + ++  L+N   +      +  +   
Sbjct: 335 VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLT 382

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 59/468 (12%), Positives = 126/468 (26%), Gaps = 89/468 (19%)

Query: 231 LEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRF 290
             +             + + +   L  LD  N+++T  +       L  L  +  + N  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEK--LTGLTKLICTSNNI 76

Query: 291 EGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNL 350
                  + +   L +L    N  +  L    +T    L  L+   N             
Sbjct: 77  TTL---DLSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDV---SQN 126

Query: 351 TQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM 410
             L +L    N  +   E  +S++ +L ELD   N     +                   
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD------------------ 165

Query: 411 FLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRS 470
                    +     L  L  S N ++    S      L  L    N+++  + +     
Sbjct: 166 ---------VTPQTQLTTLDCSFNKITELDVS--QNKLLNRLNCDTNNITK-LDLNQN-- 211

Query: 471 SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNR 530
             L  LD   N+ + +    ++    L +     N L     + L +L  L         
Sbjct: 212 IQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTD 265

Query: 531 ISG-SIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIF 589
           +    +     ++     G   + E  +   + +++                        
Sbjct: 266 LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC--QAA---------------- 307

Query: 590 PQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSG 649
             + +++            S    +V L L+  +LT    S    L+   L+     +  
Sbjct: 308 -GITELDL-----------SQNPKLVYLYLNNTELTELDVSHNTKLKS--LSCVNAHIQ- 352

Query: 650 SIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSG 697
               S   +  + +   +  +        LT  +     +    +  G
Sbjct: 353 DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 8/122 (6%)

Query: 20  NASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGV 79
            A        +   + T L +LD    GIT L  L++   L  L L+   ++       V
Sbjct: 281 QAEGCRKIKELDVTHNTQLYLLDCQAAGITELD-LSQNPKLVYLYLNNTELT----ELDV 335

Query: 80  CELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALL 139
                L        +I+      +  +  L     +  Q   T+P    T  SL      
Sbjct: 336 SHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSP 392

Query: 140 DN 141
           D 
Sbjct: 393 DL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 40/304 (13%), Positives = 96/304 (31%), Gaps = 30/304 (9%)

Query: 400 SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSL 459
            +    + +   ++           +L  L    + ++  MT    L+ L  L    N++
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MTGIEKLTGLTKLICTSNNI 76

Query: 460 SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLR 519
           +    + L +++NL  L    N+ + +    ++    L +L    N L     +Q   L 
Sbjct: 77  TT---LDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLDVSQNPLLT 130

Query: 520 RLGVLDLSHNRISG-SIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHF 578
               L+ + N ++   +     +  L    N  + +  +   + +               
Sbjct: 131 ---YLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC---------- 177

Query: 579 GHYGNGVYSI-FPQLVKVE--FMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL 635
               N +  +   Q   +       N     + +    +  LD S N+LT     ++  L
Sbjct: 178 --SFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE---IDVTPL 232

Query: 636 -QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNN 694
            Q+   + S N L+     + S L  +  +      +      +L          +   +
Sbjct: 233 TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 695 LSGL 698
           ++  
Sbjct: 293 VTHN 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (254), Expect = 1e-23
 Identities = 54/328 (16%), Positives = 106/328 (32%), Gaps = 51/328 (15%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
             N    KI  ++   +            N++ LDLS N +S  S               
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS--------------- 50

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
                        L   + L++L++S N L       + +L++L  L L +N       +
Sbjct: 51  ----------AADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNY------V 92

Query: 150 NSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYD-LKL 208
             L     +E L  ++  N +S  + +       K + L N  + ++          ++ 
Sbjct: 93  QELLVGPSIETLHAAN--NNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFT---GNLQLPKTKHDFLHHLDVSNNNL 265
           LDL  N +       +  ++  LE L L  N      G +   K     L  LD+S+N L
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK-----LKTLDLSSNKL 203

Query: 266 TGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTG 325
              +  +       + +I + +N+    +  ++   + L    L  N F         + 
Sbjct: 204 A-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 326 CISLGLLDLSGNNFYGQIFPKYMNLTQL 353
              +  +             +   +  L
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (251), Expect = 3e-23
 Identities = 71/359 (19%), Positives = 130/359 (36%), Gaps = 48/359 (13%)

Query: 99  LPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKL 158
           + +  +N +  K+  ++ + L   L S   +  +++ L L  N          LA  +KL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 159 EVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVG 218
           E+L LSS  N+L           +     L                 L+ LDL+ N +  
Sbjct: 61  ELLNLSS--NVLYE-----TLDLE----SLST---------------LRTLDLNNNYVQ- 93

Query: 219 DFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQ 278
                 L     +E L   NN+ +   ++  ++     ++ ++NN +T  L +       
Sbjct: 94  -----ELLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRS 144

Query: 279 KLLYIDMSDNRFEG-YLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGN 337
           ++ Y+D+  N  +             L  L L  N    ++          L  LDLS N
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLSSN 201

Query: 338 NFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGN 397
                + P++ +   + ++ L NNK    IE+ L  S  L   D+  N            
Sbjct: 202 KL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-- 257

Query: 398 FSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSEN--CLSGPMTSSFNLSSLEHLYL 454
           FS + +V  ++K  +K  +  Q     ++  L       C   P   +  L +L H + 
Sbjct: 258 FSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 72/359 (20%), Positives = 125/359 (34%), Gaps = 48/359 (13%)

Query: 174 TENFLPTFQLKVLGLPNYNLKVIPSFLLHQ-YDLKLLDLSGNNLVGDFPTWVLRNNTKLE 232
            E      + K+  + + +LK   + L    +++K LDLSGN L        L   TKLE
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLE 61

Query: 233 ALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEG 292
            L L++N     L L       L  LD++NN +  +L          +  +  ++N    
Sbjct: 62  LLNLSSNVLYETLDLESLST--LRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNIS- 112

Query: 293 YLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPK-YMNLT 351
            +  S G  +    + L  N  +  L          +  LDL  N      F +   +  
Sbjct: 113 RVSCSRG--QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 352 QLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMF 411
            LE L L+ N     ++  +  +  L  LD+S+N L+                       
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVVFAK-LKTLDLSSNKLA----------------------- 204

Query: 412 LKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLS-GPIPIALFRS 470
               +  +  +   +  +S+  N L     +     +LEH  L+ N    G +     ++
Sbjct: 205 ---FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 471 SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQ-LRRLGVLDLSH 528
             + T+  +  +    +  Q  E  T+  L   G Y    +P      L  LG     H
Sbjct: 262 QRVQTVAKQTVKK---LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 51/265 (19%), Positives = 81/265 (30%), Gaps = 24/265 (9%)

Query: 32  FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCEL--------- 82
            A  T L++L+LS   +     L  L  L  LDL+ N +        +  L         
Sbjct: 54  LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113

Query: 83  ------KNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG-TLPSAITTLTSLEY 135
                 +      L    I           S ++ LD+  N++          +  +LE+
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 136 LALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKV 195
           L L  N       +      +KL+ L LSS  N L+     F     +  + L N  L +
Sbjct: 174 LNLQYNFIYD---VKGQVVFAKLKTLDLSS--NKLAFMGPEFQSAAGVTWISLRNNKLVL 228

Query: 196 IPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFL 255
           I   L    +L+  DL GN             N +++ +              +     L
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 256 HHLDVSNNNLTGKLPEDMGIILQKL 280
            H           LP      L  L
Sbjct: 289 GHY---GAYCCEDLPAPFADRLIAL 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.4 bits (238), Expect = 2e-21
 Identities = 53/258 (20%), Positives = 91/258 (35%), Gaps = 18/258 (6%)

Query: 277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSG 336
             +     ++D+  +  L S       +  L L  N  S ++ A  L     L LL+LS 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 337 NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIG 396
           N  Y        +L+ L  L L NN         L     +  L  +NN +S  +     
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS--CS 117

Query: 397 NFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF--NLSSLEHLYL 454
                 K + ++   +             +  L +  N +     +    +  +LEHL L
Sbjct: 118 RGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 455 QMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQ 514
           Q N +   +   +   + L TLDL  N+ +  +  +   +  + ++ LR N L   I   
Sbjct: 177 QYNFIYD-VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 515 LCQLRRLGVLDLSHNRIS 532
           L   + L   DL  N   
Sbjct: 233 LRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.9 bits (208), Expect = 9e-18
 Identities = 43/213 (20%), Positives = 87/213 (40%), Gaps = 14/213 (6%)

Query: 328 SLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLL 387
              +  ++ ++    +     +   ++ L L  N  S      L+   +L  L++S+N+L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 388 SGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLS 447
                  + + S+ L+ L      L  N   +LL   S+  L  + N +S    S     
Sbjct: 71  Y-ETLD-LESLST-LRTL-----DLNNNYVQELLVGPSIETLHAANNNIS--RVSCSRGQ 120

Query: 448 SLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNY 506
             +++YL  N ++    +     S +  LDL+ N    V   +++ S   L  L L+ N+
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 507 LEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCL 539
           +   +  Q+    +L  LDLS N+++  +    
Sbjct: 181 IY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEF 210

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 57/311 (18%), Positives = 100/311 (32%), Gaps = 27/311 (8%)

Query: 416 IPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLI 474
           I     N     +  V+++ L   + S   +  +++ L L  N LS      L   + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 475 TLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS 534
            L+L  N     +   +    TLR L L  NY++     +L     +  L  ++N IS  
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 535 IPSCLTIML--LWVAGNVYLHEPYLQFFSAIFVGSIGTYYN--STFHFGHYGNGVYSIFP 590
           +          +++A N       L       V  +    N   T +F         +  
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE-------LAA 166

Query: 591 QLVKVE--FMTKNR-YELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNF 646
               +E   +  N  Y++        +  LDLS N+L   +  E      +  ++L  N 
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNK 225

Query: 647 LSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFA 706
           L   I  +    + +E  DL  N        R           V+   +  L     +  
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 707 TFDESSYRGNL 717
           T     + G  
Sbjct: 284 TVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 627 GIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFL 685
            I     +  + +   ++ + L  ++     +   ++ LDLS N LS      L     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 686 SNFNVSFNNLSGLIP 700
              N+S N L   + 
Sbjct: 61  ELLNLSSNVLYETLD 75

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (262), Expect = 1e-23
 Identities = 90/471 (19%), Positives = 170/471 (36%), Gaps = 36/471 (7%)

Query: 36  TNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCE-LKNLSEFILRG 92
              K L LS   I+ L+   ++ L  L  L LS+N I   S    V    ++L    +  
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSH 109

Query: 93  INIKGHLPDCLKNLSHLKVLDISYNQL-SGTLPSAITTLTSLEYLALLDNNFEGTFLLNS 151
             ++ ++      ++ L+ LD+S+N      +      LT L +L L    F    LL  
Sbjct: 110 NRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP- 165

Query: 152 LANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFL---------LH 202
              H  L  +LL   +  +       L      VL L  +   +    +         L 
Sbjct: 166 -VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 203 QYDLKLLDLSGN---NLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLD 259
             ++KL D +       + +        N  L+ +  T        Q        + +L+
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF--FWPRPVEYLN 282

Query: 260 VSNNNLTGKLPEDMGII----LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFS 315
           + N  +T ++  +        L+ L+   + +  F     +       +    L  ++ +
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-T 341

Query: 316 GELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFS--GKIEEGLSN 373
             +         S   L+ + N F   +F     L +L+ L L+ N      K+     N
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSE 433
            + L  LD+S N L+ H       ++  + VL +S   L G++   L     + +L +  
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHN 459

Query: 434 NCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRF 483
           N +        +L +L+ L +  N L   +P  +F   ++L  + L DN +
Sbjct: 460 NRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.8 bits (207), Expect = 6e-17
 Identities = 82/449 (18%), Positives = 147/449 (32%), Gaps = 51/449 (11%)

Query: 107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
              K L +S N +S      I+ L+ L  L L  N       + SL  H           
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR------IRSLDFHV---------- 95

Query: 167 TNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLR 226
                     FL    L+ L + +  L+ I    +    L+ LDLS N+           
Sbjct: 96  ----------FLFNQDLEYLDVSHNRLQNISCCPMAS--LRHLDLSFNDFDVLPVCKEFG 143

Query: 227 NNTKLEALFLTNNSFT-GNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDM 285
           N TKL  L L+   F   +L      H     LD+ + ++ G   E + I    +L++  
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 286 SDNR------FEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCIS-LGLLDLSGNN 338
             N                 ++  +             L        +  + L  +    
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 339 FYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNE-----LNELDISNNLLSGHIPH 393
                  ++     +E+L + N   + +I+      +E     L    + N +       
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKE 322

Query: 394 WIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSG-PMTSSFNLSSLEHL 452
            + +  +++ + ++S             +  S   L+ ++N  +         L  L+ L
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

Query: 453 YLQMNSLSGPIPIALFRSSNLITLDLRDNRF----SGVIPHQISESLTLRFLLLRGNYLE 508
            LQ N L          + N+ +L+  D       S       + + ++  L L  N L 
Sbjct: 383 ILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 509 GQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
           G +   L    ++ VLDL +NRI  SIP 
Sbjct: 442 GSVFRCL--PPKVKVLDLHNNRIM-SIPK 467

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 65/381 (17%), Positives = 133/381 (34%), Gaps = 26/381 (6%)

Query: 32  FANLTNLKILDLSGCGITTL---QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
              + +L+ LDLS      L   +    L  L  L LS        +   V  L      
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCIL 175

Query: 89  I-LRGINIKGHLPDCLKNLSH--LKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEG 145
           + L   +IKG   + L+  +   L ++    +  S  +  ++  L  L+   +  N+   
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 146 TFLLNSLANHSKLEVLLLSSRTNM-----LSVKTENFLPTFQLKVLGLPNYNLKVIPSFL 200
             L+  L+  ++   LL  +  ++      SVK   F     ++ L + N  +       
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 201 LHQYD------LKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF 254
              Y       L +  +  N +       +     ++    L+ +       +       
Sbjct: 296 EFTYSETALKSLMIEHVK-NQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFE--GYLPSSIGEMKALIFLRLPKN 312
              L+ + N  T          L++L  + +  N  +    +      M +L  L +  N
Sbjct: 355 FTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413

Query: 313 NFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLS 372
           + +            S+ +L+LS N   G +F       +++ L L NN+    I + ++
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVT 470

Query: 373 NSNELNELDISNNLLSGHIPH 393
           +   L EL++++N L   +P 
Sbjct: 471 HLQALQELNVASNQLK-SVPD 490

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 82/486 (16%), Positives = 159/486 (32%), Gaps = 76/486 (15%)

Query: 205 DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNN 264
           +L++L LS N +       V   N  LE L +++N       +       L HLD+S N+
Sbjct: 77  ELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFND 132

Query: 265 LTGKLPEDMGI-ILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLL 323
               LP       L KL ++ +S  +F   L         L  + L   ++  +      
Sbjct: 133 FD-VLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETES 190

Query: 324 TGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSN-------SNE 376
               +  +L L  +          M++  L  L L N K + +  + L            
Sbjct: 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250

Query: 377 LNELDISNNLLSGHIPHWIGNF--SSDLKVLLMSKMFLKGNIPAQLLNHG-----SLNLL 429
           L  + + +   +      +  F     ++ L +  + +   I  +   +      SL + 
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310

Query: 430 SVSENCLSGPMTSSFN-LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIP 488
            V          + ++  + +    L ++       +     S+   L+   N F+  + 
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 489 HQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAG 548
              S    L+ L+L+ N L+          + +  L+     ++ S+ S         A 
Sbjct: 371 QGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAE 428

Query: 549 NV---YLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYEL 605
           ++    L    L                             S+F  L             
Sbjct: 429 SILVLNLSSNMLT---------------------------GSVFRCLP------------ 449

Query: 606 YNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIP-GSFSNLKWIES 663
                +K    LDL  N++   IP ++  L  ++ LN++ N L  S+P G F  L  ++ 
Sbjct: 450 ---PKVKV---LDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQY 501

Query: 664 LDLSHN 669
           + L  N
Sbjct: 502 IWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 78/454 (17%), Positives = 156/454 (34%), Gaps = 65/454 (14%)

Query: 258 LDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSI-GEMKALIFLRLPKNNFSG 316
           L +S N+++ +L       L +L  + +S NR    L   +    + L +L +  N    
Sbjct: 57  LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ- 113

Query: 317 ELPAPLLTGCISLGLLDLSGNNF----YGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLS 372
            +    +    SL  LDLS N+F      + F    NLT+L FL L   KF       ++
Sbjct: 114 NISCCPMA---SLRHLDLSFNDFDVLPVCKEFG---NLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 373 NSNE-LNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNI------PAQLLNHGS 425
           + +     LD+ +  + G     +   ++ +  L+     L              L   +
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRS---SNLITLDLRDNR 482
           + L   +   L   ++      +L ++ LQ    +    + LF+      +  L++ +  
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 483 FSGVIPHQISESL-----TLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
            +  I  +          +L    ++                 + +  LS +        
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 538 CLTIM----LLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLV 593
           C         L    NV+    +    +   + ++    N                    
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG--------------LKNFF 393

Query: 594 KVEFMTKNRYELYNGSN----------------IKYMVGLDLSCNQLTGGIPSEIGDLQI 637
           KV  MTKN   L                      + ++ L+LS N LTG +   +   ++
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP-KV 452

Query: 638 RGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRL 671
           + L+L  N +  SIP   ++L+ ++ L+++ N+L
Sbjct: 453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 54/254 (21%), Positives = 91/254 (35%), Gaps = 35/254 (13%)

Query: 18  FNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGL----TKLKNLEALDLSYNNISGS 73
                ++  F       +  L I +L+       +      T LK+L    +        
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-F 319

Query: 74  SESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSL 133
           S+         ++  +L   +       C  + S    L+ + N  + ++    +TL  L
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 134 EYLALLDNNF---EGTFL--------------LNSLANH---------SKLEVLLLSSRT 167
           + L L  N         L              LNSL +H           + VL LSS  
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS-- 437

Query: 168 NMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRN 227
           NML+      LP  ++KVL L N  +  IP  + H   L+ L+++ N L    P  V   
Sbjct: 438 NMLTGSVFRCLPP-KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDR 495

Query: 228 NTKLEALFLTNNSF 241
            T L+ ++L +N +
Sbjct: 496 LTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.0 bits (140), Expect = 9e-09
 Identities = 53/377 (14%), Positives = 105/377 (27%), Gaps = 49/377 (12%)

Query: 349 NLTQLEFLYLENNKFSGKIEEGLSNSN-ELNELDISNNLLSGHIPHWIGNFSSDLKVLLM 407
            L++L  L L +N+    ++  +   N +L  LD+S+N L                    
Sbjct: 74  FLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ------------------- 113

Query: 408 SKMFLKGNIPAQLLNHGSLNLLSVSENCL-SGPMTSSF-NLSSLEHLYLQMNSL-SGPIP 464
                  NI    +   SL  L +S N     P+   F NL+ L  L L         + 
Sbjct: 114 -------NISCCPM--ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 465 IALFRSSNLITLDLRDNRFSGVIPHQISESLT--LRFLLLRGNYLEGQIPNQLCQLRRLG 522
                  + I LDL      G     +    T  L  +    +    Q+   +  L  L 
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 523 VLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYG 582
           + ++  N  +          L      + +   +++      V     ++     + +  
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 583 NGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTG---GIPSEIGDLQIRG 639
           N   +      +           Y+ + +K ++   +           + S   ++ I  
Sbjct: 285 NLTITERIDREEFT---------YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI-- 333

Query: 640 LNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLI 699
             LS +           +      L+ + N  +  V    + L  L    +  N L    
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393

Query: 700 PDKGQFATFDESSYRGN 716
                            
Sbjct: 394 KVALMTKNMSSLETLDV 410

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.6 bits (241), Expect = 5e-22
 Identities = 57/218 (26%), Positives = 89/218 (40%), Gaps = 13/218 (5%)

Query: 32  FANLTNLKILDLSGCGITTL----QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSE 87
           F  LT L  L LS  G++      Q      +L+ LDLS+N +   S       L+ L  
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS--NFLGLEQLEH 105

Query: 88  FILRGINIKGHLPDC--LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEG 145
              +  N+K  + +     +L +L  LDIS+             L+SLE L +  N+F+ 
Sbjct: 106 LDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164

Query: 146 TFLLNSLANHSKLEVLLLSSRTNML-SVKTENFLPTFQLKVLGLPNYNLKVIPSFLL-HQ 203
            FL +       L  L LS     L  +    F     L+VL + + N   + +F     
Sbjct: 165 NFLPDIFTELRNLTFLDLSQ--CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 204 YDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSF 241
             L++LD S N+++      +    + L  L LT N F
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.8 bits (226), Expect = 4e-20
 Identities = 52/262 (19%), Positives = 95/262 (36%), Gaps = 36/262 (13%)

Query: 36  TNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
           ++   L+L    + +L      KL  L  L LS N +S                      
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-------------- 73

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
                        + LK LD+S+N +  T+ S    L  LE+L    +N +     +   
Sbjct: 74  ---------DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLP-NYNLKVIPSFLLHQ-YDLKLLDL 211
           +   L  L + S T+        F     L+VL +  N   +     +  +  +L  LDL
Sbjct: 124 SLRNLIYLDI-SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 212 SGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLH---HLDVSNNNLTGK 268
           S   L          + + L+ L +++N+F     L    +  L+    LD S N++   
Sbjct: 183 SQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF---SLDTFPYKCLNSLQVLDYSLNHIMTS 238

Query: 269 LPEDMGIILQKLLYIDMSDNRF 290
             +++      L +++++ N F
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 64/313 (20%), Positives = 100/313 (31%), Gaps = 70/313 (22%)

Query: 37  NLKILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINI 95
           +   +  +  G+T++  G+    +   L+L  N +             +L          
Sbjct: 8   SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQ------------SLP--------- 44

Query: 96  KGHLPDCLKNLSHLKVLDISYNQLS--GTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
                     L+ L  L +S N LS  G    +    TSL+YL L  N      + ++  
Sbjct: 45  ----HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFL 98

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSG 213
              +LE L      + L   +E     F      L N               L  LD+S 
Sbjct: 99  GLEQLEHLDFQH--SNLKQMSEF--SVFL----SLRN---------------LIYLDISH 135

Query: 214 NNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQ------LPKTKHDFLHHLDVSNNNLTG 267
            +        +    + LE L +  NSF  N        L       L  LD+S   L  
Sbjct: 136 THTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-----LTFLDLSQCQLE- 188

Query: 268 KLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTG-C 326
           +L       L  L  ++MS N F          + +L  L    N+         L    
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFP 247

Query: 327 ISLGLLDLSGNNF 339
            SL  L+L+ N+F
Sbjct: 248 SSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 55/282 (19%), Positives = 94/282 (33%), Gaps = 37/282 (13%)

Query: 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFS- 315
            +  ++  LT  +P     I      +++  N+ +        ++  L  L L  N  S 
Sbjct: 11  EIRCNSKGLT-SVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 316 GELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGL-SNS 374
               +    G  SL  LDLS N     +   ++ L QLE L  +++      E  +  + 
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 375 NELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSVSE 433
             L  LDIS+                                   + N   SL +L ++ 
Sbjct: 126 RNLIYLDISHTHTR--------------------------VAFNGIFNGLSSLEVLKMAG 159

Query: 434 N-CLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQI 491
           N      +   F  L +L  L L    L    P A    S+L  L++  N F  +     
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

Query: 492 SESLTLRFLLLRGNYLEGQIPNQLCQL-RRLGVLDLSHNRIS 532
               +L+ L    N++      +L      L  L+L+ N  +
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 57/269 (21%), Positives = 91/269 (33%), Gaps = 46/269 (17%)

Query: 107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
           S    L++  N+L          LT L  L+L  N                         
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL----------------------- 64

Query: 167 TNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLR 226
            +     +++   T  LK L L    +  + S  L    L+ LD   +NL       V  
Sbjct: 65  -SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 227 NNTKLEALFLTNNS--------FTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQ 278
           +   L  L +++          F G   L       L  L ++ N+       D+   L+
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNG---LSS-----LEVLKMAGNSFQENFLPDIFTELR 175

Query: 279 KLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNN 338
            L ++D+S  + E   P++   + +L  L +  NNF   L         SL +LD S N+
Sbjct: 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNH 234

Query: 339 FYGQIFPK---YMNLTQLEFLYLENNKFS 364
                  K       + L FL L  N F+
Sbjct: 235 I--MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 9/164 (5%)

Query: 378 NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLS 437
            E+  ++  L+  +P       S    L +    L+            L  LS+S N LS
Sbjct: 10  TEIRCNSKGLT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 438 G---PMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISES 494
                  S F  +SL++L L  N +   +         L  LD + +    +    +  S
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 495 LT-LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
           L  L +L +   +           L  L VL ++ N    +   
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 617 LDLSCNQLTG---GIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSG 673
           L LS N L+       S+ G   ++ L+LS+N +  ++  +F  L+ +E LD  H+ L  
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK- 114

Query: 674 QVPPR--LTELNFLSNFNVSFNNLSGLIPD 701
           Q+        L  L   ++S  +       
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 617 LDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVP 676
           +  +   LT  +P+ I       L L  N L     G F  L  +  L LS N LS +  
Sbjct: 12  IRCNSKGLTS-VPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69

Query: 677 PRLT--ELNFLSNFNVSFNNLSGL 698
              +      L   ++SFN +  +
Sbjct: 70  CSQSDFGTTSLKYLDLSFNGVITM 93

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 47/263 (17%)

Query: 36  TNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
           +N + L+L    I  +Q      L +LE L L  N+I              +        
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR------------QIE------- 115

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
                       L+ L  L++  N L+     A   L+ L  L L +N  E +    +  
Sbjct: 116 ------VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN 168

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSG 213
               L  L L     +  +    F   F LK L L   N+K +P+       L+ L++SG
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL-TPLVGLEELEMSG 227

Query: 214 NNLVGDFPTWVLRNNTKLEALFLTNNS--------FTGNLQLPKTKHDFLHHLDVSNNNL 265
           N+   +         + L+ L++ N+         F G   L       L  L++++NNL
Sbjct: 228 NHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG---LAS-----LVELNLAHNNL 278

Query: 266 TGKLPEDMGIILQKLLYIDMSDN 288
           +  LP D+   L+ L+ + +  N
Sbjct: 279 S-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 62/287 (21%), Positives = 99/287 (34%), Gaps = 48/287 (16%)

Query: 182 QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN-- 239
           Q   +      L  +P  +    + + L+L  NN+         R+   LE L L  N  
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI 111

Query: 240 ------SFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGY 293
                 +F G   L       L+ L++ +N LT  +P      L KL  + + +N  E  
Sbjct: 112 RQIEVGAFNG---LAS-----LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESI 162

Query: 294 LPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQL 353
              +   + +L+ L L +      +      G  +L  L+L   N   +  P    L  L
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGL 220

Query: 354 EFLYLENNKFSGKIEEG-LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFL 412
           E L +  N F  +I  G     + L +L + N+ +S  I      F   L  L       
Sbjct: 221 EELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIER--NAFD-GLASL------- 268

Query: 413 KGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSL 459
                   LN    NL S+  +  +        L  L  L+L  N  
Sbjct: 269 ------VELNLAHNNLSSLPHDLFTP-------LRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.6 bits (199), Expect = 4e-16
 Identities = 46/215 (21%), Positives = 72/215 (33%), Gaps = 36/215 (16%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           F  L +L  L+L    +T +       L  L  L L  N I             ++    
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE------------SIP--- 163

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDIS-YNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
                           +  L  LD+    +L      A   L +L+YL L   N +    
Sbjct: 164 ----------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--- 210

Query: 149 LNSLANHSKLEVLLLSSRTNML-SVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQ-YDL 206
           + +L     LE L +S   N    ++  +F     LK L + N  + +I          L
Sbjct: 211 MPNLTPLVGLEELEMSG--NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 207 KLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSF 241
             L+L+ NNL    P  +      L  L L +N +
Sbjct: 269 VELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 6e-15
 Identities = 57/216 (26%), Positives = 89/216 (41%), Gaps = 24/216 (11%)

Query: 332 LDLSGNNF---YGQIFPKYMNLTQLEFLYLENNKFSGKIEEG-LSNSNELNELDISNNLL 387
           L+L  NN        F    +L  LE L L  N    +IE G  +    LN L++ +N L
Sbjct: 80  LNLMENNIQMIQADTFR---HLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWL 135

Query: 388 SGHIPHWIGNFSSDLKVLLMSKMFLKGN----IPAQLLNH-GSLNLLSVSE-NCLSGPMT 441
           +          S  L+ L     +L+ N    IP+   N   SL  L + E   L     
Sbjct: 136 TVIPSGAFEYLSK-LREL-----WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 442 SSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFL 500
            +F  L +L++L L M ++   +P  L     L  L++  N F  + P       +L+ L
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 501 LLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
            +  + +     N    L  L  L+L+HN +S S+P
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLP 282

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 6e-15
 Identities = 53/226 (23%), Positives = 84/226 (37%), Gaps = 8/226 (3%)

Query: 307 LRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPK-YMNLTQLEFLYLENNKFSG 365
           L L +NN    + A        L +L L  N+   QI    +  L  L  L L +N  + 
Sbjct: 80  LNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLT- 136

Query: 366 KIEEG-LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH- 423
            I  G     ++L EL + NN +   IP +  N    L  L + ++     I        
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 424 GSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRF 483
            +L  L++    +      +  L  LE L +  N      P +    S+L  L + +++ 
Sbjct: 196 FNLKYLNLGMCNIKDMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

Query: 484 SGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN 529
           S +  +      +L  L L  N L     +    LR L  L L HN
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 64/301 (21%), Positives = 103/301 (34%), Gaps = 58/301 (19%)

Query: 374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSE 433
           SN+ +++  +   LS  +P       S+ + L + +  ++        +   L +L +  
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 434 NCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQI 491
           N +      +F  L+SL  L L  N L+  IP   F   S L  L LR+N     IP   
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 492 SESLT-LRFL-LLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGN 549
              +  L  L L     LE         L  L  L+L    I   +P+        +   
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--------LTPL 217

Query: 550 VYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGS 609
           V L E  +               N   HF     G +     L K               
Sbjct: 218 VGLEELEM-------------SGN---HFPEIRPGSFHGLSSLKK--------------- 246

Query: 610 NIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSH 668
                  L +  +Q++    +    L  +  LNL++N LS      F+ L+++  L L H
Sbjct: 247 -------LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

Query: 669 N 669
           N
Sbjct: 300 N 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 617 LDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVP 676
           L+L    +   +P+    + +  L +S N      PGSF  L  ++ L + ++++S  + 
Sbjct: 201 LNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIE 258

Query: 677 PR-LTELNFLSNFNVSFNNLSGLIPD 701
                 L  L   N++ NNLS L  D
Sbjct: 259 RNAFDGLASLVELNLAHNNLSSLPHD 284

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 617 LDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVP 676
           +  +   L+  +P  I     R LNL  N +      +F +L  +E L L  N +  Q+ 
Sbjct: 59  VVCTRRGLSE-VPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIE 115

Query: 677 PR-LTELNFLSNFNVSFNNLSGLIPD 701
                 L  L+   +  N L+ +   
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSG 141

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 91.2 bits (227), Expect = 4e-21
 Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 30  VGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           +  A + +L  + L+   +T L G+    N++ L ++  + +  +    +  L NL    
Sbjct: 38  ITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN---PISGLSNLERLR 94

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
           + G ++       L  L+ L +LDIS++    ++ + I TL  +  + L  N       +
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG--AITDI 152

Query: 150 NSLANHSKLEVLLLSS 165
             L    +L+ L +  
Sbjct: 153 MPLKTLPELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 30/107 (28%)

Query: 16  WLFNNASNILFFIVVGFANLTNLKILDLSGC-GITTLQGLTKLKNLEALDLSYNNISGSS 74
            + ++       I+     L  +  +DLS    IT +  L  L  L++L++ ++ +    
Sbjct: 118 DISHS--AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH--- 172

Query: 75  ESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG 121
                              + +G     +++   L  L      + G
Sbjct: 173 -------------------DYRG-----IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 5/138 (3%)

Query: 349 NLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMS 408
               ++ L + N   +      +S  + L  L I    ++      +   +S L +L +S
Sbjct: 64  YAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTS-LTLLDIS 120

Query: 409 KMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALF 468
                 +I  ++     +N + +S N     +     L  L+ L +Q + +     I  F
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDF 180

Query: 469 RSSNLITLDLRDNRFSGV 486
               L  L        G 
Sbjct: 181 --PKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 26/186 (13%), Positives = 61/186 (32%), Gaps = 33/186 (17%)

Query: 349 NLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMS 408
            +  L ++ L N   +  +  G+  ++ + +L I+N   +            +   +   
Sbjct: 42  QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT------------NYNPI--- 84

Query: 409 KMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIAL 467
                    + L N   L  L +    ++     +   L+SL  L +  ++    I   +
Sbjct: 85  ---------SGLSN---LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 468 FRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLS 527
                + ++DL  N     I   +     L+ L ++ + +       +    +L  L   
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAF 189

Query: 528 HNRISG 533
              I G
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 32/184 (17%)

Query: 349 NLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMS 408
                    L  +  +   E  +++   L  + ++N  ++            DL  +   
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVT------------DLTGI--- 62

Query: 409 KMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALF 468
                        N   +  L+++    +        LS+LE L +    ++      L 
Sbjct: 63  ---------EYAHN---IKDLTINNIHATN-YNPISGLSNLERLRIMGKDVTSDKIPNLS 109

Query: 469 RSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSH 528
             ++L  LD+  +     I  +I+    +  + L  N     I   L  L  L  L++  
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQF 168

Query: 529 NRIS 532
           + + 
Sbjct: 169 DGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSG 336
           +  L YI +++        + I     +  L +   + +   P   ++G  +L  L + G
Sbjct: 43  MNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNP---ISGLSNLERLRIMG 97

Query: 337 NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNN 385
            +      P    LT L  L + ++     I   ++   ++N +D+S N
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 24/234 (10%), Positives = 68/234 (29%), Gaps = 81/234 (34%)

Query: 33  ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG 92
           +         L       +    ++ +L  + L+  N++                     
Sbjct: 20  STFKAYLNGLLGQSSTANIT-EAQMNSLTYITLANINVT--------------------- 57

Query: 93  INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSL 152
            ++ G     ++   ++K L I+    +    + I+ L++LE L ++  +   +  + +L
Sbjct: 58  -DLTG-----IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDV-TSDKIPNL 108

Query: 153 ANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLS 212
           +  + L +L +S                                                
Sbjct: 109 SGLTSLTLLDIS------------------------------------------------ 120

Query: 213 GNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLT 266
            ++   D     +    K+ ++ L+ N    ++  P      L  L++  + + 
Sbjct: 121 -HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 617 LDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV 675
           LD+S +     I ++I  L ++  ++LSYN     I      L  ++SL++  + +    
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYR 175

Query: 676 PPRLTELNFLSNFNVSFNNLSGL 698
              + +   L+        + G 
Sbjct: 176 G--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 15/91 (16%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 609 SNIKYMVGL---DLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESL 664
           + I+Y   +    ++    T    + I  L  +  L +    ++     + S L  +  L
Sbjct: 60  TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 665 DLSHNRLSGQVPPRLTELNFLSNFNVSFNNL 695
           D+SH+     +  ++  L  +++ ++S+N  
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.6 bits (238), Expect = 6e-21
 Identities = 60/263 (22%), Positives = 99/263 (37%), Gaps = 47/263 (17%)

Query: 36  TNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
           TN ++L+L    I  ++      L++LE L LS N+I              +        
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR------------TIE------- 104

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
                       L++L  L++  N+L+     A   L+ L+ L L +N  E +    +  
Sbjct: 105 ------IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSG 213
               L  L L     +  +    F     L+ L L   NL+ IP+       L  LDLSG
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL-TPLIKLDELDLSG 216

Query: 214 NNLVGDFPTWVLRNNTKLEALFLTNN--------SFTGNLQLPKTKHDFLHHLDVSNNNL 265
           N+L         +    L+ L++  +        +F     L       L  +++++NNL
Sbjct: 217 NHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN---LQS-----LVEINLAHNNL 267

Query: 266 TGKLPEDMGIILQKLLYIDMSDN 288
           T  LP D+   L  L  I +  N
Sbjct: 268 T-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 57/277 (20%), Positives = 100/277 (36%), Gaps = 48/277 (17%)

Query: 192 NLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN--------SFTG 243
           NL+ +P  +    + +LL+L  N +         ++   LE L L+ N        +F G
Sbjct: 54  NLREVPDGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110

Query: 244 NLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKA 303
              L       L+ L++ +N LT  +P    + L KL  + + +N  E     +   + +
Sbjct: 111 ---LAN-----LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 304 LIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKF 363
           L  L L +      +      G  +L  L+L+  N   +  P    L +L+ L L  N  
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHL 219

Query: 364 SGKIEEG-LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLN 422
           S  I  G       L +L +  + +   I      F  +L+ L               +N
Sbjct: 220 S-AIRPGSFQGLMHLQKLWMIQSQIQ-VIER--NAF-DNLQSL-------------VEIN 261

Query: 423 HGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSL 459
               NL  +  +  +        L  LE ++L  N  
Sbjct: 262 LAHNNLTLLPHDLFTP-------LHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 49/215 (22%), Positives = 79/215 (36%), Gaps = 36/215 (16%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           F  L NL  L+L    +TT+       L  L+ L L  N I             ++    
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE------------SIP--- 152

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDIS-YNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
                           +  L+ LD+    +LS     A   L++L YL L   N      
Sbjct: 153 ----------SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--- 199

Query: 149 LNSLANHSKLEVLLLSSRTNML-SVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQ-YDL 206
           + +L    KL+ L LS   N L +++  +F     L+ L +    ++VI          L
Sbjct: 200 IPNLTPLIKLDELDLSG--NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 207 KLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSF 241
             ++L+ NNL    P  +      LE + L +N +
Sbjct: 258 VEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 6e-15
 Identities = 59/233 (25%), Positives = 93/233 (39%), Gaps = 33/233 (14%)

Query: 307 LRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPK-YMNLTQLEFLYLENNKFSG 365
           L L +N     +          L +L LS N+    I    +  L  L  L L +N+ + 
Sbjct: 69  LNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLT- 125

Query: 366 KIEEG-LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHG 424
            I  G     ++L EL + NN +   IP     F+  +  L             + L+ G
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIP--SYAFN-RIPSL-------------RRLDLG 168

Query: 425 SLNLLS-VSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRF 483
            L  LS +SE    G       LS+L +L L M +L   IP  L     L  LDL  N  
Sbjct: 169 ELKRLSYISEGAFEG-------LSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHL 219

Query: 484 SGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
           S + P      + L+ L +  + ++    N    L+ L  ++L+HN ++  +P
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLP 271

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 60/301 (19%), Positives = 103/301 (34%), Gaps = 58/301 (19%)

Query: 374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSE 433
           SN+ +++      L   +P      S++ ++L + +  ++        +   L +L +S 
Sbjct: 42  SNQFSKVICVRKNLR-EVPD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR 97

Query: 434 NCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQI 491
           N +      +F  L++L  L L  N L+  IP   F   S L  L LR+N     IP   
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

Query: 492 SESLT-LRFL-LLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGN 549
              +  LR L L     L          L  L  L+L+   +   IP+        +   
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN--------LTPL 206

Query: 550 VYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGS 609
           + L E  L               N   H      G +     L K               
Sbjct: 207 IKLDELDL-------------SGN---HLSAIRPGSFQGLMHLQK--------------- 235

Query: 610 NIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSH 668
                  L +  +Q+     +   +L  +  +NL++N L+      F+ L  +E + L H
Sbjct: 236 -------LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 669 N 669
           N
Sbjct: 289 N 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 617 LDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVP 676
           L+L+   L   IP+    +++  L+LS N LS   PGSF  L  ++ L +  +++   + 
Sbjct: 190 LNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIE 247

Query: 677 PR-LTELNFLSNFNVSFNNLSGLIPD 701
                 L  L   N++ NNL+ L  D
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHD 273

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 617 LDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVP 676
           +      L   +P  I     R LNL  N +      SF +L+ +E L LS N +   + 
Sbjct: 48  VICVRKNLRE-VPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIE 104

Query: 677 PR-LTELNFLSNFNVSFNNLSGL 698
                 L  L+   +  N L+ +
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTI 127

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.5 bits (233), Expect = 8e-21
 Identities = 62/317 (19%), Positives = 114/317 (35%), Gaps = 37/317 (11%)

Query: 231 LEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRF 290
           L  +  ++        +PK        LD+ NN+++ +L +D    LQ L  + + +N+ 
Sbjct: 35  LRVVQCSDLGLK---AVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 291 EGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM-- 348
                 +   ++ L  L + KN+   E+P  L +   SL  L +  N    +  PK +  
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPS---SLVELRIHDNRI--RKVPKGVFS 144

Query: 349 NLTQLEFLYLENNKF-SGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLM 407
            L  +  + +  N   +   E G  +  +LN L IS   L+  IP       +      +
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPET------L 195

Query: 408 SKMFLKGN----IPAQLLNH-GSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSG 461
           +++ L  N    I  + L     L  L +  N +      S   L +L  L+L  N LS 
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255

Query: 462 PIPIALFRSSNLITLDLRDNRFSGVIPHQIS------ESLTLRFLLLRGNYLEGQI--PN 513
            +P  L     L  + L  N  + V  +         +      + L  N +      P 
Sbjct: 256 -VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

Query: 514 QLCQLRRLGVLDLSHNR 530
               +     +   + +
Sbjct: 315 TFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 63/339 (18%), Positives = 97/339 (28%), Gaps = 73/339 (21%)

Query: 36  TNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
            +  +LDL    I+ L+      L++L AL L  N IS                      
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS---------------------- 91

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
            I          L  L+ L IS N L   +P      +SL  L + DN           +
Sbjct: 92  KIH---EKAFSPLRKLQKLYISKNHLV-EIPPN--LPSSLVELRIHDNRIR-KVPKGVFS 144

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSG 213
               +  + +       S          +L  L +    L  IP  L     L  L L  
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE--TLNELHLDH 202

Query: 214 NNLVGDFPTWVLRNNTKLEALFLTNN--------SFTGNLQLPKTKHDFLHHLDVSNNNL 265
           N +        L   +KL  L L +N        S +    LP      L  L + NN L
Sbjct: 203 NKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF---LPT-----LRELHLDNNKL 253

Query: 266 TGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTG 325
           + ++P  +   L+ L  + +  N                   ++  N+F           
Sbjct: 254 S-RVPAGLP-DLKLLQVVYLHTNNIT----------------KVGVNDFCPVGFGVKRA- 294

Query: 326 CISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNK 362
                 + L  N              +T    +   N K
Sbjct: 295 --YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.8 bits (218), Expect = 7e-19
 Identities = 49/272 (18%), Positives = 97/272 (35%), Gaps = 28/272 (10%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           F  L +L  L L    I+ +     + L+ L+ L +S N++     +       +L E  
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL----PSSLVELR 129

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQL-SGTLPSAITTLTSLEYLALLDNNFEGTFL 148
           +    I+         L ++  +++  N L +            L YL + +        
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK------ 183

Query: 149 LNSLANH--SKLEVLLLSSRTNMLS-VKTENFLPTFQLKVLGLPNYNLKVIPSFLL-HQY 204
           L  +       L  L L    N +  ++ E+ L   +L  LGL +  +++I +  L    
Sbjct: 184 LTGIPKDLPETLNELHLDH--NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 205 DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTG------NLQLPKTKHDFLHHL 258
            L+ L L  N L    P   L +   L+ ++L  N+ T              K  + + +
Sbjct: 242 TLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299

Query: 259 DVSNNNLT-GKLPEDMGIILQKLLYIDMSDNR 289
            + NN +   ++       +   L I   + +
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.5 bits (212), Expect = 4e-18
 Identities = 61/314 (19%), Positives = 122/314 (38%), Gaps = 29/314 (9%)

Query: 182 QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSF 241
            L+V+   +  LK +P  +    D  LLDL  N++  +      +    L AL L NN  
Sbjct: 34  HLRVVQCSDLGLKAVPKEISP--DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 242 TGNLQLPK---TKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSI 298
           +   ++ +   +    L  L +S N+L  ++P ++      L+ + + DNR         
Sbjct: 91  S---KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL---PSSLVELRIHDNRIRKVPKGVF 143

Query: 299 GEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYL 358
             ++ +  + +  N        P     + L  L +S         PK +    L  L+L
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL--TGIPKDL-PETLNELHL 200

Query: 359 ENNKFSGKIEEG-LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIP 417
           ++NK    IE   L   ++L  L + +N +   I +   +F   L+ L +    L   +P
Sbjct: 201 DHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 418 AQLLNHGSLNLLSVSENCLS-------GPMTSSFNLSSLEHLYLQMNSLS-GPIPIALFR 469
           A L +   L ++ +  N ++        P+      +    + L  N +    +  A FR
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317

Query: 470 S-SNLITLDLRDNR 482
             ++ + +   + +
Sbjct: 318 CVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 65/234 (27%), Positives = 95/234 (40%), Gaps = 17/234 (7%)

Query: 304 LIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPK-YMNLTQLEFLYLENNK 362
              L L  N+ S EL      G   L  L L  N    +I  K +  L +L+ LY+  N 
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNH 113

Query: 363 FSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFS--SDLKVLLMSKMFLK-GNIPAQ 419
              +I   L +S  L EL I +N +   +P   G FS   ++  + M    L+       
Sbjct: 114 LV-EIPPNLPSS--LVELRIHDNRIR-KVPK--GVFSGLRNMNCIEMGGNPLENSGFEPG 167

Query: 420 LLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDL 478
             +   LN L +SE  L+G         +L  L+L  N +   I +      S L  L L
Sbjct: 168 AFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGL 224

Query: 479 RDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS 532
             N+   +    +S   TLR L L  N L  ++P  L  L+ L V+ L  N I+
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 13/186 (6%)

Query: 351 TQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFS--SDLKVLLMS 408
                L L+NN  S   ++       L  L + NN +S  I      FS    L+ L +S
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHE--KAFSPLRKLQKLYIS 110

Query: 409 KMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSL-SGPIPIA 466
           K  L   IP  L +  SL  L + +N +       F  L ++  + +  N L +      
Sbjct: 111 KNHLV-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167

Query: 467 LFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDL 526
            F    L  L + + + +G IP  + E+L    L L  N ++      L +  +L  L L
Sbjct: 168 AFDGLKLNYLRISEAKLTG-IPKDLPETLN--ELHLDHNKIQAIELEDLLRYSKLYRLGL 224

Query: 527 SHNRIS 532
            HN+I 
Sbjct: 225 GHNQIR 230

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 57/314 (18%), Positives = 103/314 (32%), Gaps = 53/314 (16%)

Query: 374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSE 433
              L  +  S+  L   +P      S D  +L +    +             L  L +  
Sbjct: 32  HCHLRVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN 87

Query: 434 NCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQIS 492
           N +S     +F  L  L+ LY+  N L   IP  L    +L+ L + DNR   V     S
Sbjct: 88  NKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLPS--SLVELRIHDNRIRKVPKGVFS 144

Query: 493 ESLTLRFLLLRGNYL-EGQIPNQLCQLRRLGVLDLSHNR---ISGSIPSCLTIMLLWVAG 548
               +  + + GN L             +L  L +S  +   I   +P  L    L +  
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE--LHLDH 202

Query: 549 NVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNR-YELYN 607
           N                  I                    + +L ++  +  N+   + N
Sbjct: 203 N-----------------KIQAIELEDL----------LRYSKLYRL-GLGHNQIRMIEN 234

Query: 608 GS--NIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKW---- 660
           GS   +  +  L L  N+L+  +P+ + DL  ++ + L  N ++      F  + +    
Sbjct: 235 GSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293

Query: 661 --IESLDLSHNRLS 672
                + L +N + 
Sbjct: 294 AYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 617 LDLSCNQLTGGIPSEI--GDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQ 674
           L L  N++   I  E      ++  L L +N +     GS S L  +  L L +N+LS +
Sbjct: 198 LHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 675 VPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNL 717
           VP  L +L  L    +  NN++ +      F        R   
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKV--GVNDFCPVGFGVKRAYY 296

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 67/373 (17%), Positives = 121/373 (32%), Gaps = 61/373 (16%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           F  L++L IL L       L+      L NLE L L+  N+ G+  S             
Sbjct: 75  FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF---------- 124

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAI-TTLTSLEYLALLDNNFEGTFL 148
                         K L+ L++L +  N +    P++    +     L L  N  + +  
Sbjct: 125 -------------FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SIC 170

Query: 149 LNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKL 208
              L N       LL   +  L    E +L   +                       +  
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN--------------PFKNTSITT 216

Query: 209 LDLSGNNL--VGDFPTWVLRNNTKLEALFLTNNSFTG------------NLQLPKTKHDF 254
           LDLSGN          +     TK+++L L+N+   G            N      +   
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF 314
           +   D+S + +   L + +      L  + ++ N       ++   +  L+ L L +N  
Sbjct: 277 VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335

Query: 315 SGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEGLS 372
              + + +      L +LDLS N+   +         L  L+ L L+ N+     +    
Sbjct: 336 G-SIDSRMFENLDKLEVLDLSYNHI--RALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392

Query: 373 NSNELNELDISNN 385
               L ++ +  N
Sbjct: 393 RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 88/417 (21%), Positives = 148/417 (35%), Gaps = 56/417 (13%)

Query: 59  NLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLP-DCLKNLSHLKVLDISYN 117
           ++  +DLS N+I+          L++L    +        +  +  + LS L +L + YN
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 118 QLSGTLPSAITTLTSLEYLALLDNNFEGTFL-LNSLANHSKLEVLLLSSRTNML-SVKTE 175
           Q       A   L +LE L L   N +G  L  N     + LE+L+L    N +  ++  
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD--NNIKKIQPA 147

Query: 176 N-FLPTFQLKVLGLPNYNLKVIPS---FLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKL 231
           + FL   +  VL L    +K I              LL LS   L               
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL--------------- 192

Query: 232 EALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPE--DMGIILQKLLYIDMSDNR 289
               +              K+  +  LD+S N     + +     I   K+  + +S++ 
Sbjct: 193 --QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS- 249

Query: 290 FEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM- 348
                 +         F       F G L A  +         DLS +        K + 
Sbjct: 250 -----YNMGSSFGHTNFKDPDNFTFKG-LEASGVK------TCDLSKSKI--FALLKSVF 295

Query: 349 -NLTQLEFLYLENNKFSGKIEEG-LSNSNELNELDISNNLLSGHIPHWIGNFSS--DLKV 404
            + T LE L L  N+ + KI++        L +L++S N L   I      F +   L+V
Sbjct: 296 SHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDS--RMFENLDKLEV 351

Query: 405 LLMSKMFLKGNIPAQLLNH-GSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSL 459
           L +S   ++  +  Q      +L  L++  N L       F  L+SL+ ++L  N  
Sbjct: 352 LDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 71/376 (18%), Positives = 125/376 (33%), Gaps = 68/376 (18%)

Query: 351 TQLEFLYLENNKFSGKIEEG-LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSK 409
             + ++ L  N  + ++ E   S   +L  L +        I +      S L +L    
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL---- 84

Query: 410 MFLKGN----IPAQLLNH-GSLNLLSVSENCLSGPM--TSSF-NLSSLEHLYLQMNSLSG 461
             L  N    +     N   +L +L++++  L G +   + F  L+SLE L L+ N++  
Sbjct: 85  -KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143

Query: 462 PIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLT---LRFLLLRGNYLEGQIPNQLCQ 517
             P + F +      LDL  N+    I  +   +        L L    L+      L  
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 518 --------LRRLGVLDLSHNRISGSIP---------SCLTIMLLWVAGNVYLHEPYLQFF 560
                      +  LDLS N    S+          + +  ++L  + N+     +  F 
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 561 SAIFVGSIGTYYNSTFHFGHYGNGVYSI----FPQLVKVEFMTKNRYELYNGSNIKYMVG 616
                   G   +         + ++++    F     +E                    
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ------------------- 303

Query: 617 LDLSCNQLTGGIPSEIGD--LQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQ 674
           L L+ N++   I          +  LNLS NFL       F NL  +E LDLS+N +   
Sbjct: 304 LTLAQNEINK-IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-A 361

Query: 675 VPP----RLTELNFLS 686
           +       L  L  L+
Sbjct: 362 LGDQSFLGLPNLKELA 377

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 53/290 (18%), Positives = 96/290 (33%), Gaps = 38/290 (13%)

Query: 32  FANLTNLKILDLSGCGITTLQ---GLTKLKNLEALDLSYNNISGSSE---------SQGV 79
           F  LT+L++L L    I  +Q       ++    LDL++N +    E            +
Sbjct: 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184

Query: 80  CELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALL 139
             L +++   +    +           + +  LD+S N    ++        +   +  L
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

Query: 140 D----NNFEGTFLLNSLAN----------HSKLEVLLLSSRTNML-SVKTENFLPTFQLK 184
                 N   +F   +  +           S ++   LS   + + ++    F     L+
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK--SKIFALLKSVFSHFTDLE 302

Query: 185 VLGLPNYNLKVIPSFLLHQYD-LKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTG 243
            L L    +  I          L  L+LS N L G   + +  N  KLE L L+ N    
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR- 360

Query: 244 NLQLPK---TKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRF 290
              L          L  L +  N L   +P+ +   L  L  I +  N +
Sbjct: 361 --ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 81/432 (18%), Positives = 144/432 (33%), Gaps = 75/432 (17%)

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSI-GEMKALIFLRLPKNN 313
           ++++D+S N++  +L E     LQ L ++ +        + ++    + +LI L+L  N 
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 314 FSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEGL 371
           F  +L      G  +L +L L+  N  G +        LT LE L L +N          
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 372 -SNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLS 430
             N    + LD++ N +   I     +  +                   LL   S+ L  
Sbjct: 150 FLNMRRFHVLDLTFNKVK-SICE--EDLLNFQGKHF------------TLLRLSSITLQD 194

Query: 431 VSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNL-----ITLDLRDNRFS 484
           ++E  L      +    +S+  L L  N     +    F +        + L    N  S
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254

Query: 485 GVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNR---ISGSIPSCLT- 540
                   +     F  L  + ++                DLS ++   +  S+ S  T 
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVK--------------TCDLSKSKIFALLKSVFSHFTD 300

Query: 541 IMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTK 600
           +  L +A N         F+    +  +    N     G   + +   F  L K+E    
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN---FLGSIDSRM---FENLDKLEV--- 351

Query: 601 NRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGD--LQIRGLNLSYNFLSGSIP-GSFSN 657
                           LDLS N +   +  +       ++ L L  N L  S+P G F  
Sbjct: 352 ----------------LDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDR 393

Query: 658 LKWIESLDLSHN 669
           L  ++ + L  N
Sbjct: 394 LTSLQKIWLHTN 405

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.7 bits (235), Expect = 3e-20
 Identities = 80/468 (17%), Positives = 137/468 (29%), Gaps = 91/468 (19%)

Query: 63  LDLSYNNISGSSES--QGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLS 120
            +  YN ISG+         + +  +            L +CL  ++    L ++   LS
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS 72

Query: 121 GTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPT 180
            +LP  +     +  L +  N      L    A+                          
Sbjct: 73  -SLPDNL--PPQITVLEITQNAL--ISLPELPAS-------------------------- 101

Query: 181 FQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNS 240
             L+ L   +  L  +P        LK LD+  N L     T +      LE +   NN 
Sbjct: 102 --LEYLDACDNRLSTLPELPAS---LKHLDVDNNQL-----TMLPELPALLEYINADNNQ 151

Query: 241 FTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGE 300
            T   +LP +    L  L V NN LT  LPE    + + L  +D+S N  E  LP+    
Sbjct: 152 LTMLPELPTS----LEVLSVRNNQLT-FLPE----LPESLEALDVSTNLLES-LPAVPVR 201

Query: 301 MKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM-NLTQLEFLYLE 359
                   +                           N       P+ + +L     + LE
Sbjct: 202 NHHSEETEI---------------------FFRCRENRI--THIPENILSLDPTCTIILE 238

Query: 360 NNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQ 419
           +N  S +I E LS      +        S                +       K +  +Q
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298

Query: 420 LLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLR 479
           + +       + + +     ++ + +  +      Q+ +        L + S    L  +
Sbjct: 299 IWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAW-------LEKLSASAELRQQ 351

Query: 480 DNRFSGVIPHQISESLTLRFLLLRGNYL-----EGQIPNQLCQLRRLG 522
               +        + + L +  LR   L     EG   N    L  LG
Sbjct: 352 SFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLG 399

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.2 bits (200), Expect = 4e-16
 Identities = 57/300 (19%), Positives = 95/300 (31%), Gaps = 42/300 (14%)

Query: 273 MGIILQKLLYIDMSDNRFEGYLPSSIGEMKA-------LIFLRLPKNNFSGELPAPLLTG 325
           M I+L       +S N F   +  +  +  +              +N     L   L+  
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN- 59

Query: 326 CISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNN 385
                 L L+  N      P  +   Q+  L +  N     + E  ++   L  LD  +N
Sbjct: 60  --QFSELQLNRLNL--SSLPDNL-PPQITVLEITQNALI-SLPELPAS---LEYLDACDN 110

Query: 386 LLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFN 445
            LS  +P    +    LK L +    L   +P        L  ++   N L+        
Sbjct: 111 RLS-TLPELPAS----LKHLDVDNNQLT-MLPELP---ALLEYINADNNQLT---MLPEL 158

Query: 446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLR----FLL 501
            +SLE L ++ N L+  +P       +L  LD+  N     +P     +        F  
Sbjct: 159 PTSLEVLSVRNNQLTF-LPELP---ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFR 213

Query: 502 LRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS---GSIPSCLTIMLLWVAGNVYLHEPYLQ 558
            R N +   IP  +  L     + L  N +S       S  T    +    +Y      Q
Sbjct: 214 CRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.4 bits (146), Expect = 2e-09
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 33  ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI--- 89
              T+L++L +    +T L  L   ++LEALD+S N +             +  E     
Sbjct: 157 ELPTSLEVLSVRNNQLTFLPEL--PESLEALDVSTNLLESLPAV--PVRNHHSEETEIFF 212

Query: 90  -LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFE 144
             R   I  H+P+ + +L     + +  N LS  +  +++  T+          F 
Sbjct: 213 RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 609 SNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSH 668
                +  LD+  NQLT  +P     L+   +N   N L+  +P   ++L+    L + +
Sbjct: 117 ELPASLKHLDVDNNQLT-MLPELPALLEY--INADNNQLT-MLPELPTSLEV---LSVRN 169

Query: 669 NRLSGQVPPRLTELNFLSNFNVSFNNLSGL 698
           N+L+  +P     L  L   +VS N L  L
Sbjct: 170 NQLT-FLPELPESLEAL---DVSTNLLESL 195

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 7/106 (6%)

Query: 617 LDLSCNQLTGGIPSEIGDLQ-----IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRL 671
           LD+S N L   +P+                   N ++  IP +  +L    ++ L  N L
Sbjct: 185 LDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

Query: 672 SGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNL 717
           S ++   L++     +++      S     +         +     
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.4 bits (234), Expect = 4e-20
 Identities = 46/235 (19%), Positives = 90/235 (38%), Gaps = 17/235 (7%)

Query: 31  GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
                      +L    +T      +L +++ +  + ++I      QG+  L N+++  L
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFL 72

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLN 150
            G  +    P  L NL +L  L +  N++     S++  L  L+ L+L  N       +N
Sbjct: 73  NGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGIS---DIN 125

Query: 151 SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLD 210
            L +  +LE L L +  N ++          +L  L L +  +  I   L     L+ L 
Sbjct: 126 GLVHLPQLESLYLGN--NKIT-DITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLY 181

Query: 211 LSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNL 265
           LS N++  D     L     L+ L L +          ++     + +  ++ +L
Sbjct: 182 LSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.0 bits (207), Expect = 6e-17
 Identities = 51/254 (20%), Positives = 93/254 (36%), Gaps = 26/254 (10%)

Query: 38  LKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKG 97
           +         I  +            +L   +++ +       EL ++ + I    +IK 
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIK- 56

Query: 98  HLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSK 157
            +   ++ L ++  L ++ N+L+      +T L +L +L L +N  +    L+SL +  K
Sbjct: 57  SV-QGIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKD---LSSLKDLKK 110

Query: 158 LEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLV 217
           L+ L L    N +S      +   QL+ L L N  +  I + L     L  L L  N + 
Sbjct: 111 LKSLSLEH--NGIS-DINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS 166

Query: 218 GDFPTWVLRNNTKLEALFLTNN---SFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMG 274
              P   L   TKL+ L+L+ N          L       L  L++ +     K      
Sbjct: 167 DIVP---LAGLTKLQNLYLSKNHISDLRALAGLKN-----LDVLELFSQECLNKPINHQS 218

Query: 275 IILQKLLYIDMSDN 288
             L     +  +D 
Sbjct: 219 -NLVVPNTVKNTDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 2e-14
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 5/131 (3%)

Query: 31  GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
           G  +L  L+ L L    IT +  L++L  L+ L L  N IS   +   +  L  L    L
Sbjct: 126 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYL 182

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLN 150
              +I       L  L +L VL++   +      +  + L     +   D +     +++
Sbjct: 183 SKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 151 SLANHSKLEVL 161
              ++ K  V 
Sbjct: 241 DDGDYEKPNVK 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.0 bits (181), Expect = 7e-14
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 29  VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
           +    +L  LK L L   GI+ + GL  L  LE+L L  N I   ++   +  L  L   
Sbjct: 102 LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTL 158

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNN 142
            L    I   +   L  L+ L+ L +S N +S     A+  L +L+ L L    
Sbjct: 159 SLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 208

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 7e-10
 Identities = 52/304 (17%), Positives = 90/304 (29%), Gaps = 72/304 (23%)

Query: 85  LSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFE 144
           + E I     IK   PD     +     ++    ++  +      L S++ +   +++ +
Sbjct: 1   MGETITVSTPIKQIFPD--DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 145 GTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQY 204
               +  +     +  L L+   N L+   +       L  L L    +K + S L    
Sbjct: 57  S---VQGIQYLPNVTKLFLNG--NKLT-DIKPLTNLKNLGWLFLDENKIKDL-SSLKDLK 109

Query: 205 DLKLLDLSGNNLVGDFPTWVLRNNTKLEAL-FLTNNSFTGNLQLPKTKHDFLHHLDVSNN 263
            LK L L  N +            + +  L  L                  L  L + NN
Sbjct: 110 KLKSLSLEHNGI------------SDINGLVHLPQ----------------LESLYLGNN 141

Query: 264 NLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLL 323
            +T                             + +  +  L  L L  N  S  +P   L
Sbjct: 142 KITD---------------------------ITVLSRLTKLDTLSLEDNQISDIVP---L 171

Query: 324 TGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDIS 383
            G   L  L LS N+           L  L+ L L + +   K     SN    N +  +
Sbjct: 172 AGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 384 NNLL 387
           +  L
Sbjct: 230 DGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 43/224 (19%), Positives = 93/224 (41%), Gaps = 20/224 (8%)

Query: 323 LTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDI 382
                     +L   +    +      L  ++ +   N+     ++ G+     + +L +
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFL 72

Query: 383 SNNLLSGHIPHWIGNFSS--DLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPM 440
           + N L+      I   ++  +L  L + +  +K ++ + L +   L  LS+  N +S  +
Sbjct: 73  NGNKLTD-----IKPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGISD-I 124

Query: 441 TSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFL 500
               +L  LE LYL  N ++    ++  R + L TL L DN+ S ++P  ++    L+ L
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180

Query: 501 LLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLL 544
            L  N++   +   L  L+ L VL+L          +  + +++
Sbjct: 181 YLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVV 222

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 4e-06
 Identities = 41/269 (15%), Positives = 95/269 (35%), Gaps = 63/269 (23%)

Query: 429 LSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIP 488
            ++ +  ++  +T +  L+S++ +    + +     I      N+  L L  N+ + + P
Sbjct: 26  DNLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQGIQYL--PNVTKLFLNGNKLTDIKP 82

Query: 489 HQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS--GSIPSCLTIMLLWV 546
             ++    L +L L  N ++  + + L  L++L  L L HN IS    +     +  L++
Sbjct: 83  --LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 138

Query: 547 AGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELY 606
             N                                         ++  +  +++      
Sbjct: 139 GNN-----------------------------------------KITDITVLSRL----- 152

Query: 607 NGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDL 666
             + +     L L  NQ++  I    G  +++ L LS N +S  +    + LK ++ L+L
Sbjct: 153 --TKLDT---LSLEDNQIS-DIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 204

Query: 667 SHNRLSGQVPPRLTELNFLSNFNVSFNNL 695
                  +     + L   +    +  +L
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 88.2 bits (219), Expect = 3e-19
 Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 20/236 (8%)

Query: 29  VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
            V  A+L  +  L   G G+TT++G+  L NL  L+L  N I+  +    +  L  ++E 
Sbjct: 34  TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA---PLKNLTKITEL 90

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
            L G  +K      +  L  +K LD++  Q++    + +  L++L+ L L  N       
Sbjct: 91  ELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN--- 143

Query: 149 LNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKL 208
           ++ LA  + L+ L + +    +S          +L  L   +  +  I S L    +L  
Sbjct: 144 ISPLAGLTNLQYLSIGN--AQVS-DLTPLANLSKLTTLKADDNKISDI-SPLASLPNLIE 199

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNN 264
           + L  N +    P   L N + L  + LTN + T     P   ++ L   +V    
Sbjct: 200 VHLKNNQISDVSP---LANTSNLFIVTLTNQTIT---NQPVFYNNNLVVPNVVKGP 249

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.4 bits (209), Expect = 6e-18
 Identities = 53/234 (22%), Positives = 85/234 (36%), Gaps = 19/234 (8%)

Query: 33  ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG 92
             L N   +      +T       L  +  L      +   +  +GV  L NL    L+ 
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELKD 72

Query: 93  INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSL 152
             I       LKNL+ +  L++S N L     SAI  L S++ L L          +  L
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD---VTPL 125

Query: 153 ANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLS 212
           A  S L+VL L    N ++           L+ L + N  +  + + L +   L  L   
Sbjct: 126 AGLSNLQVLYLDL--NQIT-NISPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKAD 181

Query: 213 GNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLT 266
            N +  D     L +   L  + L NN  +    L  T +  L  + ++N  +T
Sbjct: 182 DNKIS-DISP--LASLPNLIEVHLKNNQISDVSPLANTSN--LFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.3 bits (201), Expect = 7e-17
 Identities = 45/210 (21%), Positives = 83/210 (39%), Gaps = 15/210 (7%)

Query: 31  GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
              NLT +  L+LSG  +  +  +  L++++ LDL+   I   ++   +  L NL    L
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI---TDVTPLAGLSNLQVLYL 136

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLN 150
               I       L  L++L+ L I   Q+S    + +  L+ L  L   DN       ++
Sbjct: 137 DLNQITN--ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD---IS 189

Query: 151 SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLD 210
            LA+   L  + L +  N +S        T  L ++ L N  +   P  + +  +L + +
Sbjct: 190 PLASLPNLIEVHLKN--NQIS-DVSPLANTSNLFIVTLTNQTITNQP--VFYNNNLVVPN 244

Query: 211 LSGNNLVGDFPTWVLRNNTKLEALFLTNNS 240
           +             + +N    +  LT N 
Sbjct: 245 VVKGPSGAPIAPATISDNGTYASPNLTWNL 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 44/296 (14%), Positives = 89/296 (30%), Gaps = 48/296 (16%)

Query: 102 CLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVL 161
               L++   +    + ++         L  +  L+           + ++     L   
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTG------VTTIEGVQYLN-- 63

Query: 162 LLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFP 221
                                L  L L +  +  + + L +   +  L+LSGN L     
Sbjct: 64  --------------------NLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNVSA 102

Query: 222 TWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLL 281
              +     ++ L LT+   T    L    +  L  L +  N +T  +    G  L  L 
Sbjct: 103 ---IAGLQSIKTLDLTSTQITDVTPLAGLSN--LQVLYLDLNQIT-NISPLAG--LTNLQ 154

Query: 282 YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG 341
           Y+ + + +      + +  +  L  L+   N  S   P   L    +L  + L  N    
Sbjct: 155 YLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISD 209

Query: 342 QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGN 397
                  N + L  + L N   +   +    N+N +    +     +   P  I +
Sbjct: 210 --VSPLANTSNLFIVTLTNQTITN--QPVFYNNNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 26/286 (9%)

Query: 225 LRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGII--LQKLLY 282
                    +    ++ T  +         +  L      +T      +  +  L  L+ 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTGVT-----TIEGVQYLNNLIG 67

Query: 283 IDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQ 342
           +++ DN+      + +  +  +  L L  N     + A  + G  S+  LDL+       
Sbjct: 68  LELKDNQITD--LAPLKNLTKITELELSGNPLK-NVSA--IAGLQSIKTLDLTSTQI--T 120

Query: 343 IFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDL 402
                  L+ L+ LYL+ N+ +  I   L+    L  L I N  +S   P  + N S  L
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSK-L 175

Query: 403 KVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGP 462
             L      +  +I   L +  +L  + +  N +S  ++   N S+L  + L   +++  
Sbjct: 176 TTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTNQTITNQ 232

Query: 463 IPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLE 508
                + ++ ++   ++    + + P  IS++ T     L  N   
Sbjct: 233 PV--FYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 40/256 (15%), Positives = 90/256 (35%), Gaps = 43/256 (16%)

Query: 277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSG 336
           L   + I    +        +  ++  +  L       +  +    +    +L  L+L  
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKD 72

Query: 337 NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIG 396
           N           NLT++  L L  N     +   ++    +  LD+++  ++      + 
Sbjct: 73  NQI--TDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITD-----VT 123

Query: 397 NFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQM 456
             +                         +L +L +  N ++  ++    L++L++L +  
Sbjct: 124 PLA----------------------GLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGN 160

Query: 457 NSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLC 516
             +S   P+A    S L TL   DN+ S + P  ++    L  + L+ N +    P  L 
Sbjct: 161 AQVSDLTPLANL--SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LA 214

Query: 517 QLRRLGVLDLSHNRIS 532
               L ++ L++  I+
Sbjct: 215 NTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 34/184 (18%), Positives = 71/184 (38%), Gaps = 14/184 (7%)

Query: 349 NLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMS 408
            L     +    +  +       ++ + +  L      ++  I   +   ++ L  L + 
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNN-LIGLELK 71

Query: 409 KMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALF 468
              +  ++   L N   +  L +S N L   +++   L S++ L L    ++   P+A  
Sbjct: 72  DNQIT-DLAP-LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 469 RSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSH 528
             SNL  L L  N+ + + P  ++    L++L +    +    P  L  L +L  L    
Sbjct: 129 --SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182

Query: 529 NRIS 532
           N+IS
Sbjct: 183 NKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 36/258 (13%), Positives = 82/258 (31%), Gaps = 28/258 (10%)

Query: 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
            L++   +    ++++  +  A      + TL       + +    +     L  L L+ 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRISG--SIPSCLTIMLLWVAGNVYLHEPYLQFFSA 562
           N +   +   L  L ++  L+LS N +    +I    +I  L +          L   S 
Sbjct: 73  NQIT-DLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 563 IFVGSIGTYYNSTFHFGHYGNGVYSI-----FPQLVKVEFMTKNRYELYNGSNIKYMVGL 617
           + V  +              N + +I        L  +        +L   +N+  +  L
Sbjct: 131 LQVLYLD------------LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL 178

Query: 618 DLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPP 677
               N+++  I        +  ++L  N +S   P   +N   +  + L++  ++ Q   
Sbjct: 179 KADDNKISD-ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVF 235

Query: 678 RLTELNFLSNFNVSFNNL 695
               L   +         
Sbjct: 236 YNNNLVVPNVVKGPSGAP 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 85.6 bits (212), Expect = 4e-18
 Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 11/233 (4%)

Query: 36  TNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
            N   L      +  +Q    +   +LE +++S N++    E+     L  L E  +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 94  N-IKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSL 152
           N +    P+  +NL +L+ L IS   +                L + DN    T   NS 
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 153 ANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLL-HQYDLKLLDL 211
              S   V+L  ++  +  +    F  T   ++    N NL+ +P+ +        +LD+
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 212 SGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQ-LPKTKHDFLHHLDVSNN 263
           S   +    P++ L N  KL A    N      L+ L       L    ++  
Sbjct: 210 SRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTLEKLVA-----LMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 41/256 (16%), Positives = 71/256 (27%), Gaps = 30/256 (11%)

Query: 107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
            +   L     +L      A +    LE + +  N+       +  +N  KL  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 167 TNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFL-LHQYDLKLLDLSGNNLVGDFPTWVL 225
            N+L +  E F     L+ L + N  +K +P    +H     LLD+  N  +        
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE---- 145

Query: 226 RNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDM 285
                        NSF G              L ++ N +  ++        Q       
Sbjct: 146 ------------RNSFVGLSFE-------SVILWLNKNGIQ-EIHNSAFNGTQLDELNLS 185

Query: 286 SDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFP 345
            +N  E             + L + +      LP+  L     L            +  P
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL----KKLP 240

Query: 346 KYMNLTQLEFLYLENN 361
               L  L    L   
Sbjct: 241 TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 28/218 (12%)

Query: 183 LKVLGLPNYNLKVIPSFLLHQY-DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN-- 239
              L      L+VI       + DL+ +++S N+++      V  N  KL  + +     
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 240 -------SFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEG 292
                  +F     LP      L +L +SN  +   LP+   I   + + +D+ DN    
Sbjct: 92  LLYINPEAFQN---LPN-----LQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 293 YLPSSI--GEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFY---GQIFPKY 347
            +  +   G     + L L KN    E+      G     L     NN       +F   
Sbjct: 143 TIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVF--- 198

Query: 348 MNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNN 385
              +    L +   +       GL N  +L      N 
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 9/191 (4%)

Query: 353 LEFLYLENNKFSGKIEEG-LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMF 411
              L     K    I++G  S   +L +++IS N +   I   + +    L  + + K  
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 412 LKGNIPAQLLNH-GSLNLLSVSENCLSG-PMTSSFNLSSLEHLYLQMNSLSGPIPIALFR 469
               I  +   +  +L  L +S   +   P     +      L +Q N     I    F 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 470 --SSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQ-LRRLGVLDL 526
             S   + L L  N    +     + +      L   N LE ++PN +        +LD+
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDI 209

Query: 527 SHNRISGSIPS 537
           S  RI  S+PS
Sbjct: 210 SRTRIH-SLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 31/203 (15%)

Query: 15  KWLFNNASNILFFIVVG-FANLTNLKILDLSGCGITTLQGLTK--LKNLEALDLSYNNIS 71
             +    +N L +I    F NL NL+ L +S  GI  L  + K        LD+  N   
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-- 139

Query: 72  GSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLT 131
                     +  +      G++ +              +L ++ N +   + ++    T
Sbjct: 140 ---------NIHTIERNSFVGLSFE------------SVILWLNKNGIQ-EIHNSAFNGT 177

Query: 132 SLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNY 191
            L+ L L DNN       +     S   +L +S  T + S+ +       +L+      Y
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGLENLKKLRARST--Y 234

Query: 192 NLKVIPSFLLHQYDLKLLDLSGN 214
           NLK +P+       L    L+  
Sbjct: 235 NLKKLPTL-EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 34/233 (14%), Positives = 75/233 (32%), Gaps = 13/233 (5%)

Query: 256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFS 315
                  + +T ++P D   + +  + +     +       +      L  + + +N+  
Sbjct: 12  RVFLCQESKVT-EIPSD---LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 316 GELPAPLLTGCISLGLLDLSGNNFYGQIFPKY-MNLTQLEFLYLENNKFSGKIEEGL-SN 373
             + A + +    L  + +   N    I P+   NL  L++L + N      + +    +
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIH 126

Query: 374 SNELNELDISNNLLSGHIPH-WIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSV 431
           S +   LDI +N+    I        S +  +L ++K  ++  I     N      L   
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLS 185

Query: 432 SENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNR 482
             N L       F   S    L +    +   +P     +   L      + +
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 45/244 (18%), Positives = 76/244 (31%), Gaps = 36/244 (14%)

Query: 447 SSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLT-LRFL-LLR 503
            +   L   +  L   I    F    +L  +++  N    VI   +  +L  L  + + +
Sbjct: 30  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 504 GNYLEGQIPNQLCQLRRLGVLDLSHNRIS----GSIPSCLTIMLLWVAGNVYLHEPYLQF 559
            N L    P     L  L  L +S+  I           L  +LL +  N+ +H      
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT----- 143

Query: 560 FSAIFVGSIGTYYNSTFHFGHYGNGVYSI------FPQLVKVEFMTKNR-YELYNG--SN 610
              I   S       +       NG+  I        QL ++     N   EL N     
Sbjct: 144 ---IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200

Query: 611 IKYMVGLDLSCNQLT---GGIPSEIGDLQIRGL-NLSYNFLSGSIPGSFSNLKWIESLDL 666
               V LD+S  ++          +  L+ R   NL        +P +   L  +    L
Sbjct: 201 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK------KLP-TLEKLVALMEASL 253

Query: 667 SHNR 670
           ++  
Sbjct: 254 TYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 42/248 (16%), Positives = 82/248 (33%), Gaps = 36/248 (14%)

Query: 475 TLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS 534
               ++++ +  IP  +  +     L      L             L  +++S N +   
Sbjct: 13  VFLCQESKVT-EIPSDLPRNAIE--LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 535 IPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNST--FHFGHYGNGVYSIFPQL 592
           I + +       +    LHE  ++  + +   +   + N     +      G+  + P +
Sbjct: 70  IEADV------FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDV 122

Query: 593 VKVEFMTKNRYELYNGSNIKY------------MVGLDLSCNQLTGGIPSEI-GDLQIRG 639
            K+  + K   ++ +  NI               V L L+ N +   I +      Q+  
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDE 181

Query: 640 LNLS-YNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPR----LTELNFLSNFNV---- 690
           LNLS  N L       F        LD+S  R+   +P      L +L   S +N+    
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLP 240

Query: 691 SFNNLSGL 698
           +   L  L
Sbjct: 241 TLEKLVAL 248

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.0 bits (208), Expect = 2e-17
 Identities = 60/304 (19%), Positives = 113/304 (37%), Gaps = 44/304 (14%)

Query: 192 NLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN--------SFTG 243
           +L  IPS L     +K LDLS N +        L+    L+AL LT+N        SF+ 
Sbjct: 42  SLNSIPSGLTE--AVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98

Query: 244 NLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSI-GEMK 302
              L         HLD+S N L+  L       L  L ++++  N ++    +S+   + 
Sbjct: 99  LGSL--------EHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149

Query: 303 ALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLEN 360
            L  LR+   +   ++      G   L  L++  ++   Q +      ++  +  L L  
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL--QSYEPKSLKSIQNVSHLILHM 207

Query: 361 NKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQL 420
            +    +E  +  ++ +  L++ +  L         +FS            L       L
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDTF------HFSE-----------LSTGETNSL 250

Query: 421 LNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLR 479
           +   +   + +++  L   M     +S L  L    N L   +P  +F   ++L  + L 
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLH 309

Query: 480 DNRF 483
            N +
Sbjct: 310 TNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 6e-17
 Identities = 56/290 (19%), Positives = 110/290 (37%), Gaps = 39/290 (13%)

Query: 36  TNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
             +K LDLS   IT +    L +  NL+AL L+ N I+             +        
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN------------TIE------- 92

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
                  D   +L  L+ LD+SYN LS    S    L+SL +L LL N ++     +  +
Sbjct: 93  ------EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS 146

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQ-YDLKLLDLS 212
           + +KL++L + +      ++ ++F     L+ L +   +L+      L    ++  L L 
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 213 GNNLVGDFPTWVLRNNTKLEALFLTNNSFTGN--LQLPK------TKHDFLHHLDVSNNN 264
               +       +   + +E L L +         +L         K     ++ +++ +
Sbjct: 207 MKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265

Query: 265 LTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF 314
           L   +       +  LL ++ S N+ +         + +L  + L  N +
Sbjct: 266 LFQVMKLLNQ--ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.8 bits (197), Expect = 4e-16
 Identities = 50/243 (20%), Positives = 90/243 (37%), Gaps = 19/243 (7%)

Query: 307 LRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFS 364
           L L  N  +  +    L  C++L  L L+ N        +    +L  LE L L  N  S
Sbjct: 57  LDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 365 GKIEEGL-SNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH 423
             +        + L  L++  N         + +  + L++L +  M     I  +    
Sbjct: 114 -NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 424 -GSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN 481
              L  L +  + L      S  ++ ++ HL L M      + I +  +S++  L+LRD 
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 482 RFSGVIPHQISE--------SLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISG 533
                   ++S           T R + +    L  Q+   L Q+  L  L+ S N++  
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK- 290

Query: 534 SIP 536
           S+P
Sbjct: 291 SVP 293

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 42/244 (17%), Positives = 85/244 (34%), Gaps = 34/244 (13%)

Query: 32  FANLTNLKILDLSGCGITTL-----QGLTKLK---------------------NLEALDL 65
                NL+ L L+  GI T+       L  L+                     +L  L+L
Sbjct: 72  LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131

Query: 66  SYNNISGSSESQGVCELKNLSEFILRGINIKGHLPD-CLKNLSHLKVLDISYNQLSGTLP 124
             N      E+     L  L    +  ++    +       L+ L+ L+I  + L    P
Sbjct: 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191

Query: 125 SAITTLTSLEYLALLDNNF----EGTFLLNSLANHSKLEVLLLSS--RTNMLSVKTENFL 178
            ++ ++ ++ +L L         E    + S     +L    L +   + + + +T + +
Sbjct: 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251

Query: 179 PTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTN 238
             F  + + + + +L  +   L     L  L+ S N L    P  +    T L+ ++L  
Sbjct: 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHT 310

Query: 239 NSFT 242
           N + 
Sbjct: 311 NPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 58/324 (17%), Positives = 98/324 (30%), Gaps = 69/324 (21%)

Query: 351 TQLEFLYLENNKFSGKIEEG-LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSK 409
             ++ L L NN+ +  I    L     L  L +++N ++                     
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN--------------------- 89

Query: 410 MFLKGNIPAQLLNH-GSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIAL 467
                 I     +  GSL  L +S N LS   +S F  LSSL  L L  N        +L
Sbjct: 90  -----TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144

Query: 468 FRS-SNLITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNYLEGQIPNQLCQLRRLGVLD 525
           F   + L  L + +      I  +    LT L  L +  + L+   P  L  ++ +  L 
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204

Query: 526 LSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGV 585
           L   +    +   + + +      + L +  L                 TFHF     G 
Sbjct: 205 LHMKQHI-LLLE-IFVDVTSSVECLELRDTDL----------------DTFHFSELSTGE 246

Query: 586 YSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYN 645
            +   +                         + ++   L   +        +  L  S N
Sbjct: 247 TNSLIKKFTFRN-------------------VKITDESLFQVMKLLNQISGLLELEFSRN 287

Query: 646 FLSGSIPGSFSNLKWIESLDLSHN 669
            L     G F  L  ++ + L  N
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 40/220 (18%), Positives = 69/220 (31%), Gaps = 36/220 (16%)

Query: 328 SLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEGL-SNSNELNELDISN 384
           ++  LDLS N                 L+ L L +N  +  IEE   S+   L  LD+S 
Sbjct: 53  AVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 385 NLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSVSENCLS--GPMT 441
           N LS                          N+ +       SL  L++  N     G  +
Sbjct: 110 NYLS--------------------------NLSSSWFKPLSSLTFLNLLGNPYKTLGETS 143

Query: 442 SSFNLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLTLRFL 500
              +L+ L+ L +        I    F   + L  L++  +      P  +     +  L
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203

Query: 501 LLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLT 540
           +L        +   +     +  L+L    +     S L+
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 51/290 (17%), Positives = 94/290 (32%), Gaps = 60/290 (20%)

Query: 397 NFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQ 455
             +  +K L +S   +     + L    +L  L ++ N ++     SF +L SLEHL L 
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108

Query: 456 MNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNYLEGQIPN 513
            N LS  +  + F+  S+L  L+L  N +  +    +   LT L+ L +       +I  
Sbjct: 109 YNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 514 Q-LCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYY 572
           +    L  L  L++  + +  S     ++  +    ++ LH         IF        
Sbjct: 168 KDFAGLTFLEELEIDASDLQ-SYEPK-SLKSIQNVSHLILHMKQHILLLEIF-------- 217

Query: 573 NSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEI 632
                                 VE                    L+L    L     SE+
Sbjct: 218 ----------------VDVTSSVEC-------------------LELRDTDLDTFHFSEL 242

Query: 633 ---------GDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSG 673
                         R + ++   L   +    + +  +  L+ S N+L  
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 39/264 (14%), Positives = 80/264 (30%), Gaps = 51/264 (19%)

Query: 463 IPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLG 522
           IP  L     + +LDL +NR + +    +   + L+ L+L  N +     +    L  L 
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 523 VLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYG 582
            LDLS+N +S ++ S       W      L    L                        G
Sbjct: 104 HLDLSYNYLS-NLSS------SWFKPLSSLTFLNL-----------------------LG 133

Query: 583 NGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNL 642
           N   ++    +           + N                +     + +  L+   L +
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTK----------IQRKDFAGLTFLEE--LEI 181

Query: 643 SYNFLSGSIPGSFSNLKWIESLDLSHNRLS---GQVPPRLTELNF--LSNFNVSFNNLSG 697
             + L    P S  +++ +  L L   +            + +    L + ++   + S 
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 698 LIPDKGQFATFDESSYRGNLHLCG 721
           L    G+  +  +     N+ +  
Sbjct: 242 LST--GETNSLIKKFTFRNVKITD 263

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 72/409 (17%), Positives = 127/409 (31%), Gaps = 75/409 (18%)

Query: 33  ANLTNLKILDLSGCGITTL------QGLTKLKNLEALDLSYNNISGSSESQGVCE-LKN- 84
             L   +++ L  CG+T          L     L  L+L  N + G      V + L+  
Sbjct: 25  PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGLQTP 83

Query: 85  ---LSEFILRGINIK----GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTL-----TS 132
              + +  L+   +     G L   L+ L  L+ L +S N L       +          
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 133 LEYLALLDNNFE---GTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLP 189
           LE L L   +        L + L      + L +S+  N ++      L     + L   
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN--NDINEAGVRVL----CQGLKDS 197

Query: 190 NYNLKVIPSFLLHQYDLKLLDLSGNNL----VGDFPTWVLRNNTKLEALFLTNNSFTGN- 244
              L+              L L    +      D    ++ +   L  L L +N      
Sbjct: 198 PCQLEA-------------LKLESCGVTSDNCRDL-CGIVASKASLRELALGSNKLGDVG 243

Query: 245 ----LQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQK---LLYIDMSDNRFEGYLPSS 297
                         L  L +    +T K   D+  +L+    L  + ++ N         
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303

Query: 298 IGEM-----KALIFLRLPKNNFSGE----LPAPLLTGCISLGLLDLSGNNFYG---QIFP 345
           + E        L  L +   +F+        + +L     L  L +S N       +   
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTAACCSHF-SSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 346 KYM--NLTQLEFLYLENNKFSGK----IEEGLSNSNELNELDISNNLLS 388
           + +    + L  L+L +   S      +   L  ++ L ELD+SNN L 
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 85/518 (16%), Positives = 146/518 (28%), Gaps = 152/518 (29%)

Query: 58  KNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYN 117
            ++++LD+    +S         EL                    L  L   +V+ +   
Sbjct: 3   LDIQSLDIQCEELS----DARWAEL--------------------LPLLQQCQVVRLDDC 38

Query: 118 QLSGT----LPSAITTLTSLEYLALLDNNFEGT---FLLNSLA-NHSKLEVLLLSSRTNM 169
            L+      + SA+    +L  L L  N         +L  L     K++ L L +    
Sbjct: 39  GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN--CC 96

Query: 170 LSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNL----VGDFPTWVL 225
           L+                       V+ S L     L+ L LS N L    +      +L
Sbjct: 97  LTGA------------------GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138

Query: 226 RNNTKLEALFLTNNSFTGN------LQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQ- 278
               +LE L L   S +          L          L VSNN++       +   L+ 
Sbjct: 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD--FKELTVSNNDINEAGVRVLCQGLKD 196

Query: 279 ---KLLYIDMSDNRFE----GYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGL 331
              +L  + +            L   +    +L  L L  N            G   L  
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV-------GMAELCP 249

Query: 332 LDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGK----IEEGLSNSNELNELDISNNLL 387
             L  +             ++L  L++     + K    +   L     L EL ++ N L
Sbjct: 250 GLLHPS-------------SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

Query: 388 SGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLS 447
                        D    L+ +  L+                                  
Sbjct: 297 G------------DEGARLLCETLLEPG-------------------------------C 313

Query: 448 SLEHLYLQMNSLSG----PIPIALFRSSNLITLDLRDNRFSGVIPHQISESL-----TLR 498
            LE L+++  S +          L ++  L+ L + +NR       ++ + L      LR
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 499 FLLLRGNYLEGQ----IPNQLCQLRRLGVLDLSHNRIS 532
            L L    +       +   L     L  LDLS+N + 
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 52/316 (16%), Positives = 96/316 (30%), Gaps = 57/316 (18%)

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRF--EG--YLPSSIGEMKALIFLRLP 310
           +  LD+    L+     ++  +LQ+   + + D          + S++    AL  L L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 311 KNNFSGE----LPAPLLTGCISLGLLDLSGNNF----YGQIFPKYMNLTQLEFLYLENNK 362
            N         +   L T    +  L L          G +      L  L+ L+L +N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 363 FSGK----IEEGLSNSN-ELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIP 417
                   + EGL +    L +L +    LS      + +                    
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV------------------- 165

Query: 418 AQLLNHGSLNLLSVSENCLSGPMTSSF------NLSSLEHLYLQMNSLS----GPIPIAL 467
             L        L+VS N ++             +   LE L L+   ++      +   +
Sbjct: 166 --LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 468 FRSSNLITLDLRDNRFSGVIPHQISESL-----TLRFLLLRGNYLEGQ----IPNQLCQL 518
              ++L  L L  N+   V   ++   L      LR L +    +  +    +   L   
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 519 RRLGVLDLSHNRISGS 534
             L  L L+ N +   
Sbjct: 284 ESLKELSLAGNELGDE 299

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 51/271 (18%), Positives = 84/271 (30%), Gaps = 59/271 (21%)

Query: 31  GFANLTNLKILDLSGCGITTLQGLTKL--------KNLEALDLSYNNISGSSESQGVCEL 82
                 + K L +S   I    G+  L          LEAL L    ++  +     C  
Sbjct: 165 VLRAKPDFKELTVSNNDINE-AGVRVLCQGLKDSPCQLEALKLESCGVTSDN-----CR- 217

Query: 83  KNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGT-----LPSAITTLTSLEYLA 137
                           L   + + + L+ L +  N+L         P  +   + L  L 
Sbjct: 218 ---------------DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 138 LLDNNFE---GTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFL------PTFQLKVLGL 188
           + +          L   L     L+ L L+   N L  +    L      P  QL+ L +
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAG--NELGDEGARLLCETLLEPGCQLESLWV 320

Query: 189 PNYNL-----KVIPSFLLHQYDLKLLDLSGNNL----VGDFPTWVLRNNTKLEALFLTNN 239
            + +          S L     L  L +S N L    V +    + +  + L  L+L + 
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 240 SFT--GNLQLPK--TKHDFLHHLDVSNNNLT 266
             +      L      +  L  LD+SNN L 
Sbjct: 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 47/245 (19%), Positives = 77/245 (31%), Gaps = 51/245 (20%)

Query: 27  FIVVGFANLTNLKILDLSGCGITTLQGLTKL--------KNLEALDLSYNNIS---GSSE 75
            +    A+  +L+ L L    +    G+ +L          L  L +    I+       
Sbjct: 218 DLCGIVASKASLRELALGSNKLGD-VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 76  SQGVCELKNLSEFILRGINIKG----HLPDCLKN-LSHLKVLDISYNQLSGT----LPSA 126
            + +   ++L E  L G  +       L + L      L+ L +     +        S 
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 127 ITTLTSLEYLALLDNNFEGT---FLLNSLA-NHSKLEVLLLSSRTNMLSVKTENFLPTFQ 182
           +     L  L + +N  E      L   L    S L VL L+     +S  + + L    
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD--CDVSDSSCSSLAAT- 393

Query: 183 LKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVL-----RNNTKLEALFLT 237
                     L    S       L+ LDLS N L GD     L     +    LE L L 
Sbjct: 394 ----------LLANHS-------LRELDLSNNCL-GDAGILQLVESVRQPGCLLEQLVLY 435

Query: 238 NNSFT 242
           +  ++
Sbjct: 436 DIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 23/184 (12%)

Query: 374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLK----GNIPAQLLNHGSLNLL 429
           S ++  LDI    LS      +       +V+ +    L      +I + L  + +L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 430 SVSENCLSGPMTSSF------NLSSLEHLYLQMNSLS----GPIPIALFRSSNLITLDLR 479
           ++  N L                  ++ L LQ   L+    G +   L     L  L L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 480 DNRFSGVIPHQISESL-----TLRFLLLRGNYLEGQ----IPNQLCQLRRLGVLDLSHNR 530
           DN         + E L      L  L L    L       + + L        L +S+N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 531 ISGS 534
           I+ +
Sbjct: 182 INEA 185

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 52/214 (24%), Positives = 70/214 (32%), Gaps = 32/214 (14%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
           F    NL IL L    +  +     T L  LE LDLS N             L+++    
Sbjct: 52  FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ-----------LRSVD--- 97

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
                     P     L  L  L +    L    P     L +L+YL L DN  +     
Sbjct: 98  ----------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPD 146

Query: 150 NSLANHSKLEVLLLSSRTNML-SVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQ-YDLK 207
           ++  +   L  L L    N + SV    F     L  L L    +  +          L 
Sbjct: 147 DTFRDLGNLTHLFLHG--NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 208 LLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSF 241
            L L  NNL    PT  L     L+ L L +N +
Sbjct: 205 TLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 57/260 (21%), Positives = 88/260 (33%), Gaps = 40/260 (15%)

Query: 252 HDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPK 311
           ++           L   +P     I      I +  NR      +S    + L  L L  
Sbjct: 10  NEPKVTTSCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 312 NNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPK-YMNLTQLEFLYLENNKFSGKIEEG 370
           N  +  + A   TG   L  LDLS N     + P  +  L +L  L+L+      ++  G
Sbjct: 66  NVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPG 123

Query: 371 -LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNL 428
                  L  L + +N L                            +P       G+L  
Sbjct: 124 LFRGLAALQYLYLQDNALQ--------------------------ALPDDTFRDLGNLTH 157

Query: 429 LSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGV 486
           L +  N +S     +F  L SL+ L L  N ++  +    FR    L+TL L  N  S  
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLS-A 215

Query: 487 IPHQISESLT-LRFLLLRGN 505
           +P +    L  L++L L  N
Sbjct: 216 LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.9 bits (177), Expect = 7e-14
 Identities = 52/240 (21%), Positives = 80/240 (33%), Gaps = 47/240 (19%)

Query: 59  NLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQ 118
             + + L  N IS                                +   +L +L +  N 
Sbjct: 33  ASQRIFLHGNRISHVP-------------------------AASFRACRNLTILWLHSNV 67

Query: 119 LSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNML-SVKTENF 177
           L+    +A T L  LE L L DN    +    +     +L  L L      L  +    F
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR--CGLQELGPGLF 125

Query: 178 LPTFQLKVLGLPNYNLKVIPSFLL-HQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFL 236
                L+ L L +  L+ +P        +L  L L GN +    P    R    L+ L L
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLL 184

Query: 237 TNN--------SFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDN 288
             N        +F     L +     L  L +  NNL+  LP +    L+ L Y+ ++DN
Sbjct: 185 HQNRVAHVHPHAFRD---LGR-----LMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 53/216 (24%), Positives = 81/216 (37%), Gaps = 36/216 (16%)

Query: 328 SLGLLDLSGNNF---YGQIFPKYMNLTQLEFLYLENNKFSGKIEEG-LSNSNELNELDIS 383
           +   + L GN         F        L  L+L +N  + +I+    +    L +LD+S
Sbjct: 33  ASQRIFLHGNRISHVPAASFR---ACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88

Query: 384 NNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSS 443
           +N     +     +    L  L      L               L  +      G     
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTL-----HLDRC-----------GLQELGPGLFRG----- 127

Query: 444 FNLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLT-LRFLL 501
             L++L++LYLQ N+L   +P   FR   NL  L L  NR S  +P +    L  L  LL
Sbjct: 128 --LAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLL 183

Query: 502 LRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
           L  N +    P+    L RL  L L  N +S ++P+
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 15/212 (7%)

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF 314
              + +  N ++  +P       + L  + +  N       ++   +  L  L L  N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 315 SGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEG-L 371
              +      G   L  L L       Q     +   L  L++LYL++N     + +   
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 372 SNSNELNELDISNNLLSGHIPHWIGNFS--SDLKVLLMSKMFLKGNIPAQLLNH-GSLNL 428
            +   L  L +  N +S  +P     F     L  LL+ +  +  ++        G L  
Sbjct: 150 RDLGNLTHLFLHGNRIS-SVPE--RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMT 205

Query: 429 LSVSENCLSGPMTSSF-NLSSLEHLYLQMNSL 459
           L +  N LS   T +   L +L++L L  N  
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 54/229 (23%), Positives = 79/229 (34%), Gaps = 36/229 (15%)

Query: 307 LRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPK-YMNLTQLEFLYLENNKFSG 365
           + L  N  S  +PA     C +L +L L  N    +I    +  L  LE L L +N    
Sbjct: 37  IFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 366 KIEEG-LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH- 423
            ++         L+ L +    L                            +   L    
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQ--------------------------ELGPGLFRGL 128

Query: 424 GSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDN 481
            +L  L + +N L      +F +L +L HL+L  N +S  +P   FR   +L  L L  N
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQN 187

Query: 482 RFSGVIPHQISESLT-LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN 529
           R +  +       L  L  L L  N L       L  LR L  L L+ N
Sbjct: 188 RVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 51/234 (21%), Positives = 83/234 (35%), Gaps = 29/234 (12%)

Query: 107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
           +  + + +  N++S    ++     +L  L L  N         +    + LE L LS  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 167 TNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQ-YDLKLLDLSGNNLVGDFPTWVL 225
             + SV    F    +L  L L    L+ +   L      L+ L L  N L         
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-------- 142

Query: 226 RNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDM 285
                     L +++F     L       L HL +  N ++  +PE     L  L  + +
Sbjct: 143 ---------ALPDDTFRD---LGN-----LTHLFLHGNRIS-SVPERAFRGLHSLDRLLL 184

Query: 286 SDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNF 339
             NR     P +  ++  L+ L L  NN S  LP   L    +L  L L+ N +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 41/192 (21%), Positives = 62/192 (32%), Gaps = 34/192 (17%)

Query: 351 TQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM 410
              + ++L  N+ S            L  L + +N+L+                      
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA---------------------- 69

Query: 411 FLKGNIPAQLLNH-GSLNLLSVSENC-LSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIAL 467
                I A        L  L +S+N  L     ++F  L  L  L+L    L   +   L
Sbjct: 70  ----RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGL 124

Query: 468 FRS-SNLITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNYLEGQIPNQLCQLRRLGVLD 525
           FR  + L  L L+DN     +P      L  L  L L GN +          L  L  L 
Sbjct: 125 FRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 526 LSHNRISGSIPS 537
           L  NR++  +  
Sbjct: 184 LHQNRVA-HVHP 194

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 46/236 (19%), Positives = 90/236 (38%), Gaps = 17/236 (7%)

Query: 31  GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
                      +L    +T      +L +++ +  + ++I      QG+  L N+++  L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFL 75

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLN 150
            G  +    P  L NL +L  L +  N++     S++  L  L+ L+L  N       +N
Sbjct: 76  NGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGIS---DIN 128

Query: 151 SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLD 210
            L +  +LE L L +  N ++          +L  L L +  +  I   L     L+ L 
Sbjct: 129 GLVHLPQLESLYLGN--NKIT-DITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLY 184

Query: 211 LSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLT 266
           LS N++  D     L     L+ L L +          ++     + +  ++ +L 
Sbjct: 185 LSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 29  VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
           +    +L  LK L L   GI+ + GL  L  LE+L L  N I   ++   +  L  L   
Sbjct: 105 LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTL 161

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNN 142
            L    I   +   L  L+ L+ L +S N +S     A+  L +L+ L L    
Sbjct: 162 SLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 211

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 50/256 (19%), Positives = 92/256 (35%), Gaps = 24/256 (9%)

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF 314
               ++   ++T  + ++    L  +  I  +++  +      I  +  +  L L  N  
Sbjct: 26  TIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKL 80

Query: 315 SGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNS 374
           +   P   L    +LG L L  N    +      +L +L+ L LE+N  S  I  GL + 
Sbjct: 81  TDIKP---LANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGIS-DIN-GLVHL 133

Query: 375 NELNELDISNNLLSGHIPHWIGNFS--SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVS 432
            +L  L + NN ++      I   S  + L  L +    +  +I   L     L  L +S
Sbjct: 134 PQLESLYLGNNKITD-----ITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLS 186

Query: 433 ENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQIS 492
           +N +S  + +   L +L+ L L                    T+   D     V P  IS
Sbjct: 187 KNHISD-LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIIS 243

Query: 493 ESLTLRFLLLRGNYLE 508
           +        ++ +  E
Sbjct: 244 DDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 45/286 (15%), Positives = 83/286 (29%), Gaps = 70/286 (24%)

Query: 103 LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLL 162
               +     ++    ++  +      L S++ +   +++ +    +  +     +  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS---VQGIQYLPNVTKLF 74

Query: 163 LSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPT 222
           L+   N L+   +       L  L L    +K + S L     LK L L  N +      
Sbjct: 75  LNG--NKLT-DIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI------ 124

Query: 223 WVLRNNTKLEAL-FLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLL 281
                 + +  L  L                  L  L + NN +T               
Sbjct: 125 ------SDINGLVHLPQ----------------LESLYLGNNKITD-------------- 148

Query: 282 YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG 341
                         + +  +  L  L L  N  S ++    L G   L  L LS N+   
Sbjct: 149 -------------ITVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHI-- 190

Query: 342 QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLL 387
                   L  L+ L L + +   K     SN    N +  ++  L
Sbjct: 191 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 14/184 (7%)

Query: 349 NLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMS 408
              +     L+    +       +  N ++++  +N+ +   +   I    + +  L ++
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPN-VTKLFLN 76

Query: 409 KMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALF 468
              L  +I   L N  +L  L + EN +   ++S  +L  L+ L L+ N +S    +   
Sbjct: 77  GNKLT-DIKP-LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 469 RSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSH 528
               L +L L +N+ + +    +S    L  L L  N +   I   L  L +L  L LS 
Sbjct: 134 --PQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK 187

Query: 529 NRIS 532
           N IS
Sbjct: 188 NHIS 191

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 1e-16
 Identities = 54/254 (21%), Positives = 91/254 (35%), Gaps = 21/254 (8%)

Query: 304 LIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFP---KYMNLTQLEFLYLEN 360
           L +L    +  +       +   +SL  L +       +I     + + ++ L+ L LEN
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 361 NKFSGKI--EEGLSNSNELNELDISNNLLSG---HIPHWIGNFSSDLKVLLMSKMFLKGN 415
            + +G        +   +LN L++ N   +     +          LKVL +++      
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 416 IPAQLLNHGSLNLLSVSENCLSGP-----MTSSFNLSSLEHLYL---QMNSLSGPIPIAL 467
              Q+    +L+ L +S+N   G              +L+ L L    M + SG      
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 468 FRSSNLITLDLRDNRFSGVIPHQISESL-TLRFLLLRGNYLEGQIPNQLCQLRRLGVLDL 526
                L  LDL  N           +    L  L L    L+ Q+P  L    +L VLDL
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDL 281

Query: 527 SHNRISGSIPSCLT 540
           S+NR+    PS   
Sbjct: 282 SYNRLD-RNPSPDE 294

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 2e-16
 Identities = 58/331 (17%), Positives = 103/331 (31%), Gaps = 64/331 (19%)

Query: 47  GITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLK-- 104
           G   ++     ++LE L    +  +   +   + +  +L    +R   I   +       
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 105 -NLSHLKVLDISYNQLSGTLPSAIT--TLTSLEYLALLDNNFEGTFLLNSLANHSKLEVL 161
             +S L+ L +   +++GT P  +   T   L  L L + ++       +     +L+  
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA-----ELQQW 146

Query: 162 LLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQY-DLKLLDLSGNNLVGDF 220
           L                    LKVL +   +        +  +  L  LDLS N  +G+ 
Sbjct: 147 LKPG-----------------LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 221 P---TWVLRNNTKLEALFLTNNSFT---GNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMG 274
                        L+ L L N       G           L  LD+S+N+L         
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 275 IILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDL 334
               +L  +++S    +                         ++P  L      L +LDL
Sbjct: 250 DWPSQLNSLNLSFTGLK-------------------------QVPKGLPA---KLSVLDL 281

Query: 335 SGNNFYGQIFPKYMNLTQLEFLYLENNKFSG 365
           S N       P    L Q+  L L+ N F  
Sbjct: 282 SYNRL--DRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 2e-14
 Identities = 52/272 (19%), Positives = 90/272 (33%), Gaps = 20/272 (7%)

Query: 206 LKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNL---QLPKTKHDFLHHLDVSN 262
           L+ L    +          +  +  L+ L +        +    L       L  L + N
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 263 NNLTGKLP-EDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPK----NNFSGE 317
             +TG  P   +      L  +++ +  +     + + E++  +   L         S  
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 318 LPAPLLTGCISLGLLDLSGNNFYGQIFPKYM----NLTQLEFLYLENNKF---SGKIEEG 370
                +    +L  LDLS N   G+              L+ L L N      SG     
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 371 LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLS 430
            +   +L  LD+S+N L         ++ S L  L +S   LK  +P  L     L++L 
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLPA--KLSVLD 280

Query: 431 VSENCLSGPMTSSFNLSSLEHLYLQMNSLSGP 462
           +S N L     S   L  + +L L+ N     
Sbjct: 281 LSYNRLDR-NPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.9 bits (176), Expect = 9e-14
 Identities = 60/306 (19%), Positives = 94/306 (30%), Gaps = 55/306 (17%)

Query: 404 VLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF----NLSSLEHLYLQMNSL 459
           +L              ++   SL  L+V    +   +         +S L+ L L+   +
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 460 SG--PIPIALFRSSNLITLDLRDNRFSGVIPH----QISESLTLRFLLLRGNYLEGQIPN 513
           +G  P P+      +L  L+LR+  ++         Q      L+ L +   +       
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 514 QLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYN 573
           Q+     L  LDLS N   G       +  L          P LQ  +            
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKF--------PTLQVLAL--------RNA 211

Query: 574 STFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIG 633
                    + + +   QL                        LDLS N L     +   
Sbjct: 212 GMETPSGVCSALAAARVQLQG----------------------LDLSHNSLRDAAGAPSC 249

Query: 634 DL--QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVS 691
           D   Q+  LNLS+  L     G  + L     LDLS+NRL     P   EL  + N ++ 
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR--NPSPDELPQVGNLSLK 304

Query: 692 FNNLSG 697
            N    
Sbjct: 305 GNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.9 bits (171), Expect = 5e-13
 Identities = 50/264 (18%), Positives = 84/264 (31%), Gaps = 32/264 (12%)

Query: 34  NLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
            +   +I      G   + G++ L+ L   +L     +     +      +L+   LR +
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT--GPDLNILNLRNV 131

Query: 94  NIKGHLPDCLK----NLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
           +         +        LKVL I+           +    +L  L L DN   G   L
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 150 NSLANHSKLEVL-LLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKL 208
            S     K   L +L+ R   +                        V  +    +  L+ 
Sbjct: 192 ISALCPLKFPTLQVLALRNAGM-------------------ETPSGVCSALAAARVQLQG 232

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGK 268
           LDLS N+L            ++L +L L+        Q+PK     L  LD+S N L   
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK---QVPKGLPAKLSVLDLSYNRLDR- 288

Query: 269 LPEDMGIILQKLLYIDMSDNRFEG 292
            P      L ++  + +  N F  
Sbjct: 289 NPSPDE--LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 44/232 (18%), Positives = 73/232 (31%), Gaps = 33/232 (14%)

Query: 317 ELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLS---N 373
           EL     +    L  +D   +      F   +    L+ L +   +   +I  G      
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLG---QFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93

Query: 374 SNELNELDISNNLLSGHIPHWIGNFS-SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVS 432
            + L EL + N  ++G  P  +   +  DL +L                   +L  +S +
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNIL-------------------NLRNVSWA 134

Query: 433 ENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQIS 492
                      +    L+ L +            +     L TLDL DN   G      +
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 493 ESL----TLRFLLLRGNYLE---GQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
                  TL+ L LR   +E   G          +L  LDLSHN +  +  +
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 48/269 (17%), Positives = 80/269 (29%), Gaps = 52/269 (19%)

Query: 445 NLSSLEHLYLQMNSLSGPIPIA-LFRSSNLITLDLRDNRFSGVIPHQISESLT---LRFL 500
              SLE+L  ++++ +       + +S +L  L +R  R    I       L    L+ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 501 LLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFF 560
            L    + G  P  L +     +  L+   +S            W+A      +P L+  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVS------WATRDAWLAELQQWLKPGLKVL 154

Query: 561 SAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLS 620
           S     S+         F                                +     LDLS
Sbjct: 155 SIAQAHSLNFSCEQVRVF------------------------------PALST---LDLS 181

Query: 621 CNQLTGGIP-----SEIGDLQIRGLNLSYNF---LSGSIPGSFSNLKWIESLDLSHNRLS 672
            N   G          +    ++ L L        SG      +    ++ LDLSHN L 
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 673 GQVPP-RLTELNFLSNFNVSFNNLSGLIP 700
                      + L++ N+SF  L  +  
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 35/172 (20%), Positives = 56/172 (32%), Gaps = 38/172 (22%)

Query: 7   PKLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGL------------ 54
            +  +   K L    ++ L F          L  LDLS       +GL            
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

Query: 55  ---------------------TKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
                                     L+ LDLS+N++  ++ +        L+   L   
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEG 145
            +K  +P  L   + L VLD+SYN+L      +   L  +  L+L  N F  
Sbjct: 264 GLK-QVPKGL--PAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 52/216 (24%), Positives = 83/216 (38%), Gaps = 37/216 (17%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGV-CELKNLSEF 88
           F +   L++LDLS C I T++      L +L  L L+ N I   S + G    L +L + 
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKL 105

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQL-SGTLPSAITTLTSLEYLALLDNNF---- 143
           +    N+       + +L  LK L++++N + S  LP   + LT+LE+L L  N      
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 144 EGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQ 203
                        ++ +L LS                     L L    +  I      +
Sbjct: 166 CTDL-----RVLHQMPLLNLS---------------------LDLSLNPMNFIQPGAFKE 199

Query: 204 YDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN 239
             LK L L  N L    P  +    T L+ ++L  N
Sbjct: 200 IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.1 bits (162), Expect = 5e-12
 Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 16/208 (7%)

Query: 332 LDLSGNNFYGQIFPKYM-NLTQLEFLYLENNKFSGKIEEGL-SNSNELNELDISNNLLSG 389
           LDLS N     +      +  +L+ L L   +    IE+G   + + L+ L ++ N +  
Sbjct: 33  LDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ- 89

Query: 390 HIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSVSENCL-SGPMTSSF-NL 446
            +     +  S L+ L+  +  L  ++    + H  +L  L+V+ N + S  +   F NL
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 447 SSLEHLYLQMNSLSGPIPIALFRS-SNL----ITLDLRDNRFSGVIPHQISESLTLRFLL 501
           ++LEHL L  N +   I     R    +    ++LDL  N  +  I     + + L+ L 
Sbjct: 149 TNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELA 206

Query: 502 LRGNYLEGQIPNQLCQLRRLGVLDLSHN 529
           L  N L+        +L  L  + L  N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 47/232 (20%), Positives = 78/232 (33%), Gaps = 36/232 (15%)

Query: 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSI-GEMKALIFLRLPKNNFS 315
           +LD+S N L   L         +L  +D+S    +  +       +  L  L L  N   
Sbjct: 32  NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 316 GELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEGL-S 372
             L     +G  SL  L     N        +   +L  L+ L + +N           S
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 373 NSNELNELDISNNLLSGHIPHWIGNFSS--DLKVLLMSKMFLKGNIPAQLLNHGSLNLLS 430
           N   L  LD+S+N +   I     +      + +L +S                    L 
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYC--TDLRVLHQMPLLNLS--------------------LD 183

Query: 431 VSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDN 481
           +S N ++     +F    L+ L L  N L   +P  +F   ++L  + L  N
Sbjct: 184 LSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 58/247 (23%)

Query: 59  NLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQ 118
           + + LDLS+N +             +L                   +   L+VLD+S  +
Sbjct: 29  STKNLDLSFNPLR------------HLG-------------SYSFFSFPELQVLDLSRCE 63

Query: 119 LSGTLPSAITTLTSLEYLALLDNNF----EGTFLLNSLANHSKLEVLLLSSRTNMLSVKT 174
           +      A  +L+ L  L L  N       G F     +  S L+ L+    TN+ S++ 
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-----SGLSSLQKLVAVE-TNLASLEN 117

Query: 175 ENFLPTFQLKVLGLPNYNLKVIPS--FLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLE 232
                   LK L + +  ++      +  +  +L+ LDLS N +        LR   ++ 
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP 176

Query: 233 A----LFLTNNSFTG-------NLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLL 281
                L L+ N            ++        L  L +  N L   +P+ +   L  L 
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIR--------LKELALDTNQLK-SVPDGIFDRLTSLQ 227

Query: 282 YIDMSDN 288
            I +  N
Sbjct: 228 KIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 445 NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLT-LRFLLL 502
           +LS L  L L  N +   + +  F   S+L  L   +   +  + +     L  L+ L +
Sbjct: 74  SLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNV 131

Query: 503 RGNYL-EGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
             N +   ++P     L  L  LDLS N+I  SI  
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SN 472
           N+P       S   L +S N L    + SF +   L+ L L    +   I    ++S S+
Sbjct: 25  NLPF------STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSH 77

Query: 473 LITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRI 531
           L TL L  N     +       L+ L+ L+     L       +  L+ L  L+++HN I
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 532 SGSIPS 537
             S   
Sbjct: 137 Q-SFKL 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 15/185 (8%)

Query: 33  ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG 92
             L N    +L    +T L    +L  ++  +   +NI       G+    NL E  L  
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI---QSLAGMQFFTNLKELHLSH 72

Query: 93  INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSL 152
             I       LK+L+ L+ L ++ N+L             L  L L +N        +SL
Sbjct: 73  NQISD--LSPLKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNELRD---TDSL 124

Query: 153 ANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLS 212
            +   LE+L + +  N L           +L+VL L    +      L     +  +DL+
Sbjct: 125 IHLKNLEILSIRN--NKLK-SIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLT 180

Query: 213 GNNLV 217
           G   V
Sbjct: 181 GQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 42/211 (19%), Positives = 83/211 (39%), Gaps = 16/211 (7%)

Query: 29  VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
           +V    L+ ++  +     I +L G+    NL+ L LS+N I   S+   + +L  L E 
Sbjct: 34  LVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI---SDLSPLKDLTKLEEL 90

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
            +    +K    + + +   L  L +  N+L  T   ++  L +LE L++ +N  +    
Sbjct: 91  SVNRNRLKN--LNGIPSAC-LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS--- 142

Query: 149 LNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKL 208
           +  L   SKLEVL L    N ++  T       ++  + L        P  + +Q +L +
Sbjct: 143 IVMLGFLSKLEVLDLHG--NEIT-NTGGLTRLKKVNWIDLTGQKCVNEP--VKYQPELYI 197

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNN 239
            +   +        + + N        +   
Sbjct: 198 TNTVKDPDGRWISPYYISNGGSYVDGCVLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 5/112 (4%)

Query: 31  GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
              +L NL+IL +    + ++  L  L  LE LDL  N I   + + G+  LK ++   L
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEI---TNTGGLTRLKKVNWIDL 179

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNN 142
            G             L     +     +     P  I+   S     +L   
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 39/203 (19%), Positives = 72/203 (35%), Gaps = 20/203 (9%)

Query: 87  EFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGT 146
           E I R   I    P     L++    ++    ++     +   L+ ++     ++N +  
Sbjct: 1   ESIQRPTPINQVFP--DPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQS- 55

Query: 147 FLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDL 206
             L  +   + L+ L LS   N +S          +L+ L +    LK +         L
Sbjct: 56  --LAGMQFFTNLKELHLSH--NQIS-DLSPLKDLTKLEELSVNRNRLKNLNGIPSAC--L 108

Query: 207 KLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLT 266
             L L  N L        L +   LE L + NN    ++         L  LD+  N +T
Sbjct: 109 SRLFLDNNELRDTDS---LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT 163

Query: 267 GKLPEDMGIILQKLLYIDMSDNR 289
                     L+K+ +ID++  +
Sbjct: 164 NTGGLTR---LKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 34/184 (18%), Positives = 59/184 (32%), Gaps = 37/184 (20%)

Query: 349 NLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMS 408
            L       L     +          + +   +  N+ +                     
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-------------------- 54

Query: 409 KMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALF 468
                 ++   +    +L  L +S N +S  ++   +L+ LE L +  N L     +   
Sbjct: 55  ------SLAG-MQFFTNLKELHLSHNQISD-LSPLKDLTKLEELSVNRNRLKN---LNGI 103

Query: 469 RSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSH 528
            S+ L  L L +N         +     L  L +R N L+  I   L  L +L VLDL  
Sbjct: 104 PSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHG 159

Query: 529 NRIS 532
           N I+
Sbjct: 160 NEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 22/185 (11%)

Query: 206 LKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN---SFTGNLQLPKTKHDFLHHLDVSN 262
           ++  +   +N+        ++  T L+ L L++N     +    L K     L  L V+ 
Sbjct: 43  VQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQISDLSPLKDLTK-----LEELSVNR 94

Query: 263 NNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL 322
           N L   L    GI    L  + + +N        S+  +K L  L +  N     +    
Sbjct: 95  NRLK-NLN---GIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIVM-- 145

Query: 323 LTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDI 382
           L     L +LDL GN            L ++ ++ L   K   +  +        N +  
Sbjct: 146 LGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKD 203

Query: 383 SNNLL 387
            +   
Sbjct: 204 PDGRW 208

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 66.2 bits (162), Expect = 5e-13
 Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 8/126 (6%)

Query: 16  WLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSE 75
            L N+ SN    +         L+ L     G+T++  L KL  L+ L+LS N +SG  E
Sbjct: 23  VLDNSRSNEGK-LEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLE 81

Query: 76  SQGVCELKNLSEFILRGINIK--GHLPDCLKNLSHLKVLDISYN---QLSGTLPSAITTL 130
                   NL+   L G  IK    + + LK L +LK LD+       L+    +    L
Sbjct: 82  VLAEK-CPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139

Query: 131 TSLEYL 136
             L YL
Sbjct: 140 PQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 30/134 (22%)

Query: 34  NLTNLKILDLSGCGITTLQ---GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
             +++K L L        +      + + LE L      ++          + NL     
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---------SIANLP---- 61

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLN 150
                          L+ LK L++S N++SG L        +L +L L  N  +    + 
Sbjct: 62  --------------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE 107

Query: 151 SLANHSKLEVLLLS 164
            L     L+ L L 
Sbjct: 108 PLKKLENLKSLDLF 121

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 55/322 (17%), Positives = 104/322 (32%), Gaps = 72/322 (22%)

Query: 33  ANLTNLKILDLSGCGITT------LQGLTKLKNLEALDLSYNNISGSSESQGVCEL---- 82
           A  + ++   L    ITT         L +  +++ + LS N I G+  ++ + E     
Sbjct: 2   ARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASK 59

Query: 83  KNLSEFILRGINIK----------GHLPDCLKNLSHLKVLDISYNQLSGT----LPSAIT 128
           K+L       I               L   L     L  + +S N    T    L   ++
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 129 TLTSLEYLALLDNNF------------EGTFLLNSLANHSKLEVLLLSSRTNMLSVKT-- 174
             T LE+L L +N              +   +     N   L  ++     N L   +  
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR--NRLENGSMK 177

Query: 175 ---ENFLPTFQLKVLGLPNYNL------KVIPSFLLHQYDLKLLDLSGNNL-------VG 218
              + F     L  + +    +       ++   L +  +LK+LDL  N         + 
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237

Query: 219 DFPTWVLRNNTKLEALFLTNNSFTGN------LQLPKTKHDFLHHLDVSNNNLTGK---- 268
                 L++   L  L L +   +            K ++  L  L +  N +       
Sbjct: 238 I----ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293

Query: 269 LPEDMGIILQKLLYIDMSDNRF 290
           L   +   +  LL+++++ NRF
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 51/309 (16%), Positives = 97/309 (31%), Gaps = 58/309 (18%)

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQK---LLYIDMSDNRF--EG--YLPSSIGEMKALIFL 307
           +    +  + +T +  + +  +L +   +  I +S N    E   +L  +I   K L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 308 RLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGK- 366
               + F+G +   +      L    L                 +L  + L +N F    
Sbjct: 66  EF-SDIFTGRVKDEIPEALRLLLQA-LLKC-------------PKLHTVRLSDNAFGPTA 110

Query: 367 ---IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH 423
              + + LS    L  L + NN L                   +++   +  +  +  N 
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLG------------PQAGAKIARALQELAVNKKAKNA 158

Query: 424 GSLNLLSVSENCLSGPMTSSF-----NLSSLEHLYLQMNSL-----SGPIPIALFRSSNL 473
             L  +    N L       +     +   L  + +  N +        +   L     L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 474 ITLDLRDNRFSGVIPHQISESL----TLRFLLLRGNYL--EG--QIPNQL--CQLRRLGV 523
             LDL+DN F+ +    ++ +L     LR L L    L   G   + +     +   L  
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278

Query: 524 LDLSHNRIS 532
           L L +N I 
Sbjct: 279 LRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 41/246 (16%), Positives = 69/246 (28%), Gaps = 52/246 (21%)

Query: 31  GFANLTNLKILDLSGCGITTL------QGLTKLKNLEALDLSYNNIS------------G 72
                  L  + LS               L+K   LE L L  N +              
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 73  SSESQGVCELKNLSEFILRGINIKG----HLPDCLKNLSHLKVLDISYNQL-----SGTL 123
            + ++       L   I     ++           ++   L  + +  N +        L
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 124 PSAITTLTSLEYLALLDNNF--EGTFLL-NSLANHSKLEVLLLSSRTNMLSVKTENFLPT 180
              +     L+ L L DN F   G+  L  +L +   L  L L+    +LS +    +  
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND--CLLSARGAAAV-- 264

Query: 181 FQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNL----VGDFPTWVLRNNTKLEALFL 236
             +        N+            L+ L L  N +    V    T +      L  L L
Sbjct: 265 --VDAFSKLE-NIG-----------LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310

Query: 237 TNNSFT 242
             N F+
Sbjct: 311 NGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 58/351 (16%), Positives = 111/351 (31%), Gaps = 76/351 (21%)

Query: 203 QYDLKLLDLSGNNLVGDFPTWV---LRNNTKLEALFLTNNSFT--GNLQLPKT--KHDFL 255
           ++ ++   L  + +  +    V   L  +  ++ + L+ N+        L +       L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 256 HHLDVSNN---NLTGKLPEDMGIILQ------KLLYIDMSDNRF--EG--YLPSSIGEMK 302
              + S+     +  ++PE + ++LQ      KL  + +SDN F       L   + +  
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 303 ALIFLRLPKNNFSGE------------LPAPLLTGCISLGLLDLSGNNFYGQ----IFPK 346
            L  L L  N    +                       L  +    N             
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 347 YMNLTQLEFLYLENNKFSGK-----IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSD 401
           + +   L  + +  N    +     + EGL+   EL  LD+ +N  +             
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT------------H 230

Query: 402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLS-------GPMTSSFNLSSLEHLYL 454
           L    ++           L +  +L  L +++  LS           S      L+ L L
Sbjct: 231 LGSSALAIA---------LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281

Query: 455 QMNSLSGPIPIALFRS-----SNLITLDLRDNRFS--GVIPHQISESLTLR 498
           Q N +       L         +L+ L+L  NRFS    +  +I E  + R
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 332

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 26/171 (15%)

Query: 31  GFANLTNLKILDLSGCGITTL-------QGLTKLKNLEALDLSYNNIS--GSSE-SQGVC 80
            F +   L  + +   GI          +GL   + L+ LDL  N  +  GSS  +  + 
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 81  ELKNLSEFILRGINIKG----HLPDCLKNLSH--LKVLDISYNQLSG----TLPSAITT- 129
              NL E  L    +       + D    L +  L+ L + YN++      TL + I   
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301

Query: 130 LTSLEYLALLDNNF--EGTF---LLNSLANHSKLEVLLLSSRTNMLSVKTE 175
           +  L +L L  N F  E      +    +   + E+  L     +   + E
Sbjct: 302 MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEE 352

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 66.3 bits (162), Expect = 8e-13
 Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 19  NNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQG 78
           +N  +    I    A   NL+ L L   G+ ++  L KL  L+ L+LS N I G  +   
Sbjct: 32  DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLA 91

Query: 79  VCELKNLSEFILRGINIK--GHLPDCLKNLSHLKVLDISYN---QLSGTLPSAITTLTSL 133
              L NL+   L G  +K    L + LK L  LK LD+       L+    S    L  L
Sbjct: 92  EK-LPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149

Query: 134 EYL 136
            YL
Sbjct: 150 TYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 32/134 (23%), Positives = 47/134 (35%), Gaps = 29/134 (21%)

Query: 32  FANLTNLKILDLSGCGITTLQGLT-KLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
            A +  L +LD        ++GLT +  NLE L L    +           + NL     
Sbjct: 23  PAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---------SVSNLP---- 68

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLN 150
                          L  LK L++S N++ G L      L +L +L L  N  +    L 
Sbjct: 69  --------------KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE 114

Query: 151 SLANHSKLEVLLLS 164
            L     L+ L L 
Sbjct: 115 PLKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 14/130 (10%)

Query: 185 VLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNL--VGDFPTWVLRNNTKLEALFLTNNSFT 242
           VL     N   I        +L+ L L    L  V + P        KL+ L L+ N   
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKLKKLELSENRIF 84

Query: 243 GNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGII--LQKLLYIDMSDN---RFEGYLPSS 297
           G L +   K   L HL++S N L  K    +  +  L+ L  +D+ +        Y  S 
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKL--KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV 142

Query: 298 IGEMKALIFL 307
              +  L +L
Sbjct: 143 FKLLPQLTYL 152

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 5/137 (3%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
              LTNL  L LS   +  +       + NL  LDLS N++  + +     +L+ L   +
Sbjct: 60  PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL 118

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLD--NNFEGTF 147
           L   +I     +  ++++ L+ L +S NQ+S      I     L  L LLD  +N     
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 148 LLNSLANHSKLEVLLLS 164
            L  L          L 
Sbjct: 179 PLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.2 bits (146), Expect = 9e-10
 Identities = 50/207 (24%), Positives = 73/207 (35%), Gaps = 49/207 (23%)

Query: 192 NLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN--------SFTG 243
            L  +P  L       LLDLS NNL      W     T L +L L++N        +F  
Sbjct: 29  QLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86

Query: 244 NLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKA 303
              +P      L +LD+S+N+L   L E +   LQ L  + + +N               
Sbjct: 87  ---VPN-----LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV------------ 125

Query: 304 LIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNN---FYGQIFPKYMNLTQLEFLYLEN 360
                + +N F        +     L  L LS N    F  ++      L +L  L L +
Sbjct: 126 ----VVDRNAFED------MA---QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172

Query: 361 NKFSGKIEEGLSN--SNELNELDISNN 385
           NK        L    +   N L + NN
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 40/185 (21%)

Query: 332 LDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEG-LSNSNELNELDISNNLLS 388
           LDLS NN   ++  ++    LT L  L L +N  +  I          L  LD+S+N L 
Sbjct: 44  LDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 389 GHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSVSENCLSGPMTSSF-NL 446
                                      +   L +   +L +L +  N +     ++F ++
Sbjct: 102 --------------------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135

Query: 447 SSLEHLYLQMNSLSGPIPIALFRS----SNLITLDLRDNRFSGVIPHQIS--ESLTLRFL 500
           + L+ LYL  N +S   P+ L +       L+ LDL  N+   +    +    +     L
Sbjct: 136 AQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

Query: 501 LLRGN 505
            L  N
Sbjct: 195 YLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 13/167 (7%)

Query: 397 NFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNL--LSVSENCLSGPMTSSF-NLSSLEHLY 453
           +  S   +L +S   L   + A+       NL  L +S N L+   + +F  + +L +L 
Sbjct: 36  SLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 454 LQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNYLEGQI 511
           L  N L   +   LF     L  L L +N    V+     E +  L+ L L  N +  + 
Sbjct: 95  LSSNHLHT-LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 512 PNQ----LCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHE 554
           P +      +L +L +LDLS N++     + L  +  WV   +YLH 
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 48/212 (22%), Positives = 73/212 (34%), Gaps = 42/212 (19%)

Query: 46  CGITTL----QGLTKL-----KNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIK 96
           C    L    Q L  +          LDLS+NN+S          L NL   +L   ++ 
Sbjct: 18  CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 97  GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHS 156
               +    + +L+ LD+S N L        + L +LE L L +N+      +  +  ++
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH------IVVVDRNA 131

Query: 157 KLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYD----LKLLDLS 212
                               F    QL+ L L    +   P  L+   +    L LLDLS
Sbjct: 132 --------------------FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171

Query: 213 GNNLVGDFPTWVLRNNTKL--EALFLTNNSFT 242
            N L    P   L+         L+L NN   
Sbjct: 172 SNKL-KKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 617 LDLSCNQLTGGIPSEI--GDLQIRGLNLSYNFLSGSIP-GSFSNLKWIESLDLSHNRLSG 673
           LDLS N L   +   +      +  L L  N +   +   +F ++  ++ L LS N++S 
Sbjct: 93  LDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS- 149

Query: 674 QVPPR----LTELNFLSNFNVSFNNLSGLIPD 701
           + P        +L  L   ++S N L  L   
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.0 bits (168), Expect = 3e-12
 Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 37/186 (19%)

Query: 8   KLEQRSNKWL---FNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALD 64
            L+           +  S  L    V      ++++L L+   +T L  L +L  +  LD
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLD 469

Query: 65  LSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLP 124
           LS+N +                            LP  L  L  L+VL  S N L   + 
Sbjct: 470 LSHNRLR--------------------------ALPPALAALRCLEVLQASDNALE-NVD 502

Query: 125 SAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLS----SRTNMLSVKTENFLPT 180
             +  L  L+ L L +N  + +  +  L +  +L +L L      +   +  +    LP 
Sbjct: 503 G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP- 560

Query: 181 FQLKVL 186
             +  +
Sbjct: 561 -SVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.5 bits (159), Expect = 4e-11
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 22  SNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCE 81
            N L  +    A L  L++L  S   +  + G+  L  L+ L L  N +  S+  Q +  
Sbjct: 472 HNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 82  LKNLSEFILRG---INIKGHLPDCLKNLSHLKVLD 113
              L    L+G      +G      + L  +  + 
Sbjct: 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 3e-07
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 617 LDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV 675
           L L+   LT  +   +  L  +  L+LS+N L  ++P + + L+ +E L  S N L   V
Sbjct: 446 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV 501

Query: 676 PPRLTELNFLSNFNVSFNNLSGL 698
              +  L  L    +  N L   
Sbjct: 502 DG-VANLPRLQELLLCNNRLQQS 523

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 47/289 (16%), Positives = 87/289 (30%), Gaps = 15/289 (5%)

Query: 251 KHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYI-----DMSDNRFEGYLPSSIGEMKALI 305
            HD L  + VS       +     + +   +       D +    E   P        + 
Sbjct: 241 PHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVW 300

Query: 306 FLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYL--ENNKF 363
              LP  + + +LP        +             +      +    E L+    + + 
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360

Query: 364 SGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH 423
           S  ++  L +  EL EL+  N      I   I    +   +L   +     +    +   
Sbjct: 361 STVLQSELESCKELQELEPENKWCLLTI---ILLMRALDPLLYEKETLQYFSTLKAVDPM 417

Query: 424 GSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRF 483
            +  L  +    L          + +  L+L    L+    +       +  LDL  NR 
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQL--LLVTHLDLSHNRL 475

Query: 484 SGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS 532
              +P  ++    L  L    N LE  +   +  L RL  L L +NR+ 
Sbjct: 476 R-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 10/226 (4%)

Query: 326 CISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNN 385
              L    L+           +      +   L  ++      +  +   +L   ++S  
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRCELSVE 359

Query: 386 LLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFN 445
             +  +   + +   +L+ L     +    I   +     L     +    S        
Sbjct: 360 KST-VLQSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP- 416

Query: 446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN 505
                +L    +       +     +++  L L     + V+ H + + L +  L L  N
Sbjct: 417 -MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHN 473

Query: 506 YLEGQIPNQLCQLRRLGVLDLSHNRIS--GSIPSCLTIMLLWVAGN 549
            L   +P  L  LR L VL  S N +     + +   +  L +  N
Sbjct: 474 RLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 518

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 5e-06
 Identities = 39/240 (16%), Positives = 76/240 (31%), Gaps = 25/240 (10%)

Query: 34  NLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
           + +  + + L        +     + L   +LS    +        C  K L E      
Sbjct: 325 SDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESC--KELQELEPENK 382

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLN--- 150
                +   ++ L  L     +    S        TL +++ +     +   +  L    
Sbjct: 383 WCLLTIILLMRALDPLLYEKETLQYFS--------TLKAVDPMRAAYLDDLRSKFLLENS 434

Query: 151 -SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLL 209
                ++ + VL L+     L+    +      +  L L +  L+ +P  L     L++L
Sbjct: 435 VLKMEYADVRVLHLAH--KDLT-VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL 491

Query: 210 DLSGNNLVGDFPTWVLRNNTKLEALFLTNN---SFTGNLQLPKTKHDFLHHLDVSNNNLT 266
             S N L  +     + N  +L+ L L NN          L       L  L++  N+L 
Sbjct: 492 QASDNALE-NVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPR--LVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.6 bits (115), Expect = 6e-06
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 604 ELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIE 662
            L +   +  +  LDLS N+L   +P  +  L+ +  L  S N L  ++ G  +NL  ++
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQ 511

Query: 663 SLDLSHNRLSG-QVPPRLTELNFLSNFNVSFNNLS 696
            L L +NRL        L     L   N+  N+L 
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 5/136 (3%)

Query: 28  IVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSE 87
           +    + L   K L LS   I  +  L+ ++NL  L L  N I        V     L E
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVA--DTLEE 97

Query: 88  FILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLP-SAITTLTSLEYLALLDNNFEGT 146
             +    I   L   ++ L +L+VL +S N+++       +  L  LE L L  N     
Sbjct: 98  LWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 147 FLLNSLANHSKLEVLL 162
           +  N+  +  ++EV+ 
Sbjct: 156 YKENNATSEYRIEVVK 171

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 11/109 (10%)

Query: 15  KWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSS 74
           + L +   N++  I    A    L+ L +S   I +L G+ KL NL  L +S N I+   
Sbjct: 73  RIL-SLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWG 131

Query: 75  ESQGVCELKNLSEFILRG----------INIKGHLPDCLKNLSHLKVLD 113
           E   +  L  L + +L G               +  + +K L +LK LD
Sbjct: 132 EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 48/188 (25%), Positives = 64/188 (34%), Gaps = 38/188 (20%)

Query: 32  FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILR 91
               T L  L+L    +T LQ    L  L  LDLS+N +                     
Sbjct: 51  LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-------------------- 90

Query: 92  GINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNF----EGTF 147
                  LP   + L  L VLD+S+N+L+     A+  L  L+ L L  N       G  
Sbjct: 91  ------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 148 LLNSLANHSKLEVLLLSSRTNML-SVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDL 206
                    KLE L L++  N L  +          L  L L   +L  IP      + L
Sbjct: 145 -----TPTPKLEKLSLAN--NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

Query: 207 KLLDLSGN 214
               L GN
Sbjct: 198 PFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 48/181 (26%), Positives = 65/181 (35%), Gaps = 17/181 (9%)

Query: 307 LRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGK 366
           L L +N          L     L  L+L               L  L  L L +N+    
Sbjct: 36  LHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-S 91

Query: 367 IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGN----IPAQLLN 422
           +         L  LD+S N L+  +P        +L+ L     +LKGN    +P  LL 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL-----YLKGNELKTLPPGLLT 145

Query: 423 H-GSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRD 480
               L  LS++ N L+         L +L+ L LQ NSL   IP   F S  L    L  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

Query: 481 N 481
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 46/186 (24%), Positives = 64/186 (34%), Gaps = 15/186 (8%)

Query: 107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
               +L +S N L     + +   T L  L L          L        L  L LS  
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSH- 86

Query: 167 TNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQ-YDLKLLDLSGNNLVGDFPTWVL 225
            N L            L VL +    L  +P   L    +L+ L L GN L    P  +L
Sbjct: 87  -NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLL 144

Query: 226 RNNTKLEALFLTNNSFTGNLQLPKTKHDFLH---HLDVSNNNLTGKLPEDMGIILQKLLY 282
               KLE L L NN+ T   +LP    + L     L +  N+L   +P+        L +
Sbjct: 145 TPTPKLEKLSLANNNLT---ELPAGLLNGLENLDTLLLQENSLYT-IPKGF-FGSHLLPF 199

Query: 283 IDMSDN 288
             +  N
Sbjct: 200 AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 54/238 (22%), Positives = 77/238 (32%), Gaps = 51/238 (21%)

Query: 32  FANLTNLKILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
            + + +   ++     +T L   L   K+   L LS N +   S                
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFS---------------- 47

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLN 150
                       L   + L  L++   +L+  L     TL  L  L L  N      L  
Sbjct: 48  ---------LATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQL--QSLPL 94

Query: 151 SLANHSKLEVLLLSSRTNMLSVKTENFLP--TF----QLKVLGLPNYNLKVIPSFLL-HQ 203
                  L VL +S   N L+      LP        +L+ L L    LK +P  LL   
Sbjct: 95  LGQTLPALTVLDVSF--NRLTS-----LPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 204 YDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFT----GNLQLPKTKHDFLHH 257
             L+ L L+ NNL  + P  +L     L+ L L  NS      G          FLH 
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 48/194 (24%), Positives = 71/194 (36%), Gaps = 22/194 (11%)

Query: 206 LKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHD---FLHHLDVSN 262
              ++    NL    P  + ++      L L+ N                  L  L++  
Sbjct: 12  HLEVNCDKRNL-TALPPDLPKD---TTILHLSENLLY---TFSLATLMPYTRLTQLNLDR 64

Query: 263 NNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL 322
             LT KL  D    L  L  +D+S N+ +  LP     + AL  L +  N  +  LP   
Sbjct: 65  AELT-KLQVDGT--LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

Query: 323 LTGCISLGLLDLSGNNFYGQIFPK--YMNLTQLEFLYLENNKFSGKIEEGL-SNSNELNE 379
           L G   L  L L GN    +  P        +LE L L NN  + ++  GL +    L+ 
Sbjct: 120 LRGLGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 176

Query: 380 LDISNNLLSGHIPH 393
           L +  N L   IP 
Sbjct: 177 LLLQENSLY-TIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 9/167 (5%)

Query: 372 SNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSV 431
           S      E++     L+  +P    +   D  +L +S+  L     A L+ +  L  L++
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 432 SENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQI 491
               L+        L  L  L L  N L   +P+       L  LD+  NR +  +P   
Sbjct: 63  DRAELTKLQVDG-TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

Query: 492 SESLT-LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
              L  L+ L L+GN L+   P  L    +L  L L++N ++  +P+
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 617 LDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVP 676
           L+L   +LT  +  +     +  L+LS+N L  S+P     L  +  LD+S NRL+  +P
Sbjct: 60  LNLDRAELTK-LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 116

Query: 677 P----RLTELNFLSNFNVSFNNLSGLIPD 701
                 L EL  L    +  N L  L P 
Sbjct: 117 LGALRGLGELQELY---LKGNELKTLPPG 142

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 41/209 (19%), Positives = 75/209 (35%), Gaps = 13/209 (6%)

Query: 35  LTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG 92
             + + L L    + T+     + L N+  + +S +      ES     L  ++   +R 
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 93  INIKGHLP-DCLKNLSHLKVLDISYNQLSGTLP--SAITTLTSLEYLALLDNNFEGTFLL 149
                ++  D LK L  LK L I    L    P  + + +      L + DN +  +  +
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 150 NSLAN-HSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLP-NYNLKVIPSFLLH--QYD 205
           N+     ++   L L +  N  +          +L  + L  N  L VI           
Sbjct: 149 NAFQGLCNETLTLKLYN--NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 206 LKLLDLSGNNLVGDFPTWVLRNNTKLEAL 234
             LLD+S  ++    P+  L +  +L A 
Sbjct: 207 PSLLDVSQTSVT-ALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 36/240 (15%), Positives = 73/240 (30%), Gaps = 56/240 (23%)

Query: 304 LIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKY-MNLTQLEFLYLENNK 362
              L+L + +    +P+   +   ++  + +S +    Q+      NL+++  + + N +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 363 FSGKIEEG-LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL 421
               I+   L     L  L I N  L    P                             
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPD---------------------------- 122

Query: 422 NHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFR--SSNLITLDLR 479
                             +T  ++      L +  N     IP+  F+   +  +TL L 
Sbjct: 123 ------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164

Query: 480 DNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQ--LRRLGVLDLSHNRISGSIPS 537
           +N F+  +         L  + L  N     I             +LD+S   ++ ++PS
Sbjct: 165 NNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 10/232 (4%)

Query: 36  TNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINI 95
              +   ++   I  +  L    + + L L   ++  +  S     L N+S   +     
Sbjct: 11  HQEEDFRVTCKDIQRIPSL--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVT 67

Query: 96  KGHLP-DCLKNLSHLKVLDISYNQLSGTLPS-AITTLTSLEYLALLDNNFEGTFLLNSLA 153
              L      NLS +  ++I   +    +   A+  L  L++L + +   +    L  + 
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY 127

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFLP-TFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLS 212
           +     +L ++    M S+    F     +   L L N     +  +  +   L  + L+
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187

Query: 213 GNNLVGDFPTWVLRN-NTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNN 263
            N  +            +    L ++  S T    LP    + L  L   N 
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT---ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 36/255 (14%), Positives = 79/255 (30%), Gaps = 37/255 (14%)

Query: 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG 316
              V+  ++  ++P     +      + + +         +   +  +  + +  +    
Sbjct: 15  DFRVTCKDIQ-RIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 317 ELPAPLLTGCISLGLLDLSGNNFYGQIFPK-YMNLTQLEFLYLENNKFSGKIEEG--LSN 373
           +L +        +  +++        I P     L  L+FL + N        +   + +
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYS 128

Query: 374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSE 433
           ++    L+I++N     IP                      N    L N      L +  
Sbjct: 129 TDIFFILEITDNPYMTSIPV---------------------NAFQGLCNE--TLTLKLYN 165

Query: 434 NCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFR--SSNLITLDLRDNRFSGVIPHQI 491
           N  +     +FN + L+ +YL  N     I    F    S    LD+     +  +P + 
Sbjct: 166 NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG 224

Query: 492 SESLTLRFLLLRGNY 506
            E L    L+ R  +
Sbjct: 225 LEHLK--ELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 17/218 (7%)

Query: 106 LSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSS 165
               + L +    L      A + L ++  + +  +        +S  N SK+  + + +
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 166 RTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP--SFLLHQYDLKLLDLSGNNLVGDFPTW 223
             N+  +  +       LK LG+ N  LK+ P  + +       +L+++ N  +   P  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 224 VLRN-NTKLEALFLTNNSFT----GNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQ 278
             +    +   L L NN FT          K     L  + ++ N     + +D    + 
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-----LDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 279 KLL-YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFS 315
                +D+S       LPS    ++ L  L   +N ++
Sbjct: 205 SGPSLLDVSQTSVT-ALPSKG--LEHLKELIA-RNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 25/180 (13%), Positives = 60/180 (33%), Gaps = 32/180 (17%)

Query: 16  WLFNNASNILFFIVVG-FANLTNLKILDLSGCGITTLQGLTKLKNLEA---LDLSYNNIS 71
            + N     L +I       L  LK L +   G+     LTK+ + +    L+++ N   
Sbjct: 86  EIRNT--RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP-- 141

Query: 72  GSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLT 131
                     + ++     +G+             +    L +  N  + ++       T
Sbjct: 142 ---------YMTSIPVNAFQGLC------------NETLTLKLYNNGFT-SVQGYAFNGT 179

Query: 132 SLEYLALLDNNFEGTFLLNSLAN-HSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPN 190
            L+ + L  N +      ++    +S   +L +S  T++ ++ ++      +L       
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 34/259 (13%), Positives = 70/259 (27%), Gaps = 65/259 (25%)

Query: 446 LSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLT-LRFLLLR 503
             S + L L    L   IP   F +  N+  + +  +     +      +L+ +  + +R
Sbjct: 30  PPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 504 GNYLEGQIPNQLCQ-LRRLGVLDLSHNRIS-----GSIPSCLTIMLLWVAGNVYLHEPYL 557
                  I     + L  L  L + +  +        + S     +L +  N Y+    +
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 558 QFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGL 617
             F                                     +      L            
Sbjct: 149 NAFQG-----------------------------------LCNETLTLK----------- 162

Query: 618 DLSCNQLTGGIPSEI-GDLQIRGLNLSYNFLSGSIP-GSFSNLK-WIESLDLSHNRLSGQ 674
            L  N  T  +        ++  + L+ N     I   +F  +      LD+S   ++  
Sbjct: 163 -LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-A 219

Query: 675 VPPR----LTELNFLSNFN 689
           +P +    L EL   + + 
Sbjct: 220 LPSKGLEHLKELIARNTWT 238

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.9 bits (156), Expect = 7e-12
 Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 33  ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG 92
           A L     +D S   I  L G   L+ L+ L ++ N I    E      L +L+E IL  
Sbjct: 39  ATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLD-QALPDLTELILTN 97

Query: 93  INIK--GHLPDCLKNLSHLKVLDISYN---QLSGTLPSAITTLTSLEYL 136
            ++   G L D L +L  L  L I  N            I  +  +  L
Sbjct: 98  NSLVELGDL-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 28/135 (20%)

Query: 31  GFANLTNLKILDLSGCGITTLQGLTK-LKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
            + N    + LDL G  I  ++ L   L   +A+D S N I          +L       
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR---------KLDGFP--- 61

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
                           L  LK L ++ N++          L  L  L L +N+      L
Sbjct: 62  ---------------LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL 106

Query: 150 NSLANHSKLEVLLLS 164
           + LA+   L  L + 
Sbjct: 107 DPLASLKSLTYLCIL 121

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 20/145 (13%)

Query: 173 KTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNL--VGDFPTWVLRNNTK 230
           +   +    + + L L  Y + VI +          +D S N +  +  FP        +
Sbjct: 11  QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP-----LLRR 65

Query: 231 LEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGII-----LQKLLYIDM 285
           L+ L + NN      +        L  L ++NN+L      ++G +     L+ L Y+ +
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-----VELGDLDPLASLKSLTYLCI 120

Query: 286 SDN---RFEGYLPSSIGEMKALIFL 307
             N     + Y    I ++  +  L
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 345 PKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSS--DL 402
            +Y N  +   L L   K    IE   +  ++ + +D S+N +       +  F     L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-----LDGFPLLRRL 66

Query: 403 KVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF--NLSSLEHLYLQMN 457
           K LL++   +             L  L ++ N L          +L SL +L +  N
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 12/111 (10%)

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDN---RFEGYLPSSIGEMKALIFLRLPK 311
              LD+    +   + E++G  L +   ID SDN   + +G        ++ L  L +  
Sbjct: 21  DRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLDG-----FPLLRRLKTLLVNN 73

Query: 312 NNFSGELPAPLLTGCISLGLLDLSGNNFYG-QIFPKYMNLTQLEFLYLENN 361
           N     +   L      L  L L+ N+           +L  L +L +  N
Sbjct: 74  NRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 62.3 bits (151), Expect = 4e-10
 Identities = 70/473 (14%), Positives = 144/473 (30%), Gaps = 47/473 (9%)

Query: 33  ANLTNLKILDLSGCGIT----TLQGLTKLKNLEALDLSY-NNISGSSESQGVCELKNLSE 87
            NL  LK +      ++          +  +LE L L   +  +       V   + +  
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168

Query: 88  FILRG---INIKGH-LPDCLKNLSHLKVLDISYNQLSGTLPSAITTL----TSLEYLALL 139
            ++         G  L +  ++ + L+VL+    + +   P  + T+     SL  + + 
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV- 227

Query: 140 DNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSV--KTENFLPTFQLKVLGLPNYNLKVIP 197
             +FE   L+      + LE     S    + +  K  N +   +L  LGL       +P
Sbjct: 228 -GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP 286

Query: 198 SFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN-SFTGNLQLPKTKHDFLH 256
                   ++ LDL    L  +    +++    LE L   N     G   L +     L 
Sbjct: 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ-LK 345

Query: 257 HLDVSNNNLTGKLPEDMGII-----------LQKLLYIDMSDNRF--EG--YLPSSIGEM 301
            L +        + ++ G++            Q+L Y+ +  +    E    + + +  +
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL 405

Query: 302 KALIFLRLPKNNFSGELP-----APLLTGCISLGLLDLSGN-NFYGQIFPKY--MNLTQL 353
                + L +     +LP       LL GC  L              +   Y       +
Sbjct: 406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465

Query: 354 EFLYLENNKFSGK-IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFL 412
            ++ L     S + + E       L +L++     S             L+ L +     
Sbjct: 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

Query: 413 KGN---IPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGP 462
                 +      + ++ L+                +    H+     SL+G 
Sbjct: 526 SMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILA-YYSLAGQ 577

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCE-LKNLSEF 88
           F+    L+ +DLS   I+ L       L++L +L L  N I+     + + E L +L   
Sbjct: 52  FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT--ELPKSLFEGLFSLQLL 109

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFE 144
           +L    I     D  ++L +L +L +  N+L        + L +++ + L  N F 
Sbjct: 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 8/131 (6%)

Query: 258 LDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSI-GEMKALIFLRLPKNNFSG 316
           + +  N +   +P       +KL  ID+S+N+    L       +++L  L L  N  + 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 317 ELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEGLSNS 374
           ELP  L  G  SL LL L+ N             +L  L  L L +NK     +   S  
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKI--NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 375 NELNELDISNN 385
             +  + ++ N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 14/138 (10%)

Query: 110 KVLDISYNQLSGTLPSAITTLTSLEYLALLDNNF----EGTFLLNSLANHSKLEVLLLSS 165
             + +  N +    P A +    L  + L +N         F    L +   L  L+L  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRS---LNSLVLYG 89

Query: 166 RTNML-SVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQ-YDLKLLDLSGNNLVGDFPTW 223
             N +  +    F   F L++L L    +  +        ++L LL L  N L       
Sbjct: 90  --NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL-QTIAKG 146

Query: 224 VLRNNTKLEALFLTNNSF 241
                  ++ + L  N F
Sbjct: 147 TFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 445 NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLT-LRFLLL 502
               L  + L  N +S  +    F+   +L +L L  N+ +  +P  + E L  L+ LLL
Sbjct: 54  PYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111

Query: 503 RGNYLEGQIPNQL-CQLRRLGVLDLSHNRISGSIP 536
             N +   +       L  L +L L  N++  +I 
Sbjct: 112 NANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIA 144

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 32/154 (20%)

Query: 332 LDLSGNNFYGQIFPKY-MNLTQLEFLYLENNKFSGKIEEGL-SNSNELNELDISNNLLSG 389
           + L  N     I P       +L  + L NN+ S ++          LN L +  N ++ 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 390 HIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSVSENCLSGPMTSSF-NLS 447
                                     +P  L     SL LL ++ N ++     +F +L 
Sbjct: 94  -------------------------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH 128

Query: 448 SLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN 481
           +L  L L  N L             + T+ L  N
Sbjct: 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCE-LKNLSEF 88
           F  L  L+ ++ S   IT ++         +  + L+ N +   +    + + L++L   
Sbjct: 53  FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE--NVQHKMFKGLESLKTL 110

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNF 143
           +LR   I     D    LS +++L +  NQ++   P A  TL SL  L LL N F
Sbjct: 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 35/156 (22%)

Query: 332 LDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFSGKIEEG-LSNSNELNELDISNNLLS 388
           L L+ N F   +    +   L QL  +   NNK +  IEEG    ++ +NE+ +++N L 
Sbjct: 37  LRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE 94

Query: 389 GHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSVSENCLSGPMTSSF-NL 446
                                     N+  ++     SL  L +  N ++     SF  L
Sbjct: 95  --------------------------NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL 128

Query: 447 SSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDN 481
           SS+  L L  N ++  +    F +  +L TL+L  N
Sbjct: 129 SSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 15/84 (17%), Positives = 27/84 (32%)

Query: 59  NLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQ 118
               L L+ N  +    +    +L  L +       I        +  S +  + ++ N+
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 119 LSGTLPSAITTLTSLEYLALLDNN 142
           L          L SL+ L L  N 
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNR 116

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 429 LSVSENCLSG-PMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSG 485
           L ++ N  +    T  F  L  L  +    N ++  I    F   S +  + L  NR   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLEN 95

Query: 486 VIPHQISESLT-LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
            + H++ + L  L+ L+LR N +     +    L  + +L L  N+I+ ++ 
Sbjct: 96  -VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 447 SSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLT-LRFLLLRG 504
                L L  N  +      +F+    L  ++  +N+ +  I     E  + +  +LL  
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
           N LE         L  L  L L  NRI+  + +
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRIT-CVGN 122

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 53/188 (28%), Positives = 77/188 (40%), Gaps = 18/188 (9%)

Query: 36  TNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVC-ELKNLSEFILRG 92
            + K LDL    +++L      +L  L  L L+ N +   +   G+  ELKNL    +  
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTD 94

Query: 93  INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNF----EGTFL 148
             ++         L +L  L +  NQL    P    +LT L YL+L  N      +G F 
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF- 153

Query: 149 LNSLANHSKLEVLLLSSRTNML-SVKTENFLPTFQLKVLGLPNYNLKVIPSFLL-HQYDL 206
            + L +   L+ L L +  N L  V    F    +LK L L N  LK +P         L
Sbjct: 154 -DKLTS---LKELRLYN--NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

Query: 207 KLLDLSGN 214
           K+L L  N
Sbjct: 208 KMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 6/137 (4%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCE-LKNLSEF 88
           F  L NL+ L ++   +  L      +L NL  L L  N +   S    V + L  L+  
Sbjct: 81  FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL--KSLPPRVFDSLTKLTYL 138

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
            L    ++         L+ LK L +  NQL      A   LT L+ L L +N  +    
Sbjct: 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197

Query: 149 LNSLANHSKLEVLLLSS 165
             +  +  KL++L L  
Sbjct: 198 EGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 51/188 (27%), Positives = 70/188 (37%), Gaps = 27/188 (14%)

Query: 307 LRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYM--NLTQLEFLYLENNKFS 364
           L L  N  S  LP+        L LL L+ N    Q  P  +   L  LE L++ +NK  
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 365 ---GKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSS--DLKVLLMSKMFLKGN---- 415
                + + L N   L EL +  N L   +P     F S   L  L      L  N    
Sbjct: 99  ALPIGVFDQLVN---LAELRLDRNQLK-SLPP--RVFDSLTKLTYL-----SLGYNELQS 147

Query: 416 IPAQLLNH-GSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNL 473
           +P  + +   SL  L +  N L      +F  L+ L+ L L  N L      A      L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

Query: 474 ITLDLRDN 481
             L L++N
Sbjct: 208 KMLQLQEN 215

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 63/346 (18%), Positives = 109/346 (31%), Gaps = 58/346 (16%)

Query: 103 LKNLSHLKVLDISYNQLSGTLPSAI-----TTLTSLEYLALLDNNF--EGTFLLNSL--A 153
                 +  LD+S N L       +      T  S+  L L  N+   + +  L  +  A
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFL------PTFQLKVLGLPNYNL-----KVIPSFLLH 202
             + +  L LS   N LS K+ + L        F + VL L   +              +
Sbjct: 78  IPANVTSLNLSG--NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 203 QY-DLKLLDLSGNNLVGDFPTWVL-----RNNTKLEALFLTNNSFT--GNLQLP---KTK 251
               +  L+L GN+L G   +  L          + +L L  N+       +L     + 
Sbjct: 136 LPASITSLNLRGNDL-GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 252 HDFLHHLDVSNNNLTGKLPEDMGIILQ----KLLYIDMSDNRFEG----YLPSSIGEMKA 303
              +  LD+S N L  K   ++  I       ++ +++  N   G     L      +K 
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254

Query: 304 LIFLRLPKNNFSGELP------APLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQ----- 352
           L  + L  +                      + L+D +G   +        NL +     
Sbjct: 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGK 314

Query: 353 LEFLYLENN-----KFSGKIEEGLSNSNELNELDISNNLLSGHIPH 393
            +   L N      +      E L+  +EL E   +   L  H  H
Sbjct: 315 ADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEHHHH 360

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 49/290 (16%), Positives = 94/290 (32%), Gaps = 69/290 (23%)

Query: 33  ANLTNLKILDLSGCGITTLQGLTKL--------KNLEALDLSYNNISGSSESQGVCEL-- 82
           A   N+  L+LSG  ++  +   +L          +  LDL +N+ S    S+   E   
Sbjct: 77  AIPANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFS----SKSSSEFKQ 131

Query: 83  ------KNLSEFILRG--INIKG--HLPDCLKNL-SHLKVLDISYNQ--------LSGTL 123
                  +++   LRG  + IK    L   L  + +++  L++  N         L+  L
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL 191

Query: 124 PSAITTLTSLEYLALLDNNF---EGTFLLNSL--ANHSKLEVLLLSSRTNMLSVKTENFL 178
            S   ++TSL+    L  N    +    L  +  +  + +  L L    N L   +   L
Sbjct: 192 ASIPASVTSLD----LSANLLGLKSYAELAYIFSSIPNHVVSLNLCL--NCLHGPSLENL 245

Query: 179 PTF-----QLKVLGLPNYNL--------KVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVL 225
                    L+ + L    +        K + +   +   + L+D +G  +     +  +
Sbjct: 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI-HPSHSIPI 304

Query: 226 -----RNNTKLEALFLTNNSFT-----GNLQLPKTKHDFLHHLDVSNNNL 265
                  + K +   L N                   D L     +   L
Sbjct: 305 SNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 62/396 (15%), Positives = 111/396 (28%), Gaps = 97/396 (24%)

Query: 190 NYNL------KVIPSFLLHQYDLKLLDLSGNNL----VGDFPTWVLRNNTKLEALFLTNN 239
           NY L        +  F    + +  LDLS NNL      +           + +L L+ N
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 240 SFTGN--------LQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQ----KLLYIDMSD 287
           S            L         +  L++S N L+ K  +++   L      +  +D+  
Sbjct: 62  SLGFKNSDELVQILAAIPAN---VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW 118

Query: 288 NRFEGYLPSSIGEM-----KALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQ 342
           N F     S   +       ++  L L  N+   +           L  + L+       
Sbjct: 119 NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-------SSDELIQI-LAAIP---- 166

Query: 343 IFPKYMNLTQLEFLYLENNKFSGK----IEEGLSNSNE-LNELDISNNLLSGHIPHWIGN 397
                     +  L L  N  + K    + + L++    +  LD+S NLL          
Sbjct: 167 --------ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL---------- 208

Query: 398 FSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-----NLSSLEHL 452
                    ++ +F              +  L++  NCL GP   +      +L  L+ +
Sbjct: 209 --GLKSYAELAYIFSS--------IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 453 YLQMNSLSGPIPI-------ALFRSSNLITLDLRDNRFSGVIPHQISESL-----TLRFL 500
           YL  + +             A      +I +D             IS  +          
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 501 LLRGNYL-----EGQIPNQLCQLRRLGVLDLSHNRI 531
            L    L            L     L     +   +
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 45/315 (14%), Positives = 96/315 (30%), Gaps = 78/315 (24%)

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQK----LLYIDMSDNRFEGYLPSSIGEM-----KALI 305
           +  LD+S NNL      ++          +  +++S N         + ++       + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 306 FLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSG 365
            L L  N  S +           L    L+                 +  L L  N FS 
Sbjct: 84  SLNLSGNFLSYK-------SSDELVKT-LAAIP------------FTITVLDLGWNDFSS 123

Query: 366 K----IEEGLSNSNE-LNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQL 420
           K     ++  SN    +  L++  N L                   + ++          
Sbjct: 124 KSSSEFKQAFSNLPASITSLNLRGNDLG------------IKSSDELIQILAAIPA---- 167

Query: 421 LNHGSLNLLSVSENCLS-------GPMTSSFNLSSLEHLYLQMNSL--SGPIPIA---LF 468
               ++N L++  N L+           +S   +S+  L L  N L       +A     
Sbjct: 168 ----NVNSLNLRGNNLASKNCAELAKFLASIP-ASVTSLDLSANLLGLKSYAELAYIFSS 222

Query: 469 RSSNLITLDLRDNRFSGVIPHQISESL----TLRFLLLRGNYLEGQIPNQ-------LCQ 517
             +++++L+L  N   G     +         L+ + L  + ++     Q          
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282

Query: 518 LRRLGVLDLSHNRIS 532
           ++++ ++D +   I 
Sbjct: 283 IQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 46/258 (17%), Positives = 84/258 (32%), Gaps = 57/258 (22%)

Query: 320 APLLTGCISLGLLDLSGNNFY-------GQIFPKYMNLTQLEFLYLENNKFSGK----IE 368
               +    +  LDLS NN Y        Q F        +  L L  N    K    + 
Sbjct: 15  EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFAN--TPASVTSLNLSGNSLGFKNSDELV 72

Query: 369 EGLSNSNE-LNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLN 427
           + L+     +  L++S N LS                  + K               ++ 
Sbjct: 73  QILAAIPANVTSLNLSGNFLS------------YKSSDELVKTLAA--------IPFTIT 112

Query: 428 LLSVSENCLS-------GPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRS-----SNLIT 475
           +L +  N  S           S+   +S+  L L+ N L       L +      +N+ +
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLP-ASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171

Query: 476 LDLRDNRFSGVIPHQISESL-----TLRFLLLRGNYLEGQIPNQLCQL-----RRLGVLD 525
           L+LR N  +     ++++ L     ++  L L  N L  +   +L  +       +  L+
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 526 LSHNRISGSIPSCLTIML 543
           L  N + G     L ++ 
Sbjct: 232 LCLNCLHGPSLENLKLLK 249

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 74/541 (13%), Positives = 153/541 (28%), Gaps = 162/541 (29%)

Query: 7   PKLEQRSNKWLFN--NASNILFFIVVGF-----AN--LTNLKILDLSGCGI--------- 48
            +   +  + L     A N+L   V+G      A     + K+       I         
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 49  TTLQGLTKLKNLEA-LDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCL---- 103
           +    L  L+ L   +D ++ + S  S +  +  + ++   + R +  K +  +CL    
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQAELRRLLKSKPY-ENCLLVLL 251

Query: 104 --KNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVL 161
             +N       ++S       L   +TT                  + + L+  +   + 
Sbjct: 252 NVQNAKAWNAFNLS----CKIL---LTTR---------FKQ-----VTDFLSAATTTHIS 290

Query: 162 LLSSRTNMLSVKTENFLPTFQLKVLG-----LPNYNLKVIPSFLLHQYDLKLLDLSGNNL 216
           L      +   + ++ L    LK L      LP   L   P         + L +   ++
Sbjct: 291 LDHHSMTLTPDEVKSLL----LKYLDCRPQDLPREVLTTNP---------RRLSIIAESI 337

Query: 217 VGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHH-LDVSNNNLTGKLPEDMGI 275
                TW   +N K                      D L   ++ S N L    P +   
Sbjct: 338 RDGLATW---DNWK------------------HVNCDKLTTIIESSLNVLE---PAEY-- 371

Query: 276 ILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKN-------------NFSGELPAPL 322
              + ++  +S                  +F   P +             +        +
Sbjct: 372 ---RKMFDRLS------------------VF---PPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 323 LTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFS--GKIEEGLSNSNELNEL 380
           +       L++              +    LE      N+++    I +  +     +  
Sbjct: 408 VNKLHKYSLVEKQPKEST-----ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 381 DISNNLLSG----HIPHWIGNFSSDLKVLLMSKM-----FLKGNI----PAQLLNHGSLN 427
           D+    L      HI H + N     ++ L   +     FL+  I     A   +   LN
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

Query: 428 LLSVSEN-----CLSGPMTSSFNLSSLEHLYLQM--NSLSGP----IPIALFRSSNLITL 476
            L   +      C + P      ++++     ++  N +       + IAL      I  
Sbjct: 523 TLQQLKFYKPYICDNDPKYERL-VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581

Query: 477 D 477
           +
Sbjct: 582 E 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 112/667 (16%), Positives = 190/667 (28%), Gaps = 229/667 (34%)

Query: 168 NMLSVKTENFLPTFQLK-----------------VLGLPNYNLKVIPSFLLHQYDLKLLD 210
           ++LSV  + F+  F  K                 ++   +    V  +  L       L 
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD---AVSGTLRL----FWTLL 72

Query: 211 LSGNNLVGDFPTWVLRNNTK--LEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGK 268
                +V  F   VLR N K  +  +       +   ++   + D L+     N+N    
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDNQ--- 124

Query: 269 LPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMK-ALIFLRLPKNNFSGELPAPLLT--- 324
                       ++   + +R + YL     +++ AL+ LR          PA  +    
Sbjct: 125 ------------VFAKYNVSRLQPYL-----KLRQALLELR----------PAKNVLIDG 157

Query: 325 --GC-----ISLGLLDLS-GNNFYGQIFPKYMNLTQ-------LEFLYLENNKFSGKIEE 369
             G           L          +IF  ++NL         LE L     K   +I+ 
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEML----QKLLYQID- 210

Query: 370 GLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG--------------- 414
                N  +  D S+N     I   I +  ++L+ LL SK +                  
Sbjct: 211 ----PNWTSRSDHSSN-----IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 415 -NIPAQLL----NHGSLNLLS------VSENCLSGPMTSSFNLSSLEHLYLQMNSLSGP- 462
            N+  ++L         + LS      +S +  S  +T     S L   YL       P 
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPR 320

Query: 463 -----IPIALFRSSNLITLDLRD--NRFSGV-------IPHQISESL-TLRFLLLRGNYL 507
                 P  L    ++I   +RD    +          +   I  SL  L     R  + 
Sbjct: 321 EVLTTNPRRL----SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 508 E-------GQIPNQ-----------------LCQLRRLGVLDLSHNRISGSIPSCLTIML 543
                     IP                   + +L +  +++      + SIPS    + 
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 544 LWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRY 603
           + +     LH             SI  +YN                P+    + +     
Sbjct: 437 VKLENEYALHR------------SIVDHYN---------------IPKTFDSDDLIPPYL 469

Query: 604 ELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSI---------PGS 654
           + Y  S+I +          L      E   L  R + L + FL   I          GS
Sbjct: 470 DQYFYSHIGH---------HLKNIEHPERMTL-FRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 655 FSNL--------KWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFA 706
             N          +I   D  + RL   +      L+FL    +  N +     D  + A
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAI------LDFL--PKIEENLICSKYTDLLRIA 571

Query: 707 TFDESSY 713
              E   
Sbjct: 572 LMAEDEA 578

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 48  ITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLS 107
           + +L  L   +NL  L +         E + +  L  L    +    ++   PD      
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 108 HLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNF 143
            L  L++S+N L  +L        SL+ L L  N  
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 18/107 (16%)

Query: 192 NLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN--------SFTG 243
                   L    +L  L +     +       LR   +L  L +  +        +F  
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 244 NLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRF 290
               P+     L  L++S N L   L       L  L  + +S N  
Sbjct: 79  ---TPR-----LSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 6e-05
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 445 NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLTLRFLLLR 503
            L  L +L +  + L   +    F     L  L+L  N     +  +  + L+L+ L+L 
Sbjct: 54  GLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLS 111

Query: 504 GNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLW 545
           GN L     +  C LR L   +                    
Sbjct: 112 GNPL-----HCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPL 148

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 32  FANLTNLKILDLSGCGITTLQGLT--KLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
              L  L+ L +   G+  +          L  L+LS+N +   S S    +  +L E +
Sbjct: 52  LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL--ESLSWKTVQGLSLQELV 109

Query: 90  LRG 92
           L G
Sbjct: 110 LSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 617 LDLSCNQLTGGIPSE-IGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQ 674
           L +   Q    +    +  L ++R L +  + L    P +F     +  L+LS N L   
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94

Query: 675 VPPRLTELNFLSNFNVSFNNL 695
           +  +  +   L    +S N L
Sbjct: 95  LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 28/113 (24%)

Query: 349 NLTQLEFLYLENNKFSGKIEEG-LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLM 407
               L  LY+EN +    +E   L    EL  L I  + L                    
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR------------------- 69

Query: 408 SKMFLKGNIPAQLLNH-GSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSL 459
                   +     +    L+ L++S N L      +    SL+ L L  N L
Sbjct: 70  -------FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 32  FANLTNLKILDLSGCGIT--TLQGLTKLKNLEALDLSY-NNISGSSESQGVCELKNLSEF 88
            +  + L+ L L G  ++   +  L K  NL  L+LS  +  S  +    +     L E 
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173

Query: 89  ILRG------INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNN 142
            L         +++  +    + ++ L +     N     L + +    +L +L L D+ 
Sbjct: 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233

Query: 143 FEGTFLLNSLANHSKLEVLLLSS 165
                        + L+ L LS 
Sbjct: 234 MLKNDCFQEFFQLNYLQHLSLSR 256

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 10/144 (6%)

Query: 32  FANLTNLKILDLSGCGITTLQGLTKL----KNLEALDLSY-NNISGSSESQGVCEL-KNL 85
            A  +NL  L+LSGC   +   L  L      L+ L+LS+  + +       V  + + +
Sbjct: 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197

Query: 86  SEFILRGINIK---GHLPDCLKNLSHLKVLDISY-NQLSGTLPSAITTLTSLEYLALLDN 141
           ++  L G         L   ++   +L  LD+S    L          L  L++L+L   
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257

Query: 142 NFEGTFLLNSLANHSKLEVLLLSS 165
                  L  L     L+ L +  
Sbjct: 258 YDIIPETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 40/247 (16%), Positives = 81/247 (32%), Gaps = 47/247 (19%)

Query: 33  ANLTNLKILDLSGCGITTLQGLT---KLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
             L +  ++          Q L        ++ +DLS + I  S+    + +   L    
Sbjct: 65  GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124

Query: 90  LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
           L G+ +   + + L   S+L  L++S         S  +   +L+ L             
Sbjct: 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGC-------SGFSE-FALQTLL------------ 164

Query: 150 NSLANHSKLEVLLLSSRTNM----LSVKTENFLPTFQLKVLGLPNYNLKV----IPSFLL 201
              ++ S+L+ L LS   +     + V   +      +  L L  Y   +    + + + 
Sbjct: 165 ---SSCSRLDELNLSWCFDFTEKHVQVAVAHVSE--TITQLNLSGYRKNLQKSDLSTLVR 219

Query: 202 HQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFL------TNNSFTGNLQLPKTKHDFL 255
              +L  LDLS + ++ +           L+ L L         +     ++P      L
Sbjct: 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT-----L 274

Query: 256 HHLDVSN 262
             L V  
Sbjct: 275 KTLQVFG 281

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 39/256 (15%), Positives = 74/256 (28%), Gaps = 51/256 (19%)

Query: 34  NLTNLKILDLSGCGITT--LQGLTK-LKNLEALDLSYNNISGSSESQGVCEL-----KNL 85
               L  ++L+ C +    L+ L         L L  N++   +  + + +L       +
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA-CKDLRDLLLHDQCQI 157

Query: 86  SEFILRGINIKG----HLPDCLKNLSHLKVLDISYNQLSGT----LPSAITTLTSLEYLA 137
           +   L    +       L + L   + +  L + +  L       L + +     L+ L 
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217

Query: 138 LLDNNFE---GTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFL--------PTFQLKVL 186
           +  N         L  +   H  LE+L L    N LS +    L           ++ V 
Sbjct: 218 VAYNGAGDTAALALARAAREHPSLELLHLYF--NELSSEGRQVLRDLGGAAEGGARVVVS 275

Query: 187 GLPN----------------YNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTW----VLR 226
                                      + +    +L L DL  +        W    +LR
Sbjct: 276 LTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSR-GATLNPWRKAQLLR 334

Query: 227 NNTKLEALFLTNNSFT 242
              ++ AL     S  
Sbjct: 335 VEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 52/323 (16%), Positives = 97/323 (30%), Gaps = 72/323 (22%)

Query: 206 LKLLDLSGNNLVGDFPTWVL-----RNNTKLEALFLTNNSFT--GNLQLPKTKHDFLHHL 258
           L+ L+L+G  +       V+          L+ + L +      G   L          L
Sbjct: 74  LRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR-ARKL 131

Query: 259 DVSNNNLTGKLPEDMGIILQ----KLLYIDMSDNRF--EG--YLPSSIGEMKALIFLRLP 310
            +  N+L  +  +D+  +L     ++  + +S+N     G   L   +    ++  L L 
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 311 KNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGK---- 366
                 E       G   L    L  N              QL+ L +  N         
Sbjct: 192 HTGLGDE-------GLELLAAQ-LDRN-------------RQLQELNVAYNGAGDTAALA 230

Query: 367 IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSL 426
           +         L  L +  N LS                 ++  +             G+ 
Sbjct: 231 LARAAREHPSLELLHLYFNELS------------SEGRQVLRDLG-------GAAEGGAR 271

Query: 427 NLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGV 486
            ++S++E        S        +L    NS        + R   L+  DL D+R + +
Sbjct: 272 VVVSLTEGTAVSEYWSVILSEVQRNL----NSWD---RARVQRHLELLLRDLEDSRGATL 324

Query: 487 IPHQISESL----TLRFLLLRGN 505
            P + ++ L     +R LL +  
Sbjct: 325 NPWRKAQLLRVEGEVRALLEQLG 347

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 9e-06
 Identities = 56/268 (20%), Positives = 95/268 (35%), Gaps = 20/268 (7%)

Query: 13  SNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGIT--TLQGLTK-LKNLEALDLSY-N 68
            N         +  +I    ++ T L+ + L    +T   L+ + K  KN + L LS   
Sbjct: 82  FNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141

Query: 69  NISGSSESQGVCELKNLSEFILRGINIKG----HLPDCLKNLSHLKVLDIS--YNQLSGT 122
             S    +      +NL E  LR  ++       L       + L  L+IS   +++S +
Sbjct: 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS 201

Query: 123 -LPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTF 181
            L   +T   +L+ L  L+       L   L    +LE L     T  +     + L   
Sbjct: 202 ALERLVTRCPNLKSLK-LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260

Query: 182 -----QLKVL-GLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALF 235
                +L+ L G  +     +P+       L  L+LS   +       +L    KL+ L+
Sbjct: 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320

Query: 236 LTNN-SFTGNLQLPKTKHDFLHHLDVSN 262
           + +     G   L  T  D L  L V  
Sbjct: 321 VLDYIEDAGLEVLASTCKD-LRELRVFP 347

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 84/542 (15%), Positives = 164/542 (30%), Gaps = 69/542 (12%)

Query: 8   KLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSY 67
           ++E+   + +F      +    V       ++ ++L G        L        +   +
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATV-IRRFPKVRSVELKGKPHFADFNL--------VPDGW 89

Query: 68  NNISGSSESQGVCELKNLSEFILRGINI-KGHLPDCLKNLSHLKVLDISY-NQLSGT-LP 124
                            L E  L+ + +    L    K+  + KVL +S     S   L 
Sbjct: 90  GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149

Query: 125 SAITTLTSLEYLALLDNNFE---GTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTF 181
           +   T  +L+ L L +++ +   G +L +    ++ L  L +S   + +S      L T 
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209

Query: 182 --QLKVLGLPN-YNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTW-----VLRNNTKLEA 233
              LK L L     L+ + + L     L+ L   G         +      L    +L  
Sbjct: 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269

Query: 234 LFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGY 293
           L    ++    L    +    L  L++S   +       +     KL  + + D   +  
Sbjct: 270 LSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAG 329

Query: 294 LPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQL 353
           L       K L  LR+  +      P   LT     GL+ +S            M   +L
Sbjct: 330 LEVLASTCKDLRELRVFPSEPFVMEPNVALTE---QGLVSVS------------MGCPKL 374

Query: 354 EFLYLENNKFSGK-IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFL 412
           E +     + +   +     N   +    +   ++    P ++     D+    + +   
Sbjct: 375 ESVLYFCRQMTNAALITIARNRPNMTRFRLC--IIEPKAPDYLTLEPLDIGFGAIVE--- 429

Query: 413 KGNIPAQLLNHGSLNLLSVSENCLS--GPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRS 470
                    +   L  LS+S   L+             +E L +     S      +   
Sbjct: 430 ---------HCKDLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG 479

Query: 471 -SNLITLDLRDNRFSG-VIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSH 528
             +L  L++RD  F    +    S+  T+R L +             C +       L  
Sbjct: 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS-----------CSVSFGACKLLGQ 528

Query: 529 NR 530
             
Sbjct: 529 KM 530

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 19/178 (10%)

Query: 374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSE 433
                ++D     +S      +      + +L   K+    N+        +L  L +  
Sbjct: 143 GLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIIS 202

Query: 434 NCLSGPMTSSF---NLSSLEHL--YLQMNSLSGPIPIALF-------RSSNLITLDLRDN 481
             L   +       +L +LE L  Y+ +        + +F       R  NL  L + D 
Sbjct: 203 GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262

Query: 482 RFSGVIPHQISESL---TLRFLLLRGNYL--EG--QIPNQLCQLRRLGVLDLSHNRIS 532
               V+     ES     L  + +    L  EG   + + + +++ L  +++ +N +S
Sbjct: 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 26/99 (26%)

Query: 34  NLTNLKILDLSGCGITT-----LQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
              NLK L +                  L  LE +D+S   ++      G   L      
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE----GARLL------ 299

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAI 127
                       D +  + HLK +++ YN LS  +   +
Sbjct: 300 -----------LDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)

Query: 3   TSVGPKLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEA 62
           T    + E  S   +  N S+I    V G   L N++ L L G  +  +  L +L NL  
Sbjct: 32  TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDISALKELTNLTY 89

Query: 63  LDLSYNNISGSSESQGVCE-LKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG 121
           L L+ N +   S   GV + L NL E +L    ++         L++L  L++++NQL  
Sbjct: 90  LILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ- 146

Query: 122 TLPSAI-TTLTSLEYLALLDN 141
           +LP  +   LT+L  L L  N
Sbjct: 147 SLPKGVFDKLTNLTELDLSYN 167

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 8/129 (6%)

Query: 16  WLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL-QGL-TKLKNLEALDLSYNNISGS 73
           +L +N    L   V  F +L NLK L L    +  L  G+   L  L  LDL  N ++  
Sbjct: 46  YLHDNQITKLEPGV--FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-- 101

Query: 74  SESQGVCE-LKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTS 132
                V + L +L E  +    +   LP  ++ L+HL  L +  NQL      A   L+S
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 133 LEYLALLDN 141
           L +  L  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 23/140 (16%)

Query: 110 KVLDISYNQLSGTLPSAITTLTSLEYLALLDNNF----EGTFLLNSLANHSKLEVLLLSS 165
           ++L +  NQ++   P    +L +L+ L L  N       G F  +SL     L VL L +
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--DSLTQ---LTVLDLGT 97

Query: 166 RTNMLSVKTENFLPT--F----QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGD 219
             N L+V     LP+  F     LK L +    L  +P  +     L  L L  N L   
Sbjct: 98  --NQLTV-----LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-KS 149

Query: 220 FPTWVLRNNTKLEALFLTNN 239
            P       + L   +L  N
Sbjct: 150 IPHGAFDRLSSLTHAYLFGN 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 36  TNLKILDLSGCGITTLQG---LTKLKNLEALDLSYNNISGSSESQGVCE-LKNLSEFILR 91
            +   L L+   +  +       +L +L  L+L  N ++         E   ++ E  L 
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT--GIEPNAFEGASHIQELQLG 86

Query: 92  GINIKGHLPD-CLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDN 141
              IK  + +     L  LK L++  NQ+S  +P +   L SL  L L  N
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 32  FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGV-CELKNLSEF 88
           F  LT L  L+L    + TL       L  L  L L+ N ++  S   GV   L  L + 
Sbjct: 55  FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA--SLPLGVFDHLTQLDKL 112

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNN 142
            L G  +K         L+ LK L ++ NQL      A   LT+L+ L+L  N 
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 32  FANLTNLKILDLSGCGITTL-QGL-TKLKNLEALDLSYNNISGSSESQGVCE-LKNLSEF 88
           F +LT L  L L+   + +L  G+   L  L+ L L  N +   S   GV + L  L E 
Sbjct: 79  FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK--SLPSGVFDRLTKLKEL 136

Query: 89  ILRGINIKGHLPD-CLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNF 143
            L    ++  +P      L++L+ L +S NQL      A   L  L+ + L  N F
Sbjct: 137 RLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 21/145 (14%)

Query: 258 LDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSI-GEMKALIFLRLPKNNFSG 316
           LD+ +  L   L +     L KL ++++  N+ +  L + +  ++  L  L L  N  + 
Sbjct: 40  LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA- 96

Query: 317 ELPAPLLTGCISLGLLDLSGNNFYGQI-------FPKYMNLTQLEFLYLENNKFSGKIEE 369
            LP  +      L  L L GN    Q+       F +   LT+L+ L L  N+    I  
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGN----QLKSLPSGVFDR---LTKLKELRLNTNQLQ-SIPA 148

Query: 370 GLSNS-NELNELDISNNLLSGHIPH 393
           G  +    L  L +S N L   +PH
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQS-VPH 172

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 617 LDLSCNQLTGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV 675
           L L  NQ T  +P E+ +   +  ++LS N +S     SFSN+  + +L LS+NRL   +
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 676 PP----RLTELNFLS 686
           PP     L  L  LS
Sbjct: 94  PPRTFDGLKSLRLLS 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	790
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.39
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.39
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.5
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.72
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.49
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.3
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.21
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.02
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.83

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.1e-81  Score=740.87  Aligned_cols=672  Identities=33%  Similarity=0.449  Sum_probs=567.1

Q ss_pred             CCCCEEEcCCCCCC-----ccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCc--ccCCCCC
Q 036932           36 TNLKILDLSGCGIT-----TLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPD--CLKNLSH  108 (790)
Q Consensus        36 ~~L~~L~Ls~n~i~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~  108 (790)
                      .+++.|+|+++.+.     .++++.++++|+.++++.+.+...  ...+..+++|++|+|++|.+.+.+|.  .++++++
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  127 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS--VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG  127 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEEC--CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCC--chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence            57888888888776     234688888888888888876532  23688888899999999888888887  8888899


Q ss_pred             CcEEEccCCCCCCCChhhh-cCCCCCCEEeCcCCcCccccchhh--hhCCCCCcEEEccCCCCCcccccCCCCCCccceE
Q 036932          109 LKVLDISYNQLSGTLPSAI-TTLTSLEYLALLDNNFEGTFLLNS--LANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKV  185 (790)
Q Consensus       109 L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~  185 (790)
                      |++|||++|.+.+..|..+ .++++|++|++++|.+++..+...  +.++++|++|++++|......+   +..+++|++
T Consensus       128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~  204 (768)
T 3rgz_A          128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEF  204 (768)
T ss_dssp             CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCE
T ss_pred             CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCE
Confidence            9999999988887777665 788889999999998887655332  6788889999998887654332   367788999


Q ss_pred             EeCCCCCCCC-cchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCC
Q 036932          186 LGLPNYNLKV-IPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNN  264 (790)
Q Consensus       186 L~l~~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  264 (790)
                      |++++|.+.. +|. +..+++|++|++++|.+++.+|..+ .++++|++|++++|.+++..  +...+++|++|++++|.
T Consensus       205 L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~L~~n~  280 (768)
T 3rgz_A          205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENK  280 (768)
T ss_dssp             EECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESC--CCCCCTTCCEEECCSSE
T ss_pred             EECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCcc--CccccCCCCEEECcCCc
Confidence            9999999954 555 8899999999999999998888765 58999999999999998764  33488999999999999


Q ss_pred             CCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCccccc
Q 036932          265 LTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIF  344 (790)
Q Consensus       265 l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~  344 (790)
                      ++|.+|..++..+++|++|++++|.+++.+|..++.+++|++|++++|.+.|.+|...+..+++|++|++++|.+.+.+|
T Consensus       281 l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p  360 (768)
T 3rgz_A          281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP  360 (768)
T ss_dssp             EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred             cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence            99999998876669999999999999999999999999999999999999999999878899999999999999999999


Q ss_pred             ccccCCC-CCcEEEcCCcccccccccccCC--CCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhc
Q 036932          345 PKYMNLT-QLEFLYLENNKFSGKIEEGLSN--SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL  421 (790)
Q Consensus       345 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  421 (790)
                      ..+..++ +|++|++++|.+++.+|..+..  +++|++|++++|++++.+|..+..++. |+.|++++|.+++.+|..+.
T Consensus       361 ~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~  439 (768)
T 3rgz_A          361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLG  439 (768)
T ss_dssp             TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT-CCEEECCSSEEESCCCGGGG
T ss_pred             HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC-CCEEECcCCcccCcccHHHh
Confidence            9998887 9999999999999988888877  889999999999999999999999998 99999999999999999999


Q ss_pred             cCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEE
Q 036932          422 NHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFL  500 (790)
Q Consensus       422 ~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  500 (790)
                      .+++|++|++++|.+++.+|..+ .+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.+++.+++|++|
T Consensus       440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  519 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL  519 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence            99999999999999999999888 89999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccc-------------cccccc
Q 036932          501 LLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFS-------------AIFVGS  567 (790)
Q Consensus       501 ~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~  567 (790)
                      ++++|+++|.+|..++.+++|+.||+++|+++|.+|.++......................             ..+.+.
T Consensus       520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (768)
T 3rgz_A          520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI  599 (768)
T ss_dssp             ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred             ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999887654322111110000000000             000010


Q ss_pred             ccccccc--cccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccC
Q 036932          568 IGTYYNS--TFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSY  644 (790)
Q Consensus       568 l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~  644 (790)
                      .+.....  .........+.+.+...              .....++.|+.|||++|+++|.||.+++.+. |+.|||++
T Consensus       600 ~~~~~~~l~~~~~~~l~~~~~~g~~~--------------~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~  665 (768)
T 3rgz_A          600 RSEQLNRLSTRNPCNITSRVYGGHTS--------------PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH  665 (768)
T ss_dssp             CGGGGGGGGGTCCSCTTSCEEEEECC--------------CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred             cchhhhccccccccccccceecccCc--------------hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence            0000000  00000001111111000              0113478899999999999999999999998 99999999


Q ss_pred             CccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCcCCCCCCC
Q 036932          645 NFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTI  724 (790)
Q Consensus       645 N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~  724 (790)
                      |+++|.||..|+++++|++||||+|+++|.||.+++.+++|++||+|+|+|+|.||+++||.+|...+|.||+++||+|+
T Consensus       666 N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l  745 (768)
T 3rgz_A          666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL  745 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS
T ss_pred             CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCC
Q 036932          725 NKSCNSTE  732 (790)
Q Consensus       725 ~~~c~~~~  732 (790)
                      . .|....
T Consensus       746 ~-~C~~~~  752 (768)
T 3rgz_A          746 P-RCDPSN  752 (768)
T ss_dssp             C-CCCSCC
T ss_pred             c-CCCCCc
Confidence            7 897554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.3e-73  Score=672.22  Aligned_cols=640  Identities=27%  Similarity=0.362  Sum_probs=542.6

Q ss_pred             CCCCCEEeCCCCCCCCC---cCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChh--hhcCCC
Q 036932           57 LKNLEALDLSYNNISGS---SESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPS--AITTLT  131 (790)
Q Consensus        57 l~~L~~L~Ls~n~i~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~  131 (790)
                      -.+++.|+|+++.+.+.   ++ ..+.++++|+.++++.+.+. .+|..|+++++|++|||++|.+++.+|.  .+++++
T Consensus        49 ~~~v~~L~L~~~~l~g~~~~l~-~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~  126 (768)
T 3rgz_A           49 DDKVTSIDLSSKPLNVGFSAVS-SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS  126 (768)
T ss_dssp             TTEEEEEECTTSCCCEEHHHHH-HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCT
T ss_pred             CCcEEEEECCCCCcCCccCccC-hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCC
Confidence            36799999999999875   43 46889999999999998876 3668899999999999999999998888  999999


Q ss_pred             CCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccC--CCCCCccceEEeCCCCCCC-CcchhhhCCCCCCE
Q 036932          132 SLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTE--NFLPTFQLKVLGLPNYNLK-VIPSFLLHQYDLKL  208 (790)
Q Consensus       132 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~--~~~~~~~L~~L~l~~n~l~-~lp~~l~~l~~L~~  208 (790)
                      +|++|++++|.+++.++...+.++++|++|++++|......+..  .+..+++|++|++++|.+. ..|.  ..+++|++
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~  204 (768)
T 3rgz_A          127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEF  204 (768)
T ss_dssp             TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCE
T ss_pred             CCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCE
Confidence            99999999999998887665689999999999999865444332  1678899999999999994 4433  78899999


Q ss_pred             EEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCC
Q 036932          209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDN  288 (790)
Q Consensus       209 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n  288 (790)
                      |++++|.+++.+|.  +.++++|++|++++|.+++..+..+..+++|++|++++|.+.+.+|..   .+++|++|++++|
T Consensus       205 L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n  279 (768)
T 3rgz_A          205 LDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAEN  279 (768)
T ss_dssp             EECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSS
T ss_pred             EECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCC
Confidence            99999999988887  568999999999999999877777889999999999999999888875   5899999999999


Q ss_pred             ccccccchhhhcc-cccccccCcccccccccChhhhhcCCcCcEEEccCCcCccccccc-ccCCCCCcEEEcCCcccccc
Q 036932          289 RFEGYLPSSIGEM-KALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPK-YMNLTQLEFLYLENNKFSGK  366 (790)
Q Consensus       289 ~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~  366 (790)
                      .+++.+|..+... ++|++|++++|++.+.+|.. +..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.
T Consensus       280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~  358 (768)
T 3rgz_A          280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE  358 (768)
T ss_dssp             EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred             ccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence            9999999998875 99999999999999888876 478999999999999999888866 89999999999999999999


Q ss_pred             cccccCCCC-CCcEEEcccccCcCCCchhhhh--ccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCccccc
Q 036932          367 IEEGLSNSN-ELNELDISNNLLSGHIPHWIGN--FSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSS  443 (790)
Q Consensus       367 ~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  443 (790)
                      +|..+..++ +|++|++++|++++.+|..++.  ++. |+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..
T Consensus       359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  437 (768)
T 3rgz_A          359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS  437 (768)
T ss_dssp             CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC-CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC-ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH
Confidence            999998887 9999999999999999988877  666 999999999999999999999999999999999999999988


Q ss_pred             c-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCC
Q 036932          444 F-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLG  522 (790)
Q Consensus       444 ~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~  522 (790)
                      + .+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.++..+++|++|++++|++++.+|.++..+++|+
T Consensus       438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  517 (768)
T 3rgz_A          438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA  517 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence            8 899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccccccccccccccccc---CCCcc--------cccCc
Q 036932          523 VLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHY---GNGVY--------SIFPQ  591 (790)
Q Consensus       523 ~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~--------~~~~~  591 (790)
                      +|++++|+++|.+|..++.+...         ..++...+.+.+.++............   ....+        .....
T Consensus       518 ~L~L~~N~l~~~~p~~l~~l~~L---------~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (768)
T 3rgz_A          518 ILKLSNNSFSGNIPAELGDCRSL---------IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH  588 (768)
T ss_dssp             EEECCSSCCEEECCGGGGGCTTC---------CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred             EEECCCCcccCcCCHHHcCCCCC---------CEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence            99999999999999988765432         133444455555555332211111000   00000        00000


Q ss_pred             ceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCc
Q 036932          592 LVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNR  670 (790)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~  670 (790)
                      .........+.. ......++.+..++++.|.++|.+|..++.+. |+.||||+|+++|.+|.+|+++++|+.||||+|+
T Consensus       589 ~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~  667 (768)
T 3rgz_A          589 GAGNLLEFQGIR-SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND  667 (768)
T ss_dssp             SSEEEEECTTCC-GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccc-chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence            000000000000 00112355677789999999999999999998 9999999999999999999999999999999999


Q ss_pred             ccccCCccccCCCCCCeEecccCcceecCCCC-CcCCCcCcccccCCc
Q 036932          671 LSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK-GQFATFDESSYRGNL  717 (790)
Q Consensus       671 lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~  717 (790)
                      ++|.||.+++.++.|++||||+|+++|.||.. +.+..+....+.+|+
T Consensus       668 l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            99999999999999999999999999999976 455555555566664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.3e-59  Score=549.91  Aligned_cols=590  Identities=21%  Similarity=0.219  Sum_probs=416.9

Q ss_pred             eeeccCceeeeChhhhcCCCCCCEEEcCCCCCCccc--cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCc
Q 036932           17 LFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN   94 (790)
Q Consensus        17 l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   94 (790)
                      ++..+.+++.++. .+.  +++++|++++|.++.++  .|.++++|++|++++|.+++..+ ..+.++++|++|++++|.
T Consensus         9 ~~cs~~~L~~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            9 ADCSHLKLTQVPD-DLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EECCSSCCSSCCS-CSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSC
T ss_pred             eECCCCCcccccc-ccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCc
Confidence            3444445554443 121  45555555555555221  35555555555555555554332 345555555555555555


Q ss_pred             CcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCccccc
Q 036932           95 IKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKT  174 (790)
Q Consensus        95 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~  174 (790)
                      +.+..+.+|+++++|++|++++|++++..|..|+++++|++|++++|.+++..+ ..+                      
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~----------------------  141 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQ----------------------  141 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSS----------------------
T ss_pred             cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc-hhh----------------------
Confidence            554444445555555555555555554444555555555555555555543322 233                      


Q ss_pred             CCCCCCccceEEeCCCCCCCCcchh-h--hCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCC--
Q 036932          175 ENFLPTFQLKVLGLPNYNLKVIPSF-L--LHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPK--  249 (790)
Q Consensus       175 ~~~~~~~~L~~L~l~~n~l~~lp~~-l--~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~--  249 (790)
                         ..+++|++|++++|.++.++.. +  ..+++|+.|++++|.+++..|.. +..+++|+.+++.++.+........  
T Consensus       142 ---~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~  217 (680)
T 1ziw_A          142 ---VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCL  217 (680)
T ss_dssp             ---SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHH
T ss_pred             ---cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh-hhhhhhhhhhhccccccChhhHHHHHH
Confidence               4444555555555555444332 2  23456777777777666444433 3466667777776665543211000  


Q ss_pred             -CCCCCCCEEEeecCCCCccCChhHHhhcc--cccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcC
Q 036932          250 -TKHDFLHHLDVSNNNLTGKLPEDMGIILQ--KLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGC  326 (790)
Q Consensus       250 -~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l  326 (790)
                       ...++|+.|++++|.+.+..|..+. .++  +|++|++++|.+++..|..++.+++|++|++++|++.+. +...+.++
T Consensus       218 ~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l  295 (680)
T 1ziw_A          218 ELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGL  295 (680)
T ss_dssp             HHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTC
T ss_pred             HhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCC
Confidence             0235677888888877755555543 344  388888888888877777888888888888888888744 34445678


Q ss_pred             CcCcEEEccCCcCccc-----cc----ccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCC--chhh
Q 036932          327 ISLGLLDLSGNNFYGQ-----IF----PKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI--PHWI  395 (790)
Q Consensus       327 ~~L~~L~L~~n~l~~~-----~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--p~~~  395 (790)
                      ++|++|++++|...+.     +|    ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..  +..+
T Consensus       296 ~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f  375 (680)
T 1ziw_A          296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF  375 (680)
T ss_dssp             TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTT
T ss_pred             CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhh
Confidence            8888888887654431     22    26778899999999999999888888999999999999999865322  2233


Q ss_pred             hhcc-CCCeEEEccCccccccchhhhccCCCCCEEecCCccccCccc-ccc-cccccceeeccCCcCccccchhhcCCCC
Q 036932          396 GNFS-SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMT-SSF-NLSSLEHLYLQMNSLSGPIPIALFRSSN  472 (790)
Q Consensus       396 ~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~  472 (790)
                      ..+. ..|+.|++++|.+++..|..+..+++|+.|++++|.+++.++ ..+ .+++|++|++++|++++..+..+..+++
T Consensus       376 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  455 (680)
T 1ziw_A          376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS  455 (680)
T ss_dssp             GGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTT
T ss_pred             cccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcc
Confidence            3322 239999999999999999999999999999999999988665 455 8999999999999999888899999999


Q ss_pred             CcEEeccCCccc--ccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccc
Q 036932          473 LITLDLRDNRFS--GVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNV  550 (790)
Q Consensus       473 L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~  550 (790)
                      |+.|++++|.+.  +.+|.++..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+...        
T Consensus       456 L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--------  527 (680)
T 1ziw_A          456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG--------  527 (680)
T ss_dssp             CCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS--------
T ss_pred             cccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC--------
Confidence            999999999987  5788999999999999999999998888889999999999999999984322111000        


Q ss_pred             cCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCCh
Q 036932          551 YLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPS  630 (790)
Q Consensus       551 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~  630 (790)
                                                             +.              ..-..++.|+.|+|++|+++ .+|.
T Consensus       528 ---------------------------------------~~--------------~~~~~l~~L~~L~L~~N~l~-~i~~  553 (680)
T 1ziw_A          528 ---------------------------------------PI--------------YFLKGLSHLHILNLESNGFD-EIPV  553 (680)
T ss_dssp             ---------------------------------------CC--------------CTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             ---------------------------------------cc--------------hhhcCCCCCCEEECCCCCCC-CCCH
Confidence                                                   00              00034678999999999999 5665


Q ss_pred             -hhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCcccc-CCCCCCeEecccCcceecCCC
Q 036932          631 -EIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLT-ELNFLSNFNVSFNNLSGLIPD  701 (790)
Q Consensus       631 -~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~-~l~~L~~L~ls~N~l~g~iP~  701 (790)
                       .++.+. |+.|+|++|++++..|..|+++++|+.|||++|+|++.+|..+. .+++|+.+++++|++.|.++.
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence             578887 99999999999988888899999999999999999999998888 789999999999999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.9e-58  Score=542.23  Aligned_cols=585  Identities=21%  Similarity=0.214  Sum_probs=468.9

Q ss_pred             CEEEcCCCCCCccc-cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCC
Q 036932           39 KILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYN  117 (790)
Q Consensus        39 ~~L~Ls~n~i~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  117 (790)
                      +.+|+++++++.++ .+.  +++++|++++|.+++.++ ..+.++++|++|++++|.+.+..|.+|+++++|++|++++|
T Consensus         7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            56777777777433 343  677777777777775443 45677777777777777777777777777777777777777


Q ss_pred             CCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCC-Cc
Q 036932          118 QLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK-VI  196 (790)
Q Consensus       118 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l  196 (790)
                      ++++..+..|+++++|++|++++|.+++ +++..+.++++|++|+++                         +|.+. ..
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls-------------------------~n~l~~~~  137 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLS-------------------------HNGLSSTK  137 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECC-------------------------SSCCSCCC
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECC-------------------------CCcccccC
Confidence            7775555567777777777777777753 333445555555555554                         55553 34


Q ss_pred             chhhhCCCCCCEEEccCCCCCCcCchhHh-hCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHh
Q 036932          197 PSFLLHQYDLKLLDLSGNNLVGDFPTWVL-RNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGI  275 (790)
Q Consensus       197 p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  275 (790)
                      |..+..+++|++|++++|.+++..+..+. ..+++|++|++++|.+++..+..+..+++|+.++++++.+.+.....+..
T Consensus       138 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~  217 (680)
T 1ziw_A          138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL  217 (680)
T ss_dssp             CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHH
T ss_pred             chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHH
Confidence            55678899999999999999865555432 25689999999999999887666778899999999999886433332221


Q ss_pred             --hcccccEecccCCccccccchhhhcccc--cccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCC
Q 036932          276 --ILQKLLYIDMSDNRFEGYLPSSIGEMKA--LIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLT  351 (790)
Q Consensus       276 --~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  351 (790)
                        ..++|++|++++|.+++..|.++..++.  |++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..++
T Consensus       218 ~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  296 (680)
T 1ziw_A          218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF  296 (680)
T ss_dssp             HHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT
T ss_pred             HhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCccChhhhcCCC
Confidence              2378999999999999999999998866  999999999998 55555568999999999999999999999999999


Q ss_pred             CCcEEEcCCccccc-----ccc----cccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccc--hhhh
Q 036932          352 QLEFLYLENNKFSG-----KIE----EGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNI--PAQL  420 (790)
Q Consensus       352 ~L~~L~L~~n~l~~-----~~~----~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~--~~~~  420 (790)
                      +|++|++++|...+     .+|    ..+..+++|++|++++|.+.+..|..+..++. |++|++++|.+....  ...+
T Consensus       297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~l~~~~f  375 (680)
T 1ziw_A          297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETF  375 (680)
T ss_dssp             TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTT-CCEEECTTCBSCCCEECTTTT
T ss_pred             CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccC-CcEEECCCCchhhhhcchhhh
Confidence            99999999876543     223    26788999999999999999988889999988 999999999865332  2233


Q ss_pred             cc--CCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccc-hhhcCCCCCcEEeccCCcccccCchhhhcCcc
Q 036932          421 LN--HGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIP-IALFRSSNLITLDLRDNRFSGVIPHQISESLT  496 (790)
Q Consensus       421 ~~--~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p-~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~  496 (790)
                      ..  .++|+.|++++|.+++..+..+ .+++|++|++++|.+++.+| ..+..+++|++|++++|++.+..+..+..+++
T Consensus       376 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  455 (680)
T 1ziw_A          376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS  455 (680)
T ss_dssp             GGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTT
T ss_pred             cccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcc
Confidence            33  3689999999999999988888 89999999999999998776 68899999999999999999999999999999


Q ss_pred             ccEEeccCcccc--ccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccc
Q 036932          497 LRFLLLRGNYLE--GQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNS  574 (790)
Q Consensus       497 L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  574 (790)
                      |+.|++++|.+.  +.+|..+..+++|+.|++++|++++..|..+.                                  
T Consensus       456 L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~----------------------------------  501 (680)
T 1ziw_A          456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE----------------------------------  501 (680)
T ss_dssp             CCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT----------------------------------
T ss_pred             cccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc----------------------------------
Confidence            999999999987  57899999999999999999999954443332                                  


Q ss_pred             cccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCC--------hhhhhce-ecceeccCC
Q 036932          575 TFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIP--------SEIGDLQ-IRGLNLSYN  645 (790)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip--------~~~~~l~-L~~L~Ls~N  645 (790)
                                                         .++.|+.|++++|++++..+        ..++.+. |+.|+|++|
T Consensus       502 -----------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N  546 (680)
T 1ziw_A          502 -----------------------------------GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN  546 (680)
T ss_dssp             -----------------------------------TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred             -----------------------------------cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence                                               25789999999999986422        2356666 999999999


Q ss_pred             ccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCC-C-cCCCcCcccccCCcCCCCCC
Q 036932          646 FLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK-G-QFATFDESSYRGNLHLCGPT  723 (790)
Q Consensus       646 ~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~-~~~~~~~~~~~gn~~lcg~~  723 (790)
                      +++...+..|+++++|+.|||++|+|++..|..|..+++|+.|++++|++++..|.. + .+..+....+.|||+.|.++
T Consensus       547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            999555567999999999999999999888888999999999999999999977653 2 45667777789999999765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-56  Score=536.20  Aligned_cols=568  Identities=21%  Similarity=0.215  Sum_probs=401.8

Q ss_pred             EEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccC-CcccCCCCCCcEEEccCCC
Q 036932           40 ILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHL-PDCLKNLSHLKVLDISYNQ  118 (790)
Q Consensus        40 ~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~  118 (790)
                      ..|.++++++.++.  -.++|++|||++|.|++..+ ..+.++++|++|+|++|...+.+ |.+|+++++|++|+|++|+
T Consensus         8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred             EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence            44445555553333  33455555555555543322 34555555555555555333333 4555566666666666666


Q ss_pred             CCCCChhhhcCCCCCCEEeCcCCcCccccchh-hhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCc-
Q 036932          119 LSGTLPSAITTLTSLEYLALLDNNFEGTFLLN-SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVI-  196 (790)
Q Consensus       119 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l-  196 (790)
                      +.+..|..|+++++|++|+|++|.+++.++.. .+.++++|++|++++|                         .+..+ 
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-------------------------~l~~~~  139 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-------------------------QIRSLY  139 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-------------------------CCCCCC
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-------------------------cccccc
Confidence            65555555666666666666666555433321 1334444444444333                         23222 


Q ss_pred             -chhhhCCCCCCEEEccCCCCCCcCchhHhhCC--CCCcEEeccCCcccccccCCCCCCCC------CCEEEeecCCCCc
Q 036932          197 -PSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNN--TKLEALFLTNNSFTGNLQLPKTKHDF------LHHLDVSNNNLTG  267 (790)
Q Consensus       197 -p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~Ls~n~l~~  267 (790)
                       +..+.++++|++|++++|.+++..+..+. .+  ++|+.|+++.|.+.+..+..+..++.      |++|++++|.+++
T Consensus       140 ~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  218 (844)
T 3j0a_A          140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV  218 (844)
T ss_dssp             CCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred             cchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence             24577888999999999999877666543 44  78999999999988765554444433      7888888887777


Q ss_pred             cCChhHHhhc--ccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcC--CcCcEEEccCCcCcccc
Q 036932          268 KLPEDMGIIL--QKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGC--ISLGLLDLSGNNFYGQI  343 (790)
Q Consensus       268 ~~p~~~~~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l--~~L~~L~L~~n~l~~~~  343 (790)
                      .++..+....  ..++.+.++.+....               .+..+.+. ......+.++  ++|+.|++++|.+.+..
T Consensus       219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~---------------~~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~  282 (844)
T 3j0a_A          219 DITGNFSNAISKSQAFSLILAHHIMGA---------------GFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLN  282 (844)
T ss_dssp             TTTSGGGGTSCSCCBSEEECCSSCCBC---------------SSSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred             hHHHHHHhhcCcccccceecccccccc---------------cccccccC-CCChhhhhccccCCccEEECCCCcccccC
Confidence            7766654322  355666665433221               11122232 1222223333  67999999999998888


Q ss_pred             cccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccC
Q 036932          344 FPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH  423 (790)
Q Consensus       344 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  423 (790)
                      +..+..+++|+.|++++|++++..|..|..+++|++|++++|.+++..|..+..++. |+.|++++|.+.+..+..+..+
T Consensus       283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l  361 (844)
T 3j0a_A          283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFL  361 (844)
T ss_dssp             SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT-CCEEECCSCCCCCCCSSCSCSC
T ss_pred             hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC-CCEEECCCCCCCccChhhhcCC
Confidence            888889999999999999998888888889999999999999998888888888888 9999999999988778888899


Q ss_pred             CCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccC-chhhhcCccccEEec
Q 036932          424 GSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVI-PHQISESLTLRFLLL  502 (790)
Q Consensus       424 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L  502 (790)
                      ++|++|++++|.+++...    +++|+.|++++|+++ .+|..   ..+++.|++++|++++.. +..+..+++|+.|++
T Consensus       362 ~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L  433 (844)
T 3j0a_A          362 EKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILIL  433 (844)
T ss_dssp             CCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred             CCCCEEECCCCCCCcccC----CCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeC
Confidence            999999999999886433    678999999999998 55644   467999999999998643 234568999999999


Q ss_pred             cCccccccCCc-cccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccccccccccccccccc
Q 036932          503 RGNYLEGQIPN-QLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHY  581 (790)
Q Consensus       503 ~~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  581 (790)
                      ++|++++..+. .+..+++|+.|++++|.+++..+.....                                        
T Consensus       434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~----------------------------------------  473 (844)
T 3j0a_A          434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW----------------------------------------  473 (844)
T ss_dssp             ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS----------------------------------------
T ss_pred             CCCcccccccccccccCCccccccCCCCccccccccccch----------------------------------------
Confidence            99999876543 4566899999999999997433211000                                        


Q ss_pred             CCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCC
Q 036932          582 GNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKW  660 (790)
Q Consensus       582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~  660 (790)
                        ..|                      ..++.|+.|||++|++++.+|..++.+. |+.|+|++|+|++..|..+.  ++
T Consensus       474 --~~~----------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~  527 (844)
T 3j0a_A          474 --DVF----------------------EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--AN  527 (844)
T ss_dssp             --SCS----------------------SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SC
T ss_pred             --hhh----------------------cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cc
Confidence              000                      2367899999999999998888888887 99999999999988888776  89


Q ss_pred             CCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCcCCCCCCCCCCCCCCCCC
Q 036932          661 IESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTEEV  734 (790)
Q Consensus       661 L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~~~~  734 (790)
                      |+.|||++|+|++.+|..+.   .|+.|++++|++.|.++-    .+|..+...++..+||.+....|..+...
T Consensus       528 L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~----~~f~~~~~~~~~~~~~~~~~~~C~~p~~~  594 (844)
T 3j0a_A          528 LEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL----STFINWLNHTNVTIAGPPADIYCVYPDSF  594 (844)
T ss_dssp             CCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC----CSHHHHHHHTTTTTCCCGGGCCCSSCSSS
T ss_pred             ccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc----HHHHHHHHhcCcccccccccCccCCchhh
Confidence            99999999999999998765   788999999999999874    44444445677788888888889766543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.7e-55  Score=508.47  Aligned_cols=535  Identities=21%  Similarity=0.193  Sum_probs=389.4

Q ss_pred             EEEcCCCCCCcc-ccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCC
Q 036932           40 ILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQ  118 (790)
Q Consensus        40 ~L~Ls~n~i~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  118 (790)
                      +++.++..++.+ ..+.  +++++|++++|.+++..+ ..|.++++|++|++++|.+.+..|.+|+++++|++|++++|+
T Consensus        16 ~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   92 (606)
T 3t6q_A           16 TYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP   92 (606)
T ss_dssp             EEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEECCCCCcccCcCCCC--CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence            556666655532 2343  356666776666664432 456666666666666666666666667777777777777777


Q ss_pred             CCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcc-
Q 036932          119 LSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP-  197 (790)
Q Consensus       119 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp-  197 (790)
                      +++..|..|+++++|++|++++|.+++ ++...+.++++|++|+++                         +|.+..++ 
T Consensus        93 l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~-------------------------~n~l~~~~~  146 (606)
T 3t6q_A           93 LIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLG-------------------------SNHISSIKL  146 (606)
T ss_dssp             CSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECC-------------------------SSCCCCCCC
T ss_pred             ccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECC-------------------------CCcccccCc
Confidence            766666667777777777777776653 222233444444444443                         34443321 


Q ss_pred             hhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCc--EEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHh
Q 036932          198 SFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLE--ALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGI  275 (790)
Q Consensus       198 ~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  275 (790)
                      ..+..+++|++|++++|.+++..|. .+..+++|+  .|++++|.+++..+..+ ....|+.|++++|.   .++..+ .
T Consensus       147 ~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~~~---~~~~~~-~  220 (606)
T 3t6q_A          147 PKGFPTEKLKVLDFQNNAIHYLSKE-DMSSLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQ---NLLVIF-K  220 (606)
T ss_dssp             CTTCCCTTCCEEECCSSCCCEECHH-HHHTTTTCCSEEEECTTCCCCEECTTTT-TTCEEEEEECTTCS---CHHHHH-H
T ss_pred             ccccCCcccCEEEcccCcccccChh-hhhhhcccceeEEecCCCccCccChhHh-hhccccccccCCch---hHHHHh-h
Confidence            1223377889999999988844444 445777777  77777777776543332 23456666666554   122221 1


Q ss_pred             hcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCC--cCcEEEccCCcCcccccccccCCCCC
Q 036932          276 ILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCI--SLGLLDLSGNNFYGQIFPKYMNLTQL  353 (790)
Q Consensus       276 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L  353 (790)
                      .+.++....+....+.           .+...         .++...+.++.  +|+.|++++|.+.+..+..|..+++|
T Consensus       221 ~l~~~~l~~l~~~~~~-----------~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  280 (606)
T 3t6q_A          221 GLKNSTIQSLWLGTFE-----------DMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL  280 (606)
T ss_dssp             HTTTCEEEEEECCCCT-----------TSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTC
T ss_pred             hccccchhheechhhc-----------ccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCC
Confidence            2222222221111111           11111         22233333333  67888888888887777778888888


Q ss_pred             cEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchh-hhccCCCCCEEecC
Q 036932          354 EFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPA-QLLNHGSLNLLSVS  432 (790)
Q Consensus       354 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~  432 (790)
                      ++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..++. |+.|++++|.+.+.+|. .+..+++|++|+++
T Consensus       281 ~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  358 (606)
T 3t6q_A          281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLS  358 (606)
T ss_dssp             SEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred             CEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCc-CCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence            88888888887 66777888888888888888888777778888877 88888888888866655 48889999999999


Q ss_pred             CccccCcc--cccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCch-hhhcCccccEEeccCcccc
Q 036932          433 ENCLSGPM--TSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPH-QISESLTLRFLLLRGNYLE  508 (790)
Q Consensus       433 ~n~l~~~~--~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~  508 (790)
                      +|.+++..  +..+ .+++|++|++++|++++..|..+..+++|+.|++++|++++..|. .+..+++|++|++++|.++
T Consensus       359 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  438 (606)
T 3t6q_A          359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD  438 (606)
T ss_dssp             SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred             CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence            99998876  5555 889999999999999988899999999999999999999987654 4889999999999999999


Q ss_pred             ccCCccccCCCCCCEEEccCCcCcccC-C--hhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCc
Q 036932          509 GQIPNQLCQLRRLGVLDLSHNRISGSI-P--SCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGV  585 (790)
Q Consensus       509 ~~~~~~l~~l~~L~~L~Ls~N~l~g~~-p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  585 (790)
                      +..|..+..+++|+.|++++|++++.. |  ..+                                              
T Consensus       439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----------------------------------------------  472 (606)
T 3t6q_A          439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL----------------------------------------------  472 (606)
T ss_dssp             TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG----------------------------------------------
T ss_pred             CcCHHHHhCCCCCCEEECCCCCCCccccccchhh----------------------------------------------
Confidence            999999999999999999999998521 2  111                                              


Q ss_pred             ccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEE
Q 036932          586 YSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESL  664 (790)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~L  664 (790)
                                             ..++.|+.|++++|++++.+|..++.+. |+.|+|++|++++.+|+.+++++.| .|
T Consensus       473 -----------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L  528 (606)
T 3t6q_A          473 -----------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL  528 (606)
T ss_dssp             -----------------------GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred             -----------------------ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence                                   2367899999999999999999999988 9999999999999999999999999 99


Q ss_pred             EccCCcccccCCccccCCCCCCeEecccCcceecCCC
Q 036932          665 DLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD  701 (790)
Q Consensus       665 dLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~  701 (790)
                      ||++|++++.+|..+..+++|++|++++|+++|.++.
T Consensus       529 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          529 NLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             ECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             ECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            9999999999999999999999999999999998874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.6e-54  Score=499.02  Aligned_cols=517  Identities=19%  Similarity=0.181  Sum_probs=338.3

Q ss_pred             CCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEe
Q 036932           58 KNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA  137 (790)
Q Consensus        58 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  137 (790)
                      +++++|++++|.+++..+ ..+.++++|++|++++|.+.+..|.+|+++++|++|+|++|++++..|..|+++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            444444444444443222 2344445555555555554444444555555555555555555544455555555555555


Q ss_pred             CcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCC--CcchhhhCCCCCCEEEccCCC
Q 036932          138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK--VIPSFLLHQYDLKLLDLSGNN  215 (790)
Q Consensus       138 Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~Ls~n~  215 (790)
                      +++|.+++. +...+.++++|++|++++                         |.+.  .+|..+..+++|++|++++|.
T Consensus       111 L~~n~l~~~-~~~~~~~l~~L~~L~L~~-------------------------n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          111 AVETKLASL-ESFPIGQLITLKKLNVAH-------------------------NFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             CTTSCCCCS-SSSCCTTCTTCCEEECCS-------------------------SCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             ccCCccccc-cccccCCCCCCCEEeCCC-------------------------CcccceechHhHhhcCCCCEEEccCCc
Confidence            555555421 212233333333333322                         2221  244555556666666666666


Q ss_pred             CCCcCchhHhhCCCC----CcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccc
Q 036932          216 LVGDFPTWVLRNNTK----LEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFE  291 (790)
Q Consensus       216 l~~~ip~~~~~~l~~----L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~  291 (790)
                      +++..+..+ +.+++    +++|++++|.+++..+..+... +|++|++++|.+.+......+..++.|+.+++..+.+.
T Consensus       165 l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~  242 (606)
T 3vq2_A          165 IQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK  242 (606)
T ss_dssp             CCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred             ceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence            654333322 22222    3356666666554433333222 56666666666653333333344566666555544332


Q ss_pred             cccchhhhcccccccccCcccccccccChhhhhcCC--cCcEEEc-cCCcCcccccccccCCCCCcEEEcCCcccccccc
Q 036932          292 GYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCI--SLGLLDL-SGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIE  368 (790)
Q Consensus       292 ~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  368 (790)
                      +..        .+.           .++...+.++.  +++.+++ ..|.+.+.++. +..+++|+.|++++|.+. .+|
T Consensus       243 ~~~--------~l~-----------~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~  301 (606)
T 3vq2_A          243 DER--------NLE-----------IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE  301 (606)
T ss_dssp             TSC--------CCS-----------CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC
T ss_pred             cCC--------ccc-----------ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh
Confidence            110        000           11111111111  3455555 55566665555 667777777777777775 344


Q ss_pred             cccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcc--cccc-c
Q 036932          369 EGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPM--TSSF-N  445 (790)
Q Consensus       369 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~-~  445 (790)
                       .+..+++|+.|++++|.+ +.+|. + .++. |+.|++++|...+.+  .+..+++|++|++++|.+++..  +..+ .
T Consensus       302 -~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~-L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~  374 (606)
T 3vq2_A          302 -DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPF-LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLG  374 (606)
T ss_dssp             -CCCTTCCCSEEEEESCCC-SSCCC-C-CCSS-CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred             -hccccccCCEEEcccccC-ccccc-C-CCCc-cceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhcc
Confidence             666777777777777777 46663 3 5555 777777777554433  5667888999999999888763  4555 7


Q ss_pred             ccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCc-hhhhcCccccEEeccCccccccCCccccCCCCCCEE
Q 036932          446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIP-HQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVL  524 (790)
Q Consensus       446 l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L  524 (790)
                      +++|++|++++|.++ .+|..+..+++|+.|++++|++.+..| ..+..+++|++|++++|.+++..|..+..+++|+.|
T Consensus       375 ~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL  453 (606)
T ss_dssp             CSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             CCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence            889999999999988 467888899999999999999998877 678899999999999999999899999999999999


Q ss_pred             EccCCcCccc-CChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccce
Q 036932          525 DLSHNRISGS-IPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRY  603 (790)
Q Consensus       525 ~Ls~N~l~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  603 (790)
                      ++++|++++. +|..+                                                                
T Consensus       454 ~l~~n~l~~~~~~~~~----------------------------------------------------------------  469 (606)
T 3vq2_A          454 KMAGNSFKDNTLSNVF----------------------------------------------------------------  469 (606)
T ss_dssp             ECTTCEEGGGEECSCC----------------------------------------------------------------
T ss_pred             ECCCCcCCCcchHHhh----------------------------------------------------------------
Confidence            9999998863 45432                                                                


Q ss_pred             ecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCC
Q 036932          604 ELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEL  682 (790)
Q Consensus       604 ~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l  682 (790)
                           ..++.|+.|++++|++++.+|..++.+. |+.|+|++|++++.+|..|+++++|+.|||++|+|+ .+|..+..+
T Consensus       470 -----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l  543 (606)
T 3vq2_A          470 -----ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF  543 (606)
T ss_dssp             -----TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred             -----ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence                 2357899999999999998999999887 999999999999999999999999999999999999 677779999


Q ss_pred             C-CCCeEecccCcceecCCCC
Q 036932          683 N-FLSNFNVSFNNLSGLIPDK  702 (790)
Q Consensus       683 ~-~L~~L~ls~N~l~g~iP~~  702 (790)
                      + +|++|++++|++.|.+|..
T Consensus       544 ~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          544 PKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             CTTCCEEECCSCCCCCSSTTH
T ss_pred             cccCcEEEccCCCcccCCccH
Confidence            7 6999999999999988753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.7e-53  Score=489.65  Aligned_cols=515  Identities=20%  Similarity=0.170  Sum_probs=417.2

Q ss_pred             CccceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCc--cccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEec
Q 036932           13 SNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITT--LQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL   90 (790)
Q Consensus        13 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L   90 (790)
                      .++.|++.++++..+.+.+|+++++|++|++++|++..  +.+|.++++|++|++++|.+.+..+ ..+..+++|++|++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFF  112 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEEC
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEeec
Confidence            45677777777777777777888888888888877772  3457777888888888877775433 45777778888888


Q ss_pred             CCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCc--EEEccCCCC
Q 036932           91 RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLE--VLLLSSRTN  168 (790)
Q Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~--~L~L~~n~~  168 (790)
                      ++|.+.+..+..++++++|++|++++|++++..+..+..+++|++|++++|.+++ +++..+..+++|+  .|++++|..
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeEEecCCCcc
Confidence            8887776666677777888888888887776443444557778888888877773 4445677777777  777777765


Q ss_pred             CcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCC----CcCchhHhhCCC--CCcEEeccCCccc
Q 036932          169 MLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLV----GDFPTWVLRNNT--KLEALFLTNNSFT  242 (790)
Q Consensus       169 ~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~----~~ip~~~~~~l~--~L~~L~L~~n~l~  242 (790)
                      .... .. .....+|+.|++++|.  .++..+..+.++....+....+.    ..++...+..+.  +|++|++++|.++
T Consensus       192 ~~~~-~~-~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~  267 (606)
T 3t6q_A          192 AGIE-PG-AFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF  267 (606)
T ss_dssp             CEEC-TT-TTTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred             CccC-hh-HhhhccccccccCCch--hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence            4322 22 2333577777777775  44445555544443333322221    133333333333  7999999999999


Q ss_pred             ccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhh
Q 036932          243 GNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL  322 (790)
Q Consensus       243 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~  322 (790)
                      +..+..+..+++|++|++++|.++ .+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|...
T Consensus       268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  345 (606)
T 3t6q_A          268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC  345 (606)
T ss_dssp             SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred             ccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence            887777889999999999999999 8998774 58999999999999998888999999999999999999998999888


Q ss_pred             hhcCCcCcEEEccCCcCcccc--cccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchh-hhhcc
Q 036932          323 LTGCISLGLLDLSGNNFYGQI--FPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHW-IGNFS  399 (790)
Q Consensus       323 ~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~  399 (790)
                      +..+++|++|++++|.+.+..  +..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+..|.. +..++
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            889999999999999998776  678899999999999999999888999999999999999999999876654 77787


Q ss_pred             CCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcc---cccc-cccccceeeccCCcCccccchhhcCCCCCcE
Q 036932          400 SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPM---TSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLIT  475 (790)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~  475 (790)
                      . |+.|++++|.+++..|..+..+++|++|++++|.+++..   +..+ .+++|++|++++|++++..|..+..+++|++
T Consensus       426 ~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  504 (606)
T 3t6q_A          426 L-LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH  504 (606)
T ss_dssp             T-CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             c-CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence            7 999999999999999999999999999999999998732   2345 8899999999999999888999999999999


Q ss_pred             EeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh
Q 036932          476 LDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS  537 (790)
Q Consensus       476 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~  537 (790)
                      |++++|++++..|.++..+++| .|++++|++++..|..+..+++|+.|++++|++.+..+.
T Consensus       505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            9999999999999999999999 999999999999999999999999999999999987764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.5e-52  Score=498.25  Aligned_cols=525  Identities=20%  Similarity=0.202  Sum_probs=380.0

Q ss_pred             EEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCC-hhhhcCCCCCCEEeCcC
Q 036932           62 ALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTL-PSAITTLTSLEYLALLD  140 (790)
Q Consensus        62 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~  140 (790)
                      ..|.+++.++.++.     ..++|++|+|++|.+.+..|..|.++++|++|||++|...+.+ |..|+++++|++|+|++
T Consensus         8 ~~dcs~~~L~~vP~-----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ-----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEESCCCSSCCCS-----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             EEEccCCCCCCCCC-----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            55666666664432     3456777777777777666667777777777777777544444 55667777777777777


Q ss_pred             CcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCC-Ccch--hhhCCCCCCEEEccCCCCC
Q 036932          141 NNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK-VIPS--FLLHQYDLKLLDLSGNNLV  217 (790)
Q Consensus       141 n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~lp~--~l~~l~~L~~L~Ls~n~l~  217 (790)
                      |.+++..| ..|.++++|++|++++|                         .+. .+|.  .+..+++|++|++++|.++
T Consensus        83 N~l~~~~p-~~~~~l~~L~~L~Ls~n-------------------------~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~  136 (844)
T 3j0a_A           83 SKIYFLHP-DAFQGLFHLFELRLYFC-------------------------GLSDAVLKDGYFRNLKALTRLDLSKNQIR  136 (844)
T ss_dssp             CCCCEECT-TSSCSCSSCCCEECTTC-------------------------CCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred             CcCcccCH-hHccCCcccCEeeCcCC-------------------------CCCcccccCccccccCCCCEEECCCCccc
Confidence            66654322 33444444444444333                         331 1222  2445556666666666555


Q ss_pred             CcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhc--ccccEecccCCccccccc
Q 036932          218 GDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIIL--QKLLYIDMSDNRFEGYLP  295 (790)
Q Consensus       218 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~Ls~n~l~~~~p  295 (790)
                      +..+...+.++                        ++|++|++++|.+++..+..+.. +  ++|+.|+++.|.+.+..|
T Consensus       137 ~~~~~~~~~~L------------------------~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~  191 (844)
T 3j0a_A          137 SLYLHPSFGKL------------------------NSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVS  191 (844)
T ss_dssp             CCCCCGGGGTC------------------------SSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCC
T ss_pred             ccccchhHhhC------------------------CCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccccccc
Confidence            43332233344                        44555555555555444444432 3  566666666666665555


Q ss_pred             hhhhcccc------cccccCcccccccccChhhhhc--CCcCcEEEccC---------CcCcccccccccCC--CCCcEE
Q 036932          296 SSIGEMKA------LIFLRLPKNNFSGELPAPLLTG--CISLGLLDLSG---------NNFYGQIFPKYMNL--TQLEFL  356 (790)
Q Consensus       296 ~~l~~l~~------L~~L~Ls~n~l~~~i~~~~~~~--l~~L~~L~L~~---------n~l~~~~~~~~~~l--~~L~~L  356 (790)
                      ..++.+++      |++|++++|.+.+.++..+...  ..+++.+.++.         +.+.......|..+  ++|++|
T Consensus       192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L  271 (844)
T 3j0a_A          192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL  271 (844)
T ss_dssp             CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred             cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence            55444443      6667777766665555544322  24566666652         33333444455544  789999


Q ss_pred             EcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932          357 YLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL  436 (790)
Q Consensus       357 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  436 (790)
                      ++++|.+.+..+..+..+++|+.|++++|++++..|..+..++. |+.|++++|.+++..|..+..+++|++|++++|.+
T Consensus       272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i  350 (844)
T 3j0a_A          272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN-LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI  350 (844)
T ss_dssp             ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS-CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC
T ss_pred             ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC-CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC
Confidence            99999999988999999999999999999999888999999988 99999999999988899999999999999999999


Q ss_pred             cCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccC-Ccc
Q 036932          437 SGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQI-PNQ  514 (790)
Q Consensus       437 ~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~  514 (790)
                      ++..+..+ .+++|++|++++|.+++ ++    .+++|+.|++++|+++ .+|..   ..+++.|++++|++++.. +..
T Consensus       351 ~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~  421 (844)
T 3j0a_A          351 AIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYF  421 (844)
T ss_dssp             CCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHH
T ss_pred             CccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhh
Confidence            98888877 89999999999999984 33    2789999999999998 44543   567999999999998643 334


Q ss_pred             ccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceE
Q 036932          515 LCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVK  594 (790)
Q Consensus       515 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (790)
                      +..+++|+.|++++|++++..+....                                                      
T Consensus       422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------------------------------------  447 (844)
T 3j0a_A          422 LLRVPHLQILILNQNRFSSCSGDQTP------------------------------------------------------  447 (844)
T ss_dssp             HTTCTTCCEEEEESCCCCCCCSSSSS------------------------------------------------------
T ss_pred             hhcCCccceeeCCCCccccccccccc------------------------------------------------------
Confidence            56899999999999999854332100                                                      


Q ss_pred             EEEeeccceecccCcccccceEEECCCCccc-----ccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccC
Q 036932          595 VEFMTKNRYELYNGSNIKYMVGLDLSCNQLT-----GGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSH  668 (790)
Q Consensus       595 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~  668 (790)
                                    ..+++|+.|+|++|.++     +..|..+..+. |+.|+|++|+|++.+|..|+++++|+.|||++
T Consensus       448 --------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  513 (844)
T 3j0a_A          448 --------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS  513 (844)
T ss_dssp             --------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred             --------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence                          12568999999999997     44556677777 99999999999999999999999999999999


Q ss_pred             CcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCcCCCCCCC
Q 036932          669 NRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTI  724 (790)
Q Consensus       669 N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~  724 (790)
                      |+|++.+|..+.  ++|+.|||++|+++|.+|..  |..+....+.|||..|.+++
T Consensus       514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             CCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence            999998888776  89999999999999999964  55667777899999998764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.2e-52  Score=481.70  Aligned_cols=528  Identities=19%  Similarity=0.149  Sum_probs=405.2

Q ss_pred             CCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCc
Q 036932           60 LEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALL  139 (790)
Q Consensus        60 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  139 (790)
                      -++++.+++.++.++.  .+  .++|++|++++|.+.+..+..|.++++|++|++++|++++..|..|+++++|++|+++
T Consensus        13 ~~~~~c~~~~l~~ip~--~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPD--DI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TTEEECTTSCCSSCCT--TS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCceEccCCCcccCCC--CC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            4678899988886553  22  2789999999999999988899999999999999999998889999999999999999


Q ss_pred             CCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcc-hhhhCCCCCCEEEccCCCCCC
Q 036932          140 DNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP-SFLLHQYDLKLLDLSGNNLVG  218 (790)
Q Consensus       140 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~  218 (790)
                      +|.+++..| ..+.++++|++|++++|                         .+..++ ..+..+++|++|++++|.+++
T Consensus        89 ~n~l~~~~p-~~~~~l~~L~~L~L~~n-------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~  142 (606)
T 3vq2_A           89 GNPIQSFSP-GSFSGLTSLENLVAVET-------------------------KLASLESFPIGQLITLKKLNVAHNFIHS  142 (606)
T ss_dssp             TCCCCCCCT-TSSTTCTTCCEEECTTS-------------------------CCCCSSSSCCTTCTTCCEEECCSSCCCC
T ss_pred             CCcccccCh-hhcCCcccCCEEEccCC-------------------------ccccccccccCCCCCCCEEeCCCCcccc
Confidence            999985434 45666666666555544                         444443 456777888888888888874


Q ss_pred             -cCchhHhhCCCCCcEEeccCCcccccccCCCCCCCC----CCEEEeecCCCCccCChhHHhhcccccEecccCCccccc
Q 036932          219 -DFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF----LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGY  293 (790)
Q Consensus       219 -~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~----L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~  293 (790)
                       .+|..+ .++++|++|++++|.+++..+..+..+.+    +++|++++|.++ .++...+. ..+|++|+++       
T Consensus       143 ~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~-~~~L~~L~L~-------  212 (606)
T 3vq2_A          143 CKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ-GIKLHELTLR-------  212 (606)
T ss_dssp             CCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEE-------
T ss_pred             eechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCccccc-Cceeeeeecc-------
Confidence             456544 36777777777777666543333322222    224555555554 33333332 2244444444       


Q ss_pred             cchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcc---------cccccccCCCCCcEEEc-CCccc
Q 036932          294 LPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG---------QIFPKYMNLTQLEFLYL-ENNKF  363 (790)
Q Consensus       294 ~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~L-~~n~l  363 (790)
                                       +|.+.+......+.++++|+.+++..+.+..         ..+..+..+ .++.+++ ..+.+
T Consensus       213 -----------------~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~  274 (606)
T 3vq2_A          213 -----------------GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDF  274 (606)
T ss_dssp             -----------------SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTC
T ss_pred             -----------------CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc-cHhheeccccccc
Confidence                             4444433333333445555544443332221         112222222 5677777 77788


Q ss_pred             ccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCccccc
Q 036932          364 SGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSS  443 (790)
Q Consensus       364 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  443 (790)
                      .+..|. +..+++|+.|++++|.+. .+| .+..++. |+.|++++|.+ +.+| .+ .+++|+.|++++|...+.. ..
T Consensus       275 ~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~-L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~  346 (606)
T 3vq2_A          275 SDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFK-WQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KK  346 (606)
T ss_dssp             CGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCC-CSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CC
T ss_pred             cccccc-cccCCCCCEEEecCccch-hhh-hcccccc-CCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hh
Confidence            888887 889999999999999997 566 7888877 99999999999 6888 45 9999999999999665544 22


Q ss_pred             ccccccceeeccCCcCccc--cchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCC-ccccCCCC
Q 036932          444 FNLSSLEHLYLQMNSLSGP--IPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIP-NQLCQLRR  520 (790)
Q Consensus       444 ~~l~~L~~L~L~~n~l~~~--~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~  520 (790)
                      ..+++|++|++++|++++.  +|..+..+++|++|++++|++++ +|..+..+++|++|++++|++.+..| ..+..+++
T Consensus       347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  425 (606)
T 3vq2_A          347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK  425 (606)
T ss_dssp             CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred             ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence            2889999999999999866  48899999999999999999986 56889999999999999999998888 78999999


Q ss_pred             CCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeec
Q 036932          521 LGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTK  600 (790)
Q Consensus       521 L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (790)
                      |+.|++++|++.+..|..+.                                                            
T Consensus       426 L~~L~l~~n~l~~~~~~~~~------------------------------------------------------------  445 (606)
T 3vq2_A          426 LLYLDISYTNTKIDFDGIFL------------------------------------------------------------  445 (606)
T ss_dssp             CCEEECTTSCCEECCTTTTT------------------------------------------------------------
T ss_pred             CCEEECcCCCCCccchhhhc------------------------------------------------------------
Confidence            99999999999987776543                                                            


Q ss_pred             cceecccCcccccceEEECCCCccccc-CChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCcc
Q 036932          601 NRYELYNGSNIKYMVGLDLSCNQLTGG-IPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPR  678 (790)
Q Consensus       601 ~~~~~~~~~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~  678 (790)
                               .++.|+.|++++|++++. +|..++.+. |+.|+|++|++++.+|..|+++++|+.|||++|++++.+|..
T Consensus       446 ---------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  516 (606)
T 3vq2_A          446 ---------GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH  516 (606)
T ss_dssp             ---------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred             ---------CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence                     257899999999999984 788898887 999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCeEecccCcceecCCCC-CcCC-CcCcccccCCcCCCCCCC
Q 036932          679 LTELNFLSNFNVSFNNLSGLIPDK-GQFA-TFDESSYRGNLHLCGPTI  724 (790)
Q Consensus       679 l~~l~~L~~L~ls~N~l~g~iP~~-~~~~-~~~~~~~~gn~~lcg~~~  724 (790)
                      +..+++|++||+++|+++ .+|.. ..+. .+....+.||+..|.++.
T Consensus       517 ~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          517 YNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             ccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            999999999999999999 57765 3332 355567889999987664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.3e-49  Score=450.85  Aligned_cols=511  Identities=20%  Similarity=0.208  Sum_probs=339.9

Q ss_pred             CEEEcCCCCCCccc-cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCC
Q 036932           39 KILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYN  117 (790)
Q Consensus        39 ~~L~Ls~n~i~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  117 (790)
                      ++++.++.+++.++ .+.  +++++|++++|.+++..+ .+|..+++|++|++++|.+.+..+.+|+++++|++|++++|
T Consensus        10 ~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n   86 (570)
T 2z63_A           10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (570)
T ss_dssp             TEEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             cEEEeCCCCccccCCCcc--ccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence            34555555554222 222  356666666666553322 34555555555555555555555555666666666666666


Q ss_pred             CCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcc
Q 036932          118 QLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP  197 (790)
Q Consensus       118 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp  197 (790)
                      ++++..|..|+++++|++|++++|.+++ ++..                                               
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~-----------------------------------------------  118 (570)
T 2z63_A           87 PIQSLALGAFSGLSSLQKLVAVETNLAS-LENF-----------------------------------------------  118 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCC-STTC-----------------------------------------------
T ss_pred             cCCccCHhhhcCcccccccccccccccc-CCCc-----------------------------------------------
Confidence            6655555555666666666665555542 1111                                               


Q ss_pred             hhhhCCCCCCEEEccCCCCCC-cCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCC----CEEEeecCCCCccCChh
Q 036932          198 SFLLHQYDLKLLDLSGNNLVG-DFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFL----HHLDVSNNNLTGKLPED  272 (790)
Q Consensus       198 ~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L----~~L~Ls~n~l~~~~p~~  272 (790)
                       .+..+++|++|++++|.+++ .+|..+ .++++|++|++++|.+++..+..+..+++|    +.+++++|.+.+ ++..
T Consensus       119 -~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~-~~~~  195 (570)
T 2z63_A          119 -PIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPG  195 (570)
T ss_dssp             -SCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTT
T ss_pred             -cccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee-cCHH
Confidence             23445566666666666664 356544 467888888888777766543333344444    566666666653 3323


Q ss_pred             HHhhcccccEecccCCcccc-ccchhhhcccccccccCcccccc-----cccChhhhhcCCcCcEEEccCCcCccccccc
Q 036932          273 MGIILQKLLYIDMSDNRFEG-YLPSSIGEMKALIFLRLPKNNFS-----GELPAPLLTGCISLGLLDLSGNNFYGQIFPK  346 (790)
Q Consensus       273 ~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~-----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~  346 (790)
                      .+. ..+|++|++++|.... .++..+..++.++...+....+.     ..++...+.+++                   
T Consensus       196 ~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~-------------------  255 (570)
T 2z63_A          196 AFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC-------------------  255 (570)
T ss_dssp             TTT-TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG-------------------
T ss_pred             Hhc-cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc-------------------
Confidence            322 2256666666553221 23334444444443333221111     011111111111                   


Q ss_pred             ccCCCCCcEEEcCCc-ccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCC
Q 036932          347 YMNLTQLEFLYLENN-KFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGS  425 (790)
Q Consensus       347 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  425 (790)
                        .+ .++.++++++ .+.+..+..+..+++|+.|++++|.+. .+|.++..+ . |+.|++++|.+. .+|.  ..+++
T Consensus       256 --~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~-L~~L~l~~n~~~-~l~~--~~l~~  326 (570)
T 2z63_A          256 --NL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-G-WQHLELVNCKFG-QFPT--LKLKS  326 (570)
T ss_dssp             --GS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-C-CSEEEEESCBCS-SCCB--CBCSS
T ss_pred             --cc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-C-ccEEeeccCccc-ccCc--ccccc
Confidence              11 2445555555 455556666666667777777777666 466666665 4 777777777666 4444  35677


Q ss_pred             CCEEecCCccccCcccccccccccceeeccCCcCcccc--chhhcCCCCCcEEeccCCcccccCchhhhcCccccEEecc
Q 036932          426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPI--PIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLR  503 (790)
Q Consensus       426 L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  503 (790)
                      |+.|++++|.+.+..+. ..+++|++|++++|++++..  |..+..+++|++|++++|++++..+. +..+++|+.|+++
T Consensus       327 L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~  404 (570)
T 2z63_A          327 LKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ  404 (570)
T ss_dssp             CCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred             cCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEcc
Confidence            88888888887766554 46788999999999988654  78889999999999999999866554 8899999999999


Q ss_pred             CccccccCC-ccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccC
Q 036932          504 GNYLEGQIP-NQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYG  582 (790)
Q Consensus       504 ~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  582 (790)
                      +|.+.+..| ..+..+++|+.|++++|++.+..|..+.                                          
T Consensus       405 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------------  442 (570)
T 2z63_A          405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN------------------------------------------  442 (570)
T ss_dssp             TSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT------------------------------------------
T ss_pred             CCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh------------------------------------------
Confidence            999987766 5688899999999999999877665432                                          


Q ss_pred             CCcccccCcceEEEEeeccceecccCcccccceEEECCCCccc-ccCChhhhhce-ecceeccCCccccccCccccCCCC
Q 036932          583 NGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLT-GGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKW  660 (790)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~  660 (790)
                                                 .++.|+.|++++|+++ +.+|..++.+. |+.|+|++|++++.+|..|+++++
T Consensus       443 ---------------------------~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          443 ---------------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             ---------------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             ---------------------------cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence                                       2568999999999998 68998898887 999999999999999999999999


Q ss_pred             CCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCC
Q 036932          661 IESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKG  703 (790)
Q Consensus       661 L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~  703 (790)
                      |+.||+++|++++.+|..+..+++|+.|++++|+++|.+|...
T Consensus       496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            9999999999999999999999999999999999999999753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-47  Score=438.92  Aligned_cols=370  Identities=17%  Similarity=0.146  Sum_probs=240.9

Q ss_pred             CCCCCcEEeccCCcc-cccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccc
Q 036932          227 NNTKLEALFLTNNSF-TGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALI  305 (790)
Q Consensus       227 ~l~~L~~L~L~~n~l-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  305 (790)
                      ++++|++|++++|.+ .......+..+++|++|++++|.+++.+|..+. .+++|++|+++.|.+.              
T Consensus       121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~--------------  185 (549)
T 2z81_A          121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLSESA--------------  185 (549)
T ss_dssp             TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSBST--------------
T ss_pred             ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCceEecccCccc--------------
Confidence            556666666666652 222222344455555555555555544444432 2445555555555443              


Q ss_pred             cccCcccccccccChhhhhcCCcCcEEEccCCcCcccc---cccccCCCCCcEEEcCCcccccccc----cccCCCCCCc
Q 036932          306 FLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQI---FPKYMNLTQLEFLYLENNKFSGKIE----EGLSNSNELN  378 (790)
Q Consensus       306 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~  378 (790)
                                 .+|...+..+++|++|++++|.+.+..   ......+++|+.|++++|.+++..+    ..+..+++|+
T Consensus       186 -----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~  254 (549)
T 2z81_A          186 -----------FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS  254 (549)
T ss_dssp             -----------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred             -----------ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence                       333333334444444444444444321   0111233444555555444433221    1223344455


Q ss_pred             EEEcccccCcCCC------chhhhhccCCCeEEEccCccccc-----cchhhhccCCCCCEEecCCccccCcccccc-cc
Q 036932          379 ELDISNNLLSGHI------PHWIGNFSSDLKVLLMSKMFLKG-----NIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NL  446 (790)
Q Consensus       379 ~L~Ls~n~l~~~~------p~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l  446 (790)
                      .+++++|.+.+..      ...+..+.. ++.+++.++.+..     .++..+...++|+.|++++|.+.......+ .+
T Consensus       255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l  333 (549)
T 2z81_A          255 EVEFDDCTLNGLGDFNPSESDVVSELGK-VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL  333 (549)
T ss_dssp             EEEEESCEEECCSCCCCCTTTCCCCCTT-CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred             ccccccccccccccccccchhhhhhhcc-cccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence            5555555443311      011222233 5555555554332     123334445688899999988875444444 68


Q ss_pred             cccceeeccCCcCccccch---hhcCCCCCcEEeccCCcccccCc--hhhhcCccccEEeccCccccccCCccccCCCCC
Q 036932          447 SSLEHLYLQMNSLSGPIPI---ALFRSSNLITLDLRDNRFSGVIP--HQISESLTLRFLLLRGNYLEGQIPNQLCQLRRL  521 (790)
Q Consensus       447 ~~L~~L~L~~n~l~~~~p~---~~~~~~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L  521 (790)
                      ++|++|++++|++++.+|.   .+..+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L  412 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM  412 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC
T ss_pred             ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc
Confidence            8999999999999877653   36788999999999999986543  45888999999999999998 678888899999


Q ss_pred             CEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeecc
Q 036932          522 GVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKN  601 (790)
Q Consensus       522 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (790)
                      +.|++++|+++ .+|.++                                                              
T Consensus       413 ~~L~Ls~N~l~-~l~~~~--------------------------------------------------------------  429 (549)
T 2z81_A          413 RFLNLSSTGIR-VVKTCI--------------------------------------------------------------  429 (549)
T ss_dssp             CEEECTTSCCS-CCCTTS--------------------------------------------------------------
T ss_pred             cEEECCCCCcc-cccchh--------------------------------------------------------------
Confidence            99999999987 344221                                                              


Q ss_pred             ceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCcccc
Q 036932          602 RYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLT  680 (790)
Q Consensus       602 ~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~  680 (790)
                               .+.|+.||+++|++++.+    +.+. |+.|+|++|+|+ .+|. .+.+++|+.|||++|+|++.+|..+.
T Consensus       430 ---------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~  494 (549)
T 2z81_A          430 ---------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD  494 (549)
T ss_dssp             ---------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred             ---------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence                     247899999999999754    3454 999999999999 7886 57899999999999999999999999


Q ss_pred             CCCCCCeEecccCcceecCCCC
Q 036932          681 ELNFLSNFNVSFNNLSGLIPDK  702 (790)
Q Consensus       681 ~l~~L~~L~ls~N~l~g~iP~~  702 (790)
                      .+++|+.|++++|+++|.+|..
T Consensus       495 ~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          495 RLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             GCTTCCEEECCSSCBCCCHHHH
T ss_pred             cCcccCEEEecCCCccCCCccH
Confidence            9999999999999999999843

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-46  Score=433.50  Aligned_cols=506  Identities=21%  Similarity=0.157  Sum_probs=392.8

Q ss_pred             cceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCcc--ccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCC
Q 036932           15 KWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG   92 (790)
Q Consensus        15 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~   92 (790)
                      +.+...+.+++.++. .+  .+++++|++++|+++.+  .+|.++++|++|++++|.+++.. ...|.++++|++|++++
T Consensus        10 ~~~~c~~~~l~~ip~-~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A           10 ITYQCMELNFYKIPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TEEECCSSCCSSCCS-SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTT
T ss_pred             cEEEeCCCCccccCC-Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccC-cccccCchhCCEEeCcC
Confidence            445555566666664 22  25678888888887733  35777888888888888777543 34677788888888888


Q ss_pred             CcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCcc-ccchhhhhCCCCCcEEEccCCCCCcc
Q 036932           93 INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEG-TFLLNSLANHSKLEVLLLSSRTNMLS  171 (790)
Q Consensus        93 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L~~L~L~~n~~~~~  171 (790)
                      |.+.+..|.+|+++++|++|++++|++++..+..++++++|++|++++|.+++ .+| ..+.++++|++|++++|... .
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~l~~n~l~-~  163 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQ-S  163 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECTTSCCC-E
T ss_pred             CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecCh-hhhcccCCCCEEeCcCCccc-e
Confidence            88777777778888888888888888776555567788888888888887765 234 45777888888888777643 2


Q ss_pred             cccCCCCCCccc----eEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccc----
Q 036932          172 VKTENFLPTFQL----KVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTG----  243 (790)
Q Consensus       172 ~~~~~~~~~~~L----~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~----  243 (790)
                      +....+..+.+|    +.+++++|.+..++.......+|+.|++++|..........+..++.++...+....+..    
T Consensus       164 ~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  243 (570)
T 2z63_A          164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  243 (570)
T ss_dssp             ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred             ecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence            333345555556    678888888866655444445788888888755433223334567777766654333221    


Q ss_pred             --cccCCCCCCC--CCCEEEeecC-CCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCccccccccc
Q 036932          244 --NLQLPKTKHD--FLHHLDVSNN-NLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGEL  318 (790)
Q Consensus       244 --~~~~~~~~~~--~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i  318 (790)
                        .....+..++  .++.++++++ .+.+.+|..+ ..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+
T Consensus       244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l  319 (570)
T 2z63_A          244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QF  319 (570)
T ss_dssp             EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT-GGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SC
T ss_pred             hhcchhhhccccccchhhhhhhcchhhhhhchhhh-cCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-cc
Confidence              1111122222  3567888887 6666666665 45899999999999998 688888888 9999999999998 78


Q ss_pred             ChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCccccccc--ccccCCCCCCcEEEcccccCcCCCchhhh
Q 036932          319 PAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKI--EEGLSNSNELNELDISNNLLSGHIPHWIG  396 (790)
Q Consensus       319 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  396 (790)
                      |.   ..+++|+.|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+. |..+.
T Consensus       320 ~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~  393 (570)
T 2z63_A          320 PT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFL  393 (570)
T ss_dssp             CB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEE
T ss_pred             Cc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-ccccc
Confidence            76   3688999999999998876654  67899999999999998654  67788999999999999999854 44488


Q ss_pred             hccCCCeEEEccCccccccch-hhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCc-cccchhhcCCCCC
Q 036932          397 NFSSDLKVLLMSKMFLKGNIP-AQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLS-GPIPIALFRSSNL  473 (790)
Q Consensus       397 ~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~-~~~p~~~~~~~~L  473 (790)
                      .++. |+.|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+ .+++|++|++++|.++ +.+|..+..+++|
T Consensus       394 ~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  472 (570)
T 2z63_A          394 GLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  472 (570)
T ss_dssp             TCTT-CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             ccCC-CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence            8888 9999999999998766 578899999999999999999888888 8999999999999998 5789999999999


Q ss_pred             cEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh
Q 036932          474 ITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS  537 (790)
Q Consensus       474 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~  537 (790)
                      ++|++++|++++..|.++..+++|++|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus       473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9999999999999999999999999999999999999888999999999999999999999885

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3e-46  Score=427.36  Aligned_cols=483  Identities=19%  Similarity=0.202  Sum_probs=356.0

Q ss_pred             CCEEEcCCCCCCccc-cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccC
Q 036932           38 LKILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISY  116 (790)
Q Consensus        38 L~~L~Ls~n~i~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  116 (790)
                      ..+.|.+++.++.++ .+.  ++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|.+|+++++|++||+++
T Consensus         7 ~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   83 (549)
T 2z81_A            7 SGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD   83 (549)
T ss_dssp             TSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CceEECCCCccccccccCC--CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence            334566666666333 332  567777777776664432 3566677777777777777766666777777777777777


Q ss_pred             CCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCC-C
Q 036932          117 NQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK-V  195 (790)
Q Consensus       117 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~  195 (790)
                      |++++..|..|+++++|++|++++|.+++.-.+..+.++++|++|++++|.....++...+..+++|++|++++|.+. .
T Consensus        84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            777766666677777777777777777642222356677777777777776555665556777777777777777774 4


Q ss_pred             cchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCC---CCCCCCCCEEEeecCCCCccCChh
Q 036932          196 IPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLP---KTKHDFLHHLDVSNNNLTGKLPED  272 (790)
Q Consensus       196 lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~p~~  272 (790)
                      .|..+..+++|+.|+++.|.+. .+|.+++..+++|++|++++|.+++....+   ...+++|+.|++++|.+.+..+..
T Consensus       164 ~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  242 (549)
T 2z81_A          164 QSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE  242 (549)
T ss_dssp             CTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred             ChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence            6777788888888888888876 677777777888888888888887753111   235778888999888887655544


Q ss_pred             HH---hhcccccEecccCCcccccc------chhhhcccccccccCcccccccc-----cChhhhhcCCcCcEEEccCCc
Q 036932          273 MG---IILQKLLYIDMSDNRFEGYL------PSSIGEMKALIFLRLPKNNFSGE-----LPAPLLTGCISLGLLDLSGNN  338 (790)
Q Consensus       273 ~~---~~l~~L~~L~Ls~n~l~~~~------p~~l~~l~~L~~L~Ls~n~l~~~-----i~~~~~~~l~~L~~L~L~~n~  338 (790)
                      +.   ..+++|+.+++++|.+.+..      ...+..+.+|+.|++.++.+...     ++ ..+...++|+.|++++|.
T Consensus       243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~-~~~~~~~~L~~L~l~~n~  321 (549)
T 2z81_A          243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS-TVYSLLEKVKRITVENSK  321 (549)
T ss_dssp             HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC-HHHHHSTTCCEEEEESSC
T ss_pred             HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch-hhhhhcccceEEEeccCc
Confidence            32   23568888888888876531      12345567788888887765421     11 123446789999999998


Q ss_pred             Ccccccccc-cCCCCCcEEEcCCcccccccc---cccCCCCCCcEEEcccccCcCCCc--hhhhhccCCCeEEEccCccc
Q 036932          339 FYGQIFPKY-MNLTQLEFLYLENNKFSGKIE---EGLSNSNELNELDISNNLLSGHIP--HWIGNFSSDLKVLLMSKMFL  412 (790)
Q Consensus       339 l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~~~~~L~~L~l~~n~l  412 (790)
                      +. .+|..+ ..+++|++|++++|++++..|   ..+..+++|++|++++|++++..+  ..+..++. |+.|++++|++
T Consensus       322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~-L~~L~Ls~N~l  399 (549)
T 2z81_A          322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN-LTSLDISRNTF  399 (549)
T ss_dssp             CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT-CCEEECTTCCC
T ss_pred             cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC-CCEEECCCCCC
Confidence            87 445544 578999999999999887654   346788899999999999885432  45777777 99999999988


Q ss_pred             cccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhh
Q 036932          413 KGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQIS  492 (790)
Q Consensus       413 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~  492 (790)
                      + .+|..+..+++|++|++++|.+++.....  .++|++|++++|++++.+    ..+++|++|++++|+++ .+|. ..
T Consensus       400 ~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~  470 (549)
T 2z81_A          400 H-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-AS  470 (549)
T ss_dssp             C-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred             c-cCChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cc
Confidence            8 67888888999999999999988644332  368999999999999643    57899999999999998 5665 46


Q ss_pred             cCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932          493 ESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP  536 (790)
Q Consensus       493 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p  536 (790)
                      .+++|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus       471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            78999999999999999999999999999999999999998887

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.1e-47  Score=444.20  Aligned_cols=482  Identities=17%  Similarity=0.193  Sum_probs=306.2

Q ss_pred             CCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCC------CC------CChhhhcCCCCCCEEeCcCCcCccccchh
Q 036932           83 KNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQL------SG------TLPSAITTLTSLEYLALLDNNFEGTFLLN  150 (790)
Q Consensus        83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i------~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  150 (790)
                      .+++.|+|+++.+.|.+|++++++++|++|||++|.+      .+      .+|...  +..|+ +++++|.+.+.++..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            5788888988888888888888999999999988865      22      333333  34555 666666666554432


Q ss_pred             hhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCC--CCCCCCcchhhhCCCCCCEEEccCCCCCCc-CchhHhhC
Q 036932          151 SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLP--NYNLKVIPSFLLHQYDLKLLDLSGNNLVGD-FPTWVLRN  227 (790)
Q Consensus       151 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~--~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~-ip~~~~~~  227 (790)
                      ....+..+..+++.....       .......++.+.+.  .|+++.+|..+.++++|++|+|++|.+++. ++...   
T Consensus       158 ~~~~~~~l~~~~l~~~~~-------~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~---  227 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSI-------KKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW---  227 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCC-------CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC---
T ss_pred             HHHHHHHHhhcCcccccc-------ccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccc---
Confidence            111111111111111000       00000111111111  233322444444444555555555444432 00000   


Q ss_pred             CCCCcEEeccCCcccccccCCCC--CCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCc-ccc-ccchhhhcc--
Q 036932          228 NTKLEALFLTNNSFTGNLQLPKT--KHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNR-FEG-YLPSSIGEM--  301 (790)
Q Consensus       228 l~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l--  301 (790)
                      .+      -......+..+..+.  .+++|++|++++|.+.|.+|..+. .+++|++|++++|+ +++ .+|..++.+  
T Consensus       228 ~~------~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~  300 (636)
T 4eco_A          228 EN------ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALAD  300 (636)
T ss_dssp             SC------TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHH
T ss_pred             cc------cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhc
Confidence            00      000000001334444  667777777777777777776664 47777777777776 776 677777665  


Q ss_pred             ----cccccccCcccccccccCh-hhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCC
Q 036932          302 ----KALIFLRLPKNNFSGELPA-PLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNE  376 (790)
Q Consensus       302 ----~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  376 (790)
                          ++|++|++++|+++ .+|. ..+..+++|++|++++|.+.|.+| .+..+++|++|++++|.++ .+|..+..+++
T Consensus       301 ~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  377 (636)
T 4eco_A          301 APVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTE  377 (636)
T ss_dssp             SGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred             cccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcc
Confidence                77777777777777 6765 234567777777777777776666 6677777777777777777 66666777777


Q ss_pred             -CcEEEcccccCcCCCchhhhhcc--CCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceee
Q 036932          377 -LNELDISNNLLSGHIPHWIGNFS--SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLY  453 (790)
Q Consensus       377 -L~~L~Ls~n~l~~~~p~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~  453 (790)
                       |++|++++|+++ .+|..+....  . |+.|++++|.+++.+|..+..+                ....+.+++|++|+
T Consensus       378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~~----------------~~~~~~~~~L~~L~  439 (636)
T 4eco_A          378 QVENLSFAHNKLK-YIPNIFDAKSVSV-MSAIDFSYNEIGSVDGKNFDPL----------------DPTPFKGINVSSIN  439 (636)
T ss_dssp             TCCEEECCSSCCS-SCCSCCCTTCSSC-EEEEECCSSCTTTTTTCSSCTT----------------CSSCCCCCCEEEEE
T ss_pred             cCcEEEccCCcCc-ccchhhhhcccCc-cCEEECcCCcCCCcchhhhccc----------------ccccccCCCCCEEE
Confidence             777777777777 6666555443  3 5566666665555555444310                00111345677777


Q ss_pred             ccCCcCccccch-hhcCCCCCcEEeccCCcccccCchh-hhc-------CccccEEeccCccccccCCcccc--CCCCCC
Q 036932          454 LQMNSLSGPIPI-ALFRSSNLITLDLRDNRFSGVIPHQ-ISE-------SLTLRFLLLRGNYLEGQIPNQLC--QLRRLG  522 (790)
Q Consensus       454 L~~n~l~~~~p~-~~~~~~~L~~L~L~~N~l~~~~p~~-~~~-------l~~L~~L~L~~N~l~~~~~~~l~--~l~~L~  522 (790)
                      +++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..       +++|+.|++++|+++ .+|..+.  .+++|+
T Consensus       440 Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~  516 (636)
T 4eco_A          440 LSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLV  516 (636)
T ss_dssp             CCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCC
T ss_pred             CcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcC
Confidence            7777777 3443 3445777788888888777 44443 332       238999999999998 6777776  899999


Q ss_pred             EEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccc
Q 036932          523 VLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNR  602 (790)
Q Consensus       523 ~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (790)
                      .|+|++|++++ +|..++.                                                             
T Consensus       517 ~L~Ls~N~l~~-ip~~~~~-------------------------------------------------------------  534 (636)
T 4eco_A          517 GIDLSYNSFSK-FPTQPLN-------------------------------------------------------------  534 (636)
T ss_dssp             EEECCSSCCSS-CCCGGGG-------------------------------------------------------------
T ss_pred             EEECCCCCCCC-cChhhhc-------------------------------------------------------------
Confidence            99999999986 7765532                                                             


Q ss_pred             eecccCcccccceEEECCCCcccccCChhhhhceecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCC
Q 036932          603 YELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEL  682 (790)
Q Consensus       603 ~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l  682 (790)
                              ++.|+.|+|++|+                 ++++|++.+.+|..++++++|+.|||++|+| +.+|..+.  
T Consensus       535 --------l~~L~~L~Ls~N~-----------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--  586 (636)
T 4eco_A          535 --------SSTLKGFGIRNQR-----------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--  586 (636)
T ss_dssp             --------CSSCCEEECCSCB-----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--
T ss_pred             --------CCCCCEEECCCCc-----------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--
Confidence                    5688899998887                 5788899999999999999999999999999 68888876  


Q ss_pred             CCCCeEecccCcceec
Q 036932          683 NFLSNFNVSFNNLSGL  698 (790)
Q Consensus       683 ~~L~~L~ls~N~l~g~  698 (790)
                      ++|+.||+++|++...
T Consensus       587 ~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          587 PNISVLDIKDNPNISI  602 (636)
T ss_dssp             TTCCEEECCSCTTCEE
T ss_pred             CcCCEEECcCCCCccc
Confidence            7899999999988753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.1e-44  Score=422.24  Aligned_cols=550  Identities=20%  Similarity=0.147  Sum_probs=342.9

Q ss_pred             CCCCCCCCccccCccceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCcc--ccCcCCCCCCEEeCCCCCCCCCcCccc
Q 036932            1 MPTSVGPKLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQG   78 (790)
Q Consensus         1 ~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~l~~l~~L~~L~Ls~n~i~~~~~~~~   78 (790)
                      +|....|..+...-+++...+-+++.+|.. +  -+++++|||++|+|+.+  .+|.++++|++|+|++|+|+++. ..+
T Consensus        20 ~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~-l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~   95 (635)
T 4g8a_A           20 IPESWEPCVEVVPNITYQCMELNFYKIPDN-L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGA   95 (635)
T ss_dssp             -----CCSEEEETTTEEECTTSCCSSCCSS-S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTT
T ss_pred             CCCCCCCccccCCCCEEECCCCCcCccCCC-C--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhH
Confidence            355566666666666777777788888742 2  24799999999999944  36999999999999999998654 367


Q ss_pred             cCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCC
Q 036932           79 VCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKL  158 (790)
Q Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  158 (790)
                      |.++++|++|+|++|++.+..+.+|.++++|++|+|++|++++..+..|+++++|++|++++|.+++...+..+.++++|
T Consensus        96 f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  175 (635)
T 4g8a_A           96 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  175 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence            88999999999999999988788899999999999999999987777899999999999999998764444567888999


Q ss_pred             cEEEccCCCCCcccccCCCCCCc----cceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEE
Q 036932          159 EVLLLSSRTNMLSVKTENFLPTF----QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEAL  234 (790)
Q Consensus       159 ~~L~L~~n~~~~~~~~~~~~~~~----~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  234 (790)
                      ++|++++|..... ....+..+.    ....++++.|.+..++........++.+++++|.....++...+..+..++..
T Consensus       176 ~~L~L~~N~l~~~-~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~  254 (635)
T 4g8a_A          176 EHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH  254 (635)
T ss_dssp             CEEECCSSCCCEE-CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred             hhhcccCcccccc-ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccc
Confidence            9999988875432 222333222    23456777777776666655556667777777765545555555566666655


Q ss_pred             eccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccc---cccchhhhcccccccccCcc
Q 036932          235 FLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFE---GYLPSSIGEMKALIFLRLPK  311 (790)
Q Consensus       235 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~  311 (790)
                      .+..+......                  .+. ......+.....+...++..+...   ...+..+..           
T Consensus       255 ~l~~~~~~~~~------------------~l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~-----------  304 (635)
T 4g8a_A          255 RLVLGEFRNEG------------------NLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNC-----------  304 (635)
T ss_dssp             EEEEECCTTSC------------------CCS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGG-----------
T ss_pred             ccccccccccc------------------ccc-cccccccccccchhhhhhhhhhhcccccchhhhhhh-----------
Confidence            54433222110                  011 011111112333333333322211   011222223           


Q ss_pred             cccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCC
Q 036932          312 NNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI  391 (790)
Q Consensus       312 n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  391 (790)
                                    +.+++.+.+.++.+....  .+.....++.|++.+|.+.+..+.   .++.|+.++++.|.+....
T Consensus       305 --------------~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~  365 (635)
T 4g8a_A          305 --------------LTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF  365 (635)
T ss_dssp             --------------GTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC
T ss_pred             --------------hccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc
Confidence                          334444444444443221  223344555555555554433221   2344555555555443211


Q ss_pred             chhhhhccCCCeEEEccCcccc--ccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcC
Q 036932          392 PHWIGNFSSDLKVLLMSKMFLK--GNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFR  469 (790)
Q Consensus       392 p~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  469 (790)
                        ....++. ++.++++.|.+.  +..+..+..                       +.+|+++++..|... ..+..+..
T Consensus       366 --~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~~-----------------------~~~L~~L~~~~~~~~-~~~~~~~~  418 (635)
T 4g8a_A          366 --SEVDLPS-LEFLDLSRNGLSFKGCCSQSDFG-----------------------TISLKYLDLSFNGVI-TMSSNFLG  418 (635)
T ss_dssp             --CCCBCTT-CCEEECCSSCCBEEEECCHHHHS-----------------------CSCCCEEECCSCSEE-EECSCCTT
T ss_pred             --ccccccc-cccchhhccccccccccccchhh-----------------------hhhhhhhhccccccc-cccccccc
Confidence              1111222 333333333221  112223333                       344455555554444 23344455


Q ss_pred             CCCCcEEeccCCcccccCc-hhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCccc-CChhHHHHHHhhc
Q 036932          470 SSNLITLDLRDNRFSGVIP-HQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS-IPSCLTIMLLWVA  547 (790)
Q Consensus       470 ~~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~-~p~~~~~~~~~~~  547 (790)
                      +++|+.++++.|+.....+ ..+..+.+++.++++.|.+.+..+..+..+++|+.|++++|++.+. +|..+        
T Consensus       419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~--------  490 (635)
T 4g8a_A          419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--------  490 (635)
T ss_dssp             CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--------
T ss_pred             cccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh--------
Confidence            5555666665555443333 2345566666666666666666666666667777777777664322 22211        


Q ss_pred             ccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCccccc
Q 036932          548 GNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGG  627 (790)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~  627 (790)
                                                                                   ..++.|+.|||++|++++.
T Consensus       491 -------------------------------------------------------------~~l~~L~~L~Ls~N~L~~l  509 (635)
T 4g8a_A          491 -------------------------------------------------------------TELRNLTFLDLSQCQLEQL  509 (635)
T ss_dssp             -------------------------------------------------------------TTCTTCCEEECTTSCCCEE
T ss_pred             -------------------------------------------------------------hhccccCEEECCCCccCCc
Confidence                                                                         1245677777777777777


Q ss_pred             CChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCC-CCCCeEecccCcceecCC
Q 036932          628 IPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEL-NFLSNFNVSFNNLSGLIP  700 (790)
Q Consensus       628 ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l-~~L~~L~ls~N~l~g~iP  700 (790)
                      +|..++.+. |++|+|++|+|++..|..|+++++|+.|||++|+|++.+|..+..+ ++|++|+|++|+++|.+.
T Consensus       510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            777888887 9999999999999999999999999999999999999999999998 689999999999999875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.5e-47  Score=441.15  Aligned_cols=363  Identities=18%  Similarity=0.228  Sum_probs=313.8

Q ss_pred             CCccccccchhhhcccccccccCcccccccc-----------------cChhhh-hcCCcCcEEEccCCcCccccccccc
Q 036932          287 DNRFEGYLPSSIGEMKALIFLRLPKNNFSGE-----------------LPAPLL-TGCISLGLLDLSGNNFYGQIFPKYM  348 (790)
Q Consensus       287 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------i~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~  348 (790)
                      .|.+++ +|..++++++|++|++++|.++|.                 +|..+. .++++|++|++++|.+.+.+|..+.
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            678888 899999999999999999999975                 887642 2799999999999999999999999


Q ss_pred             CCCCCcEEEcCCcc-ccc-ccccccCCC------CCCcEEEcccccCcCCCch--hhhhccCCCeEEEccCccccccchh
Q 036932          349 NLTQLEFLYLENNK-FSG-KIEEGLSNS------NELNELDISNNLLSGHIPH--WIGNFSSDLKVLLMSKMFLKGNIPA  418 (790)
Q Consensus       349 ~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~Ls~n~l~~~~p~--~~~~~~~~L~~L~l~~n~l~~~~~~  418 (790)
                      ++++|++|++++|+ +++ .+|..+..+      ++|++|++++|+++ .+|.  .++.++. |+.|++++|.++|.+| 
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~-L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK-LGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT-CCEEECCSCCCEEECC-
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC-CCEEeCcCCcCccchh-
Confidence            99999999999998 988 788877765      89999999999999 8888  8999988 9999999999999999 


Q ss_pred             hhccCCCCCEEecCCccccCcccccc-cccc-cceeeccCCcCccccchhhcCCC--CCcEEeccCCcccccCchhhh--
Q 036932          419 QLLNHGSLNLLSVSENCLSGPMTSSF-NLSS-LEHLYLQMNSLSGPIPIALFRSS--NLITLDLRDNRFSGVIPHQIS--  492 (790)
Q Consensus       419 ~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~-L~~L~L~~n~l~~~~p~~~~~~~--~L~~L~L~~N~l~~~~p~~~~--  492 (790)
                      .+..+++|++|++++|.++ .+|..+ .+++ |++|++++|.++ .+|..+..++  +|+.|++++|++++.+|.++.  
T Consensus       348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence            8999999999999999999 556556 8888 999999999999 7888877655  899999999999999998888  


Q ss_pred             -----cCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccc
Q 036932          493 -----ESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGS  567 (790)
Q Consensus       493 -----~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (790)
                           .+++|++|++++|++++..+..+..+++|+.|+|++|+++ .+|.......                        
T Consensus       426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~------------------------  480 (636)
T 4eco_A          426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE------------------------  480 (636)
T ss_dssp             CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET------------------------
T ss_pred             ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc------------------------
Confidence                 7889999999999999555555667999999999999999 7775432100                        


Q ss_pred             ccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhh--hce-ecceeccC
Q 036932          568 IGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIG--DLQ-IRGLNLSY  644 (790)
Q Consensus       568 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~--~l~-L~~L~Ls~  644 (790)
                                            .               .....++.|+.|+|++|+++ .+|..+.  .+. |+.|+|++
T Consensus       481 ----------------------~---------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~  522 (636)
T 4eco_A          481 ----------------------N---------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSY  522 (636)
T ss_dssp             ----------------------T---------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCS
T ss_pred             ----------------------c---------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCC
Confidence                                  0               00023558999999999999 8999887  776 99999999


Q ss_pred             CccccccCccccCCCCCCEEEc------cCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCcC
Q 036932          645 NFLSGSIPGSFSNLKWIESLDL------SHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLH  718 (790)
Q Consensus       645 N~l~g~ip~~l~~l~~L~~LdL------s~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~  718 (790)
                      |++++ +|..++++++|+.|+|      ++|++.+.+|.++..+++|++|+|++|++ +.||..- +..+....+.+|+.
T Consensus       523 N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l  599 (636)
T 4eco_A          523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPN  599 (636)
T ss_dssp             SCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTT
T ss_pred             CCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCC
Confidence            99998 9999999999999999      56889999999999999999999999999 8999762 25666667788887


Q ss_pred             CCC
Q 036932          719 LCG  721 (790)
Q Consensus       719 lcg  721 (790)
                      .|-
T Consensus       600 ~~~  602 (636)
T 4eco_A          600 ISI  602 (636)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-45  Score=418.75  Aligned_cols=459  Identities=21%  Similarity=0.208  Sum_probs=254.3

Q ss_pred             EEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCC
Q 036932           87 EFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR  166 (790)
Q Consensus        87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n  166 (790)
                      +|++++|+++ .+|..+.  ++|++|++++|++++..|..|.++++|++|++++|.+++..| ..|.++++|++|++++|
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSS
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCC
Confidence            3444444444 2333333  455555555555555555555555555555555555543222 33444444444333332


Q ss_pred             CCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCC-cCchhHhhCCCCCcEEeccCCcccccc
Q 036932          167 TNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVG-DFPTWVLRNNTKLEALFLTNNSFTGNL  245 (790)
Q Consensus       167 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~  245 (790)
                      .                         ++.+|..  .+++|++|++++|.+++ .+|..+ +++++|++|++++|.+++. 
T Consensus        80 ~-------------------------l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~~-  130 (520)
T 2z7x_B           80 K-------------------------LVKISCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEKS-  130 (520)
T ss_dssp             C-------------------------CCEEECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCGG-
T ss_pred             c-------------------------eeecCcc--ccCCccEEeccCCccccccchhhh-ccCCcceEEEecCcccchh-
Confidence            2                         2223333  45677888888888875 355544 4677777777777766542 


Q ss_pred             cCCCCCCCCC--CEEEeecCCC--CccCChhHHhhcccccEecccCCccccccchhhhccc-ccccccCcccccccccCh
Q 036932          246 QLPKTKHDFL--HHLDVSNNNL--TGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMK-ALIFLRLPKNNFSGELPA  320 (790)
Q Consensus       246 ~~~~~~~~~L--~~L~Ls~n~l--~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~i~~  320 (790)
                        .+..+++|  ++|++++|.+  .+..|..                         +..+. +...+++++|.+.+.++.
T Consensus       131 --~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-------------------------l~~l~~~~l~l~l~~n~~~~~~~~  183 (520)
T 2z7x_B          131 --SVLPIAHLNISKVLLVLGETYGEKEDPEG-------------------------LQDFNTESLHIVFPTNKEFHFILD  183 (520)
T ss_dssp             --GGGGGTTSCEEEEEEEECTTTTSSCCTTT-------------------------TTTCCEEEEEEECCSSSCCCCCCC
T ss_pred             --hccccccceeeEEEeeccccccccccccc-------------------------ccccccceEEEEeccCcchhhhhh
Confidence              23344444  5555555555  4344433                         33222 122234444444444444


Q ss_pred             hhhhcCCcCcEEEccCCc-------CcccccccccCCCCCcEEEcCCccccccccccc---CCCCCCcEEEcccccCcCC
Q 036932          321 PLLTGCISLGLLDLSGNN-------FYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGL---SNSNELNELDISNNLLSGH  390 (790)
Q Consensus       321 ~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~  390 (790)
                      ..+..+++|+.+++++|.       +.+.++ .+..+++|+.|++++|.+++..+..+   ...++|++|++++|+++|.
T Consensus       184 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  262 (520)
T 2z7x_B          184 VSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ  262 (520)
T ss_dssp             CCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred             hhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence            333444444444444443       222222 33344444444444443332111100   0012344444444444444


Q ss_pred             CchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCccc-ccc-cc---cccceeeccCCcCccccch
Q 036932          391 IPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMT-SSF-NL---SSLEHLYLQMNSLSGPIPI  465 (790)
Q Consensus       391 ~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~-~l---~~L~~L~L~~n~l~~~~p~  465 (790)
                      +|..+....                    ...+++|+.+++++|.+  .+| ..+ .+   .+|+.|++++|.+.+..  
T Consensus       263 ~p~~~~~~~--------------------~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--  318 (520)
T 2z7x_B          263 LDFRDFDYS--------------------GTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--  318 (520)
T ss_dssp             CCCCCCCCC--------------------SCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--
T ss_pred             cccchhhcc--------------------cccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--
Confidence            443331000                    03344444444444444  122 111 11   34566666666554221  


Q ss_pred             hhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccc--cCCccccCCCCCCEEEccCCcCcccCChhHHHHH
Q 036932          466 ALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEG--QIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIML  543 (790)
Q Consensus       466 ~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~  543 (790)
                      ....+++|++|++++|++++.+|.++..+++|++|++++|++++  .+|..+..+++|+.|++++|++++.+|....   
T Consensus       319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~---  395 (520)
T 2z7x_B          319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC---  395 (520)
T ss_dssp             CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC---
T ss_pred             chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh---
Confidence            11456667777777777776666667777777777777777765  4456677777777777777777755553210   


Q ss_pred             HhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCc
Q 036932          544 LWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQ  623 (790)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  623 (790)
                                                                                       ..++.|+.|++++|+
T Consensus       396 -----------------------------------------------------------------~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          396 -----------------------------------------------------------------SWTKSLLSLNMSSNI  410 (520)
T ss_dssp             -----------------------------------------------------------------CCCTTCCEEECCSSC
T ss_pred             -----------------------------------------------------------------ccCccCCEEECcCCC
Confidence                                                                             124577788888888


Q ss_pred             ccccCChhhhhceecceeccCCccccccCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCCeEecccCcceecCCC
Q 036932          624 LTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPR-LTELNFLSNFNVSFNNLSGLIPD  701 (790)
Q Consensus       624 l~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~-l~~l~~L~~L~ls~N~l~g~iP~  701 (790)
                      +++.+|..+. -.|+.|+|++|+++ .+|..+..+++|+.|||++|+|++ +|.. +..+++|++|++++|+++|.+|.
T Consensus       411 l~~~~~~~l~-~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          411 LTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CCGGGGGSCC-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCcchhhhhc-ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence            8777776654 23888999999998 888888899999999999999995 5554 89999999999999999998763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-44  Score=409.87  Aligned_cols=455  Identities=20%  Similarity=0.190  Sum_probs=255.4

Q ss_pred             ceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCcc--ccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCC
Q 036932           16 WLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI   93 (790)
Q Consensus        16 ~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   93 (790)
                      .+++.+++++.++.. +.  ++|++|++++|.++.+  ..|.++++|++|++++|.+++..+ ..+..+++|++|++++|
T Consensus         4 ~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             EEECTTSCCSSCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSS
T ss_pred             eEecCCCCccccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCC
Confidence            344444444444422 11  4455555555544422  234445555555555555443221 23444455555555555


Q ss_pred             cCcccCCcccCCCCCCcEEEccCCCCCC-CChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCccc
Q 036932           94 NIKGHLPDCLKNLSHLKVLDISYNQLSG-TLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSV  172 (790)
Q Consensus        94 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~  172 (790)
                      .+.. +|..  .+++|++|++++|++++ .+|..|+++++|++|++++|.+++    ..+..+++|              
T Consensus        80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L--------------  138 (520)
T 2z7x_B           80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHL--------------  138 (520)
T ss_dssp             CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTS--------------
T ss_pred             ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccc--------------
Confidence            4442 2222  44455555555555443 234444445555555555444432    123333333              


Q ss_pred             ccCCCCCCccceEEeCCCCCC---CCcchhhhCCC-CCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCc-------c
Q 036932          173 KTENFLPTFQLKVLGLPNYNL---KVIPSFLLHQY-DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNS-------F  241 (790)
Q Consensus       173 ~~~~~~~~~~L~~L~l~~n~l---~~lp~~l~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~-------l  241 (790)
                               +|+.|++++|.+   +..|..+..+. ....+++++|.+.+.++...+.++++|+.+++++|.       +
T Consensus       139 ---------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  209 (520)
T 2z7x_B          139 ---------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF  209 (520)
T ss_dssp             ---------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred             ---------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccccee
Confidence                     013333333333   22333333332 233455566666555555445555666666666554       3


Q ss_pred             cccccCCCCCCCCCCEEEeecCCCCccCChhHHh--hcccccEecccCCccccccchhh-----hcccccccccCccccc
Q 036932          242 TGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGI--ILQKLLYIDMSDNRFEGYLPSSI-----GEMKALIFLRLPKNNF  314 (790)
Q Consensus       242 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l  314 (790)
                      .+..+ .+..+++|+.|++++|.+++..+..+..  ..++|++|++++|.++|.+|..+     +.+++|+.+++++|.+
T Consensus       210 ~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~  288 (520)
T 2z7x_B          210 LSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF  288 (520)
T ss_dssp             HHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred             ecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence            33222 3344555566666555554332222211  12356666666666655555555     5555555555555555


Q ss_pred             ccccChhhhhcC---CcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCC
Q 036932          315 SGELPAPLLTGC---ISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI  391 (790)
Q Consensus       315 ~~~i~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  391 (790)
                        .+|...+..+   .+|+.|++++|.+....                          .+..+++|++|++++|++++.+
T Consensus       289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--------------------------~~~~l~~L~~L~Ls~n~l~~~~  340 (520)
T 2z7x_B          289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--------------------------CPSKISPFLHLDFSNNLLTDTV  340 (520)
T ss_dssp             --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--------------------------CCSSCCCCCEEECCSSCCCTTT
T ss_pred             --ecchhhhhcccccCceeEEEcCCCcccccc--------------------------chhhCCcccEEEeECCccChhh
Confidence              3442221121   34555555555443221                          1134455555555555555555


Q ss_pred             chhhhhccCCCeEEEccCccccc--cchhhhccCCCCCEEecCCccccCcccc-cc-cccccceeeccCCcCccccchhh
Q 036932          392 PHWIGNFSSDLKVLLMSKMFLKG--NIPAQLLNHGSLNLLSVSENCLSGPMTS-SF-NLSSLEHLYLQMNSLSGPIPIAL  467 (790)
Q Consensus       392 p~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~-~l~~L~~L~L~~n~l~~~~p~~~  467 (790)
                      |..++.++. |+.|++++|.+++  .+|..+..+++|++|++++|.+++.+|. .+ .+++|++|++++|++++.+|..+
T Consensus       341 ~~~~~~l~~-L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  419 (520)
T 2z7x_B          341 FENCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL  419 (520)
T ss_dssp             TTTCCCCSS-CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred             hhhhccCCC-CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence            555555555 5555555555554  4566777888899999999988884544 34 78899999999999988877766


Q ss_pred             cCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh
Q 036932          468 FRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS  537 (790)
Q Consensus       468 ~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~  537 (790)
                      .  ++|+.|++++|+++ .+|.++..+++|++|++++|++++..+..+..+++|+.|++++|++++..+.
T Consensus       420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            4  79999999999999 7888888999999999999999954444489999999999999999987663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.5e-44  Score=422.03  Aligned_cols=355  Identities=19%  Similarity=0.267  Sum_probs=263.3

Q ss_pred             CCCCccCChhHHhhcccccEecccCCcccc-----------------ccchhhh--cccccccccCcccccccccChhhh
Q 036932          263 NNLTGKLPEDMGIILQKLLYIDMSDNRFEG-----------------YLPSSIG--EMKALIFLRLPKNNFSGELPAPLL  323 (790)
Q Consensus       263 n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~n~l~~~i~~~~~  323 (790)
                      |+++| +|..+. .+++|++|++++|.+++                 .+|..++  ++++|++|+|++|.+.+.+|.. +
T Consensus       435 N~L~~-IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l  511 (876)
T 4ecn_A          435 NRITF-ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-L  511 (876)
T ss_dssp             CEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-G
T ss_pred             Ccccc-hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-H
Confidence            56664 676654 47777777777777776                 3677766  7777777777777777777754 4


Q ss_pred             hcCCcCcEEEccCCc-Ccc-cccccccCC-------CCCcEEEcCCccccccccc--ccCCCCCCcEEEcccccCcCCCc
Q 036932          324 TGCISLGLLDLSGNN-FYG-QIFPKYMNL-------TQLEFLYLENNKFSGKIEE--GLSNSNELNELDISNNLLSGHIP  392 (790)
Q Consensus       324 ~~l~~L~~L~L~~n~-l~~-~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p  392 (790)
                      .++++|+.|++++|+ +++ .+|..+..+       ++|++|++++|.++ .+|.  .+..+++|+.|++++|+++ .+|
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            577777777777776 766 566544433       47888888888887 6676  7777888888888888877 677


Q ss_pred             hhhhhccCCCeEEEccCccccccchhhhccCCC-CCEEecCCccccCcccccc-cc--cccceeeccCCcCccccchh--
Q 036932          393 HWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGS-LNLLSVSENCLSGPMTSSF-NL--SSLEHLYLQMNSLSGPIPIA--  466 (790)
Q Consensus       393 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~-~l--~~L~~L~L~~n~l~~~~p~~--  466 (790)
                       .+..++. |+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+ .+  ++|+.|++++|++++.+|..  
T Consensus       590 -~~~~L~~-L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~  665 (876)
T 4ecn_A          590 -AFGTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC  665 (876)
T ss_dssp             -CCCTTSE-ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred             -hhcCCCc-ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence             6777776 888888888877 77777777877 888888888887 455554 33  34888888888887765532  


Q ss_pred             -hc--CCCCCcEEeccCCcccccCchh-hhcCccccEEeccCccccccCCccccCC--------CCCCEEEccCCcCccc
Q 036932          467 -LF--RSSNLITLDLRDNRFSGVIPHQ-ISESLTLRFLLLRGNYLEGQIPNQLCQL--------RRLGVLDLSHNRISGS  534 (790)
Q Consensus       467 -~~--~~~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~l--------~~L~~L~Ls~N~l~g~  534 (790)
                       +.  .+++|+.|++++|+++ .+|.. +..+++|+.|+|++|+++ .+|..+...        ++|+.|+|++|+++ .
T Consensus       666 ~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~  742 (876)
T 4ecn_A          666 SMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-S  742 (876)
T ss_dssp             CTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-C
T ss_pred             hhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-c
Confidence             22  3457888888888888 44544 457788888888888888 555544332        38888888888888 6


Q ss_pred             CChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccc
Q 036932          535 IPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYM  614 (790)
Q Consensus       535 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  614 (790)
                      +|..+..                                                                   ..++.|
T Consensus       743 lp~~l~~-------------------------------------------------------------------~~l~~L  755 (876)
T 4ecn_A          743 LSDDFRA-------------------------------------------------------------------TTLPYL  755 (876)
T ss_dssp             CCGGGST-------------------------------------------------------------------TTCTTC
T ss_pred             chHHhhh-------------------------------------------------------------------ccCCCc
Confidence            7754320                                                                   125678


Q ss_pred             eEEECCCCcccccCChhhhhce-ecceeccC------CccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCe
Q 036932          615 VGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSY------NFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSN  687 (790)
Q Consensus       615 ~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~------N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~  687 (790)
                      +.|+|++|++++ +|..++.+. |+.|+|++      |++.+.+|..|+++++|+.|||++|+| +.+|..+.  ++|+.
T Consensus       756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~  831 (876)
T 4ecn_A          756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYI  831 (876)
T ss_dssp             CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCE
T ss_pred             CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCE
Confidence            888888888886 788888777 88888866      889999999999999999999999999 78998876  69999


Q ss_pred             EecccCcceecCC
Q 036932          688 FNVSFNNLSGLIP  700 (790)
Q Consensus       688 L~ls~N~l~g~iP  700 (790)
                      |||++|++...-+
T Consensus       832 LdLs~N~l~~i~~  844 (876)
T 4ecn_A          832 LDIADNPNISIDV  844 (876)
T ss_dssp             EECCSCTTCEEEC
T ss_pred             EECCCCCCCccCh
Confidence            9999999875443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.1e-44  Score=422.71  Aligned_cols=365  Identities=18%  Similarity=0.230  Sum_probs=244.4

Q ss_pred             ccEecccC--CccccccchhhhcccccccccCccccccc-----------------ccChhh-hhcCCcCcEEEccCCcC
Q 036932          280 LLYIDMSD--NRFEGYLPSSIGEMKALIFLRLPKNNFSG-----------------ELPAPL-LTGCISLGLLDLSGNNF  339 (790)
Q Consensus       280 L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~i~~~~-~~~l~~L~~L~L~~n~l  339 (790)
                      ++.+.+..  |.+++ +|..++++++|++|+|++|+++|                 .+|..+ |.++++|++|+|++|.+
T Consensus       425 l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l  503 (876)
T 4ecn_A          425 LKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN  503 (876)
T ss_dssp             CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT
T ss_pred             hhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC
Confidence            33444443  67776 67777777777777777777776                 266654 34677777777777777


Q ss_pred             cccccccccCCCCCcEEEcCCcc-ccc-ccccccCC-------CCCCcEEEcccccCcCCCch--hhhhccCCCeEEEcc
Q 036932          340 YGQIFPKYMNLTQLEFLYLENNK-FSG-KIEEGLSN-------SNELNELDISNNLLSGHIPH--WIGNFSSDLKVLLMS  408 (790)
Q Consensus       340 ~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------l~~L~~L~Ls~n~l~~~~p~--~~~~~~~~L~~L~l~  408 (790)
                      .+.+|..+.++++|++|++++|+ +++ .+|..+..       +++|+.|++++|.++ .+|.  .+..++. |+.|+++
T Consensus       504 ~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~-L~~L~Ls  581 (876)
T 4ecn_A          504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK-LGLLDCV  581 (876)
T ss_dssp             CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT-CCEEECT
T ss_pred             CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC-CCEEECC
Confidence            77777777777777777777776 766 56654443       347777777777777 6776  7777776 7777777


Q ss_pred             CccccccchhhhccCCCCCEEecCCccccCcccccc-cccc-cceeeccCCcCccccchhhcCCCC--CcEEeccCCccc
Q 036932          409 KMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSS-LEHLYLQMNSLSGPIPIALFRSSN--LITLDLRDNRFS  484 (790)
Q Consensus       409 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~-L~~L~L~~n~l~~~~p~~~~~~~~--L~~L~L~~N~l~  484 (790)
                      +|.++ .+| .+..+++|+.|++++|.++ .+|..+ .+++ |+.|++++|+++ .+|..+..++.  |+.|++++|+++
T Consensus       582 ~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~  657 (876)
T 4ecn_A          582 HNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG  657 (876)
T ss_dssp             TSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred             CCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCC
Confidence            77777 666 6777777777777777777 444444 6666 777777777777 66766655543  777777777777


Q ss_pred             ccCchhh---h--cCccccEEeccCccccccCCcc-ccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccc
Q 036932          485 GVIPHQI---S--ESLTLRFLLLRGNYLEGQIPNQ-LCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQ  558 (790)
Q Consensus       485 ~~~p~~~---~--~l~~L~~L~L~~N~l~~~~~~~-l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~  558 (790)
                      +.+|...   .  .+++|+.|++++|+++ .+|.. +..+++|+.|+|++|+++ .+|..+....               
T Consensus       658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~---------------  720 (876)
T 4ecn_A          658 SEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK---------------  720 (876)
T ss_dssp             TTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT---------------
T ss_pred             CccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc---------------
Confidence            6555322   2  2346777777777777 44444 346777777777777777 6665432100               


Q ss_pred             cccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhh--hce
Q 036932          559 FFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIG--DLQ  636 (790)
Q Consensus       559 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~--~l~  636 (790)
                                                     .               .....++.|+.|+|++|+++ .+|..+.  .+.
T Consensus       721 -------------------------------~---------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~  753 (876)
T 4ecn_A          721 -------------------------------D---------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP  753 (876)
T ss_dssp             -------------------------------T---------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT
T ss_pred             -------------------------------c---------------ccccccCCccEEECCCCCCc-cchHHhhhccCC
Confidence                                           0               00012456777777777777 6777765  555


Q ss_pred             -ecceeccCCccccccCccccCCCCCCEEEccC------CcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcC
Q 036932          637 -IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSH------NRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFD  709 (790)
Q Consensus       637 -L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~------N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~  709 (790)
                       |+.|+|++|+|++ +|..++++++|+.|+|++      |++.+.+|..+..+++|+.|+|++|++ +.||.. .+..+.
T Consensus       754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~  830 (876)
T 4ecn_A          754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLY  830 (876)
T ss_dssp             TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSC
T ss_pred             CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCC
Confidence             7777777777776 677777777777777765      667777777777777777777777777 677765 223444


Q ss_pred             cccccCCcC
Q 036932          710 ESSYRGNLH  718 (790)
Q Consensus       710 ~~~~~gn~~  718 (790)
                      .....+|+.
T Consensus       831 ~LdLs~N~l  839 (876)
T 4ecn_A          831 ILDIADNPN  839 (876)
T ss_dssp             EEECCSCTT
T ss_pred             EEECCCCCC
Confidence            444555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.1e-41  Score=396.99  Aligned_cols=510  Identities=19%  Similarity=0.174  Sum_probs=400.1

Q ss_pred             cCccceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCccc--cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEe
Q 036932           12 RSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI   89 (790)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~   89 (790)
                      .+++.|++++|+|+.+++.+|+++++|++|||++|+|+.++  +|.++++|++|+|++|++++.+ ...|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCCCCCEEE
Confidence            35789999999999999999999999999999999999443  6999999999999999998654 46799999999999


Q ss_pred             cCCCcCcccCCcccCCCCCCcEEEccCCCCCCC-ChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCC----cEEEcc
Q 036932           90 LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGT-LPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKL----EVLLLS  164 (790)
Q Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L----~~L~L~  164 (790)
                      +++|++.+..+..|+++++|++|++++|++++. .|..++.+++|++|++++|.+++.. ...+..+.++    ..++++
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHHHTCTTCCCEEECT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc-cccccchhhhhhhhhhhhcc
Confidence            999999988888899999999999999999764 5788999999999999999998543 3455554443    467888


Q ss_pred             CCCCCcccccCCCCCCccceEEeCCCCCC--CCcchhhhCCCCCCEEEccCCCCCC-----cCchhHhhCCCCCcEEecc
Q 036932          165 SRTNMLSVKTENFLPTFQLKVLGLPNYNL--KVIPSFLLHQYDLKLLDLSGNNLVG-----DFPTWVLRNNTKLEALFLT  237 (790)
Q Consensus       165 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~lp~~l~~l~~L~~L~Ls~n~l~~-----~ip~~~~~~l~~L~~L~L~  237 (790)
                      .|... .++. .......++.+++.+|..  ...+..+..+..++...+..+....     ......+.....+....+.
T Consensus       210 ~n~l~-~i~~-~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~  287 (635)
T 4g8a_A          210 LNPMN-FIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  287 (635)
T ss_dssp             TCCCC-EECT-TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred             cCccc-ccCc-ccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence            77643 2222 333445677888887765  2344566777777777665432221     1111222344455555554


Q ss_pred             CCccccc---ccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCccccc
Q 036932          238 NNSFTGN---LQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF  314 (790)
Q Consensus       238 ~n~l~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  314 (790)
                      .+.....   ....+.....++.+++.++.+. .++..  .....++.|++.+|.+.+..+.   .+..|+.+++..|..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~  361 (635)
T 4g8a_A          288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKDF--SYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKG  361 (635)
T ss_dssp             EECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGGG--GSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCS
T ss_pred             hhhhcccccchhhhhhhhcccccccccccccc-ccccc--ccchhhhhhhcccccccCcCcc---cchhhhhcccccccC
Confidence            4332211   1123446678899999998887 44432  2367899999999988754443   456788888888887


Q ss_pred             ccccChhhhhcCCcCcEEEccCCcCcc--cccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCc
Q 036932          315 SGELPAPLLTGCISLGLLDLSGNNFYG--QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIP  392 (790)
Q Consensus       315 ~~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  392 (790)
                      .. .+.  ...+++|+.++++.|.+..  ..+..+..+.+|+.+++..+.+.. .+..+..+++|+.++++.+......+
T Consensus       362 ~~-~~~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~  437 (635)
T 4g8a_A          362 GN-AFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE  437 (635)
T ss_dssp             CC-BCC--CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred             CC-Ccc--cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccc
Confidence            63 332  2468899999999998864  344556678899999999998874 45667889999999999888776555


Q ss_pred             h-hhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCcccc-Ccccccc-cccccceeeccCCcCccccchhhcC
Q 036932          393 H-WIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLS-GPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFR  469 (790)
Q Consensus       393 ~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~  469 (790)
                      . .+..+.. ++.++++.|.+.+..+..+..++.++.|++++|.+. +..|..+ .+++|++|+|++|++++..|..|.+
T Consensus       438 ~~~~~~l~~-l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~  516 (635)
T 4g8a_A          438 FSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  516 (635)
T ss_dssp             SCTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             ccccccccc-cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC
Confidence            3 4556666 999999999999999999999999999999999754 4566667 8899999999999999888999999


Q ss_pred             CCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCC-CCCCEEEccCCcCcccCC
Q 036932          470 SSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQL-RRLGVLDLSHNRISGSIP  536 (790)
Q Consensus       470 ~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l-~~L~~L~Ls~N~l~g~~p  536 (790)
                      +++|++|+|++|++++..|..+..+++|++|++++|++++..|..+..+ ++|+.|+|++|++++...
T Consensus       517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            9999999999999999999999999999999999999999999999988 689999999999987554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.1e-42  Score=391.93  Aligned_cols=457  Identities=18%  Similarity=0.186  Sum_probs=315.6

Q ss_pred             CCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcc-hhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcE
Q 036932          155 HSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP-SFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEA  233 (790)
Q Consensus       155 l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  233 (790)
                      +...++++++++.... ++.. +.  +++++|++++|.+..++ ..+..+++|++|++++|.+++..|. .+.++++|++
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~  104 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKD-LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEY  104 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTT-SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCE
T ss_pred             cCCCcEEEcCCCCCcc-CCCC-CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCE
Confidence            3344677777665432 3321 11  56777777777775554 4666677777777777777633333 3346677777


Q ss_pred             EeccCCcccccccCCCCCCCCCCEEEeecCCCCc-cCChhHHhhcccccEecccCCccccccchhhhccccc--ccccCc
Q 036932          234 LFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTG-KLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKAL--IFLRLP  310 (790)
Q Consensus       234 L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~Ls  310 (790)
                      |++++|.++...   ...+++|++|++++|++++ .+|..+ ..+++|++|++++|.+++.   .+..+++|  ++|+++
T Consensus       105 L~Ls~N~l~~lp---~~~l~~L~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          105 LDVSHNRLQNIS---CCPMASLRHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD  177 (562)
T ss_dssp             EECTTSCCCEEC---SCCCTTCSEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred             EECCCCcCCccC---ccccccCCEEECCCCCccccCchHhh-cccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence            777777766432   2256677777777777763 223333 3467777777777776642   33444444  777777


Q ss_pred             cccc--ccccChhhhhcCC-cCcEEEccCCcCcccccc-cccCCCCCcEEEcCCcc-----cccccccccCCCCCCcEEE
Q 036932          311 KNNF--SGELPAPLLTGCI-SLGLLDLSGNNFYGQIFP-KYMNLTQLEFLYLENNK-----FSGKIEEGLSNSNELNELD  381 (790)
Q Consensus       311 ~n~l--~~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~  381 (790)
                      +|.+  .+..|..+ ..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.     +.+ ....+..++.|+.++
T Consensus       178 ~n~l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~  255 (562)
T 3a79_B          178 LVSYHIKGGETESL-QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVT  255 (562)
T ss_dssp             ESSCCCCSSSCCEE-EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEE
T ss_pred             cccccccccCcccc-cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEE
Confidence            7766  54444332 2222 111446666666554433 34466777788887774     221 223456677777777


Q ss_pred             cccccCcCCC----chhhhhccCCCeEEEccCccccccchhhh-----ccCCCCCEEecCCccccCcccc-cc----ccc
Q 036932          382 ISNNLLSGHI----PHWIGNFSSDLKVLLMSKMFLKGNIPAQL-----LNHGSLNLLSVSENCLSGPMTS-SF----NLS  447 (790)
Q Consensus       382 Ls~n~l~~~~----p~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~~-~~----~l~  447 (790)
                      ++++.+.+..    +..+. ... |++|++++|.++|.+|..+     ..++.|+.+++..+.+  .+|. .+    ...
T Consensus       256 L~~~~l~~~~~~~~~~~~~-~~~-L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~  331 (562)
T 3a79_B          256 LQHIETTWKCSVKLFQFFW-PRP-VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEM  331 (562)
T ss_dssp             EEEEEECHHHHHHHHHHHT-TSS-EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTC
T ss_pred             ecCCcCcHHHHHHHHHhhh-ccc-ccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccC
Confidence            7777665421    22222 224 9999999999998888877     5666666666666666  2332 11    235


Q ss_pred             ccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccc--cCCccccCCCCCCEEE
Q 036932          448 SLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEG--QIPNQLCQLRRLGVLD  525 (790)
Q Consensus       448 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~  525 (790)
                      +|++|++++|.+....  ....+++|++|++++|++++.+|.++..+++|++|++++|++++  .+|..+..+++|+.|+
T Consensus       332 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  409 (562)
T 3a79_B          332 NIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD  409 (562)
T ss_dssp             CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred             cceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence            7999999999986322  12678999999999999999899999999999999999999997  3457789999999999


Q ss_pred             ccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceec
Q 036932          526 LSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYEL  605 (790)
Q Consensus       526 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  605 (790)
                      +++|++++.+|....                                                                 
T Consensus       410 l~~N~l~~~~~~~~~-----------------------------------------------------------------  424 (562)
T 3a79_B          410 VSLNSLNSHAYDRTC-----------------------------------------------------------------  424 (562)
T ss_dssp             CTTSCCBSCCSSCCC-----------------------------------------------------------------
T ss_pred             CCCCcCCCccChhhh-----------------------------------------------------------------
Confidence            999999976774310                                                                 


Q ss_pred             ccCcccccceEEECCCCcccccCChhhhhceecceeccCCccccccCccccCCCCCCEEEccCCcccccCCcc-ccCCCC
Q 036932          606 YNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPR-LTELNF  684 (790)
Q Consensus       606 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~-l~~l~~  684 (790)
                         ..++.|+.|++++|++++.+|..+. -.|+.|+|++|+++ .+|..+.++++|+.|||++|+|++ +|.. +..+++
T Consensus       425 ---~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~  498 (562)
T 3a79_B          425 ---AWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTS  498 (562)
T ss_dssp             ---CCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTT
T ss_pred             ---cCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCC
Confidence               2257899999999999998887765 23999999999999 788888899999999999999995 5555 999999


Q ss_pred             CCeEecccCcceecCCCC
Q 036932          685 LSNFNVSFNNLSGLIPDK  702 (790)
Q Consensus       685 L~~L~ls~N~l~g~iP~~  702 (790)
                      |++|++++|+++|.+|..
T Consensus       499 L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          499 LQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             CCCEECCSCCBCCCHHHH
T ss_pred             CCEEEecCCCcCCCcchH
Confidence            999999999999988743

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.3e-41  Score=387.15  Aligned_cols=464  Identities=20%  Similarity=0.171  Sum_probs=299.7

Q ss_pred             CCCCCCEEEcCCCCCCccc-cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEE
Q 036932           34 NLTNLKILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVL  112 (790)
Q Consensus        34 ~l~~L~~L~Ls~n~i~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  112 (790)
                      .+...+++|+++|+++.++ .+.  ++|++|++++|.+++.. ...+..+++|++|++++|.+.+..|.+|+++++|++|
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            3445588999999888444 344  88999999999988654 3578889999999999999988888889999999999


Q ss_pred             EccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccc--eEEeCCC
Q 036932          113 DISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQL--KVLGLPN  190 (790)
Q Consensus       113 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L--~~L~l~~  190 (790)
                      ||++|+++ .+|..  .+++|++|++++|.+++.-.+..+.++++|++|++++|....    ..+..+.+|  +.|++++
T Consensus       106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSCEEEEEEEE
T ss_pred             ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----CchhhhhhceeeEEEeec
Confidence            99999988 45554  789999999999998752223578888888888888876432    223333333  6666666


Q ss_pred             CCC--C-CcchhhhCCC-CCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCC
Q 036932          191 YNL--K-VIPSFLLHQY-DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLT  266 (790)
Q Consensus       191 n~l--~-~lp~~l~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~  266 (790)
                      |.+  . ..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|.....                   .+.
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------------~l~  239 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------------------RLM  239 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-------------------HHH
T ss_pred             ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-------------------hHH
Confidence            555  2 2333333322 1113455555555444444444444555555554421000                   001


Q ss_pred             ccCChhHHhhcccccEecccCCcccccc----chhhhcccccccccCcccccccccChhhh----hcCCcCcEEEccCCc
Q 036932          267 GKLPEDMGIILQKLLYIDMSDNRFEGYL----PSSIGEMKALIFLRLPKNNFSGELPAPLL----TGCISLGLLDLSGNN  338 (790)
Q Consensus       267 ~~~p~~~~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~----~~l~~L~~L~L~~n~  338 (790)
                      +.+ .. +..+++|+.++++++.+.+..    +..+ ..++|++|++++|.+.|.+|..++    ..++.|+.+++..+.
T Consensus       240 ~~~-~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~  316 (562)
T 3a79_B          240 TFL-SE-LTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV  316 (562)
T ss_dssp             HHH-HH-HHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred             HHH-HH-HhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence            000 11 112344444444444433211    1111 123555555555555555554432    233444444444444


Q ss_pred             Cccccc-cccc---CCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccc
Q 036932          339 FYGQIF-PKYM---NLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG  414 (790)
Q Consensus       339 l~~~~~-~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~  414 (790)
                      +  .+| ..+.   ...+|++|++++|.+....  ....+++|++|++++|++++.+|..+..++. |+.|++++|++++
T Consensus       317 ~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~  391 (562)
T 3a79_B          317 F--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR-LQTLILQRNGLKN  391 (562)
T ss_dssp             C--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSS-CCEEECCSSCCCB
T ss_pred             e--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCC-CCEEECCCCCcCC
Confidence            4  122 1111   1245666666666654221  1245666777777777777666666666666 7777777777765


Q ss_pred             --cchhhhccCCCCCEEecCCccccCcccc-cc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchh
Q 036932          415 --NIPAQLLNHGSLNLLSVSENCLSGPMTS-SF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQ  490 (790)
Q Consensus       415 --~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~  490 (790)
                        .+|..+..+++|++|++++|.+++.+|. .+ .+++|++|++++|++++.+|..+.  ++|++|++++|+++ .+|..
T Consensus       392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~  468 (562)
T 3a79_B          392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKD  468 (562)
T ss_dssp             TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTT
T ss_pred             cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChh
Confidence              3456788888999999999999984544 45 789999999999999887776654  79999999999998 67777


Q ss_pred             hhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh
Q 036932          491 ISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS  537 (790)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~  537 (790)
                      +..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|.
T Consensus       469 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            77999999999999999954444489999999999999999987774

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.1e-41  Score=374.54  Aligned_cols=375  Identities=21%  Similarity=0.225  Sum_probs=310.3

Q ss_pred             CEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEcc
Q 036932          256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLS  335 (790)
Q Consensus       256 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~  335 (790)
                      +.++.+++.++ .+|. +   .++|++|++++|.+++..|..++++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            35667777776 7776 2   36788888888888877788888888888888888888777777777788888888888


Q ss_pred             CCcCcccccccccCCCCCcEEEcCCcccccccccc--cCCCCCCcEEEcccccCcCCCchh-hhhccCCCeEEEccCccc
Q 036932          336 GNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEG--LSNSNELNELDISNNLLSGHIPHW-IGNFSSDLKVLLMSKMFL  412 (790)
Q Consensus       336 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~~~L~~L~l~~n~l  412 (790)
                      +|.+.+..|..+.++++|++|++++|.+++..+..  +..+++|++|++++|++++..|.. +..++. |++|++++|.+
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l  166 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKV  166 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT-CCEEECTTCCB
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc-ccEEeCCCCcc
Confidence            88888877888888888888888888887654444  788888888888888888777765 677776 88888888888


Q ss_pred             cccchhhhccC--CCCCEEecCCccccCccccc---------ccccccceeeccCCcCccccchhhcCC---CCCcEEec
Q 036932          413 KGNIPAQLLNH--GSLNLLSVSENCLSGPMTSS---------FNLSSLEHLYLQMNSLSGPIPIALFRS---SNLITLDL  478 (790)
Q Consensus       413 ~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---------~~l~~L~~L~L~~n~l~~~~p~~~~~~---~~L~~L~L  478 (790)
                      ++..+..+..+  .+|+.|++++|.+.+..+..         +.+++|++|++++|++++..|..+...   ++|+.|++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            88888777765  67888999999888765443         245789999999999998888777654   88999999


Q ss_pred             cCCccccc----------Cchhhhc--CccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhh
Q 036932          479 RDNRFSGV----------IPHQISE--SLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWV  546 (790)
Q Consensus       479 ~~N~l~~~----------~p~~~~~--l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~  546 (790)
                      ++|.+.+.          .+..+..  .++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..+.      
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------  320 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW------  320 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT------
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc------
Confidence            98865542          2222332  36899999999999999999999999999999999999976665442      


Q ss_pred             cccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccc
Q 036932          547 AGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTG  626 (790)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g  626 (790)
                                                                                     .++.|+.|+|++|++++
T Consensus       321 ---------------------------------------------------------------~l~~L~~L~Ls~N~l~~  337 (455)
T 3v47_A          321 ---------------------------------------------------------------GLTHLLKLNLSQNFLGS  337 (455)
T ss_dssp             ---------------------------------------------------------------TCTTCCEEECCSSCCCE
T ss_pred             ---------------------------------------------------------------CcccCCEEECCCCccCC
Confidence                                                                           25689999999999998


Q ss_pred             cCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcC
Q 036932          627 GIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQF  705 (790)
Q Consensus       627 ~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  705 (790)
                      ..|..++.+. |+.|+|++|++++..|..|+++++|+.|||++|+|++..+..+..+++|++|++++|+++|.+|.-..+
T Consensus       338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            8899999887 999999999999999999999999999999999999888888899999999999999999999965333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.4e-41  Score=370.46  Aligned_cols=418  Identities=25%  Similarity=0.317  Sum_probs=170.3

Q ss_pred             CCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEE
Q 036932           83 KNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLL  162 (790)
Q Consensus        83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~  162 (790)
                      .+|++|++++|.+ +.+|++++++++|++|++++|++.+.+|..++++++|+.+++..|..                   
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-------------------   70 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-------------------   70 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------------
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------------
Confidence            4555555555555 45555555555555555555555555555555555444443332210                   


Q ss_pred             ccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCccc
Q 036932          163 LSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFT  242 (790)
Q Consensus       163 L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~  242 (790)
                                        .++++|++++|.++.+|..   .++|++|++++|.+++ +|.    ..++|++|++++|.++
T Consensus        71 ------------------~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~  124 (454)
T 1jl5_A           71 ------------------RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLK  124 (454)
T ss_dssp             ------------------HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCS
T ss_pred             ------------------cCCCEEEecCCccccCCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccC
Confidence                              2344555555555555542   2467777777777764 553    2356666666666665


Q ss_pred             ccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhh
Q 036932          243 GNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL  322 (790)
Q Consensus       243 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~  322 (790)
                      +....    .++|++|++++|+++ .+|.  +..+++|++|++++|++++ +|..+   .+|++|++++|+++ .+|   
T Consensus       125 ~l~~~----~~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~-~l~---  189 (454)
T 1jl5_A          125 ALSDL----PPLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLE-ELP---  189 (454)
T ss_dssp             CCCSC----CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCS-SCC---
T ss_pred             cccCC----CCCCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCC-cCc---
Confidence            43211    134555555555555 2442  2234555555555555542 33221   24444444444444 233   


Q ss_pred             hhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCC
Q 036932          323 LTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDL  402 (790)
Q Consensus       323 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L  402 (790)
                                             .+.++++|++|++++|.+++ +|..   .++|++|++++|.++ .+|. ++.++. |
T Consensus       190 -----------------------~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~-L  239 (454)
T 1jl5_A          190 -----------------------ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPF-L  239 (454)
T ss_dssp             -----------------------CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTT-C
T ss_pred             -----------------------cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCC-C
Confidence                                   34444444444444444442 2211   124444444444444 3332 333333 4


Q ss_pred             eEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCc
Q 036932          403 KVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNR  482 (790)
Q Consensus       403 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~  482 (790)
                      +.|++++|++++ +|..   .++|++|++++|.+++. |..  +++|++|++++|++++ +|..   .++|+.|++++|+
T Consensus       240 ~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l-~~~--~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~  308 (454)
T 1jl5_A          240 TTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL-PEL--PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNE  308 (454)
T ss_dssp             CEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC-CCC--CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSC
T ss_pred             CEEECCCCcCCc-cccc---ccccCEEECCCCccccc-Ccc--cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCc
Confidence            444444444332 2211   23455555555555542 211  2456666666666654 2211   1456666666666


Q ss_pred             ccccCchhhhcC-ccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccc
Q 036932          483 FSGVIPHQISES-LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFS  561 (790)
Q Consensus       483 l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  561 (790)
                      +++. +    .+ ++|++|++++|++++ +|..   +++|+.|++++|+++ .+|.                        
T Consensus       309 l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~------------------------  354 (454)
T 1jl5_A          309 IRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE------------------------  354 (454)
T ss_dssp             CSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC------------------------
T ss_pred             CCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc------------------------
Confidence            6542 1    12 356666666666664 3432   456666666666665 3442                        


Q ss_pred             ccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccc--cCChhhhhceecc
Q 036932          562 AIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTG--GIPSEIGDLQIRG  639 (790)
Q Consensus       562 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~l~L~~  639 (790)
                                                                      .++.|+.||+++|++++  .+|..++.     
T Consensus       355 ------------------------------------------------~l~~L~~L~L~~N~l~~l~~ip~~l~~-----  381 (454)
T 1jl5_A          355 ------------------------------------------------LPQNLKQLHVEYNPLREFPDIPESVED-----  381 (454)
T ss_dssp             ------------------------------------------------CCTTCCEEECCSSCCSSCCCCCTTCCE-----
T ss_pred             ------------------------------------------------hhhhccEEECCCCCCCcCCCChHHHHh-----
Confidence                                                            02356666666666666  55555433     


Q ss_pred             eeccCCccccccCccccCCCCCCEEEccCCcccc--cCCccccCCCCCCeEecccCcceecCC
Q 036932          640 LNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSG--QVPPRLTELNFLSNFNVSFNNLSGLIP  700 (790)
Q Consensus       640 L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg--~ip~~l~~l~~L~~L~ls~N~l~g~iP  700 (790)
                        |+.|++.|.+|..   +++|+.||+++|+++|  .+|.+      ++.|.+++|.+.+.+|
T Consensus       382 --L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~  433 (454)
T 1jl5_A          382 --LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYE  433 (454)
T ss_dssp             --EECCC--------------------------------------------------------
T ss_pred             --hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccc
Confidence              3445666666653   4566777777777766  56644      3444556666665554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.7e-39  Score=356.50  Aligned_cols=364  Identities=21%  Similarity=0.222  Sum_probs=244.0

Q ss_pred             CcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCc
Q 036932          231 LEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLP  310 (790)
Q Consensus       231 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  310 (790)
                      |++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+++..|..++++++|++|+++
T Consensus        32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  111 (455)
T 3v47_A           32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT  111 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred             cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence            33444444433333333344445555555555555445544444456666666666666666666666666666666666


Q ss_pred             ccccccccCh-hhhhcCCcCcEEEccCCcCccccccc-ccCCCCCcEEEcCCcccccccccccCCC--CCCcEEEccccc
Q 036932          311 KNNFSGELPA-PLLTGCISLGLLDLSGNNFYGQIFPK-YMNLTQLEFLYLENNKFSGKIEEGLSNS--NELNELDISNNL  386 (790)
Q Consensus       311 ~n~l~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~  386 (790)
                      +|.+++.++. ..+..+++|++|++++|.+.+..|.. +.++++|++|++++|.+++..+..+..+  .+|+.|++++|.
T Consensus       112 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~  191 (455)
T 3v47_A          112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT  191 (455)
T ss_dssp             TSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred             CCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc
Confidence            6666643332 22455666666666666666655554 5666667777777776666666555544  566677777777


Q ss_pred             CcCCCchhhh--------hccCCCeEEEccCccccccchhhhccC---CCCCEEecCCccccCcccccccccccceeecc
Q 036932          387 LSGHIPHWIG--------NFSSDLKVLLMSKMFLKGNIPAQLLNH---GSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQ  455 (790)
Q Consensus       387 l~~~~p~~~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~  455 (790)
                      +.+..+.++.        ..+. |+.|++++|.+++..|..+...   ++|+.|++++|...+....             
T Consensus       192 l~~~~~~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------  257 (455)
T 3v47_A          192 LQDMNEYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-------------  257 (455)
T ss_dssp             CTTCSTTCTTHHHHCCTTTTCE-EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-------------
T ss_pred             ccccchhhccccccccccccce-eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-------------
Confidence            6644333221        2233 6666666666666666555443   5666777766655443211             


Q ss_pred             CCcCccccchhhc--CCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcc
Q 036932          456 MNSLSGPIPIALF--RSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISG  533 (790)
Q Consensus       456 ~n~l~~~~p~~~~--~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g  533 (790)
                      .+.+.+..+..+.  ..++|+.|++++|++++..|.++..+++|++|++++|++++..|..+..+++|+.|++++|++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  337 (455)
T 3v47_A          258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS  337 (455)
T ss_dssp             CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence            1122212222222  23688999999999998888889999999999999999998888889999999999999999875


Q ss_pred             cCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCccccc
Q 036932          534 SIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKY  613 (790)
Q Consensus       534 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  613 (790)
                      ..|..+.                                                                     .++.
T Consensus       338 ~~~~~~~---------------------------------------------------------------------~l~~  348 (455)
T 3v47_A          338 IDSRMFE---------------------------------------------------------------------NLDK  348 (455)
T ss_dssp             ECGGGGT---------------------------------------------------------------------TCTT
T ss_pred             cChhHhc---------------------------------------------------------------------Cccc
Confidence            5554432                                                                     2568


Q ss_pred             ceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCc
Q 036932          614 MVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPP  677 (790)
Q Consensus       614 L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~  677 (790)
                      |+.|||++|++++..|..++.+. |+.|+|++|++++..+..++.+++|+.||+++|.+++.+|.
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            99999999999988898898887 99999999999987778889999999999999999998873

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.7e-40  Score=361.83  Aligned_cols=389  Identities=25%  Similarity=0.273  Sum_probs=214.4

Q ss_pred             CccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCC-------------CcEEeccCCccccccc
Q 036932          180 TFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTK-------------LEALFLTNNSFTGNLQ  246 (790)
Q Consensus       180 ~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~-------------L~~L~L~~n~l~~~~~  246 (790)
                      ...|++|++++|.++.+|..++++++|++|++++|.++|.+|..+. ++++             +++|++++|.+++...
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~   88 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSLPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence            4577888888888888999899999999999999998888887653 4444             4777888877776432


Q ss_pred             CCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcC
Q 036932          247 LPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGC  326 (790)
Q Consensus       247 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l  326 (790)
                          ..++|++|++++|.+++ +|..    .++|++|++++|.+++ +|..   .++|++|++++|+++ .+|.  +..+
T Consensus        89 ----~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l  152 (454)
T 1jl5_A           89 ----LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNS  152 (454)
T ss_dssp             ----CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTC
T ss_pred             ----CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCC
Confidence                23677788888887774 6642    3677788888877774 2321   157777777777777 4663  5677


Q ss_pred             CcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEE
Q 036932          327 ISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLL  406 (790)
Q Consensus       327 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~  406 (790)
                      ++|++|++++|.+++ +|..   .++|++|++++|++++ +| .++.+++|++|++++|++++ +|...    ..|+.|+
T Consensus       153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L~  221 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP----LSLESIV  221 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC----TTCCEEE
T ss_pred             CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc----CcccEEE
Confidence            777777777777765 3332   2477777777777775 44 46777777777777777774 44322    1377777


Q ss_pred             ccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCccccc
Q 036932          407 MSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGV  486 (790)
Q Consensus       407 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~  486 (790)
                      +++|.++ .+| .+..+++|++|++++|.+++...   .+++|++|++++|++++ +|..   .++|+.|++++|++++.
T Consensus       222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             CCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred             CcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence            7777776 455 36667777777777777765322   13567777777777764 4432   25677777777776652


Q ss_pred             CchhhhcCccccEEeccCccccccCCccccCC-CCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccc
Q 036932          487 IPHQISESLTLRFLLLRGNYLEGQIPNQLCQL-RRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFV  565 (790)
Q Consensus       487 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l-~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (790)
                       |..   .++|+.|++++|++++. +    .+ ++|+.|++++|++++ +|..                           
T Consensus       293 -~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---------------------------  335 (454)
T 1jl5_A          293 -SEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---------------------------  335 (454)
T ss_dssp             -SCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---------------------------
T ss_pred             -cCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---------------------------
Confidence             111   14667777777766642 1    22 466777777776663 4421                           


Q ss_pred             ccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccC
Q 036932          566 GSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSY  644 (790)
Q Consensus       566 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~  644 (790)
                                                                   ++.|+.|++++|+++ .+|.   .+. |+.|++++
T Consensus       336 ---------------------------------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~  366 (454)
T 1jl5_A          336 ---------------------------------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEY  366 (454)
T ss_dssp             ---------------------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred             ---------------------------------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCC
Confidence                                                         235666777777766 4555   233 66677777


Q ss_pred             Ccccc--ccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCccee--cCCCC
Q 036932          645 NFLSG--SIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSG--LIPDK  702 (790)
Q Consensus       645 N~l~g--~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g--~iP~~  702 (790)
                      |++++  .+|.++++        |+.|.+.|.+|..   +++|++||+++|+++|  .||.+
T Consensus       367 N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          367 NPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             SCCSSCCCCCTTCCE--------EECCC----------------------------------
T ss_pred             CCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence            77766  56655442        3346666666653   3789999999999998  88864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.9e-36  Score=333.53  Aligned_cols=323  Identities=22%  Similarity=0.226  Sum_probs=228.4

Q ss_pred             eeeeChhhhcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCccc
Q 036932           24 ILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCL  103 (790)
Q Consensus        24 ~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  103 (790)
                      .....+..++++++|++|++++|.++.++++..+++|++|++++|.+++.    .+..+++|++|++++|.+.+. +  +
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~-~--~  102 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL-D--V  102 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCC-C--C
T ss_pred             cCcccccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCcee-e--c
Confidence            33334457888999999999999999767899999999999999999875    288999999999999999975 3  8


Q ss_pred             CCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccc
Q 036932          104 KNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQL  183 (790)
Q Consensus       104 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L  183 (790)
                      +++++|++|++++|++++. |  ++.+++|++|++++|.+++ ++   +.++++|++|++++|.....+   .+..+++|
T Consensus       103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L  172 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL---DVTPQTQL  172 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTC
T ss_pred             CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc---ccccCCcC
Confidence            9999999999999999974 4  8999999999999999986 33   778999999999988655544   35667778


Q ss_pred             eEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecC
Q 036932          184 KVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNN  263 (790)
Q Consensus       184 ~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n  263 (790)
                      +.|++++|+++.+|  +..+++|+.|++++|.+++ ++   +..+++|++|++++|.+++.   ++..+++|+.|++++|
T Consensus       173 ~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~i---p~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          173 TTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSS
T ss_pred             CEEECCCCccceec--cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCccccc---CccccCCCCEEEeeCC
Confidence            88888888887776  6677778888888877774 33   34677777777777777763   3666777777777777


Q ss_pred             CCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccc
Q 036932          264 NLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQI  343 (790)
Q Consensus       264 ~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~  343 (790)
                      ++++ +|.   ..+++|+.|+++.|              +|+.|++++|.+.|.+|.   ..+++|+.|++++|...+.+
T Consensus       244 ~l~~-~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l  302 (457)
T 3bz5_A          244 PLTE-LDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLL  302 (457)
T ss_dssp             CCSC-CCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEE
T ss_pred             cCCC-cCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc---cccccCCEEECCCCccccee
Confidence            7773 342   23566666666554              345666777766666652   35666666666666655554


Q ss_pred             cccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCcccc
Q 036932          344 FPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLK  413 (790)
Q Consensus       344 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~  413 (790)
                      |.   ..++|+.|++++|             ++|++|++++|++++. +  +..++. |+.|++++|+++
T Consensus       303 ~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~-L~~L~l~~N~l~  352 (457)
T 3bz5_A          303 DC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTK-LKSLSCVNAHIQ  352 (457)
T ss_dssp             EC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTT-CSEEECCSSCCC
T ss_pred             cc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCc-CcEEECCCCCCC
Confidence            43   2233444333322             4455555555555542 1  333333 444444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=341.73  Aligned_cols=343  Identities=20%  Similarity=0.181  Sum_probs=270.8

Q ss_pred             cccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccc
Q 036932          306 FLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNN  385 (790)
Q Consensus       306 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  385 (790)
                      .++.+++.++ .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|
T Consensus        15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            4555555555 555533   246677777777777666667777777777777777777666777777777777777777


Q ss_pred             cCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccc
Q 036932          386 LLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIP  464 (790)
Q Consensus       386 ~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p  464 (790)
                      ++++..+..+..++. |+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..+
T Consensus        91 ~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           91 RLKLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCCSCCTTSSTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             cCCccCcccccCCCC-CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            777544455666666 7777777777777777778888888888888888888777777 78899999999999987667


Q ss_pred             hhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh-hHHHHH
Q 036932          465 IALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS-CLTIML  543 (790)
Q Consensus       465 ~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~-~~~~~~  543 (790)
                      ..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+.+|.......+|+.|++++|+++ .+|. .+    
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~----  244 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAV----  244 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHH----
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHh----
Confidence            77889999999999999999888888899999999999999888888877777789999999999998 4553 22    


Q ss_pred             HhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCc
Q 036932          544 LWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQ  623 (790)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  623 (790)
                                                                                       ..++.|+.|+|++|+
T Consensus       245 -----------------------------------------------------------------~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          245 -----------------------------------------------------------------RHLVYLRFLNLSYNP  259 (477)
T ss_dssp             -----------------------------------------------------------------TTCTTCCEEECCSSC
T ss_pred             -----------------------------------------------------------------cCccccCeeECCCCc
Confidence                                                                             225689999999999


Q ss_pred             ccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCC
Q 036932          624 LTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK  702 (790)
Q Consensus       624 l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  702 (790)
                      +++..+..+..+. |+.|+|++|++++..|..|+++++|+.|||++|+|++..+..|..+++|++|++++|++.|.++..
T Consensus       260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~  339 (477)
T 2id5_A          260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL  339 (477)
T ss_dssp             CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH
T ss_pred             CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH
Confidence            9987777888887 999999999999999999999999999999999999988888999999999999999999887643


Q ss_pred             CcCCCcCcccccCCcCCCCCC
Q 036932          703 GQFATFDESSYRGNLHLCGPT  723 (790)
Q Consensus       703 ~~~~~~~~~~~~gn~~lcg~~  723 (790)
                      ..+.......+.++...|..|
T Consensus       340 ~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          340 WVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             HHHTTTTSSCCTTCCCBEEES
T ss_pred             hHHhhhhccccCccCceeCCc
Confidence            222232334456676677554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.2e-36  Score=334.53  Aligned_cols=359  Identities=20%  Similarity=0.180  Sum_probs=227.3

Q ss_pred             ccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCC
Q 036932           78 GVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSK  157 (790)
Q Consensus        78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~  157 (790)
                      .+.++++|++|++++|.+.+. | .++.+++|++|++++|++++. |  ++.+++|++|++++|.+++. +   +.++++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~~  107 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D---VTPLTK  107 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C---CTTCTT
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e---cCCCCc
Confidence            456677777777777777754 3 577777777777777777754 3  67777777777777777642 2   555666


Q ss_pred             CcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEecc
Q 036932          158 LEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLT  237 (790)
Q Consensus       158 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~  237 (790)
                      |++|++++|.                         ++.+|  +..+++|++|++++|.+++ ++   +..+++|++|+++
T Consensus       108 L~~L~L~~N~-------------------------l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~  156 (457)
T 3bz5_A          108 LTYLNCDTNK-------------------------LTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCH  156 (457)
T ss_dssp             CCEEECCSSC-------------------------CSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECT
T ss_pred             CCEEECCCCc-------------------------CCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECC
Confidence            6666665554                         33333  4445555555555555553 32   2345556666665


Q ss_pred             CCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccc
Q 036932          238 NNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGE  317 (790)
Q Consensus       238 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  317 (790)
                      +|...+..  ++..+++|++|++++|+++ .+|   +..+++|++|++++|.+++.   .++.+++|++|++++|++++ 
T Consensus       157 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-  226 (457)
T 3bz5_A          157 LNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-  226 (457)
T ss_dssp             TCSCCCCC--CCTTCTTCCEEECCSSCCC-CCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred             CCCccccc--ccccCCcCCEEECCCCccc-eec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence            55433321  3445556666666666665 344   22356666666666666543   25556666666666666663 


Q ss_pred             cChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhh
Q 036932          318 LPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGN  397 (790)
Q Consensus       318 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  397 (790)
                      +|   +..+++|+.|++++|.+++..   ...+++|+.|+++.|              +|+.|++++|.+.+.+|  ++.
T Consensus       227 ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~  284 (457)
T 3bz5_A          227 ID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEG  284 (457)
T ss_dssp             CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTT
T ss_pred             cC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccc
Confidence            54   345666666666666666543   234556666665543              34455666666555555  234


Q ss_pred             ccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEe
Q 036932          398 FSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLD  477 (790)
Q Consensus       398 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~  477 (790)
                      ++. |+.|++++|...+.+|.   ..++|+.|++++|            ++|++|++++|++++. +  +..+++|+.|+
T Consensus       285 l~~-L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~  345 (457)
T 3bz5_A          285 CRK-IKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLS  345 (457)
T ss_dssp             CTT-CCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEE
T ss_pred             ccc-CCEEECCCCcccceecc---CCCcceEechhhc------------ccCCEEECCCCccccc-c--cccCCcCcEEE
Confidence            444 66666666666666653   3345666666554            5788999999999873 3  88889999999


Q ss_pred             ccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHH
Q 036932          478 LRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLT  540 (790)
Q Consensus       478 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~  540 (790)
                      +++|++++        ++.|+.|++++|.+.|.     ..+..|+.+++++|+++|.+|..+.
T Consensus       346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence            99999986        25677788999999876     3456778889999999999997643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.1e-35  Score=327.09  Aligned_cols=322  Identities=26%  Similarity=0.324  Sum_probs=213.3

Q ss_pred             cccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEE
Q 036932          277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFL  356 (790)
Q Consensus       277 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  356 (790)
                      +++|++|++++|.+++..+  +..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|++|
T Consensus        67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  139 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL  139 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence            4444444444444443222  444445555555555444 2222  3445555555555555544322  4455555555


Q ss_pred             EcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932          357 YLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL  436 (790)
Q Consensus       357 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  436 (790)
                      ++++|.+++. + .+..+++|+.|+++ |.+.+. + .+..++. |+.|++++|.+++.  ..+..+++|++|++++|.+
T Consensus       140 ~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  211 (466)
T 1o6v_A          140 ELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTT-LERLDISSNKVSDI--SVLAKLTNLESLIATNNQI  211 (466)
T ss_dssp             EEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             ECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-hhccCCC-CCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc
Confidence            5555555432 2 24455555555554 233321 1 1444444 55555555555432  2356677788888888877


Q ss_pred             cCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCcccc
Q 036932          437 SGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLC  516 (790)
Q Consensus       437 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~  516 (790)
                      ++..+ ...+++|++|++++|++++.  ..+..+++|+.|++++|++++..+  +..+++|+.|++++|.+++..+  +.
T Consensus       212 ~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~  284 (466)
T 1o6v_A          212 SDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA  284 (466)
T ss_dssp             CCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred             ccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--cc
Confidence            77655 22677888888888888743  357778888888888888886544  7788888888888888886544  77


Q ss_pred             CCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEE
Q 036932          517 QLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVE  596 (790)
Q Consensus       517 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (790)
                      .+++|+.|++++|++++..|  +                                                         
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~--~---------------------------------------------------------  305 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDISP--I---------------------------------------------------------  305 (466)
T ss_dssp             TCTTCSEEECCSSCCSCCGG--G---------------------------------------------------------
T ss_pred             CCCccCeEEcCCCcccCchh--h---------------------------------------------------------
Confidence            88889999999998874322  1                                                         


Q ss_pred             EeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccC
Q 036932          597 FMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV  675 (790)
Q Consensus       597 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~i  675 (790)
                                  ..++.|+.|++++|++++..|  ++.+. |+.|++++|++++.  ..++++++|+.|++++|++++.+
T Consensus       306 ------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~  369 (466)
T 1o6v_A          306 ------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT  369 (466)
T ss_dssp             ------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCG
T ss_pred             ------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccc
Confidence                        125678899999999887665  56666 99999999999875  47889999999999999999888


Q ss_pred             CccccCCCCCCeEecccCccee
Q 036932          676 PPRLTELNFLSNFNVSFNNLSG  697 (790)
Q Consensus       676 p~~l~~l~~L~~L~ls~N~l~g  697 (790)
                      |  +..+++|+.|++++|++++
T Consensus       370 ~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          370 P--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             G--GTTCTTCCEEECCCEEEEC
T ss_pred             h--hhcCCCCCEEeccCCcccC
Confidence            8  8899999999999999997

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.2e-34  Score=321.17  Aligned_cols=348  Identities=22%  Similarity=0.323  Sum_probs=231.1

Q ss_pred             cCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEE
Q 036932           33 ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVL  112 (790)
Q Consensus        33 ~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  112 (790)
                      ..++++++|+++++.+..++.+..+++|++|++++|.+++..+   +..+++|++|++++|.+.+..+  ++++++|++|
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            3467899999999999988889999999999999999987643   8899999999999999986654  9999999999


Q ss_pred             EccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCC
Q 036932          113 DISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYN  192 (790)
Q Consensus       113 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~  192 (790)
                      ++++|++++..+  +.++++|++|++++|.+++ ++  .+.++++|+.|+++.+ .. ..  ..+..+++|++|++++|.
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~~-~~-~~--~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGNQ-VT-DL--KPLANLTTLERLDISSNK  188 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEES-CC-CC--GGGTTCTTCCEEECCSSC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCCc-cc-Cc--hhhccCCCCCEEECcCCc
Confidence            999999986643  8999999999999999885 33  4888999999988632 11 11  124445555555555555


Q ss_pred             CCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChh
Q 036932          193 LKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPED  272 (790)
Q Consensus       193 l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  272 (790)
                      +..++. +..+++|++|++++|.++                         +..  ++..+++|++|++++|.+. .++ .
T Consensus       189 l~~~~~-l~~l~~L~~L~l~~n~l~-------------------------~~~--~~~~l~~L~~L~l~~n~l~-~~~-~  238 (466)
T 1o6v_A          189 VSDISV-LAKLTNLESLIATNNQIS-------------------------DIT--PLGILTNLDELSLNGNQLK-DIG-T  238 (466)
T ss_dssp             CCCCGG-GGGCTTCSEEECCSSCCC-------------------------CCG--GGGGCTTCCEEECCSSCCC-CCG-G
T ss_pred             CCCChh-hccCCCCCEEEecCCccc-------------------------ccc--cccccCCCCEEECCCCCcc-cch-h
Confidence            544432 444455555555555544                         332  1334444555555555554 222 1


Q ss_pred             HHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCC
Q 036932          273 MGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQ  352 (790)
Q Consensus       273 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  352 (790)
                      + ..+++|++|++++|.+++..+  +..+++|++|++++|.+. .++.  +..+++|+.|++++|.+.+..+  +..+++
T Consensus       239 l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~  310 (466)
T 1o6v_A          239 L-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKN  310 (466)
T ss_dssp             G-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred             h-hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCC
Confidence            1 235566666666666554333  555666666666666665 2332  3456666666666666655433  556666


Q ss_pred             CcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecC
Q 036932          353 LEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVS  432 (790)
Q Consensus       353 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  432 (790)
                      |++|++++|++++..|  +..+++|+.|++++|++++.  ..+..++. |+.|++++|.+++..|  +..+++|+.|+++
T Consensus       311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  383 (466)
T 1o6v_A          311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN-INWLSAGHNQISDLTP--LANLTRITQLGLN  383 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT-CCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred             CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC-CCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence            6666666666665444  45666666777766666643  34555655 7777777777766655  6667777777777


Q ss_pred             CccccCc
Q 036932          433 ENCLSGP  439 (790)
Q Consensus       433 ~n~l~~~  439 (790)
                      +|.+++.
T Consensus       384 ~n~~~~~  390 (466)
T 1o6v_A          384 DQAWTNA  390 (466)
T ss_dssp             CEEEECC
T ss_pred             CCcccCC
Confidence            7777764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.8e-35  Score=311.24  Aligned_cols=255  Identities=35%  Similarity=0.551  Sum_probs=221.3

Q ss_pred             CeEEEccCccccc--cchhhhccCCCCCEEecCC-ccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEe
Q 036932          402 LKVLLMSKMFLKG--NIPAQLLNHGSLNLLSVSE-NCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLD  477 (790)
Q Consensus       402 L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~  477 (790)
                      ++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..+ ++++|++|++++|++++.+|..+..+++|++|+
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            5555566666655  5666666777777777774 77777777766 788888888888888888888888899999999


Q ss_pred             ccCCcccccCchhhhcCccccEEeccCccccccCCccccCCC-CCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcc
Q 036932          478 LRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLR-RLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPY  556 (790)
Q Consensus       478 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~  556 (790)
                      +++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..               
T Consensus       132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~---------------  196 (313)
T 1ogq_A          132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN---------------  196 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG---------------
T ss_pred             CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC---------------
Confidence            999999988899999999999999999999989999999988 8999999999999888876532               


Q ss_pred             cccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce
Q 036932          557 LQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ  636 (790)
Q Consensus       557 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~  636 (790)
                                                                            ++ |+.|++++|++++.+|..++.+.
T Consensus       197 ------------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~  221 (313)
T 1ogq_A          197 ------------------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             ------------------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTS
T ss_pred             ------------------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCC
Confidence                                                                  23 88999999999999999998887


Q ss_pred             -ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccC
Q 036932          637 -IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRG  715 (790)
Q Consensus       637 -L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g  715 (790)
                       |+.|+|++|++++.+|. ++.+++|+.|||++|+|+|.+|..+..+++|++|++++|+++|.+|..+++..+....+.|
T Consensus       222 ~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~  300 (313)
T 1ogq_A          222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN  300 (313)
T ss_dssp             CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred             CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcC
Confidence             99999999999988877 8899999999999999999999999999999999999999999999998899999999999


Q ss_pred             CcCCCCCCCCCCC
Q 036932          716 NLHLCGPTINKSC  728 (790)
Q Consensus       716 n~~lcg~~~~~~c  728 (790)
                      |+.+||.|+. .|
T Consensus       301 N~~lc~~p~~-~C  312 (313)
T 1ogq_A          301 NKCLCGSPLP-AC  312 (313)
T ss_dssp             SSEEESTTSS-CC
T ss_pred             CCCccCCCCC-CC
Confidence            9999998876 46

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.3e-34  Score=320.36  Aligned_cols=294  Identities=21%  Similarity=0.213  Sum_probs=153.2

Q ss_pred             EEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCccc
Q 036932          233 ALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKN  312 (790)
Q Consensus       233 ~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  312 (790)
                      .++.+++.++..   |....+.+++|++++|+++ .++...+..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        15 ~v~c~~~~l~~i---p~~~~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHRKRFVAV---PEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCSCCCSSC---CSCCCTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCcC---CCCCCCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            445555544432   2233345566666666665 232222334566666666666666555555666666666666666


Q ss_pred             ccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCc
Q 036932          313 NFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIP  392 (790)
Q Consensus       313 ~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  392 (790)
                      +++ .+|...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+
T Consensus        91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            655 5555445555566666666666555555555555566666666665555555555555555555555555554444


Q ss_pred             hhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCC
Q 036932          393 HWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSS  471 (790)
Q Consensus       393 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~  471 (790)
                      ..+..++. |+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++... ...+|++|++++|++++..+..+..++
T Consensus       170 ~~l~~l~~-L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  248 (477)
T 2id5_A          170 EALSHLHG-LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV  248 (477)
T ss_dssp             HHHTTCTT-CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred             hHhcccCC-CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence            44444444 5555555555554444445555555555555544444333332 333455555555555432223444455


Q ss_pred             CCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCc
Q 036932          472 NLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       472 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  532 (790)
                      +|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred             ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence            5555555555555444444444555555555555555444444555555555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5.6e-34  Score=327.64  Aligned_cols=334  Identities=21%  Similarity=0.167  Sum_probs=191.6

Q ss_pred             cccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEE
Q 036932          277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFL  356 (790)
Q Consensus       277 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  356 (790)
                      +.+++.+++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|+|++|.+.+..+..|.++++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            456666666666666444444556666666666666665 3443344556666666666666665555555666666666


Q ss_pred             EcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932          357 YLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL  436 (790)
Q Consensus       357 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  436 (790)
                      ++++|.+++..+..|..+++|++|++++|.+++..|..+..++. |+.|++++|.+++..   +..+++|+.|++++|.+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT-CCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc-CcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence            66666665444444555666666666666665555555555554 555555555554321   23344455555555544


Q ss_pred             cCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCcccc
Q 036932          437 SGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLC  516 (790)
Q Consensus       437 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~  516 (790)
                      ++.                            ...++|+.|++++|.++...+. +  .++|+.|++++|.+++  +..+.
T Consensus       205 ~~l----------------------------~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~  251 (597)
T 3oja_B          205 STL----------------------------AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLL  251 (597)
T ss_dssp             SEE----------------------------ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGG
T ss_pred             ccc----------------------------cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--Chhhc
Confidence            432                            1223444455555444422111 1  1345555555555543  23444


Q ss_pred             CCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEE
Q 036932          517 QLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVE  596 (790)
Q Consensus       517 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (790)
                      .+++|+.|+|++|.+++..|..++                                                        
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~--------------------------------------------------------  275 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFV--------------------------------------------------------  275 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGT--------------------------------------------------------
T ss_pred             cCCCCCEEECCCCccCCCCHHHhc--------------------------------------------------------
Confidence            555555555555555544443321                                                        


Q ss_pred             EeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccC
Q 036932          597 FMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV  675 (790)
Q Consensus       597 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~i  675 (790)
                                   .++.|+.|+|++|.+++ +|..++.+. |+.|+|++|.++ .+|..++.+++|+.|||++|+|++..
T Consensus       276 -------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          276 -------------KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             -------------TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             -------------CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence                         13345555555555553 344444444 677777777777 56777778888888888888887653


Q ss_pred             CccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCcCCCCCC
Q 036932          676 PPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPT  723 (790)
Q Consensus       676 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~  723 (790)
                         +..++.|++|++++|+++|.++. ..+..+....+.+++..|+.+
T Consensus       341 ---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          341 ---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             ---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             ---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence               56678889999999999887543 345566666788888888764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.1e-34  Score=309.29  Aligned_cols=333  Identities=21%  Similarity=0.177  Sum_probs=192.6

Q ss_pred             cccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEE
Q 036932          277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFL  356 (790)
Q Consensus       277 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  356 (790)
                      ++++++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            566777777777766444444566677777777777666 4554445566666667776666666666666666666666


Q ss_pred             EcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932          357 YLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL  436 (790)
Q Consensus       357 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  436 (790)
                      ++++|.++...+..+..+++|++|++++|++++..|..+..++. |+.|++++|.+++.   .+..+++|+.|++++|.+
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT-CCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC-CCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            66666666444444566666666666666666555555555555 66666666655543   133445555555555554


Q ss_pred             cCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCcccc
Q 036932          437 SGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLC  516 (790)
Q Consensus       437 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~  516 (790)
                      ++..    ..++|++|++++|.++. +|...  .++|+.|++++|++++.  .++..+++|++|++++|.+++..|..+.
T Consensus       199 ~~~~----~~~~L~~L~l~~n~l~~-~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          199 STLA----IPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             SEEE----CCSSCSEEECCSSCCCE-EECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cccC----CCCcceEEECCCCeeee-ccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence            4321    12345555555555542 22221  24455555555555432  3444455555555555555544444455


Q ss_pred             CCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEE
Q 036932          517 QLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVE  596 (790)
Q Consensus       517 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (790)
                      .+++|+.|++++|+                                                                  
T Consensus       270 ~l~~L~~L~L~~n~------------------------------------------------------------------  283 (390)
T 3o6n_A          270 KMQRLERLYISNNR------------------------------------------------------------------  283 (390)
T ss_dssp             TCSSCCEEECCSSC------------------------------------------------------------------
T ss_pred             ccccCCEEECCCCc------------------------------------------------------------------
Confidence            55555555555554                                                                  


Q ss_pred             EeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccC
Q 036932          597 FMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV  675 (790)
Q Consensus       597 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~i  675 (790)
                                                 +++ +|..++.+. |+.|+|++|+++ .+|..++.+++|+.|||++|+|++. 
T Consensus       284 ---------------------------l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-  333 (390)
T 3o6n_A          284 ---------------------------LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-  333 (390)
T ss_dssp             ---------------------------CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred             ---------------------------Ccc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-
Confidence                                       442 333333333 666666666666 4566667778888888888888754 


Q ss_pred             CccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCcCCCCC
Q 036932          676 PPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGP  722 (790)
Q Consensus       676 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~  722 (790)
                      |  +..++.|++|++++|+++|.... ..+..+....+.+++..|+.
T Consensus       334 ~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          334 K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred             C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence            3  56777888888888888875432 23344444556666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.6e-32  Score=296.22  Aligned_cols=270  Identities=20%  Similarity=0.201  Sum_probs=229.4

Q ss_pred             CCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCc
Q 036932          251 KHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLG  330 (790)
Q Consensus       251 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  330 (790)
                      .+.+++.|++++|.+. .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence            4577889999999988 788888778999999999999999877788999999999999999998 66666678899999


Q ss_pred             EEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCc
Q 036932          331 LLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM  410 (790)
Q Consensus       331 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n  410 (790)
                      +|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..   +..++. |+.+++++|
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~-L~~L~l~~n  196 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPS-LFHANVSYN  196 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTT-CSEEECCSS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccc-cceeecccc
Confidence            9999999998666666789999999999999999888888999999999999999998542   445566 999999999


Q ss_pred             cccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchh
Q 036932          411 FLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQ  490 (790)
Q Consensus       411 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~  490 (790)
                      .+++.     ...++|+.|++++|.++.....  ..++|+.|++++|.+++.  ..+..+++|++|++++|++++..|..
T Consensus       197 ~l~~~-----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          197 LLSTL-----AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             CCSEE-----ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ccccc-----CCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence            88742     3346899999999999876433  357899999999999864  57889999999999999999999999


Q ss_pred             hhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh
Q 036932          491 ISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS  537 (790)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~  537 (790)
                      +..+++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|.
T Consensus       268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~  312 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER  312 (390)
T ss_dssp             GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred             ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCc
Confidence            9999999999999999985 4556677888888888888876 4443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=8.1e-32  Score=288.72  Aligned_cols=305  Identities=23%  Similarity=0.315  Sum_probs=209.6

Q ss_pred             hcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCc
Q 036932          299 GEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELN  378 (790)
Q Consensus       299 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  378 (790)
                      ..+++|++|++++|.+. .++.  +..+++|++|++++|.+++..+  +..+++|++|++++|.++..  ..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           41 EELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             hhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            34455555555555554 3433  3445555555555555554322  55556666666666655532  2355566666


Q ss_pred             EEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCc
Q 036932          379 ELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNS  458 (790)
Q Consensus       379 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~  458 (790)
                      +|++++|.+.+ ++. +..++. |+.|++++|.....++. +..+++|++|++++|.+.+..+ ...+++|++|++++|.
T Consensus       114 ~L~l~~n~i~~-~~~-~~~l~~-L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISD-ISP-LANLTK-MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCC-CGG-GTTCTT-CCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccC-chh-hccCCc-eeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc
Confidence            66666666653 222 455555 66666666644433333 6677778888888887776554 2267788888888888


Q ss_pred             CccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChh
Q 036932          459 LSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSC  538 (790)
Q Consensus       459 l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~  538 (790)
                      +++. +. +..+++|+.|++++|++++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++++ ++. 
T Consensus       189 l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-  260 (347)
T 4fmz_A          189 IEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INA-  260 (347)
T ss_dssp             CCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-
T ss_pred             cccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Chh-
Confidence            8743 33 7778888888888888886543  7788888888888888875544  7888889999999888873 221 


Q ss_pred             HHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEE
Q 036932          539 LTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLD  618 (790)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  618 (790)
                      +                                                                     ..++.|+.|+
T Consensus       261 ~---------------------------------------------------------------------~~l~~L~~L~  271 (347)
T 4fmz_A          261 V---------------------------------------------------------------------KDLTKLKMLN  271 (347)
T ss_dssp             G---------------------------------------------------------------------TTCTTCCEEE
T ss_pred             H---------------------------------------------------------------------hcCCCcCEEE
Confidence            1                                                                     2256788899


Q ss_pred             CCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcce
Q 036932          619 LSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLS  696 (790)
Q Consensus       619 Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~  696 (790)
                      +++|++++ +| .+..+. |+.|++++|++++..|..++++++|+.|++++|++++..|  +..++.|++|++++|+++
T Consensus       272 l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          272 VGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            99998885 33 466666 9999999999999999999999999999999999998777  888999999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.3e-33  Score=293.16  Aligned_cols=249  Identities=28%  Similarity=0.448  Sum_probs=182.2

Q ss_pred             CCcEEEcccccCcC--CCchhhhhccCCCeEEEccC-ccccccchhhhccCCCCCEEecCCccccCcccccc-cccccce
Q 036932          376 ELNELDISNNLLSG--HIPHWIGNFSSDLKVLLMSK-MFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEH  451 (790)
Q Consensus       376 ~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~  451 (790)
                      +++.|++++|.+.+  .+|..+..++. |++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+ .+++|++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~-L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCC-CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            45555555555555  55555555555 66666663 55555666666666666666666666666666655 6667777


Q ss_pred             eeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCc-cccEEeccCccccccCCccccCCCCCCEEEccCCc
Q 036932          452 LYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESL-TLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNR  530 (790)
Q Consensus       452 L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~  530 (790)
                      |++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            77777777767777777777777777777777777777777776 777777777777777777777776 7777777777


Q ss_pred             CcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcc
Q 036932          531 ISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSN  610 (790)
Q Consensus       531 l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (790)
                      +++.+|..+.                                                                     .
T Consensus       209 l~~~~~~~~~---------------------------------------------------------------------~  219 (313)
T 1ogq_A          209 LEGDASVLFG---------------------------------------------------------------------S  219 (313)
T ss_dssp             EEECCGGGCC---------------------------------------------------------------------T
T ss_pred             ccCcCCHHHh---------------------------------------------------------------------c
Confidence            7765554331                                                                     2


Q ss_pred             cccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 036932          611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFN  689 (790)
Q Consensus       611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~  689 (790)
                      ++.|+.|++++|++++.+|. +..+. |+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|.. ..++.|+.++
T Consensus       220 l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~  297 (313)
T 1ogq_A          220 DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA  297 (313)
T ss_dssp             TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGG
T ss_pred             CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHH
Confidence            45677777777777766665 55555 889999999999999999999999999999999999999987 8899999999


Q ss_pred             cccCc-cee
Q 036932          690 VSFNN-LSG  697 (790)
Q Consensus       690 ls~N~-l~g  697 (790)
                      +++|+ +.|
T Consensus       298 l~~N~~lc~  306 (313)
T 1ogq_A          298 YANNKCLCG  306 (313)
T ss_dssp             TCSSSEEES
T ss_pred             hcCCCCccC
Confidence            99998 555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.9e-34  Score=321.99  Aligned_cols=280  Identities=20%  Similarity=0.157  Sum_probs=176.0

Q ss_pred             CCCCEEEeecCCCCccCChhHHhhcccccEecccCCcccc----ccchhhhcccccccccCcccccccccChhhhhcCC-
Q 036932          253 DFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEG----YLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCI-  327 (790)
Q Consensus       253 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~-  327 (790)
                      ++|++|++++|+++......++..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4578888888888744444445678899999999998875    34666777888999999999887555555555566 


Q ss_pred             ---cCcEEEccCCcCcc----cccccccCCCCCcEEEcCCccccccccccc-----CCCCCCcEEEcccccCcCCC----
Q 036932          328 ---SLGLLDLSGNNFYG----QIFPKYMNLTQLEFLYLENNKFSGKIEEGL-----SNSNELNELDISNNLLSGHI----  391 (790)
Q Consensus       328 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~----  391 (790)
                         +|++|++++|.++.    .++..+..+++|++|++++|.++...+..+     ...++|++|++++|++++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888888874    446677788888888888888764433322     23456888888888777533    


Q ss_pred             chhhhhccCCCeEEEccCccccccchhhhcc-----CCCCCEEecCCccccCc----ccccc-cccccceeeccCCcCcc
Q 036932          392 PHWIGNFSSDLKVLLMSKMFLKGNIPAQLLN-----HGSLNLLSVSENCLSGP----MTSSF-NLSSLEHLYLQMNSLSG  461 (790)
Q Consensus       392 p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~l~~~----~~~~~-~l~~L~~L~L~~n~l~~  461 (790)
                      +..+..++. |+.|++++|.+++..+..+..     .++|++|++++|.+++.    ++..+ .+++|++|++++|.+++
T Consensus       163 ~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          163 ASVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHhhCCC-CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence            344444455 677777766665544443332     44666666666666653    23333 45666666666666653


Q ss_pred             cc-----chhhcCCCCCcEEeccCCccccc----CchhhhcCccccEEeccCccccccCCccccC-----CCCCCEEEcc
Q 036932          462 PI-----PIALFRSSNLITLDLRDNRFSGV----IPHQISESLTLRFLLLRGNYLEGQIPNQLCQ-----LRRLGVLDLS  527 (790)
Q Consensus       462 ~~-----p~~~~~~~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-----l~~L~~L~Ls  527 (790)
                      ..     +..+..+++|+.|++++|++++.    ++..+..+++|++|++++|.+++..+..+..     .++|+.|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            22     11222456666666666666543    3455555666666666666665433333222     2466666666


Q ss_pred             CCcCcc
Q 036932          528 HNRISG  533 (790)
Q Consensus       528 ~N~l~g  533 (790)
                      +|.+++
T Consensus       322 ~n~l~~  327 (461)
T 1z7x_W          322 SCSFTA  327 (461)
T ss_dssp             TSCCBG
T ss_pred             CCCCch
Confidence            666653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=9.2e-32  Score=309.18  Aligned_cols=315  Identities=20%  Similarity=0.179  Sum_probs=234.7

Q ss_pred             CCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCc
Q 036932          251 KHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLG  330 (790)
Q Consensus       251 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  330 (790)
                      .+..++.+++++|.+. .+|..++..+++|++|++++|.+++..|..++.+++|++|++++|.+. .+|...+.++++|+
T Consensus        49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCC
Confidence            3567888888888887 788888788999999999999999888889999999999999999998 56666778999999


Q ss_pred             EEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCc
Q 036932          331 LLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM  410 (790)
Q Consensus       331 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n  410 (790)
                      +|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..   +..++. |+.|++++|
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~-L~~L~l~~n  202 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPS-LFHANVSYN  202 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTT-CSEEECCSS
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhh-hhhhhcccC
Confidence            9999999999776667889999999999999999888888999999999999999998653   444556 999999999


Q ss_pred             cccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchh
Q 036932          411 FLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQ  490 (790)
Q Consensus       411 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~  490 (790)
                      .+++.     ...++|+.|++++|.++...+..  .                        ++|+.|++++|.+++  +.+
T Consensus       203 ~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~--~------------------------~~L~~L~L~~n~l~~--~~~  249 (597)
T 3oja_B          203 LLSTL-----AIPIAVEELDASHNSINVVRGPV--N------------------------VELTILKLQHNNLTD--TAW  249 (597)
T ss_dssp             CCSEE-----ECCTTCSEEECCSSCCCEEECSC--C------------------------SCCCEEECCSSCCCC--CGG
T ss_pred             ccccc-----cCCchhheeeccCCccccccccc--C------------------------CCCCEEECCCCCCCC--Chh
Confidence            88752     23346777777777665433221  1                        345555555555553  244


Q ss_pred             hhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccc
Q 036932          491 ISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGT  570 (790)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  570 (790)
                      +..+++|+.|++++|.+++..|..+..+++|+.|+|++|++++ +|..+                               
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~-------------------------------  297 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG-------------------------------  297 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSS-------------------------------
T ss_pred             hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccc-------------------------------
Confidence            5556666666666666666666666666666666666666653 22110                               


Q ss_pred             cccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCcccc
Q 036932          571 YYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSG  649 (790)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g  649 (790)
                                                            ..++.|+.|+|++|.++ .+|..++.+. |+.|+|++|.+++
T Consensus       298 --------------------------------------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          298 --------------------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             --------------------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             --------------------------------------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence                                                  12456677777777776 5666666665 8888888888875


Q ss_pred             ccCccccCCCCCCEEEccCCcccccCCcc
Q 036932          650 SIPGSFSNLKWIESLDLSHNRLSGQVPPR  678 (790)
Q Consensus       650 ~ip~~l~~l~~L~~LdLs~N~lsg~ip~~  678 (790)
                      . |  ++.+++|+.|+|++|.+++..+..
T Consensus       339 ~-~--~~~~~~L~~L~l~~N~~~~~~~~~  364 (597)
T 3oja_B          339 L-K--LSTHHTLKNLTLSHNDWDCNSLRA  364 (597)
T ss_dssp             C-C--CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred             c-C--hhhcCCCCEEEeeCCCCCChhHHH
Confidence            4 3  677889999999999998764433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=7e-31  Score=281.42  Aligned_cols=308  Identities=23%  Similarity=0.329  Sum_probs=213.3

Q ss_pred             hhcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCc
Q 036932           31 GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLK  110 (790)
Q Consensus        31 ~~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  110 (790)
                      .+..+++|++|+++++.+..++.+..+++|++|++++|.+++..+   +..+++|++|++++|.+...  +++.++++|+
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            456788899999999988877778888999999999998886543   77888888888888888753  3688888888


Q ss_pred             EEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCC
Q 036932          111 VLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPN  190 (790)
Q Consensus       111 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~  190 (790)
                      +|++++|++.+..+  +..+++|++|++++|.....++  .+..+++|++|++++|.                       
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~-----------------------  166 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESK-----------------------  166 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSC-----------------------
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCC-----------------------
Confidence            88888888875433  7888888888888886554433  36666666666666554                       


Q ss_pred             CCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCC
Q 036932          191 YNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLP  270 (790)
Q Consensus       191 n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p  270 (790)
                        +..++. +..+++|+.|++++|.+. .++.  +..+++|+.+++++|.+++...  +..+++|++|++++|.++ .++
T Consensus       167 --~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~  237 (347)
T 4fmz_A          167 --VKDVTP-IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLS  237 (347)
T ss_dssp             --CCCCGG-GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG
T ss_pred             --cCCchh-hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCc
Confidence              333332 445555666666666555 3333  3355666666666666555432  445666666666666666 333


Q ss_pred             hhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCC
Q 036932          271 EDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNL  350 (790)
Q Consensus       271 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  350 (790)
                      .  +..+++|++|++++|.+++.  +.+..+++|++|++++|++. .++  .+..+++|+.|++++|.+.+..+..+..+
T Consensus       238 ~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  310 (347)
T 4fmz_A          238 P--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS-DIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGL  310 (347)
T ss_dssp             G--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred             c--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC-CCh--hhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence            3  23467777777777777642  35667777777777777776 343  25677788888888888877777777788


Q ss_pred             CCCcEEEcCCcccccccccccCCCCCCcEEEcccccCc
Q 036932          351 TQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS  388 (790)
Q Consensus       351 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  388 (790)
                      ++|++|++++|++++..|  +..+++|++|++++|.++
T Consensus       311 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            888888888888876555  677888888888888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.8e-30  Score=276.15  Aligned_cols=286  Identities=22%  Similarity=0.236  Sum_probs=158.4

Q ss_pred             ccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEc
Q 036932          303 ALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDI  382 (790)
Q Consensus       303 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  382 (790)
                      +++.++++++.++ .+|..+   .++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4566666666665 566543   256677777777776666666777777777777777777666677777777777777


Q ss_pred             ccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccC--cccccc-cccccceeeccCCcC
Q 036932          383 SNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSG--PMTSSF-NLSSLEHLYLQMNSL  459 (790)
Q Consensus       383 s~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~-~l~~L~~L~L~~n~l  459 (790)
                      ++|+++ .+|..+.  .. |+.|++++|.+++..+..+..+++|++|++++|.++.  ..+..+ .+ +|++|++++|++
T Consensus       110 ~~n~l~-~l~~~~~--~~-L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SS-LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC--TT-CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc--cc-CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            777776 4444333  22 5555555555554444445555555555555555532  333333 22 455555555555


Q ss_pred             ccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhH
Q 036932          460 SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCL  539 (790)
Q Consensus       460 ~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~  539 (790)
                      ++ +|..+.  ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++                   
T Consensus       185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-------------------  242 (332)
T 2ft3_A          185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT-------------------  242 (332)
T ss_dssp             SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT-------------------
T ss_pred             Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC-------------------
Confidence            42 333322  34444444444444444444444444444444444444444444444444                   


Q ss_pred             HHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEEC
Q 036932          540 TIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDL  619 (790)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  619 (790)
                                                                                                |+.|++
T Consensus       243 --------------------------------------------------------------------------L~~L~L  248 (332)
T 2ft3_A          243 --------------------------------------------------------------------------LRELHL  248 (332)
T ss_dssp             --------------------------------------------------------------------------CCEEEC
T ss_pred             --------------------------------------------------------------------------CCEEEC
Confidence                                                                                      444555


Q ss_pred             CCCcccccCChhhhhce-ecceeccCCccccccCccccC------CCCCCEEEccCCccc--ccCCccccCCCCCCeEec
Q 036932          620 SCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSN------LKWIESLDLSHNRLS--GQVPPRLTELNFLSNFNV  690 (790)
Q Consensus       620 s~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~------l~~L~~LdLs~N~ls--g~ip~~l~~l~~L~~L~l  690 (790)
                      ++|+++ .+|..++.+. |+.|++++|++++..+..|..      ..+|+.|++++|.+.  +..|..|..++.|+.+++
T Consensus       249 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l  327 (332)
T 2ft3_A          249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF  327 (332)
T ss_dssp             CSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred             CCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence            555544 4444444444 555555555555544444443      356777777777776  566677777777777777


Q ss_pred             ccCc
Q 036932          691 SFNN  694 (790)
Q Consensus       691 s~N~  694 (790)
                      ++|+
T Consensus       328 ~~n~  331 (332)
T 2ft3_A          328 GNYK  331 (332)
T ss_dssp             ----
T ss_pred             cccc
Confidence            7763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.6e-30  Score=272.13  Aligned_cols=219  Identities=21%  Similarity=0.229  Sum_probs=116.6

Q ss_pred             ccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEc
Q 036932          303 ALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDI  382 (790)
Q Consensus       303 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  382 (790)
                      +++.++++++.++ .+|..+   .+++++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4555555555554 455432   245666666666666655556666677777777777766666666667777777777


Q ss_pred             ccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccC--cccccc-cccccceeeccCCcC
Q 036932          383 SNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSG--PMTSSF-NLSSLEHLYLQMNSL  459 (790)
Q Consensus       383 s~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~-~l~~L~~L~L~~n~l  459 (790)
                      ++|+++ .+|..+.  .. |+.|++++|.+++..+..+..+++|++|++++|.++.  ..+..+ .+++|++|++++|.+
T Consensus       108 s~n~l~-~l~~~~~--~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KT-LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCS-BCCSSCC--TT-CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhhc--cc-ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            777666 4444332  22 5556665555555555555555556666666555542  233333 444555555555554


Q ss_pred             ccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCc
Q 036932          460 SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       460 ~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  532 (790)
                      + .+|..+.  ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus       184 ~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          184 T-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             C-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             c-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence            4 2333222  34444444444444444444444444444444444444444444444444444444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.5e-32  Score=306.76  Aligned_cols=388  Identities=21%  Similarity=0.102  Sum_probs=231.3

Q ss_pred             CCCcEEEccCCCCCCCChh-hhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceE
Q 036932          107 SHLKVLDISYNQLSGTLPS-AITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKV  185 (790)
Q Consensus       107 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~  185 (790)
                      ++|++||+++|+++..... .+..+++|++|++++|.+++...                                     
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-------------------------------------   45 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC-------------------------------------   45 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH-------------------------------------
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH-------------------------------------
Confidence            5677888888877644333 36677777888877777653210                                     


Q ss_pred             EeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCC----CCcEEeccCCccccc----ccCCCCCCCCCCE
Q 036932          186 LGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNT----KLEALFLTNNSFTGN----LQLPKTKHDFLHH  257 (790)
Q Consensus       186 L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~----~L~~L~L~~n~l~~~----~~~~~~~~~~L~~  257 (790)
                              ..++..+..+++|++|++++|.+++..+..++..++    +|++|++++|.++..    .+..+..+++|++
T Consensus        46 --------~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~  117 (461)
T 1z7x_W           46 --------KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE  117 (461)
T ss_dssp             --------HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCE
T ss_pred             --------HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeE
Confidence                    012222333334444444444443222323332333    344555555444421    1122334555555


Q ss_pred             EEeecCCCCccCChhHHhh----cccccEecccCCcccccc----chhhhcccccccccCcccccccccChhhh----hc
Q 036932          258 LDVSNNNLTGKLPEDMGII----LQKLLYIDMSDNRFEGYL----PSSIGEMKALIFLRLPKNNFSGELPAPLL----TG  325 (790)
Q Consensus       258 L~Ls~n~l~~~~p~~~~~~----l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~----~~  325 (790)
                      |++++|.+.+..+..+...    .++|++|++++|.+++..    +..+..+++|++|++++|.+.+..+..+.    ..
T Consensus       118 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  197 (461)
T 1z7x_W          118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS  197 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHS
T ss_pred             EECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcC
Confidence            5555555543323322221    235666777666666532    44455566777777777766533222221    13


Q ss_pred             CCcCcEEEccCCcCccc----ccccccCCCCCcEEEcCCccccccc-----ccccCCCCCCcEEEcccccCcCC----Cc
Q 036932          326 CISLGLLDLSGNNFYGQ----IFPKYMNLTQLEFLYLENNKFSGKI-----EEGLSNSNELNELDISNNLLSGH----IP  392 (790)
Q Consensus       326 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~----~p  392 (790)
                      .++|++|++++|.++..    ++..+..+++|++|++++|.++...     +..+..+++|++|++++|.+++.    ++
T Consensus       198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  277 (461)
T 1z7x_W          198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC  277 (461)
T ss_dssp             CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence            45777777777777653    3455566777777777777765432     22233567777777777777643    45


Q ss_pred             hhhhhccCCCeEEEccCccccccchhhhcc-----CCCCCEEecCCccccCcc----cccc-cccccceeeccCCcCccc
Q 036932          393 HWIGNFSSDLKVLLMSKMFLKGNIPAQLLN-----HGSLNLLSVSENCLSGPM----TSSF-NLSSLEHLYLQMNSLSGP  462 (790)
Q Consensus       393 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~----~~~~-~l~~L~~L~L~~n~l~~~  462 (790)
                      ..+..++. |+.|++++|.+++..+..+..     .++|++|++++|.+++..    +..+ .+++|++|++++|.+++.
T Consensus       278 ~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          278 RVLRAKES-LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             HHHHHCTT-CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             HHHhhCCC-cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence            55666666 777777777776554444433     257888888888887653    3333 568888888888888765


Q ss_pred             cchhhcC-----CCCCcEEeccCCcccc----cCchhhhcCccccEEeccCccccccCCcccc-----CCCCCCEEEccC
Q 036932          463 IPIALFR-----SSNLITLDLRDNRFSG----VIPHQISESLTLRFLLLRGNYLEGQIPNQLC-----QLRRLGVLDLSH  528 (790)
Q Consensus       463 ~p~~~~~-----~~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~-----~l~~L~~L~Ls~  528 (790)
                      .+..+..     .++|++|++++|++++    .+|.++..+++|++|++++|++++.....+.     ...+|+.|++.+
T Consensus       357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~  436 (461)
T 1z7x_W          357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD  436 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecc
Confidence            5544432     6788999999998886    6777888888899999999988754222221     245788888888


Q ss_pred             CcCcccCChhHH
Q 036932          529 NRISGSIPSCLT  540 (790)
Q Consensus       529 N~l~g~~p~~~~  540 (790)
                      +.+....+..+.
T Consensus       437 ~~~~~~~~~~l~  448 (461)
T 1z7x_W          437 IYWSEEMEDRLQ  448 (461)
T ss_dssp             CCCCHHHHHHHH
T ss_pred             cccCHHHHHHHH
Confidence            887755444433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.6e-30  Score=272.95  Aligned_cols=287  Identities=21%  Similarity=0.207  Sum_probs=228.4

Q ss_pred             CCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccC
Q 036932          230 KLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRL  309 (790)
Q Consensus       230 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  309 (790)
                      +++.++++++.++..   |....+.+++|++++|.+. .++...+..+++|++|++++|.+++..|..++.+++|++|++
T Consensus        34 ~l~~l~~~~~~l~~i---p~~~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAV---PKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSSC---CSCCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcccc---CCCCCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            355566666555432   2223456777777777777 444433455788888888888888777888888888888888


Q ss_pred             cccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCccccc--ccccccCCCCCCcEEEcccccC
Q 036932          310 PKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSG--KIEEGLSNSNELNELDISNNLL  387 (790)
Q Consensus       310 s~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l  387 (790)
                      ++|+++ .+|..++   ++|++|++++|.+.+..+..+..+++|++|++++|.++.  ..+..+..+ +|++|++++|++
T Consensus       110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            888887 7776543   788999999998887777778888999999999998853  667777777 899999999998


Q ss_pred             cCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchh
Q 036932          388 SGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIA  466 (790)
Q Consensus       388 ~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~  466 (790)
                      ++ +|..+.  .. |+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|+++ .+|..
T Consensus       185 ~~-l~~~~~--~~-L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~  259 (332)
T 2ft3_A          185 TG-IPKDLP--ET-LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG  259 (332)
T ss_dssp             SS-CCSSSC--SS-CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred             Cc-cCcccc--CC-CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence            84 665544  33 9999999999998888889999999999999999999888777 8899999999999998 78888


Q ss_pred             hcCCCCCcEEeccCCcccccCchhhhc------CccccEEeccCcccc--ccCCccccCCCCCCEEEccCCc
Q 036932          467 LFRSSNLITLDLRDNRFSGVIPHQISE------SLTLRFLLLRGNYLE--GQIPNQLCQLRRLGVLDLSHNR  530 (790)
Q Consensus       467 ~~~~~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~Ls~N~  530 (790)
                      +..+++|++|++++|++++..+..+..      ...|+.|++++|.+.  +..|..+..+++|+.+++++|+
T Consensus       260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            999999999999999999877776654      367899999999987  6778889999999999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.3e-29  Score=269.33  Aligned_cols=268  Identities=20%  Similarity=0.208  Sum_probs=204.1

Q ss_pred             CCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEE
Q 036932          253 DFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLL  332 (790)
Q Consensus       253 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L  332 (790)
                      +.+++|++++|.++ .++...+..+++|++|++++|.+++..|..++.+++|++|++++|+++ .+|..++   ++|++|
T Consensus        52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L  126 (330)
T 1xku_A           52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQEL  126 (330)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEE
T ss_pred             CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEE
Confidence            45666666666666 344433345677777777777777666777777777777777777776 6666543   677888


Q ss_pred             EccCCcCcccccccccCCCCCcEEEcCCccccc--ccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCc
Q 036932          333 DLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSG--KIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM  410 (790)
Q Consensus       333 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n  410 (790)
                      ++++|.+.+..+..+.++++|++|++++|.++.  ..+..+..+++|++|++++|.++ .+|..+.  +. |+.|++++|
T Consensus       127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~-L~~L~l~~n  202 (330)
T 1xku_A          127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PS-LTELHLDGN  202 (330)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TT-CSEEECTTS
T ss_pred             ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--cc-CCEEECCCC
Confidence            888888877666677778888888888887753  56667777888888888888887 4555443  33 888888888


Q ss_pred             cccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCch
Q 036932          411 FLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPH  489 (790)
Q Consensus       411 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~  489 (790)
                      .+++..|..+..+++|++|++++|.+++..+..+ .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus       203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence            8888778888888999999999999988777666 7889999999999998 7888889999999999999999977766


Q ss_pred             hhhc------CccccEEeccCccccc--cCCccccCCCCCCEEEccCCc
Q 036932          490 QISE------SLTLRFLLLRGNYLEG--QIPNQLCQLRRLGVLDLSHNR  530 (790)
Q Consensus       490 ~~~~------l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~Ls~N~  530 (790)
                      .+..      .+.++.|++++|.+..  ..|..+..+++++.++|++|+
T Consensus       282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             hcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            6643      3678899999998863  567788889999999999985

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=6.1e-29  Score=266.70  Aligned_cols=280  Identities=17%  Similarity=0.154  Sum_probs=160.7

Q ss_pred             CCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEE
Q 036932          326 CISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVL  405 (790)
Q Consensus       326 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L  405 (790)
                      |+.....+.+++.++. +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..++. |++|
T Consensus        30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS-LEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEE
T ss_pred             CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC-CCEE
Confidence            4444556666666653 333322  46666666666666555556666666666666666666554555555544 5555


Q ss_pred             EccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCC-ccc
Q 036932          406 LMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN-RFS  484 (790)
Q Consensus       406 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N-~l~  484 (790)
                      ++++|.+++..+..+..+++|++|++++|.+++..+.                      ..+..+++|++|++++| .++
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----------------------~~~~~l~~L~~L~l~~n~~~~  163 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET----------------------SLFSHLTKLQILRVGNMDTFT  163 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS----------------------CSCTTCTTCCEEEEEESSSCC
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch----------------------hhhccCCCCcEEECCCCcccc
Confidence            5555555443333344444444444444444433220                      24445555555555555 344


Q ss_pred             ccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccc
Q 036932          485 GVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIF  564 (790)
Q Consensus       485 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (790)
                      +..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++. .+|..+.                        
T Consensus       164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~------------------------  218 (353)
T 2z80_A          164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV------------------------  218 (353)
T ss_dssp             EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHH------------------------
T ss_pred             ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhh------------------------
Confidence            444445555555555555555555555555555555555555555553 2222211                        


Q ss_pred             cccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce----ecce
Q 036932          565 VGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ----IRGL  640 (790)
Q Consensus       565 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~----L~~L  640 (790)
                                                                  ..++.|+.|++++|++++..+..+....    ++.+
T Consensus       219 --------------------------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l  254 (353)
T 2z80_A          219 --------------------------------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF  254 (353)
T ss_dssp             --------------------------------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred             --------------------------------------------hhcccccEEECCCCccccccccccccccccchhhcc
Confidence                                                        0134555556666655544443333211    5555


Q ss_pred             eccCCcccc----ccCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCCeEecccCcceecCCC
Q 036932          641 NLSYNFLSG----SIPGSFSNLKWIESLDLSHNRLSGQVPPR-LTELNFLSNFNVSFNNLSGLIPD  701 (790)
Q Consensus       641 ~Ls~N~l~g----~ip~~l~~l~~L~~LdLs~N~lsg~ip~~-l~~l~~L~~L~ls~N~l~g~iP~  701 (790)
                      +|+++.+++    .+|+.++++++|+.|||++|+|+ .+|.. |..+++|++|++++|+++|.+|.
T Consensus       255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            555555554    57888999999999999999999 55655 58999999999999999998873

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=8e-30  Score=294.05  Aligned_cols=378  Identities=14%  Similarity=0.037  Sum_probs=193.0

Q ss_pred             CCCCCEEEeecCCCCccCChhHHhhccc-ccEecccCCc-ccc-ccchhhhcccccccccCcccccccccC---hhhhhc
Q 036932          252 HDFLHHLDVSNNNLTGKLPEDMGIILQK-LLYIDMSDNR-FEG-YLPSSIGEMKALIFLRLPKNNFSGELP---APLLTG  325 (790)
Q Consensus       252 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~-L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~i~---~~~~~~  325 (790)
                      +++|++|++++|.+++..+..+...+++ |++|++++|. ++. .++.....+++|++|++++|.+.+.-.   ......
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  190 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH  190 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence            4455555555555543333333332333 5555555554 111 112222345555556665555543211   112334


Q ss_pred             CCcCcEEEccCCcCcc----cccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCc---CCCchhhhhc
Q 036932          326 CISLGLLDLSGNNFYG----QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS---GHIPHWIGNF  398 (790)
Q Consensus       326 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~p~~~~~~  398 (790)
                      +++|++|++++|.+.+    .++..+.++++|++|++++|.+.+ ++..+..+++|+.|+++.....   +..+..+..+
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  269 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP  269 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence            5556666666555542    222233445566666666655553 3445555566666665542221   1222333444


Q ss_pred             cCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCccccc-c-cccccceeeccCCcCccccchhhcCCCCCcEE
Q 036932          399 SSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSS-F-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITL  476 (790)
Q Consensus       399 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L  476 (790)
                      .. |+.++++++. .+.+|..+..+++|++|++++|.+++..... + .+++|++|+++++-..+.++.....+++|++|
T Consensus       270 ~~-L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          270 RK-LCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             TT-CCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             cc-ccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence            44 6666655532 2345555555666666666666654433322 2 56666666666322222233344556666677


Q ss_pred             eccC-----------CcccccCc-hhhhcCccccEEeccCccccccCCccccC-CCCCCEEEcc----CCcCcccCCh-h
Q 036932          477 DLRD-----------NRFSGVIP-HQISESLTLRFLLLRGNYLEGQIPNQLCQ-LRRLGVLDLS----HNRISGSIPS-C  538 (790)
Q Consensus       477 ~L~~-----------N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-l~~L~~L~Ls----~N~l~g~~p~-~  538 (790)
                      ++++           |.+++... .....+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.... .
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            6662           44543322 22344666777777666666655555544 6677777775    4555532111 1


Q ss_pred             HHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEE
Q 036932          539 LTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLD  618 (790)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  618 (790)
                      +....                                                                 ..++.|+.|+
T Consensus       428 ~~~~~-----------------------------------------------------------------~~~~~L~~L~  442 (592)
T 3ogk_B          428 VRSLL-----------------------------------------------------------------IGCKKLRRFA  442 (592)
T ss_dssp             HHHHH-----------------------------------------------------------------HHCTTCCEEE
T ss_pred             HHHHH-----------------------------------------------------------------HhCCCCCEEE
Confidence            11100                                                                 1245666667


Q ss_pred             CCCC--cccccCChhhhh-ce-ecceeccCCcccc-ccCccccCCCCCCEEEccCCccccc-CCccccCCCCCCeEeccc
Q 036932          619 LSCN--QLTGGIPSEIGD-LQ-IRGLNLSYNFLSG-SIPGSFSNLKWIESLDLSHNRLSGQ-VPPRLTELNFLSNFNVSF  692 (790)
Q Consensus       619 Ls~N--~l~g~ip~~~~~-l~-L~~L~Ls~N~l~g-~ip~~l~~l~~L~~LdLs~N~lsg~-ip~~l~~l~~L~~L~ls~  692 (790)
                      ++++  .+++..+..++. +. |+.|+|++|++++ .++..+.++++|+.|||++|.+++. ++.....+++|++|++++
T Consensus       443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~  522 (592)
T 3ogk_B          443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG  522 (592)
T ss_dssp             EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred             EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence            6533  355555555544 33 7777777777765 3344456677777777777777654 333344567777777777


Q ss_pred             Cccee
Q 036932          693 NNLSG  697 (790)
Q Consensus       693 N~l~g  697 (790)
                      |++++
T Consensus       523 n~it~  527 (592)
T 3ogk_B          523 YRASM  527 (592)
T ss_dssp             CBCCT
T ss_pred             CcCCH
Confidence            77654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.2e-29  Score=290.39  Aligned_cols=426  Identities=12%  Similarity=0.053  Sum_probs=311.3

Q ss_pred             CcchhhhCCCCCCEEEccCCCCC---CcCc-----------hhHhhCCCCCcEEeccCCcccccccCCCCC-CCC-CCEE
Q 036932          195 VIPSFLLHQYDLKLLDLSGNNLV---GDFP-----------TWVLRNNTKLEALFLTNNSFTGNLQLPKTK-HDF-LHHL  258 (790)
Q Consensus       195 ~lp~~l~~l~~L~~L~Ls~n~l~---~~ip-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~-L~~L  258 (790)
                      ..+..+..+++|+.|+++++...   +.+|           ..+...+++|++|+|++|.+++.....+.. ++. |++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            34456677899999999885321   1222           223347899999999999877543222222 334 9999


Q ss_pred             EeecCC-CCccCChhHHhhcccccEecccCCccccc----cchhhhcccccccccCcccccc----cccChhhhhcCCcC
Q 036932          259 DVSNNN-LTGKLPEDMGIILQKLLYIDMSDNRFEGY----LPSSIGEMKALIFLRLPKNNFS----GELPAPLLTGCISL  329 (790)
Q Consensus       259 ~Ls~n~-l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~----~~i~~~~~~~l~~L  329 (790)
                      ++++|. +...-...+...+++|++|++++|.+++.    ++.....+++|++|++++|.+.    +.++ .++..+++|
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L  222 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSL  222 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhCCCC
Confidence            999987 22111122234689999999999998766    4445677899999999999986    2232 234689999


Q ss_pred             cEEEccCCcCcccccccccCCCCCcEEEcCCcccc---cccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEE
Q 036932          330 GLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFS---GKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLL  406 (790)
Q Consensus       330 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~  406 (790)
                      ++|++++|.+.+ ++..+..+++|++|+++.....   +..+..+..+++|+.++++++.. +.+|..+..++. |+.|+
T Consensus       223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~-L~~L~  299 (592)
T 3ogk_B          223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQ-IRKLD  299 (592)
T ss_dssp             CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGG-CCEEE
T ss_pred             cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCC-CcEEe
Confidence            999999999886 5677889999999999864332   23445677889999999998643 467888888887 99999


Q ss_pred             ccCccccccch-hhhccCCCCCEEecCCccccCc-ccccc-cccccceeecc-----------CCcCccc-cchhhcCCC
Q 036932          407 MSKMFLKGNIP-AQLLNHGSLNLLSVSENCLSGP-MTSSF-NLSSLEHLYLQ-----------MNSLSGP-IPIALFRSS  471 (790)
Q Consensus       407 l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~-~~~~~-~l~~L~~L~L~-----------~n~l~~~-~p~~~~~~~  471 (790)
                      +++|.+++... ..+..+++|+.|+++ +.+.+. ++... .+++|++|+++           .|.+++. ++.....++
T Consensus       300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  378 (592)
T 3ogk_B          300 LLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ  378 (592)
T ss_dssp             ETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred             cCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence            99999776544 446889999999999 444433 33333 68999999999           3667644 333356689


Q ss_pred             CCcEEeccCCcccccCchhhhc-CccccEEecc----Ccccccc-----CCccccCCCCCCEEEccCCc--CcccCChhH
Q 036932          472 NLITLDLRDNRFSGVIPHQISE-SLTLRFLLLR----GNYLEGQ-----IPNQLCQLRRLGVLDLSHNR--ISGSIPSCL  539 (790)
Q Consensus       472 ~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~----~N~l~~~-----~~~~l~~l~~L~~L~Ls~N~--l~g~~p~~~  539 (790)
                      +|+.|+++.|++++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|+.|++++|.  +++..+..+
T Consensus       379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~  458 (592)
T 3ogk_B          379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI  458 (592)
T ss_dssp             TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred             cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence            9999999999999887777765 8999999996    6778763     44456779999999998654  554333322


Q ss_pred             HHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEEC
Q 036932          540 TIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDL  619 (790)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  619 (790)
                      .                                                                    ..++.|+.|++
T Consensus       459 ~--------------------------------------------------------------------~~~~~L~~L~L  470 (592)
T 3ogk_B          459 G--------------------------------------------------------------------QYSPNVRWMLL  470 (592)
T ss_dssp             H--------------------------------------------------------------------HSCTTCCEEEE
T ss_pred             H--------------------------------------------------------------------HhCccceEeec
Confidence            1                                                                    12568999999


Q ss_pred             CCCcccc-cCChhhhhce-ecceeccCCcccccc-CccccCCCCCCEEEccCCcccccCCcccc-CCCCCCeEecccC
Q 036932          620 SCNQLTG-GIPSEIGDLQ-IRGLNLSYNFLSGSI-PGSFSNLKWIESLDLSHNRLSGQVPPRLT-ELNFLSNFNVSFN  693 (790)
Q Consensus       620 s~N~l~g-~ip~~~~~l~-L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~lsg~ip~~l~-~l~~L~~L~ls~N  693 (790)
                      ++|++++ .++..+..+. |+.|+|++|.+++.. +..+..+++|+.|+|++|++++.-...++ .++.+....+..+
T Consensus       471 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             cCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            9999987 3455556666 999999999998764 44557899999999999999876444443 4565555544443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=7e-28  Score=253.08  Aligned_cols=229  Identities=21%  Similarity=0.184  Sum_probs=169.8

Q ss_pred             CeEEEccCccccccchhhhccCCCCCEEecCCccccCcc--cccc-cccccceeeccCCcCccccchhhcCCCCCcEEec
Q 036932          402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPM--TSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDL  478 (790)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L  478 (790)
                      ++.|++++|.++...+..+..+++|++|++++|.++...  +..+ .+++|++|++++|.++ .+|..+..+++|++|++
T Consensus        30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l  108 (306)
T 2z66_A           30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF  108 (306)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEEC
T ss_pred             CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEEC
Confidence            444444444444322233455566666666666665332  2223 5677777777777776 46666777788888888


Q ss_pred             cCCcccccCc-hhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcc-cCChhHHHHHHhhcccccCCCcc
Q 036932          479 RDNRFSGVIP-HQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISG-SIPSCLTIMLLWVAGNVYLHEPY  556 (790)
Q Consensus       479 ~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~  556 (790)
                      ++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ .+|..+                 
T Consensus       109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------------  171 (306)
T 2z66_A          109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-----------------  171 (306)
T ss_dssp             TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC-----------------
T ss_pred             CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH-----------------
Confidence            8888876554 467778888888888888887777778888888888888888764 234322                 


Q ss_pred             cccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce
Q 036932          557 LQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ  636 (790)
Q Consensus       557 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~  636 (790)
                                                                          ..++.|+.|++++|++++..|..++.+.
T Consensus       172 ----------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  199 (306)
T 2z66_A          172 ----------------------------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLS  199 (306)
T ss_dssp             ----------------------------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ----------------------------------------------------hhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence                                                                2256788888888888877788888776


Q ss_pred             -ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCC-CCCeEecccCcceecCC
Q 036932          637 -IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELN-FLSNFNVSFNNLSGLIP  700 (790)
Q Consensus       637 -L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~-~L~~L~ls~N~l~g~iP  700 (790)
                       |+.|+|++|++++..+..++.+++|+.|||++|++++.+|..+..++ .|++|++++|+++|.++
T Consensus       200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence             99999999999988888899999999999999999999999999984 99999999999998765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.5e-27  Score=250.60  Aligned_cols=250  Identities=20%  Similarity=0.235  Sum_probs=160.5

Q ss_pred             CEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCccccccc--ccChhhhhcCCcCcEEE
Q 036932          256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG--ELPAPLLTGCISLGLLD  333 (790)
Q Consensus       256 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~i~~~~~~~l~~L~~L~  333 (790)
                      +.++.+++.++ .+|..+   .++|++|++++|.++...+..+..+++|++|++++|.+..  .++... ..+++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEE
Confidence            46677777776 666544   3566666776666663333345566666666666666541  112222 2455555555


Q ss_pred             ccCCcCcccccccccCCCCCcEEEcCCcccccccc-cccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccc
Q 036932          334 LSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIE-EGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFL  412 (790)
Q Consensus       334 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l  412 (790)
                      +++|.+.. ++..+..+++|++|++++|.+++..+ ..+..+++                         |++|++++|.+
T Consensus        85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-------------------------L~~L~l~~n~l  138 (306)
T 2z66_A           85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-------------------------LIYLDISHTHT  138 (306)
T ss_dssp             CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT-------------------------CCEEECTTSCC
T ss_pred             CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccC-------------------------CCEEECCCCcC
Confidence            55555542 33334455555555555555443322 23444444                         44444444444


Q ss_pred             cccchhhhccCCCCCEEecCCccccC-cccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchh
Q 036932          413 KGNIPAQLLNHGSLNLLSVSENCLSG-PMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQ  490 (790)
Q Consensus       413 ~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~  490 (790)
                      .+..+..+..+++|++|++++|.+++ ..+..+ .+++|++|++++|++++..|..+..+++|++|++++|++++..+..
T Consensus       139 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  218 (306)
T 2z66_A          139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP  218 (306)
T ss_dssp             EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred             CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh
Confidence            44455555566667777777777765 445555 6778888888888888766778888888888888888888777777


Q ss_pred             hhcCccccEEeccCccccccCCccccCCC-CCCEEEccCCcCcccCC
Q 036932          491 ISESLTLRFLLLRGNYLEGQIPNQLCQLR-RLGVLDLSHNRISGSIP  536 (790)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~g~~p  536 (790)
                      +..+++|+.|++++|++++..|..+..++ +|+.|++++|++++..+
T Consensus       219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            88888888888888888888888888874 88888998888886543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=6.4e-28  Score=258.76  Aligned_cols=274  Identities=20%  Similarity=0.140  Sum_probs=167.5

Q ss_pred             EEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccC
Q 036932          257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSG  336 (790)
Q Consensus       257 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~  336 (790)
                      ..+.+++.++ .+|..+   .++|++|++++|.+++..+..+..+++|++|++++|+++ .++...+.++++|++|++++
T Consensus        35 ~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           35 ICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             EEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCC
Confidence            3455555555 455443   235555555555555444445555555555555555555 33333344555555555555


Q ss_pred             CcCcccccccccCCCCCcEEEcCCcccccccc-cccCCCCCCcEEEcccc-cCcCCCchhhhhccCCCeEEEccCccccc
Q 036932          337 NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIE-EGLSNSNELNELDISNN-LLSGHIPHWIGNFSSDLKVLLMSKMFLKG  414 (790)
Q Consensus       337 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~~~~~L~~L~l~~n~l~~  414 (790)
                      |.+++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+..++. |+.|++++|.+++
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~  188 (353)
T 2z80_A          110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDASDLQS  188 (353)
T ss_dssp             SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-EEEEEEEETTCCE
T ss_pred             CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC-CCEEECCCCCcCc
Confidence            55554444445555556666666555553322 24555566666666665 344444445555555 6666666666665


Q ss_pred             cchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhh---cCCCCCcEEeccCCcccc----c
Q 036932          415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIAL---FRSSNLITLDLRDNRFSG----V  486 (790)
Q Consensus       415 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~---~~~~~L~~L~L~~N~l~~----~  486 (790)
                      ..|..+..+++|++|++++|.++......+ .+++|++|++++|.+++..+..+   .....++.++++++++++    .
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~  268 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ  268 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred             cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence            556666666666666666666654433333 46677777777777765443332   235677888888888775    4


Q ss_pred             CchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932          487 IPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP  536 (790)
Q Consensus       487 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p  536 (790)
                      +|.++..+++|++|++++|+++...+..+..+++|+.|++++|++.+..|
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            67788999999999999999994444446899999999999999998776

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=8.7e-27  Score=258.68  Aligned_cols=248  Identities=22%  Similarity=0.192  Sum_probs=198.9

Q ss_pred             cEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccC
Q 036932          378 NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQM  456 (790)
Q Consensus       378 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~  456 (790)
                      ..++.++..++ .+|..+.   ..++.|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|+|++
T Consensus        57 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            34444444444 3443322   226666666666666666677777788888888888887777777 788888888888


Q ss_pred             CcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCc-cccccCCccccCCCCCCEEEccCCcCcccC
Q 036932          457 NSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN-YLEGQIPNQLCQLRRLGVLDLSHNRISGSI  535 (790)
Q Consensus       457 n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~  535 (790)
                      |++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|++++ +
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence            8888666667888889999999999988777778888999999999984 4554445578889999999999999873 3


Q ss_pred             ChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccce
Q 036932          536 PSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMV  615 (790)
Q Consensus       536 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  615 (790)
                      |. +                                                                     ..++.|+
T Consensus       212 ~~-~---------------------------------------------------------------------~~l~~L~  221 (452)
T 3zyi_A          212 PN-L---------------------------------------------------------------------TPLVGLE  221 (452)
T ss_dssp             CC-C---------------------------------------------------------------------TTCTTCC
T ss_pred             cc-c---------------------------------------------------------------------ccccccc
Confidence            32 0                                                                     2256899


Q ss_pred             EEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCc
Q 036932          616 GLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNN  694 (790)
Q Consensus       616 ~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~  694 (790)
                      .|+|++|++++..|..+..+. |+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..+++|+.|+|++|+
T Consensus       222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence            999999999988899999887 9999999999999999999999999999999999999888899999999999999999


Q ss_pred             ceecCC
Q 036932          695 LSGLIP  700 (790)
Q Consensus       695 l~g~iP  700 (790)
                      +.|.+.
T Consensus       302 ~~CdC~  307 (452)
T 3zyi_A          302 WNCDCD  307 (452)
T ss_dssp             EECSTT
T ss_pred             cCCCCC
Confidence            998765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.8e-27  Score=250.22  Aligned_cols=224  Identities=19%  Similarity=0.233  Sum_probs=159.3

Q ss_pred             CCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeec
Q 036932          375 NELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYL  454 (790)
Q Consensus       375 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L  454 (790)
                      +.++.|++++|.++ .+|..++.++. |++|++++|.++ .+|..+.                       .+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~-L~~L~L~~n~l~-~lp~~~~-----------------------~l~~L~~L~L  134 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSH-LQHMTIDAAGLM-ELPDTMQ-----------------------QFAGLETLTL  134 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTT-CSEEEEESSCCC-CCCSCGG-----------------------GGTTCSEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCC-CCEEECCCCCcc-chhHHHh-----------------------ccCCCCEEEC
Confidence            55666677666666 55555555444 444444444444 3444444                       4555555555


Q ss_pred             cCCcCccccchhhcCCCCCcEEeccCCcccccCchhhh---------cCccccEEeccCccccccCCccccCCCCCCEEE
Q 036932          455 QMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQIS---------ESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLD  525 (790)
Q Consensus       455 ~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~---------~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~  525 (790)
                      ++|+++ .+|..+..+++|++|++++|++.+.+|..+.         .+++|++|++++|+++ .+|..+..+++|+.|+
T Consensus       135 s~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~  212 (328)
T 4fcg_A          135 ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK  212 (328)
T ss_dssp             ESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEE
T ss_pred             CCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEE
Confidence            555555 4555555556666666666555555555443         4788888888888887 7777788888888888


Q ss_pred             ccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceec
Q 036932          526 LSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYEL  605 (790)
Q Consensus       526 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  605 (790)
                      +++|++++ +|..+.                                                                 
T Consensus       213 L~~N~l~~-l~~~l~-----------------------------------------------------------------  226 (328)
T 4fcg_A          213 IRNSPLSA-LGPAIH-----------------------------------------------------------------  226 (328)
T ss_dssp             EESSCCCC-CCGGGG-----------------------------------------------------------------
T ss_pred             ccCCCCCc-Cchhhc-----------------------------------------------------------------
Confidence            88888873 554332                                                                 


Q ss_pred             ccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 036932          606 YNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNF  684 (790)
Q Consensus       606 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~  684 (790)
                          .++.|+.|++++|.+.+.+|..++.+. |+.|+|++|++.+.+|..++++++|+.|||++|.+.|.+|..++.++.
T Consensus       227 ----~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          227 ----HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             ----GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             ----cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence                246788888888888888888888887 888999998888899988999999999999999999999999999999


Q ss_pred             CCeEecccCcce
Q 036932          685 LSNFNVSFNNLS  696 (790)
Q Consensus       685 L~~L~ls~N~l~  696 (790)
                      |+.+++..|.+.
T Consensus       303 L~~l~l~~~~~~  314 (328)
T 4fcg_A          303 NCIILVPPHLQA  314 (328)
T ss_dssp             TCEEECCGGGSC
T ss_pred             ceEEeCCHHHHH
Confidence            999988876554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=9.7e-27  Score=257.34  Aligned_cols=248  Identities=22%  Similarity=0.211  Sum_probs=201.5

Q ss_pred             cEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccC
Q 036932          378 NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQM  456 (790)
Q Consensus       378 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~  456 (790)
                      +.++.+++.++ .+|..+.   .+++.|++++|.+++..+..+.++++|++|++++|.+++..+..+ .+++|++|+|++
T Consensus        46 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           46 SKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             CEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            44555555555 4444332   226666666666666666777777888888888888887777777 788888888888


Q ss_pred             CcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCc-cccccCCccccCCCCCCEEEccCCcCcccC
Q 036932          457 NSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN-YLEGQIPNQLCQLRRLGVLDLSHNRISGSI  535 (790)
Q Consensus       457 n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~  535 (790)
                      |++++..+..|..+++|++|++++|++++..+..+..+++|++|++++| .+....+..+..+++|+.|++++|+++ .+
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence            8888666667888889999999999998877778888999999999985 455445557888999999999999987 44


Q ss_pred             ChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccce
Q 036932          536 PSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMV  615 (790)
Q Consensus       536 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  615 (790)
                      |. +                                                                     ..++.|+
T Consensus       201 ~~-~---------------------------------------------------------------------~~l~~L~  210 (440)
T 3zyj_A          201 PN-L---------------------------------------------------------------------TPLIKLD  210 (440)
T ss_dssp             CC-C---------------------------------------------------------------------TTCSSCC
T ss_pred             cc-c---------------------------------------------------------------------CCCcccC
Confidence            42 0                                                                     2256899


Q ss_pred             EEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCc
Q 036932          616 GLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNN  694 (790)
Q Consensus       616 ~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~  694 (790)
                      .|||++|++++..|..+..+. |+.|+|++|++++..|..|.++++|+.|||++|+|++..+..|..+++|+.|+|++|+
T Consensus       211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            999999999988899998887 9999999999999999999999999999999999999988999999999999999999


Q ss_pred             ceecCC
Q 036932          695 LSGLIP  700 (790)
Q Consensus       695 l~g~iP  700 (790)
                      +.|.+.
T Consensus       291 ~~CdC~  296 (440)
T 3zyj_A          291 WNCNCD  296 (440)
T ss_dssp             EECSST
T ss_pred             ccCCCC
Confidence            998764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.8e-28  Score=256.48  Aligned_cols=247  Identities=21%  Similarity=0.219  Sum_probs=175.1

Q ss_pred             CCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccc-cccchhhhc-------cCCCCCEEecCCccccCcccccc-
Q 036932          374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFL-KGNIPAQLL-------NHGSLNLLSVSENCLSGPMTSSF-  444 (790)
Q Consensus       374 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~-  444 (790)
                      .++|+.+++++|.+  .+|..+...   ++.|++++|.+ ...+|..+.       .+++|++|++++|.+++..|..+ 
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            34555666666666  455544433   55666666666 334555444       56778888888888777666542 


Q ss_pred             --cccccceeeccCCcCccccchhhcCC-----CCCcEEeccCCcccccCchhhhcCccccEEeccCcccccc--CCccc
Q 036932          445 --NLSSLEHLYLQMNSLSGPIPIALFRS-----SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQ--IPNQL  515 (790)
Q Consensus       445 --~l~~L~~L~L~~n~l~~~~p~~~~~~-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~l  515 (790)
                        .+++|++|++++|++++. |..+..+     ++|++|++++|++++..|..+..+++|++|++++|++.+.  .+..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence              677888888888888765 6666655     7888888888888877778888888888888888887665  23344


Q ss_pred             --cCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcce
Q 036932          516 --CQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLV  593 (790)
Q Consensus       516 --~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  593 (790)
                        ..+++|+.|++++|++++ +|.....+.                                                  
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~--------------------------------------------------  224 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMET-PSGVCSALA--------------------------------------------------  224 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCC-HHHHHHHHH--------------------------------------------------
T ss_pred             HhccCCCCCEEECCCCcCcc-hHHHHHHHH--------------------------------------------------
Confidence              778888888888888872 221111000                                                  


Q ss_pred             EEEEeeccceecccCcccccceEEECCCCcccccCC-hhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcc
Q 036932          594 KVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIP-SEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRL  671 (790)
Q Consensus       594 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l  671 (790)
                                     ..++.|+.||+++|++++.+| ..+..+. |+.|+|++|+|+ .+|..+.  ++|+.|||++|+|
T Consensus       225 ---------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          225 ---------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL  286 (312)
T ss_dssp             ---------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC
T ss_pred             ---------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC
Confidence                           124678888888888887775 3344444 888999999988 7787776  8899999999999


Q ss_pred             cccCCccccCCCCCCeEecccCccee
Q 036932          672 SGQVPPRLTELNFLSNFNVSFNNLSG  697 (790)
Q Consensus       672 sg~ip~~l~~l~~L~~L~ls~N~l~g  697 (790)
                      ++. |. +..+++|++|++++|++++
T Consensus       287 ~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          287 DRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            876 65 8888899999999998875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3.9e-28  Score=255.97  Aligned_cols=263  Identities=19%  Similarity=0.173  Sum_probs=193.8

Q ss_pred             EEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCcc
Q 036932          356 LYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENC  435 (790)
Q Consensus       356 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  435 (790)
                      .+++.+.+.......+..+++|++|++++|.+++..|..+..++. |+.|++++|.+++..+  +..+++|++|++++|.
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTT-CCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCc-CCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence            344444444333333444455566666666655555555555555 6666666666554443  6667778888888887


Q ss_pred             ccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccc
Q 036932          436 LSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQL  515 (790)
Q Consensus       436 l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l  515 (790)
                      +++..+    .++|++|++++|++++..+..   +++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+
T Consensus        92 l~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  164 (317)
T 3o53_A           92 VQELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL  164 (317)
T ss_dssp             EEEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred             cccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence            775442    378888888888888654443   5678999999999988777788888999999999999988777766


Q ss_pred             c-CCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceE
Q 036932          516 C-QLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVK  594 (790)
Q Consensus       516 ~-~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (790)
                      . .+++|+.|++++|++++. |..                                                        
T Consensus       165 ~~~l~~L~~L~L~~N~l~~~-~~~--------------------------------------------------------  187 (317)
T 3o53_A          165 AASSDTLEHLNLQYNFIYDV-KGQ--------------------------------------------------------  187 (317)
T ss_dssp             GGGTTTCCEEECTTSCCCEE-ECC--------------------------------------------------------
T ss_pred             hhccCcCCEEECCCCcCccc-ccc--------------------------------------------------------
Confidence            4 689999999999998732 210                                                        


Q ss_pred             EEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCccc-
Q 036932          595 VEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLS-  672 (790)
Q Consensus       595 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~ls-  672 (790)
                                    ..++.|+.|+|++|++++ +|..+..+. |+.|+|++|+++ .+|..++.+++|+.||+++|.++ 
T Consensus       188 --------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          188 --------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             --------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred             --------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence                          115688999999999984 555677776 999999999999 57888999999999999999999 


Q ss_pred             ccCCccccCCCCCCeEeccc-CcceecCCC
Q 036932          673 GQVPPRLTELNFLSNFNVSF-NNLSGLIPD  701 (790)
Q Consensus       673 g~ip~~l~~l~~L~~L~ls~-N~l~g~iP~  701 (790)
                      +.+|..+..++.|+.+++++ +.++|..|.
T Consensus       252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             cCHHHHHhccccceEEECCCchhccCCchh
Confidence            88999999999999999984 467776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.7e-26  Score=238.26  Aligned_cols=226  Identities=23%  Similarity=0.266  Sum_probs=155.2

Q ss_pred             cccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccc
Q 036932          306 FLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNN  385 (790)
Q Consensus       306 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  385 (790)
                      +++.+++.++ .+|...   .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        15 ~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            4555555555 555432   346666666666666655556666667777777777666666666666777777777777


Q ss_pred             c-CcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCcccc
Q 036932          386 L-LSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPI  463 (790)
Q Consensus       386 ~-l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~  463 (790)
                      + +....|..+..++. |+.|++++|.+++..|..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..
T Consensus        91 ~~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGR-LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TTCCCCCTTTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCccccCHHHhcCCcC-CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            5 55444556666655 6666666666666666666677777777777777776666655 6777777777777777555


Q ss_pred             chhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932          464 PIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP  536 (790)
Q Consensus       464 p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p  536 (790)
                      +..+..+++|+.|++++|++++..|.++..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            5567777778888888888777777777777778888888887776666667777788888888887775444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.7e-26  Score=242.66  Aligned_cols=224  Identities=20%  Similarity=0.219  Sum_probs=146.4

Q ss_pred             ccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEc
Q 036932          303 ALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDI  382 (790)
Q Consensus       303 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  382 (790)
                      +++.|++++|.+. .+|..++ .+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            3444444444443 4443322 2444444444444444 34444444455555555555554 34444555555555555


Q ss_pred             ccccCcCCCchhhhh---------ccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceee
Q 036932          383 SNNLLSGHIPHWIGN---------FSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLY  453 (790)
Q Consensus       383 s~n~l~~~~p~~~~~---------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~  453 (790)
                      ++|.+.+.+|..+..         ++. |+.|++++|.++ .+|..+..+++|++|++++|.+++..+....+++|++|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVN-LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTT-CCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCC-CCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence            555554455544432         555 667777766666 566667777778888888887776544433778888888


Q ss_pred             ccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCc
Q 036932          454 LQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       454 L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  532 (790)
                      +++|++.+.+|..+..+++|+.|++++|++.+.+|.++..+++|++|++++|.+.+.+|..+.++++|+.+++..+.+.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888888877665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=4.2e-28  Score=279.82  Aligned_cols=83  Identities=17%  Similarity=0.125  Sum_probs=42.0

Q ss_pred             ccceEEECCCCcccccCChhhhh-ce-ecceeccCCccccccCccc-cCCCCCCEEEccCCcccccCCcc-ccCCCCCCe
Q 036932          612 KYMVGLDLSCNQLTGGIPSEIGD-LQ-IRGLNLSYNFLSGSIPGSF-SNLKWIESLDLSHNRLSGQVPPR-LTELNFLSN  687 (790)
Q Consensus       612 ~~L~~L~Ls~N~l~g~ip~~~~~-l~-L~~L~Ls~N~l~g~ip~~l-~~l~~L~~LdLs~N~lsg~ip~~-l~~l~~L~~  687 (790)
                      +.|+.|++++ .+++..+..++. +. |+.|+|++|.+++..+..+ .++++|+.|+|++|.+++..+.. ...+++|++
T Consensus       432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  510 (594)
T 2p1m_B          432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS  510 (594)
T ss_dssp             TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred             CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence            4555555544 444444444443 33 5555555555554444443 44555556666655554433332 223555555


Q ss_pred             EecccCcc
Q 036932          688 FNVSFNNL  695 (790)
Q Consensus       688 L~ls~N~l  695 (790)
                      |++++|++
T Consensus       511 L~l~~~~~  518 (594)
T 2p1m_B          511 LWMSSCSV  518 (594)
T ss_dssp             EEEESSCC
T ss_pred             EeeeCCCC
Confidence            66655555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4e-27  Score=247.63  Aligned_cols=247  Identities=21%  Similarity=0.210  Sum_probs=204.2

Q ss_pred             hcccccEecccCCccccccchhhhcccccccccCcccccc-cccChhhh------hcCCcCcEEEccCCcCcccccccc-
Q 036932          276 ILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFS-GELPAPLL------TGCISLGLLDLSGNNFYGQIFPKY-  347 (790)
Q Consensus       276 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~i~~~~~------~~l~~L~~L~L~~n~l~~~~~~~~-  347 (790)
                      ..++|+++++++|.+  .+|..+...  |+.|++++|.+. +.+|....      .++++|++|++++|.+++.+|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            457788999999988  677777654  888999999884 45665432      258899999999999998888876 


Q ss_pred             -cCCCCCcEEEcCCcccccccccccCCC-----CCCcEEEcccccCcCCCchhhhhccCCCeEEEccCcccccc--chhh
Q 036932          348 -MNLTQLEFLYLENNKFSGKIEEGLSNS-----NELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGN--IPAQ  419 (790)
Q Consensus       348 -~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~--~~~~  419 (790)
                       ..+++|++|++++|.+++. |..+..+     ++|++|++++|++.+..|..++.++. |+.|++++|++.+.  .+..
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA-LSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS-CCEEECCSCTTCHHHHHHHH
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC-CCEEECCCCCcCcchHHHHH
Confidence             7899999999999999876 7766665     89999999999999887788888888 99999999998765  3445


Q ss_pred             h--ccCCCCCEEecCCccccCcc--c-ccc-cccccceeeccCCcCccccc-hhhcCCCCCcEEeccCCcccccCchhhh
Q 036932          420 L--LNHGSLNLLSVSENCLSGPM--T-SSF-NLSSLEHLYLQMNSLSGPIP-IALFRSSNLITLDLRDNRFSGVIPHQIS  492 (790)
Q Consensus       420 ~--~~~~~L~~L~l~~n~l~~~~--~-~~~-~l~~L~~L~L~~n~l~~~~p-~~~~~~~~L~~L~L~~N~l~~~~p~~~~  492 (790)
                      +  ..+++|++|++++|.+++..  + ..+ .+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|.++.
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence            5  78899999999999998532  2 233 67899999999999998775 45667899999999999998 6777776


Q ss_pred             cCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcc
Q 036932          493 ESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISG  533 (790)
Q Consensus       493 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g  533 (790)
                        ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus       274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence              8999999999999976 65 8899999999999999985

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.9e-26  Score=237.07  Aligned_cols=223  Identities=22%  Similarity=0.201  Sum_probs=127.6

Q ss_pred             CEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEcc
Q 036932          256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLS  335 (790)
Q Consensus       256 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~  335 (790)
                      ++++.+++.++ .+|..+   .++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence            45666666666 566543   356677777777766555556666666666666666665 3433334566666666666


Q ss_pred             CCc-CcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccc
Q 036932          336 GNN-FYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG  414 (790)
Q Consensus       336 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~  414 (790)
                      +|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..++. |+.|++++|.+++
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~  167 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRISS  167 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC-ccEEECCCCcccc
Confidence            665 55444555666666666666666666555666666666666666666666444444444444 5555555555544


Q ss_pred             cchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCccc
Q 036932          415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFS  484 (790)
Q Consensus       415 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~  484 (790)
                      ..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            444445555555555555555555444444 4555555555555555444444555555555555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.3e-25  Score=247.17  Aligned_cols=252  Identities=19%  Similarity=0.187  Sum_probs=197.3

Q ss_pred             CCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEc
Q 036932          255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDL  334 (790)
Q Consensus       255 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L  334 (790)
                      .+.++.++..++ .+|..+   .+++++|++++|.+++..|..|.++++|++|++++|.+. .++...+.++++|++|+|
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence            467888888887 788765   367888888888888777777888888888888888777 555555667777777777


Q ss_pred             cCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccc
Q 036932          335 SGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG  414 (790)
Q Consensus       335 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~  414 (790)
                      ++|.++...+..|..+++|++|++++|.++...+..|..+++|+.|++++|...+.+                       
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i-----------------------  187 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI-----------------------  187 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----------------------
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-----------------------
Confidence            777777666666667777777777777776655556666677777776664322122                       


Q ss_pred             cchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcC
Q 036932          415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISES  494 (790)
Q Consensus       415 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l  494 (790)
                       .+..+..+++|++|++++|.+++. +....+++|++|++++|++++..|..|..+++|+.|++++|++++..+.++..+
T Consensus       188 -~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          188 -SEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             -CTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             -ChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence             223456677788888888888764 333378899999999999998889999999999999999999999999999999


Q ss_pred             ccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932          495 LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP  536 (790)
Q Consensus       495 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p  536 (790)
                      ++|+.|+|++|++++..+..+..+++|+.|+|++|++.....
T Consensus       266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            999999999999998888889999999999999999986544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=9.1e-27  Score=259.82  Aligned_cols=233  Identities=21%  Similarity=0.190  Sum_probs=166.9

Q ss_pred             CCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeecc
Q 036932          376 ELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQ  455 (790)
Q Consensus       376 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~  455 (790)
                      +|++|++++|.+++..|..+..++. |+.|++++|.+++..|  +..+++|++|++++|.+++..+    .++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence            4555555555555544455555554 5555555555554444  5666777777777777765443    2678888888


Q ss_pred             CCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCcccc-CCCCCCEEEccCCcCccc
Q 036932          456 MNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLC-QLRRLGVLDLSHNRISGS  534 (790)
Q Consensus       456 ~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~l~~L~~L~Ls~N~l~g~  534 (790)
                      +|.+++..+.   .+++|+.|++++|++++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            8888765543   346788888888888887777888888888888888888887777775 688888888888888743


Q ss_pred             CChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccc
Q 036932          535 IPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYM  614 (790)
Q Consensus       535 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  614 (790)
                      .+.                                                                       ..++.|
T Consensus       185 ~~~-----------------------------------------------------------------------~~l~~L  193 (487)
T 3oja_A          185 KGQ-----------------------------------------------------------------------VVFAKL  193 (487)
T ss_dssp             ECC-----------------------------------------------------------------------CCCTTC
T ss_pred             ccc-----------------------------------------------------------------------ccCCCC
Confidence            110                                                                       124678


Q ss_pred             eEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCccc-ccCCccccCCCCCCeEecc
Q 036932          615 VGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLS-GQVPPRLTELNFLSNFNVS  691 (790)
Q Consensus       615 ~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~ls-g~ip~~l~~l~~L~~L~ls  691 (790)
                      +.|||++|++++ +|+.++.+. |+.|+|++|.|++ +|..++.+++|+.||+++|.++ +.+|..+..++.|+.++++
T Consensus       194 ~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          194 KTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            888888888885 444576666 8888888888885 6777888888888888888887 7777888888888777776

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.8e-27  Score=249.49  Aligned_cols=255  Identities=19%  Similarity=0.179  Sum_probs=149.9

Q ss_pred             EEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccC
Q 036932          257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSG  336 (790)
Q Consensus       257 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~  336 (790)
                      ..+++.+.+. ..+..++..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+   +..+++|++|++++
T Consensus        14 i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           14 IEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNN   89 (317)
T ss_dssp             EESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCS
T ss_pred             Eeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcC
Confidence            4445555554 4444455556677777777777776666677777777777777777764333   45677777777777


Q ss_pred             CcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccc
Q 036932          337 NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNI  416 (790)
Q Consensus       337 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~  416 (790)
                      |.+++..     ..++|++|++++|.+++..+..   +++|++|++++|++++..+..+..++. |+.|++++|.+++..
T Consensus        90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCEEE
T ss_pred             Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCccc
Confidence            7765432     2367777777777776554432   456777777777776555555555555 666666666666555


Q ss_pred             hhhhc-cCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCc
Q 036932          417 PAQLL-NHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESL  495 (790)
Q Consensus       417 ~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~  495 (790)
                      +..+. .+++|++|++++|.+++... ...+++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..++
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~  237 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ  237 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred             HHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence            55443 45566666666666554422 1235555555555555553 3334555555555555555555 2344455555


Q ss_pred             cccEEeccCcccc-ccCCccccCCCCCCEEEcc
Q 036932          496 TLRFLLLRGNYLE-GQIPNQLCQLRRLGVLDLS  527 (790)
Q Consensus       496 ~L~~L~L~~N~l~-~~~~~~l~~l~~L~~L~Ls  527 (790)
                      +|+.|++++|.+. +.+|.++..+++|+.++++
T Consensus       238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            5555555555555 4445555555555555555

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2.7e-25  Score=245.68  Aligned_cols=252  Identities=18%  Similarity=0.192  Sum_probs=199.4

Q ss_pred             CCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEc
Q 036932          255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDL  334 (790)
Q Consensus       255 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L  334 (790)
                      .+.++.++..++ .+|..+   .++++.|++++|.+++..+..|.++++|++|+|++|.+. .++...|.++++|++|+|
T Consensus        45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence            567888888888 888766   367888888888888777778888888888888888887 666666677777888888


Q ss_pred             cCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccc
Q 036932          335 SGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG  414 (790)
Q Consensus       335 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~  414 (790)
                      ++|.++...+..|..+++|++|++++|.++...+..|..+++|++|++++|...+.+                       
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i-----------------------  176 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI-----------------------  176 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----------------------
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee-----------------------
Confidence            888777666666777777777777777777666666777777777777764332222                       


Q ss_pred             cchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcC
Q 036932          415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISES  494 (790)
Q Consensus       415 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l  494 (790)
                       .+..+..+++|++|++++|.++.. |....+++|++|+|++|++++..|..|..+++|+.|++++|++++..+.++..+
T Consensus       177 -~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  254 (440)
T 3zyj_A          177 -SEGAFEGLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL  254 (440)
T ss_dssp             -CTTTTTTCSSCCEEECTTSCCSSC-CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred             -CcchhhcccccCeecCCCCcCccc-cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence             223455666777778887777743 333378899999999999998889999999999999999999999999999999


Q ss_pred             ccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932          495 LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP  536 (790)
Q Consensus       495 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p  536 (790)
                      ++|+.|+|++|++++..+..+..+++|+.|+|++|++.....
T Consensus       255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            999999999999998888889999999999999999986543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=9.1e-25  Score=248.35  Aligned_cols=195  Identities=26%  Similarity=0.285  Sum_probs=111.4

Q ss_pred             cccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEE
Q 036932          302 KALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELD  381 (790)
Q Consensus       302 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  381 (790)
                      .+++.|++++|.++ .+|..+.   ++|++|++++|.++. +|.   .+++|++|++++|++++ +|.   .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence            35778888888887 7776543   678888888887774 333   46777888888887763 443   467777777


Q ss_pred             cccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCcc
Q 036932          382 ISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSG  461 (790)
Q Consensus       382 Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~  461 (790)
                      +++|++++ +|.   .... |+.|++++|.+++ +|..   +++|++|++++|.+++...   .+++|+.|++++|.+++
T Consensus       108 Ls~N~l~~-l~~---~l~~-L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTH-LPA---LPSG-LCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCC-CCC---CCTT-CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCC-CCC---CCCC-cCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC
Confidence            77777773 333   2223 6666666666653 3332   2556666666665554322   13455555555555553


Q ss_pred             ccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCc
Q 036932          462 PIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       462 ~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  532 (790)
                       +|   ..+++|+.|++++|++++ +|..   .++|+.|++++|.++ .+|..   +++|+.|++++|+++
T Consensus       176 -l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~  234 (622)
T 3g06_A          176 -LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT  234 (622)
T ss_dssp             -CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS
T ss_pred             -Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccC
Confidence             33   234555555555555553 2221   244555555555555 22221   245555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=4.2e-27  Score=271.45  Aligned_cols=439  Identities=16%  Similarity=0.089  Sum_probs=286.2

Q ss_pred             eEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcC---c-----------hhHhhCCCCCcEEeccCCcccccccCCC
Q 036932          184 KVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDF---P-----------TWVLRNNTKLEALFLTNNSFTGNLQLPK  249 (790)
Q Consensus       184 ~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~i---p-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~  249 (790)
                      ..+++..+.....+..+..+++|+.|+++++.....+   |           ..+...+++|++|++++|.+++.....+
T Consensus        46 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l  125 (594)
T 2p1m_B           46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI  125 (594)
T ss_dssp             CEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred             eEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence            3555555544333445667888999999987532111   1           1234467888889888887765432223


Q ss_pred             C-CCCCCCEEEeecC-CCCccCChhHHhhcccccEecccCCccccccchhhh----cccccccccCcccc--cccccChh
Q 036932          250 T-KHDFLHHLDVSNN-NLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIG----EMKALIFLRLPKNN--FSGELPAP  321 (790)
Q Consensus       250 ~-~~~~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~----~l~~L~~L~Ls~n~--l~~~i~~~  321 (790)
                      . .+++|++|++++| .+++.....+...+++|++|++++|.+++..+.++.    .+++|++|++++|.  +.......
T Consensus       126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (594)
T 2p1m_B          126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER  205 (594)
T ss_dssp             HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred             HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence            2 4778888888888 454222233444578888888888887765555554    45688888888886  22111122


Q ss_pred             hhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCc-------ccccccccccCCCCCCcEE-EcccccCcCCCch
Q 036932          322 LLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENN-------KFSGKIEEGLSNSNELNEL-DISNNLLSGHIPH  393 (790)
Q Consensus       322 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~p~  393 (790)
                      +...+++|++|++++|...+.++..+..+++|++|++..+       .+.+ ++..+..+++|+.+ .+.+... +.++.
T Consensus       206 l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~  283 (594)
T 2p1m_B          206 LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPA  283 (594)
T ss_dssp             HHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGG
T ss_pred             HHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHH
Confidence            3345788888888888333336666777888888885544       3332 33466778888888 3443322 24555


Q ss_pred             hhhhccCCCeEEEccCccccccch-hhhccCCCCCEEecCCccccCcccccc--cccccceeecc---------CCcCcc
Q 036932          394 WIGNFSSDLKVLLMSKMFLKGNIP-AQLLNHGSLNLLSVSENCLSGPMTSSF--NLSSLEHLYLQ---------MNSLSG  461 (790)
Q Consensus       394 ~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~L~---------~n~l~~  461 (790)
                      .+..++. |+.|++++|.+++... ..+..+++|+.|++++| +++.....+  .+++|++|++.         .+.+++
T Consensus       284 ~~~~~~~-L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~  361 (594)
T 2p1m_B          284 VYSVCSR-LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE  361 (594)
T ss_dssp             GHHHHTT-CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred             HHHhhCC-CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence            5556666 8888888888765433 33557888888888887 432222222  57888888883         345554


Q ss_pred             ccchhhc-CCCCCcEEeccCCcccccCchhhh-cCccccEEecc--C----cccccc-----CCccccCCCCCCEEEccC
Q 036932          462 PIPIALF-RSSNLITLDLRDNRFSGVIPHQIS-ESLTLRFLLLR--G----NYLEGQ-----IPNQLCQLRRLGVLDLSH  528 (790)
Q Consensus       462 ~~p~~~~-~~~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~--~----N~l~~~-----~~~~l~~l~~L~~L~Ls~  528 (790)
                      .....+. .+++|+.|+++.|++++..+..+. .+++|+.|+++  +    +.+++.     ++..+..+++|+.|++++
T Consensus       362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~  441 (594)
T 2p1m_B          362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG  441 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence            3333333 478888888888888766555554 57888888888  4    455521     222356678888888876


Q ss_pred             CcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccC
Q 036932          529 NRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNG  608 (790)
Q Consensus       529 N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  608 (790)
                       .+++..+..++.                                                                   
T Consensus       442 -~l~~~~~~~l~~-------------------------------------------------------------------  453 (594)
T 2p1m_B          442 -LLTDKVFEYIGT-------------------------------------------------------------------  453 (594)
T ss_dssp             -SCCHHHHHHHHH-------------------------------------------------------------------
T ss_pred             -cccHHHHHHHHH-------------------------------------------------------------------
Confidence             555332222211                                                                   


Q ss_pred             cccccceEEECCCCcccccCChhh-hhce-ecceeccCCccccccCc-cccCCCCCCEEEccCCcccccCCccc-cCCCC
Q 036932          609 SNIKYMVGLDLSCNQLTGGIPSEI-GDLQ-IRGLNLSYNFLSGSIPG-SFSNLKWIESLDLSHNRLSGQVPPRL-TELNF  684 (790)
Q Consensus       609 ~~l~~L~~L~Ls~N~l~g~ip~~~-~~l~-L~~L~Ls~N~l~g~ip~-~l~~l~~L~~LdLs~N~lsg~ip~~l-~~l~~  684 (790)
                       .++.|+.|+|++|.+++..+..+ ..+. |+.|+|++|.+++..+. .+..+++|+.|++++|+++......+ ..++.
T Consensus       454 -~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~  532 (594)
T 2p1m_B          454 -YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPK  532 (594)
T ss_dssp             -HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTT
T ss_pred             -hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCC
Confidence             15689999999999987766666 5565 99999999999876655 34558999999999999976655555 45677


Q ss_pred             CCeEecccCcc
Q 036932          685 LSNFNVSFNNL  695 (790)
Q Consensus       685 L~~L~ls~N~l  695 (790)
                      |+...+..+.-
T Consensus       533 l~i~~~~~~~~  543 (594)
T 2p1m_B          533 LNVEVIDERGA  543 (594)
T ss_dssp             EEEEEECSSSC
T ss_pred             CEEEEecCCCc
Confidence            76666655543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1e-24  Score=225.19  Aligned_cols=208  Identities=24%  Similarity=0.222  Sum_probs=162.2

Q ss_pred             CCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEecc
Q 036932          425 SLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLR  503 (790)
Q Consensus       425 ~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  503 (790)
                      ++++|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            57777777777776666555 67777777777777776556677778888888888888887777778888888888888


Q ss_pred             CccccccCCccccCCCCCCEEEccCCcCcc-cCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccC
Q 036932          504 GNYLEGQIPNQLCQLRRLGVLDLSHNRISG-SIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYG  582 (790)
Q Consensus       504 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  582 (790)
                      +|.+++..+..+..+++|+.|++++|++++ .+|..+..                                         
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-----------------------------------------  147 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-----------------------------------------  147 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence            888877666677888888888888888874 24554322                                         


Q ss_pred             CCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ec----ceeccCCccccccCccccC
Q 036932          583 NGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IR----GLNLSYNFLSGSIPGSFSN  657 (790)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~----~L~Ls~N~l~g~ip~~l~~  657 (790)
                                                  ++.|+.|++++|++++..+..+..+. ++    .|++++|++++..+..+..
T Consensus       148 ----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~  199 (276)
T 2z62_A          148 ----------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE  199 (276)
T ss_dssp             ----------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS
T ss_pred             ----------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC
Confidence                                        45788888888888877667776665 55    7899999999766665554


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCC
Q 036932          658 LKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK  702 (790)
Q Consensus       658 l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  702 (790)
                       .+|+.|||++|+|++..+..+..+++|++|++++|+++|.+|.-
T Consensus       200 -~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          200 -IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             -CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             -CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence             58999999999999888878899999999999999999998854

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=3.7e-24  Score=243.32  Aligned_cols=267  Identities=27%  Similarity=0.262  Sum_probs=164.2

Q ss_pred             cceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEee
Q 036932          182 QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVS  261 (790)
Q Consensus       182 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls  261 (790)
                      +++.|++++|.++.+|..+.  ++|+.|++++|.++ .+|.    .+++|++|++++|.+++..   . .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp---~-~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLP---V-LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCC---C-CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCC---C-CCCCCCEEECc
Confidence            35666667777777766554  57777777777776 5664    4567777777777766532   2 55677777777


Q ss_pred             cCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcc
Q 036932          262 NNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG  341 (790)
Q Consensus       262 ~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~  341 (790)
                      +|.++ .+|.    .+++|+.|++++|.+++ +|..   +++|++|++++|+++ .+|.    .+++|+.|++++|.+++
T Consensus       110 ~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          110 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             SCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred             CCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCC
Confidence            77776 4554    25667777777777763 4432   366777777777766 4543    34567777777777765


Q ss_pred             cccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhc
Q 036932          342 QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL  421 (790)
Q Consensus       342 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  421 (790)
                      . |   ..+++|+.|++++|.+++ +|..   .++|+.|++++|.++ .+|..+   +. |+.|++++|.+++ +|   .
T Consensus       176 l-~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~---~~-L~~L~Ls~N~L~~-lp---~  238 (622)
T 3g06_A          176 L-P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---SG-LKELIVSGNRLTS-LP---V  238 (622)
T ss_dssp             C-C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC---TT-CCEEECCSSCCSC-CC---C
T ss_pred             C-c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC---CC-CCEEEccCCccCc-CC---C
Confidence            2 2   345667777777777664 3322   356777777777666 344321   22 6666666666654 33   3


Q ss_pred             cCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcC
Q 036932          422 NHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISES  494 (790)
Q Consensus       422 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l  494 (790)
                      .+++|+.|++++|.++...+   .+++|++|++++|+++ .+|..+..+++|+.|+|++|++++..|..+..+
T Consensus       239 ~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          239 LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            34566666666666664332   3456666666666666 556666666666666666666666655555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=4.4e-25  Score=246.17  Aligned_cols=234  Identities=20%  Similarity=0.186  Sum_probs=135.4

Q ss_pred             ccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEE
Q 036932          278 QKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLY  357 (790)
Q Consensus       278 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  357 (790)
                      ++|++|++++|.+++..|..++.+++|++|+|++|.+++..|   +..+++|++|++++|.+++..+     .++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            367777777777776666677777777777777777764443   4566777777777776664322     26677777


Q ss_pred             cCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhc-cCCCCCEEecCCccc
Q 036932          358 LENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL-NHGSLNLLSVSENCL  436 (790)
Q Consensus       358 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l  436 (790)
                      +++|.+++..+.   .+++|+.|++++|.+++..|..+..++. |+.|++++|.+++..|..+. .+++|++|++++|.+
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSS-EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCC-CCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            777776655443   2456666666666666655656665555 66666666666655555554 455666666666665


Q ss_pred             cCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCcccc-ccCCccc
Q 036932          437 SGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLE-GQIPNQL  515 (790)
Q Consensus       437 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~~~~l  515 (790)
                      ++..+. ..+++|++|+|++|.+++ +|..+..+++|+.|++++|++++ +|.++..+++|+.|++++|.+. +.+|.++
T Consensus       182 ~~~~~~-~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          182 YDVKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             CEEECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             cccccc-ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            544221 135555555555555553 33335555555555555555553 3444455555555555555554 3444444


Q ss_pred             cCCCCCCEEEc
Q 036932          516 CQLRRLGVLDL  526 (790)
Q Consensus       516 ~~l~~L~~L~L  526 (790)
                      ..++.|+.+++
T Consensus       259 ~~l~~L~~l~~  269 (487)
T 3oja_A          259 SKNQRVQTVAK  269 (487)
T ss_dssp             TTCHHHHHHHH
T ss_pred             HhCCCCcEEec
Confidence            44444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=4.3e-23  Score=212.04  Aligned_cols=206  Identities=23%  Similarity=0.231  Sum_probs=166.4

Q ss_pred             CCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccC
Q 036932          425 SLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG  504 (790)
Q Consensus       425 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  504 (790)
                      ..+.++++++.++..+.. + .+++++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~-~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSN-I-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSC-C-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCC-C-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            466777777777753322 2 25688888888888866666788888888888888888866666678888888888888


Q ss_pred             ccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCC
Q 036932          505 NYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNG  584 (790)
Q Consensus       505 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  584 (790)
                      |++++..+..+..+++|+.|++++|++++..|..+                                             
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------------------------------------------  129 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF---------------------------------------------  129 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT---------------------------------------------
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh---------------------------------------------
Confidence            88887777778888889999999888875444322                                             


Q ss_pred             cccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCE
Q 036932          585 VYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIES  663 (790)
Q Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~  663 (790)
                                              ..++.|+.|+|++|++++..+..++.+. |+.|+|++|++++..|..|+++++|+.
T Consensus       130 ------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          130 ------------------------DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT  185 (270)
T ss_dssp             ------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             ------------------------CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence                                    1256788899999998865555677776 999999999999888888999999999


Q ss_pred             EEccCCcccccCCccccCCCCCCeEecccCcceecCCC
Q 036932          664 LDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD  701 (790)
Q Consensus       664 LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~  701 (790)
                      |||++|+|++..+..+..+++|+.|++++|++.+.++.
T Consensus       186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            99999999988888899999999999999999988763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=5.4e-23  Score=212.22  Aligned_cols=222  Identities=19%  Similarity=0.251  Sum_probs=132.4

Q ss_pred             EEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccC
Q 036932          257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSG  336 (790)
Q Consensus       257 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~  336 (790)
                      ..+..+..+. .+|..+   .++|++|++++|.+++..+..+..+++|++|++++|++. .++...+..+++|++|++++
T Consensus        11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred             eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence            3444455555 566544   246777777777777655556777777777777777776 55555556667777777777


Q ss_pred             CcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCC-CchhhhhccCCCeEEEccCcccccc
Q 036932          337 NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGH-IPHWIGNFSSDLKVLLMSKMFLKGN  415 (790)
Q Consensus       337 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~~~~~L~~L~l~~n~l~~~  415 (790)
                      |.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..++                
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~----------------  149 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT----------------  149 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT----------------
T ss_pred             CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC----------------
Confidence            777666666666677777777777776655555566666677777766666542 344444444                


Q ss_pred             chhhhccCCCCCEEecCCccccCcccccc-cccccc----eeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchh
Q 036932          416 IPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLE----HLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQ  490 (790)
Q Consensus       416 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~----~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~  490 (790)
                               +|++|++++|.+++..+..+ .+++|+    .|++++|.+++. +.......+|+.|++++|++++..+..
T Consensus       150 ---------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~  219 (276)
T 2z62_A          150 ---------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPDGI  219 (276)
T ss_dssp             ---------TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE-CTTSSCSCCEEEEECCSSCCSCCCTTT
T ss_pred             ---------CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc-CccccCCCcccEEECCCCceeecCHhH
Confidence                     44444444444444433333 333333    556666666533 223333345666666666666555555


Q ss_pred             hhcCccccEEeccCccccc
Q 036932          491 ISESLTLRFLLLRGNYLEG  509 (790)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~~  509 (790)
                      +..+++|+.|++++|.+++
T Consensus       220 ~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          220 FDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             TTTCCSCCEEECCSSCBCC
T ss_pred             hcccccccEEEccCCcccc
Confidence            5666666666666666653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=3.9e-24  Score=229.82  Aligned_cols=27  Identities=15%  Similarity=0.209  Sum_probs=16.6

Q ss_pred             ccccCCCCCCEEEccCCcccccCCccc
Q 036932          653 GSFSNLKWIESLDLSHNRLSGQVPPRL  679 (790)
Q Consensus       653 ~~l~~l~~L~~LdLs~N~lsg~ip~~l  679 (790)
                      ..+.++++|+.||+++|++.+..|..+
T Consensus       278 ~~~~~l~~L~~LdL~~N~l~~~~~~~~  304 (362)
T 3goz_A          278 AAFPNIQKIILVDKNGKEIHPSHSIPI  304 (362)
T ss_dssp             TTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred             HHhccCCceEEEecCCCcCCCcchHHH
Confidence            345566667777777777766544443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=4.8e-24  Score=229.14  Aligned_cols=259  Identities=22%  Similarity=0.180  Sum_probs=164.2

Q ss_pred             EEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCC-CCCEEecCCc
Q 036932          356 LYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHG-SLNLLSVSEN  434 (790)
Q Consensus       356 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n  434 (790)
                      ++++.|.+++.+|..+...++|++|++++|.+++..+..+.                     ..+..++ +|++|++++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~---------------------~~l~~~~~~L~~L~Ls~N   61 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELI---------------------QAFANTPASVTSLNLSGN   61 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH---------------------HHHHTCCTTCCEEECCSS
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHH---------------------HHHHhCCCceeEEECcCC
Confidence            45666666666665555555566666666666544441111                     3344444 5555555555


Q ss_pred             cccCcccccc-cc-----cccceeeccCCcCccccchh----hcCC-CCCcEEeccCCcccccCchhhhc-----Ccccc
Q 036932          435 CLSGPMTSSF-NL-----SSLEHLYLQMNSLSGPIPIA----LFRS-SNLITLDLRDNRFSGVIPHQISE-----SLTLR  498 (790)
Q Consensus       435 ~l~~~~~~~~-~l-----~~L~~L~L~~n~l~~~~p~~----~~~~-~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~  498 (790)
                      .+++..+..+ .+     ++|++|++++|.+++..+..    +..+ ++|++|++++|++++..+..+..     .++|+
T Consensus        62 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  141 (362)
T 3goz_A           62 SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT  141 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred             CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence            5555444433 22     56666666666666544443    3333 67777777777777665554432     25777


Q ss_pred             EEeccCccccccC----CccccCCC-CCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccccccccc
Q 036932          499 FLLLRGNYLEGQI----PNQLCQLR-RLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYN  573 (790)
Q Consensus       499 ~L~L~~N~l~~~~----~~~l~~l~-~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  573 (790)
                      +|++++|.+++..    +..+..++ +|+.|+|++|++++..+..++...                              
T Consensus       142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------  191 (362)
T 3goz_A          142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------  191 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH------------------------------
T ss_pred             EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH------------------------------
Confidence            7777777777433    33344554 888888888888766665554321                              


Q ss_pred             ccccccccCCCcccccCcceEEEEeeccceecccCccc-ccceEEECCCCccccc----CChhhhhc--eecceeccCCc
Q 036932          574 STFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNI-KYMVGLDLSCNQLTGG----IPSEIGDL--QIRGLNLSYNF  646 (790)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~g~----ip~~~~~l--~L~~L~Ls~N~  646 (790)
                                                         ... +.|+.|||++|.+++.    ++..+...  .|+.|||++|.
T Consensus       192 -----------------------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          192 -----------------------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             -----------------------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             -----------------------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence                                               112 3788888888888753    44555543  28888899888


Q ss_pred             cccccC----ccccCCCCCCEEEccCCccccc-------CCccccCCCCCCeEecccCcceecCC
Q 036932          647 LSGSIP----GSFSNLKWIESLDLSHNRLSGQ-------VPPRLTELNFLSNFNVSFNNLSGLIP  700 (790)
Q Consensus       647 l~g~ip----~~l~~l~~L~~LdLs~N~lsg~-------ip~~l~~l~~L~~L~ls~N~l~g~iP  700 (790)
                      +++..+    ..+..+++|+.|+|++|.+++.       ++..+..++.|+.||+++|++.+..|
T Consensus       237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            887655    3457789999999999995543       34567788999999999999987633

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.4e-22  Score=209.90  Aligned_cols=205  Identities=21%  Similarity=0.148  Sum_probs=172.1

Q ss_pred             hccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccE
Q 036932          420 LLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRF  499 (790)
Q Consensus       420 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  499 (790)
                      +.++++++.+++++|.++..++..  .++++.|++++|.+++..+..+..+++|+.|++++|++++..+.  ..+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence            456678888999988888655443  26789999999999887788899999999999999999865433  78889999


Q ss_pred             EeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccccccccccccccc
Q 036932          500 LLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFG  579 (790)
Q Consensus       500 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  579 (790)
                      |++++|+++ .+|..+..+++|+.|++++|++++..|..+                                        
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~----------------------------------------  120 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL----------------------------------------  120 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT----------------------------------------
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH----------------------------------------
Confidence            999999998 678888899999999999999985444333                                        


Q ss_pred             ccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCC
Q 036932          580 HYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNL  658 (790)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l  658 (790)
                                                   ..++.|+.|+|++|++++..+..+..+. |+.|+|++|+|++..+..|.++
T Consensus       121 -----------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  171 (290)
T 1p9a_G          121 -----------------------------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL  171 (290)
T ss_dssp             -----------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred             -----------------------------cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence                                         2256899999999999976666677776 9999999999997777778999


Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecC
Q 036932          659 KWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLI  699 (790)
Q Consensus       659 ~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~i  699 (790)
                      ++|+.|+|++|+|+ .+|..+..+..|+.++|++|++.|.+
T Consensus       172 ~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            99999999999999 78888889999999999999998865

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=8.8e-23  Score=209.90  Aligned_cols=226  Identities=17%  Similarity=0.206  Sum_probs=134.4

Q ss_pred             ccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEE
Q 036932          278 QKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLY  357 (790)
Q Consensus       278 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  357 (790)
                      .++..+++..+.+.+..  ....+++|+.|++++|.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|++|+
T Consensus        19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~   91 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred             HHHHHHHhcCccccccc--ccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence            34444555555544322  2344555555555555554 3332  23455555555555555432  2444555555555


Q ss_pred             cCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCcccc
Q 036932          358 LENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLS  437 (790)
Q Consensus       358 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  437 (790)
                      +++|.+++..+..+..+++|++|++++|+++                         +..+..+..+++|++|++++|.++
T Consensus        92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~n~l~  146 (272)
T 3rfs_A           92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-------------------------SLPDGVFDKLTNLTYLNLAHNQLQ  146 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCccCccChhHhcCCcCCCEEECCCCcCC-------------------------ccCHHHhccCCCCCEEECCCCccC
Confidence            5555555444444445555555555555544                         444444555566666666666666


Q ss_pred             Ccccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCcccc
Q 036932          438 GPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLC  516 (790)
Q Consensus       438 ~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~  516 (790)
                      +..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+       
T Consensus       147 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------  219 (272)
T 3rfs_A          147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------  219 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------
T ss_pred             ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------
Confidence            6655555 66777777777777776555566777777777777777777666667777777777777777653       


Q ss_pred             CCCCCCEEEccCCcCcccCChhHHHH
Q 036932          517 QLRRLGVLDLSHNRISGSIPSCLTIM  542 (790)
Q Consensus       517 ~l~~L~~L~Ls~N~l~g~~p~~~~~~  542 (790)
                      .+++|+.++++.|+++|.+|.+++.+
T Consensus       220 ~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          220 TCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             cCcHHHHHHHHHHhCCCcccCccccc
Confidence            35567777777777777777766543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=6.3e-23  Score=210.98  Aligned_cols=205  Identities=20%  Similarity=0.181  Sum_probs=155.3

Q ss_pred             ccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEE
Q 036932          301 MKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNEL  380 (790)
Q Consensus       301 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  380 (790)
                      +.++..+++..+.+.+....   ..+++|+.|++++|.+...  ..+..+++|++|++++|.+++.  ..+..+++|++|
T Consensus        18 ~~~l~~l~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L   90 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYL   90 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEECH---HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEE
T ss_pred             HHHHHHHHhcCccccccccc---ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEE
Confidence            34455666666666533332   3456666666666666432  2345555666666665555432  234445555555


Q ss_pred             EcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcC
Q 036932          381 DISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSL  459 (790)
Q Consensus       381 ~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l  459 (790)
                      ++++|                         .+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++
T Consensus        91 ~L~~n-------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  145 (272)
T 3rfs_A           91 ILTGN-------------------------QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL  145 (272)
T ss_dssp             ECTTS-------------------------CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCC-------------------------ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc
Confidence            55555                         4444445556677889999999999999888877 899999999999999


Q ss_pred             ccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh
Q 036932          460 SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS  537 (790)
Q Consensus       460 ~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~  537 (790)
                      ++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|..|.
T Consensus       146 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            977777789999999999999999988888889999999999999999998888899999999999999999998884

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=5.9e-24  Score=230.83  Aligned_cols=217  Identities=19%  Similarity=0.217  Sum_probs=140.7

Q ss_pred             hccCCCCCEEecCCcc---ccCcccccc--------cccccceeeccCCcCcc----ccchhhcCCCCCcEEeccCCccc
Q 036932          420 LLNHGSLNLLSVSENC---LSGPMTSSF--------NLSSLEHLYLQMNSLSG----PIPIALFRSSNLITLDLRDNRFS  484 (790)
Q Consensus       420 ~~~~~~L~~L~l~~n~---l~~~~~~~~--------~l~~L~~L~L~~n~l~~----~~p~~~~~~~~L~~L~L~~N~l~  484 (790)
                      +..+++|++|++++|.   +++.+|..+        .+++|++|+|++|.+++    .+|..+..+++|++|+|++|+++
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            3445556666665542   223323211        45667777777777765    35666777777777777777776


Q ss_pred             ccCchhhh----cC---------ccccEEeccCcccc-ccCC---ccccCCCCCCEEEccCCcCcccCChhHHHHHHhhc
Q 036932          485 GVIPHQIS----ES---------LTLRFLLLRGNYLE-GQIP---NQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVA  547 (790)
Q Consensus       485 ~~~p~~~~----~l---------~~L~~L~L~~N~l~-~~~~---~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~  547 (790)
                      +..+..+.    .+         ++|++|++++|+++ +.++   ..+..+++|+.|++++|+++..   .+..+..   
T Consensus       136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~---g~~~l~~---  209 (386)
T 2ca6_A          136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE---GIEHLLL---  209 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH---HHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh---HHHHHHH---
Confidence            44333333    33         67777777777776 3334   3556677888888888877611   0000000   


Q ss_pred             ccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCccc--
Q 036932          548 GNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLT--  625 (790)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--  625 (790)
                                                          ..                      ...++.|+.|+|++|.++  
T Consensus       210 ------------------------------------~~----------------------l~~~~~L~~L~Ls~n~l~~~  231 (386)
T 2ca6_A          210 ------------------------------------EG----------------------LAYCQELKVLDLQDNTFTHL  231 (386)
T ss_dssp             ------------------------------------TT----------------------GGGCTTCCEEECCSSCCHHH
T ss_pred             ------------------------------------HH----------------------hhcCCCccEEECcCCCCCcH
Confidence                                                00                      012467788888888876  


Q ss_pred             --ccCChhhhhce-ecceeccCCccccc----cCccc--cCCCCCCEEEccCCcccc----cCCccc-cCCCCCCeEecc
Q 036932          626 --GGIPSEIGDLQ-IRGLNLSYNFLSGS----IPGSF--SNLKWIESLDLSHNRLSG----QVPPRL-TELNFLSNFNVS  691 (790)
Q Consensus       626 --g~ip~~~~~l~-L~~L~Ls~N~l~g~----ip~~l--~~l~~L~~LdLs~N~lsg----~ip~~l-~~l~~L~~L~ls  691 (790)
                        +.+|..+..+. |+.|+|++|.+++.    +|..+  +.+++|+.|+|++|++++    .+|..+ ..+++|++|+++
T Consensus       232 g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~  311 (386)
T 2ca6_A          232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN  311 (386)
T ss_dssp             HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence              56777777766 88888888888876    56666  348888899999998888    588777 568888899999


Q ss_pred             cCcceecCC
Q 036932          692 FNNLSGLIP  700 (790)
Q Consensus       692 ~N~l~g~iP  700 (790)
                      +|++++..|
T Consensus       312 ~N~l~~~~~  320 (386)
T 2ca6_A          312 GNRFSEEDD  320 (386)
T ss_dssp             TSBSCTTSH
T ss_pred             CCcCCcchh
Confidence            998887654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=8.1e-23  Score=214.62  Aligned_cols=203  Identities=21%  Similarity=0.197  Sum_probs=151.2

Q ss_pred             CCCCEEecCCccccCccccc---ccccccceeeccCCcCccccc----hhhcCCCCCcEEeccCCcccccCchhhhcCcc
Q 036932          424 GSLNLLSVSENCLSGPMTSS---FNLSSLEHLYLQMNSLSGPIP----IALFRSSNLITLDLRDNRFSGVIPHQISESLT  496 (790)
Q Consensus       424 ~~L~~L~l~~n~l~~~~~~~---~~l~~L~~L~L~~n~l~~~~p----~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~  496 (790)
                      ++|++|++++|.+++..+..   ..+++|++|++++|.+++..+    ..+..+++|++|++++|++++..+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            45777777777777666655   256777788888887776444    34456788888888888888777788888888


Q ss_pred             ccEEeccCcccccc--C--CccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccc
Q 036932          497 LRFLLLRGNYLEGQ--I--PNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYY  572 (790)
Q Consensus       497 L~~L~L~~N~l~~~--~--~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  572 (790)
                      |++|++++|++.+.  +  +..+..+++|++|++++|+++ .+|.....+.                             
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~-----------------------------  220 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA-----------------------------  220 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH-----------------------------
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH-----------------------------
Confidence            88888888887642  2  233467888999999999886 3332211100                             


Q ss_pred             cccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhc----eecceeccCCccc
Q 036932          573 NSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL----QIRGLNLSYNFLS  648 (790)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l----~L~~L~Ls~N~l~  648 (790)
                                                          ..++.|+.|||++|++++.+|..++.+    .|+.|+|++|+|+
T Consensus       221 ------------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          221 ------------------------------------AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             ------------------------------------HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             ------------------------------------hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence                                                124678899999999998888888776    3999999999999


Q ss_pred             cccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCccee
Q 036932          649 GSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSG  697 (790)
Q Consensus       649 g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g  697 (790)
                       .+|..+.  ++|+.|||++|+|++. |. +..++.|+.|++++|+++.
T Consensus       265 -~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          265 -QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             -chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence             7787775  7999999999999974 33 6778899999999998863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.9e-22  Score=204.88  Aligned_cols=211  Identities=20%  Similarity=0.227  Sum_probs=149.3

Q ss_pred             ccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEcc
Q 036932          448 SLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLS  527 (790)
Q Consensus       448 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls  527 (790)
                      ..++++++++.++ .+|..+.  ++++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4566677777766 4555443  467777777777777777777777777777777777777777777777888888888


Q ss_pred             CCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceeccc
Q 036932          528 HNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYN  607 (790)
Q Consensus       528 ~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  607 (790)
                      +|++++..|..+                                                                    
T Consensus        92 ~n~l~~~~~~~~--------------------------------------------------------------------  103 (251)
T 3m19_A           92 NNQLASLPLGVF--------------------------------------------------------------------  103 (251)
T ss_dssp             TSCCCCCCTTTT--------------------------------------------------------------------
T ss_pred             CCcccccChhHh--------------------------------------------------------------------
Confidence            887774333222                                                                    


Q ss_pred             CcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 036932          608 GSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLS  686 (790)
Q Consensus       608 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~  686 (790)
                       ..++.|+.|+|++|++++..+..++.+. |+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..+..+++|+
T Consensus       104 -~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          104 -DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             -TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             -cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence             1245778888888888755555566676 99999999999987777899999999999999999998888999999999


Q ss_pred             eEecccCcceecCCCCCcCCCc-C-----cccccCCcCCCCCCCCCCCCCC
Q 036932          687 NFNVSFNNLSGLIPDKGQFATF-D-----ESSYRGNLHLCGPTINKSCNST  731 (790)
Q Consensus       687 ~L~ls~N~l~g~iP~~~~~~~~-~-----~~~~~gn~~lcg~~~~~~c~~~  731 (790)
                      +|++++|+++|..+.-..+..+ .     .....|+ .+|+.+....|..+
T Consensus       183 ~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          183 TITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             EEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             EEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence            9999999999875432111111 0     1112233 36777767778655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=2.1e-21  Score=199.49  Aligned_cols=204  Identities=21%  Similarity=0.208  Sum_probs=144.4

Q ss_pred             cccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcc
Q 036932          304 LIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDIS  383 (790)
Q Consensus       304 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  383 (790)
                      .+.++++++.++ .+|..+   .+++++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            455666666665 555432   1345566666665555444455555555555555555554444444555555555555


Q ss_pred             cccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccc
Q 036932          384 NNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGP  462 (790)
Q Consensus       384 ~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~  462 (790)
                      +|+++                         +..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|.+++.
T Consensus        94 ~n~l~-------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  148 (270)
T 2o6q_A           94 DNKLQ-------------------------ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL  148 (270)
T ss_dssp             SSCCC-------------------------CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCcCC-------------------------cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence            55554                         3344445566677788888888877777766 788888888888888866


Q ss_pred             cchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932          463 IPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP  536 (790)
Q Consensus       463 ~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p  536 (790)
                      .+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            66668888999999999999998777788889999999999999997777778899999999999999987654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=3.2e-23  Score=225.05  Aligned_cols=242  Identities=21%  Similarity=0.224  Sum_probs=167.9

Q ss_pred             cchhhhcccccccccCcccccccccChh---hhhcCCcCcEEEccCCc---Cccccccc-------ccCCCCCcEEEcCC
Q 036932          294 LPSSIGEMKALIFLRLPKNNFSGELPAP---LLTGCISLGLLDLSGNN---FYGQIFPK-------YMNLTQLEFLYLEN  360 (790)
Q Consensus       294 ~p~~l~~l~~L~~L~Ls~n~l~~~i~~~---~~~~l~~L~~L~L~~n~---l~~~~~~~-------~~~l~~L~~L~L~~  360 (790)
                      ++..+..+++|++|++++|.+.+..+..   .+..+++|++|+|++|.   +.+.+|..       +..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            3344444455555555555444322211   12345555555555532   22333332       25667777777777


Q ss_pred             ccccc----ccccccCCCCCCcEEEcccccCcCCCchhhhh----c---------cCCCeEEEccCcccc-ccch---hh
Q 036932          361 NKFSG----KIEEGLSNSNELNELDISNNLLSGHIPHWIGN----F---------SSDLKVLLMSKMFLK-GNIP---AQ  419 (790)
Q Consensus       361 n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~----~---------~~~L~~L~l~~n~l~-~~~~---~~  419 (790)
                      |.++.    .++..+..+++|++|++++|.+++..+..+..    +         +. |+.|++++|.++ +.++   ..
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP-LRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC-CCEEECCSSCCTGGGHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC-CcEEECCCCCCCcHHHHHHHHH
Confidence            77765    35556667777777777777775433333333    2         45 888888888876 3444   46


Q ss_pred             hccCCCCCEEecCCccccC-----cccccc-cccccceeeccCCcCc----cccchhhcCCCCCcEEeccCCccccc---
Q 036932          420 LLNHGSLNLLSVSENCLSG-----PMTSSF-NLSSLEHLYLQMNSLS----GPIPIALFRSSNLITLDLRDNRFSGV---  486 (790)
Q Consensus       420 ~~~~~~L~~L~l~~n~l~~-----~~~~~~-~l~~L~~L~L~~n~l~----~~~p~~~~~~~~L~~L~L~~N~l~~~---  486 (790)
                      +..+++|++|++++|.++.     ..+..+ .+++|++|+|++|.++    +.+|..+..+++|+.|+|++|++++.   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            7788899999999999873     334244 7899999999999996    56888999999999999999999876   


Q ss_pred             -Cchhhhc--CccccEEeccCccccc----cCCccc-cCCCCCCEEEccCCcCcccCC
Q 036932          487 -IPHQISE--SLTLRFLLLRGNYLEG----QIPNQL-CQLRRLGVLDLSHNRISGSIP  536 (790)
Q Consensus       487 -~p~~~~~--l~~L~~L~L~~N~l~~----~~~~~l-~~l~~L~~L~Ls~N~l~g~~p  536 (790)
                       ++.++..  +++|+.|+|++|.+++    .+|..+ .++++|+.|++++|++++..|
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             5666644  8999999999999998    477777 668999999999999997765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.2e-22  Score=216.30  Aligned_cols=227  Identities=18%  Similarity=0.233  Sum_probs=148.3

Q ss_pred             CeEEEccCccccccchhhhccCCCCCEEecCCccccCc-ccccc-cccccceeeccCCcCccccchhhcCCCCCcEEecc
Q 036932          402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGP-MTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLR  479 (790)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~  479 (790)
                      ++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+ .+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        72 l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~  150 (336)
T 2ast_B           72 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  150 (336)
T ss_dssp             CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence            44455555444443333 33455666666666666544 44444 56677777777777776667777777777777777


Q ss_pred             CC-ccccc-CchhhhcCccccEEeccCc-ccccc-CCccccCCC-CCCEEEccCC--cCc-ccCChhHHHHHHhhccccc
Q 036932          480 DN-RFSGV-IPHQISESLTLRFLLLRGN-YLEGQ-IPNQLCQLR-RLGVLDLSHN--RIS-GSIPSCLTIMLLWVAGNVY  551 (790)
Q Consensus       480 ~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~l~~l~-~L~~L~Ls~N--~l~-g~~p~~~~~~~~~~~~~~~  551 (790)
                      +| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++|  .++ +.+|..+.           
T Consensus       151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-----------  219 (336)
T 2ast_B          151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-----------  219 (336)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-----------
T ss_pred             CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-----------
Confidence            77 56642 5555677777777777777 77654 466667777 8888888887  343 22232221           


Q ss_pred             CCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCc-ccccCCh
Q 036932          552 LHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQ-LTGGIPS  630 (790)
Q Consensus       552 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~g~ip~  630 (790)
                                                                                .++.|+.|++++|. +++..+.
T Consensus       220 ----------------------------------------------------------~~~~L~~L~l~~~~~l~~~~~~  241 (336)
T 2ast_B          220 ----------------------------------------------------------RCPNLVHLDLSDSVMLKNDCFQ  241 (336)
T ss_dssp             ----------------------------------------------------------HCTTCSEEECTTCTTCCGGGGG
T ss_pred             ----------------------------------------------------------hCCCCCEEeCCCCCcCCHHHHH
Confidence                                                                      24678888888888 6767777


Q ss_pred             hhhhce-ecceeccCCc-cccccCccccCCCCCCEEEccCCcccccCCccccCC-CCCCeEecccCcceecCCCC
Q 036932          631 EIGDLQ-IRGLNLSYNF-LSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEL-NFLSNFNVSFNNLSGLIPDK  702 (790)
Q Consensus       631 ~~~~l~-L~~L~Ls~N~-l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l-~~L~~L~ls~N~l~g~iP~~  702 (790)
                      .++.+. |+.|++++|. ++......++++++|+.|++++| ++.   ..+..+ ..+..|++++|+++|..|..
T Consensus       242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence            777776 8888888885 33333336788899999999988 332   233444 24777788999999888753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=3.6e-22  Score=209.63  Aligned_cols=221  Identities=22%  Similarity=0.214  Sum_probs=174.5

Q ss_pred             CCCEEecCCccccCccc----ccccccccceeeccCCcCccccchhh--cCCCCCcEEeccCCcccccCc----hhhhcC
Q 036932          425 SLNLLSVSENCLSGPMT----SSFNLSSLEHLYLQMNSLSGPIPIAL--FRSSNLITLDLRDNRFSGVIP----HQISES  494 (790)
Q Consensus       425 ~L~~L~l~~n~l~~~~~----~~~~l~~L~~L~L~~n~l~~~~p~~~--~~~~~L~~L~L~~N~l~~~~p----~~~~~l  494 (790)
                      .++.+.+.++.++....    ....+++|++|++++|.+++..|..+  ..+++|++|++++|++++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            46677777766653211    11256779999999999999999888  889999999999999997655    345678


Q ss_pred             ccccEEeccCccccccCCccccCCCCCCEEEccCCcCccc--CChhHHHHHHhhcccccCCCcccccccccccccccccc
Q 036932          495 LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS--IPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYY  572 (790)
Q Consensus       495 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  572 (790)
                      ++|++|++++|++.+..+..+..+++|++|||++|++.+.  ++....                                
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--------------------------------  192 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC--------------------------------  192 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC--------------------------------
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh--------------------------------
Confidence            9999999999999999999999999999999999998742  110000                                


Q ss_pred             cccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChh----hhhce-ecceeccCCcc
Q 036932          573 NSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSE----IGDLQ-IRGLNLSYNFL  647 (790)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~----~~~l~-L~~L~Ls~N~l  647 (790)
                                                         ...++.|++|+|++|+++ .+|..    ++.+. |+.|||++|++
T Consensus       193 -----------------------------------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l  236 (310)
T 4glp_A          193 -----------------------------------PHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSL  236 (310)
T ss_dssp             -----------------------------------TTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCC
T ss_pred             -----------------------------------hhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCC
Confidence                                               023578999999999997 34432    35555 99999999999


Q ss_pred             ccccCccccCC---CCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCc
Q 036932          648 SGSIPGSFSNL---KWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNL  717 (790)
Q Consensus       648 ~g~ip~~l~~l---~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~  717 (790)
                      ++.+|..++.+   ++|+.|||++|+|+ .+|..+.  ++|+.|||++|++++. |.-..+..+....+.||+
T Consensus       237 ~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          237 RATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred             CccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence            99999888887   69999999999999 7788775  7999999999999973 333445555555666664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=3.9e-21  Score=199.12  Aligned_cols=204  Identities=25%  Similarity=0.279  Sum_probs=148.1

Q ss_pred             hhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCC
Q 036932          298 IGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNEL  377 (790)
Q Consensus       298 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  377 (790)
                      +.+++++++++++++.++ .+|..+.   ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+.  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            344556666666666666 5665432   4566666666666665555666666666666666666543221  455556


Q ss_pred             cEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccC
Q 036932          378 NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQM  456 (790)
Q Consensus       378 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~  456 (790)
                      ++|++++|+++                          .+|..+..+++|++|++++|.+++..+..+ .+++|++|++++
T Consensus        80 ~~L~Ls~N~l~--------------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~  133 (290)
T 1p9a_G           80 GTLDLSHNQLQ--------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG  133 (290)
T ss_dssp             CEEECCSSCCS--------------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCC--------------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence            66666555554                          344455566678888888888887777767 788888888888


Q ss_pred             CcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCccc
Q 036932          457 NSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS  534 (790)
Q Consensus       457 n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~  534 (790)
                      |++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|+.++|++|++.+.
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            8888766677788899999999999999776667788999999999999998 7788888889999999999998754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=6.6e-22  Score=210.49  Aligned_cols=197  Identities=19%  Similarity=0.209  Sum_probs=126.4

Q ss_pred             CcEEEccCCcCcccccccccCC--CCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCC-CchhhhhccCCCeEE
Q 036932          329 LGLLDLSGNNFYGQIFPKYMNL--TQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGH-IPHWIGNFSSDLKVL  405 (790)
Q Consensus       329 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~~~~~L~~L  405 (790)
                      ++.++++++.+.   +..+..+  ++++.+++++|.+.+..+. +..+++|++|++++|.+++. +|..+..++. |+.|
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~-L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK-LQNL  123 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC-CSEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC-CCEE
Confidence            445555554443   2223333  4555555555555544433 33456666666666665543 5555555555 6666


Q ss_pred             EccCccccccchhhhccCCCCCEEecCCc-cccCc-ccccc-cccccceeeccCC-cCccc-cchhhcCCC-CCcEEecc
Q 036932          406 LMSKMFLKGNIPAQLLNHGSLNLLSVSEN-CLSGP-MTSSF-NLSSLEHLYLQMN-SLSGP-IPIALFRSS-NLITLDLR  479 (790)
Q Consensus       406 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~-~l~~L~~L~L~~n-~l~~~-~p~~~~~~~-~L~~L~L~  479 (790)
                      ++++|.+++..+..+..+++|++|++++| .+++. .+..+ .+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            66666666666666667777777777777 45542 33334 6777778888777 77654 566677777 88888888


Q ss_pred             CC--ccc-ccCchhhhcCccccEEeccCcc-ccccCCccccCCCCCCEEEccCCc
Q 036932          480 DN--RFS-GVIPHQISESLTLRFLLLRGNY-LEGQIPNQLCQLRRLGVLDLSHNR  530 (790)
Q Consensus       480 ~N--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~Ls~N~  530 (790)
                      +|  .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|+.|++++|.
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            88  444 4556667778888888888887 666677777888888888888885

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.1e-21  Score=195.56  Aligned_cols=195  Identities=18%  Similarity=0.262  Sum_probs=132.5

Q ss_pred             CCCEEecCCccccCcccccc-cccccceeeccCCc-CccccchhhcCCCCCcEEeccC-CcccccCchhhhcCccccEEe
Q 036932          425 SLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNS-LSGPIPIALFRSSNLITLDLRD-NRFSGVIPHQISESLTLRFLL  501 (790)
Q Consensus       425 ~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~-l~~~~p~~~~~~~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~  501 (790)
                      ++++|++++|.+++..+..+ .+++|++|++++|+ +++..+..|..+++|++|++++ |++++..+.++..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666666665555 66777777777775 6644455677777777777777 777766666677777777777


Q ss_pred             ccCccccccCCccccCCCCCC---EEEccCC-cCcccCChhHHHHHHhhcccccCCCccccccccccccccccccccccc
Q 036932          502 LRGNYLEGQIPNQLCQLRRLG---VLDLSHN-RISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFH  577 (790)
Q Consensus       502 L~~N~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  577 (790)
                      +++|++++ +|. +..+++|+   .|++++| ++++..+..+                                      
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--------------------------------------  151 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--------------------------------------  151 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--------------------------------------
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--------------------------------------
Confidence            77777775 454 66777777   7778777 6663222222                                      


Q ss_pred             ccccCCCcccccCcceEEEEeeccceecccCcccccce-EEECCCCcccccCChhhhhce-ecceeccCCc-cccccCcc
Q 036932          578 FGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMV-GLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNF-LSGSIPGS  654 (790)
Q Consensus       578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~-l~g~ip~~  654 (790)
                                                     ..++.|+ .|++++|+++ .+|....... |+.|+|++|+ +++..+..
T Consensus       152 -------------------------------~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~  199 (239)
T 2xwt_C          152 -------------------------------QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA  199 (239)
T ss_dssp             -------------------------------TTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTT
T ss_pred             -------------------------------cchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHH
Confidence                                           1245677 7888888777 5555433333 8888888884 88666777


Q ss_pred             ccCC-CCCCEEEccCCcccccCCccccCCCCCCeEecccCc
Q 036932          655 FSNL-KWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNN  694 (790)
Q Consensus       655 l~~l-~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~  694 (790)
                      |+++ ++|+.||+++|+|++. |..  .++.|+.|+++++.
T Consensus       200 ~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          200 FGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             hhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence            8888 8888888888888854 433  56677888887663

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=9.1e-21  Score=190.95  Aligned_cols=195  Identities=18%  Similarity=0.199  Sum_probs=114.6

Q ss_pred             cCcEEEccCCcCcccccccccCCCCCcEEEcCCcc-cccccccccCCCCCCcEEEccc-ccCcCCCchhhhhccCCCeEE
Q 036932          328 SLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNK-FSGKIEEGLSNSNELNELDISN-NLLSGHIPHWIGNFSSDLKVL  405 (790)
Q Consensus       328 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~~~L~~L  405 (790)
                      +|++|++++|.+++..+..|.++++|++|++++|+ ++...+..|..+++|++|++++ |++++..+..+..++. |+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~-L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL-LKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT-CCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC-CCEE
Confidence            44444444444444444444444555555555543 4433333444445555555554 4444333344444444 5555


Q ss_pred             EccCccccccchhhhccCCCCC---EEecCCc-cccCcccccc-cccccc-eeeccCCcCccccchhhcCCCCCcEEecc
Q 036932          406 LMSKMFLKGNIPAQLLNHGSLN---LLSVSEN-CLSGPMTSSF-NLSSLE-HLYLQMNSLSGPIPIALFRSSNLITLDLR  479 (790)
Q Consensus       406 ~l~~n~l~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~-~l~~L~-~L~L~~n~l~~~~p~~~~~~~~L~~L~L~  479 (790)
                      ++++|.+++ +|. +..+++|+   +|++++| .+++..+..+ .+++|+ +|++++|+++ .+|......++|+.|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence            555554443 333 44555555   7777777 6666666555 677777 7777777777 455544444778888888


Q ss_pred             CCc-ccccCchhhhcC-ccccEEeccCccccccCCccccCCCCCCEEEccCC
Q 036932          480 DNR-FSGVIPHQISES-LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN  529 (790)
Q Consensus       480 ~N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N  529 (790)
                      +|+ +++..+..+..+ ++|+.|++++|++++. |..  .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence            884 776666777777 7888888888888743 332  5677788887765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=7.3e-20  Score=185.67  Aligned_cols=160  Identities=21%  Similarity=0.197  Sum_probs=121.1

Q ss_pred             CCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeec
Q 036932          376 ELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYL  454 (790)
Q Consensus       376 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L  454 (790)
                      .++.|++++|.+++..+..+..++. |++|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTK-LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEccCCCcCccCHhHhcCccc-CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            4444444444444444444444444 5555555555555555556666778888888888887777766 7888889999


Q ss_pred             cCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCccc
Q 036932          455 QMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS  534 (790)
Q Consensus       455 ~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~  534 (790)
                      ++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99988866666778899999999999999987777899999999999999999988888899999999999999999876


Q ss_pred             CC
Q 036932          535 IP  536 (790)
Q Consensus       535 ~p  536 (790)
                      .+
T Consensus       195 ~~  196 (251)
T 3m19_A          195 RC  196 (251)
T ss_dssp             ST
T ss_pred             cc
Confidence            44

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=8.6e-20  Score=190.98  Aligned_cols=199  Identities=25%  Similarity=0.363  Sum_probs=143.3

Q ss_pred             hhcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCc
Q 036932           31 GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLK  110 (790)
Q Consensus        31 ~~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  110 (790)
                      .++.+++|++|++++|.+..++++..+++|++|++++|.+.+..+   +..+++|++|++++|.+.+.  +.+.++++|+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            345678899999999988877788889999999999998886543   78888999999999988753  3688889999


Q ss_pred             EEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCC
Q 036932          111 VLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPN  190 (790)
Q Consensus       111 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~  190 (790)
                      +|++++|++++. + .+..+++|++|++++|.+++. +.  +.++++|++|++++|.                       
T Consensus       111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~n~-----------------------  162 (308)
T 1h6u_A          111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP--LAGLTNLQYLSIGNAQ-----------------------  162 (308)
T ss_dssp             EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCCEEECCSSC-----------------------
T ss_pred             EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc--ccCCCCccEEEccCCc-----------------------
Confidence            999999988864 3 388888999999998888743 22  6666666666666554                       


Q ss_pred             CCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCC
Q 036932          191 YNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLP  270 (790)
Q Consensus       191 n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p  270 (790)
                        +..++. +..+++|+.|++++|.++ .++.  +..+++|++|++++|.+++..  ++..+++|+.|++++|.++ ..|
T Consensus       163 --l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~-~~~  233 (308)
T 1h6u_A          163 --VSDLTP-LANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT-NQP  233 (308)
T ss_dssp             --CCCCGG-GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE-CCC
T ss_pred             --CCCChh-hcCCCCCCEEECCCCccC-cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee-cCC
Confidence              444443 555666666666666665 3333  345666777777776666553  3556677777777777766 344


Q ss_pred             h
Q 036932          271 E  271 (790)
Q Consensus       271 ~  271 (790)
                      .
T Consensus       234 ~  234 (308)
T 1h6u_A          234 V  234 (308)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=4.5e-20  Score=193.09  Aligned_cols=211  Identities=18%  Similarity=0.227  Sum_probs=126.9

Q ss_pred             cccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEc
Q 036932          279 KLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYL  358 (790)
Q Consensus       279 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  358 (790)
                      ++..+.+..+.+++..+  ...+++|++|++++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|++|++
T Consensus        20 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L   92 (308)
T 1h6u_A           20 NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL   92 (308)
T ss_dssp             HHHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred             HHHHHHhCCCCcCceec--HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEc
Confidence            33444555555543322  335566666666666665 4442  3456666666666666654333  555566666666


Q ss_pred             CCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccC
Q 036932          359 ENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSG  438 (790)
Q Consensus       359 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  438 (790)
                      ++|.+++. + .+..+++|++|++++|+++                         +. + .+..+++|++|++++|.+++
T Consensus        93 ~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~-------------------------~~-~-~l~~l~~L~~L~l~~n~l~~  143 (308)
T 1h6u_A           93 SGNPLKNV-S-AIAGLQSIKTLDLTSTQIT-------------------------DV-T-PLAGLSNLQVLYLDLNQITN  143 (308)
T ss_dssp             CSCCCSCC-G-GGTTCTTCCEEECTTSCCC-------------------------CC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred             cCCcCCCc-h-hhcCCCCCCEEECCCCCCC-------------------------Cc-h-hhcCCCCCCEEECCCCccCc
Confidence            66655532 2 3555555555555555554                         21 1 14555666666666666665


Q ss_pred             cccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCC
Q 036932          439 PMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQL  518 (790)
Q Consensus       439 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l  518 (790)
                      ..+ ...+++|++|++++|++++. +. +..+++|+.|++++|++++..+  +..+++|++|++++|++++..+  +..+
T Consensus       144 ~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l  216 (308)
T 1h6u_A          144 ISP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT  216 (308)
T ss_dssp             CGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTC
T ss_pred             Ccc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCC
Confidence            444 22666777777777777643 32 6677777777777777775433  6777777777777777775543  6777


Q ss_pred             CCCCEEEccCCcCc
Q 036932          519 RRLGVLDLSHNRIS  532 (790)
Q Consensus       519 ~~L~~L~Ls~N~l~  532 (790)
                      ++|+.|++++|+++
T Consensus       217 ~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          217 SNLFIVTLTNQTIT  230 (308)
T ss_dssp             TTCCEEEEEEEEEE
T ss_pred             CCCCEEEccCCeee
Confidence            77888888888776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=5.4e-20  Score=206.45  Aligned_cols=186  Identities=25%  Similarity=0.338  Sum_probs=104.4

Q ss_pred             CeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCC
Q 036932          402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN  481 (790)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N  481 (790)
                      ++.|++++|.+++ +|..+.  ++|++|++++|.++. +|  -.+++|++|++++|++++ +|. +..  +|+.|++++|
T Consensus        61 L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           61 FSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             CSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred             ccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence            6666666666654 454442  556666666666663 23  224566666666666664 454 433  6666666666


Q ss_pred             cccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccc
Q 036932          482 RFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFS  561 (790)
Q Consensus       482 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  561 (790)
                      ++++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|+|++|++++ +|. +                      
T Consensus       131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l----------------------  178 (571)
T 3cvr_A          131 QLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L----------------------  178 (571)
T ss_dssp             CCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C----------------------
T ss_pred             cCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h----------------------
Confidence            6665 333   45566666666666664 343   35566666666666653 442 1                      


Q ss_pred             ccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhcee----
Q 036932          562 AIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQI----  637 (790)
Q Consensus       562 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~L----  637 (790)
                                                                       .+.|+.|+|++|+|+ .+|. +.. .|    
T Consensus       179 -------------------------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~-~L~~~~  206 (571)
T 3cvr_A          179 -------------------------------------------------PESLEALDVSTNLLE-SLPA-VPV-RNHHSE  206 (571)
T ss_dssp             -------------------------------------------------CTTCCEEECCSSCCS-SCCC-CC--------
T ss_pred             -------------------------------------------------hCCCCEEECcCCCCC-chhh-HHH-hhhccc
Confidence                                                             024566666666666 5554 332 34    


Q ss_pred             ---cceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCC
Q 036932          638 ---RGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEL  682 (790)
Q Consensus       638 ---~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l  682 (790)
                         +.|+|++|+|+ .+|..+..+++|+.|||++|.|++.+|..+..+
T Consensus       207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             -CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             ccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence               66666666666 455555556666666666666666666655554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=7.5e-20  Score=195.34  Aligned_cols=241  Identities=18%  Similarity=0.201  Sum_probs=153.5

Q ss_pred             CEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcE-EEc
Q 036932          256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGL-LDL  334 (790)
Q Consensus       256 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~-L~L  334 (790)
                      ++++.++++++ .+|..+   .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+|...|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            46777777777 777655   3567777777777775444566777777777777777665666666666666554 444


Q ss_pred             cCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccc
Q 036932          335 SGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG  414 (790)
Q Consensus       335 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~  414 (790)
                      ..|++....+..|..+++|++|++++|+++...+..+....++..+++.++                        +.+..
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~------------------------~~i~~  143 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN------------------------INIHT  143 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC------------------------TTCCE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc------------------------ccccc
Confidence            556666555556666666666666666665444444444444555555432                        22222


Q ss_pred             cchhhhccC-CCCCEEecCCccccCcccccccccccceeeccC-CcCccccc-hhhcCCCCCcEEeccCCcccccCchhh
Q 036932          415 NIPAQLLNH-GSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQM-NSLSGPIP-IALFRSSNLITLDLRDNRFSGVIPHQI  491 (790)
Q Consensus       415 ~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~-n~l~~~~p-~~~~~~~~L~~L~L~~N~l~~~~p~~~  491 (790)
                      ..+..+..+ ..++.|++++|.++...+..+...+|+.+++.+ |.++ .+| ..|..+++|++||+++|+|+...+..+
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~  222 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGL  222 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred             ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence            222233333 247778888888877666666667888888875 5555 454 567888899999999999986544444


Q ss_pred             hcCccccEEeccCccccccCCccccCCCCCCEEEccCC
Q 036932          492 SESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN  529 (790)
Q Consensus       492 ~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N  529 (790)
                      .   +|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus       223 ~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          223 E---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             T---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             c---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4   45555544443333666 3778899999998754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.6e-19  Score=192.84  Aligned_cols=240  Identities=18%  Similarity=0.192  Sum_probs=133.2

Q ss_pred             ceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCccc--cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCE-EecCC
Q 036932           16 WLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSE-FILRG   92 (790)
Q Consensus        16 ~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~-L~L~~   92 (790)
                      .+...+++++.++.. +  .+++++|+|++|+|+.++  +|.++++|++|+|++|.+.+.++..+|.+++++++ +.+++
T Consensus        13 ~v~C~~~~Lt~iP~~-l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVTEIPSD-L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCCSCCTT-C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCCccCcC-c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            344555556655532 2  245666666666666332  35666666666666666554444445555555543 33444


Q ss_pred             CcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCccc
Q 036932           93 INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSV  172 (790)
Q Consensus        93 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~  172 (790)
                      |++....|.+|.++++|++|++++|++.+..+..+....++..|++                         .++.....+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l-------------------------~~~~~i~~l  144 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI-------------------------QDNINIHTI  144 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE-------------------------ESCTTCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh-------------------------ccccccccc
Confidence            5555555555555555555555555555444444444444444444                         333333333


Q ss_pred             ccCCCCCCc-cceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCC
Q 036932          173 KTENFLPTF-QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTK  251 (790)
Q Consensus       173 ~~~~~~~~~-~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  251 (790)
                      +...|.... .++.|++++|+++.+|...+...+|+.+++++++..+.+|...|.++++|++|++++|.++..   +...
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l---p~~~  221 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL---PSYG  221 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC---CSSS
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc---Chhh
Confidence            333344332 466677777777777776666677777777754333377776666777777777777777653   3334


Q ss_pred             CCCCCEEEeecCCCCccCChhHHhhcccccEecccCC
Q 036932          252 HDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDN  288 (790)
Q Consensus       252 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n  288 (790)
                      +..|+.|.+.++.--..+|. + ..+++|+.++++++
T Consensus       222 ~~~L~~L~~l~~~~l~~lP~-l-~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLPT-L-EKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCCC-T-TTCCSCCEEECSCH
T ss_pred             hccchHhhhccCCCcCcCCC-c-hhCcChhhCcCCCC
Confidence            45555555544432225553 1 24666666666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=1.8e-19  Score=202.25  Aligned_cols=189  Identities=24%  Similarity=0.279  Sum_probs=132.3

Q ss_pred             cCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEc
Q 036932          328 SLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLM  407 (790)
Q Consensus       328 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l  407 (790)
                      +|+.|++++|.+++ +|..+  .++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +..   +|+.|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~---~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA---SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT---TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc---CCCEEEC
Confidence            56666666666655 34333  256666666666666 344   335667777777777765 555 443   3777777


Q ss_pred             cCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccC
Q 036932          408 SKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVI  487 (790)
Q Consensus       408 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~  487 (790)
                      ++|.+++ +|.   .+++|+.|++++|.+++. |.  .+++|++|++++|++++ +|. +.  ++|+.|+|++|+|+ .+
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTML-PE--LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCcC-CC--cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            7777765 454   567788888888888773 33  46788888888888885 666 54  78888888888888 55


Q ss_pred             chhhhcCccc-------cEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHH
Q 036932          488 PHQISESLTL-------RFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLL  544 (790)
Q Consensus       488 p~~~~~l~~L-------~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~  544 (790)
                      |. +..  +|       +.|++++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+..
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            55 443  66       88999999888 57777777899999999999998888888877653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=7e-20  Score=181.45  Aligned_cols=91  Identities=21%  Similarity=0.172  Sum_probs=76.7

Q ss_pred             cccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 036932          611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFN  689 (790)
Q Consensus       611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~  689 (790)
                      ++.|+.|+|++|++++..|..++.+. |+.|+|++|+|++..|..|+++++|+.|||++|+|++.+|..|..+++|++|+
T Consensus        80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence            34566666666666655555666666 88888999999988899999999999999999999999999999999999999


Q ss_pred             cccCcceecCCC
Q 036932          690 VSFNNLSGLIPD  701 (790)
Q Consensus       690 ls~N~l~g~iP~  701 (790)
                      +++|+++|.++-
T Consensus       160 L~~N~l~c~c~l  171 (220)
T 2v70_A          160 LLANPFNCNCYL  171 (220)
T ss_dssp             CCSCCEECSGGG
T ss_pred             ecCcCCcCCCch
Confidence            999999998874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=3.6e-19  Score=175.06  Aligned_cols=108  Identities=24%  Similarity=0.272  Sum_probs=58.8

Q ss_pred             CCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEecc
Q 036932          425 SLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLR  503 (790)
Q Consensus       425 ~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  503 (790)
                      ++++|++++|.+++..+..+ .+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            44455555555544444433 45555555555555554333444555555556665555554444445555566666666


Q ss_pred             CccccccCCccccCCCCCCEEEccCCcCc
Q 036932          504 GNYLEGQIPNQLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       504 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  532 (790)
                      +|++++..+..+..+++|+.|++++|+++
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            66665555555555666666666666655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=3.3e-19  Score=176.57  Aligned_cols=89  Identities=19%  Similarity=0.144  Sum_probs=68.4

Q ss_pred             ccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932          612 KYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV  690 (790)
Q Consensus       612 ~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l  690 (790)
                      +.|+.|+|++|++++..+..+..+. |+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..|..+++|++|++
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence            3444555555555422223344454 778888888888888888999999999999999999988888999999999999


Q ss_pred             ccCcceecCC
Q 036932          691 SFNNLSGLIP  700 (790)
Q Consensus       691 s~N~l~g~iP  700 (790)
                      ++|++.+.++
T Consensus       160 ~~N~~~c~c~  169 (220)
T 2v9t_B          160 AQNPFICDCH  169 (220)
T ss_dssp             CSSCEECSGG
T ss_pred             CCCCcCCCCc
Confidence            9999998664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=1.6e-18  Score=170.47  Aligned_cols=133  Identities=21%  Similarity=0.252  Sum_probs=58.8

Q ss_pred             CCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEE
Q 036932          254 FLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLD  333 (790)
Q Consensus       254 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~  333 (790)
                      +|++|++++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .++...+..+++|++|+
T Consensus        29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence            3444444444443 233332233444444444444444333333344444444444444444 33333334444444444


Q ss_pred             ccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCc
Q 036932          334 LSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS  388 (790)
Q Consensus       334 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  388 (790)
                      +++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            4444444443333444445555555555544433334444455555555555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=8.5e-19  Score=187.92  Aligned_cols=177  Identities=24%  Similarity=0.172  Sum_probs=103.7

Q ss_pred             eeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhh-cCccccEEeccCccccccCCccccCCCCCCEEEccCC
Q 036932          451 HLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQIS-ESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN  529 (790)
Q Consensus       451 ~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N  529 (790)
                      .++++++.++ .+|..+.  +.++.|+|++|++++..+.++. .+++|+.|+|++|++++..+..|..+++|+.|+|++|
T Consensus        22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            4455555554 3444332  2355555555555555555554 5555666666666555555555555666666666666


Q ss_pred             cCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCc
Q 036932          530 RISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGS  609 (790)
Q Consensus       530 ~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  609 (790)
                      ++++..+..+                                                                     .
T Consensus        99 ~l~~~~~~~~---------------------------------------------------------------------~  109 (361)
T 2xot_A           99 HLHTLDEFLF---------------------------------------------------------------------S  109 (361)
T ss_dssp             CCCEECTTTT---------------------------------------------------------------------T
T ss_pred             cCCcCCHHHh---------------------------------------------------------------------C
Confidence            6553222111                                                                     1


Q ss_pred             ccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccc---cCCCCCCEEEccCCcccccCCccccCCCC-
Q 036932          610 NIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSF---SNLKWIESLDLSHNRLSGQVPPRLTELNF-  684 (790)
Q Consensus       610 ~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l---~~l~~L~~LdLs~N~lsg~ip~~l~~l~~-  684 (790)
                      .++.|+.|+|++|++++..|..+..+. |+.|+|++|+|++..+..|   +.+++|+.|||++|+|++..+..+..++. 
T Consensus       110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~  189 (361)
T 2xot_A          110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW  189 (361)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH
T ss_pred             CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh
Confidence            134566666666666655555666665 6677777777765444444   56788888888888888766677777776 


Q ss_pred             -CCeEecccCcceecC
Q 036932          685 -LSNFNVSFNNLSGLI  699 (790)
Q Consensus       685 -L~~L~ls~N~l~g~i  699 (790)
                       ++.|+|++|++.|.+
T Consensus       190 ~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          190 VKNGLYLHNNPLECDC  205 (361)
T ss_dssp             HHTTEECCSSCEECCH
T ss_pred             hcceEEecCCCccCCc
Confidence             377888888887754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=6.8e-18  Score=174.87  Aligned_cols=170  Identities=24%  Similarity=0.354  Sum_probs=126.5

Q ss_pred             cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEE
Q 036932          445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVL  524 (790)
Q Consensus       445 ~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L  524 (790)
                      .+++|+.|++++|.+++ ++ .+..+++|+.|++++|++++..+  +..+++|++|++++|++++. + .+..+++|+.|
T Consensus        44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEE
Confidence            46677777777777763 33 36677778888888887775443  77777888888888877752 2 37778888888


Q ss_pred             EccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeecccee
Q 036932          525 DLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYE  604 (790)
Q Consensus       525 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  604 (790)
                      ++++|++++ ++ .+                                                                 
T Consensus       118 ~L~~n~i~~-~~-~l-----------------------------------------------------------------  130 (291)
T 1h6t_A          118 SLEHNGISD-IN-GL-----------------------------------------------------------------  130 (291)
T ss_dssp             ECTTSCCCC-CG-GG-----------------------------------------------------------------
T ss_pred             ECCCCcCCC-Ch-hh-----------------------------------------------------------------
Confidence            888888773 22 11                                                                 


Q ss_pred             cccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCC
Q 036932          605 LYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELN  683 (790)
Q Consensus       605 ~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~  683 (790)
                          ..++.|+.|++++|++++.  ..++.+. |+.|+|++|++++..|  ++.+++|+.|||++|+|++. | .+..++
T Consensus       131 ----~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~  200 (291)
T 1h6t_A          131 ----VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLK  200 (291)
T ss_dssp             ----GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCT
T ss_pred             ----cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCC
Confidence                1256788888888888753  4666666 8888888888887665  88899999999999999864 4 488889


Q ss_pred             CCCeEecccCccee
Q 036932          684 FLSNFNVSFNNLSG  697 (790)
Q Consensus       684 ~L~~L~ls~N~l~g  697 (790)
                      +|+.|++++|+++.
T Consensus       201 ~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          201 NLDVLELFSQECLN  214 (291)
T ss_dssp             TCSEEEEEEEEEEC
T ss_pred             CCCEEECcCCcccC
Confidence            99999999998875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=6.3e-18  Score=168.51  Aligned_cols=89  Identities=24%  Similarity=0.232  Sum_probs=66.9

Q ss_pred             ccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932          612 KYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV  690 (790)
Q Consensus       612 ~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l  690 (790)
                      +.|+.|+|++|++++..+..+..+. |+.|+|++|+|+ .+|..++.+++|+.|||++|+|++..+..|..+++|+.|++
T Consensus        88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence            3455555555555543344445554 777777777777 67888888999999999999999888788899999999999


Q ss_pred             ccCcceecCCC
Q 036932          691 SFNNLSGLIPD  701 (790)
Q Consensus       691 s~N~l~g~iP~  701 (790)
                      ++|++.|.++.
T Consensus       167 ~~N~~~c~c~~  177 (229)
T 3e6j_A          167 FGNPWDCECRD  177 (229)
T ss_dssp             TTSCBCTTBGG
T ss_pred             eCCCccCCcch
Confidence            99999988763

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.74  E-value=8.4e-19  Score=204.41  Aligned_cols=123  Identities=24%  Similarity=0.346  Sum_probs=72.6

Q ss_pred             cchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcC
Q 036932          415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISES  494 (790)
Q Consensus       415 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l  494 (790)
                      ..+..+..++.|+.|+|++|.+....+..+.+++|++|+|++|.++ .+|..+..+++|++|+|++|+|+ .+|..+..+
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3455566666666666666666644334446666666666666666 56666666666666666666666 456666666


Q ss_pred             ccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHH
Q 036932          495 LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLT  540 (790)
Q Consensus       495 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~  540 (790)
                      ++|++|+|++|.++ .+|..|..+++|+.|+|++|+++|.+|..+.
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            66666666666665 4555566666666666666666665555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=7.8e-18  Score=174.45  Aligned_cols=174  Identities=26%  Similarity=0.328  Sum_probs=119.2

Q ss_pred             hhcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCc
Q 036932           31 GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLK  110 (790)
Q Consensus        31 ~~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  110 (790)
                      .++.+++|++|++++|.+..++.+..+++|++|++++|.+++..+   +..+++|++|++++|.+.+.  +.+.++++|+
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  115 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDL--SSLKDLKKLK  115 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred             chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence            345677778888888877766677777888888888887775542   67777777777777777652  2377777777


Q ss_pred             EEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCC
Q 036932          111 VLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPN  190 (790)
Q Consensus       111 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~  190 (790)
                      +|++++|++++.  ..+..+++|++|++++|.+++.   ..+..+++|++|+++                         +
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~-------------------------~  165 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLE-------------------------D  165 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECC-------------------------S
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEcc-------------------------C
Confidence            777777777754  3567777777777777777643   245555555555555                         4


Q ss_pred             CCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccc
Q 036932          191 YNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTG  243 (790)
Q Consensus       191 n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~  243 (790)
                      |.++.++. +..+++|+.|++++|.++ .++.  +..+++|+.|++++|.++.
T Consensus       166 N~l~~~~~-l~~l~~L~~L~L~~N~i~-~l~~--l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          166 NQISDIVP-LAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCC-BCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred             Cccccchh-hcCCCccCEEECCCCcCC-CChh--hccCCCCCEEECcCCcccC
Confidence            45544544 666677777777777776 4543  4567777777777777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=1.9e-17  Score=163.87  Aligned_cols=154  Identities=22%  Similarity=0.202  Sum_probs=123.3

Q ss_pred             EEEcccccCcCCCchhhhhccCCCeEEEccCccccccch-hhhccCCCCCEEecCCccccCcccccc-cccccceeeccC
Q 036932          379 ELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIP-AQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQM  456 (790)
Q Consensus       379 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~  456 (790)
                      .+++++|.++ .+|..+.   ..++.|++++|.+++..+ ..+..+++|++|++++|.+++..+..+ .+++|++|+|++
T Consensus        15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4555555554 3443322   124556666666555433 346677888888888888888777777 888999999999


Q ss_pred             CcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932          457 NSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP  536 (790)
Q Consensus       457 n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p  536 (790)
                      |++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..+++|+.|++++|++++..+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            99998778889999999999999999999889999999999999999999999889999999999999999999997766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=8.8e-20  Score=206.03  Aligned_cols=215  Identities=20%  Similarity=0.162  Sum_probs=126.9

Q ss_pred             CCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccc
Q 036932          372 SNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLE  450 (790)
Q Consensus       372 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~  450 (790)
                      ..++.|+.|++++|+++ .+|..++.+.. |+.|++++|......|..+.           .+...+..|..+ .+++|+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~  412 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKE-LQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLK  412 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHH-HHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhcc
Confidence            44566666666666665 55666666665 66666655432111111110           111233334443 455555


Q ss_pred             eee-ccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCC
Q 036932          451 HLY-LQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN  529 (790)
Q Consensus       451 ~L~-L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N  529 (790)
                      .|+ ++.|.+.           .|+.+.+++|.+++..+      ..|+.|++++|.+++ +|. ++.+++|+.|+|++|
T Consensus       413 ~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N  473 (567)
T 1dce_A          413 AVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN  473 (567)
T ss_dssp             HHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred             cCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence            555 4444332           23333444444442211      136677777777764 454 677777777777777


Q ss_pred             cCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCc
Q 036932          530 RISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGS  609 (790)
Q Consensus       530 ~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  609 (790)
                      +++ .+|..++.                                                                    
T Consensus       474 ~l~-~lp~~~~~--------------------------------------------------------------------  484 (567)
T 1dce_A          474 RLR-ALPPALAA--------------------------------------------------------------------  484 (567)
T ss_dssp             CCC-CCCGGGGG--------------------------------------------------------------------
T ss_pred             ccc-ccchhhhc--------------------------------------------------------------------
Confidence            777 66654432                                                                    


Q ss_pred             ccccceEEECCCCcccccCChhhhhce-ecceeccCCcccccc-CccccCCCCCCEEEccCCcccccCCcc---ccCCCC
Q 036932          610 NIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSI-PGSFSNLKWIESLDLSHNRLSGQVPPR---LTELNF  684 (790)
Q Consensus       610 ~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~lsg~ip~~---l~~l~~  684 (790)
                       ++.|+.|+|++|++++ +| .++.+. |+.|+|++|+|++.+ |..|+++++|+.|||++|+|++.+|..   +..+++
T Consensus       485 -l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~  561 (567)
T 1dce_A          485 -LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS  561 (567)
T ss_dssp             -CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred             -CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence             4567777777777774 56 666666 777888888888776 888888888888888888888765532   233677


Q ss_pred             CCeEec
Q 036932          685 LSNFNV  690 (790)
Q Consensus       685 L~~L~l  690 (790)
                      |+.||+
T Consensus       562 L~~L~l  567 (567)
T 1dce_A          562 VSSILT  567 (567)
T ss_dssp             CSEEEC
T ss_pred             cCccCC
Confidence            777764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=4.5e-17  Score=184.96  Aligned_cols=193  Identities=20%  Similarity=0.263  Sum_probs=137.4

Q ss_pred             cccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEE
Q 036932          277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFL  356 (790)
Q Consensus       277 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  356 (790)
                      +..+..+.++.+.+.+..+  +..+++|+.|++++|.+. .++.  +..+++|+.|+|++|.+.+..+  +..+++|+.|
T Consensus        20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence            4456666777777765443  456778888888888876 5653  4678888888888888876554  7778888888


Q ss_pred             EcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932          357 YLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL  436 (790)
Q Consensus       357 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  436 (790)
                      +|++|.+++ ++ .+..+++|+.|+|++|++.+ + +.+..++. |+.|++++|.+++.  ..+..+++|+.|+|++|.+
T Consensus        93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~-L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A           93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTT-CSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred             ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCc-cCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence            888888874 23 57778888888888888874 2 34666666 77777777777654  5666777777777777777


Q ss_pred             cCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCccccc
Q 036932          437 SGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGV  486 (790)
Q Consensus       437 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~  486 (790)
                      ++..+ ...+++|+.|+|++|++++.  ..+..+++|+.|+|++|++.+.
T Consensus       166 ~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          166 SDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            76655 22677777777777777743  3567777777777777777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=3.4e-19  Score=201.24  Aligned_cols=183  Identities=21%  Similarity=0.219  Sum_probs=138.5

Q ss_pred             cccccceeeccCCcCccccchhhcCCCCCcEEeccCCc-------------ccccCchhhhcCccccEEe-ccCcccccc
Q 036932          445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNR-------------FSGVIPHQISESLTLRFLL-LRGNYLEGQ  510 (790)
Q Consensus       445 ~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~~  510 (790)
                      .++.|+.|+|++|+++ .+|..+..+++|+.|++++|.             ..+.+|..++.+++|+.|+ ++.|.+...
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            3455666666666665 556666666666666665553             4556666777777777777 455443211


Q ss_pred             CCc-----cccC--CCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCC
Q 036932          511 IPN-----QLCQ--LRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGN  583 (790)
Q Consensus       511 ~~~-----~l~~--l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  583 (790)
                      ...     .+..  ...|+.|+|++|++++ +|. ++                                           
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~-------------------------------------------  460 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LE-------------------------------------------  460 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GG-------------------------------------------
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCC-CcC-cc-------------------------------------------
Confidence            000     0000  1358999999999985 664 32                                           


Q ss_pred             CcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCC
Q 036932          584 GVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIE  662 (790)
Q Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~  662 (790)
                                                .++.|+.|+|++|+++ .+|..++.+. |+.|+|++|+|++ +| .++++++|+
T Consensus       461 --------------------------~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~  511 (567)
T 1dce_A          461 --------------------------QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ  511 (567)
T ss_dssp             --------------------------GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred             --------------------------ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence                                      2568999999999999 8999999998 9999999999997 77 899999999


Q ss_pred             EEEccCCcccccC-CccccCCCCCCeEecccCcceecCCCC
Q 036932          663 SLDLSHNRLSGQV-PPRLTELNFLSNFNVSFNNLSGLIPDK  702 (790)
Q Consensus       663 ~LdLs~N~lsg~i-p~~l~~l~~L~~L~ls~N~l~g~iP~~  702 (790)
                      .|||++|+|++.+ |..++.+++|+.|+|++|++++.+|..
T Consensus       512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            9999999999988 999999999999999999999987754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=7.8e-18  Score=162.85  Aligned_cols=113  Identities=26%  Similarity=0.309  Sum_probs=90.2

Q ss_pred             cccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 036932          611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFN  689 (790)
Q Consensus       611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~  689 (790)
                      ++.|+.|+|++|++++.+|..++.+. |+.|+|++|+|++..|..|+++++|+.|||++|+|++.+|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            45777888888888877788888776 99999999999988888899999999999999999999999999999999999


Q ss_pred             cccCcceecCCCCCcCCCcCcccccCCcCCCCCC
Q 036932          690 VSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPT  723 (790)
Q Consensus       690 ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~  723 (790)
                      |++|+++|.+|......++....+.++...|+.|
T Consensus       133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            9999999988743222222333345555556554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=3.3e-18  Score=199.42  Aligned_cols=195  Identities=19%  Similarity=0.141  Sum_probs=129.6

Q ss_pred             EEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCcc
Q 036932          428 LLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNY  506 (790)
Q Consensus       428 ~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  506 (790)
                      .+++..|.+. ..+..+ .++.|+.|+|++|.+. .+|..++.+++|++|+|++|+|+ .+|..+..+++|++|+|++|+
T Consensus       205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR  281 (727)
T ss_dssp             ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred             Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence            3445556655 445555 8899999999999998 78888889999999999999999 889999999999999999999


Q ss_pred             ccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcc
Q 036932          507 LEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVY  586 (790)
Q Consensus       507 l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  586 (790)
                      |+ .+|..+..+++|+.|+|++|.|+ .+|..++                                              
T Consensus       282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~----------------------------------------------  313 (727)
T 4b8c_D          282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFG----------------------------------------------  313 (727)
T ss_dssp             CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTT----------------------------------------------
T ss_pred             CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhh----------------------------------------------
Confidence            99 78999999999999999999997 7776542                                              


Q ss_pred             cccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce--ecceeccCCccccccCccccCCCCCCEE
Q 036932          587 SIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ--IRGLNLSYNFLSGSIPGSFSNLKWIESL  664 (790)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~--L~~L~Ls~N~l~g~ip~~l~~l~~L~~L  664 (790)
                                             .++.|+.|+|++|.|+|.+|..++.+.  ...++|++|.++|.+|..      |+.|
T Consensus       314 -----------------------~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l  364 (727)
T 4b8c_D          314 -----------------------NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFI  364 (727)
T ss_dssp             -----------------------SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred             -----------------------cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------ccee
Confidence                                   257899999999999999999988765  456899999999999965      5567


Q ss_pred             EccCC--------cccccCCccccCCCCCCeEecccCcceecCCCC
Q 036932          665 DLSHN--------RLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK  702 (790)
Q Consensus       665 dLs~N--------~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  702 (790)
                      ++++|        .|.+.++..+..+..+....+++|-+.+.....
T Consensus       365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~~~  410 (727)
T 4b8c_D          365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYATP  410 (727)
T ss_dssp             -------------------------------------CCCGGGCCT
T ss_pred             EeecccccccccCCccccccchhhcccccceeeeeccccccccCcc
Confidence            77777        566666667777888888999999998665544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.5e-17  Score=169.39  Aligned_cols=170  Identities=19%  Similarity=0.208  Sum_probs=132.5

Q ss_pred             cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEE
Q 036932          445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVL  524 (790)
Q Consensus       445 ~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L  524 (790)
                      .+.++..+++++|.+++ ++ .+..+++|+.|++++|+++. ++ .+..+++|+.|++++|++++..+  +..+++|+.|
T Consensus        17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            45667777888888874 33 56777888888888888874 44 67788888888888888886544  7888888888


Q ss_pred             EccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeecccee
Q 036932          525 DLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYE  604 (790)
Q Consensus       525 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  604 (790)
                      ++++|++++ +|..                                                                  
T Consensus        91 ~L~~N~l~~-l~~~------------------------------------------------------------------  103 (263)
T 1xeu_A           91 SVNRNRLKN-LNGI------------------------------------------------------------------  103 (263)
T ss_dssp             ECCSSCCSC-CTTC------------------------------------------------------------------
T ss_pred             ECCCCccCC-cCcc------------------------------------------------------------------
Confidence            888888873 3310                                                                  


Q ss_pred             cccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCC
Q 036932          605 LYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELN  683 (790)
Q Consensus       605 ~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~  683 (790)
                          .. +.|+.|++++|++++ +| .++.+. |+.|+|++|++++. | .++.+++|+.|||++|++++.  ..+..++
T Consensus       104 ----~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~  172 (263)
T 1xeu_A          104 ----PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLK  172 (263)
T ss_dssp             ----CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCC
T ss_pred             ----cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCC
Confidence                01 468888899988885 43 466676 89999999999865 4 688899999999999999876  6788899


Q ss_pred             CCCeEecccCcceec
Q 036932          684 FLSNFNVSFNNLSGL  698 (790)
Q Consensus       684 ~L~~L~ls~N~l~g~  698 (790)
                      +|+.|++++|++++.
T Consensus       173 ~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          173 KVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCCEEEEEEEEEECC
T ss_pred             CCCEEeCCCCcccCC
Confidence            999999999998875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=6.3e-17  Score=160.10  Aligned_cols=153  Identities=20%  Similarity=0.192  Sum_probs=118.5

Q ss_pred             EEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCC
Q 036932          379 ELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMN  457 (790)
Q Consensus       379 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n  457 (790)
                      .++++++.++ .+|..+.   ..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|+|++|
T Consensus        15 ~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             EEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            4455555554 3443322   226666666666665555667777788888888888887777777 7888888888888


Q ss_pred             cCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccC
Q 036932          458 SLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSI  535 (790)
Q Consensus       458 ~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~  535 (790)
                      ++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.+..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            888655556788899999999999999888888999999999999999999888888999999999999999988543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=7.5e-17  Score=183.11  Aligned_cols=195  Identities=19%  Similarity=0.196  Sum_probs=158.4

Q ss_pred             ccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEE
Q 036932          301 MKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNEL  380 (790)
Q Consensus       301 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  380 (790)
                      +..+..+.+..+.+.+.++.   ..+++|+.|++++|.+...  +.+..+++|+.|+|++|.+++..+  +..+++|+.|
T Consensus        20 l~~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             HHHHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence            45677788888888754443   4678999999999999764  358889999999999999987655  8899999999


Q ss_pred             EcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCc
Q 036932          381 DISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLS  460 (790)
Q Consensus       381 ~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~  460 (790)
                      +|++|.+.+ +| .+..++. |+.|++++|.+.+.  ..+..+++|+.|+|++|.+++. +....+++|+.|+|++|.++
T Consensus        93 ~Ls~N~l~~-l~-~l~~l~~-L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           93 FLDENKIKD-LS-SLKDLKK-LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             ECCSSCCCC-CT-TSTTCTT-CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCC
T ss_pred             ECcCCCCCC-Ch-hhccCCC-CCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCC
Confidence            999999985 33 6777777 99999999998863  4588889999999999998876 33337889999999999998


Q ss_pred             cccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCC
Q 036932          461 GPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIP  512 (790)
Q Consensus       461 ~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~  512 (790)
                      +..|  +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++.+...
T Consensus       167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            7655  88889999999999998864  358888899999999998876533

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=1.7e-16  Score=158.11  Aligned_cols=155  Identities=20%  Similarity=0.150  Sum_probs=122.7

Q ss_pred             CcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeecc
Q 036932          377 LNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQ  455 (790)
Q Consensus       377 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~  455 (790)
                      .+.++.+++.+. .+|..+.   .+++.|++++|.+++..|..+..+++|++|++++|.+++..+..+ .+++|++|+|+
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            344555555554 4444332   226666666666666666677777788888888888877776766 78899999999


Q ss_pred             CCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccC
Q 036932          456 MNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSI  535 (790)
Q Consensus       456 ~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~  535 (790)
                      +|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            99998766777888999999999999998 67888999999999999999999877788999999999999999999766


Q ss_pred             C
Q 036932          536 P  536 (790)
Q Consensus       536 p  536 (790)
                      +
T Consensus       176 ~  176 (229)
T 3e6j_A          176 R  176 (229)
T ss_dssp             G
T ss_pred             c
Confidence            5

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=8.1e-17  Score=156.53  Aligned_cols=128  Identities=21%  Similarity=0.332  Sum_probs=97.5

Q ss_pred             cCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEE
Q 036932           33 ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVL  112 (790)
Q Consensus        33 ~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  112 (790)
                      +.+++|++|++++|.++.++.+..+++|++|++++|.+...   ..+..+++|++|++++|.+.+..+..++.+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc---hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            56778888888888888666788888888888888877643   357788888888888888887777788888888888


Q ss_pred             EccCCCCCCCChhhhcCCCCCCEEeCcCCc-CccccchhhhhCCCCCcEEEccCC
Q 036932          113 DISYNQLSGTLPSAITTLTSLEYLALLDNN-FEGTFLLNSLANHSKLEVLLLSSR  166 (790)
Q Consensus       113 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~L~~n  166 (790)
                      ++++|++++..|..++.+++|++|++++|. ++ .++  .+.++++|++|++++|
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFD  169 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTB
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCC
Confidence            888888887777888888888888888887 44 333  3555555555555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=8.6e-17  Score=156.35  Aligned_cols=81  Identities=19%  Similarity=0.272  Sum_probs=43.4

Q ss_pred             cceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 036932          613 YMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVS  691 (790)
Q Consensus       613 ~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls  691 (790)
                      .|+.|++++|++++..|..++.+. |+.|+|++|++.+.+| .++.+++|+.|++++|++++ +| .+..+++|++|+++
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAF  189 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEEC
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEee
Confidence            344444444444444444444444 5555555555222344 46666777777777777765 33 56667777777777


Q ss_pred             cCcce
Q 036932          692 FNNLS  696 (790)
Q Consensus       692 ~N~l~  696 (790)
                      +|++.
T Consensus       190 ~N~i~  194 (197)
T 4ezg_A          190 SQTIG  194 (197)
T ss_dssp             BC---
T ss_pred             CcccC
Confidence            77654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=5.4e-17  Score=173.84  Aligned_cols=157  Identities=26%  Similarity=0.209  Sum_probs=101.7

Q ss_pred             CcEEEcccccCcCCCchhhh-hccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeec
Q 036932          377 LNELDISNNLLSGHIPHWIG-NFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYL  454 (790)
Q Consensus       377 L~~L~Ls~n~l~~~~p~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L  454 (790)
                      ++.|++++|++++..+..+. .+.. |+.|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|+|
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~-L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTN-LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCCCCccChhhhhhcccc-cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            44444444444433333333 3333 4444444444444444555666667777777777776666656 6777777777


Q ss_pred             cCCcCccccchhhcCCCCCcEEeccCCcccccCchhh---hcCccccEEeccCccccccCCccccCCCC--CCEEEccCC
Q 036932          455 QMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQI---SESLTLRFLLLRGNYLEGQIPNQLCQLRR--LGVLDLSHN  529 (790)
Q Consensus       455 ~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~~~~l~~l~~--L~~L~Ls~N  529 (790)
                      ++|++++..|..|..+++|+.|+|++|++++..+..+   ..+++|+.|+|++|++++..+..+..++.  ++.|+|++|
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            7787776667777778888888888888876544444   56788888888888888666566777776  478999999


Q ss_pred             cCccc
Q 036932          530 RISGS  534 (790)
Q Consensus       530 ~l~g~  534 (790)
                      ++.+.
T Consensus       200 ~~~C~  204 (361)
T 2xot_A          200 PLECD  204 (361)
T ss_dssp             CEECC
T ss_pred             CccCC
Confidence            88754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=1.5e-16  Score=153.87  Aligned_cols=89  Identities=22%  Similarity=0.243  Sum_probs=58.6

Q ss_pred             ccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932          612 KYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV  690 (790)
Q Consensus       612 ~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l  690 (790)
                      +.|+.|+|++|++++..|..++.+. |+.|+|++|+|++.+|..|+.+++|+.|||++|.+++..+...- ...++...+
T Consensus        78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~  156 (192)
T 1w8a_A           78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSL  156 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCC
Confidence            4555566666666655555566665 88888888888888888899999999999999999887663210 011222234


Q ss_pred             ccCcceecCCC
Q 036932          691 SFNNLSGLIPD  701 (790)
Q Consensus       691 s~N~l~g~iP~  701 (790)
                      ..+...+.-|.
T Consensus       157 ~~~~~~C~~P~  167 (192)
T 1w8a_A          157 NGGAARCGAPS  167 (192)
T ss_dssp             SGGGCBBCSST
T ss_pred             CCCCCCCCCCh
Confidence            44555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=5.8e-17  Score=171.39  Aligned_cols=220  Identities=11%  Similarity=0.103  Sum_probs=142.9

Q ss_pred             CCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCC---CCcccccCCCCCCcc
Q 036932          106 LSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRT---NMLSVKTENFLPTFQ  182 (790)
Q Consensus       106 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~---~~~~~~~~~~~~~~~  182 (790)
                      +++|+.|+|++ +++.+.+.+|.+|++|+.+++++|.+. .++...|..+.++..+......   ....+....|..+..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            56666666655 555444555666666666666655554 4444555555555544443311   011122223444445


Q ss_pred             ce-EEeCCCCCCCCcchhhh----CCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCE
Q 036932          183 LK-VLGLPNYNLKVIPSFLL----HQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHH  257 (790)
Q Consensus       183 L~-~L~l~~n~l~~lp~~l~----~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  257 (790)
                      |+ .+.+...  +.++..+.    ...+++.+.+.++-.. .....+...+++|+.+++++|.++......|..+.+|+.
T Consensus       178 L~~~i~~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          178 LETTIQVGAM--GKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             CEEEEEECTT--CCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             cceeEEecCC--CcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            54 3333322  23333322    2345677777665322 222233335788888888888888877777888888999


Q ss_pred             EEeecCCCCccCChhHHhhccccc-EecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEc
Q 036932          258 LDVSNNNLTGKLPEDMGIILQKLL-YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDL  334 (790)
Q Consensus       258 L~Ls~n~l~~~~p~~~~~~l~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L  334 (790)
                      +++.+| +. .++...|..+++|+ .+++.+ .++...+.+|.++++|+.++++.|+++ .++...|.++++|+.++.
T Consensus       255 l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          255 IKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred             EECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhcc
Confidence            999887 66 78888888899999 999988 777677788999999999999999998 899888999999998863

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=3.2e-16  Score=165.62  Aligned_cols=284  Identities=13%  Similarity=0.081  Sum_probs=188.8

Q ss_pred             CCCCcEEeccCCcccccccCCCC-CCCCCCEEEeecCCCC--ccCChhHHhhcccccEecccCCccccccchhhhc----
Q 036932          228 NTKLEALFLTNNSFTGNLQLPKT-KHDFLHHLDVSNNNLT--GKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGE----  300 (790)
Q Consensus       228 l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~Ls~n~l~--~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~----  300 (790)
                      +.+++.|.++++--.... ..+. .+++|++|||++|++.  ...+ .   .++.++.+.+..+.+   .+.+|.+    
T Consensus        24 ~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~-~---~~~~~~~~~~~~~~I---~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKA-G---TYPNGKFYIYMANFV---PAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESS-S---SSGGGCCEEECTTEE---CTTTTEEEETT
T ss_pred             hCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCcc-c---ccccccccccccccc---CHHHhcccccc
Confidence            356777777764211000 0111 2677888888888876  1111 1   122234444444432   2344555    


Q ss_pred             ----ccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCccc----ccccccccC
Q 036932          301 ----MKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKF----SGKIEEGLS  372 (790)
Q Consensus       301 ----l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~  372 (790)
                          +++|+.+++.+ .++ .++...|.+|++|+.+++.+|.+....+.+|.++.++..+....+..    .......|.
T Consensus        96 ~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             cccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence                88888888888 776 78888888888888888888888777777777777777776655321    222334455


Q ss_pred             CCCCCc-EEEcccccCcCCCchhhhhc---cCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-ccc
Q 036932          373 NSNELN-ELDISNNLLSGHIPHWIGNF---SSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLS  447 (790)
Q Consensus       373 ~l~~L~-~L~Ls~n~l~~~~p~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~  447 (790)
                      .+..|+ .+.+....   .++..+...   ..++..+.+.++-...........|++|+.+++++|.++...+..| +++
T Consensus       174 ~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~  250 (329)
T 3sb4_A          174 EGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK  250 (329)
T ss_dssp             ESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred             cccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence            566666 44443321   233322211   2225666665543222222222248899999999999998888888 899


Q ss_pred             ccceeeccCCcCccccchhhcCCCCCc-EEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEc
Q 036932          448 SLEHLYLQMNSLSGPIPIALFRSSNLI-TLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDL  526 (790)
Q Consensus       448 ~L~~L~L~~n~l~~~~p~~~~~~~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L  526 (790)
                      +|+.+++.+| ++..-+.+|.+|++|+ .+++.+ +++...+.+|.+|++|+.+++++|.++...+.+|.++++|+.++.
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9999999988 7756677899999999 999998 788777889999999999999999999888889999999998864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=3.9e-16  Score=158.96  Aligned_cols=170  Identities=22%  Similarity=0.310  Sum_probs=113.5

Q ss_pred             CCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEE
Q 036932          326 CISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVL  405 (790)
Q Consensus       326 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L  405 (790)
                      +.+++.++++++.+.+..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++.               
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~---------------   78 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL---------------   78 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC---------------
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC---------------
Confidence            345566667777766433  45566677777777776663 33 455666666666666666532               


Q ss_pred             EccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccc
Q 036932          406 LMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSG  485 (790)
Q Consensus       406 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~  485 (790)
                                .+  +..+++|++|++++|.+++..+.. . ++|++|++++|++++ ++ .+..+++|+.|++++|++++
T Consensus        79 ----------~~--l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           79 ----------SP--LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             ----------GG--GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB
T ss_pred             ----------hh--hccCCCCCEEECCCCccCCcCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC
Confidence                      22  445556666666666666533222 2 677788888887775 33 57778888888888888875


Q ss_pred             cCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCccc
Q 036932          486 VIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS  534 (790)
Q Consensus       486 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~  534 (790)
                      . + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            4 3 677788888888888888766  5677888888888888887743

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.63  E-value=8.5e-15  Score=158.80  Aligned_cols=317  Identities=15%  Similarity=0.150  Sum_probs=188.6

Q ss_pred             cCceeeeChhhhcCCCCCCEEEcCCCCCCccc--cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCccc
Q 036932           21 ASNILFFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGH   98 (790)
Q Consensus        21 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~   98 (790)
                      ..++++|...+|.++++|+.+.+..+ ++.+.  +|.+|++|+.+++..+ ++ .+...+|..+.+|+.+.+..+ +...
T Consensus        56 ~y~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i  131 (394)
T 4fs7_A           56 KYDVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSI  131 (394)
T ss_dssp             EEEEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred             eeeEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeee
Confidence            34688899999999999999999854 66443  6999999999999866 54 334467889999998887754 4445


Q ss_pred             CCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCC
Q 036932           99 LPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFL  178 (790)
Q Consensus        99 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~  178 (790)
                      -..+|.++..++......  ...+...+|.++++|+.+.+.++..  .+....|.++.+|+.+++..+  ...+....|.
T Consensus       132 ~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~  205 (394)
T 4fs7_A          132 GVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFA  205 (394)
T ss_dssp             CTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT--CCEECTTTTT
T ss_pred             cceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC--ceEeCchhhc
Confidence            566777776555444333  2324456788899999998876542  466677888888888888754  3455555677


Q ss_pred             CCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEE
Q 036932          179 PTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHL  258 (790)
Q Consensus       179 ~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  258 (790)
                      .+..|+.+.+..+.. .+........+|+.+.+... ++ .+....+.++..++.+.+..+... .....+..+..++.+
T Consensus       206 ~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~  281 (394)
T 4fs7_A          206 ECILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKV  281 (394)
T ss_dssp             TCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEE
T ss_pred             cccccceeecCCCce-EeehhhcccCCCceEEECCC-ce-ecccccccccccceeEEcCCCcce-eecccccccccccee
Confidence            777777766655432 23333444556666666543 22 344444556666666666554322 222334455555555


Q ss_pred             EeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCc
Q 036932          259 DVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNN  338 (790)
Q Consensus       259 ~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~  338 (790)
                      ....+    .++...+..+.+|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++ .++...|.+|.+|+.+++..+ 
T Consensus       282 ~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-  353 (394)
T 4fs7_A          282 IYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-  353 (394)
T ss_dssp             EECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-
T ss_pred             ccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-
Confidence            55443    233334444555555555433 33233444555555555555432 33 444444555555555555433 


Q ss_pred             CcccccccccCCCCCcEEEcC
Q 036932          339 FYGQIFPKYMNLTQLEFLYLE  359 (790)
Q Consensus       339 l~~~~~~~~~~l~~L~~L~L~  359 (790)
                      +......+|.+|++|+.+++.
T Consensus       354 l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          354 LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             CCEECTTTBTTCTTCCEEEEE
T ss_pred             ccEehHHHhhCCCCCCEEEEC
Confidence            333333444455555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=6.5e-16  Score=149.22  Aligned_cols=90  Identities=27%  Similarity=0.274  Sum_probs=78.7

Q ss_pred             cccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 036932          611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFN  689 (790)
Q Consensus       611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~  689 (790)
                      ++.|+.|||++|++++..|..+..+. |+.|+|++|+|++..|..|+++++|+.|+|++|+|++..+..|..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            45677778888888766666777776 99999999999988889999999999999999999988888899999999999


Q ss_pred             cccCcceecCC
Q 036932          690 VSFNNLSGLIP  700 (790)
Q Consensus       690 ls~N~l~g~iP  700 (790)
                      +++|++.|.++
T Consensus       133 L~~N~~~C~c~  143 (193)
T 2wfh_A          133 IGANPLYCDCN  143 (193)
T ss_dssp             CCSSCEECSGG
T ss_pred             eCCCCeecCCc
Confidence            99999998765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=3.3e-14  Score=153.33  Aligned_cols=264  Identities=13%  Similarity=0.150  Sum_probs=163.3

Q ss_pred             CCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceE
Q 036932          106 LSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKV  185 (790)
Q Consensus       106 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~  185 (790)
                      +..++.+.+.++ ++.+...+|.++ +|+.+.+..+ ++ .+....|.++ +|+.+.+..  ....+....|..+.+|+.
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCe
Confidence            355666666543 444445566664 5677766555 33 4555566663 577776664  344555566777777777


Q ss_pred             EeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCC
Q 036932          186 LGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNL  265 (790)
Q Consensus       186 L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l  265 (790)
                      +++..|++..++...+.+.+|+.+.+..+ ++ .++...|.++++|+.+++..+ ++......+.. .+|+.+.+ .+.+
T Consensus       185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i  259 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGV  259 (401)
T ss_dssp             EECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTC
T ss_pred             eecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCc
Confidence            77777778777776666788888888754 55 677777778888888888764 44443344544 66777777 3445


Q ss_pred             CccCChhHHhhcccccEecccCCccc-----cccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCc
Q 036932          266 TGKLPEDMGIILQKLLYIDMSDNRFE-----GYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFY  340 (790)
Q Consensus       266 ~~~~p~~~~~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  340 (790)
                      + .++...|..+++|+.+++.++.+.     ...+.+|.++++|+.+++.+ .++ .++...|.+|++|+.+.+..+ +.
T Consensus       260 ~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          260 T-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             C-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CC
T ss_pred             c-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-cc
Confidence            5 677777777777777777776554     24445566666666666663 344 566666666666666666433 44


Q ss_pred             ccccccccCCCCCcEEEcCCcccccccccccCCCC-CCcEEEccccc
Q 036932          341 GQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSN-ELNELDISNNL  386 (790)
Q Consensus       341 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~  386 (790)
                      .....+|.++ +|+.+++.+|.+....+..|..++ .++.|.+..+.
T Consensus       336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            4444556666 666666666655544444555443 45555555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=3.5e-15  Score=140.89  Aligned_cols=60  Identities=22%  Similarity=0.153  Sum_probs=37.8

Q ss_pred             ecceeccCCccccc-cCccccCCCCCCEEEccCCcccccCC---ccccCCCCCCeEecccCcce
Q 036932          637 IRGLNLSYNFLSGS-IPGSFSNLKWIESLDLSHNRLSGQVP---PRLTELNFLSNFNVSFNNLS  696 (790)
Q Consensus       637 L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~lsg~ip---~~l~~l~~L~~L~ls~N~l~  696 (790)
                      |+.|+|++|++++. .+..++.+++|+.||+++|++++..+   ..+..+++|++|++++|.+.
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            44555555555532 12556677777777777777775555   46677777777777777665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.5e-15  Score=138.78  Aligned_cols=82  Identities=22%  Similarity=0.216  Sum_probs=63.1

Q ss_pred             cccceEEECCCCcccccCChhhhhce-ecceeccCCccccc-cCccccCCCCCCEEEccCCcccccCC---ccccCCCCC
Q 036932          611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGS-IPGSFSNLKWIESLDLSHNRLSGQVP---PRLTELNFL  685 (790)
Q Consensus       611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~lsg~ip---~~l~~l~~L  685 (790)
                      ++.|+.|++++|++++.+|..++.+. |+.|++++|++++. .|..++.+++|+.||+++|++++..+   ..+..+++|
T Consensus        63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  142 (149)
T 2je0_A           63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL  142 (149)
T ss_dssp             CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence            45677777777777766776666665 88888888888763 45778888999999999999987766   578888889


Q ss_pred             CeEeccc
Q 036932          686 SNFNVSF  692 (790)
Q Consensus       686 ~~L~ls~  692 (790)
                      ++||+++
T Consensus       143 ~~L~l~d  149 (149)
T 2je0_A          143 TYLDGYD  149 (149)
T ss_dssp             CEETTBC
T ss_pred             ccccCCC
Confidence            9888863

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=5.5e-14  Score=151.61  Aligned_cols=270  Identities=11%  Similarity=0.148  Sum_probs=144.0

Q ss_pred             CCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEe
Q 036932           58 KNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA  137 (790)
Q Consensus        58 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  137 (790)
                      ..++.+.+..+ ++. +...+|.++ +|+.+.+..+ +..+-..+|.++ +|+.+++.. .++.+.+.+|.+|++|+.++
T Consensus       113 ~~l~~i~ip~~-i~~-I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPNS-VKS-IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCTT-CCE-ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECCc-cCE-ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            44555555432 321 222344443 4555555443 443444455443 455555553 34434444555555555555


Q ss_pred             CcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCC
Q 036932          138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLV  217 (790)
Q Consensus       138 Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~  217 (790)
                      +.+|.++ .++...|. +++|+.+.+..+  ...+....|..+.+|+.+.+..+ +..++...+...+|+.+.+. +.++
T Consensus       187 l~~n~l~-~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          187 LSKTKIT-KLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVT  260 (401)
T ss_dssp             CTTSCCS-EECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCC
T ss_pred             cCCCcce-EechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCcc
Confidence            5555554 34444444 345555555422  23333334444444444444432 33333322222445555552 2233


Q ss_pred             CcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchh
Q 036932          218 GDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSS  297 (790)
Q Consensus       218 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~  297 (790)
                       .++...|.+|++|+.+.+.++.+..                   +.. ..++...|..+++|+.+++.+ .++..-..+
T Consensus       261 -~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~-~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a  318 (401)
T 4fdw_A          261 -NIASRAFYYCPELAEVTTYGSTFND-------------------DPE-AMIHPYCLEGCPKLARFEIPE-SIRILGQGL  318 (401)
T ss_dssp             -EECTTTTTTCTTCCEEEEESSCCCC-------------------CTT-CEECTTTTTTCTTCCEECCCT-TCCEECTTT
T ss_pred             -EEChhHhhCCCCCCEEEeCCccccC-------------------Ccc-cEECHHHhhCCccCCeEEeCC-ceEEEhhhh
Confidence             3444444445555544444443320                   011 146666666777788887773 466556667


Q ss_pred             hhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCC-CCcEEEcCCcccc
Q 036932          298 IGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLT-QLEFLYLENNKFS  364 (790)
Q Consensus       298 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~  364 (790)
                      |.++++|+.+.+..+ ++ .++...|.++ +|+.+++.+|.+.......|.+++ .++.+.+..+.+.
T Consensus       319 F~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          319 LGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             TTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             hcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            777888888888554 54 7777778888 888888888887766666777774 6788888776543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=1.1e-14  Score=138.73  Aligned_cols=90  Identities=23%  Similarity=0.208  Sum_probs=70.7

Q ss_pred             ccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932          612 KYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV  690 (790)
Q Consensus       612 ~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l  690 (790)
                      +.|+.|++++|++++..+..++.+. |+.|+|++|++++..+..++++++|+.|||++|+|++..+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence            4566666666666644444455665 888888888888777777889999999999999999777777788999999999


Q ss_pred             ccCcceecCCC
Q 036932          691 SFNNLSGLIPD  701 (790)
Q Consensus       691 s~N~l~g~iP~  701 (790)
                      ++|+++|.+|.
T Consensus       132 ~~N~~~~~~~~  142 (177)
T 2o6r_A          132 HTNPWDCSCPR  142 (177)
T ss_dssp             CSSCBCCCHHH
T ss_pred             cCCCeeccCcc
Confidence            99999988773

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=8.3e-15  Score=138.30  Aligned_cols=115  Identities=21%  Similarity=0.179  Sum_probs=70.1

Q ss_pred             chhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccC-chhhhc
Q 036932          416 IPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVI-PHQISE  493 (790)
Q Consensus       416 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~-p~~~~~  493 (790)
                      +|..+..+++|++|++++|.+++.  ..+ .+++|++|++++|++++.+|..+..+++|++|++++|++++.. +..+..
T Consensus        41 i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~  118 (168)
T 2ell_A           41 IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKK  118 (168)
T ss_dssp             CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSS
T ss_pred             HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhc
Confidence            333344444555555555555544  222 5666666666666666556666666667777777777666432 155666


Q ss_pred             CccccEEeccCccccccCC---ccccCCCCCCEEEccCCcCc
Q 036932          494 SLTLRFLLLRGNYLEGQIP---NQLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       494 l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~Ls~N~l~  532 (790)
                      +++|++|++++|.+++..+   ..+..+++|+.|++++|.+.
T Consensus       119 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          119 LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            6777777777777765444   36666777777777777665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.54  E-value=1.8e-13  Score=148.43  Aligned_cols=287  Identities=13%  Similarity=0.047  Sum_probs=120.1

Q ss_pred             cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCC
Q 036932           53 GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTS  132 (790)
Q Consensus        53 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  132 (790)
                      +|.+|++|+.+.+..+ ++. +...+|.++.+|+.+++.++ +..+-..+|.++++|+.+.+..+ +..+...+|.++..
T Consensus        66 AF~~c~~L~~i~lp~~-i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~  141 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST-VRE-IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTCTTEEEEECCTT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred             HhhCCCCceEEEeCCC-ccC-cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence            4555666666666433 332 22345555555555555433 33333445555555555544433 32233334444433


Q ss_pred             CCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEcc
Q 036932          133 LEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLS  212 (790)
Q Consensus       133 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls  212 (790)
                      ++........   .+....|.++++|+.+.+..+.  ..+....|.                       .+.+|+.+++.
T Consensus       142 ~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~-----------------------~c~~L~~i~l~  193 (394)
T 4fs7_A          142 KEITIPEGVT---VIGDEAFATCESLEYVSLPDSM--ETLHNGLFS-----------------------GCGKLKSIKLP  193 (394)
T ss_dssp             SEEECCTTCC---EECTTTTTTCTTCCEEECCTTC--CEECTTTTT-----------------------TCTTCCBCCCC
T ss_pred             cccccCcccc---ccchhhhcccCCCcEEecCCcc--ceecccccc-----------------------CCCCceEEEcC
Confidence            3222222211   1222344445555555443221  222223333                       34444444444


Q ss_pred             CCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCcccc
Q 036932          213 GNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEG  292 (790)
Q Consensus       213 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~  292 (790)
                      .+ ++ .++...+.++..|+.+.+..+...-.  ........|+.+.+... +. .+....+..+..++.+.+..+... 
T Consensus       194 ~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~--~~~~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-  266 (394)
T 4fs7_A          194 RN-LK-IIRDYCFAECILLENMEFPNSLYYLG--DFALSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-  266 (394)
T ss_dssp             TT-CC-EECTTTTTTCTTCCBCCCCTTCCEEC--TTTTTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-
T ss_pred             CC-ce-EeCchhhccccccceeecCCCceEee--hhhcccCCCceEEECCC-ce-ecccccccccccceeEEcCCCcce-
Confidence            33 22 33344444455555444433322110  11112334444444322 12 333333344455555555444322 


Q ss_pred             ccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccC
Q 036932          293 YLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLS  372 (790)
Q Consensus       293 ~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  372 (790)
                      .....+..+..++.+.....    .++...|.++.+|+.+.+..+ +..+...+|.++++|+.+++..+ ++.....+|.
T Consensus       267 i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  340 (394)
T 4fs7_A          267 IGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR  340 (394)
T ss_dssp             ECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT
T ss_pred             eeccccccccccceeccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc
Confidence            33334444444444443332    233334445555555555432 33333344555555555555432 3333344455


Q ss_pred             CCCCCcEEEccc
Q 036932          373 NSNELNELDISN  384 (790)
Q Consensus       373 ~l~~L~~L~Ls~  384 (790)
                      ++.+|+.+++..
T Consensus       341 ~c~~L~~i~lp~  352 (394)
T 4fs7_A          341 GCTSLSNINFPL  352 (394)
T ss_dssp             TCTTCCEECCCT
T ss_pred             CCCCCCEEEECc
Confidence            555555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.3e-14  Score=133.96  Aligned_cols=125  Identities=22%  Similarity=0.228  Sum_probs=83.8

Q ss_pred             CeEEEccCcccc-ccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEecc
Q 036932          402 LKVLLMSKMFLK-GNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLR  479 (790)
Q Consensus       402 L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~  479 (790)
                      ++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+ .+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus        19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            555555555554 45555555666677777777766665  333 66777777777777776667666667777777777


Q ss_pred             CCccccc-CchhhhcCccccEEeccCccccccCC---ccccCCCCCCEEEccC
Q 036932          480 DNRFSGV-IPHQISESLTLRFLLLRGNYLEGQIP---NQLCQLRRLGVLDLSH  528 (790)
Q Consensus       480 ~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~Ls~  528 (790)
                      +|++++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.||+++
T Consensus        97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            7777753 33667777777777777777776555   4677777777777753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=3.7e-16  Score=151.98  Aligned_cols=153  Identities=22%  Similarity=0.274  Sum_probs=107.1

Q ss_pred             cCCCCCcEEeccCCcccccCch------hhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHH
Q 036932          468 FRSSNLITLDLRDNRFSGVIPH------QISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTI  541 (790)
Q Consensus       468 ~~~~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~  541 (790)
                      .....++.++++.+.+++..|.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3344555555555555555554      67777777777777777775 55 6777777888888888776 55644322


Q ss_pred             HHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCC
Q 036932          542 MLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSC  621 (790)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  621 (790)
                                                                                           ++.|+.|++++
T Consensus        92 ---------------------------------------------------------------------~~~L~~L~L~~  102 (198)
T 1ds9_A           92 ---------------------------------------------------------------------ADTLEELWISY  102 (198)
T ss_dssp             ---------------------------------------------------------------------HHHCSEEEEEE
T ss_pred             ---------------------------------------------------------------------CCcCCEEECcC
Confidence                                                                                 34677888888


Q ss_pred             CcccccCChhhhhce-ecceeccCCccccccC-ccccCCCCCCEEEccCCcccccCCcc----------ccCCCCCCeEe
Q 036932          622 NQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIP-GSFSNLKWIESLDLSHNRLSGQVPPR----------LTELNFLSNFN  689 (790)
Q Consensus       622 N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip-~~l~~l~~L~~LdLs~N~lsg~ip~~----------l~~l~~L~~L~  689 (790)
                      |++++ +| .++.+. |+.|++++|++++..+ ..++.+++|+.|++++|.+++.+|..          +..++.|++||
T Consensus       103 N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          103 NQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            88874 45 566665 8888888888885433 57888888999999999888887764          77788888876


Q ss_pred             cccCcce
Q 036932          690 VSFNNLS  696 (790)
Q Consensus       690 ls~N~l~  696 (790)
                        +|+++
T Consensus       181 --~~~i~  185 (198)
T 1ds9_A          181 --GMPVD  185 (198)
T ss_dssp             --CGGGT
T ss_pred             --CcccC
Confidence              55544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=1.5e-13  Score=132.58  Aligned_cols=124  Identities=23%  Similarity=0.319  Sum_probs=77.3

Q ss_pred             CEEEcCCCCCCccc-cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCC
Q 036932           39 KILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYN  117 (790)
Q Consensus        39 ~~L~Ls~n~i~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  117 (790)
                      ++++++++.++.++ .+.  ++|++|++++|.++.++  ..+..+++|++|+|++|.+++..+.+|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip--~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP--KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC--GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH--HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45666666666333 232  46666666666666332  35666666666666666666666666666666677777666


Q ss_pred             CCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCC
Q 036932          118 QLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRT  167 (790)
Q Consensus       118 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~  167 (790)
                      ++++..|..|..+++|++|+|++|.++ .++...|..+++|+.|++++|+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCC
Confidence            666666666666666677776666666 3444456666666666666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=3.3e-14  Score=135.24  Aligned_cols=134  Identities=23%  Similarity=0.275  Sum_probs=113.3

Q ss_pred             hhhcCCCCCCEEEcCCCCCCccccCcCCC-CCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCC
Q 036932           30 VGFANLTNLKILDLSGCGITTLQGLTKLK-NLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSH  108 (790)
Q Consensus        30 ~~~~~l~~L~~L~Ls~n~i~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  108 (790)
                      ..+.++++|++|++++|+++.++.+..+. +|++|++++|.+++.   ..+..+++|++|++++|.+.+..+..|..+++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            35778899999999999999777777666 999999999999865   46889999999999999999776666789999


Q ss_pred             CcEEEccCCCCCCCChh--hhcCCCCCCEEeCcCCcCccccchh---hhhCCCCCcEEEccCCCC
Q 036932          109 LKVLDISYNQLSGTLPS--AITTLTSLEYLALLDNNFEGTFLLN---SLANHSKLEVLLLSSRTN  168 (790)
Q Consensus       109 L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~---~l~~l~~L~~L~L~~n~~  168 (790)
                      |++|++++|++. .+|.  .+..+++|++|++++|.++ .++..   .+..+++|+.|+++.|..
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            999999999997 4555  7899999999999999997 44543   578899999999887753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=7.5e-14  Score=132.96  Aligned_cols=132  Identities=20%  Similarity=0.182  Sum_probs=107.1

Q ss_pred             CeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccC
Q 036932          402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRD  480 (790)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~  480 (790)
                      .+.++++++.++ .+|..+  .++|+.|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            345555555554 233322  2578888888888887777666 788999999999999876667788999999999999


Q ss_pred             CcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932          481 NRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP  536 (790)
Q Consensus       481 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p  536 (790)
                      |++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99998877788999999999999999997777778889999999999999998766

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=9.7e-14  Score=130.95  Aligned_cols=90  Identities=24%  Similarity=0.214  Sum_probs=84.1

Q ss_pred             ccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932          612 KYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV  690 (790)
Q Consensus       612 ~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l  690 (790)
                      +.++.|+|++|++++..|..++.+. |+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..|..+++|++|+|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            4789999999999988899999987 999999999999888888999999999999999999988888999999999999


Q ss_pred             ccCcceecCCC
Q 036932          691 SFNNLSGLIPD  701 (790)
Q Consensus       691 s~N~l~g~iP~  701 (790)
                      ++|++++.++.
T Consensus       110 ~~N~~~c~c~~  120 (170)
T 3g39_A          110 LNNPWDCACSD  120 (170)
T ss_dssp             CSSCBCTTBGG
T ss_pred             CCCCCCCCchh
Confidence            99999998764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=3.5e-13  Score=127.53  Aligned_cols=90  Identities=24%  Similarity=0.228  Sum_probs=82.6

Q ss_pred             ccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932          612 KYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV  690 (790)
Q Consensus       612 ~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l  690 (790)
                      +.++.|+|++|++++..|..++.+. |+.|+|++|+|++..+..|+++++|+.|||++|+|++..|..|..+++|++|+|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            4789999999999988899999987 999999999999877777899999999999999999887777999999999999


Q ss_pred             ccCcceecCCC
Q 036932          691 SFNNLSGLIPD  701 (790)
Q Consensus       691 s~N~l~g~iP~  701 (790)
                      ++|++.+.++.
T Consensus       113 ~~N~~~c~~~~  123 (174)
T 2r9u_A          113 YNNPWDCECRD  123 (174)
T ss_dssp             CSSCBCTTBGG
T ss_pred             CCCCccccccc
Confidence            99999987653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=7e-15  Score=142.91  Aligned_cols=131  Identities=21%  Similarity=0.267  Sum_probs=72.4

Q ss_pred             hhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCC
Q 036932          394 WIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSN  472 (790)
Q Consensus       394 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~  472 (790)
                      .+..++. |+.|++++|.+++ +| .+..+++|++|++++|.++. +|..+ .+++|++|++++|++++ +| .+..+++
T Consensus        43 ~~~~l~~-L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKA-CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTT-CSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCC-CCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            4444444 4444444444443 33 44445555555555555553 23333 44566666666666664 33 4555666


Q ss_pred             CcEEeccCCcccccCc-hhhhcCccccEEeccCccccccCCc----------cccCCCCCCEEEccCCcCc
Q 036932          473 LITLDLRDNRFSGVIP-HQISESLTLRFLLLRGNYLEGQIPN----------QLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       473 L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~----------~l~~l~~L~~L~Ls~N~l~  532 (790)
                      |++|++++|++++..+ ..+..+++|++|++++|.+.+..|.          .+..+++|+.||  +|.++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            6666666666664322 3456666666666666666655443          256677777776  55554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.39  E-value=8.6e-13  Score=125.37  Aligned_cols=105  Identities=15%  Similarity=0.167  Sum_probs=62.0

Q ss_pred             CCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCch--hhhcCccccEEec
Q 036932          425 SLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPH--QISESLTLRFLLL  502 (790)
Q Consensus       425 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L  502 (790)
                      +|++|++++|.+++. +....+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|.  .+..+++|+.|++
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEe
Confidence            444444555444443 11115556666666666666433334466666677777777665 3343  5666677777777


Q ss_pred             cCccccccCCc----cccCCCCCCEEEccCCcCc
Q 036932          503 RGNYLEGQIPN----QLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       503 ~~N~l~~~~~~----~l~~l~~L~~L~Ls~N~l~  532 (790)
                      ++|.++ .+|.    .+..+++|+.||+++|.+.
T Consensus       121 ~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          121 LRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777776 3344    3667777777777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.39  E-value=2e-11  Score=132.20  Aligned_cols=160  Identities=12%  Similarity=0.166  Sum_probs=103.1

Q ss_pred             ceeeeChhhhcCCC-CCCEEEcCCCCCCcc--ccCcCCCCCCEEeCCCCC---CCCCcCccccCCCCCCCEEecCCCcCc
Q 036932           23 NILFFIVVGFANLT-NLKILDLSGCGITTL--QGLTKLKNLEALDLSYNN---ISGSSESQGVCELKNLSEFILRGINIK   96 (790)
Q Consensus        23 ~~~~~~~~~~~~l~-~L~~L~Ls~n~i~~~--~~l~~l~~L~~L~Ls~n~---i~~~~~~~~~~~l~~L~~L~L~~n~l~   96 (790)
                      .++.|...+|.+++ .|+.+.+..+ ++.+  .+|.+|++|+.+.++.|.   ++ .+...+|..+.+|+.+.+..+ +.
T Consensus        50 ~Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~  126 (394)
T 4gt6_A           50 PVSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VT  126 (394)
T ss_dssp             EEEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CS
T ss_pred             eeeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cc
Confidence            36778888898885 5899998764 5544  368899999999887653   43 233457788888888777654 44


Q ss_pred             ccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCC
Q 036932           97 GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTEN  176 (790)
Q Consensus        97 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~  176 (790)
                      .+...+|..+.+|+.+.+..+ +..+....|.++.+|+.+.+..+ ++ .+....|.+ .+|+.+.+..+.  ..+....
T Consensus       127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~~--~~i~~~a  200 (394)
T 4gt6_A          127 EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAKV--TRIGTNA  200 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTTC--CEECTTT
T ss_pred             eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccccc-cceeEEEECCcc--cccccch
Confidence            455567788888888888654 44355567788888888887654 22 344445543 567777665432  2333334


Q ss_pred             CCCCccceEEeCCCC
Q 036932          177 FLPTFQLKVLGLPNY  191 (790)
Q Consensus       177 ~~~~~~L~~L~l~~n  191 (790)
                      |..+..++.......
T Consensus       201 f~~c~~l~~~~~~~~  215 (394)
T 4gt6_A          201 FSECFALSTITSDSE  215 (394)
T ss_dssp             TTTCTTCCEEEECCS
T ss_pred             hhhccccceeccccc
Confidence            555555555544433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.36  E-value=2.2e-11  Score=131.80  Aligned_cols=133  Identities=11%  Similarity=0.175  Sum_probs=65.2

Q ss_pred             chhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCC
Q 036932          295 PSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNS  374 (790)
Q Consensus       295 p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  374 (790)
                      ..+|..+..|+.+.+..+..  .+....|.++++|+.+.+. +.+......+|.++.+|+.+.+..+ ++.+...+|.+|
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C  333 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC  333 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             cceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence            33455555555555544332  3455555556666666654 3344344445556666666666543 443444556666


Q ss_pred             CCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932          375 NELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL  436 (790)
Q Consensus       375 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  436 (790)
                      .+|+.+.+..+ ++..-...|.++.+ |+.+++.++...   ...+..+.+|+.+.+..+.+
T Consensus       334 ~~L~~i~ip~s-v~~I~~~aF~~C~~-L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPESAFSNCTA-LNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTCCEEEECTT-CCBCCGGGGTTCTT-CCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             CCCCEEEECcc-cCEEhHhHhhCCCC-CCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            66666666433 44333455556655 666666655432   13455667777777666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=3.5e-12  Score=120.18  Aligned_cols=109  Identities=21%  Similarity=0.175  Sum_probs=95.5

Q ss_pred             CCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCc
Q 036932          426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN  505 (790)
Q Consensus       426 L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  505 (790)
                      .+.+++++|.++......  .++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            567888888887644333  378999999999999888889999999999999999999888888899999999999999


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932          506 YLEGQIPNQLCQLRRLGVLDLSHNRISGSIP  536 (790)
Q Consensus       506 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p  536 (790)
                      ++++..+..+..+++|+.|+|++|++.+..+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9998888889999999999999999996654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=9.6e-12  Score=117.57  Aligned_cols=115  Identities=17%  Similarity=0.129  Sum_probs=95.2

Q ss_pred             CCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCc
Q 036932          426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN  505 (790)
Q Consensus       426 L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  505 (790)
                      -+.+++++|.++..+...  .++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            367888888886544333  378999999999999888889999999999999999999877777899999999999999


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCcccCChhHHHHH
Q 036932          506 YLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIML  543 (790)
Q Consensus       506 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~  543 (790)
                      ++++..+..+..+++|+.|+|++|++.+. |..+..+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~-~~~~~~l~  128 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE-CRDIMYLR  128 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT-BGGGHHHH
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc-cccHHHHH
Confidence            99977777799999999999999999844 43343333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=9e-13  Score=140.71  Aligned_cols=108  Identities=20%  Similarity=0.228  Sum_probs=46.8

Q ss_pred             CCCEEecCCccccCcccccc--cccccceeeccCCcCccccchhh-----cCCCCCcEEeccCCccccc----Cchhhhc
Q 036932          425 SLNLLSVSENCLSGPMTSSF--NLSSLEHLYLQMNSLSGPIPIAL-----FRSSNLITLDLRDNRFSGV----IPHQISE  493 (790)
Q Consensus       425 ~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~~-----~~~~~L~~L~L~~N~l~~~----~p~~~~~  493 (790)
                      +|+.|++++|.+++.....+  .+++|++|+|++|.++......+     ...++|+.|+|++|.++..    ++..+..
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  181 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG  181 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence            45555555554443222222  33455555555555543222222     1234555555555555431    2222234


Q ss_pred             CccccEEeccCcccccc----CCccccCCCCCCEEEccCCcCc
Q 036932          494 SLTLRFLLLRGNYLEGQ----IPNQLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       494 l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~  532 (790)
                      +++|++|+|++|.+++.    ++..+...++|+.|+|++|.|+
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            44455555555544332    1233334444555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=1.5e-12  Score=138.88  Aligned_cols=186  Identities=20%  Similarity=0.158  Sum_probs=82.9

Q ss_pred             ccccEecccCCccccccchhhhcc-----cccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccc-----
Q 036932          278 QKLLYIDMSDNRFEGYLPSSIGEM-----KALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKY-----  347 (790)
Q Consensus       278 ~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----  347 (790)
                      +.|++|++++|.++......+...     ++|++|+|++|.+...-...+...+++|+.|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            345555555555443333333222     3555555555555422222222334455555555555543322222     


Q ss_pred             cCCCCCcEEEcCCcccccc----cccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccC
Q 036932          348 MNLTQLEFLYLENNKFSGK----IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH  423 (790)
Q Consensus       348 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  423 (790)
                      ...++|++|++++|.++..    ++..+..+++|++|+|++|.+......                     .++..+...
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~---------------------~L~~~L~~~  210 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE---------------------LLAAQLDRN  210 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH---------------------HHHHHGGGC
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH---------------------HHHHHHhcC
Confidence            1234555555555555421    222334455555555555555421100                     123334444


Q ss_pred             CCCCEEecCCccccCcccccc-----cccccceeeccCCcCccccchhhcCC---C--CCcEEe--ccCCccc
Q 036932          424 GSLNLLSVSENCLSGPMTSSF-----NLSSLEHLYLQMNSLSGPIPIALFRS---S--NLITLD--LRDNRFS  484 (790)
Q Consensus       424 ~~L~~L~l~~n~l~~~~~~~~-----~l~~L~~L~L~~n~l~~~~p~~~~~~---~--~L~~L~--L~~N~l~  484 (790)
                      ++|+.|++++|.+++.....+     ..++|++|+|++|.+++.....+..+   .  .|+.+.  +..+.++
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            556666666666554322211     34566666666666664433333222   1  166666  6666555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=2.8e-11  Score=128.72  Aligned_cols=89  Identities=20%  Similarity=0.172  Sum_probs=81.4

Q ss_pred             cccceEEECCC-CcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeE
Q 036932          611 IKYMVGLDLSC-NQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNF  688 (790)
Q Consensus       611 l~~L~~L~Ls~-N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L  688 (790)
                      ++.|+.|+|++ |+|++..|..++.+. |+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            46799999996 999988888899997 99999999999999999999999999999999999988777777777 9999


Q ss_pred             ecccCcceecCC
Q 036932          689 NVSFNNLSGLIP  700 (790)
Q Consensus       689 ~ls~N~l~g~iP  700 (790)
                      +|++|+|.+.++
T Consensus       109 ~l~~N~~~c~c~  120 (347)
T 2ifg_A          109 VLSGNPLHCSCA  120 (347)
T ss_dssp             ECCSSCCCCCGG
T ss_pred             EeeCCCccCCCc
Confidence            999999998764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=7.6e-11  Score=125.32  Aligned_cols=107  Identities=21%  Similarity=0.208  Sum_probs=90.4

Q ss_pred             eEEECCCC-cccccCChhhhhce-ecceeccC-CccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 036932          615 VGLDLSCN-QLTGGIPSEIGDLQ-IRGLNLSY-NFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVS  691 (790)
Q Consensus       615 ~~L~Ls~N-~l~g~ip~~~~~l~-L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls  691 (790)
                      ..++++++ +|+ .||. ++.+. |+.|+|++ |+|++..|..|+++++|+.|||++|+|++.+|..|..+++|++|||+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35799998 898 6898 88887 99999996 99999988999999999999999999999999999999999999999


Q ss_pred             cCcceecCCCCCcCCCcCcccccCCcCCCCCC
Q 036932          692 FNNLSGLIPDKGQFATFDESSYRGNLHLCGPT  723 (790)
Q Consensus       692 ~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~  723 (790)
                      +|+|++..|.......+....+.+|+.-|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            99999765544322235556677888777543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.08  E-value=5.8e-09  Score=112.16  Aligned_cols=121  Identities=10%  Similarity=0.069  Sum_probs=67.6

Q ss_pred             CCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCc
Q 036932          249 KTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCIS  328 (790)
Q Consensus       249 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~  328 (790)
                      +..+..|+.+.+..+ ++ .+....+..+.+|+.+.+..+ +......+|.++++|+.+.+.++.++ .++...|.+|.+
T Consensus       236 f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~  311 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVK  311 (379)
T ss_dssp             TTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTT
T ss_pred             ccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCC
Confidence            344455555555443 33 444455555556666665433 33233445566666666666666665 666666666777


Q ss_pred             CcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCC
Q 036932          329 LGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSN  375 (790)
Q Consensus       329 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  375 (790)
                      |+.+.+..+ ++.+...+|.++++|+.+.+..+ ++.+-..+|.+++
T Consensus       312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            777776543 44444556667777777766543 4434445555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.00  E-value=2.4e-08  Score=107.34  Aligned_cols=270  Identities=11%  Similarity=0.039  Sum_probs=111.1

Q ss_pred             cCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhh
Q 036932          219 DFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSI  298 (790)
Q Consensus       219 ~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l  298 (790)
                      .|++..|.+|.+|+.+.+..+ ++......+..+ +|+.+.+..+ +. .+....|.. .+|+.+.+..+-.. .....|
T Consensus        59 ~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~L~~i~lp~~~~~-i~~~~F  132 (379)
T 4h09_A           59 SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TDLDDFEFPGATTE-IGNYIF  132 (379)
T ss_dssp             EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CCCSEEECCTTCCE-ECTTTT
T ss_pred             ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CCcccccCCCcccc-cccccc
Confidence            344444445555555555332 332222333333 3444444322 33 344444432 35555555443211 222223


Q ss_pred             hcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCccc------------ccccccCCCCCcEEEcCCcccccc
Q 036932          299 GEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQ------------IFPKYMNLTQLEFLYLENNKFSGK  366 (790)
Q Consensus       299 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~------------~~~~~~~l~~L~~L~L~~n~l~~~  366 (790)
                      .++ +++.+.+..+ ++ .+....|..+..++.+.+..+.....            ....+.....+..+.+..... ..
T Consensus       133 ~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i  208 (379)
T 4h09_A          133 YNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TV  208 (379)
T ss_dssp             TTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EE
T ss_pred             ccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EE
Confidence            222 3333333322 22 33344445555565555544332111            111233334444444433221 12


Q ss_pred             cccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-c
Q 036932          367 IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-N  445 (790)
Q Consensus       367 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~  445 (790)
                      ....+..+..++.+.+..+ +.......+.++.. |+.+.+..+ ++..-..++.++.+|+.+.+..+ +.......| .
T Consensus       209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~-L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~  284 (379)
T 4h09_A          209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKA-LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG  284 (379)
T ss_dssp             CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSS-CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT
T ss_pred             eecccccccccceeeeccc-eeEEccccccCCcc-ceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccc
Confidence            3334445555555555433 22122333444444 555544433 22223334444555555555432 222223333 4


Q ss_pred             ccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEecc
Q 036932          446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLR  503 (790)
Q Consensus       446 l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  503 (790)
                      +++|+.+.+.++.++..-+.+|.+|.+|+.++|..+ ++.....+|.+|.+|+.+.+.
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            455555555544444333444555555555555433 333333445555555555444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=6.2e-09  Score=109.96  Aligned_cols=135  Identities=18%  Similarity=0.143  Sum_probs=59.0

Q ss_pred             cCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhc--cCCCCCEEecCC--ccccCcc-----c
Q 036932          371 LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL--NHGSLNLLSVSE--NCLSGPM-----T  441 (790)
Q Consensus       371 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~--n~l~~~~-----~  441 (790)
                      +..+++|+.|.+++|.-. .++. +. .++ |+.|++..+.+.......+.  .+++|+.|+|+.  |...+..     .
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~-L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPN-LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-CB-CTT-CSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-cc-CCC-CcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            344455555555554211 1121 11 222 55555555554433333333  456666666642  1111110     0


Q ss_pred             ccc---cccccceeeccCCcCccccchhhc---CCCCCcEEeccCCcccccC----chhhhcCccccEEeccCccccc
Q 036932          442 SSF---NLSSLEHLYLQMNSLSGPIPIALF---RSSNLITLDLRDNRFSGVI----PHQISESLTLRFLLLRGNYLEG  509 (790)
Q Consensus       442 ~~~---~l~~L~~L~L~~n~l~~~~p~~~~---~~~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~  509 (790)
                      ..+   .+++|++|+|.+|.+++..+..+.   .+++|++|+|+.|.+++..    +..+..+++|+.|++++|.++.
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            011   245566666655555433322222   2445555555555555422    2222334555555555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=7.9e-09  Score=109.13  Aligned_cols=80  Identities=16%  Similarity=0.119  Sum_probs=36.8

Q ss_pred             cccccceeeccCCcCc---------cccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccc
Q 036932          445 NLSSLEHLYLQMNSLS---------GPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQL  515 (790)
Q Consensus       445 ~l~~L~~L~L~~n~l~---------~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l  515 (790)
                      .+++|+.|.+......         +.++..+..+++|+.|+|++|.-. .++. + .+++|+.|++..|.+.......+
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence            4567777766544321         123334445555666666555211 1111 2 24555555555555443322222


Q ss_pred             c--CCCCCCEEEcc
Q 036932          516 C--QLRRLGVLDLS  527 (790)
Q Consensus       516 ~--~l~~L~~L~Ls  527 (790)
                      +  .+++|+.|+|+
T Consensus       214 ~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          214 LGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHSBCTTCCEEEEE
T ss_pred             HHccCCCCcEEEEe
Confidence            2  45555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.50  E-value=4.6e-08  Score=93.08  Aligned_cols=119  Identities=13%  Similarity=0.095  Sum_probs=84.9

Q ss_pred             eeChhhhcCCCCCCEEEcCCC-CCC------ccccCcCCCCCCEEeCCCCCCCCCcC---ccccCCCCCCCEEecCCCcC
Q 036932           26 FFIVVGFANLTNLKILDLSGC-GIT------TLQGLTKLKNLEALDLSYNNISGSSE---SQGVCELKNLSEFILRGINI   95 (790)
Q Consensus        26 ~~~~~~~~~l~~L~~L~Ls~n-~i~------~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~L~~n~l   95 (790)
                      +.....+...+.|++|+|++| .|.      ....+...++|++|+|++|.|.....   ...+...++|++|+|++|.|
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            344567888999999999999 887      23467788999999999999873221   12344557788888888887


Q ss_pred             ccc----CCcccCCCCCCcEEEc--cCCCCCCC----ChhhhcCCCCCCEEeCcCCcCc
Q 036932           96 KGH----LPDCLKNLSHLKVLDI--SYNQLSGT----LPSAITTLTSLEYLALLDNNFE  144 (790)
Q Consensus        96 ~~~----~~~~~~~l~~L~~L~L--s~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~  144 (790)
                      ...    +..++...+.|++|+|  ++|.|...    +...+...++|++|++++|.+.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            643    4556677778888888  77877643    2334555677888888777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=6.6e-08  Score=92.02  Aligned_cols=117  Identities=15%  Similarity=0.163  Sum_probs=80.8

Q ss_pred             chhhhccCCCCCEEecCCc-cccCccccc----c-cccccceeeccCCcCccc----cchhhcCCCCCcEEeccCCcccc
Q 036932          416 IPAQLLNHGSLNLLSVSEN-CLSGPMTSS----F-NLSSLEHLYLQMNSLSGP----IPIALFRSSNLITLDLRDNRFSG  485 (790)
Q Consensus       416 ~~~~~~~~~~L~~L~l~~n-~l~~~~~~~----~-~l~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~L~~N~l~~  485 (790)
                      +...+..+++|++|++++| .+.......    + ..++|++|+|++|.+...    +...+...++|++|+|++|+|+.
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3445556677777777777 665432221    2 456788888888887642    34455666788888888888875


Q ss_pred             c----CchhhhcCccccEEec--cCcccccc----CCccccCCCCCCEEEccCCcCc
Q 036932          486 V----IPHQISESLTLRFLLL--RGNYLEGQ----IPNQLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       486 ~----~p~~~~~l~~L~~L~L--~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~  532 (790)
                      .    +...+...++|++|+|  ++|.+...    +...+...++|+.|+|++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            4    3455666778889998  78888754    3345556788999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=1.6e-07  Score=93.92  Aligned_cols=82  Identities=22%  Similarity=0.305  Sum_probs=63.5

Q ss_pred             EECCCCcccccCChhh----hhce-ecceeccCCcccc--ccCccccCCCCCCEEEccCCcccccCCccccCCC--CCCe
Q 036932          617 LDLSCNQLTGGIPSEI----GDLQ-IRGLNLSYNFLSG--SIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELN--FLSN  687 (790)
Q Consensus       617 L~Ls~N~l~g~ip~~~----~~l~-L~~L~Ls~N~l~g--~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~--~L~~  687 (790)
                      ++++.|... .++..+    ..+. |+.|+||+|+|++  .+|..++.+++|+.||||+|+|++.  ..+..+.  .|+.
T Consensus       148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~  224 (267)
T 3rw6_A          148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEE  224 (267)
T ss_dssp             CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSE
T ss_pred             ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcce
Confidence            778888543 333322    3344 9999999999998  5678888999999999999999976  3344444  8999


Q ss_pred             EecccCcceecCCC
Q 036932          688 FNVSFNNLSGLIPD  701 (790)
Q Consensus       688 L~ls~N~l~g~iP~  701 (790)
                      |+|++|++++.+|.
T Consensus       225 L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          225 LWLDGNSLCDTFRD  238 (267)
T ss_dssp             EECTTSTTGGGCSS
T ss_pred             EEccCCcCccccCc
Confidence            99999999988874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=6.3e-07  Score=89.51  Aligned_cols=78  Identities=27%  Similarity=0.282  Sum_probs=65.4

Q ss_pred             ccccceEEECCCCcccc--cCChhhhhce-ecceeccCCccccccCccccCCC--CCCEEEccCCcccccCCc-------
Q 036932          610 NIKYMVGLDLSCNQLTG--GIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLK--WIESLDLSHNRLSGQVPP-------  677 (790)
Q Consensus       610 ~l~~L~~L~Ls~N~l~g--~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~--~L~~LdLs~N~lsg~ip~-------  677 (790)
                      .++.|+.|+||+|+|++  .+|..++.+. |+.|+|++|+|++.  ..+..++  +|++|+|++|.+++.+|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            47899999999999998  6677777887 99999999999976  3445555  999999999999988773       


Q ss_pred             cccCCCCCCeEe
Q 036932          678 RLTELNFLSNFN  689 (790)
Q Consensus       678 ~l~~l~~L~~L~  689 (790)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            367788998886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.72  E-value=1.6e-05  Score=73.49  Aligned_cols=84  Identities=10%  Similarity=-0.066  Sum_probs=66.5

Q ss_pred             cccceeeccCCcCccccchhhcCCCCCcEEeccCCc-ccccCchhhhcC----ccccEEeccCcc-ccccCCccccCCCC
Q 036932          447 SSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNR-FSGVIPHQISES----LTLRFLLLRGNY-LEGQIPNQLCQLRR  520 (790)
Q Consensus       447 ~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~~~~l~~l~~  520 (790)
                      ..|+.||+++|.++..--..+..|++|+.|+|++|. +++..-..+..+    ++|++|+|++|. ++...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468899999998876555667889999999999995 775544556653    479999999984 87665566788999


Q ss_pred             CCEEEccCCc
Q 036932          521 LGVLDLSHNR  530 (790)
Q Consensus       521 L~~L~Ls~N~  530 (790)
                      |+.|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999986

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.49  E-value=5.8e-05  Score=69.67  Aligned_cols=36  Identities=11%  Similarity=0.104  Sum_probs=21.5

Q ss_pred             CCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCc
Q 036932          107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNN  142 (790)
Q Consensus       107 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  142 (790)
                      .+|++||++++.++...-..+..+++|++|+|++|.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            456666666666654444455566666666666663

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.30  E-value=0.00028  Score=62.09  Aligned_cols=59  Identities=22%  Similarity=0.165  Sum_probs=45.7

Q ss_pred             ceeccCCccc-cccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecC
Q 036932          639 GLNLSYNFLS-GSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLI  699 (790)
Q Consensus       639 ~L~Ls~N~l~-g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~i  699 (790)
                      .++-+++.++ ..+|..+.  ++|+.|||++|+|+...+..|..+++|++|+|++|++.+.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence            4666666665 35564433  46889999999999888888899999999999999998755

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.21  E-value=0.00023  Score=66.98  Aligned_cols=115  Identities=13%  Similarity=0.078  Sum_probs=71.7

Q ss_pred             hhhhcCCCCCCEEEcCCC-CCC------ccccCcCCCCCCEEeCCCCCCCCCcC---ccccCCCCCCCEEecCCCcCccc
Q 036932           29 VVGFANLTNLKILDLSGC-GIT------TLQGLTKLKNLEALDLSYNNISGSSE---SQGVCELKNLSEFILRGINIKGH   98 (790)
Q Consensus        29 ~~~~~~l~~L~~L~Ls~n-~i~------~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~L~~n~l~~~   98 (790)
                      ...+.+-+.|++|+|+++ +|.      +.+++...+.|+.|+|++|.|.+...   ..++..-+.|++|+|++|.|...
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            345667788999999885 776      23567788889999999998863221   12333456777777777777632


Q ss_pred             ----CCcccCCCCCCcEEEccCCCC---CCC----ChhhhcCCCCCCEEeCcCCcC
Q 036932           99 ----LPDCLKNLSHLKVLDISYNQL---SGT----LPSAITTLTSLEYLALLDNNF  143 (790)
Q Consensus        99 ----~~~~~~~l~~L~~L~Ls~n~i---~~~----~~~~~~~l~~L~~L~Ls~n~l  143 (790)
                          +.+++...+.|++|+|++|..   ...    +...+..-+.|+.|+++.|.+
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                344556666677777765432   211    222344455666666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.02  E-value=0.00058  Score=64.20  Aligned_cols=85  Identities=12%  Similarity=0.104  Sum_probs=44.4

Q ss_pred             cccceeeccCCcCccc----cchhhcCCCCCcEEeccCCcccccCc----hhhhcCccccEEeccCc---cccc----cC
Q 036932          447 SSLEHLYLQMNSLSGP----IPIALFRSSNLITLDLRDNRFSGVIP----HQISESLTLRFLLLRGN---YLEG----QI  511 (790)
Q Consensus       447 ~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~N---~l~~----~~  511 (790)
                      +.|+.|+|++|.+...    +.+.+...+.|+.|+|++|.|+....    .++.....|++|+|++|   .+..    .+
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            3455555555555421    23344445566666666666653322    23334455666666644   2222    13


Q ss_pred             CccccCCCCCCEEEccCCcC
Q 036932          512 PNQLCQLRRLGVLDLSHNRI  531 (790)
Q Consensus       512 ~~~l~~l~~L~~L~Ls~N~l  531 (790)
                      .+.+..-+.|+.|+++.|.+
T Consensus       150 a~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCcCeEeccCCCc
Confidence            34455567777888876654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.83  E-value=0.016  Score=50.66  Aligned_cols=56  Identities=18%  Similarity=0.189  Sum_probs=36.5

Q ss_pred             EEecCCCcCc-ccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCc
Q 036932           87 EFILRGINIK-GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFE  144 (790)
Q Consensus        87 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  144 (790)
                      .++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666554 23343322  35777888888877666667777777888888777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	790
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-09
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 89.3 bits (220), Expect = 2e-19
 Identities = 70/380 (18%), Positives = 131/380 (34%), Gaps = 35/380 (9%)

Query: 29  VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
            V   +L  +  L     GI ++ G+  L NL  ++ S N ++  +  + + +L ++   
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN 96

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
             +  +I             L    I+       L +      S   ++ +      T L
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 149 LNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKL 208
                 +   ++  L++ T +                    + N     S L    +L+ 
Sbjct: 157 QQLSFGNQVTDLKPLANLTTL---------------ERLDISSNKVSDISVLAKLTNLES 201

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGK 268
           L  + N +    P       T L+ L L  N       L    +  L  LD++NN ++  
Sbjct: 202 LIATNNQISDITPLG---ILTNLDELSLNGNQLKDIGTLASLTN--LTDLDLANNQISNL 256

Query: 269 LPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCIS 328
            P      L KL  + +  N+     P     +  L  L   + N +       ++   +
Sbjct: 257 APLSG---LTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKN 308

Query: 329 LGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS 388
           L  L L  NN          +LT+L+ L+  NNK S      L+N   +N L   +N +S
Sbjct: 309 LTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS 364

Query: 389 GHIPHWIGNFSSDLKVLLMS 408
              P  + N +  +  L ++
Sbjct: 365 DLTP--LANLTR-ITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.6 bits (187), Expect = 2e-15
 Identities = 79/449 (17%), Positives = 137/449 (30%), Gaps = 84/449 (18%)

Query: 33  ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG 92
             L       L    +T     T L  +  L      I                      
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK--------------------- 57

Query: 93  INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSL 152
            +I G     ++ L++L  ++ S NQL+   P  +  LT L  + + +N       L +L
Sbjct: 58  -SIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANL 109

Query: 153 ANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLS 212
            N +        +  N      +       L  L L +  +  I +        +L   +
Sbjct: 110 TNLT------GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 163

Query: 213 GNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPED 272
               +             + +  +++ S    L         L  L  +NN ++   P  
Sbjct: 164 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLT-------NLESLIATNNQISDITPLG 216

Query: 273 MGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLL 332
           +   L +L    ++ N+ +     ++  +  L  L L  N  S   P   L+G   L  L
Sbjct: 217 ILTNLDEL---SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTEL 268

Query: 333 DLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIP 392
            L  N            LT L  L L  N+         SN   L  L +  N +S   P
Sbjct: 269 KLGANQISN--ISPLAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP 324

Query: 393 HWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHL 452
             + + +                          L  L  + N +S   +S  NL+++  L
Sbjct: 325 --VSSLTK-------------------------LQRLFFANNKVSDV-SSLANLTNINWL 356

Query: 453 YLQMNSLSGPIPIALFRSSNLITLDLRDN 481
               N +S   P+A    + +  L L D 
Sbjct: 357 SAGHNQISDLTPLANL--TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.3 bits (181), Expect = 1e-14
 Identities = 65/359 (18%), Positives = 117/359 (32%), Gaps = 31/359 (8%)

Query: 182 QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSF 241
           Q+  L      +K I   + +  +L  ++ S N L    P   L+N TKL  + + NN  
Sbjct: 45  QVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQI 100

Query: 242 TGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMG-----------IILQKLLYIDMSDNRF 290
                L    +     L  +       L                  +  L  +       
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 291 EGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNL 350
            G   + +  +  L  L     + +      +L    +L  L  + N            L
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGIL 218

Query: 351 TQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM 410
           T L+ L L  N+        L++   L +LD++NN +S   P       + L  L +   
Sbjct: 219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGAN 273

Query: 411 FLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRS 470
            +    P   L   +              ++   NL +L +L L  N++S   P++    
Sbjct: 274 QISNISPLAGLTALTNL---ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL-- 328

Query: 471 SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN 529
           + L  L   +N+ S      ++    + +L    N +    P  L  L R+  L L+  
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 69.6 bits (169), Expect = 4e-13
 Identities = 64/339 (18%), Positives = 106/339 (31%), Gaps = 24/339 (7%)

Query: 31  GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISG-----SSESQGVCELKNL 85
           G   L NL  ++ S   +T +  L  L  L  + ++ N I+      +  +     L N 
Sbjct: 61  GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 86  SEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEG 145
               +  +    +L     + + +  +       S    S    +T L+ LA L      
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 146 TFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTF---QLKVLGLPNYNLKVIPSFLLH 202
               N +++ S L  L         + +  +  P      L  L L    LK I +    
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-AS 239

Query: 203 QYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSN 262
             +L  LDL+ N +    P   L   TKL  L L  N  +    L          L+ + 
Sbjct: 240 LTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296

Query: 263 NNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL 322
                         L+ L Y+ +  N      P  +  +  L  L    N  S       
Sbjct: 297 LE-----DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD---VSS 346

Query: 323 LTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENN 361
           L    ++  L    N           NLT++  L L + 
Sbjct: 347 LANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.7 bits (164), Expect = 2e-12
 Identities = 70/357 (19%), Positives = 109/357 (30%), Gaps = 44/357 (12%)

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGK 268
             L   N+        L   T L+A  L   S  G   L       L  ++ SNN LT  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN-----LTQINFSNNQLTDI 81

Query: 269 LPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCIS 328
            P      L  +L  +            +      L   ++   +    L         S
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 329 LGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGK---------IEEGLSNSNELNE 379
             + D+S  +    +          +   L N     +             L+    L  
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 380 LDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGP 439
           L  +NN +S   P       ++L  L ++   LK      L +  +L  L ++ N +S  
Sbjct: 202 LIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256

Query: 440 MTSSFNLSSLEHLYLQMNSLSGPIPIALFRS--------------------SNLITLDLR 479
              S  L+ L  L L  N +S   P+A   +                     NL  L L 
Sbjct: 257 APLS-GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315

Query: 480 DNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
            N  S + P  +S    L+ L    N +     + L  L  +  L   HN+IS   P
Sbjct: 316 FNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.9 bits (162), Expect = 2e-12
 Identities = 73/405 (18%), Positives = 132/405 (32%), Gaps = 60/405 (14%)

Query: 301 MKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLEN 360
           +   +   L K N +  +    L    +L    L   +  G        L  L  +   N
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSN 75

Query: 361 NKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGN--FSSDLKVLLMSKMFLKGNIPA 418
           N+ +      L N  +L ++ ++NN ++   P           L    ++ +    N+  
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 419 QLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPI-----------PIAL 467
                 S N +S              +  +       + +L+                 L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 468 FRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLS 527
            + +NL +L   +N+ S + P  I  +L    L L GN L+      L  L  L  LDL+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNL--DELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 528 HNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYS 587
           +N+IS   P      L      + L    +   S +   +  T      +     + +  
Sbjct: 250 NNQISNLAPLSGLTKLT----ELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS- 304

Query: 588 IFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL-QIRGLNLSYNF 646
                                 N+K +  L L  N ++   P  +  L +++ L  + N 
Sbjct: 305 ----------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNK 340

Query: 647 LSGSIPGSFSNLKWIESLDLSHNRLSGQVP----PRLTELNFLSN 687
           +S     S +NL  I  L   HN++S   P     R+T+L     
Sbjct: 341 VSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.9 bits (162), Expect = 3e-12
 Identities = 73/420 (17%), Positives = 132/420 (31%), Gaps = 39/420 (9%)

Query: 86  SEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEG 145
           S  I +   I     D    L+      +    ++ T+    T L  +  L       + 
Sbjct: 3   SATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS 58

Query: 146 TFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYD 205
              ++ +   + L  +  S+  N L+    +  P   L         L  I        D
Sbjct: 59  ---IDGVEYLNNLTQINFSN--NQLT----DITPLKNLT-------KLVDILMNNNQIAD 102

Query: 206 LKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNL 265
           +  L    N          + +   L+ L   N     +  +               +  
Sbjct: 103 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 162

Query: 266 TGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTG 325
                      L  L  +D+S N+        + ++  L  L    N  S   P  +   
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGI--- 217

Query: 326 CISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNN 385
             +L  L L+GN           +LT L  L L NN+ S      LS   +L EL +  N
Sbjct: 218 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 386 LLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFN 445
            +S   P           +  +     +    + + N  +L  L++  N +S     S +
Sbjct: 274 QISNISPLA-----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS-S 327

Query: 446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN 505
           L+ L+ L+   N +S    +A    +N+  L    N+ S + P  ++    +  L L   
Sbjct: 328 LTKLQRLFFANNKVSDVSSLANL--TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 2e-08
 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 20  NASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGV 79
                    +   A LT L  L+L+   +  +  ++ LKNL  L L +NNIS  S    V
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---V 325

Query: 80  CELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALL 139
             L  L         +       L NL+++  L   +NQ+S   P  +  LT +  L L 
Sbjct: 326 SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 381

Query: 140 DN 141
           D 
Sbjct: 382 DQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 43/292 (14%), Positives = 92/292 (31%), Gaps = 51/292 (17%)

Query: 454 LQMNSLSGPIPIA-LFRSSNL---ITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEG 509
           L   +++   PI  +F  + L   +   L     +  +    ++   +  L      ++ 
Sbjct: 1   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK- 57

Query: 510 QIPNQLCQLRRLGVLDLSHNRISGSIP------------SCLTIMLLWVAGNVYLHEPYL 557
            I   +  L  L  ++ S+N+++   P            +   I  +    N+       
Sbjct: 58  SIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 116

Query: 558 QFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYN---------- 607
            F + I          +        N +  I            +                
Sbjct: 117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 176

Query: 608 ----------------GSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSI 651
                            + +  +  L  + NQ++   P  I    +  L+L+ N L    
Sbjct: 177 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLNGNQLKD-- 233

Query: 652 PGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKG 703
            G+ ++L  +  LDL++N++S   P  L+ L  L+   +  N +S + P  G
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAG 283

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 43/306 (14%), Positives = 84/306 (27%), Gaps = 51/306 (16%)

Query: 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
            L++L  +    N L+   P+        I ++         + +  + +    F     
Sbjct: 64  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123

Query: 505 NYLEGQIP----------NQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHE 554
           +    +            N +  +  L  L        G+  + L  +            
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 555 PYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYM 614
                  ++             +          I   L ++        ++   +++  +
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 243

Query: 615 VGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIP--------------------GS 654
             LDL+ NQ++   P   G  ++  L L  N +S   P                      
Sbjct: 244 TDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 302

Query: 655 FSNLKWIESLDLSHNRLSGQVP----PRLTELNFLSN----------------FNVSFNN 694
            SNLK +  L L  N +S   P     +L  L F +N                 +   N 
Sbjct: 303 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQ 362

Query: 695 LSGLIP 700
           +S L P
Sbjct: 363 ISDLTP 368

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.6 bits (184), Expect = 2e-15
 Identities = 73/284 (25%), Positives = 106/284 (37%), Gaps = 24/284 (8%)

Query: 442 SSFNLSSLEHLYLQMNSLSG--PIPIALFRSSNLITLDLRDN-RFSGVIPHQISESLTLR 498
           +      + +L L   +L    PIP +L     L  L +       G IP  I++   L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 499 FLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQ 558
           +L +    + G IP+ L Q++ L  LD S+N +SG++P  ++ +                
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL-----VGITFDGN 159

Query: 559 FFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLD 618
             S     S G++           N +    P       +                   D
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV----------------D 203

Query: 619 LSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPR 678
           LS N L G      G  +                G     K +  LDL +NR+ G +P  
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 679 LTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGP 722
           LT+L FL + NVSFNNL G IP  G    FD S+Y  N  LCG 
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.2 bits (170), Expect = 2e-13
 Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 7/265 (2%)

Query: 101 DCLKNLSHLKVLDISYNQLSG--TLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKL 158
           D       +  LD+S   L     +PS++  L  L +L +   N     +  ++A  ++L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 159 EVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVG 218
             L ++      ++          + +    N     +P  +    +L  +   GN + G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 219 DFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQ 278
             P      +    ++ ++ N  TG +       +        N                
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 279 KLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNN 338
           + +++  +   F+      +G  K L  L L  N   G LP   LT    L  L++S NN
Sbjct: 224 QKIHLAKNSLAFDLG---KVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNN 279

Query: 339 FYGQIFPKYMNLTQLEFLYLENNKF 363
             G+I P+  NL + +     NNK 
Sbjct: 280 LCGEI-PQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.5 bits (163), Expect = 1e-12
 Identities = 62/257 (24%), Positives = 89/257 (34%), Gaps = 3/257 (1%)

Query: 284 DMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL-LTGCISLGLLDLSGN-NFYG 341
           D  +  + G L  +  +   +  L L   N     P P  L     L  L + G  N  G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 342 QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSD 401
            I P    LTQL +LY+ +   SG I + LS    L  LD S N LSG +P  I +  + 
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSG 461
           + +         G IP    +   L                    +          ++  
Sbjct: 152 VGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210

Query: 462 PIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRL 521
                LF S                   ++  S  L  L LR N + G +P  L QL+ L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 522 GVLDLSHNRISGSIPSC 538
             L++S N + G IP  
Sbjct: 271 HSLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 52/296 (17%), Positives = 104/296 (35%), Gaps = 33/296 (11%)

Query: 248 PKTKHDFLHHLDVSNNNLTGKLPEDMGII-LQKLLYIDMSDNRFEGYLPSSIGEMKALIF 306
             T+   +++LD+S  NL    P    +  L  L ++ +                   + 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 307 LRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGK 366
                +          L+   +L  LD S N   G + P   +L  L  +  + N+ SG 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 367 IEEGLSNSNEL--NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHG 424
           I +   + ++L  +     N L            + +L  + +S+  L+G+      +  
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRL---TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 425 SLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFS 484
           +   + +++N L+  +       +L  L L+ N + G +P  L +   L +L++  N   
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 485 GVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRI--SGSIPSC 538
           G IP                         Q   L+R  V   ++N+      +P+C
Sbjct: 282 GEIP-------------------------QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.7 bits (148), Expect = 9e-11
 Identities = 58/259 (22%), Positives = 87/259 (33%), Gaps = 6/259 (2%)

Query: 209 LDLSGNNLVGDFPT-WVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTG 267
           LDLSG NL   +P    L N   L  L++   +       P        H     +    
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 268 KLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCI 327
               D    ++ L+ +D S N   G LP SI  +  L+ +    N  SG +P    +   
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 328 SLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLL 387
               + +S N   G+I P + NL         N           S+ N        N+  
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-- 232

Query: 388 SGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLS 447
                      S +L  L +    + G +P  L     L+ L+VS N L G +    NL 
Sbjct: 233 -LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 448 SLEHLYLQMNSL--SGPIP 464
             +      N      P+P
Sbjct: 292 RFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 53/269 (19%), Positives = 99/269 (36%), Gaps = 7/269 (2%)

Query: 55  TKLKNLEALDLSYNNISGSSE-SQGVCELKNLSEFILRG-INIKGHLPDCLKNLSHLKVL 112
           T+   +  LDLS  N+         +  L  L+   + G  N+ G +P  +  L+ L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 113 DISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSV 172
            I++  +SG +P  ++ + +L  L    N   GT    S+++   L  +         ++
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PPSISSLPNLVGITFDGNRISGAI 165

Query: 173 KTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLE 232
                  +     + +    L           +L  +DLS N L GD       +    +
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 233 ALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEG 292
                N+      ++  +K+     L   NN + G LP+ +   L+ L  +++S N   G
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDL--RNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCG 282

Query: 293 YLPSSIGEMKALIFLRLPKNNFSGELPAP 321
            +P   G ++         N      P P
Sbjct: 283 EIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.2 bits (100), Expect = 7e-05
 Identities = 55/276 (19%), Positives = 96/276 (34%), Gaps = 31/276 (11%)

Query: 17  LFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSY--NNISGSS 74
           L        + I    ANL  L  L + G           +  L  L   Y  +     +
Sbjct: 57  LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116

Query: 75  ESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLE 134
               + ++K L         + G LP  + +L +L  +    N++SG +P +  + + L 
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

Query: 135 YLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK 194
               +  N     +  + AN +   V    SR  +    +  F      + + L   +L 
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFV--DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 195 VIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF 254
                +    +L  LDL  N + G  P  +                    L+       F
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGL------------------TQLK-------F 269

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRF 290
           LH L+VS NNL G++P+  G  LQ+      ++N+ 
Sbjct: 270 LHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 7e-14
 Identities = 48/280 (17%), Positives = 91/280 (32%), Gaps = 15/280 (5%)

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF 314
              LD+ NN +T     D    L+ L  + + +N+     P +   +  L  L L KN  
Sbjct: 33  TALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 315 SGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNS 374
             ELP  +      L + +         +F   +N   +  L     K SG         
Sbjct: 92  K-ELPEKMPKTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 375 NELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSEN 434
            +L+ + I++  ++             L  L +    +     A L    +L  L +S N
Sbjct: 150 KKLSYIRIADTNIT----TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 435 CLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGV------IP 488
            +S     S   +         N+    +P  L     +  + L +N  S +       P
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 489 HQISESLTLRFLLLRGNYLEGQ--IPNQLCQLRRLGVLDL 526
              ++  +   + L  N ++     P+    +     + L
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 9e-13
 Identities = 43/219 (19%), Positives = 75/219 (34%), Gaps = 4/219 (1%)

Query: 328 SLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLL 387
              LLDL  N         + NL  L  L L NNK S       +   +L  L +S N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 388 SGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLS 447
              +P  +     +L+V       ++ ++   L     + L +           +   + 
Sbjct: 92  K-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 448 SLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYL 507
            L ++ +   +++  IP  L    +L  L L  N+ + V    +     L  L L  N +
Sbjct: 151 KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 508 EGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWV 546
                  L     L  L L++N++            + V
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 246

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 2e-12
 Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 3/233 (1%)

Query: 470 SSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN 529
             +   LDL++N+ + +          L  L+L  N +    P     L +L  L LS N
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 530 RISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIF 589
           ++          +         + +     F+ +    +     +        NG +   
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 590 PQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRG-LNLSYNFLS 648
            +L     +               +  L L  N++T    + +  L     L LS+N +S
Sbjct: 150 KKL-SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 649 GSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD 701
               GS +N   +  L L++N+L  +VP  L +  ++    +  NN+S +  +
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 3e-12
 Identities = 46/241 (19%), Positives = 83/241 (34%), Gaps = 6/241 (2%)

Query: 304 LIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKF 363
              L L  N  +  +         +L  L L  N         +  L +LE LYL  N+ 
Sbjct: 33  TALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 364 SGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH 423
               E+      EL   +     +   + + +      +  L  + +   G         
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI--VVELGTNPLKSSGIENGAFQGM 149

Query: 424 GSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRF 483
             L+ + +++  ++          SL  L+L  N ++     +L   +NL  L L  N  
Sbjct: 150 KKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 484 SGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIML 543
           S V    ++ +  LR L L  N L  ++P  L   + + V+ L +N IS    +      
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 544 L 544
            
Sbjct: 267 Y 267

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.3 bits (155), Expect = 1e-11
 Identities = 45/261 (17%), Positives = 83/261 (31%), Gaps = 13/261 (4%)

Query: 83  KNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNN 142
            + +   L+   I        KNL +L  L +  N++S   P A   L  LE L L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 143 FEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLH 202
                L   +    +   +  +  T +             +++   P  +  +       
Sbjct: 91  L--KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 203 QYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSN 262
              L  + ++  N+    P  +  +   L  L L  N  T          + L  L +S 
Sbjct: 149 MKKLSYIRIADTNI-TTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 263 NNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG-----E 317
           N+++             L  + +++N+     P  + + K +  + L  NN S       
Sbjct: 205 NSISAV-DNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 318 LPAPLLTGCISLGLLDLSGNN 338
            P    T   S   + L  N 
Sbjct: 263 CPPGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (126), Expect = 5e-08
 Identities = 44/237 (18%), Positives = 67/237 (28%), Gaps = 29/237 (12%)

Query: 32  FANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQ------------ 77
           F NL NL  L L    I+ +       L  LE L LS N +    E              
Sbjct: 51  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 110

Query: 78  ----------GVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAI 127
                            + E     +   G      + +  L  + I+   ++       
Sbjct: 111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 170

Query: 128 TTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLG 187
            +LT L     LD N        SL   + L  L LS  +               L+ L 
Sbjct: 171 PSLTELH----LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH-LRELH 225

Query: 188 LPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGN 244
           L N  L  +P  L     ++++ L  NN+               +    +  S   N
Sbjct: 226 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 43/257 (16%), Positives = 77/257 (29%), Gaps = 12/257 (4%)

Query: 425 SLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRF 483
              LL +  N ++      F NL +L  L L  N +S   P A      L  L L  N+ 
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 484 SGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIML 543
             +          LR      N +     +    L ++ V++L  N +  S         
Sbjct: 92  KELPEKMPKTLQELRVH---ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 544 LWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRY 603
           +     + + +  +         S+   +                   L K+     +  
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 604 ELYNGSNI--KYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSG------SIPGSF 655
            + NGS     ++  L L+ N+L            I+ + L  N +S         PG  
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 656 SNLKWIESLDLSHNRLS 672
           +       + L  N + 
Sbjct: 269 TKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 1/104 (0%)

Query: 628 IPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSN 687
           +P ++       L+L  N ++    G F NLK + +L L +N++S   P     L  L  
Sbjct: 25  VPKDLPP-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 83

Query: 688 FNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNST 731
             +S N L  L     +              +     N      
Sbjct: 84  LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 7e-12
 Identities = 48/273 (17%), Positives = 83/273 (30%), Gaps = 33/273 (12%)

Query: 190 NYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPK 249
              L+ +P  +      + + L GN +    P    R    L  L+L +N          
Sbjct: 20  QQGLQAVPVGIPA--ASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 250 TKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRL 309
           T    L  LD+S+N     +       L +L  + +     +   P     + AL +L L
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 310 PKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEE 369
             N     LP        +L  L L GN         +  L  L+ L L  N+ +     
Sbjct: 137 QDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 370 GL------------------------SNSNELNELDISNNLLSGHIPHWIGNFSSDLKVL 405
                                     +    L  L +++N              + L+  
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKF 253

Query: 406 LMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSG 438
             S   +  ++P +L      +L  ++ N L G
Sbjct: 254 RGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 7e-10
 Identities = 44/302 (14%), Positives = 80/302 (26%), Gaps = 51/302 (16%)

Query: 374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSE 433
                 + +  N +S           + L +L +    L     A       L  L +S+
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRN-LTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 434 NCLSGPMTSSF--NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQI 491
           N     +  +    L  L  L+L    L    P      + L  L L+DN    +     
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 492 SESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVY 551
            +   L  L L GN +          L  L  L L  NR++   P     +         
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL------ 203

Query: 552 LHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNI 611
                                        + N + ++                    + +
Sbjct: 204 ------------------------MTLYLFANNLSALPT---------------EALAPL 224

Query: 612 KYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRL 671
           + +  L L+ N       +      ++    S + +  S+P   +         L+ N L
Sbjct: 225 RALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDL 281

Query: 672 SG 673
            G
Sbjct: 282 QG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 45/259 (17%), Positives = 82/259 (31%), Gaps = 9/259 (3%)

Query: 36  TNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
              + + L G  I+ +        +NL  L L  N ++    +            +    
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
            ++   P     L  L  L +    L    P     L +L+YL L DN  +     ++  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSG 213
           +   L  L L     + SV    F     L  L L    +  +           +     
Sbjct: 151 DLGNLTHLFL-HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 214 NNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDM 273
            N +   PT  L     L+ L L +N +  + +  +    +L     S++ +   LP+  
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR- 267

Query: 274 GIILQKLLYIDMSDNRFEG 292
              L       ++ N  +G
Sbjct: 268 ---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 1/206 (0%)

Query: 332 LDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI 391
           + L GN         +     L  L+L +N  +       +    L +LD+S+N     +
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 392 PHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLE 450
                +    L  L + +  L+   P       +L  L + +N L      +F +L +L 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 451 HLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQ 510
           HL+L  N +S     A     +L  L L  NR + V PH   +   L  L L  N L   
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 511 IPNQLCQLRRLGVLDLSHNRISGSIP 536
               L  LR L  L L+ N       
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCR 242

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 50/260 (19%), Positives = 85/260 (32%), Gaps = 9/260 (3%)

Query: 107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
           +  + + +  N++S    ++     +L  L L  N         +    + LE L LS  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 167 TNMLSVKTENFLPTFQLKVLGLPNYNLKVI-PSFLLHQYDLKLLDLSGNNLVGDFPTWVL 225
             + SV    F    +L  L L    L+ + P        L+ L L  N L    P    
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTF 149

Query: 226 RNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDM 285
           R+   L  LFL  N  +   +        L  L +  N +    P      L +L+ + +
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYL 208

Query: 286 SDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFP 345
             N        ++  ++AL +LRL  N +  +           L     S +     +  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDC--RARPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 346 KYMNLTQLEFLYLENNKFSG 365
               L   +   L  N   G
Sbjct: 267 ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 38/256 (14%), Positives = 77/256 (30%), Gaps = 9/256 (3%)

Query: 447 SSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNY 506
           ++ + ++L  N +S     +     NL  L L  N  + +     +    L  L L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 507 LEGQI-PNQLCQLRRLGVLDLSHNRI----SGSIPSCLTIMLLWVAGNVYLHEPYLQFFS 561
               + P     L RL  L L    +     G       +  L++  N     P   F  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 562 AIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSC 621
              +  +  + N                 +L+  +    + +        + M     + 
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 622 NQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTE 681
           N       +      ++ L L+ N        +     W++    S + +   +P RL  
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 682 LNFLSNFNVSFNNLSG 697
            +      ++ N+L G
Sbjct: 271 RDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 44/245 (17%), Positives = 73/245 (29%), Gaps = 8/245 (3%)

Query: 463 IPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLG 522
           +P+ +   +    + L  NR S V          L  L L  N L          L  L 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 523 VLDLSHNRISGSIPSCLTIML--LWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGH 580
            LDLS N    S+       L  L            L       + ++   Y        
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 581 YGNGVYSIFPQLVKVEFMTKNRYELYNGS--NIKYMVGLDLSCNQLTGGIPSEIGDLQIR 638
             +  +     L  +         +   +   +  +  L L  N++    P    DL   
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 639 -GLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSG 697
             L L  N LS     + + L+ ++ L L+ N        R     +L  F  S + +  
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPC 262

Query: 698 LIPDK 702
            +P +
Sbjct: 263 SLPQR 267

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (157), Expect = 1e-11
 Identities = 45/449 (10%), Positives = 112/449 (24%), Gaps = 17/449 (3%)

Query: 59  NLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKG----HLPDCLKNLSHLKVLDI 114
           ++++LD+    +S +  ++ +  L+      L    +       +   L+    L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 115 SYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKT 174
             N+L       +          +   + +   L  +        +  L +   +     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 175 ENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEAL 234
                  QL   GL +   ++    L +            +++   P +     +  +  
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 235 FLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYL 294
                     L+    + + L        +   +    +      L  + +  N+     
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 295 PSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLE 354
            + +         RL               G +   L              +  +     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 355 FLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG 414
                           + + +            S  +          +    +    ++ 
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHF---SSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSF-----NLSSLEHLYLQMNSLSGPIPIALFR 469
                      L +L +++  +S    SS         SL  L L  N L     + L  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 470 S-----SNLITLDLRDNRFSGVIPHQISE 493
           S       L  L L D  +S  +  ++  
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (137), Expect = 3e-09
 Identities = 56/446 (12%), Positives = 110/446 (24%), Gaps = 18/446 (4%)

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEG----YLPSSIGEMKALIFLRLP 310
           +  LD+    L+     ++  +LQ+   + + D          + S++    AL  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 311 KNNFSGE----LPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGK 366
            N         +   L T    +  L L      G       +  +      E +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 367 IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSL 426
           + +          LD    L    + +   + +S   +  + +            N  + 
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 427 NLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGV 486
             + V    L         L          N       +A   S   + L        G+
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 487 IPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWV 546
                        L     +  G        L R+     S   +S +           +
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 547 AGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELY 606
              +      L+              +           +  +     ++E          
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 607 NGSNIKYMVGLDLSCNQLTGGIPSEIGDL-----QIRGLNLSYNFLSGSIPGSFS----- 656
            G     +  L L+   ++    S +         +R L+LS N L  +           
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 657 NLKWIESLDLSHNRLSGQVPPRLTEL 682
               +E L L     S ++  RL  L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 7e-06
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 26/105 (24%)

Query: 32  FANLTNLKILDLSGCGITT------LQGLTKLKNLEALDLSYNNISGSSESQGVCELKNL 85
               + L++L L+ C ++          L    +L  LDLS N +  +        +  L
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG-------ILQL 417

Query: 86  SEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTL 130
            E +              +    L+ L +     S  +   +  L
Sbjct: 418 VESV-------------RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 8e-06
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 617 LDLSCNQLTGGIPSEIGDL--QIRGLNLSYNFLSG----SIPGSFSNLKWIESLDLSHNR 670
           LD+ C +L+    +E+  L  Q + + L    L+      I  +      +  L+L  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 671 LSGQVPPRLTELNFLSNFNVSFNNLSG 697
           L       + +     +  +   +L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-05
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 433 ENCLSGPMTSSFNLSSLEHLYLQMNSLSG----PIPIALFRSSNLITLDLRDNRFSGVIP 488
                         S L  L+L    +S      +   L  + +L  LDL +N       
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 489 HQISESL-----TLRFLLLRGNYLEGQIPNQLCQLRR 520
            Q+ ES+      L  L+L   Y   ++ ++L  L +
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 6e-05
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 470 SSNLITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNYLEGQ----IPNQLCQLRRLGVL 524
           S ++ +LD++    S     ++   L   + + L    L       I + L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 525 DLSHNRISGSIPSCLTIML 543
           +L  N +      C+   L
Sbjct: 61  NLRSNELGDVGVHCVLQGL 79

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 26/186 (13%), Positives = 48/186 (25%), Gaps = 10/186 (5%)

Query: 448 SLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESL----TLRFLLL 502
            ++ L +Q   LS      L         + L D   +      IS +L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 503 RGNYLEGQIPNQLCQL-----RRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYL 557
           R N L     + + Q       ++  L L +  ++G+    L+  L  +     LH    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 558 QFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGL 617
               A          +             S+     +           +    +      
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 618 DLSCNQ 623
           +     
Sbjct: 183 EAGVRV 188

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 4e-04
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 98  HLPDCLKNLSHLKVLDISYNQLSGT----LPSAITTLTSLEYLALLDNNFEG---TFLLN 150
                 +  S L+VL ++   +S +    L + +    SL  L L +N         L+ 
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 151 SLA-NHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVI 196
           S+      LE L+L       S + E+ L   +         +L+VI
Sbjct: 420 SVRQPGCLLEQLVLYD--IYWSEEMEDRLQALEKD-----KPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 8/101 (7%)

Query: 425 SLNL--LSVSENCLS--GPMTSSFNLSSLEHLYLQMNSLSG----PIPIALFRSSNLITL 476
           SL++  L +    LS          L   + + L    L+      I  AL  +  L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 477 DLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQ 517
           +LR N    V  H + + L      ++   L+         
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 8e-04
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 32 FANLTNLKILDLSGCGITT------LQGLTKLKNLEALDLSYNNISGSS 74
             L   +++ L  CG+T          L     L  L+L  N +    
Sbjct: 23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG 71

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 327 ISLGLLDLSGNNFYGQIFPKYM-NLTQLEFLYLENNKFSGK----IEEGLSNSNELNELD 381
           + +  LD+         + + +  L Q + + L++   +      I   L  +  L EL+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 382 ISNNLLSG----HIPHWIGNFSSDLKVLLMSKMF 411
           + +N L       +   +   S  ++ L +    
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 8/105 (7%)

Query: 282 YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL---LTGCISLGLLDLSGNN 338
              + D                L  L L   + S    + L   L    SL  LDLS N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 339 FYGQIFPK-----YMNLTQLEFLYLENNKFSGKIEEGLSNSNELN 378
                  +           LE L L +  +S ++E+ L    +  
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 23/112 (20%), Positives = 32/112 (28%), Gaps = 29/112 (25%)

Query: 58  KNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYN 117
             L  L L+  ++S SS S                      L   L     L+ LD+S N
Sbjct: 369 SVLRVLWLADCDVSDSSCS---------------------SLAATLLANHSLRELDLSNN 407

Query: 118 QLSGTLPSAITT-----LTSLEYLALLDNNFEGTF---LLNSLANHSKLEVL 161
            L       +          LE L L D  +       L     +   L V+
Sbjct: 408 CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 45/405 (11%), Positives = 94/405 (23%), Gaps = 14/405 (3%)

Query: 307 LRLPKNNFSGELPAPLLTGCISLGLLDLSGNNF----YGQIFPKYMNLTQLEFLYLENNK 362
           L +     S    A LL       ++ L            I         L  L L +N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 363 FSGKIEEGLSNSNELNELDISNNLLSGHIP--HWIGNFSSDLKVLLMSKMFLKGNIPAQL 420
                   +    +     I    L          G  SS L+ L   +     +     
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126

Query: 421 LNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRD 480
                L    +   C    +   +   S        + L           SN    +   
Sbjct: 127 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 186

Query: 481 NRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDL-SHNRISGSIPSCL 539
                 +     +   L+           +    +   +          N++     + L
Sbjct: 187 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 246

Query: 540 TIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMT 599
              LL  +  +     +    +A   G +     +             +  +  ++   T
Sbjct: 247 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 306

Query: 600 KNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSI---PGSFS 656
                    S          +C      + ++   L    ++ +    +G      G   
Sbjct: 307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 366

Query: 657 NLKWIESLDLSHNRLSGQ----VPPRLTELNFLSNFNVSFNNLSG 697
               +  L L+   +S      +   L   + L   ++S N L  
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 12/91 (13%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 197 PSFLLHQYDLKLLDLSGNNLVGDFPTWV---LRNNTKLEALFLTNNSFTGN-----LQLP 248
                    L++L L+  ++     + +   L  N  L  L L+NN          ++  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 249 KTKHDFLHHLDVSNNNLTGKLPEDMGIILQK 279
           +     L  L + +   + ++ + +  + + 
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKD 452

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 57/439 (12%), Positives = 103/439 (23%), Gaps = 33/439 (7%)

Query: 109 LKVLDISYNQLSGT-LPSAITTLTSLEYLALLDNNFEG---TFLLNSLANHSKLEVLLLS 164
           ++ LDI   +LS       +  L   + + L D          + ++L  +  L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 165 SRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWV 224
           S  N L     + +        GL   + K           ++ L L    L G     +
Sbjct: 64  S--NELGDVGVHCVLQ------GLQTPSCK-----------IQKLSLQNCCLTGAGCGVL 104

Query: 225 LRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYID 284
                 L  L   + S                                +     + L   
Sbjct: 105 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 164

Query: 285 MSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIF 344
           +        L  S  ++       L +           L         D   +       
Sbjct: 165 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 224

Query: 345 PKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKV 404
              +    L    L +   +      L  S+ L  L I    ++      +       + 
Sbjct: 225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 284

Query: 405 LLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIP 464
           L    +                    +   C    +       +        + L+    
Sbjct: 285 LKELSLAGNELGDEGARLLCETL---LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 341

Query: 465 IALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQ----IPNQLCQLRR 520
           +   + SN    D         +    S    LR L L    +       +   L     
Sbjct: 342 LLELQISNNRLEDAGVRELCQGLGQPGS---VLRVLWLADCDVSDSSCSSLAATLLANHS 398

Query: 521 LGVLDLSHNRISGSIPSCL 539
           L  LDLS+N +  +    L
Sbjct: 399 LRELDLSNNCLGDAGILQL 417

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 58.4 bits (139), Expect = 1e-09
 Identities = 49/328 (14%), Positives = 81/328 (24%), Gaps = 14/328 (4%)

Query: 183 LKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWV---LRNNTKLEALFLTNN 239
           LK+  +   + K + + LL    +K + LSGN +  +   W+   + +   LE    ++ 
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 240 SFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIG 299
                          L    +    L      D          +    ++        + 
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129

Query: 300 EMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLE 359
                            EL               + G N       K    T      L 
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189

Query: 360 NNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQ 419
             K            + L E       L                 L ++           
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249

Query: 420 LLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRS-----SNLI 474
           L +     LLS           S      L+ L LQ N +       L         +L+
Sbjct: 250 LND----CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 475 TLDLRDNRFS--GVIPHQISESLTLRFL 500
            L+L  NRFS    +  +I E  + R  
Sbjct: 306 FLELNGNRFSEEDDVVDEIREVFSTRGR 333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 49/318 (15%), Positives = 81/318 (25%), Gaps = 35/318 (11%)

Query: 99  LPDCLKNLSHLKVLDISYNQLSG----TLPSAITTLTSLEYLALLDNNFE--GTFLLNSL 152
           +   L     +K + +S N +       L   I +   LE     D         +  +L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 153 ANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLS 212
               +  +      T  LS           L      +  L+ +              ++
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 213 GNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPED 272
                                +   N    G+++           L        G  PE 
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 273 MGIILQKLL-----------YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAP 321
           +  +L + L             +   +     L  ++     L  L L     S    A 
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262

Query: 322 LLTGC-----ISLGLLDLSGNNFYGQIFPK-----YMNLTQLEFLYLENNKFS------G 365
           ++        I L  L L  N                 +  L FL L  N+FS       
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 322

Query: 366 KIEEGLSNS--NELNELD 381
           +I E  S     EL+ELD
Sbjct: 323 EIREVFSTRGRGELDELD 340

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 39  KILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGH 98
           ++L L+   +T L  L +L  +  LDLS+N +     +  +  L+ L         ++  
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENV 58

Query: 99  LPDCLKNLSHLKVLDISYNQLSGT-LPSAITTLTSLEYLALLDNNFEG 145
                     L+ L +  N+L  +     + +   L  L L  N+   
Sbjct: 59  DGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 429 LSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIP 488
           L ++   L+        L  + HL L  N L    P AL     L  L   DN    V  
Sbjct: 3   LHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG 60

Query: 489 HQISESLTLRFLLLRGNYLEG-QIPNQLCQLRRLGVLDLSHNRISG 533
                   L+ LLL  N L+       L    RL +L+L  N +  
Sbjct: 61  VANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 8/123 (6%)

Query: 184 KVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTG 243
           +VL L + +L V+   L     +  LDLS N L    P         L  L +   S   
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL-----AALRCLEVLQASDNA 54

Query: 244 NLQLPKTKHDFLH-HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMK 302
              +    +      L + NN L         +   +L+ +++  N            + 
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLA 113

Query: 303 ALI 305
            ++
Sbjct: 114 EML 116

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 41/279 (14%), Positives = 87/279 (31%), Gaps = 13/279 (4%)

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGK 268
           LDL+G NL  D    +L           +             +   + H+D+SN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR---VQHMDLSNSVIEVS 61

Query: 269 LPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL------ 322
               +     KL  + +   R    + +++ +   L+ L L   +   E           
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 323 -LTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELD 381
            L         D +  +    +      +TQL       N     +   +     L  LD
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 382 ISNNLLSGHIPHWIGNFSSDLKVLLMSKM-FLKGNIPAQLLNHGSLNLLSVSENCLSGPM 440
           +S++++  +         + L+ L +S+   +      +L    +L  L V      G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 441 TSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLR 479
                  +L HL +  +  +      +    N     ++
Sbjct: 242 QLL--KEALPHLQINCSHFTTIARPTIGNKKNQEIWGIK 278

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 31/296 (10%), Positives = 79/296 (26%), Gaps = 41/296 (13%)

Query: 407 MSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIA 466
           ++   L  ++  +LL+ G +       + +  P+   F+   ++H+ L  + +       
Sbjct: 7   LTGKNLHPDVTGRLLSQGVIAF-RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 65

Query: 467 LFRS-SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLD 525
           +    S L  L L   R S  I + ++                     +   L RL +  
Sbjct: 66  ILSQCSKLQNLSLEGLRLSDPIVNTLA---------------------KNSNLVRLNLSG 104

Query: 526 LSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGV 585
            S            +   L      +  +               T  +      H    +
Sbjct: 105 CSGFSEFALQTLLSSCSRLDELNLSWCFDF--------------TEKHVQVAVAHVSETI 150

Query: 586 YSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSY- 644
             +     +      +   L         + L  S                ++ L+LS  
Sbjct: 151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 210

Query: 645 NFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIP 700
             +          +  +++L +      G +         L +  ++ ++ + +  
Sbjct: 211 YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ---LLKEALPHLQINCSHFTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 9e-07
 Identities = 37/240 (15%), Positives = 74/240 (30%), Gaps = 12/240 (5%)

Query: 37  NLKILDLSGCGITT-LQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINI 95
            +         +   L        ++ +DLS + I  S+    + +   L    L G+ +
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83

Query: 96  KGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITT-----LTSLEYLALLDNNFEGTFLLN 150
              + + L   S+L  L++S                   L  L      D   +   +  
Sbjct: 84  SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 143

Query: 151 SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKV---IPSFLLHQYDLK 207
           +  + +  ++ L   R N+        +      V    + ++ +             L+
Sbjct: 144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203

Query: 208 LLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTG 267
            L LS    +       L     L+ L +      G LQL K     L HL ++ ++ T 
Sbjct: 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA---LPHLQINCSHFTT 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 617 LDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVP 676
           LDL+   L   +   +    +       +F+   +   FS  + ++ +DLS++ +     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTL 63

Query: 677 PR-LTELNFLSNFNVSFNNLSGLIP 700
              L++ + L N ++    LS  I 
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIV 88

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 8e-05
 Identities = 40/264 (15%), Positives = 89/264 (33%), Gaps = 18/264 (6%)

Query: 63  LDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG- 121
           LDL+  N+      + +   + +  F      +   L +       ++ +D+S + +   
Sbjct: 5   LDLTGKNLHPDVTGRLL--SQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 122 TLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTEN----- 176
           TL   ++  + L+ L+L         ++N+LA +S L  L LS  +       +      
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 177 ---FLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEA 233
                            +    +         L L     N    D  T V R    +  
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 234 LFLTNNSFTGNLQLPKTKHDFLHHLDVSN-NNLTGKLPEDMGIILQKLLYIDMSDNRFEG 292
               +     +      + ++L HL +S   ++  +   ++G  +  L  + +     +G
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGIVPDG 239

Query: 293 YLPSSIGEMKALIFLRLPKNNFSG 316
            L       +AL  L++  ++F+ 
Sbjct: 240 TLQLLK---EALPHLQINCSHFTT 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 30/243 (12%), Positives = 73/243 (30%), Gaps = 10/243 (4%)

Query: 163 LSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPT 222
           L+ +   L       L +  +     P   +    +     + ++ +DLS + +      
Sbjct: 7   LTGKN--LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64

Query: 223 WVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDV-SNNNLTGKLPEDMGIILQKLL 281
            +L   +KL+ L L     +  +     K+  L  L++   +  +    + +     +L 
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124

Query: 282 YIDM------SDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLS 335
            +++      ++   +  +      +  L      KN    +L   +      + L    
Sbjct: 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 184

Query: 336 GNNFYGQIFPKYMNLTQLEFLYLEN-NKFSGKIEEGLSNSNELNELDISNNLLSGHIPHW 394
                   F ++  L  L+ L L        +    L     L  L +   +  G +   
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 244

Query: 395 IGN 397
              
Sbjct: 245 KEA 247

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 4e-07
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 32  FANLTNLKILDLSGCGITTLQGL-TKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
           + N    + LDL G  I  ++ L   L   +A+D S N I       G   L+ L   ++
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLV 70

Query: 91  RGINIKGHLPDCLKNLSHLKVLDISYNQLS 120
               I        + L  L  L ++ N L 
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLV 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 51/336 (15%), Positives = 96/336 (28%), Gaps = 24/336 (7%)

Query: 351 TQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM 410
            Q   L L N   S  + E   +   L  L  S N L+  +P    +         +  +
Sbjct: 38  RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQS---------LKSL 83

Query: 411 FLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRS 470
            +  N    L +   L       N     +    N S L+ + +  NSL     +     
Sbjct: 84  LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 471 SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNR 530
                 +  +          ++        L +   L   + + +     L  L    N 
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 531 ISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFP 590
              +       +L  +       E      + +          +            S  P
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 591 QLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGS 650
             +     + N            +  L++S N+L   +P+    L+   L  S+N L+  
Sbjct: 264 PNLYYLNASSNEIR-SLCDLPPSLEELNVSNNKLIE-LPALPPRLER--LIASFNHLA-E 318

Query: 651 IPGSFSNLKWIESLDLSHNRLSG--QVPPRLTELNF 684
           +P    NLK    L + +N L     +P  + +L  
Sbjct: 319 VPELPQNLK---QLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 6e-06
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 32/102 (31%)

Query: 32  FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILR 91
                +L+ L++S   +  L  L     LE L  S+N+++                    
Sbjct: 280 CDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLA-------------------- 317

Query: 92  GINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSL 133
                  +P+  +NL   K L + YN L    P    ++  L
Sbjct: 318 ------EVPELPQNL---KQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 8e-05
 Identities = 55/332 (16%), Positives = 89/332 (26%), Gaps = 29/332 (8%)

Query: 80  CELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALL 139
           C  +   E  L  + +   LP+      HL+ L  S N L+  LP    +L SL      
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 140 DNNFEGTFLLNSLANHS-----------KLEVLLLSSRTNMLSVKTENFLPTFQLKVLGL 188
                    L      S               L +    N    K  +  P+ +    G 
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 189 PNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLP 248
                      L     +   + S   L     +             L        L   
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 249 KTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLR 308
              ++ L  L     +L      D  +     L   ++       + S + E+   ++  
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY-- 267

Query: 309 LPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIE 368
               N S      L     SL  L++S N       P      +LE L    N  + ++ 
Sbjct: 268 --YLNASSNEIRSLCDLPPSLEELNVSNNKL--IELPA--LPPRLERLIASFNHLA-EVP 320

Query: 369 EGLSNSNELNELDISNNLLSGHIPHWIGNFSS 400
           E   N   L +L +  N L    P    +   
Sbjct: 321 ELPQN---LKQLHVEYNPLRE-FPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 8e-05
 Identities = 47/331 (14%), Positives = 103/331 (31%), Gaps = 21/331 (6%)

Query: 36  TNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINI 95
                L+L+  G+++L  L    +LE+L  S N+++   E     +   +    L+ ++ 
Sbjct: 38  RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 96  KGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANH 155
              L + L   ++           S      +   +  +   L  +        N L   
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 156 SKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPN------YNLKVIPSFLLHQYDLKLL 209
            +L+ L   +     +   +            +                FL   Y    L
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 210 DLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKL 269
             +  +L        +R+N   +   L  +    ++             ++   N +   
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 270 PEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISL 329
              +  +   L  +++S+N+    LP+       L  L    N+ + E+P  L     +L
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP-ELPQ---NL 326

Query: 330 GLLDLSGNNFYGQIFPKYMNLTQLEFLYLEN 360
             L +  N    + FP       +E L + +
Sbjct: 327 KQLHVEYNPL--REFPDI--PESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 49/342 (14%), Positives = 90/342 (26%), Gaps = 33/342 (9%)

Query: 182 QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSF 241
           Q   L L N  L  +P    H   L+ L  S N+L            T+L  L       
Sbjct: 39  QAHELELNNLGLSSLPELPPH---LESLVASCNSL------------TELPELP------ 77

Query: 242 TGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEM 301
             +L+     ++ L  L      L      +  +     L         +    S     
Sbjct: 78  -QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP 136

Query: 302 KALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENN 361
                L       +     P L     L  +    N+            + +    +   
Sbjct: 137 DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE 196

Query: 362 KFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL 421
               +    L+     N L  +   L   +       +    +  + +     ++   + 
Sbjct: 197 LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF 256

Query: 422 NHGSLNLLSVSENCLSG--PMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLR 479
           +  S    ++     S     +      SLE L +  N L   +P        L  L   
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALP---PRLERLIAS 312

Query: 480 DNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRL 521
            N  +  +P        L+ L +  N L  + P+    +  L
Sbjct: 313 FNHLAE-VPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 30/228 (13%), Positives = 60/228 (26%), Gaps = 29/228 (12%)

Query: 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
            ++S   +     +L+  +P  L +  +   L L +N                       
Sbjct: 8   KVASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTF------------------ 46

Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIF 564
                     L    RL  L+L    ++         +L  +  +    +        + 
Sbjct: 47  ------SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP 100

Query: 565 VGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQL 624
             ++     +       G        Q + ++            +    +  L L+ N L
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

Query: 625 TGGIPSEIGDL-QIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRL 671
           T      +  L  +  L L  N L  +IP  F     +    L  N  
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 38/205 (18%), Positives = 64/205 (31%), Gaps = 9/205 (4%)

Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF 314
              ++    NLT  LP D+      L    +S+N    +  +++     L  L L +   
Sbjct: 12  HLEVNCDKRNLT-ALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 315 SGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNS 374
           +       L    +        +N    +      L  L  L +  N+ +      L   
Sbjct: 68  TKLQVDGTLPVLGT----LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 375 NELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSEN 434
            EL EL +  N L    P  +       + L ++   L       L    +L+ L + EN
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKL-EKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 435 CLSGPMTSSFNLSSLEHLYLQMNSL 459
            L       F    L   +L  N  
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 8e-05
 Identities = 40/203 (19%), Positives = 66/203 (32%), Gaps = 13/203 (6%)

Query: 36  TNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
            +  IL LS   + T     L     L  L+L    ++   + Q    L  L    L   
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87

Query: 94  NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
            ++          +   + D+S+N+L+     A+  L  L+ L L  N      L   L 
Sbjct: 88  QLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALRGLGELQELYLKGNEL--KTLPPGLL 144

Query: 154 NHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSG 213
             +     L  +  N+  +          L  L L   +L  IP      + L    L G
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

Query: 214 NNLVGD-----FPTWVLRNNTKL 231
           N  + +     F  W+  N   +
Sbjct: 205 NPWLCNCEILYFRRWLQDNAENV 227

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 36/184 (19%), Positives = 55/184 (29%), Gaps = 7/184 (3%)

Query: 107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
               +L +S N L     + +   T L  L L         +  +L          L   
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG-----TLDLS 85

Query: 167 TNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLR 226
            N L            L VL +    L  +P   L             N +   P  +L 
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 227 NNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMS 286
              KLE L L NN+ T          + L  L +  N+L   +P+        L +  + 
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLH 203

Query: 287 DNRF 290
            N +
Sbjct: 204 GNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 609 SNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSH 668
           S +   + ++     LT  +P ++       L+LS N L      +      +  L+L  
Sbjct: 7   SKVASHLEVNCDKRNLTA-LPPDLPKD-TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 669 NR 670
             
Sbjct: 65  AE 66

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 40/210 (19%), Positives = 70/210 (33%), Gaps = 17/210 (8%)

Query: 29  VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
            V  A+L  +  L   G G+TT++G+  L NL  L+L  N I+  +  + + ++  L   
Sbjct: 34  TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELS 93

Query: 89  ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
                N+             L    I+                 L  L+ L   +     
Sbjct: 94  GNPLKNVSAIAGLQSIKTLDLTSTQITDVT-------------PLAGLSNLQVLYLDLNQ 140

Query: 149 LNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKL 208
           + +++  + L  L   S  N             +L  L   +  +  I        +L  
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL-ASLPNLIE 199

Query: 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTN 238
           + L  N +    P   L N + L  + LTN
Sbjct: 200 VHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 9e-05
 Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 21/238 (8%)

Query: 458 SLSGPIPIA-LFRSSNL---ITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPN 513
           S++ P  I  +F    L   I +    +  +  +    ++   +  L   G  +   I  
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG 58

Query: 514 QLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYN 573
            +  L  L  L+L  N+I+   P      +  +  +    +          + ++     
Sbjct: 59  -VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117

Query: 574 STFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIG 633
                             L   +    +            +    +S       +     
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK--- 174

Query: 634 DLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVP----PRLTELNFLSN 687
              +  L    N +S   P   ++L  +  + L +N++S   P      L  +  L+N
Sbjct: 175 ---LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVT-LTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 34/230 (14%), Positives = 60/230 (26%), Gaps = 19/230 (8%)

Query: 33  ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG 92
             L N   +      +T       L  +  L      +   +  +GV  L NL    L+ 
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELKD 72

Query: 93  INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSL 152
             I    P           L  +  +    +    +  T                 L  L
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT----STQITDVTPLAGL 128

Query: 153 ANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLS 212
           +N   L         ++  +   + L                   + L +   L  L   
Sbjct: 129 SNLQVL-------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 213 GNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSN 262
            N +    P   L +   L  + L NN  +    L  T +  L  + ++N
Sbjct: 182 DNKISDISP---LASLPNLIEVHLKNNQISDVSPLANTSN--LFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 28/205 (13%), Positives = 63/205 (30%), Gaps = 16/205 (7%)

Query: 332 LDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI 391
           +    +N    +     +L  +  L       +    EG+   N L  L++ +N ++   
Sbjct: 24  IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLA 79

Query: 392 PHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEH 451
           P       ++L++       +      Q +    L    +++      +++   L    +
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 452 LYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQI 511
               ++ L+G   +                         ++    L  L    N +    
Sbjct: 140 QITNISPLAGLTNLQYLS----------IGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 512 PNQLCQLRRLGVLDLSHNRISGSIP 536
           P  L  L  L  + L +N+IS   P
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP 212

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 16  WLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLS 66
               +  +     +V  A LT L+ L LS   I+ L+ L  LKNL+ L+L 
Sbjct: 158 LDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 10/44 (22%), Positives = 21/44 (47%)

Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISG 72
           V    L ++  +  +   I ++QG+  L N+  L L+ N ++ 
Sbjct: 39 AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD 82

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 9e-05
 Identities = 32/227 (14%), Positives = 61/227 (26%), Gaps = 16/227 (7%)

Query: 475 TLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS 534
               ++++ +  IP  +  +     L      L             L  +++S N +   
Sbjct: 12  VFLCQESKVT-EIPSDLPRNAI--ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 535 IPSCLTIM-------LLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYS 587
           I + +           +  A N+    P            + +          +      
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 588 IFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFL 647
                ++                    V L L+ N +           Q+  LNLS N  
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 648 SGSIP-GSFSNLKWIESLDLSHNRLSGQVPP----RLTELNFLSNFN 689
              +P   F        LD+S  R+   +P      L +L   S +N
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYN 234

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 25/216 (11%), Positives = 55/216 (25%), Gaps = 10/216 (4%)

Query: 463 IPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLG 522
           IP  L R  N I L     +   +     S    L  + +  N +   I   +       
Sbjct: 23  IPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 523 VLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYG 582
                    +    +      L     + +    ++    +                   
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 583 NGVYSIFPQLVKVE------FMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEI--GD 634
           + +       +  E           +       N   +  L+LS N     +P+++  G 
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 635 LQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNR 670
                L++S   +         NLK + +    + +
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 8/38 (21%), Positives = 13/38 (34%)

Query: 101 DCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLAL 138
           D     S   +LDIS  ++       +  L  L   + 
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISG 72
           V   +L  +  L     GI ++ G+  L NL  ++ S N ++ 
Sbjct: 33 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 76

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 31  GFANLTNLKILDLSGCGITTLQGLTKLKNLEAL 63
             ANLT L+ LD+S   ++ +  L KL NLE+L
Sbjct: 167 PLANLTTLERLDISSNKVSDISVLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 32  FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILR 91
            + L   K L LS   I  +  L+ ++NL  L L  N I        V +          
Sbjct: 44  LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103

Query: 92  GINIKGHLPDCLKNLSHLKVLDISYNQLSGTL-PSAITTLTSLEYLALLDNNFEGTFLLN 150
            I     +        +L+VL +S N+++       +  L  LE L L  N     +  N
Sbjct: 104 QIASLSGIEKL----VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159

Query: 151 SLANHSKLEVL 161
           +  +  ++EV+
Sbjct: 160 NATSEYRIEVV 170

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 20/144 (13%), Positives = 38/144 (26%), Gaps = 7/144 (4%)

Query: 182 QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSF 241
               L             L    +L  L +     +       LR   +L  L +  +  
Sbjct: 9   GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 242 TGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEM 301
                        L  L++S N L   L     +    L  + +S N    +   ++  +
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKT-VQGLSLQELVLSGNPL--HCSCALRWL 124

Query: 302 KALI---FLRLPKNNFSGELPAPL 322
           +         +P+         PL
Sbjct: 125 QRWEEEGLGGVPEQKLQCHGQGPL 148

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.004
 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 4/122 (3%)

Query: 32  FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILR 91
            +   +     L   G+ +   L        L+   +  +  +       +  L    L 
Sbjct: 16  MSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAA--TLRIIEENIPELLSLNLS 73

Query: 92  GINIKGH--LPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
              +     +   ++   +LK+L++S N+L             LE L L  N+   TF  
Sbjct: 74  NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD 133

Query: 150 NS 151
            S
Sbjct: 134 QS 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	790
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.08
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.46
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.89

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=6.3e-33  Score=289.99  Aligned_cols=255  Identities=35%  Similarity=0.558  Sum_probs=215.0

Q ss_pred             CeEEEccCccccc--cchhhhccCCCCCEEecCC-ccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEe
Q 036932          402 LKVLLMSKMFLKG--NIPAQLLNHGSLNLLSVSE-NCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLD  477 (790)
Q Consensus       402 L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~  477 (790)
                      ++.|+++++.+.|  .+|..++++++|++|++++ |.++|.+|..+ ++++|++|+|++|++.+..+..+..+..|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            4444444444444  3566677777777777775 67777777766 778888888888888887788888888899999


Q ss_pred             ccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCC-CEEEccCCcCcccCChhHHHHHHhhcccccCCCcc
Q 036932          478 LRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRL-GVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPY  556 (790)
Q Consensus       478 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L-~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~  556 (790)
                      +++|++.+.+|.++..++.++.+++++|.+.+.+|..+..+.++ +.+++++|+++|..|..+..               
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~---------------  196 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN---------------  196 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG---------------
T ss_pred             cccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccc---------------
Confidence            99999888888899999999999999999998899888888776 88999999999887765432               


Q ss_pred             cccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce
Q 036932          557 LQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ  636 (790)
Q Consensus       557 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~  636 (790)
                                                                            + ....+++++|.+.|.+|..++.+.
T Consensus       197 ------------------------------------------------------l-~~~~l~l~~~~~~~~~~~~~~~~~  221 (313)
T d1ogqa_         197 ------------------------------------------------------L-NLAFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             ------------------------------------------------------C-CCSEEECCSSEEEECCGGGCCTTS
T ss_pred             ------------------------------------------------------c-cccccccccccccccccccccccc
Confidence                                                                  1 344689999999999999988887


Q ss_pred             -ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccC
Q 036932          637 -IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRG  715 (790)
Q Consensus       637 -L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g  715 (790)
                       ++.+++++|.+++.+| .++.+++|+.|||++|+|+|.+|.+|+++++|++|||++|+|+|.||+.+.+..++...+.|
T Consensus       222 ~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN  300 (313)
T ss_dssp             CCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred             ccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCC
Confidence             9999999999998776 58999999999999999999999999999999999999999999999988889999999999


Q ss_pred             CcCCCCCCCCCCC
Q 036932          716 NLHLCGPTINKSC  728 (790)
Q Consensus       716 n~~lcg~~~~~~c  728 (790)
                      |+.+||.|++ .|
T Consensus       301 N~~l~g~plp-~c  312 (313)
T d1ogqa_         301 NKCLCGSPLP-AC  312 (313)
T ss_dssp             SSEEESTTSS-CC
T ss_pred             CccccCCCCC-CC
Confidence            9999999875 56

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=4.2e-31  Score=276.05  Aligned_cols=252  Identities=28%  Similarity=0.444  Sum_probs=210.6

Q ss_pred             CCcEEEcccccCcC--CCchhhhhccCCCeEEEccC-ccccccchhhhccCCCCCEEecCCccccCcccccc-cccccce
Q 036932          376 ELNELDISNNLLSG--HIPHWIGNFSSDLKVLLMSK-MFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEH  451 (790)
Q Consensus       376 ~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~  451 (790)
                      +++.|++++|.+.|  .+|..+++++. |++|++++ |.++|.+|..+.++++|++|++++|.+.+..+..+ .+..|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~-L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcc-ccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            56677777777766  46777777777 77777775 67777788888888888888888888888777766 7888899


Q ss_pred             eeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccc-cEEeccCccccccCCccccCCCCCCEEEccCCc
Q 036932          452 LYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTL-RFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNR  530 (790)
Q Consensus       452 L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~  530 (790)
                      +++++|.+.+.+|..+..++.|+.+++++|++.+.+|..+..+.++ +.+++++|++++..|..+..+..+ .++++++.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            9999998888889999999999999999999999999888888776 789999999999888888877655 79999999


Q ss_pred             CcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcc
Q 036932          531 ISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSN  610 (790)
Q Consensus       531 l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (790)
                      +.|.+|..+.                                                                     .
T Consensus       209 ~~~~~~~~~~---------------------------------------------------------------------~  219 (313)
T d1ogqa_         209 LEGDASVLFG---------------------------------------------------------------------S  219 (313)
T ss_dssp             EEECCGGGCC---------------------------------------------------------------------T
T ss_pred             cccccccccc---------------------------------------------------------------------c
Confidence            8888775432                                                                     2


Q ss_pred             cccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 036932          611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFN  689 (790)
Q Consensus       611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~  689 (790)
                      ++.++.+++++|.+++.+| .++.+. ++.|+|++|+|+|.+|+.|+++++|+.|||++|+|+|.+|+ ++.+++|+.++
T Consensus       220 ~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~  297 (313)
T d1ogqa_         220 DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSA  297 (313)
T ss_dssp             TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGG
T ss_pred             ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHH
Confidence            4678899999999988766 466665 99999999999999999999999999999999999999995 68899999999


Q ss_pred             cccCc-ceec-CC
Q 036932          690 VSFNN-LSGL-IP  700 (790)
Q Consensus       690 ls~N~-l~g~-iP  700 (790)
                      +++|+ +.|. +|
T Consensus       298 l~~N~~l~g~plp  310 (313)
T d1ogqa_         298 YANNKCLCGSPLP  310 (313)
T ss_dssp             TCSSSEEESTTSS
T ss_pred             hCCCccccCCCCC
Confidence            99998 5654 55

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=4.3e-26  Score=245.21  Aligned_cols=341  Identities=24%  Similarity=0.264  Sum_probs=222.6

Q ss_pred             CCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCc
Q 036932          251 KHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLG  330 (790)
Q Consensus       251 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  330 (790)
                      .+.+|++|+++++.++ .++ .+ ..+++|++|++++|++++. | .++++++|++|++++|++. .++.  +..+++|+
T Consensus        42 ~l~~l~~L~l~~~~I~-~l~-gl-~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~-~i~~--l~~l~~L~  113 (384)
T d2omza2          42 DLDQVTTLQADRLGIK-SID-GV-EYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DITP--LANLTNLT  113 (384)
T ss_dssp             HHTTCCEEECCSSCCC-CCT-TG-GGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCC
T ss_pred             HhCCCCEEECCCCCCC-Ccc-cc-ccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccc-cccc--cccccccc
Confidence            4556777777777776 443 23 2467777777777777643 2 2666777777777777766 3332  35666777


Q ss_pred             EEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCc
Q 036932          331 LLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM  410 (790)
Q Consensus       331 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n  410 (790)
                      .++++++.+++..+  ......+.......|.+....+.................     ....+..... ........+
T Consensus       114 ~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~  185 (384)
T d2omza2         114 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTT-LERLDISSN  185 (384)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTT-CCEEECCSS
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccccccccccccccccc-----hhhhhccccc-ccccccccc
Confidence            77777666654332  233455556665555554332222211111111111111     1122222222 333444444


Q ss_pred             cccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchh
Q 036932          411 FLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQ  490 (790)
Q Consensus       411 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~  490 (790)
                      ...  .......+++++.+++++|.+++..+. ...++|++|++++|++++ + ..+..+++|+.+++++|++++..  .
T Consensus       186 ~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~~-~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~  258 (384)
T d2omza2         186 KVS--DISVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--P  258 (384)
T ss_dssp             CCC--CCGGGGGCTTCSEEECCSSCCCCCGGG-GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--G
T ss_pred             ccc--cccccccccccceeeccCCccCCCCcc-cccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--c
Confidence            332  344566777888888888888776542 246678888888888774 2 35677788888888888887643  3


Q ss_pred             hhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccc
Q 036932          491 ISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGT  570 (790)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  570 (790)
                      +..+++|++|++++|++++..+  +..++.++.+++++|++++ ++. +                               
T Consensus       259 ~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~-~~~-~-------------------------------  303 (384)
T d2omza2         259 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISP-I-------------------------------  303 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-CGG-G-------------------------------
T ss_pred             ccccccCCEeeccCcccCCCCc--ccccccccccccccccccc-ccc-c-------------------------------
Confidence            6777888888888888875432  6677788888888887763 111 1                               


Q ss_pred             cccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCcccc
Q 036932          571 YYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSG  649 (790)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g  649 (790)
                                                            ..++.++.|++++|++++. + .+..+. |+.|++++|+|++
T Consensus       304 --------------------------------------~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         304 --------------------------------------SNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             --------------------------------------GGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC
T ss_pred             --------------------------------------chhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC
Confidence                                                  2256789999999999864 3 367776 9999999999985


Q ss_pred             ccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccC
Q 036932          650 SIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFN  693 (790)
Q Consensus       650 ~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N  693 (790)
                       +| .++++++|+.||+++|+|++.+|  +.++++|++|+|++|
T Consensus       344 -l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 -VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence             44 68999999999999999998776  889999999999988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=3.6e-25  Score=237.96  Aligned_cols=302  Identities=27%  Similarity=0.371  Sum_probs=148.3

Q ss_pred             cCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEE
Q 036932           33 ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVL  112 (790)
Q Consensus        33 ~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  112 (790)
                      +.+.+|++|+++++.|+.++++..+++|++|++++|+|++..   .+.++++|++|++++|.+.+..  .++++++|+.|
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~---~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             HHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCc---cccCCccccccccccccccccc--ccccccccccc
Confidence            345667777777777776677777777777777777777543   3667777777777777776432  26677777777


Q ss_pred             EccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCC
Q 036932          113 DISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYN  192 (790)
Q Consensus       113 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~  192 (790)
                      +++++.+++..+  ......+..+....|.+.....   .......+....                       ......
T Consensus       116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~-----------------------~~~~~~  167 (384)
T d2omza2         116 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSF-----------------------GNQVTD  167 (384)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG---GTTCTTCSEEEE-----------------------EESCCC
T ss_pred             cccccccccccc--cccccccccccccccccccccc---cccccccccccc-----------------------ccccch
Confidence            777776664432  3344555666665555442111   111111111110                       000000


Q ss_pred             CCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChh
Q 036932          193 LKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPED  272 (790)
Q Consensus       193 l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  272 (790)
                      .    ..+.............|... . .. ....+++++.+++++|.+++..  +...+++|++|++++|.++ .++ .
T Consensus       168 ~----~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~l~~~~~l~l~~n~i~~~~--~~~~~~~L~~L~l~~n~l~-~~~-~  236 (384)
T d2omza2         168 L----KPLANLTTLERLDISSNKVS-D-IS-VLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLK-DIG-T  236 (384)
T ss_dssp             C----GGGTTCTTCCEEECCSSCCC-C-CG-GGGGCTTCSEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCC-CCG-G
T ss_pred             h----hhhccccccccccccccccc-c-cc-ccccccccceeeccCCccCCCC--cccccCCCCEEECCCCCCC-Ccc-h
Confidence            0    11122222333333333222 1 11 1224455555555555544432  2233444555555555554 232 1


Q ss_pred             HHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCC
Q 036932          273 MGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQ  352 (790)
Q Consensus       273 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  352 (790)
                      + ..+++|+.+++++|.+++..+  ++.+++|++|+++++++. .++.  +..++.++.+++..|.+.+.  ..+..+++
T Consensus       237 l-~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~-~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~  308 (384)
T d2omza2         237 L-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDI--SPISNLKN  308 (384)
T ss_dssp             G-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTT
T ss_pred             h-hcccccchhccccCccCCCCc--ccccccCCEeeccCcccC-CCCc--cccccccccccccccccccc--cccchhcc
Confidence            1 234555555555555553222  444555555555555554 2222  23445555555555555432  22444455


Q ss_pred             CcEEEcCCcccccccccccCCCCCCcEEEcccccCc
Q 036932          353 LEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS  388 (790)
Q Consensus       353 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  388 (790)
                      ++.|++++|++++..  .+..+++|++|++++|+++
T Consensus       309 l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         309 LTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             CSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC
T ss_pred             cCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC
Confidence            555555555554332  1444555555555555544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.4e-23  Score=217.57  Aligned_cols=196  Identities=24%  Similarity=0.247  Sum_probs=93.9

Q ss_pred             ccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEccc
Q 036932          305 IFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISN  384 (790)
Q Consensus       305 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  384 (790)
                      +.++-+++.++ ++|..+.   +++++|++++|+++...+.+|.++++|++|++++|.+....|..|..+++|++|++++
T Consensus        13 ~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          13 RVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            34444444444 4444321   3455555555555544444555555555555555555555455555555566666655


Q ss_pred             ccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccc
Q 036932          385 NLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIP  464 (790)
Q Consensus       385 n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p  464 (790)
                      |+++ .+|..+.  .. ++.|.+..|.+.+..+..+.....+..++...|....                     .+..+
T Consensus        89 n~l~-~l~~~~~--~~-l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~---------------------~~~~~  143 (305)
T d1xkua_          89 NQLK-ELPEKMP--KT-LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---------------------SGIEN  143 (305)
T ss_dssp             SCCS-BCCSSCC--TT-CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG---------------------GGBCT
T ss_pred             CccC-cCccchh--hh-hhhhhccccchhhhhhhhhhccccccccccccccccc---------------------cCCCc
Confidence            5555 2332221  11 4444444444443333333333344444444432211                     11223


Q ss_pred             hhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCc
Q 036932          465 IALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       465 ~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  532 (790)
                      ..+..+++|+.+++++|.++. +|..+  +++|+.|++++|..++..+..+..++.++.|++++|.+.
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~  208 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  208 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccc
Confidence            334444555555555555542 22221  345555556555555555555555666666666666555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=5.2e-23  Score=213.21  Aligned_cols=247  Identities=21%  Similarity=0.232  Sum_probs=128.1

Q ss_pred             CCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEE
Q 036932          253 DFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLL  332 (790)
Q Consensus       253 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L  332 (790)
                      +.+++|++++|+++ .+|...+..+++|++|++++|.+....|..|.++++|++|++++|+++ .+|...   ...++.|
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~---~~~l~~L  105 (305)
T d1xkua_          31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQEL  105 (305)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEE
T ss_pred             CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch---hhhhhhh
Confidence            34555555555555 455444444566666666666666555555666666666666666665 555432   3455666


Q ss_pred             EccCCcCcccccccccCCCCCcEEEcCCcccc--cccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCc
Q 036932          333 DLSGNNFYGQIFPKYMNLTQLEFLYLENNKFS--GKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM  410 (790)
Q Consensus       333 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n  410 (790)
                      ++.+|.+.+..+..+.....+..++...|...  ...+..+..+++|+.+++++|.+. .+|..+  .++ ++.|++++|
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~-L~~L~l~~n  181 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPS-LTELHLDGN  181 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTT-CSEEECTTS
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCc-cCEEECCCC
Confidence            66666666555445555555666666555332  223344555666666666666655 233221  112 444444444


Q ss_pred             cccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchh
Q 036932          411 FLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQ  490 (790)
Q Consensus       411 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~  490 (790)
                      ..++..+..+..++.+++|+++                       +|.+++..+..+.++++|++|+|++|+++ .+|.+
T Consensus       182 ~~~~~~~~~~~~~~~l~~L~~s-----------------------~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~  237 (305)
T d1xkua_         182 KITKVDAASLKGLNNLAKLGLS-----------------------FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG  237 (305)
T ss_dssp             CCCEECTGGGTTCTTCCEEECC-----------------------SSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred             cCCCCChhHhhccccccccccc-----------------------cccccccccccccccccceeeeccccccc-ccccc
Confidence            4444444444444444444444                       44444444444444455555555555554 23444


Q ss_pred             hhcCccccEEeccCccccccCCc------cccCCCCCCEEEccCCcCc
Q 036932          491 ISESLTLRFLLLRGNYLEGQIPN------QLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~~~~~~------~l~~l~~L~~L~Ls~N~l~  532 (790)
                      +..+++|++|++++|+|+.....      ....+.+|+.|+|++|++.
T Consensus       238 l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            55555555555555555432222      2234556666777776664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.2e-23  Score=213.49  Aligned_cols=207  Identities=25%  Similarity=0.264  Sum_probs=124.4

Q ss_pred             cCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcc-cccCcCCCchhhhhccCCCeEEE
Q 036932          328 SLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDIS-NNLLSGHIPHWIGNFSSDLKVLL  406 (790)
Q Consensus       328 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~p~~~~~~~~~L~~L~  406 (790)
                      .+++|+|++|+++...+..|.++++|++|++++|++....+..+..++.++.++.. .+.++...|..+.+++. |+.|+
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~-L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR-LHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT-CCEEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhccccc-CCEEe
Confidence            34555555555554444455555555555555555555555555555555555443 33343333444444444 55555


Q ss_pred             ccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccc
Q 036932          407 MSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSG  485 (790)
Q Consensus       407 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~  485 (790)
                      +++|.+....+..+...++|+.+++++|.+++..+..+ .+++|+.|++++|++++..+..|..+++|+.+++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            55555444444455555566666666666666555555 56667777777777665556666667777777777777776


Q ss_pred             cCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccC
Q 036932          486 VIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSI  535 (790)
Q Consensus       486 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~  535 (790)
                      ..|.+|..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            66677777777777777777777666666777777777777777766543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.1e-23  Score=212.40  Aligned_cols=253  Identities=20%  Similarity=0.166  Sum_probs=160.5

Q ss_pred             EEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEcc-
Q 036932          257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLS-  335 (790)
Q Consensus       257 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~-  335 (790)
                      +++.++++++ .+|..+   .+.+++|+|++|+++...+.+|.++++|++|++++|++. .++...+..+..++.+... 
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-cccccccccccccccccccc
Confidence            4556666666 677654   346777777777777555566777777777777777776 5666666667777776654 


Q ss_pred             CCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCcccccc
Q 036932          336 GNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGN  415 (790)
Q Consensus       336 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~  415 (790)
                      .+.+....+..|.++++|++|++++|.+....+..+...++|+.+++++|.+++..+..+..... ++.|++++|.+++.
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~-L~~L~l~~N~l~~l  168 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRISSV  168 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCEE
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccc-hhhcccccCccccc
Confidence            44555555666777777777777777776666666666777777777777777555555555555 66666666666655


Q ss_pred             chhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcC
Q 036932          416 IPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISES  494 (790)
Q Consensus       416 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l  494 (790)
                      .+.++..+++|+.+++++|.+++..|..+ .+++|++|++++|++++..+..|..+++|+.|++++|++...-+. ..-.
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~  247 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLW  247 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHH
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHH
Confidence            56666666666666666666666666666 666666666666666665566666666666666666666543211 0001


Q ss_pred             ccccEEeccCccccccCCcccc
Q 036932          495 LTLRFLLLRGNYLEGQIPNQLC  516 (790)
Q Consensus       495 ~~L~~L~L~~N~l~~~~~~~l~  516 (790)
                      ..++.+....+++....|..+.
T Consensus       248 ~~l~~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         248 AWLQKFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             HHHHHCCSEECCCBEEESGGGT
T ss_pred             HHHHhCcCCCCceEeCCchHHc
Confidence            1233444444555555554443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.6e-22  Score=199.15  Aligned_cols=202  Identities=21%  Similarity=0.157  Sum_probs=163.4

Q ss_pred             CCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEec
Q 036932          423 HGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLL  502 (790)
Q Consensus       423 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  502 (790)
                      ...+.+.+.+++.++.. |..+ .+++++|+|++|++++..+..|..+++|++|+|++|+|+.. | .++.+++|++|++
T Consensus         9 ~~~~~~v~C~~~~L~~i-P~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTAL-PPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL   84 (266)
T ss_dssp             STTCCEEECTTSCCSSC-CSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred             cCCCeEEEccCCCCCee-CcCc-CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccc
Confidence            34566677888888754 3332 25788999999999866667788899999999999998843 3 3567889999999


Q ss_pred             cCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccC
Q 036932          503 RGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYG  582 (790)
Q Consensus       503 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  582 (790)
                      ++|++++ .+..+..+++|+.|++++|++.+..+..+                                           
T Consensus        85 s~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------------------------------------  120 (266)
T d1p9ag_          85 SHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGAL-------------------------------------------  120 (266)
T ss_dssp             CSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTT-------------------------------------------
T ss_pred             ccccccc-cccccccccccccccccccccceeecccc-------------------------------------------
Confidence            9999884 56678889999999999998873322211                                           


Q ss_pred             CCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCC
Q 036932          583 NGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWI  661 (790)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L  661 (790)
                                                ..+..++.|++++|.+++..+..+..+. ++.+++++|++++..|..|+.+++|
T Consensus       121 --------------------------~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L  174 (266)
T d1p9ag_         121 --------------------------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (266)
T ss_dssp             --------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             --------------------------ccccccccccccccccceeccccccccccchhcccccccccccCcccccccccc
Confidence                                      2256788999999999866666666666 9999999999999889999999999


Q ss_pred             CEEEccCCcccccCCccccCCCCCCeEecccCcceecC
Q 036932          662 ESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLI  699 (790)
Q Consensus       662 ~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~i  699 (790)
                      +.|||++|+|+ .+|.++..+++|+.|+|++|++.|.+
T Consensus       175 ~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             ceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            99999999999 89999999999999999999998865

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3e-20  Score=187.72  Aligned_cols=200  Identities=28%  Similarity=0.240  Sum_probs=162.5

Q ss_pred             CccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEE
Q 036932          180 TFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLD  259 (790)
Q Consensus       180 ~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  259 (790)
                      ...+.++++++++++.+|..+.  +++++|+|++|.++ .+|...+.++++|++|+|++|.++...  ++..+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccccc--cccccccccccc
Confidence            3455667888888888887653  47999999999998 677766778999999999999998653  456788899999


Q ss_pred             eecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcC
Q 036932          260 VSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNF  339 (790)
Q Consensus       260 Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  339 (790)
                      +++|+++ .++..+ ..+++|++|++++|.+.+..+..+..+.++++|++++|.+. .+|...+..+++|+.+++++|++
T Consensus        84 Ls~N~l~-~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             CCSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ccccccc-cccccc-ccccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccc
Confidence            9999988 455544 35888999999999888777777888888888888888887 77777777888888888888888


Q ss_pred             cccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCc
Q 036932          340 YGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS  388 (790)
Q Consensus       340 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  388 (790)
                      ++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            8877777888888888888888887 67777777888888888888775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.5e-20  Score=206.35  Aligned_cols=380  Identities=20%  Similarity=0.150  Sum_probs=234.2

Q ss_pred             CCCEEEeecCCCCccCChhHHhhcccccEecccCCcccc----ccchhhhcccccccccCcccccccccChhhh----hc
Q 036932          254 FLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEG----YLPSSIGEMKALIFLRLPKNNFSGELPAPLL----TG  325 (790)
Q Consensus       254 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~----~~  325 (790)
                      +|+.||+++|++++.--..+...+++++.|+|++|.++.    .++..+..+++|++|+|++|.++..--..+.    ..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            467888888888743334445567888888888888763    3345566788888888888887521111111    12


Q ss_pred             CCcCcEEEccCCcCccc----ccccccCCCCCcEEEcCCcccccccccc----c-CCCCCCcEEEcccccCcCCCc----
Q 036932          326 CISLGLLDLSGNNFYGQ----IFPKYMNLTQLEFLYLENNKFSGKIEEG----L-SNSNELNELDISNNLLSGHIP----  392 (790)
Q Consensus       326 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~-~~l~~L~~L~Ls~n~l~~~~p----  392 (790)
                      ..+|++|++++|.++..    ++..+..+++|++|++++|.++......    + ...............+.....    
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            34788888888888654    3345667888888888888876422111    1 112233344444433321110    


Q ss_pred             hhhhhccCCCeEEEccCccccccc----hhhhc-cCCCCCEEecCCccccCcccc----cc-cccccceeeccCCcCcc-
Q 036932          393 HWIGNFSSDLKVLLMSKMFLKGNI----PAQLL-NHGSLNLLSVSENCLSGPMTS----SF-NLSSLEHLYLQMNSLSG-  461 (790)
Q Consensus       393 ~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~-~~~~L~~L~l~~n~l~~~~~~----~~-~l~~L~~L~L~~n~l~~-  461 (790)
                      ..+..... ++.++++.+......    ...+. .......+++..+.+......    .. ..+.++.+++++|.+.. 
T Consensus       163 ~~l~~~~~-~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         163 SVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             cccccccc-cccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            11222233 677777766654321    11111 223466777777765532211    11 45678888888887642 


Q ss_pred             ----ccchhhcCCCCCcEEeccCCccccc----CchhhhcCccccEEeccCccccccCCccc-----cCCCCCCEEEccC
Q 036932          462 ----PIPIALFRSSNLITLDLRDNRFSGV----IPHQISESLTLRFLLLRGNYLEGQIPNQL-----CQLRRLGVLDLSH  528 (790)
Q Consensus       462 ----~~p~~~~~~~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~l-----~~l~~L~~L~Ls~  528 (790)
                          ..+........++.+++++|.+...    ...++...+.++.+++++|.+++.....+     .....|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                2233445567888888888887643    22344567788888888888764322222     2346788888888


Q ss_pred             CcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccC
Q 036932          529 NRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNG  608 (790)
Q Consensus       529 N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  608 (790)
                      |.++......+....                                                                 
T Consensus       322 ~~l~~~~~~~l~~~~-----------------------------------------------------------------  336 (460)
T d1z7xw1         322 CSFTAACCSHFSSVL-----------------------------------------------------------------  336 (460)
T ss_dssp             SCCBGGGHHHHHHHH-----------------------------------------------------------------
T ss_pred             cchhhhhhhhccccc-----------------------------------------------------------------
Confidence            887743333332211                                                                 


Q ss_pred             cccccceEEECCCCccccc----CChhhhh-ce-ecceeccCCccccc----cCccccCCCCCCEEEccCCcccccCCcc
Q 036932          609 SNIKYMVGLDLSCNQLTGG----IPSEIGD-LQ-IRGLNLSYNFLSGS----IPGSFSNLKWIESLDLSHNRLSGQVPPR  678 (790)
Q Consensus       609 ~~l~~L~~L~Ls~N~l~g~----ip~~~~~-l~-L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~lsg~ip~~  678 (790)
                      ...+.|+.|||++|+++++    +++.+.. .. |++|+|++|.|+..    +++.+..+++|++|||++|+|+......
T Consensus       337 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~  416 (460)
T d1z7xw1         337 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ  416 (460)
T ss_dssp             HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHH
T ss_pred             ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHH
Confidence            1245789999999998754    3333332 22 99999999999853    4556677899999999999998654444


Q ss_pred             cc-----CCCCCCeEecccCcceecC
Q 036932          679 LT-----ELNFLSNFNVSFNNLSGLI  699 (790)
Q Consensus       679 l~-----~l~~L~~L~ls~N~l~g~i  699 (790)
                      +.     .-..|+.|++++|++....
T Consensus       417 l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         417 LVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             HHHHHHhCCCccCEEECCCCCCCHHH
Confidence            42     3347999999999887543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=6e-17  Score=170.58  Aligned_cols=303  Identities=27%  Similarity=0.308  Sum_probs=197.4

Q ss_pred             cceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEee
Q 036932          182 QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVS  261 (790)
Q Consensus       182 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls  261 (790)
                      ++++|++++++++.+|+.   .++|++|++++|+++ .+|.    ...+|+.|++++|.++....    ..+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~~----lp~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSD----LPPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCS----CCTTCCEEECC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhhh----hcccccccccc
Confidence            466777777777777753   357888888888887 7775    34678888888888775432    22458888888


Q ss_pred             cCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcc
Q 036932          262 NNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG  341 (790)
Q Consensus       262 ~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~  341 (790)
                      +|.+. .+|..  ..+++|++|++++|.+.. .+..   ...+..+.+..+... ...  .+..++.++.++++.|....
T Consensus       107 ~n~l~-~lp~~--~~l~~L~~L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~-~~~--~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         107 NNQLE-KLPEL--QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELP--ELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             SSCCS-SCCCC--TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSS
T ss_pred             ccccc-cccch--hhhccceeeccccccccc-cccc---cccccchhhcccccc-ccc--cccccccceecccccccccc
Confidence            88887 67753  347888888888888763 3333   234455555555443 111  13467778888888887754


Q ss_pred             cccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhc
Q 036932          342 QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL  421 (790)
Q Consensus       342 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  421 (790)
                      ...    .....+.+....+.+. ..+ .+..++.++.+++++|... .+|....    .+..+.+..+.+... +   .
T Consensus       177 ~~~----~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~~~~----~l~~~~~~~~~~~~~-~---~  241 (353)
T d1jl5a_         177 LPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLPP----SLEALNVRDNYLTDL-P---E  241 (353)
T ss_dssp             CCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSCCT----TCCEEECCSSCCSCC-C---C
T ss_pred             ccc----cccccccccccccccc-ccc-ccccccccccccccccccc-ccccccc----ccccccccccccccc-c---c
Confidence            321    1233456666665554 233 3566788888888888766 3443322    267777777766532 1   1


Q ss_pred             cCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEe
Q 036932          422 NHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLL  501 (790)
Q Consensus       422 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  501 (790)
                      ....+...++..+.+.+....   .......++..+.+.+ ++   ..+++|++|++++|+++ .+|..   +++|+.|+
T Consensus       242 ~~~~l~~~~~~~~~~~~l~~l---~~~~~~~~~~~~~~~~-~~---~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~  310 (353)
T d1jl5a_         242 LPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRS-LC---DLPPSLEELNVSNNKLI-ELPAL---PPRLERLI  310 (353)
T ss_dssp             CCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSE-EC---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEE
T ss_pred             ccccccccccccccccccccc---cchhcccccccCcccc-cc---ccCCCCCEEECCCCccC-ccccc---cCCCCEEE
Confidence            234566777777665542211   1244556677776653 22   34578999999999998 45643   57899999


Q ss_pred             ccCccccccCCccccCCCCCCEEEccCCcCcccCCh
Q 036932          502 LRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS  537 (790)
Q Consensus       502 L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~  537 (790)
                      +++|+++ .+|..   +++|+.|++++|+++ .+|.
T Consensus       311 L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         311 ASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            9999998 55643   568999999999987 6664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=1.8e-16  Score=166.81  Aligned_cols=314  Identities=25%  Similarity=0.313  Sum_probs=213.5

Q ss_pred             CCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCC-CCCcEEEc
Q 036932           36 TNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNL-SHLKVLDI  114 (790)
Q Consensus        36 ~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L  114 (790)
                      .++++|||+++.++.++++  .++|++|++++|+|+..+.     ...+|++|++++|.+.. ++    .+ +.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~-----~~~~L~~L~l~~n~l~~-l~----~lp~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPE-----LPQSLKSLLVDNNNLKA-LS----DLPPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCC-----CCTTCCEEECCSSCCSC-CC----SCCTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCccccc-----chhhhhhhhhhhcccch-hh----hhccccccccc
Confidence            4688999999988866543  5789999999999885532     24688999999988873 22    23 46999999


Q ss_pred             cCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCC
Q 036932          115 SYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK  194 (790)
Q Consensus       115 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~  194 (790)
                      ++|.+.. +|. ++.+++|++|+++++.+....     .....+..+.+..+...   ....+..+..++.+.+..+...
T Consensus       106 ~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~l~~~~~~~~---~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         106 SNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLP-----DLPPSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CSSCCSS-CCC-CTTCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCS---SCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccc-ccc-hhhhccceeeccccccccccc-----cccccccchhhcccccc---ccccccccccceeccccccccc
Confidence            9999884 453 678899999999988886432     23456777777654422   2234566778888999888886


Q ss_pred             CcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHH
Q 036932          195 VIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMG  274 (790)
Q Consensus       195 ~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  274 (790)
                      .++...   ...+.+....+.+. .++.  ...++.|+.+++++|.....    .....++..+.+.++.+. ..+..  
T Consensus       176 ~~~~~~---~~~~~l~~~~~~~~-~~~~--~~~l~~L~~l~l~~n~~~~~----~~~~~~l~~~~~~~~~~~-~~~~~--  242 (353)
T d1jl5a_         176 KLPDLP---LSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLT-DLPEL--  242 (353)
T ss_dssp             SCCCCC---TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSC----CSCCTTCCEEECCSSCCS-CCCCC--
T ss_pred             cccccc---cccccccccccccc-cccc--cccccccccccccccccccc----cccccccccccccccccc-ccccc--
Confidence            655432   23456677666655 5554  23688899999998876643    234566888888888887 44432  


Q ss_pred             hhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCc
Q 036932          275 IILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLE  354 (790)
Q Consensus       275 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  354 (790)
                        ...+...++..+.+.+.. ..   .......++..+.+. .++    ..+++|++|++++|+++. +|.   .+++|+
T Consensus       243 --~~~l~~~~~~~~~~~~l~-~l---~~~~~~~~~~~~~~~-~~~----~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~  307 (353)
T d1jl5a_         243 --PQSLTFLDVSENIFSGLS-EL---PPNLYYLNASSNEIR-SLC----DLPPSLEELNVSNNKLIE-LPA---LPPRLE  307 (353)
T ss_dssp             --CTTCCEEECCSSCCSEES-CC---CTTCCEEECCSSCCS-EEC----CCCTTCCEEECCSSCCSC-CCC---CCTTCC
T ss_pred             --cccccccccccccccccc-cc---cchhcccccccCccc-ccc----ccCCCCCEEECCCCccCc-ccc---ccCCCC
Confidence              356666777666554321 10   123344556666665 333    246789999999999874 443   367899


Q ss_pred             EEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEcc
Q 036932          355 FLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMS  408 (790)
Q Consensus       355 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~  408 (790)
                      .|++++|+++ .+|..   +++|++|++++|+++ .+|..    +..++.|.+.
T Consensus       308 ~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~----~~~L~~L~~~  352 (353)
T d1jl5a_         308 RLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI----PESVEDLRMN  352 (353)
T ss_dssp             EEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC----CTTCCEEECC
T ss_pred             EEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcc----ccccCeeECc
Confidence            9999999998 45543   567999999999988 56653    2236666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.6e-19  Score=195.13  Aligned_cols=392  Identities=21%  Similarity=0.108  Sum_probs=199.9

Q ss_pred             CCCcEEEccCCCCCCCC-hhhhcCCCCCCEEeCcCCcCccccc---hhhhhCCCCCcEEEccCCCCCcccccCCCCCCcc
Q 036932          107 SHLKVLDISYNQLSGTL-PSAITTLTSLEYLALLDNNFEGTFL---LNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQ  182 (790)
Q Consensus       107 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~  182 (790)
                      ++|+.||+++|++++.. ...+..++++++|+|++|.++..-.   ...+..+++|++|++++|.... ...        
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~-~~~--------   72 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-VGV--------   72 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH-HHH--------
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCCh-HHH--------
Confidence            35788888888887532 3446667888888888887762111   1234555566666655543210 000        


Q ss_pred             ceEEeCCCCCCCCcchhhh-CCCCCCEEEccCCCCCCcCchh---HhhCCCCCcEEeccCCcccccccCC-----CCCCC
Q 036932          183 LKVLGLPNYNLKVIPSFLL-HQYDLKLLDLSGNNLVGDFPTW---VLRNNTKLEALFLTNNSFTGNLQLP-----KTKHD  253 (790)
Q Consensus       183 L~~L~l~~n~l~~lp~~l~-~l~~L~~L~Ls~n~l~~~ip~~---~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~~~  253 (790)
                                 ..+...+. ...+|++|++++|.+++..-..   .+..+++|++|++++|.++......     .....
T Consensus        73 -----------~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~  141 (460)
T d1z7xw1          73 -----------HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  141 (460)
T ss_dssp             -----------HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             -----------HHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccc
Confidence                       00111111 1235777777777765332111   1234566666666666554311000     00111


Q ss_pred             CCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccc----cChhhhhcCCcC
Q 036932          254 FLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGE----LPAPLLTGCISL  329 (790)
Q Consensus       254 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~----i~~~~~~~l~~L  329 (790)
                      ...........+...-...                     ....+.....++.++++.+.....    ............
T Consensus       142 ~~~~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~  200 (460)
T d1z7xw1         142 RLEKLQLEYCSLSAASCEP---------------------LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL  200 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHH---------------------HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCC
T ss_pred             ccccccccccccchhhhcc---------------------cccccccccccccccccccccccccccccccccccccccc
Confidence            1222222222221000000                     001122233344444444333210    000011122234


Q ss_pred             cEEEccCCcCcccc----cccccCCCCCcEEEcCCccccc-----ccccccCCCCCCcEEEcccccCcCC----Cchhhh
Q 036932          330 GLLDLSGNNFYGQI----FPKYMNLTQLEFLYLENNKFSG-----KIEEGLSNSNELNELDISNNLLSGH----IPHWIG  396 (790)
Q Consensus       330 ~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~  396 (790)
                      ..+++..+.+....    ...+...+.++.+++.+|.+..     ..+........++.+++++|.+...    ....+.
T Consensus       201 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~  280 (460)
T d1z7xw1         201 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR  280 (460)
T ss_dssp             CEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccc
Confidence            44555544443211    1122344555666666555421     1222333445666666666665422    112233


Q ss_pred             hccCCCeEEEccCccccccchhhh----c-cCCCCCEEecCCccccCcccccc-----cccccceeeccCCcCccc----
Q 036932          397 NFSSDLKVLLMSKMFLKGNIPAQL----L-NHGSLNLLSVSENCLSGPMTSSF-----NLSSLEHLYLQMNSLSGP----  462 (790)
Q Consensus       397 ~~~~~L~~L~l~~n~l~~~~~~~~----~-~~~~L~~L~l~~n~l~~~~~~~~-----~l~~L~~L~L~~n~l~~~----  462 (790)
                      .... ++.+++++|.++......+    . ....|+.+++++|.++......+     ..++|++|+|++|++++.    
T Consensus       281 ~~~~-l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~  359 (460)
T d1z7xw1         281 AKES-LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE  359 (460)
T ss_dssp             HCTT-CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred             cccc-ccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccch
Confidence            3344 6666666666653322222    1 23568888888887765433322     456788999999888643    


Q ss_pred             cchhhc-CCCCCcEEeccCCccccc----CchhhhcCccccEEeccCccccccCCcc----cc-CCCCCCEEEccCCcCc
Q 036932          463 IPIALF-RSSNLITLDLRDNRFSGV----IPHQISESLTLRFLLLRGNYLEGQIPNQ----LC-QLRRLGVLDLSHNRIS  532 (790)
Q Consensus       463 ~p~~~~-~~~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~----l~-~l~~L~~L~Ls~N~l~  532 (790)
                      ++..+. ..+.|++|+|++|+++..    ++..+..+++|++|++++|+++......    +. +...|+.|++.+|.+.
T Consensus       360 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            333443 457799999999998753    3455667789999999999987543332    22 3457999999999988


Q ss_pred             ccCChhHH
Q 036932          533 GSIPSCLT  540 (790)
Q Consensus       533 g~~p~~~~  540 (790)
                      ...+..+.
T Consensus       440 ~~~~~~l~  447 (460)
T d1z7xw1         440 EEMEDRLQ  447 (460)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55554443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=5.2e-17  Score=159.40  Aligned_cols=208  Identities=18%  Similarity=0.225  Sum_probs=122.8

Q ss_pred             ccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEE
Q 036932          278 QKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLY  357 (790)
Q Consensus       278 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  357 (790)
                      .++..++++.+++++..  .+..+.+|++|++.+|.++ .++.  +..+++|++|++++|.+++..+  +..++++++++
T Consensus        19 ~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~   91 (227)
T d1h6ua2          19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELE   91 (227)
T ss_dssp             HHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE
T ss_pred             HHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeecccc--ccccccccccc
Confidence            33444555555555432  3345556666666666655 4432  3455666666666665554322  45555555555


Q ss_pred             cCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCcccc
Q 036932          358 LENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLS  437 (790)
Q Consensus       358 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  437 (790)
                      +++|.++. + ..+..+++|+.++++++...+                         .  ..+...+.+..+.++.+.+.
T Consensus        92 ~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~-------------------------~--~~~~~~~~~~~l~~~~~~~~  142 (227)
T d1h6ua2          92 LSGNPLKN-V-SAIAGLQSIKTLDLTSTQITD-------------------------V--TPLAGLSNLQVLYLDLNQIT  142 (227)
T ss_dssp             CCSCCCSC-C-GGGTTCTTCCEEECTTSCCCC-------------------------C--GGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccc-c-ccccccccccccccccccccc-------------------------c--chhccccchhhhhchhhhhc
Confidence            55555542 2 234455555555555554432                         1  12334455666666666665


Q ss_pred             CcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccC
Q 036932          438 GPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQ  517 (790)
Q Consensus       438 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~  517 (790)
                      ...+ ...+++|++|++++|.+++.  ..+.++++|++|++++|++++. + .+..+++|++|++++|++++..|  +.+
T Consensus       143 ~~~~-~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~  215 (227)
T d1h6ua2         143 NISP-LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSP--LAN  215 (227)
T ss_dssp             CCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred             hhhh-hccccccccccccccccccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCcc--ccc
Confidence            4332 22566777777877777643  2367778888888888888753 3 37778888888888888875432  778


Q ss_pred             CCCCCEEEccC
Q 036932          518 LRRLGVLDLSH  528 (790)
Q Consensus       518 l~~L~~L~Ls~  528 (790)
                      +++|+.|++++
T Consensus       216 l~~L~~L~lsn  226 (227)
T d1h6ua2         216 TSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEEEEE
T ss_pred             CCCCCEEEeeC
Confidence            88888888863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.6e-16  Score=154.30  Aligned_cols=191  Identities=25%  Similarity=0.370  Sum_probs=118.8

Q ss_pred             hhcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCc
Q 036932           31 GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLK  110 (790)
Q Consensus        31 ~~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  110 (790)
                      .++.+++|++|++++|+|+.++++..+++|++|++++|.+++..   .+..+++|+++++++|.++. + ..+.++++|+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~---~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~  110 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLKN-V-SAIAGLQSIK  110 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG---GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred             CHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc---cccccccccccccccccccc-c-cccccccccc
Confidence            44566777777777777776666777777777777777776543   36677777777777776653 2 2466777777


Q ss_pred             EEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCC
Q 036932          111 VLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPN  190 (790)
Q Consensus       111 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~  190 (790)
                      +++++++...+.  ..+...+.++.+.++++.+....   .+.++++|++|++++|                        
T Consensus       111 ~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n------------------------  161 (227)
T d1h6ua2         111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNA------------------------  161 (227)
T ss_dssp             EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSS------------------------
T ss_pred             cccccccccccc--chhccccchhhhhchhhhhchhh---hhcccccccccccccc------------------------
Confidence            777777766543  23555666777777666665322   2445555555555544                        


Q ss_pred             CCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeec
Q 036932          191 YNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSN  262 (790)
Q Consensus       191 n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~  262 (790)
                       .+...+. +..+++|++|++++|.++ .++.  ++++++|++|++++|++++..  ++..+++|+.|++++
T Consensus       162 -~~~~~~~-l~~l~~L~~L~Ls~n~l~-~l~~--l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         162 -QVSDLTP-LANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -CCCCCGG-GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             -ccccchh-hcccccceecccCCCccC-CChh--hcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence             4433322 455666666666666665 3443  346666777777777666542  355667777777653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.3e-17  Score=161.92  Aligned_cols=220  Identities=13%  Similarity=0.126  Sum_probs=132.8

Q ss_pred             CEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEcc
Q 036932          256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLS  335 (790)
Q Consensus       256 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~  335 (790)
                      ++++.++..++ .+|..+   .+++++|++++|+++...+.+|.++++|++|++++|.+...++...|.++++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            46777777776 677654   24677777777777644444566666677777766666555555555566666666654


Q ss_pred             C-CcCcccccccccCCCCCcEEEcCCccccccccc-ccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCcccc
Q 036932          336 G-NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEE-GLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLK  413 (790)
Q Consensus       336 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~  413 (790)
                      . |.+....+..|.++++|+++++++|.+....+. .+..++.+..+..+++.+.                         
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~-------------------------  141 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-------------------------  141 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-------------------------
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccc-------------------------
Confidence            3 445544555555666666666666655432111 1122233333333333333                         


Q ss_pred             ccchhhhccC-CCCCEEecCCccccCccccccccccccee-eccCCcCccccchhhcCCCCCcEEeccCCcccccCchhh
Q 036932          414 GNIPAQLLNH-GSLNLLSVSENCLSGPMTSSFNLSSLEHL-YLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQI  491 (790)
Q Consensus       414 ~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~l~~L~~L-~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~  491 (790)
                      ...+..+..+ ..++.|++++|.++...+..+..++++.+ ++++|+++...+..|.++++|++|++++|+++...+..+
T Consensus       142 ~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~  221 (242)
T d1xwdc1         142 TIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL  221 (242)
T ss_dssp             EECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSC
T ss_pred             cccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHH
Confidence            2223333333 25667777777777666665655555554 567778874444567888999999999999986656667


Q ss_pred             hcCccccEEeccC
Q 036932          492 SESLTLRFLLLRG  504 (790)
Q Consensus       492 ~~l~~L~~L~L~~  504 (790)
                      .++++|+.+++.+
T Consensus       222 ~~l~~L~~l~~~~  234 (242)
T d1xwdc1         222 ENLKKLRARSTYN  234 (242)
T ss_dssp             TTCCEEESSSEES
T ss_pred             cCCcccccCcCCC
Confidence            7877777776644

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.1e-17  Score=161.39  Aligned_cols=57  Identities=16%  Similarity=0.179  Sum_probs=26.9

Q ss_pred             CCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEcc
Q 036932          108 HLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLS  164 (790)
Q Consensus       108 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~  164 (790)
                      ++++||+++|+|+...+..|.++++|++|++++|.+...++...|.++++++++.+.
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            445555555555433333445555555555555544433443444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.6e-16  Score=152.00  Aligned_cols=179  Identities=22%  Similarity=0.360  Sum_probs=128.8

Q ss_pred             ecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccc
Q 036932          430 SVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEG  509 (790)
Q Consensus       430 ~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  509 (790)
                      .+.++.+++.++.. .+.+|++|++++|.+++ ++ .+..+++|++|++++|++++..  .++.+++|+.|++++|++++
T Consensus        30 ~l~~~~~~~~~~~~-~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~  104 (210)
T d1h6ta2          30 NLKKKSVTDAVTQN-ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD  104 (210)
T ss_dssp             HTTCSCTTSEECHH-HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             HhCcCccCCccCHH-HhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc
Confidence            34444444433321 45677888888888774 22 3677888888888888887543  35778888888888888874


Q ss_pred             cCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCccccc
Q 036932          510 QIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIF  589 (790)
Q Consensus       510 ~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  589 (790)
                       +| .++.+++|+.|++++|.+. .++. +                                                  
T Consensus       105 -l~-~l~~l~~L~~L~l~~~~~~-~~~~-l--------------------------------------------------  130 (210)
T d1h6ta2         105 -LS-SLKDLKKLKSLSLEHNGIS-DING-L--------------------------------------------------  130 (210)
T ss_dssp             -GG-GGTTCTTCCEEECTTSCCC-CCGG-G--------------------------------------------------
T ss_pred             -cc-ccccccccccccccccccc-cccc-c--------------------------------------------------
Confidence             33 4777888888888888775 2221 1                                                  


Q ss_pred             CcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccC
Q 036932          590 PQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSH  668 (790)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~  668 (790)
                                         ..++.++.+++++|.+++  +..++.+. |+.+++++|++++..  .++++++|+.|||++
T Consensus       131 -------------------~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         131 -------------------VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSK  187 (210)
T ss_dssp             -------------------GGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCS
T ss_pred             -------------------cccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCC
Confidence                               124577888888888873  33455665 899999999998643  388999999999999


Q ss_pred             CcccccCCccccCCCCCCeEeccc
Q 036932          669 NRLSGQVPPRLTELNFLSNFNVSF  692 (790)
Q Consensus       669 N~lsg~ip~~l~~l~~L~~L~ls~  692 (790)
                      |+|+. +| .++.+++|++|+|++
T Consensus       188 N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         188 NHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCCC-Ch-hhcCCCCCCEEEccC
Confidence            99984 55 589999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=2.3e-16  Score=150.03  Aligned_cols=128  Identities=24%  Similarity=0.264  Sum_probs=87.9

Q ss_pred             EEEccCccccccchhhhccCCCCCEEecCCccccCcc-cccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCC
Q 036932          404 VLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPM-TSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN  481 (790)
Q Consensus       404 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N  481 (790)
                      .++.++++++ .+|..+.  +++++|+|++|.|++.+ +..| .+++|++|++++|++.+..+..+..+++|++|+|++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            3444444443 3343332  35677777777776533 3444 6777777777777777667777777777777777777


Q ss_pred             cccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCccc
Q 036932          482 RFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS  534 (790)
Q Consensus       482 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~  534 (790)
                      ++++..|.+|.++++|++|+|++|+|++..+.+|..+++|++|+|++|++.+.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            77777777777777777777777777777777777777778888877777643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.4e-15  Score=146.69  Aligned_cols=165  Identities=28%  Similarity=0.363  Sum_probs=105.8

Q ss_pred             CCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEE
Q 036932           34 NLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLD  113 (790)
Q Consensus        34 ~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (790)
                      .+.+|++|++++|.++.+.++..+++|++|++++|+|++..   .+..+++|++|++++|++++ ++ .+.++++|+.|+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK---PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc---ccccCccccccccccccccc-cc-cccccccccccc
Confidence            35567777777777776666777777777777777776543   35667777777777777664 23 466677777777


Q ss_pred             ccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCC
Q 036932          114 ISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNL  193 (790)
Q Consensus       114 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l  193 (790)
                      +++|.+...  ..+..+++++++++++|.+++.   ..+.++++|++++++                         +|++
T Consensus       119 l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~---~~~~~l~~L~~l~l~-------------------------~n~l  168 (210)
T d1h6ta2         119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLE-------------------------DNQI  168 (210)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECC-------------------------SSCC
T ss_pred             ccccccccc--cccccccccccccccccccccc---ccccccccccccccc-------------------------cccc
Confidence            777766532  2466667777777777766532   124445555555554                         4555


Q ss_pred             CCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEecc
Q 036932          194 KVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLT  237 (790)
Q Consensus       194 ~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~  237 (790)
                      ..++. +..+++|+.|++++|.++ .++.  ++++++|++|+|+
T Consensus       169 ~~i~~-l~~l~~L~~L~Ls~N~i~-~l~~--l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         169 SDIVP-LAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELF  208 (210)
T ss_dssp             CCCGG-GTTCTTCCEEECCSSCCC-BCGG--GTTCTTCSEEEEE
T ss_pred             ccccc-ccCCCCCCEEECCCCCCC-CChh--hcCCCCCCEEEcc
Confidence            44443 556677777777777776 5553  4567777777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=3.2e-16  Score=149.09  Aligned_cols=109  Identities=21%  Similarity=0.232  Sum_probs=87.7

Q ss_pred             CCEEecCCccccCcccccccccccceeeccCCcCcccc-chhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccC
Q 036932          426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPI-PIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG  504 (790)
Q Consensus       426 L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  504 (790)
                      .++++.+++.++..+...  .+++++|+|++|+|++.+ +..|..+++|+.|++++|++.+..+..+..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            457888888888554332  257888999999987644 56678888999999999998888888888888899999999


Q ss_pred             ccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932          505 NYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP  536 (790)
Q Consensus       505 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p  536 (790)
                      |++++..|.+|.++++|+.|+|++|+|++..|
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~  119 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCH
Confidence            99988888888889999999999998884333

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.4e-15  Score=142.76  Aligned_cols=163  Identities=25%  Similarity=0.388  Sum_probs=92.3

Q ss_pred             cCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEE
Q 036932           33 ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVL  112 (790)
Q Consensus        33 ~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  112 (790)
                      ..++++++|+++++.|+.++++..+++|++|++++|++++..   .+.++++|++|++++|.+... + .++++++|++|
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~---~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L  111 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGL  111 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred             HHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc---cccCCcccccccccccccccc-c-ccccccccccc
Confidence            345666677777776666666666677777777777666443   256666666666666665532 2 35666666666


Q ss_pred             EccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCC
Q 036932          113 DISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYN  192 (790)
Q Consensus       113 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~  192 (790)
                      ++++|.+...  ..+..+++|+.|++++|.+.. ++  .+..+++|+.|++                         .+|+
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~--~l~~~~~L~~L~l-------------------------~~n~  161 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLNF-------------------------SSNQ  161 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEEC-------------------------CSSC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhcc-cc--ccccccccccccc-------------------------cccc
Confidence            6666665533  235556666666666665542 21  2444444444444                         4444


Q ss_pred             CCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEE
Q 036932          193 LKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEAL  234 (790)
Q Consensus       193 l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  234 (790)
                      +..++. +..+++|++|++++|+++ .++.  ++++++|++|
T Consensus       162 l~~l~~-l~~l~~L~~L~ls~N~i~-~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         162 VTDLKP-LANLTTLERLDISSNKVS-DISV--LAKLTNLESL  199 (199)
T ss_dssp             CCCCGG-GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEE
T ss_pred             ccCCcc-ccCCCCCCEEECCCCCCC-CCcc--ccCCCCCCcC
Confidence            444432 455666666666666665 3442  3355555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=4.3e-15  Score=142.04  Aligned_cols=145  Identities=30%  Similarity=0.351  Sum_probs=123.2

Q ss_pred             ccCccceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEec
Q 036932           11 QRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL   90 (790)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L   90 (790)
                      ...++.|.+.++++..+.  +++.+++|++|++++|+++.++.+.++++|++|++++|.+....   .+..+++|++|++
T Consensus        39 l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT---PLANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCcccccCCccccccccccccccccc---ccccccccccccc
Confidence            457888999999998874  68999999999999999998778999999999999999987543   4889999999999


Q ss_pred             CCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCC
Q 036932           91 RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRT  167 (790)
Q Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~  167 (790)
                      +++.+...  +.+.++++|+.|++++|++.. ++ .+..+++|++|++.+|.+++ ++  .+.++++|++|++++|.
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~-l~--~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTD-LK--PLANLTTLERLDISSNK  183 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSC
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccC-Cc--cccCCCCCCEEECCCCC
Confidence            99988753  458899999999999999974 33 58999999999999999985 33  36777777777776654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.9e-15  Score=150.83  Aligned_cols=224  Identities=20%  Similarity=0.195  Sum_probs=114.1

Q ss_pred             CEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEcc
Q 036932          256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLS  335 (790)
Q Consensus       256 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~  335 (790)
                      +.+|++++.+.......+..  ..+..+.++........ .......+|++|+++++.+.+.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            35677766654222222221  23445555554443222 2223445777888887777654445556677788888888


Q ss_pred             CCcCcccccccccCCCCCcEEEcCCc-ccccc-cccccCCCCCCcEEEccccc-CcC-CCchhhhhccCCCeEEEccCcc
Q 036932          336 GNNFYGQIFPKYMNLTQLEFLYLENN-KFSGK-IEEGLSNSNELNELDISNNL-LSG-HIPHWIGNFSSDLKVLLMSKMF  411 (790)
Q Consensus       336 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~-~~p~~~~~~~~~L~~L~l~~n~  411 (790)
                      ++.++...+..+..+++|++|++++| .++.. +......+++|++|++++|. ++. .++..+......|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            77777666666777777777777775 34321 11223456777777777653 321 1112222222225555554431


Q ss_pred             --cccc-chhhhccCCCCCEEecCCccccCcccccccccccceeeccCC-cCccccchhhcCCCCCcEEeccCC-ccccc
Q 036932          412 --LKGN-IPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMN-SLSGPIPIALFRSSNLITLDLRDN-RFSGV  486 (790)
Q Consensus       412 --l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~~~~L~~L~L~~N-~l~~~  486 (790)
                        ++.. +......+                       ++|++|++++| .+++.....+..+++|++|++++| .+++.
T Consensus       160 ~~i~~~~l~~l~~~~-----------------------~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         160 KNLQKSDLSTLVRRC-----------------------PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             GGSCHHHHHHHHHHC-----------------------TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             ccccccccccccccc-----------------------ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH
Confidence              2211 22222334                       44555555443 244344444455555555555553 34444


Q ss_pred             CchhhhcCccccEEeccCc
Q 036932          487 IPHQISESLTLRFLLLRGN  505 (790)
Q Consensus       487 ~p~~~~~l~~L~~L~L~~N  505 (790)
                      ....+.++++|+.|+++++
T Consensus       217 ~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         217 TLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGGGCTTCCEEECTTS
T ss_pred             HHHHHhcCCCCCEEeeeCC
Confidence            4444455555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.7e-15  Score=149.08  Aligned_cols=224  Identities=20%  Similarity=0.178  Sum_probs=131.4

Q ss_pred             CEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEeccc
Q 036932          207 KLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMS  286 (790)
Q Consensus       207 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls  286 (790)
                      +.+|++++.+.......+..  .....+.++........ .......+|++||++++.+.+.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46788877665443333332  23455666655444321 1223456788999988887755445556678899999999


Q ss_pred             CCccccccchhhhcccccccccCccc-ccccccChhhhhcCCcCcEEEccCCc-Cccc-cccccc-CCCCCcEEEcCCcc
Q 036932          287 DNRFEGYLPSSIGEMKALIFLRLPKN-NFSGELPAPLLTGCISLGLLDLSGNN-FYGQ-IFPKYM-NLTQLEFLYLENNK  362 (790)
Q Consensus       287 ~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~i~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~-~l~~L~~L~L~~n~  362 (790)
                      +|.+++..+..++.+++|++|++++| .++..--..+..++++|++|+++++. ++.. ....+. ..++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            99888778888888889999999885 44422112334578888888888753 3322 111222 34677777777642


Q ss_pred             --cccc-cccccCCCCCCcEEEccccc-CcCCCchhhhhccCCCeEEEccCc-cccccchhhhccCCCCCEEecCCc
Q 036932          363 --FSGK-IEEGLSNSNELNELDISNNL-LSGHIPHWIGNFSSDLKVLLMSKM-FLKGNIPAQLLNHGSLNLLSVSEN  434 (790)
Q Consensus       363 --l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n  434 (790)
                        ++.. +...+..+++|++|++++|. +++..+..+..++. |++|++++| .+++.....+.++++|+.|+++++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~-L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY-LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT-CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCc-CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              3211 22223456667777776653 44444445555544 555555553 344444444455555555555444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=4.7e-15  Score=155.24  Aligned_cols=64  Identities=19%  Similarity=0.205  Sum_probs=34.7

Q ss_pred             CCCCCcEEeccCCccccc----CchhhhcCccccEEeccCcccccc-----CCccccCCCCCCEEEccCCcCc
Q 036932          469 RSSNLITLDLRDNRFSGV----IPHQISESLTLRFLLLRGNYLEGQ-----IPNQLCQLRRLGVLDLSHNRIS  532 (790)
Q Consensus       469 ~~~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~-----~~~~l~~l~~L~~L~Ls~N~l~  532 (790)
                      ..+.|+.+++++|+++..    +...+..++.|+.|++++|.++..     +...+..+++|+.|++++|+++
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccc
Confidence            345666666666665532    222334455666666666665431     2233455666666666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=8.3e-14  Score=121.01  Aligned_cols=119  Identities=19%  Similarity=0.211  Sum_probs=91.9

Q ss_pred             CEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCC
Q 036932           39 KILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQ  118 (790)
Q Consensus        39 ~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  118 (790)
                      |+|++++|+|+.++.+..+++|++|++++|+|+..+  ..+..+++|++|++++|.+.+. | .++++++|++|++++|+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp--~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCC--GGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcch--hhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence            678899998887778888889999999999888653  2578888889999998888853 3 58888999999999998


Q ss_pred             CCCCC-hhhhcCCCCCCEEeCcCCcCccc--cchhhhhCCCCCcEE
Q 036932          119 LSGTL-PSAITTLTSLEYLALLDNNFEGT--FLLNSLANHSKLEVL  161 (790)
Q Consensus       119 i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~l~~l~~L~~L  161 (790)
                      |+... ...++.+++|++|++++|.++..  .+......+++|+.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            88553 25688889999999999888632  233445556666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.6e-14  Score=129.14  Aligned_cols=130  Identities=24%  Similarity=0.290  Sum_probs=106.6

Q ss_pred             hhcCCCCCCEEEcCCCCCCcccc-CcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCC
Q 036932           31 GFANLTNLKILDLSGCGITTLQG-LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHL  109 (790)
Q Consensus        31 ~~~~l~~L~~L~Ls~n~i~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  109 (790)
                      .|.+..++|+|||++|+|+.++. +..+++|++|+|++|.|+..   ..+..+++|++|++++|.+....+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l---~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc---CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            46788899999999999996665 47789999999999999854   258889999999999999987766667889999


Q ss_pred             cEEEccCCCCCCCCh-hhhcCCCCCCEEeCcCCcCccccc---hhhhhCCCCCcEEEcc
Q 036932          110 KVLDISYNQLSGTLP-SAITTLTSLEYLALLDNNFEGTFL---LNSLANHSKLEVLLLS  164 (790)
Q Consensus       110 ~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~L~  164 (790)
                      ++|++++|+++.... ..+..+++|++|++++|.++. .+   ...+..+++|++||-.
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTE
T ss_pred             ccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCCC
Confidence            999999999985422 468889999999999998863 33   2357888999988743

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=9.4e-14  Score=145.15  Aligned_cols=228  Identities=20%  Similarity=0.173  Sum_probs=119.0

Q ss_pred             ccchhhhcccccccccCcccccccccChh---hhhcCCcCcEEEccCCcCccc----------ccccccCCCCCcEEEcC
Q 036932          293 YLPSSIGEMKALIFLRLPKNNFSGELPAP---LLTGCISLGLLDLSGNNFYGQ----------IFPKYMNLTQLEFLYLE  359 (790)
Q Consensus       293 ~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~---~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~  359 (790)
                      .+...+.....|+.|+|++|.+...-...   .+...++|+.++++++.....          +...+..+++|++|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            34455667777888888888765322111   123456777777776654321          11223455666666666


Q ss_pred             Ccccccc----cccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCcc
Q 036932          360 NNKFSGK----IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENC  435 (790)
Q Consensus       360 ~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  435 (790)
                      +|.++..    +...+..+++|+.|++++|.+.......++..   +..+         .........+.|+.+++++|.
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~---l~~~---------~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA---LQEL---------AVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH---HHHH---------HHHHHHHTCCCCCEEECCSSC
T ss_pred             ccccccccccchhhhhcccccchheeccccccccccccccccc---cccc---------ccccccccCcccceeeccccc
Confidence            6665532    22233445666666666665542111111100   0000         000111234556666666666


Q ss_pred             ccCccccc----c-cccccceeeccCCcCccc-----cchhhcCCCCCcEEeccCCccccc----CchhhhcCccccEEe
Q 036932          436 LSGPMTSS----F-NLSSLEHLYLQMNSLSGP-----IPIALFRSSNLITLDLRDNRFSGV----IPHQISESLTLRFLL  501 (790)
Q Consensus       436 l~~~~~~~----~-~l~~L~~L~L~~n~l~~~-----~p~~~~~~~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~  501 (790)
                      ++......    + ..+.|+.|++++|+++..     +...+..+++|+.|++++|.++..    +...+..+++|++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            55322221    1 345666777777666531     223455566777777777766532    233455666777777


Q ss_pred             ccCccccccCCcc----ccC--CCCCCEEEccCCcCc
Q 036932          502 LRGNYLEGQIPNQ----LCQ--LRRLGVLDLSHNRIS  532 (790)
Q Consensus       502 L~~N~l~~~~~~~----l~~--l~~L~~L~Ls~N~l~  532 (790)
                      +++|.+++.....    +..  .+.|+.||+++|++.
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            7777765432222    222  356777788777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-13  Score=126.67  Aligned_cols=114  Identities=20%  Similarity=0.128  Sum_probs=88.8

Q ss_pred             ccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcC
Q 036932           50 TLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITT  129 (790)
Q Consensus        50 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  129 (790)
                      ..+.+.++..+++|+|++|+|+.+.  ..+..+++|++|+|++|.+...  +.|..+++|++|++++|+++...+..+..
T Consensus        10 ~~~~~~n~~~lr~L~L~~n~I~~i~--~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_          10 QAAQYTNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             TSCEEECTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             hhHhccCcCcCcEEECCCCCCCccC--ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccc
Confidence            4456788889999999999998663  3457788999999999998854  35888999999999999998766667788


Q ss_pred             CCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCC
Q 036932          130 LTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRT  167 (790)
Q Consensus       130 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~  167 (790)
                      +++|++|++++|.++..-....+..+++|++|++++|+
T Consensus        86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             ccccccceeccccccccccccccccccccchhhcCCCc
Confidence            99999999999988743222456667777777766654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=4.7e-13  Score=116.15  Aligned_cols=117  Identities=23%  Similarity=0.280  Sum_probs=99.6

Q ss_pred             cceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCcc-ccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCC
Q 036932           15 KWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI   93 (790)
Q Consensus        15 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   93 (790)
                      |+|++++++++.++  .++++++|++|++++|+|+.+ +.+..+++|++|++++|.|++..   .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~---~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD---GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC---ccccccccCeEECCCC
Confidence            67899999999876  589999999999999999955 57999999999999999998653   5899999999999999


Q ss_pred             cCcccC-CcccCCCCCCcEEEccCCCCCCC---ChhhhcCCCCCCEE
Q 036932           94 NIKGHL-PDCLKNLSHLKVLDISYNQLSGT---LPSAITTLTSLEYL  136 (790)
Q Consensus        94 ~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L  136 (790)
                      .+.... ...+..+++|++|++++|.++..   ....+..+|+|+.|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            998653 35789999999999999998643   33455667888776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=6.6e-13  Score=125.85  Aligned_cols=130  Identities=24%  Similarity=0.278  Sum_probs=86.0

Q ss_pred             cCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccc
Q 036932          486 VIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFV  565 (790)
Q Consensus       486 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (790)
                      .++..+..+++|++|+|++|+|+. ++ .+..+++|+.|++++|+++ .+|.....                        
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~------------------------   91 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV------------------------   91 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHH------------------------
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccc------------------------
Confidence            345566667777777777777763 33 3666777777777777776 44432211                        


Q ss_pred             ccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccC
Q 036932          566 GSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSY  644 (790)
Q Consensus       566 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~  644 (790)
                                                                   ++.|+.|++++|+++. ++ .+..+. |+.|++++
T Consensus        92 ---------------------------------------------~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~  124 (198)
T d1m9la_          92 ---------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSN  124 (198)
T ss_dssp             ---------------------------------------------HHHCCEEECSEEECCC-HH-HHHHHHHSSEEEESE
T ss_pred             ---------------------------------------------cccccccccccccccc-cc-ccccccccccccccc
Confidence                                                         2357778888887773 33 355555 88888888


Q ss_pred             CccccccC-ccccCCCCCCEEEccCCcccccCCcc----------ccCCCCCCeEe
Q 036932          645 NFLSGSIP-GSFSNLKWIESLDLSHNRLSGQVPPR----------LTELNFLSNFN  689 (790)
Q Consensus       645 N~l~g~ip-~~l~~l~~L~~LdLs~N~lsg~ip~~----------l~~l~~L~~L~  689 (790)
                      |+|+.... ..++.+++|+.|+|++|.+....+..          +..+++|+.||
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             chhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            88874322 46788888888888888887665543          45677777766

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=2.2e-12  Score=122.14  Aligned_cols=126  Identities=22%  Similarity=0.266  Sum_probs=65.3

Q ss_pred             hhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCC
Q 036932          394 WIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSN  472 (790)
Q Consensus       394 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~  472 (790)
                      .+..+.. |+.|++++|.++. ++ .+..+++|++|++++|.++.. +... .+++|++|++++|+++. + ..+..+++
T Consensus        43 sl~~L~~-L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~  116 (198)
T d1m9la_          43 TLSTLKA-CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIAS-L-SGIEKLVN  116 (198)
T ss_dssp             HHHHTTT-CCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEECSEEECCC-H-HHHHHHHH
T ss_pred             HHhcccc-cceeECcccCCCC-cc-cccCCccccChhhcccccccc-cccccccccccccccccccccc-c-cccccccc
Confidence            3333333 4444444444432 22 244455555555555555432 2222 34456666666666653 2 23555566


Q ss_pred             CcEEeccCCcccccCc-hhhhcCccccEEeccCccccccCCcc----------ccCCCCCCEEE
Q 036932          473 LITLDLRDNRFSGVIP-HQISESLTLRFLLLRGNYLEGQIPNQ----------LCQLRRLGVLD  525 (790)
Q Consensus       473 L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~----------l~~l~~L~~L~  525 (790)
                      |+.|++++|+++.... ..+..+++|+.|++++|.+....+..          +..+++|+.||
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            6666666666653321 34566666666666666665433321          45577777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.5e-10  Score=102.11  Aligned_cols=106  Identities=22%  Similarity=0.248  Sum_probs=70.6

Q ss_pred             CCCEEEcCCCCCC-ccccCcCCCCCCEEeCCCCC-CCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEc
Q 036932           37 NLKILDLSGCGIT-TLQGLTKLKNLEALDLSYNN-ISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDI  114 (790)
Q Consensus        37 ~L~~L~Ls~n~i~-~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (790)
                      ..++++.+++.+. .+..+..+++|++|++++|. ++. ++..+|..+++|++|++++|+|+.+.+.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccc-cCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3455677766655 45567777777777776553 653 33456777777777777777777666777777777777777


Q ss_pred             cCCCCCCCChhhhcCCCCCCEEeCcCCcCc
Q 036932          115 SYNQLSGTLPSAITTLTSLEYLALLDNNFE  144 (790)
Q Consensus       115 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  144 (790)
                      ++|+++...+..|..+ +|++|+|++|.+.
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhccc-cccccccCCCccc
Confidence            7777774444444433 5777777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.9e-10  Score=102.67  Aligned_cols=111  Identities=19%  Similarity=0.052  Sum_probs=89.3

Q ss_pred             cCCCCCEEecCCccccCcccccccccccceeeccCC-cCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEE
Q 036932          422 NHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMN-SLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFL  500 (790)
Q Consensus       422 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  500 (790)
                      .+...+.++.+++.+...+.....+++|++|++++| .++...+.+|.++++|+.|++++|+|+...+.+|..+++|++|
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            344566788888777755444337889999999766 4886556789999999999999999998889999999999999


Q ss_pred             eccCccccccCCccccCCCCCCEEEccCCcCcc
Q 036932          501 LLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISG  533 (790)
Q Consensus       501 ~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g  533 (790)
                      +|++|+++...+..+. ..+|+.|+|++|++..
T Consensus        86 ~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          86 NLSFNALESLSWKTVQ-GLSLQELVLSGNPLHC  117 (156)
T ss_dssp             ECCSSCCSCCCSTTTC-SCCCCEEECCSSCCCC
T ss_pred             eccCCCCcccChhhhc-cccccccccCCCcccC
Confidence            9999999955555554 4579999999999963

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.5e-07  Score=85.03  Aligned_cols=42  Identities=29%  Similarity=0.331  Sum_probs=17.2

Q ss_pred             hcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCcccc
Q 036932          467 LFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLE  508 (790)
Q Consensus       467 ~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  508 (790)
                      +..+++|+.|++++|+++...+-.......|+.|++++|.+.
T Consensus        87 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          87 VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            334444444444444444322222222334444444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.4e-07  Score=81.80  Aligned_cols=64  Identities=27%  Similarity=0.386  Sum_probs=25.1

Q ss_pred             cccccccccCcccccccccCh--hhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccc
Q 036932          300 EMKALIFLRLPKNNFSGELPA--PLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFS  364 (790)
Q Consensus       300 ~l~~L~~L~Ls~n~l~~~i~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  364 (790)
                      .+++|++|++++|+++ .++.  ..+..+++|+.|++++|.++...+..+.....|+++++++|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCcccc-CCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3444444444444443 2221  12233444444444444444322222222334444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.86  E-value=6.1e-06  Score=74.48  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=67.1

Q ss_pred             hcCCCCCCEEEcCCC-CCC------ccccCcCCCCCCEEeCCCCCCCCCcC---ccccCCCCCCCEEecCCCcCccc---
Q 036932           32 FANLTNLKILDLSGC-GIT------TLQGLTKLKNLEALDLSYNNISGSSE---SQGVCELKNLSEFILRGINIKGH---   98 (790)
Q Consensus        32 ~~~l~~L~~L~Ls~n-~i~------~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~L~~n~l~~~---   98 (790)
                      ..+.++|++|+|+++ .+.      ....+...+.|++|+|++|.+.....   ...+...+.|++|+|++|.+...   
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            346688999999874 465      23457788888888888888762211   12334456777777777776532   


Q ss_pred             -CCcccCCCCCCcEEEccCCCCCCC-------ChhhhcCCCCCCEEeCcCC
Q 036932           99 -LPDCLKNLSHLKVLDISYNQLSGT-------LPSAITTLTSLEYLALLDN  141 (790)
Q Consensus        99 -~~~~~~~l~~L~~L~Ls~n~i~~~-------~~~~~~~l~~L~~L~Ls~n  141 (790)
                       +..++...+.|++|++++|++...       +...+...+.|+.|+++.+
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence             233456667777777777655432       1223344556666665544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.46  E-value=6.3e-05  Score=67.54  Aligned_cols=64  Identities=9%  Similarity=0.015  Sum_probs=32.2

Q ss_pred             hcCCCCCcEEeccCCcccccC----chhhhcCccccEEeccCccccc-------cCCccccCCCCCCEEEccCCc
Q 036932          467 LFRSSNLITLDLRDNRFSGVI----PHQISESLTLRFLLLRGNYLEG-------QIPNQLCQLRRLGVLDLSHNR  530 (790)
Q Consensus       467 ~~~~~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~-------~~~~~l~~l~~L~~L~Ls~N~  530 (790)
                      +...+.|+.|+|++|.++...    ..++...++|++|++++|.+..       .+...+...+.|+.|+++.+.
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            334455555555555554321    1223444556666665554331       123344456777777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.40  E-value=2.1e-05  Score=70.82  Aligned_cols=118  Identities=14%  Similarity=0.105  Sum_probs=65.9

Q ss_pred             eeeeChhhhcCCCCCCEEEcCC-CCCC------ccccCcCCCCCCEEeCCCCCCCCCcC---ccccCCCCCCCEEecCCC
Q 036932           24 ILFFIVVGFANLTNLKILDLSG-CGIT------TLQGLTKLKNLEALDLSYNNISGSSE---SQGVCELKNLSEFILRGI   93 (790)
Q Consensus        24 ~~~~~~~~~~~l~~L~~L~Ls~-n~i~------~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~L~~n   93 (790)
                      +-++......+.+.|++|++++ +.++      ...++...++|++|++++|.+.....   ...+...+.++.+++++|
T Consensus         5 i~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_           5 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            3344445556778899999887 4565      22457778888888888887763221   113344566666666666


Q ss_pred             cCccc----CCcccCCCCCCcEEEcc--CCCCCCC----ChhhhcCCCCCCEEeCcCC
Q 036932           94 NIKGH----LPDCLKNLSHLKVLDIS--YNQLSGT----LPSAITTLTSLEYLALLDN  141 (790)
Q Consensus        94 ~l~~~----~~~~~~~l~~L~~L~Ls--~n~i~~~----~~~~~~~l~~L~~L~Ls~n  141 (790)
                      .+...    +..++...+.|+.++|+  +|.+...    +...+...++|++|+++.+
T Consensus        85 ~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          85 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            65432    22344555666654443  3444321    2223344555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.89  E-value=0.00014  Score=65.23  Aligned_cols=111  Identities=15%  Similarity=0.159  Sum_probs=68.5

Q ss_pred             ccCCCCCEEecCC-ccccCcccc----cc-cccccceeeccCCcCccc----cchhhcCCCCCcEEeccCCcccccC---
Q 036932          421 LNHGSLNLLSVSE-NCLSGPMTS----SF-NLSSLEHLYLQMNSLSGP----IPIALFRSSNLITLDLRDNRFSGVI---  487 (790)
Q Consensus       421 ~~~~~L~~L~l~~-n~l~~~~~~----~~-~l~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~L~~N~l~~~~---  487 (790)
                      .+.+.|+.|++++ +.++.....    .+ ..+.|++|++++|.++..    +...+...+.++.+++++|.++...   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4456677777765 345432221    12 456777777777777533    2334556678888888888776432   


Q ss_pred             -chhhhcCccccEEec--cCccccc----cCCccccCCCCCCEEEccCCcC
Q 036932          488 -PHQISESLTLRFLLL--RGNYLEG----QIPNQLCQLRRLGVLDLSHNRI  531 (790)
Q Consensus       488 -p~~~~~l~~L~~L~L--~~N~l~~----~~~~~l~~l~~L~~L~Ls~N~l  531 (790)
                       ...+...++|+.++|  ++|.+..    .+...+...++|+.|+++.+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence             234556677876555  4566654    2344556788899999887754