Citrus Sinensis ID: 036950

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
Protein Sequence
MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEPAPMVLIARHDTSIKLSMIAIESTRTVLISPLL
Secondary Structure (PSIPRED)
cccccEEEEEEccccccccccccccccccccccHHHHcccccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccEEEEEcccccccHHHHHHHccccccEEEEEEcccccccccccccccccccccccccEEEEEEEEEcccccccccccccEEEEcccccccccccEEEEEEEEccEEEEEccccccccEEEEcccccccHHHHHHHHccccccEEEEEEcccccccccccccccccccccEEEEEEEEEEEEccccccccccHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccHHccccccHHHHHHHHHccccEEEccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcHHHccccccEcccEcccccEEEEEEEEEccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEcccccEEEEEcccccHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccEEEEEEEEEEccccccccccccEEEcEEEcccccccccccEEEEEEcccEEEcccccccccEEEEcccccccHHHHHHHcccccccEEEEEEcHHHccccccccccccccccccEEEEEEEEEEEccccccEEEcccccHHHHcHcccccccEccccHHHHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcHHHHHEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEHcHccccEEEcEEEEEcccEEEEcccc
Coil and Loop (DISEMBL)
mkkgenavftippelaygesgspptippnamlqFDVELLGWTSVKDICKDGGIFKKILVEgkkwenpkdldEVFVKYEVRLedgtlisksdgveftvgdGYFCAALAKAVKTMKKGEKVLLTVkpqyafgkngrpatgdedavpsnanLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYENQMMVQWFKLhdgtvfvkkghdeeplfefkideEQVIDGLDRAVKTMKKGEVALVTiepeyafgscssekelaivpanstlFYEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNyigydssfsdEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKaleidpdnsleagwGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAksassmakqepapmvlIARHDTSIKLSMIAIESTRTVLISPLL
Flexible Loop (DISEMBL)
mkkgenavftippelaygesGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILvegkkwenpkdldeVFVKYEVRledgtlisksdgvefTVGDGYFCAALAKAVKTMKKGEKVLltvkpqyafgkngrpatgdedaVPSNANLHITLEMvswktvsditkdkKVLKKILKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPlfefkideeqvIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIeaagkkkeegnvLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLeldkldikkaleidpdnsleagwgvRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEPAPMVLIARHDTSIKLSMiaiestrtvlispll
Low Complexity Region (SEG)
MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSditkdkkvlkkilkEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQekieaagkkkeegNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEPAPMVLIARHDTSIKLSMIAIESTRTVLISPLL
Disordered region (IsUnstruct)
*****************************AMLQFDVELLGWTSVKDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFG****************ANLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESW*******************VLFKAGKYERASKRYEQAVNYIGYDSS*******QAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKIN************************************************
Disordered Region (DISOPRED)
*K*GENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE***AIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSS*****KQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE**KKDVQFYG****************************************IAIESTRTVLISPLL
Disordered Region (DISEMBL)
MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLE***********EPAPMVLIARHDTSIKLSMIAIESTRTVLISPLL
Disordered Region (DISPRO)
*KKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSAS*******APMVLIARHDTSIKLSMIAIESTRTVLISPLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEPAPMVLIARHDTSIKLSMIAIESTRTVLISPLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	469	2.2.26 [Sep-21-2011]
Q9FJL3	578	Peptidyl-prolyl cis-trans	yes	no	0.882	0.716	0.688	1e-172
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.886	0.754	0.684	1e-171
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.886	0.744	0.691	1e-166
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.784	0.801	0.329	3e-52
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.801	0.819	0.329	1e-51
P30416	458	Peptidyl-prolyl cis-trans	yes	no	0.784	0.803	0.322	2e-49
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	no	0.784	0.803	0.320	1e-48
P27124	458	Peptidyl-prolyl cis-trans	yes	no	0.784	0.803	0.322	2e-45
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.752	0.772	0.326	3e-45
Q64378	456	Peptidyl-prolyl cis-trans	no	no	0.825	0.848	0.305	2e-44

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  605 bits (1559), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 312/453 (68%), Positives = 367/453 (81%), Gaps = 39/453 (8%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENA+FTIPPELAYGE+GSPPTIPPNA LQFDVEL+ W SVKDIC DGG+ KKI+VE
Sbjct: 112 MKKGENAIFTIPPELAYGETGSPPTIPPNATLQFDVELIAWRSVKDICGDGGVSKKIIVE 171

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G+KWE PKDLDEV+VKYE RLEDGT++ KSDGVEFTV +G+FC AL+KAVKTMK+GEKVL
Sbjct: 172 GEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGVEFTVKEGHFCPALSKAVKTMKRGEKVL 231

Query: 121 LTVKPQYAFGKNGRPAT-GDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGD 179
           LTVKPQY FG+ GRPA+ G + A+P NA L I LE+VSWKTV ++T D+KV+KKILKEG+
Sbjct: 232 LTVKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTVVEVTDDRKVIKKILKEGE 291

Query: 180 GYE--NQMMVQWFKL----HDGT-VFVKKGH--DEEPLFEFKIDEEQVIDGLDRAVKTMK 230
           GYE  N+  +   KL     DGT VFVKKGH  DEEP FEFKIDEEQVI+GL++AV  MK
Sbjct: 292 GYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEP-FEFKIDEEQVIEGLEKAVMGMK 350

Query: 231 KGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAA 290
           KGEVAL+TI PEYAFGS  S++ELA++P NST++YEVELVSFIKEKESWDMNTQE+IEAA
Sbjct: 351 KGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIKEKESWDMNTQERIEAA 410

Query: 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKL 350
           GKKKEEGNVLFKAGKY RASKRYE+ V YI YDS+F +EEK+++K LKI CNLN+AACKL
Sbjct: 411 GKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDAACKL 470

Query: 351 KLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEA 387
           KLK+YK+A KL +KVLE+D                       +LDIKKALEIDPDN    
Sbjct: 471 KLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNK--- 527

Query: 388 GWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKI 420
              V++EYK LKEKV+EYNKKD +FY N+ +K+
Sbjct: 528 --EVKIEYKKLKEKVKEYNKKDAKFYSNMLSKM 558

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  602 bits (1553), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 310/453 (68%), Positives = 362/453 (79%), Gaps = 37/453 (8%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENAVFTIP ELAYGESGSPPTIP NA LQFDVELL W SVKDICKDGG+FKKIL  
Sbjct: 104 MKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAV 163

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G+KWENPKDLDEV VK+E +LEDGT++ KSDGVEFTV DG+FC AL KAVKTMKKGEKVL
Sbjct: 164 GEKWENPKDLDEVLVKFEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVL 223

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG 180
           LTVKPQY FG+ G+PA+  E AVP NA L I LE+VSWKTVS++T D KV+KK+LKEGDG
Sbjct: 224 LTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDG 283

Query: 181 YE--NQMMVQWF----KLHDGTVFVKKGH--DEEPLFEFKIDEEQVIDGLDRAVKTMKKG 232
           YE  N+  V       KL DGTVF+KKGH  +EEP FEFK DEEQV+DGLDRAV  MKKG
Sbjct: 284 YERPNEGAVVKVKLIGKLQDGTVFLKKGHGENEEP-FEFKTDEEQVVDGLDRAVMKMKKG 342

Query: 233 EVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGK 292
           EVALVTI+PEYAFGS  S++ELA+VP NST+ YEV+L++F KE+ESWDMNT+EKIEAA K
Sbjct: 343 EVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASK 402

Query: 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL 352
           KKEEGN  FK GKY  ASKRYE+AV +I YD+SFS+EEK+QAK LK+ CNLN+AACKLKL
Sbjct: 403 KKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKL 462

Query: 353 KEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGW 389
           K+YKQAEKLC+KVLEL+                       + D+KKALEIDP+N      
Sbjct: 463 KDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNR----- 517

Query: 390 GVRMEYKLLKEKVREYNKKDVQFYGNIFAKINK 422
            V++E K LKEK++E+NKK+ +FYGN+FAK++K
Sbjct: 518 EVKLEQKRLKEKMKEFNKKEAKFYGNMFAKLSK 550

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  586 bits (1510), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 312/451 (69%), Positives = 358/451 (79%), Gaps = 35/451 (7%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENA+FTIPPELAYGESGSPPTIP NA LQFDVELL WTSV+DI KDGGIFKKIL E
Sbjct: 107 MKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKE 166

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G KWENPKD DEVFVKYE RLEDGT++SKS+GVEFTV DG+ C ALAKAVKTMKKGEKVL
Sbjct: 167 GDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVL 226

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG 180
           L VKPQY FG+ GRPA G+  AVP NA+L I LE+VSWKTV++I  DKK+LKK+LKE +G
Sbjct: 227 LAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG 286

Query: 181 YE--NQMMVQWF----KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
           YE  N+  V       KL DGTVF+KKGHDE+  FEFK DEE VI+GLDRAV  MKKGEV
Sbjct: 287 YERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEV 346

Query: 235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKK 294
           ALVTI PEYA+GS  S K+ AIVP NST+ YEVELVSF+K+KESWD+N  EKIEAAG KK
Sbjct: 347 ALVTIPPEYAYGSTES-KQDAIVPPNSTVIYEVELVSFVKDKESWDLNNSEKIEAAGTKK 405

Query: 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE 354
           EEGN LFK+GKY RASKRYE+A  +I YD+SFS++EK+Q+K LKITCNLNNAACKLKLK+
Sbjct: 406 EEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAACKLKLKD 465

Query: 355 YKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGV 391
           YKQAEKLC+KVLELD                       ++DIKKALEIDP+N       V
Sbjct: 466 YKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEVDIKKALEIDPENR-----DV 520

Query: 392 RMEYKLLKEKVREYNKKDVQFYGNIFAKINK 422
           ++ YK LKEK++E NKKD +FY N+F+K+ K
Sbjct: 521 KLTYKTLKEKIKEINKKDAKFYSNMFSKMTK 551

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  206 bits (524), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 141/428 (32%), Positives = 228/428 (53%), Gaps = 60/428 (14%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGT----LISKSDGVEFTVGDGYFCA 104
           +D G+ K I  EG   E P   D VFV Y   L DGT     + + D   F +G G    
Sbjct: 29  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDI 164
           A   A+ TMK GE   +T KP+YA+G  G P       +P NA L   +E+  +K   D+
Sbjct: 89  AWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-----IPPNATLVFEVELFEFKG-EDL 142

Query: 165 TK--DKKVLKKILKEGDGYENQMMVQWFKLHDGTVF--VKKGHDEEPLFE-----FKIDE 215
           T+  D  ++++I   G+GY         K ++G +     +G+ ++ LF+     F+I E
Sbjct: 143 TEEEDGGIIRRIQTRGEGYA--------KPNEGAIVEVALEGYYKDKLFDQRELRFEIGE 194

Query: 216 EQVID---GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
            + +D   GL+RA++ M+KGE ++V ++P YAFGS   EK    +P N+ L YE+ L SF
Sbjct: 195 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSF 252

Query: 273 IKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQ 332
            K KESW+MN++EK+E +   KE G V FK GKY++A  +Y++ V+++ Y+SSFS+EE Q
Sbjct: 253 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ 312

Query: 333 QAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----------------------- 369
           +A+ L++  +LN A C LKL+ +  A + C+K LELD                       
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELA 372

Query: 370 KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSA 429
           + D +K L++ P+N        + +  + ++++R    ++ + Y N+F ++ + E    A
Sbjct: 373 RADFQKVLQLYPNNK-----AAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKA 427

Query: 430 SSMAKQEP 437
            + +   P
Sbjct: 428 EASSGDHP 435

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  204 bits (518), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 224/422 (53%), Gaps = 46/422 (10%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGT----LISKSDGVEFTVGDGYFCA 104
           +D G+ K I  EG   E P   D VFV Y   L DGT     + + D   F +G G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDRFSFDLGKGEVIK 88

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDI 164
           A   AV TMK GE   +T KP+YA+G  G P       +P NA L   +E+  +K   D+
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYGLAGSPPK-----IPPNATLVFEVELFEFKG-EDL 142

Query: 165 TK--DKKVLKKILKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVID-- 220
           T+  D  ++++I   G+GY         ++     F  +  D   L  F++ E + +D  
Sbjct: 143 TEEEDGGIIRRIRTRGEGYAKPNEGALVEVALEGYFKDQVFDRREL-RFEVGEGESMDLP 201

Query: 221 -GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESW 279
            GL++A++ M+KGE ++V ++P YAFGS   EK    +P N+ L YE+ L SF K KESW
Sbjct: 202 CGLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEK--FQIPPNAELKYEIHLKSFEKAKESW 259

Query: 280 DMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKI 339
           +M+++EK+E +   KE G V FK GKY++A  +Y++ V+++ Y+SSFSDE+ ++A+ L++
Sbjct: 260 EMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAEKAQALRL 319

Query: 340 TCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKA 376
             +LN A C LKL+ +  A + C+K LELD                       + D +K 
Sbjct: 320 ASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKV 379

Query: 377 LEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQE 436
           L++ P N        + +  + ++++R+  +K+ + Y N+F ++ + E    A+  A  +
Sbjct: 380 LQLYPSNK-----AAKAQLVVCQQRIRKQLEKEKKLYANMFERLAEEETKAKATVAAGDQ 434

Query: 437 PA 438
           PA
Sbjct: 435 PA 436

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score =  197 bits (500), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/428 (32%), Positives = 219/428 (51%), Gaps = 60/428 (14%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGT----LISKSDGVEFTVGDGYFCA 104
           +D G+ K I  EG   E P   D VFV Y   L DGT     + + D   F +G G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDI 164
           A   AV TMK GE   +T KP+YA+G  G P       +P NA L   +E+  +K   D+
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYGAAGSPPK-----IPPNATLVFEVELFEFKG-EDL 142

Query: 165 TK--DKKVLKKILKEGDGYENQMMVQWFKLHDGTVF--VKKGHDEEPLFE-----FKIDE 215
           T+  D  ++++I   G+GY         + +DG +     +G+ ++ LF+     F++ E
Sbjct: 143 TEEEDGGIIRRIRTRGEGYA--------RPNDGAMVEVALEGYHKDRLFDQRELCFEVGE 194

Query: 216 EQVID---GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
            + +D   GL+ A++ M+KGE ++V ++P YAFGS    KE   +P ++ L YEV L SF
Sbjct: 195 GESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVG--KERFQIPPHAELRYEVRLKSF 252

Query: 273 IKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQ 332
            K KESW+M++ EK+E +   KE G   FK GKY++A  +Y++ V+++ Y+SSFS EE Q
Sbjct: 253 EKAKESWEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQ 312

Query: 333 QAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----------------------- 369
           +   L++  +LN A C LKL+ +  A + C+K LELD                       
Sbjct: 313 KVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 370 KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSA 429
           + D +K L++ P N        + +  + +++ R    ++ + Y N+F ++ + E    A
Sbjct: 373 RADFQKVLQLYPSNK-----AAKTQLAVCQQRTRRQLAREKKLYANMFERLAEEEHKVKA 427

Query: 430 SSMAKQEP 437
              A   P
Sbjct: 428 EVAAGDHP 435

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score =  194 bits (494), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 137/428 (32%), Positives = 218/428 (50%), Gaps = 60/428 (14%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGT----LISKSDGVEFTVGDGYFCA 104
           +D G+ K I  EG   E     D VFV Y   L DGT     + + D   F +G G    
Sbjct: 29  QDEGVLKVIKREGTGTETAMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDI 164
           A   AV TMK GE   +T KP+YA+G  G P       +P NA L   +E+  +K   D+
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYGSAGSPPK-----IPPNATLVFEVELFEFKG-EDL 142

Query: 165 TKDKK--VLKKILKEGDGYENQMMVQWFKLHDGTVF--VKKGHDEEPLFE-----FKIDE 215
           T+D+   ++++I   G+GY         + +DG +     +G+  + LF+     F++ E
Sbjct: 143 TEDEDGGIIRRIRTRGEGYA--------RPNDGAMVEVALEGYYNDRLFDQRELCFEVGE 194

Query: 216 EQVID---GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
            + +D   GL+ A++ M+KGE ++V ++P YAFGS    KE   +P ++ L YEV L SF
Sbjct: 195 GESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVG--KERFQIPPHAELRYEVHLKSF 252

Query: 273 IKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQ 332
            K K SW+MN++EK+E +   KE G V FK GKY++A  +Y++ V+++ Y+SSFS EE Q
Sbjct: 253 EKAKASWEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQ 312

Query: 333 QAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----------------------- 369
           +   L++  +LN A C LKL+ +  A + C+K LELD                       
Sbjct: 313 KVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 370 KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSA 429
           + D +K L++ P N        + +  + +++ R    ++ + Y N+F ++ + E     
Sbjct: 373 RADFQKVLQLYPSNK-----AAKTQLAVCQQRTRRQLAREKKLYANMFERLAEEEHKAKT 427

Query: 430 SSMAKQEP 437
              A   P
Sbjct: 428 EVAAGDHP 435

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P27124|FKBP4_RABIT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/428 (32%), Positives = 225/428 (52%), Gaps = 60/428 (14%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGT----LISKSDGVEFTVGDGYFCA 104
           +D G+ K I  EG   E P   D VFV Y   L DGT     + + D   F +G G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDI 164
           A   AV TMK GE   +T KP+YA+G  G P       +P NA L   +E+  +K   D+
Sbjct: 89  AWDIAVATMKVGELCRITCKPEYAYGSAGSPPK-----IPPNATLVFEVELFEFKG-EDL 142

Query: 165 TKDKK--VLKKILKEGDGYENQMMVQWFKLHDGTVF--VKKGHDEEPLFE-----FKIDE 215
           T D+   ++++I   G+GY         + +DG +     +G+ ++ LF+     F++ E
Sbjct: 143 TDDEDGGIIRRIRTRGEGYA--------RPNDGAIVEVALEGYYKDRLFDQRELRFEVGE 194

Query: 216 EQVID---GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
            + +D   GL++A++ M+KGE +++ ++P YAFG+   EK    +P  + L YEV L SF
Sbjct: 195 GESLDLPCGLEKAIQRMEKGEHSILYLKPSYAFGNAGKEK--FQIPPYAELKYEVHLKSF 252

Query: 273 IKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQ 332
            K KESW+M+++EK+E +   KE G V FK GKY++A  +Y++ V+++ Y+SSFS EE Q
Sbjct: 253 EKAKESWEMSSEEKLEQSAIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSSEEVQ 312

Query: 333 QAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----------------------- 369
           +A+ L++  +LN A C LKL+ +  A + C+K LELD                       
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAVESCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 370 KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSA 429
           + D +K L++ P N        + +  + ++++R+   ++ + Y N+F ++ + E    A
Sbjct: 373 RADFQKVLQLYPSNK-----AAKAQLAVCQQRIRKQIAREKKLYANMFERLAEEENKAKA 427

Query: 430 SSMAKQEP 437
              A   P
Sbjct: 428 EVAAGDHP 435

Immunophilin protein with PPIase and co-chaperone activities. Component of unligated steroid receptors heterocomplexes thought interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments. The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  183 bits (464), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/407 (32%), Positives = 206/407 (50%), Gaps = 54/407 (13%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGT-LISKSDGVE---FTVGDGYFCA 104
           KD G+ K +   G   E P   D+V+V Y  +L +G    S  D  E   F++G G    
Sbjct: 29  KDRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIK 88

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDI 164
           A    V TMKKGE   L  KP+YA+G     ATG    +PSNA L   +E++++K   D+
Sbjct: 89  AWDIGVSTMKKGEICHLLCKPEYAYG-----ATGSLPKIPSNATLFFEVELLNFKG-EDL 142

Query: 165 TKDKKVLKKILKEGDGYENQMMVQWFKLH-----DGTVFVKKGHDEEPLFEFKIDEEQVI 219
            +D  ++++  + G+GY N       ++H      G VF  +         F + E +  
Sbjct: 143 LEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRD------VAFTVGEGEDH 196

Query: 220 D---GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEK 276
           D   G+D+A++ M++ E  ++ + P Y FG     K   I P N+ L YEV L SF K K
Sbjct: 197 DIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPK-FGIEP-NAELIYEVTLKSFEKAK 254

Query: 277 ESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKV 336
           ESW+M+T+EK+E A   KEEG V FK GKY +A  +Y + V+++  +   S++E + ++ 
Sbjct: 255 ESWEMDTKEKLEQAAIVKEEGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASES 314

Query: 337 LKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDI 373
             +   LN A C LKL+EY +A + C K L LD                       K D 
Sbjct: 315 FLLAAFLNLAMCYLKLREYAKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374

Query: 374 KKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKI 420
           +K LE++P N        R++  + ++K +E+N++D + Y N+F K 
Sbjct: 375 EKVLEVNPQNK-----AARLQIVVCQKKAKEHNERDRRIYANMFKKF 416

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q64378|FKBP5_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Mus musculus GN=Fkbp5 PE=1 SV=1

 Score =  180 bits (457), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 211/429 (49%), Gaps = 42/429 (9%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDG----VEFTVGDGYFCA 104
           KD G+ K +   G   E P   D+V+V Y+  L DG     S        F++G G    
Sbjct: 29  KDRGVLKIVKRVGTSDEAPMFGDKVYVHYKGMLSDGKKFDSSHDRKKPFAFSLGQGQVIK 88

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDI 164
           A    V TMKKGE   L  KP+YA+G     + G    +PSNA L   +E++ +K   D+
Sbjct: 89  AWDIGVSTMKKGEICHLLCKPEYAYG-----SAGHLQKIPSNATLFFEIELLDFKG-EDL 142

Query: 165 TKDKKVLKKILKEGDGYENQMMVQWFKLH-DGTVFVKKGHDEEPLFEFKIDEEQVID-GL 222
            +D  V+++I ++G+GY N       K+H +G    +     + +F     E+  I  G+
Sbjct: 143 FEDSGVIRRIKRKGEGYSNPNEGATVKVHLEGCCGGRTFDCRDVVFVVGEGEDHDIPIGI 202

Query: 223 DRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMN 282
           D+A+  M++ E  ++ + P Y FG     K   I P N+ L YEV L SF K KESW+M+
Sbjct: 203 DKALVKMQREEQCILYLGPRYGFGEAGKPK-FGIDP-NAELMYEVTLKSFEKAKESWEMD 260

Query: 283 TQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCN 342
           T+EK+  A   KE+G V FK GKY +A  +Y + V+++  +   S++E + ++   +   
Sbjct: 261 TKEKLTQAAIVKEKGTVYFKGGKYTQAVIQYRKIVSWLEMEYGLSEKESKASESFLLAAF 320

Query: 343 LNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEI 379
           LN A C LKL+EY +A + C K L LD                       K D +K L +
Sbjct: 321 LNLAMCYLKLREYNKAVECCDKALGLDSANEKGLYRRGEAQLLMNDFESAKGDFEKVLAV 380

Query: 380 DPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEPAP 439
           +P N        R++  + + K +E+N++D + Y N+F K  + +  + AS    ++   
Sbjct: 381 NPQNR-----AARLQISMCQRKAKEHNERDRRVYANMFKKFAERDAKEEASKAGSKKAVE 435

Query: 440 MVLIARHDT 448
                +H++
Sbjct: 436 GAAGKQHES 444

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	469
356528282	570	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.927	0.763	0.726	0.0
356512417	570	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.933	0.768	0.723	0.0
224131530	577	predicted protein [Populus trichocarpa]	0.936	0.760	0.732	0.0
118486491	608	unknown [Populus trichocarpa]	0.916	0.707	0.733	0.0
355329948	573	FK506-binding protein [Nicotiana tabacum	0.936	0.766	0.700	0.0
224065421	575	predicted protein [Populus trichocarpa]	0.925	0.754	0.697	0.0
359497288	571	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.921	0.756	0.700	0.0
449498811	571	PREDICTED: peptidyl-prolyl cis-trans iso	0.927	0.761	0.696	0.0
449459832	571	PREDICTED: peptidyl-prolyl cis-trans iso	0.927	0.761	0.694	0.0
255589766	574	peptidylprolyl isomerase, putative [Rici	0.916	0.749	0.696	1e-180

>gi|356528282|ref|XP_003532733.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/471 (72%), Positives = 392/471 (83%), Gaps = 36/471 (7%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENA+FTIPPELAYGESGSPPTIPPNA LQFDVELL WTSVKDICKDGGI K I+ E
Sbjct: 103 MKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGILKNIITE 162

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G+KW+NPKDLDEVFVKYE RLEDG +ISKSDGVEFTV +GYFC ALAKAVKTMKKGEKVL
Sbjct: 163 GEKWDNPKDLDEVFVKYEARLEDGIVISKSDGVEFTVEEGYFCPALAKAVKTMKKGEKVL 222

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG 180
           L VKPQYAFG++GRPA+GDE AVP NA+L + LE+VSWKTVSDIT D+KVLKK LKEG+G
Sbjct: 223 LNVKPQYAFGESGRPASGDEGAVPPNASLQVDLELVSWKTVSDITNDRKVLKKTLKEGEG 282

Query: 181 YE---NQMMVQ---WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
           YE   +  +VQ     KL DGTVF+KKG+D++  FEFKIDEEQV DGLD+AVK+MKKGE+
Sbjct: 283 YERPNDGAVVQVKLIGKLQDGTVFIKKGYDDQQPFEFKIDEEQVTDGLDQAVKSMKKGEI 342

Query: 235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKK 294
           AL+ I+PEYAFG   S +ELA VP NST++YEVEL+SFIKEKESWD+NTQEKIEAAGKKK
Sbjct: 343 ALLIIQPEYAFGPSGSSQELANVPPNSTVYYEVELLSFIKEKESWDLNTQEKIEAAGKKK 402

Query: 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE 354
           EEGN LFK GKYERASKRYE+A+ ++ YDSSFSDEEKQ+ K LKITCNLNNAACKLKLK+
Sbjct: 403 EEGNALFKVGKYERASKRYEKAIKFVEYDSSFSDEEKQKTKALKITCNLNNAACKLKLKD 462

Query: 355 YKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGV 391
           YKQAEK+C+KVLELD                       ++DIKKALEI+PDN       V
Sbjct: 463 YKQAEKMCTKVLELDSRNVKALYRRAQGYLHLVDLDLAEMDIKKALEIEPDNR-----DV 517

Query: 392 RMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEPAPMVL 442
           +MEYK+LK+KVREYNKKD QFY +IFAK+NKLEQA++A+  AKQEP PM +
Sbjct: 518 KMEYKILKQKVREYNKKDAQFYSSIFAKMNKLEQARTAT--AKQEPVPMTI 566

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512417|ref|XP_003524915.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like isoform 1 [Glycine max]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/474 (72%), Positives = 393/474 (82%), Gaps = 36/474 (7%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENA+FTIPPELAYGESGSPPTIPPNA LQFDVELL WTSVKDICKDGGI K I+ E
Sbjct: 103 MKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGILKNIITE 162

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G+KW+NPKDLDEVFVK+E RLEDGT+ISKSDGVEFTV +GYFC ALAKAVKTMKKGEKVL
Sbjct: 163 GEKWDNPKDLDEVFVKFEARLEDGTVISKSDGVEFTVEEGYFCPALAKAVKTMKKGEKVL 222

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG 180
           L VKPQYAFG++GRPA GDE AVP NA L + LE+VSWKTVSDITKD+KVLKK LKEG+G
Sbjct: 223 LNVKPQYAFGESGRPALGDEGAVPPNAYLQLDLELVSWKTVSDITKDRKVLKKTLKEGEG 282

Query: 181 YE---NQMMVQ---WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
           YE   +  +VQ     KL DGTVFVKKG+ +E  FEFKIDEEQVIDGLD+AVK MKKGE+
Sbjct: 283 YERPNDGAVVQVKLIGKLQDGTVFVKKGYVDEQPFEFKIDEEQVIDGLDQAVKNMKKGEI 342

Query: 235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKK 294
           AL+ I+PEYAFG   S +ELA VP NST++YEVEL+SF+KEKESWD+NTQEKIEAAGKKK
Sbjct: 343 ALLIIQPEYAFGPSGSSQELANVPPNSTVYYEVELLSFVKEKESWDLNTQEKIEAAGKKK 402

Query: 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE 354
           EEGN  FK GKYERASKRYE+A+ ++ YDSSFSDEEKQQ K LKITCNLNNAACKLKLK+
Sbjct: 403 EEGNAFFKVGKYERASKRYEKAIKFVEYDSSFSDEEKQQTKALKITCNLNNAACKLKLKD 462

Query: 355 YKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGV 391
           YKQAEK+C+KVLELD                       ++DIKKALEI+P+N       V
Sbjct: 463 YKQAEKMCTKVLELDSRNVKALYRRAQAYLHLVDLDLAEMDIKKALEIEPNNR-----DV 517

Query: 392 RMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEPAPMVLIAR 445
           +MEYK+LK+KVRE+NKKD QFYG+IFAK+NKLEQA++A+  AKQEP PM + ++
Sbjct: 518 KMEYKILKQKVREHNKKDAQFYGSIFAKMNKLEQARTAT--AKQEPVPMTIDSK 569

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131530|ref|XP_002321107.1| predicted protein [Populus trichocarpa] gi|222861880|gb|EEE99422.1| predicted protein [Populus trichocarpa]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/474 (73%), Positives = 395/474 (83%), Gaps = 35/474 (7%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENAVFTIPPELAYGESGSPPTIPPNA LQFDVELL WTSVKDICKDGGIFKKI+VE
Sbjct: 109 MKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIIVE 168

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G+KW+NPKDLDEVFVKYE RLE+GT++SKSDGVEFTVG+GYFC ALAKAVKTMKKGEKVL
Sbjct: 169 GEKWDNPKDLDEVFVKYEARLENGTVVSKSDGVEFTVGEGYFCPALAKAVKTMKKGEKVL 228

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG 180
           LTVKPQY FG+NGR A GDE AVP NA L I LE++SWKTVSD+ KDKKV+KKILKEG+G
Sbjct: 229 LTVKPQYGFGENGRTAAGDEGAVPPNATLEIMLELLSWKTVSDVMKDKKVMKKILKEGEG 288

Query: 181 YE---NQMMVQ---WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
           YE   +  +VQ     KL DGT+FVKKGH+EEP FEFKIDEEQVIDGLDRAVKTMKKGEV
Sbjct: 289 YERPDDGTVVQVKLIGKLEDGTIFVKKGHEEEPPFEFKIDEEQVIDGLDRAVKTMKKGEV 348

Query: 235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKK 294
           ALVTI+PEYAFG   S+++LA VP N+T++YEVE++SF KEKESWDMNTQEKIEAAGKKK
Sbjct: 349 ALVTIQPEYAFGRSESQQDLATVPVNATVYYEVEMISFTKEKESWDMNTQEKIEAAGKKK 408

Query: 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE 354
           EEGN  FKAGKYERAS+RYE+A  +I YDSSF+DEEKQQ+KVLKI+C LNNAACKLKLK+
Sbjct: 409 EEGNAWFKAGKYERASRRYEKAAKFIEYDSSFTDEEKQQSKVLKISCKLNNAACKLKLKD 468

Query: 355 YKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGV 391
           YK+AEKLCSKVLELD                       ++DIK+ALEIDPDN       V
Sbjct: 469 YKEAEKLCSKVLELDGKNVKALYRRAQAYIQLVDLDLAEIDIKRALEIDPDNR-----DV 523

Query: 392 RMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEPAPMVLIAR 445
           ++E K+LK+KVREYNKK+ QFY NIFAK+NKLEQ  S  + AKQ+  PM + ++
Sbjct: 524 KLENKILKDKVREYNKKEAQFYSNIFAKMNKLEQTNSTMA-AKQDAMPMTIDSK 576

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486491|gb|ABK95085.1| unknown [Populus trichocarpa]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/466 (73%), Positives = 390/466 (83%), Gaps = 36/466 (7%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MK+GENAVFTIPPELAYGESGSPPTIPPNA LQFDVELL WTSVKDICKDGGIFKKI+VE
Sbjct: 109 MKRGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIIVE 168

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G+KW+NPKDLDEVFVKYE RLE+GT++SKSDGVEFTVG+GYFC ALAKAVKTMKKGEKVL
Sbjct: 169 GEKWDNPKDLDEVFVKYEARLENGTVVSKSDGVEFTVGEGYFCPALAKAVKTMKKGEKVL 228

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG 180
           LTVKPQY FG+NGR A GDE AVP NA L I LE++SWKTVSD+ KDKKV+KKILKEG+G
Sbjct: 229 LTVKPQYGFGENGRTAAGDEGAVPPNATLEIMLELLSWKTVSDVMKDKKVMKKILKEGEG 288

Query: 181 YE---NQMMVQ---WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
           YE   +  +VQ     KL DGT+FVKKGH+EEP FEFKIDEEQVIDGLDR VKTMKKGEV
Sbjct: 289 YERPDDGTVVQVKLIGKLEDGTIFVKKGHEEEPPFEFKIDEEQVIDGLDRTVKTMKKGEV 348

Query: 235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKK 294
           ALVTI+PEYAFG   S+++LA VP N+T++YEVE++SF KEKESWDMNTQEKIEAAGKKK
Sbjct: 349 ALVTIQPEYAFGRSESQQDLATVPVNATVYYEVEMISFTKEKESWDMNTQEKIEAAGKKK 408

Query: 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE 354
           EEGN  FKAGKYERAS+RYE+A  +I YDSSF+DEEKQQ+KVLKI+C LNNAACKLKLK+
Sbjct: 409 EEGNAWFKAGKYERASRRYEKAAKFIEYDSSFTDEEKQQSKVLKISCKLNNAACKLKLKD 468

Query: 355 YKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGV 391
           YK+AEKLCSKVLELD                       ++DIK+ALEIDPDN       V
Sbjct: 469 YKEAEKLCSKVLELDGQNVKALYRRAQAYIQLVDLDLAEIDIKRALEIDPDNR-----DV 523

Query: 392 RMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEP 437
           ++E K+LK+KVREYNKK+ QFY NIFAK+NKLEQ  + S++ +Q P
Sbjct: 524 KLENKILKDKVREYNKKEAQFYSNIFAKMNKLEQ--TNSTVNRQNP 567

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329948|dbj|BAL14273.1| FK506-binding protein [Nicotiana tabacum]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/477 (70%), Positives = 383/477 (80%), Gaps = 38/477 (7%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENA+FTIPPELAYGESGSPPTIPPNA LQFDVELL W SVKDICKDGGIFKKIL E
Sbjct: 102 MKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWVSVKDICKDGGIFKKILAE 161

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G+KWENPKD DEV VKYE  LE+GT++ KSDGVEFTV DGYFC ALAKAVKTMKKGEKV 
Sbjct: 162 GEKWENPKDFDEVLVKYEALLENGTVVGKSDGVEFTVQDGYFCPALAKAVKTMKKGEKVQ 221

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG 180
           LTVKPQY FG+ G+PA+ D  AVPSNA L I LE+VSWK VS +T DKKV+KKILKEG+G
Sbjct: 222 LTVKPQYGFGEKGKPASSDGGAVPSNATLQINLELVSWKIVSSVTDDKKVVKKILKEGEG 281

Query: 181 YE--NQMMVQWF----KLHDGTVFVKKGHD---EEPLFEFKIDEEQVIDGLDRAVKTMKK 231
           YE  N+  V       KL DGTVF+KKGHD   E+ LFEFK DEEQVIDGLDRAV TMKK
Sbjct: 282 YEKPNEGAVVKLKLIGKLQDGTVFIKKGHDGENEDELFEFKTDEEQVIDGLDRAVMTMKK 341

Query: 232 GEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAG 291
           GEVAL+TI PEYAFGS  S+++LA++P NST+ YEVELVSF+K+KESWDMNT EKIEAAG
Sbjct: 342 GEVALLTIAPEYAFGSSESKQDLAVIPPNSTVHYEVELVSFVKDKESWDMNTPEKIEAAG 401

Query: 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLK 351
           KKKEEGN LFKAGKY RASKRYE+A  +I YD+SFS+EEK+Q+K LKI+CNLNNAACKLK
Sbjct: 402 KKKEEGNALFKAGKYTRASKRYEKAAKFIEYDTSFSEEEKKQSKALKISCNLNNAACKLK 461

Query: 352 LKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAG 388
           LK+YKQAEKLC+KVLEL+                       + DIKKALEIDP+N     
Sbjct: 462 LKDYKQAEKLCTKVLELESTNVKALYRRAQAYMNMADLDLAEFDIKKALEIDPNNR---- 517

Query: 389 WGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEPAPMVLIAR 445
             V++EYK LK+KV+E+NKKD +FYGN+FAK+NKLE A S+ S A +EP PM + ++
Sbjct: 518 -DVKLEYKALKDKVKEFNKKDAKFYGNMFAKLNKLETANSSKS-APKEPEPMSIDSK 572

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065421|ref|XP_002301809.1| predicted protein [Populus trichocarpa] gi|222843535|gb|EEE81082.1| predicted protein [Populus trichocarpa]

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/469 (69%), Positives = 382/469 (81%), Gaps = 35/469 (7%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENA+FTIP +LAYG SGSPPTIPPNA LQFDVELL W+S+KDICKDGGIFKKILVE
Sbjct: 107 MKKGENALFTIPADLAYGSSGSPPTIPPNATLQFDVELLSWSSIKDICKDGGIFKKILVE 166

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G+KWENPKDLDEV V+YE +LEDG++I++SDGVEFTV DG+FC ALA+AVKTMK GEKVL
Sbjct: 167 GEKWENPKDLDEVLVRYEAQLEDGSVIARSDGVEFTVKDGHFCPALARAVKTMKMGEKVL 226

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG 180
           LTVKPQY FG+ G+PA+GDE AVP NAN+ ITLE+V+WKTV+++T DKKV+KKILKEGDG
Sbjct: 227 LTVKPQYGFGEKGKPASGDESAVPPNANIQITLELVAWKTVTEVTDDKKVIKKILKEGDG 286

Query: 181 YE--NQMMVQWF----KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
           Y+  N+  V       KL DGTVF KKG D+  LFEFK DEEQVIDGLDRAV TMKKGE+
Sbjct: 287 YDRPNEGAVVKVKLIGKLQDGTVFFKKGQDDSELFEFKTDEEQVIDGLDRAVSTMKKGEL 346

Query: 235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKK 294
           AL+TI PEYAFGS  S++ELA+VP NST+ YE+ELVSF KEKESWDMNT EKIEAAGKKK
Sbjct: 347 ALLTIAPEYAFGSSESQQELAVVPPNSTVCYEIELVSFDKEKESWDMNTDEKIEAAGKKK 406

Query: 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE 354
           EEGNVLFKAGKY +ASKRYE+AV YI YDSSFS+EEK+QAK LK+ CNLNNAACKLKLK+
Sbjct: 407 EEGNVLFKAGKYAKASKRYEKAVKYIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKD 466

Query: 355 YKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGV 391
           YKQAEKLC+KVLEL+                       + DIKKALEIDPDN       V
Sbjct: 467 YKQAEKLCTKVLELESRNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPDNR-----DV 521

Query: 392 RMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEPAPM 440
           ++E+K LKEK++EYNKK+ +FYGN+FAK++K+   +S  + AK E  PM
Sbjct: 522 KLEHKTLKEKMKEYNKKEAKFYGNMFAKMSKVGSLESNKAEAK-EAEPM 569

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497288|ref|XP_002263566.2| PREDICTED: 70 kDa peptidyl-prolyl isomerase [Vitis vinifera] gi|296085741|emb|CBI29552.3| unnamed protein product [Vitis vinifera]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/467 (70%), Positives = 379/467 (81%), Gaps = 35/467 (7%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENA+FTIPPELAYGESGS  TIPPNA LQFDVELL WTSVKDICKDGGIFKKI+ E
Sbjct: 103 MKKGENAIFTIPPELAYGESGSSTTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTE 162

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G KWENPKDLDEVFVKYE RLEDGTL++KSDGVEFTV + YFC AL+KAVKTMKKGEKV+
Sbjct: 163 GDKWENPKDLDEVFVKYEARLEDGTLVAKSDGVEFTVKEDYFCPALSKAVKTMKKGEKVI 222

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG 180
           LTVKPQY FG+ G+PA+G+E AVP NA L ITLE+VSWKTV+++T DKKV+KKILKEG+G
Sbjct: 223 LTVKPQYGFGEKGKPASGEEGAVPPNATLEITLELVSWKTVTEVTDDKKVIKKILKEGEG 282

Query: 181 YE--NQMMVQWF----KLHDGTVFVKKGHDE-EPLFEFKIDEEQVIDGLDRAVKTMKKGE 233
           YE  N+  V       KL DGTVF+KKGH E E LFEFK D+EQVIDGLDRAV TMKKGE
Sbjct: 283 YERPNEGAVVKLKLIGKLQDGTVFLKKGHGEGEDLFEFKTDDEQVIDGLDRAVMTMKKGE 342

Query: 234 VALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKK 293
           VAL+TI  +YAFGS  S +ELA+VP NST++YEVEL SF+K+KESWDMNT+EKIEAAGKK
Sbjct: 343 VALLTIHSDYAFGSSESSQELAVVPPNSTVYYEVELESFVKDKESWDMNTEEKIEAAGKK 402

Query: 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK 353
           KEEGNVLFKAGKY RASKRYE+A  YI YDSSF +EEK+QAK LK+TCNLNNAACKLKLK
Sbjct: 403 KEEGNVLFKAGKYARASKRYEKAAKYIEYDSSFGEEEKKQAKTLKVTCNLNNAACKLKLK 462

Query: 354 EYKQAEKLCSKV-----------------------LELDKLDIKKALEIDPDNSLEAGWG 390
           +YK+AEKLC+KV                       L+L + DIKKALEIDPDN       
Sbjct: 463 DYKEAEKLCTKVLDIQSKNVKALYRRAQAYIHLADLDLAEFDIKKALEIDPDNR-----D 517

Query: 391 VRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEP 437
           V++EY+ LKEK++EYNKK+ +FYGN+FA++NKLE  ++  +  + EP
Sbjct: 518 VKLEYRTLKEKMKEYNKKEAKFYGNMFARMNKLEALETNKATKEAEP 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498811|ref|XP_004160641.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP65-like [Cucumis sativus]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/475 (69%), Positives = 378/475 (79%), Gaps = 40/475 (8%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENAVFTIPPELAYGESGSPPTIPPNA LQFDVELL W SVKDIC+DGGI KKILV+
Sbjct: 106 MKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGILKKILVK 165

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G  WE PKDLDEV V+YE RLE+GTLISKSDGVEFTV  GYFC ALA AVKTMKKGEK L
Sbjct: 166 GDGWEKPKDLDEVLVRYEARLENGTLISKSDGVEFTVEKGYFCPALATAVKTMKKGEKAL 225

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG 180
           LTV+PQY FG++GRP +G+E AVP N  L ITL++ S KTV++ITKDKKVLKK  KEG+G
Sbjct: 226 LTVRPQYGFGESGRPVSGEEGAVPPNGTLQITLQLDSLKTVTEITKDKKVLKKTQKEGEG 285

Query: 181 YE--NQMMVQWFKLH----DGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
           YE  N+  V   KL     DGT+F KKG DE   FEFKIDEEQVI+GLD AV+ MKKGE+
Sbjct: 286 YEQPNEGAVVQVKLTGKLGDGTIFTKKGDDER-TFEFKIDEEQVIEGLDLAVRKMKKGEI 344

Query: 235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMN-TQEKIEAAGKK 293
           ALVTI P+YAFGS  S ++LA+VPANST++YEVELVSF+KEKESWD+N  +EKIEAAGKK
Sbjct: 345 ALVTIHPQYAFGSSDSSQDLAVVPANSTVYYEVELVSFVKEKESWDLNKAEEKIEAAGKK 404

Query: 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK 353
           KEEGNVLFKAGKYERAS+RYE+AV YI YD+SFSDEEKQQ+K LKI+CNLNNAACKLK+K
Sbjct: 405 KEEGNVLFKAGKYERASRRYEKAVRYIEYDTSFSDEEKQQSKALKISCNLNNAACKLKVK 464

Query: 354 EYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWG 390
           +YKQAEKLC+KVLELD                       + DIKKALEIDPDN       
Sbjct: 465 DYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAERDIKKALEIDPDNR-----D 519

Query: 391 VRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEPAPMVLIAR 445
           V++EY+ LK+KVREYNK+D QFYGNIFAK+NKLE     +S  KQE  PM + ++
Sbjct: 520 VKIEYRQLKDKVREYNKRDAQFYGNIFAKMNKLEH----NSGGKQEAVPMTIDSK 570

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459832|ref|XP_004147650.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP65-like [Cucumis sativus]

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/475 (69%), Positives = 378/475 (79%), Gaps = 40/475 (8%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENAVFTIPPELAYGESGSPPTIPPNA LQFDVELL W SVKDIC+DGGI KKILV+
Sbjct: 106 MKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGILKKILVK 165

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G  WE PKDLDEV V+YE RLE+GTLISKSDGVEFTV  GYFC ALA AVKTMKKGEK L
Sbjct: 166 GDGWEKPKDLDEVLVRYEARLENGTLISKSDGVEFTVEKGYFCPALATAVKTMKKGEKAL 225

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG 180
           LTV+PQY FG++GRP +G+E AVP N  L ITL++ S KTV++ITKDKKVLKK  KEG+G
Sbjct: 226 LTVRPQYGFGESGRPVSGEEGAVPPNGTLQITLQLDSLKTVTEITKDKKVLKKTQKEGEG 285

Query: 181 YE--NQMMVQWFKLH----DGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
           YE  N+  V   KL     DGT+F KKG DE   FEFKIDEEQVI+GLD AV+ MKKGE+
Sbjct: 286 YEQPNEGAVVQVKLTGKLGDGTIFTKKGDDER-TFEFKIDEEQVIEGLDLAVRKMKKGEI 344

Query: 235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMN-TQEKIEAAGKK 293
           ALVTI P+YAFGS  S ++LA+VPANST++YEVELVSF+KEKESWD+N  +EKIEAAGKK
Sbjct: 345 ALVTIHPQYAFGSSDSSQDLAVVPANSTVYYEVELVSFVKEKESWDLNKAEEKIEAAGKK 404

Query: 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK 353
           KEEGNVLFKAGKYERAS+RYE+AV YI YD+SFSDEEKQQ+K LKI+CNLNNAACKLK+K
Sbjct: 405 KEEGNVLFKAGKYERASRRYEKAVRYIEYDTSFSDEEKQQSKALKISCNLNNAACKLKVK 464

Query: 354 EYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWG 390
           +YKQAEKLC+KVLELD                       + DIKKALEIDPDN       
Sbjct: 465 DYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAERDIKKALEIDPDNR-----D 519

Query: 391 VRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEPAPMVLIAR 445
           V++EY+ L++KVREYNK+D QFYGNIFAK+NKLE     +S  KQE  PM + ++
Sbjct: 520 VKIEYRQLEDKVREYNKRDAQFYGNIFAKMNKLEH----NSGGKQEAVPMTIDSK 570

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255589766|ref|XP_002535081.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223524081|gb|EEF27302.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 324/465 (69%), Positives = 379/465 (81%), Gaps = 35/465 (7%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENA+FTIPPELAYG SGSPPTIPPNA LQFDVELL WTSVKDICKDGGIFKKILVE
Sbjct: 105 MKKGENAIFTIPPELAYGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILVE 164

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G+KWENPKDLDEV V +E +LEDGT+++KSDGVEF V +G+FC ALAKAVKTMKK EKVL
Sbjct: 165 GEKWENPKDLDEVLVNFEAQLEDGTVVAKSDGVEFAVKEGHFCPALAKAVKTMKKKEKVL 224

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG 180
           LTVKPQY FG+ G+PA+  E AVP NA L ITLE+VSWKTVS++T DKKV+KKILKEG+G
Sbjct: 225 LTVKPQYGFGEKGKPASNGEGAVPPNATLQITLELVSWKTVSEVTDDKKVMKKILKEGEG 284

Query: 181 YE---NQMMVQW---FKLHDGTVFVKKGHD-EEPLFEFKIDEEQVIDGLDRAVKTMKKGE 233
           YE   +  +V+     KL DGTVF+KKGHD EE LFEF  DEEQVI+GLDRAV  MKKGE
Sbjct: 285 YERPNDGSLVKLKLIGKLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGE 344

Query: 234 VALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKK 293
           VALVTI PEYAFG+  S++ELA++P NST++YEVELVSF+KEKESWDMNTQEKIEAAGKK
Sbjct: 345 VALVTIAPEYAFGASESKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKK 404

Query: 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK 353
           KEEGN+LFKAGKY RASKRYE+AV +I YDSSFS+EEK+QAK LK+ CNLNNAACKL+LK
Sbjct: 405 KEEGNILFKAGKYARASKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLK 464

Query: 354 EYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWG 390
           EYK+AEKLC+KVL+L+                       + DIKKALEI+PDN       
Sbjct: 465 EYKEAEKLCTKVLDLESRNVKALYRRAQAYIQLADLDLAEFDIKKALEIEPDNR-----D 519

Query: 391 VRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQ 435
           V++EY+ LK+K+RE NKK+ +FYGN+FAK+NKL    S +S + +
Sbjct: 520 VKLEYRTLKDKMRELNKKEAKFYGNMFAKMNKLGPLDSNNSKSNE 564

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	469
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.795	0.645	0.677	1.5e-149
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.795	0.546	0.643	3e-144
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.933	0.755	0.625	1.7e-139
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.795	0.663	0.685	3.7e-135
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.797	0.639	0.658	3.8e-133
UNIPROTKB|Q657L6	422	P0468H06.14-3 "Peptidyl-prolyl	0.579	0.644	0.449	5.3e-56
UNIPROTKB|A8J0I6	569	FKB62 "Peptidyl-prolyl cis-tra	0.599	0.493	0.38	1.8e-48
UNIPROTKB|Q02790	459	FKBP4 "Peptidyl-prolyl cis-tra	0.663	0.677	0.365	2.9e-48
UNIPROTKB|F1MU79	459	FKBP4 "Peptidyl-prolyl cis-tra	0.663	0.677	0.356	6e-48
UNIPROTKB|Q9TRY0	459	FKBP4 "Peptidyl-prolyl cis-tra	0.663	0.677	0.356	7.7e-48

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 1312 (466.9 bits), Expect = 1.5e-149, Sum P(2) = 1.5e-149
 Identities = 260/384 (67%), Positives = 304/384 (79%)

Query:     1 MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
             MKKGENA+FTIPPELAYGE+GSPPTIPPNA LQFDVEL+ W SVKDIC DGG+ KKI+VE
Sbjct:   112 MKKGENAIFTIPPELAYGETGSPPTIPPNATLQFDVELIAWRSVKDICGDGGVSKKIIVE 171

Query:    61 GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
             G+KWE PKDLDEV+VKYE RLEDGT++ KSDGVEFTV +G+FC AL+KAVKTMK+GEKVL
Sbjct:   172 GEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGVEFTVKEGHFCPALSKAVKTMKRGEKVL 231

Query:   121 LTVKPQYAFGKNGRPAT-GDEDAVPSNANLHITLEMVSWKTVSXXXXXXXXXXXXXXEGD 179
             LTVKPQY FG+ GRPA+ G + A+P NA L I LE+VSWKTV               EG+
Sbjct:   232 LTVKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTVVEVTDDRKVIKKILKEGE 291

Query:   180 GYE--NQMMVQWFKL----HDGT-VFVKKGH--DEEPLFEFKIDEEQVIDGLDRAVKTMK 230
             GYE  N+  +   KL     DGT VFVKKGH  DEEP FEFKIDEEQVI+GL++AV  MK
Sbjct:   292 GYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEP-FEFKIDEEQVIEGLEKAVMGMK 350

Query:   231 KGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQXXXXXX 290
             KGEVAL+TI PEYAFGS  S++ELA++P NST++YEVELVSFIKEKESWDMNTQ      
Sbjct:   351 KGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIKEKESWDMNTQERIEAA 410

Query:   291 XXXXXXXNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKL 350
                    NVLFKAGKY RASKRYE+ V YI YDS+F +EEK+++K LKI CNLN+AACKL
Sbjct:   411 GKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDAACKL 470

Query:   351 KLKEYKQAEKLCSKVLELDKLDIK 374
             KLK+YK+A KL +KVLE+D  ++K
Sbjct:   471 KLKDYKEAAKLSTKVLEMDSRNVK 494

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1275 (453.9 bits), Expect = 3.0e-144, Sum P(2) = 3.0e-144
 Identities = 246/382 (64%), Positives = 296/382 (77%)

Query:     1 MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
             MKKGENA+FTIPPELAYGE GSPP IPPNA LQFDVEL+ W SVKDICKDGGI KK+L E
Sbjct:   160 MKKGENAIFTIPPELAYGEDGSPPVIPPNATLQFDVELISWESVKDICKDGGILKKVLAE 219

Query:    61 GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
             G KWENP+D DEVFVKYEVRLEDGT++++SDGVEFTV DG+FC A++KAVKTMKK EK L
Sbjct:   220 GTKWENPRDRDEVFVKYEVRLEDGTVVAESDGVEFTVKDGHFCPAISKAVKTMKKNEKAL 279

Query:   121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXXXXXXXXXXXXXXEGDG 180
             LTVKPQY FG+ GRPA  DE A+P NA LHI LE+VSWK V+              EG+G
Sbjct:   280 LTVKPQYGFGEQGRPAARDEAAIPPNATLHINLELVSWKAVTEIGNDKKILKKILHEGEG 339

Query:   181 YENQ-----MMVQWF-KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
             YE       + V+   KL DGT+FV +GHD +  FEFK DE+QV++GLD+AV +MKKGEV
Sbjct:   340 YERPSDCTLVRVKLIGKLEDGTIFVTRGHDGDEPFEFKTDEDQVVEGLDKAVLSMKKGEV 399

Query:   235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDM--NTQXXXXXXXX 292
             ALVTI PEYAFGS  + ++L++VP NST++YEVELVSF KEKESWDM  NT+        
Sbjct:   400 ALVTIPPEYAFGSDETRQDLSVVPPNSTVYYEVELVSFDKEKESWDMKENTEKIEAAAKK 459

Query:   293 XXXXXNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL 352
                  N  FK  KY RASKRY +A+N+I YDSSFS+EEKQ +K LK++C LNNAACKLKL
Sbjct:   460 KDEG-NAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSKPLKVSCKLNNAACKLKL 518

Query:   353 KEYKQAEKLCSKVLELDKLDIK 374
             K+YK+A++LC++VLELD +++K
Sbjct:   519 KDYKEAKELCTEVLELDSMNVK 540

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1365 (485.6 bits), Expect = 1.7e-139, P = 1.7e-139
 Identities = 281/449 (62%), Positives = 328/449 (73%)

Query:     1 MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
             MKKGENAVFTIPP+LAYGESGSPPTIP +A LQFDVELL WTSVKDIC+DGGIFKKIL E
Sbjct:   111 MKKGENAVFTIPPDLAYGESGSPPTIPASATLQFDVELLSWTSVKDICQDGGIFKKILKE 170

Query:    61 GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
             G+KWENPKDLDEVFVKYE RLEDGT+ISKS+G EFTV DG+FC ALAKAVKTMKK EKVL
Sbjct:   171 GEKWENPKDLDEVFVKYEARLEDGTVISKSEGAEFTVKDGFFCPALAKAVKTMKKAEKVL 230

Query:   121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXXXXXXXXXXXXXXEGDG 180
             LTVKPQY FG+NGRPA G+E AVP NA L + LE+VSWKTV+              EG G
Sbjct:   231 LTVKPQYGFGENGRPAAGEEGAVPPNATLLVNLELVSWKTVTEIGDDKKILKKVLTEGTG 290

Query:   181 YE--NQMMVQWFK----LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
             YE  N+  V   K    L DGT+F KKGHDE   FEFK DEE+VIDG+DRAV  MK GEV
Sbjct:   291 YERPNEGAVVKVKITGKLQDGTIFTKKGHDEPEPFEFKTDEEEVIDGIDRAVLNMKNGEV 350

Query:   235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQXXXXXXXXXX 294
             ALVTI PEYAFGS  S+++LA+VP NST+ YEVELVSF+K+KESWD+N            
Sbjct:   351 ALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVSFVKDKESWDLNNTEKIETAGAKK 410

Query:   295 XXXNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE 354
                N LFK GKY RASKRYE+A  +I YDSSFS++EK+Q+K LK+TCNLNNAACKLKLK+
Sbjct:   411 EEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQLKVTCNLNNAACKLKLKD 470

Query:   355 YKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQF-Y 413
             YKQAEKLC+KVLELD  ++K AL       ++       E  + K    + + +DV+  Y
Sbjct:   471 YKQAEKLCTKVLELDSQNVK-ALYRRAQAYMQLADLELAEVDIKKALEIDPDNRDVKLTY 529

Query:   414 GNIFAKINKLEQ--AKSASSM-AKQEPAP 439
              N+  K+ +  +  AK  S+M AK    P
Sbjct:   530 KNLKEKVKEYNKKDAKFYSNMFAKMTKQP 558

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
 Identities = 262/382 (68%), Positives = 301/382 (78%)

Query:     1 MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
             MKKGENAVFTIP ELAYGESGSPPTIP NA LQFDVELL W SVKDICKDGG+FKKIL  
Sbjct:   104 MKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAV 163

Query:    61 GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
             G+KWENPKDLDEV VK+E +LEDGT++ KSDGVEFTV DG+FC AL KAVKTMKKGEKVL
Sbjct:   164 GEKWENPKDLDEVLVKFEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVL 223

Query:   121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXXXXXXXXXXXXXXEGDG 180
             LTVKPQY FG+ G+PA+  E AVP NA L I LE+VSWKTVS              EGDG
Sbjct:   224 LTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDG 283

Query:   181 YE--NQ---MMVQWF-KLHDGTVFVKKGH--DEEPLFEFKIDEEQVIDGLDRAVKTMKKG 232
             YE  N+   + V+   KL DGTVF+KKGH  +EEP FEFK DEEQV+DGLDRAV  MKKG
Sbjct:   284 YERPNEGAVVKVKLIGKLQDGTVFLKKGHGENEEP-FEFKTDEEQVVDGLDRAVMKMKKG 342

Query:   233 EVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQXXXXXXXX 292
             EVALVTI+PEYAFGS  S++ELA+VP NST+ YEV+L++F KE+ESWDMNT+        
Sbjct:   343 EVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASK 402

Query:   293 XXXXXNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL 352
                  N  FK GKY  ASKRYE+AV +I YD+SFS+EEK+QAK LK+ CNLN+AACKLKL
Sbjct:   403 KKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKL 462

Query:   353 KEYKQAEKLCSKVLELDKLDIK 374
             K+YKQAEKLC+KVLEL+  ++K
Sbjct:   463 KDYKQAEKLCTKVLELESTNVK 484

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
 Identities = 251/381 (65%), Positives = 298/381 (78%)

Query:     1 MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
             MKKGE AVFT+PPELAYGE+GSPP IPPNA L+FDVELL W SVKDICKDGGIFKK+L E
Sbjct:   115 MKKGEQAVFTVPPELAYGEAGSPPAIPPNATLRFDVELLSWASVKDICKDGGIFKKVLAE 174

Query:    61 GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
             G KWENPKDLDEV VKYE RLEDGT++SKSDGVEF V DGYFC AL+KAVKTMKKGEKVL
Sbjct:   175 GHKWENPKDLDEVLVKYEARLEDGTVVSKSDGVEFAVKDGYFCPALSKAVKTMKKGEKVL 234

Query:   121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXXXXXXXXXXXXXXEGDG 180
             LTVKPQY FG+ G+PA+G E AVP NA L++ LE++SWKTV+              EG+G
Sbjct:   235 LTVKPQYGFGEQGKPASGAEAAVPPNATLYVDLELLSWKTVTLIGDDKRILKKVLKEGEG 294

Query:   181 YENQ-----MMVQWF-KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
             YE       + V++  KL DGTVF KKGHD +  FEF+ DEEQVI+GLDR V TMKKGEV
Sbjct:   295 YERPNDGAVVRVRFIGKLEDGTVFSKKGHDGDEPFEFRTDEEQVIEGLDRTVVTMKKGEV 354

Query:   235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQXXXXXXXXXX 294
             ALV + P++AFGS  ++++LA+VPANST++YEVELVSF KEKESWD+             
Sbjct:   355 ALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVELVSFEKEKESWDLKDNAEKIEAAAKK 414

Query:   295 XXX-NVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK 353
                 NV FK GKY +ASKRYE+A  YI YDSSF+D+EK+Q+K LK++C LNNAACKLKLK
Sbjct:   415 KDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKALKVSCKLNNAACKLKLK 474

Query:   354 EYKQAEKLCSKVLELDKLDIK 374
             EY++AEKLC+KVLEL+  ++K
Sbjct:   475 EYREAEKLCTKVLELESTNVK 495

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q657L6 P0468H06.14-3 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 128/285 (44%), Positives = 184/285 (64%)

Query:     1 MKKGENAVFTIPPELAYGESGSP---PT-IPPNAMLQFDVELLGWTSVKDICKDGGIFKK 56
             M+ GE A+FTIP  L   ++GSP   P+ IPPN  L+F++EL+   ++ DI KD GI KK
Sbjct:   120 MQPGEKAIFTIPSALTMTKAGSPASIPSNIPPNQTLRFEIELIAMFTIIDIFKDEGILKK 179

Query:    57 ILVEGKK-WENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKK 115
             I+   +   +     D VFVKY+  L DGT +SKS+GVEF++ DG+FC A A AV TMK+
Sbjct:   180 IVKNAEPDRKQSHSSDFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKE 239

Query:   116 GEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW--KTVSXXXXXXXXXXX 173
             GE+ +L VKP+YAFG+ GRP+ G+E AVP +A L++ L  V W  +              
Sbjct:   240 GEEAVLIVKPKYAFGEQGRPSQGEEAAVPPDATLYVHLLFVCWIRRIGEDQAIAKKTLRI 299

Query:   174 XXXEGDGYENQMMVQ---WFKLHDGTVFVKKGH-DEEPLFEFKIDEEQVIDGLDRAVKTM 229
                +    ++Q +V+     KL DGTVF ++G+ D+EP FEF +DE QVIDGLD +V TM
Sbjct:   300 GNSQRIHTQSQAVVKVRLLGKLQDGTVFDRRGYGDDEP-FEFVVDEGQVIDGLDESVMTM 358

Query:   230 KKGEVALVTIEPEYAFGSCSSEK-ELAIVPANSTLFYEVELVSFI 273
             ++GEVA  TI P++AF +  S++ + A VP N+T+ Y++EL+S +
Sbjct:   359 EEGEVAEFTIPPQHAFDAVGSDQHQFAFVPRNATVVYKIELLSVV 403

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|A8J0I6 FKB62 "Peptidyl-prolyl cis-trans isomerase, FKBP-type" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 440 (159.9 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 114/300 (38%), Positives = 153/300 (51%)

Query:    88 SKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNA 147
             + ++ V FTV +G    A+  AVKTMK+GE+V L VKP+Y FG  G      E  VP  A
Sbjct:   169 ASAEAVTFTVSEGLLVPAVRVAVKTMKRGERVQLKVKPEYGFGAAG----SSEYGVPPGA 224

Query:   148 NLHITLEMVSWKTVSXXXXXXXXXXXXXXEGDG-YE--NQ-----MMVQWFKLHDGTVFV 199
             +L I L ++ W  V               E D  Y   N+     + V    L DG VF+
Sbjct:   225 DLEIELTLLGWNNVEYCNNENTVVKKTLVECDNEYRRPNEGASVTLRVTGKVLPDGPVFM 284

Query:   200 KKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTI-EPEYAFG----SCSSEKEL 254
             K G   E    F  +EEQV +GL+ AV  MKKGE A+VT+ +P Y +G    + S E   
Sbjct:   285 KHGEGSE--LRFVTEEEQVPEGLELAVMKMKKGETAVVTVNDPAYGYGDKPRTVSVEGSE 342

Query:   255 AIVPANSTLFYEVELVSFIKEKESWDMNTQXXXXXXXXXXXXXNVLFKAGKYERASKRYE 314
               VPA S L +EV+LV F   KE+W+M+               N  FK+GK  RA   ++
Sbjct:   343 VEVPAGSRLQFEVDLVDFTNAKETWEMSDIEKAHAAKQRKDKGNAFFKSGKLARAQSCWD 402

Query:   315 QAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIK 374
             +AV  + YD SF DE K   K +K +C LN AA  LK   +K A K C+ VL++D   +K
Sbjct:   403 RAVAAVSYDKSFPDEAKAIGKEVKRSCWLNLAALDLKRAHWKDAVKHCTSVLDIDPTSVK 462

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4" [Homo sapiens (taxid:9606)]

 Score = 455 (165.2 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 121/331 (36%), Positives = 174/331 (52%)

Query:    49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCA 104
             +D G+ K I  EG   E P   D VFV Y   L DGT    S    D   F +G G    
Sbjct:    29 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query:   105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXX 164
             A   A+ TMK GE   +T KP+YA+G  G P       +P NA L   +E+  +K     
Sbjct:    89 AWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-----IPPNATLVFEVELFEFKGEDLT 143

Query:   165 XXXXXXXXXXX-XEGDGYE--NQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVID- 220
                           G+GY   N+  +    L +G  +  K  D+  L  F+I E + +D 
Sbjct:   144 EEEDGGIIRRIQTRGEGYAKPNEGAIVEVAL-EG-YYKDKLFDQREL-RFEIGEGENLDL 200

Query:   221 --GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKES 278
               GL+RA++ M+KGE ++V ++P YAFGS   EK    +P N+ L YE+ L SF K KES
Sbjct:   201 PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQ--IPPNAELKYELHLKSFEKAKES 258

Query:   279 WDMNTQXXXXXXXXXXXXXNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLK 338
             W+MN++              V FK GKY++A  +Y++ V+++ Y+SSFS+EE Q+A+ L+
Sbjct:   259 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 318

Query:   339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369
             +  +LN A C LKL+ +  A + C+K LELD
Sbjct:   319 LASHLNLAMCHLKLQAFSAAIESCNKALELD 349

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0032767 "copper-dependent protein binding" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0048156 "tau protein binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA;IBA

GO:0005528 "FK506 binding" evidence=IBA;TAS

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005622 "intracellular" evidence=NAS

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0044295 "axonal growth cone" evidence=ISS

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=ISS

GO:0010977 "negative regulation of neuron projection development" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0006457 "protein folding" evidence=TAS

GO:0030674 "protein binding, bridging" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA;IBA

UNIPROTKB|F1MU79 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" [Bos taurus (taxid:9913)]

 Score = 445 (161.7 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
 Identities = 118/331 (35%), Positives = 173/331 (52%)

Query:    49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCA 104
             +D G+ K I  EG   E P   D VFV Y   L DGT    S    D   F +G G    
Sbjct:    29 QDEGVLKVIKREGTGMETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDRFSFDLGKGEVIK 88

Query:   105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXX 164
             A   AV TMK GE   +T KP+YA+G  G P       +P NA L   +E+  +K     
Sbjct:    89 AWDIAVATMKVGEVCHITCKPEYAYGLAGSPPK-----IPPNATLVFEVELFEFKGEDLT 143

Query:   165 XXXXXXXXXXX-XEGDGYE--NQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVID- 220
                           G+GY   N+  +    L +G  F  +  D   L  F++ E + +D 
Sbjct:   144 EEEDGGIIRRIRTRGEGYAKPNEGALVEVAL-EG-YFKDQVFDRREL-RFEVGEGESMDL 200

Query:   221 --GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKES 278
               GL++A++ M+KGE ++V ++P YAFGS   EK    +P N+ L YE+ L SF K KES
Sbjct:   201 PCGLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEKFQ--IPPNAELKYEIHLKSFEKAKES 258

Query:   279 WDMNTQXXXXXXXXXXXXXNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLK 338
             W+M+++              V FK GKY++A  +Y++ V+++ Y+SSFSDE+ ++A+ L+
Sbjct:   259 WEMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAEKAQALR 318

Query:   339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369
             +  +LN A C LKL+ +  A + C+K LELD
Sbjct:   319 LASHLNLAMCHLKLQAFSAAIENCNKALELD 349

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q9TRY0 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4" [Bos taurus (taxid:9913)]

 Score = 444 (161.4 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 118/331 (35%), Positives = 173/331 (52%)

Query:    49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCA 104
             +D G+ K I  EG   E P   D VFV Y   L DGT    S    D   F +G G    
Sbjct:    29 QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDRFSFDLGKGEVIK 88

Query:   105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXX 164
             A   AV TMK GE   +T KP+YA+G  G P       +P NA L   +E+  +K     
Sbjct:    89 AWDIAVATMKVGEVCHITCKPEYAYGLAGSPPK-----IPPNATLVFEVELFEFKGEDLT 143

Query:   165 XXXXXXXXXXX-XEGDGYE--NQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVID- 220
                           G+GY   N+  +    L +G  F  +  D   L  F++ E + +D 
Sbjct:   144 EEEDGGIIRRIRTRGEGYAKPNEGALVEVAL-EG-YFKDQVFDRREL-RFEVGEGESMDL 200

Query:   221 --GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKES 278
               GL++A++ M+KGE ++V ++P YAFGS   EK    +P N+ L YE+ L SF K KES
Sbjct:   201 PCGLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEKFQ--IPPNAELKYEIHLKSFEKAKES 258

Query:   279 WDMNTQXXXXXXXXXXXXXNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLK 338
             W+M+++              V FK GKY++A  +Y++ V+++ Y+SSFSDE+ ++A+ L+
Sbjct:   259 WEMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAEKAQALR 318

Query:   339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369
             +  +LN A C LKL+ +  A + C+K LELD
Sbjct:   319 LASHLNLAMCHLKLQAFSAAIENCNKALELD 349

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=ISS

GO:0044295 "axonal growth cone" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0010977 "negative regulation of neuron projection development" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9TRY0	FKBP4_BOVIN	5, ., 2, ., 1, ., 8	0.3293	0.8017	0.8191	yes	no
Q9FJL3	FKB65_ARATH	5, ., 2, ., 1, ., 8	0.6887	0.8827	0.7162	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.963
4th Layer	5.2.1.8	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	469
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	7e-20
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	7e-17
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	2e-12
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	9e-12
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	6e-10
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	3e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-06
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	1e-05
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	1e-05
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	3e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-05
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	5e-05
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	6e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.001

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 83.8 bits (208), Expect = 7e-20
 Identities = 34/80 (42%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 191 KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS 250
           KL DGTVF       +P FEF +   QVI G D  +  MK GE   +TI PE A+G    
Sbjct: 18  KLEDGTVFDSSKDRGKP-FEFTLGSGQVIPGWDEGLLGMKVGEKRKLTIPPELAYG--EE 74

Query: 251 EKELAIVPANSTLFYEVELV 270
                ++P N+TL +EVEL+
Sbjct: 75  GLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 75.4 bits (186), Expect = 7e-17
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 63  KWENPKDLDEVFVKYEVRLEDGTLISKSDG----VEFTVGDGYFCAALAKAVKTMKKGEK 118
             E  K  D V V Y  +LEDGT+   S       EFT+G G       + +  MK GEK
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 119 VLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMV 156
             LT+ P+ A+G+ G         +P NA L   +E++
Sbjct: 61  RKLTIPPELAYGEEGLA----GGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 25/40 (62%), Positives = 27/40 (67%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLG 40
           MK G     TIPPELAYGE G P  IPPN+ L F+VELL 
Sbjct: 164 MKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 60.7 bits (148), Expect = 9e-12
 Identities = 26/40 (65%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 1  MKKGENAVFTIPPELAYGESGS-PPTIPPNAMLQFDVELL 39
          MK GE    TIPPELAYGE G     IPPNA L F+VELL
Sbjct: 55 MKVGEKRKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 169 KVLKKILKEGDGYE----NQMMVQWF-KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLD 223
            +  K+LK GDG      + + V +   L DGTVF    +D     EF +    VI G D
Sbjct: 102 GLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVF-DSSYDRGQPAEFPLG--GVIPGWD 158

Query: 224 RAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
             ++ MK G    +TI PE A+G         ++P NSTL +EVEL+  
Sbjct: 159 EGLQGMKVGGKRKLTIPPELAYG---ERGVPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 51  GGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDG----VEFTVGDGYFCAAL 106
            G+  K+L  G     PK  D V V Y   L DGT+   S       EF +G        
Sbjct: 101 SGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGW 157

Query: 107 AKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVS 157
            + ++ MK G K  LT+ P+ A+G+ G P       +P N+ L   +E++ 
Sbjct: 158 DEGLQGMKVGGKRKLTIPPELAYGERGVPG-----VIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 16/84 (19%)

Query: 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAA 347
           + A   K  GN LFK G Y+ A + YE+A+            +   A+        N A 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALEL----------DPDNAEAY-----YNLAL 45

Query: 348 CKLKLKE-YKQAEKLCSKVLELDK 370
             LKL + Y++A +   K LELD 
Sbjct: 46  AYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 71  DEVFVKYEVRLEDGTLISKSDG----VEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQ 126
           D V + Y +++EDG ++  +D     + F VG G     L +A+   + GE+  + + P+
Sbjct: 7   DVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPE 66

Query: 127 YAFG 130
            AFG
Sbjct: 67  DAFG 70

Length = 174

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
           +KKG      IPPELAYG++G  P IP N+ L FDVELL
Sbjct: 209 IKKGGKIKLVIPPELAYGKAGV-PGIPANSTLVFDVELL 246

Length = 269

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 191 KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS 250
           K+ DG V      +  PL  F +   Q+I GL+ A+   + GE   V I PE AFG    
Sbjct: 16  KVEDGEVVDTTDENYGPLT-FIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGE-YD 73

Query: 251 EKELAIVPAN 260
              +  VP +
Sbjct: 74  PDLVQRVPRD 83

Length = 174

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 15/81 (18%)

Query: 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK 353
              GN+ +K G Y+ A + YE+A+     D   +D               N AA   KL 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALEL---DPDNAD------------AYYNLAAAYYKLG 48

Query: 354 EYKQAEKLCSKVLELDKLDIK 374
           +Y++A +   K LELD  + K
Sbjct: 49  KYEEALEDYEKALELDPDNAK 69

Length = 100

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
           M  G     TIP ELAYGE G+  +IPP + L F+VELL
Sbjct: 165 MPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 13/130 (10%)

Query: 170 VLKKILKEGDG---YENQMMVQWFK--LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDR 224
           +L K+ KEG G    ++  +V  +K  L DG  F       EPL  F++D   VI G   
Sbjct: 148 LLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPL-SFRLD--GVIPGWTE 204

Query: 225 AVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQ 284
            +K +KKG    + I PE A+G    +  +  +PANSTL ++VEL+  +K     D   +
Sbjct: 205 GLKNIKKGGKIKLVIPPELAYG----KAGVPGIPANSTLVFDVELLD-VKPAPKADAKPE 259

Query: 285 EKIEAAGKKK 294
              +AA   K
Sbjct: 260 ADAKAADSAK 269

Length = 269

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 297 GNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYK 356
             VL + G Y+ A +  E+A+          ++  + A+ L      N A   L L +Y 
Sbjct: 12  ALVLRRLGDYDEALELLEKALELA---RELGEDHPETARAL-----NNLARLYLALGDYD 63

Query: 357 QAEKLCSKVLELDK 370
           +A +   K L L +
Sbjct: 64  EALEYLEKALALRE 77

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	469
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.96
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.95
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.93
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.93
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.9
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.89
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.88
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.85
KOG4234	271	consensus TPR repeat-containing protein [General f	99.8
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.8
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.79
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.79
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.72
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.71
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.7
KOG0553	304	consensus TPR repeat-containing protein [General f	99.7
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.67
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.64
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.61
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.59
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.55
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.53
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.49
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.4
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.39
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.38
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.38
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.36
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.35
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.27
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.07
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.07
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.0
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.99
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.96
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	98.94
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.93
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.88
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.83
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.82
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.77
PRK01490	435	tig trigger factor; Provisional	98.74
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.55
PRK15359	144	type III secretion system chaperone protein SscB;	98.55
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.49
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.42
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.36
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.28
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.23
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.21
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.19
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.14
PF13371	73	TPR_9: Tetratricopeptide repeat	98.13
KOG4555	175	consensus TPR repeat-containing protein [Function	98.1
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.09
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.08
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.07
PRK11189	296	lipoprotein NlpI; Provisional	97.92
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.91
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.9
PRK15359	144	type III secretion system chaperone protein SscB;	97.89
PRK01490	435	tig trigger factor; Provisional	97.86
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.84
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.83
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.79
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.74
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.74
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.69
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.63
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.58
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.57
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.53
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.52
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.52
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.49
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.48
KOG1126	638	consensus DNA-binding cell division cycle control	97.47
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.41
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.36
PRK12370	553	invasion protein regulator; Provisional	97.34
PRK11189	296	lipoprotein NlpI; Provisional	97.27
KOG1310	758	consensus WD40 repeat protein [General function pr	97.27
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.24
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.24
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.22
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.21
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.21
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.2
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	97.19
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.17
PRK15331	165	chaperone protein SicA; Provisional	97.16
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.16
KOG2003	840	consensus TPR repeat-containing protein [General f	97.14
PF13512	142	TPR_18: Tetratricopeptide repeat	97.07
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.05
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.05
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.03
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.02
KOG0553	304	consensus TPR repeat-containing protein [General f	96.99
PLN02789	320	farnesyltranstransferase	96.96
PRK10803	263	tol-pal system protein YbgF; Provisional	96.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.93
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.92
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.87
KOG1129	478	consensus TPR repeat-containing protein [General f	96.86
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.85
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.81
KOG1125	579	consensus TPR repeat-containing protein [General f	96.78
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.76
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.74
KOG1126	638	consensus DNA-binding cell division cycle control	96.73
PRK12370	553	invasion protein regulator; Provisional	96.73
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.66
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.66
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.65
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.64
KOG4234	271	consensus TPR repeat-containing protein [General f	96.64
KOG0547	606	consensus Translocase of outer mitochondrial membr	96.62
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.6
PF13431	34	TPR_17: Tetratricopeptide repeat	96.54
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.53
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.53
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.53
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.47
KOG2003	840	consensus TPR repeat-containing protein [General f	96.46
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.43
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.41
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	96.4
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.4
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	96.38
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.38
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.36
KOG2076	895	consensus RNA polymerase III transcription factor	96.36
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.3
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.27
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.25
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.24
PLN02789	320	farnesyltranstransferase	96.23
KOG2076	895	consensus RNA polymerase III transcription factor	96.15
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.13
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.13
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	96.04
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.0
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.98
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.97
PRK14574	822	hmsH outer membrane protein; Provisional	95.97
PF13428	44	TPR_14: Tetratricopeptide repeat	95.9
PRK14720	906	transcript cleavage factor/unknown domain fusion p	95.85
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.83
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.81
PRK10803	263	tol-pal system protein YbgF; Provisional	95.79
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.78
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.59
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.57
KOG1125	579	consensus TPR repeat-containing protein [General f	95.56
COG4783	484	Putative Zn-dependent protease, contains TPR repea	95.48
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	95.41
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.4
PRK14574	822	hmsH outer membrane protein; Provisional	95.37
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	95.35
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.25
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.05
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.03
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.96
PRK15331	165	chaperone protein SicA; Provisional	94.94
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.86
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	94.74
PF12688	120	TPR_5: Tetratrico peptide repeat	94.62
KOG1586	288	consensus Protein required for fusion of vesicles	94.62
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.59
KOG1128	777	consensus Uncharacterized conserved protein, conta	94.41
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	94.37
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.26
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	93.99
PF12688	120	TPR_5: Tetratrico peptide repeat	93.94
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	93.87
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	93.69
KOG3060	289	consensus Uncharacterized conserved protein [Funct	93.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	93.6
COG3947	361	Response regulator containing CheY-like receiver a	93.58
KOG3785	557	consensus Uncharacterized conserved protein [Funct	93.49
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.38
PF13428	44	TPR_14: Tetratricopeptide repeat	93.23
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	93.18
KOG3364	149	consensus Membrane protein involved in organellar	93.13
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	93.09
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	92.88
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	92.86
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.84
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	92.66
KOG2376	652	consensus Signal recognition particle, subunit Srp	92.63
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	92.53
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	92.42
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	92.11
COG4700	251	Uncharacterized protein conserved in bacteria cont	91.65
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	91.61
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	91.57
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	91.54
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	91.51
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	91.47
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	91.45
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	91.28
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.18
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.17
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	91.11
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	91.11
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	91.11
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	91.1
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	91.06
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.03
PRK14720	906	transcript cleavage factor/unknown domain fusion p	91.0
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	90.74
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	90.53
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	90.43
KOG1941	518	consensus Acetylcholine receptor-associated protei	90.22
KOG1129	478	consensus TPR repeat-containing protein [General f	89.85
KOG1128	777	consensus Uncharacterized conserved protein, conta	89.63
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	89.58
PF04212	69	MIT: MIT (microtubule interacting and transport) d	89.26
PF13512	142	TPR_18: Tetratricopeptide repeat	89.18
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	89.15
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	89.04
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	88.99
KOG2796	366	consensus Uncharacterized conserved protein [Funct	88.88
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	88.66
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.64
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	88.46
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	88.42
cd02656	75	MIT MIT: domain contained within Microtubule Inter	88.18
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	88.05
PRK10941	269	hypothetical protein; Provisional	87.89
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	87.47
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	87.46
COG4783	484	Putative Zn-dependent protease, contains TPR repea	87.31
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.03
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	86.31
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	86.3
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	86.27
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	86.05
KOG3785	557	consensus Uncharacterized conserved protein [Funct	85.81
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	84.87
KOG3060	289	consensus Uncharacterized conserved protein [Funct	84.64
KOG1585	308	consensus Protein required for fusion of vesicles	84.59
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	84.37
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	84.09
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	84.08
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	83.67
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	83.07
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	82.76
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	82.75
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	82.6
PF13371	73	TPR_9: Tetratricopeptide repeat	82.3
KOG0495	913	consensus HAT repeat protein [RNA processing and m	82.25
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	82.08
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	82.07
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	81.96
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	81.02
COG3118	304	Thioredoxin domain-containing protein [Posttransla	80.85
KOG4507	886	consensus Uncharacterized conserved protein, conta	80.75
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.39

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.7e-60  Score=454.91  Aligned_cols=330  Identities=47%  Similarity=0.770  Sum_probs=304.9

Q ss_pred             ecCCccCCCCCCCEEEEEEEEEecCCcEEecc---ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCC
Q 036950           59 VEGKKWENPKDLDEVFVKYEVRLEDGTLISKS---DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRP  135 (469)
Q Consensus        59 ~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t---~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~  135 (469)
                      .+|+|+..|..||.|.+||++++.||+.|+||   .|+.|.+|.|.++.||..++.+|+.              |+.+.+
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~p   66 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSP   66 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCC
Confidence            37899899999999999999999999999999   5999999999999999999999998              444443


Q ss_pred             CCCCCCCCCCCceEEEeEeeeeeccccccccchhhhhhhhhcCCC-CCCCc-----eEE-EEEecCCcEEEecCCCCCCc
Q 036950          136 ATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG-YENQM-----MVQ-WFKLHDGTVFVKKGHDEEPL  208 (469)
Q Consensus       136 ~~~~~~~ip~~~~l~~~v~l~~~~~~~dv~~d~~l~k~il~~G~g-~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p  208 (469)
                           +.||++++|.|+|+++          |++|+|+|+++|.| ..+|+     .|| .|.+.++ +|+++    .-.
T Consensus        67 -----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~----~~~  126 (397)
T KOG0543|consen   67 -----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQR----ELR  126 (397)
T ss_pred             -----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecc----ccc
Confidence                 6799999999999997          78999999999999 67888     455 8999888 77765    455


Q ss_pred             EEEEcCC-CccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeee-ecccccCCChHHH
Q 036950          209 FEFKIDE-EQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI-KEKESWDMNTQEK  286 (469)
Q Consensus       209 ~~~~lG~-~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~-~~~~~~~l~~~e~  286 (469)
                      |.|.+|+ ..+|.||+.||++|++||++.|+|+|+|+||+.+...  +.||||++|.|+|+|++|. +....|.|..+|+
T Consensus       127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~--p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~  204 (397)
T KOG0543|consen  127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEP--PLIPPNATLLYEVELLDFELKEDESWKMFAEER  204 (397)
T ss_pred             eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCC--CCCCCCceEEEEEEEEeeecCcccccccchHHH
Confidence            8999998 5999999999999999999999999999999655553  8999999999999999999 7889999999999


Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      ++.|.+.|+.||.+||.|+|..|...|.+|+.+++++...++++.+....++..||+|+|+||+|+++|..|+..|++||
T Consensus       205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 036950          367 ELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKL  423 (469)
Q Consensus       367 ~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~~  423 (469)
                      +++                       +.+|++|++++|+|+     +|+.+|.+|++++++++.+++++|++||+++...
T Consensus       285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk-----a~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~  359 (397)
T KOG0543|consen  285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK-----AARAELIKLKQKIREYEEKEKKMYANMFAKLAEE  359 (397)
T ss_pred             hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            999                       789999999999999     9999999999999999999999999999998876


Q ss_pred             hhhhhh
Q 036950          424 EQAKSA  429 (469)
Q Consensus       424 ~~~~~~  429 (469)
                      ..+...
T Consensus       360 ~~k~~s  365 (397)
T KOG0543|consen  360 SAKTKS  365 (397)
T ss_pred             cccccc
Confidence            554433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.3e-29  Score=227.74  Aligned_cols=246  Identities=26%  Similarity=0.360  Sum_probs=205.6

Q ss_pred             chhhhhhhhhcCCCCCCCc-------eEE--EEEe-cCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEE
Q 036950          167 DKKVLKKILKEGDGYENQM-------MVQ--WFKL-HDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVAL  236 (469)
Q Consensus       167 d~~l~k~il~~G~g~~~p~-------~V~--~~~l-~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~  236 (469)
                      -.++.|+|+..|+|. .|+       +.|  +.+. +.++++|+| -..+.|+++.+|.-.-.|-||.+|.+|.++|.+.
T Consensus         9 ~~gv~Kril~~G~g~-l~e~~dGTrv~FHfrtl~~~e~~tviDDs-Rk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq   86 (329)
T KOG0545|consen    9 VEGVKKRILHGGTGE-LPEFIDGTRVIFHFRTLKCDEERTVIDDS-RKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ   86 (329)
T ss_pred             chhhhHhhccCCCcc-CccccCCceEEEEEEecccCcccccccch-hhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence            457999999999996 444       333  2222 246799988 4568999999999999999999999999999999


Q ss_pred             EEEcCCC--------------ccCC--------------------CCCcccccCCCCCceEEEEEEEeeeee----cccc
Q 036950          237 VTIEPEY--------------AFGS--------------------CSSEKELAIVPANSTLFYEVELVSFIK----EKES  278 (469)
Q Consensus       237 ~~i~~~~--------------~yg~--------------------~~~~~~~~~ip~~~~l~f~vel~~~~~----~~~~  278 (469)
                      |++....              +-|-                    .|...--......++|+|.|+|+.+..    ..+.
T Consensus        87 F~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~  166 (329)
T KOG0545|consen   87 FWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRET  166 (329)
T ss_pred             hhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcccc
Confidence            9986531              1111                    000000000122368999999999984    5689


Q ss_pred             cCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCH
Q 036950          279 WDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD---SSFSDEEKQQAKVLKITCNLNNAACKLKLKEY  355 (469)
Q Consensus       279 ~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~---~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~  355 (469)
                      |.|+.+||+.....+.++||.+|+.|+|.+|..+|..||-++...   ....+++|.++..+...+++|.|+|+++.++|
T Consensus       167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~  246 (329)
T KOG0545|consen  167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY  246 (329)
T ss_pred             ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence            999999999999999999999999999999999999999998765   23446899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          356 KQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQF  412 (469)
Q Consensus       356 ~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~  412 (469)
                      -+++++|+.+|..+                       .+||+++|+++|.-.+    .+.++|..+..++++.++.++-.
T Consensus       247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas----vVsrElr~le~r~~ek~~edr~~  322 (329)
T KOG0545|consen  247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS----VVSRELRLLENRMAEKQEEDRLR  322 (329)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH----HHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999999988                       7899999999999886    89999999999999999999999


Q ss_pred             HHHhhh
Q 036950          413 YGNIFA  418 (469)
Q Consensus       413 ~~~mf~  418 (469)
                      |++||+
T Consensus       323 ~~kmfs  328 (329)
T KOG0545|consen  323 CRKMFS  328 (329)
T ss_pred             HHHhcC
Confidence            999996

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=9.4e-28  Score=206.76  Aligned_cols=170  Identities=26%  Similarity=0.441  Sum_probs=134.3

Q ss_pred             EEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccc---cccccchhhh
Q 036950           95 FTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTV---SDITKDKKVL  171 (469)
Q Consensus        95 ~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~---~dv~~d~~l~  171 (469)
                      |.+|.+.+++|++.+|.||+.|++..+.+||+++||..+..         .-..+++.+.++.+...   ......+.+.
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~   71 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG---------DLNILVITILLVLLFRASAAEKWNPDEELQ   71 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc---------cccceEEEeeeeehhhhhhhhhcCCCCcee
Confidence            35688899999999999999999999999999999954432         12245666666665432   1122334454


Q ss_pred             hhhhhcCCCCCCCc----e--EE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCc
Q 036950          172 KKILKEGDGYENQM----M--VQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYA  244 (469)
Q Consensus       172 k~il~~G~g~~~p~----~--V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~  244 (469)
                      -.++.+-.......    +  +| ++.+.||+.|||| |+++.|++|+||.++||+|||++|.+|++||+..++|||++|
T Consensus        72 I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS-~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~Lg  150 (188)
T KOG0549|consen   72 IGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSS-YSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLG  150 (188)
T ss_pred             EEEEECCccccccccCCCEEEEEEEEEecCCCEEeee-ccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCcccc
Confidence            45554422211111    4  44 8999999999998 999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCCceEEEEEEEeeeeeccc
Q 036950          245 FGSCSSEKELAIVPANSTLFYEVELVSFIKEKE  277 (469)
Q Consensus       245 yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~~~  277 (469)
                      ||++|.+.   .||++++|+|+|||+.+.+.+.
T Consensus       151 YG~~G~~~---~IP~~A~LiFdiELv~i~~~~~  180 (188)
T KOG0549|consen  151 YGERGAPP---KIPGDAVLIFDIELVKIERGPP  180 (188)
T ss_pred             CccCCCCC---CCCCCeeEEEEEEEEEeecCCC
Confidence            99999874   5999999999999999987643

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.4e-25  Score=191.92  Aligned_cols=151  Identities=28%  Similarity=0.440  Sum_probs=122.9

Q ss_pred             CCCCcEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEeecceeecc---ccccCCceEEEEEecCCcc-CCCCCCCEEEEE
Q 036950            1 MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVK---DICKDGGIFKKILVEGKKW-ENPKDLDEVFVK   76 (469)
Q Consensus         1 m~~Ge~~~~~~~p~~~yg~~g~~~~ip~~~~l~f~v~l~~~~~~~---dv~~d~g~~~~i~~~G~g~-~~~~~gd~V~i~   76 (469)
                      ||.||++++.+||+++||..+-.    .-..++|.+.++......   .-.....+...++..-... .+.+.||.|.+|
T Consensus        19 ~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~p~~C~~kak~GD~l~~H   94 (188)
T KOG0549|consen   19 MCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLKKPEECPEKAKKGDTLHVH   94 (188)
T ss_pred             hhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEECCccccccccCCCEEEEE
Confidence            89999999999999999954433    234566777665543321   1123455555555553322 577999999999


Q ss_pred             EEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCCCCCceEEEe
Q 036950           77 YEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHIT  152 (469)
Q Consensus        77 y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~  152 (469)
                      |++.+.||++||||    .|++|.+|.+++|+||+.+|.+|++||++.+.|||+++||++|.+     +.||++++|.|+
T Consensus        95 Y~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~-----~~IP~~A~LiFd  169 (188)
T KOG0549|consen   95 YTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGAP-----PKIPGDAVLIFD  169 (188)
T ss_pred             EEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCCC-----CCCCCCeeEEEE
Confidence            99999999999998    699999999999999999999999999999999999999999975     559999999999


Q ss_pred             Eeeeeecc
Q 036950          153 LEMVSWKT  160 (469)
Q Consensus       153 v~l~~~~~  160 (469)
                      |+|+++..
T Consensus       170 iELv~i~~  177 (188)
T KOG0549|consen  170 IELVKIER  177 (188)
T ss_pred             EEEEEeec
Confidence            99999876

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1e-24  Score=211.13  Aligned_cols=295  Identities=28%  Similarity=0.401  Sum_probs=210.5

Q ss_pred             CCCCCCCCCCCCcceEEEEeecceeeccccccCCceEEEEEecCCc-cCCCCCCCEEEEEEEEEecCCcEEecc-ccEEE
Q 036950           18 GESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVEGKK-WENPKDLDEVFVKYEVRLEDGTLISKS-DGVEF   95 (469)
Q Consensus        18 g~~g~~~~ip~~~~l~f~v~l~~~~~~~dv~~d~g~~~~i~~~G~g-~~~~~~gd~V~i~y~~~~~~G~~~~~t-~~~~~   95 (469)
                      |+.|+||.||++++|.|+|+++          |++|+++|+++|.| ..+|..|..|.+||++.+.++ +|+++ ..+.|
T Consensus        61 g~~~~pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~fe~  129 (397)
T KOG0543|consen   61 GEAGSPPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELRFEF  129 (397)
T ss_pred             cccCCCCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccceEE
Confidence            8999999999999999999998          79999999999999 679999999999999998666 78776 55777


Q ss_pred             EECC-CccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccccccccchhhhhhh
Q 036950           96 TVGD-GYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKI  174 (469)
Q Consensus        96 ~ig~-~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~dv~~d~~l~k~i  174 (469)
                      ..|. ..++.||+.+|..|++||.+.|+|+|.++||+.+..    ++.|||+++|.|+|+|+++....+.+-..... .+
T Consensus       130 ~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~-e~  204 (397)
T KOG0543|consen  130 GEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFELKEDESWKMFAE-ER  204 (397)
T ss_pred             ecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeeecCcccccccchH-HH
Confidence            7777 469999999999999999999999999999954443    37899999999999999998434332111000 11


Q ss_pred             hhcCCCCCCCceEEEEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccc
Q 036950          175 LKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKEL  254 (469)
Q Consensus       175 l~~G~g~~~p~~V~~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~  254 (469)
                      +..++-          .-+.|+.+..            -|  .    |..|.   +..+++.-++..+..+         
T Consensus       205 l~~A~~----------~ke~Gn~~fK------------~g--k----~~~A~---~~Yerav~~l~~~~~~---------  244 (397)
T KOG0543|consen  205 LEAADR----------KKERGNVLFK------------EG--K----FKLAK---KRYERAVSFLEYRRSF---------  244 (397)
T ss_pred             HHHHHH----------HHHhhhHHHh------------hc--h----HHHHH---HHHHHHHHHhhccccC---------
Confidence            111110          0012222211            11  1    11111   1111111111111110         


Q ss_pred             cCCCCCceEEEEEEEeeeeecccccCCChHHHHHH---hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 036950          255 AIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEA---AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEK  331 (469)
Q Consensus       255 ~~ip~~~~l~f~vel~~~~~~~~~~~l~~~e~~~~---a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~  331 (469)
                                               +. .+++...   ...+.+.+-.+.|.++|..|+....++|.+-+..        
T Consensus       245 -------------------------~~-ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N--------  290 (397)
T KOG0543|consen  245 -------------------------DE-EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN--------  290 (397)
T ss_pred             -------------------------CH-HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--------
Confidence                                     00 1222222   2233478888999999999999999999987765        


Q ss_pred             HHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          332 QQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQ  411 (469)
Q Consensus       332 ~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~  411 (469)
                             .+.++-++.||+-+++|+.|+.++++|++++..+  ++..     .     ++.+..++++....+.++.-++
T Consensus       291 -------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N--ka~~-----~-----el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543|consen  291 -------VKALYRRGQALLALGEYDLARDDFQKALKLEPSN--KAAR-----A-----ELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             -------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc--HHHH-----H-----HHHHHHHHHHHHHHHHHHHHHH
Confidence                   7788999999999999999999999999999333  2221     2     5667777777777778888889


Q ss_pred             HHHHhhhhhh
Q 036950          412 FYGNIFAKIN  421 (469)
Q Consensus       412 ~~~~mf~~~~  421 (469)
                      ||.++-....
T Consensus       352 mF~k~~~~~~  361 (397)
T KOG0543|consen  352 MFAKLAEESA  361 (397)
T ss_pred             Hhhccccccc
Confidence            9999876533

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.3e-23  Score=158.31  Aligned_cols=102  Identities=32%  Similarity=0.569  Sum_probs=97.3

Q ss_pred             ceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCc
Q 036950           52 GIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQY  127 (469)
Q Consensus        52 g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~  127 (469)
                      |+.++++.+|+|...|+.|+.|++||++.+.||+.||||    .|+.|.+|.|++|+||++++..|.+|+++.+.|+|++
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~   81 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY   81 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence            578899999999889999999999999999999999998    7999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          128 AFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       128 ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      |||..+.+     ..||||++|+|+|+|+++
T Consensus        82 aYG~~G~p-----~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   82 AYGPRGHP-----GGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccCCCCCC-----CccCCCcEEEEEEEEEec
Confidence            99999975     679999999999999976

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.6e-23  Score=158.07  Aligned_cols=100  Identities=37%  Similarity=0.581  Sum_probs=91.8

Q ss_pred             hhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCC
Q 036950          169 KVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPE  242 (469)
Q Consensus       169 ~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~  242 (469)
                      ++.+.+|+.|+|...|.     +|| +|.|.||+.|||+ .+++.|+.|.+|.|.||.||++++..|.+||++.+.|+|+
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs-~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd   80 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSS-RDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPD   80 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecc-cccCCCeeEEecCcceeechhhcchhccccccceeeeccc
Confidence            35678899999977776     566 9999999999998 6889999999999999999999999999999999999999


Q ss_pred             CccCCCCCcccccCCCCCceEEEEEEEeee
Q 036950          243 YAFGSCSSEKELAIVPANSTLFYEVELVSF  272 (469)
Q Consensus       243 ~~yg~~~~~~~~~~ip~~~~l~f~vel~~~  272 (469)
                      ||||..|.+   ..||||++|+|+|||+++
T Consensus        81 ~aYG~~G~p---~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   81 YAYGPRGHP---GGIPPNATLVFDVELLKV  107 (108)
T ss_pred             cccCCCCCC---CccCCCcEEEEEEEEEec
Confidence            999999966   589999999999999986

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.8e-22  Score=176.26  Aligned_cols=102  Identities=32%  Similarity=0.523  Sum_probs=95.9

Q ss_pred             cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950           49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK  124 (469)
Q Consensus        49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip  124 (469)
                      .++|+.|+++..|+| ..|..+|.|.+||+|++.||++||||    +|+.|.+|  ++|+||.++|.+|++|++++++||
T Consensus        99 ~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP  175 (205)
T COG0545          99 LPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIP  175 (205)
T ss_pred             CCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeC
Confidence            689999999999999 89999999999999999999999998    78888887  899999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          125 PQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       125 ~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      |++|||..+.+     ..||||++|+|+|+|+++
T Consensus       176 ~~laYG~~g~~-----g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         176 PELAYGERGVP-----GVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             chhccCcCCCC-----CCCCCCCeEEEEEEEEec
Confidence            99999999864     449999999999999986

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.3e-21  Score=172.82  Aligned_cols=101  Identities=38%  Similarity=0.521  Sum_probs=92.3

Q ss_pred             cchhhhhhhhhcCCCCCCCc----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEc
Q 036950          166 KDKKVLKKILKEGDGYENQM----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIE  240 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~  240 (469)
                      -++++.+++++.|+|.....    +|| +|+|.||++|||+ +.++.|+.|.||  .||+||+.+|.+|++|++..++||
T Consensus        99 ~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS-~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP  175 (205)
T COG0545          99 LPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSS-YDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIP  175 (205)
T ss_pred             CCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccc-cccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeC
Confidence            46789999999999975443    566 9999999999998 899999999999  999999999999999999999999


Q ss_pred             CCCccCCCCCcccccCCCCCceEEEEEEEeee
Q 036950          241 PEYAFGSCSSEKELAIVPANSTLFYEVELVSF  272 (469)
Q Consensus       241 ~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~  272 (469)
                      |.+|||..+.+   ..||||++|+|+|+|+++
T Consensus       176 ~~laYG~~g~~---g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         176 PELAYGERGVP---GVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             chhccCcCCCC---CCCCCCCeEEEEEEEEec
Confidence            99999999876   359999999999999986

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.80  E-value=5.7e-19  Score=154.97  Aligned_cols=150  Identities=31%  Similarity=0.378  Sum_probs=136.3

Q ss_pred             HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950          286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV  365 (469)
Q Consensus       286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a  365 (469)
                      .+..+.++|.+||.+|+.|+|..|...|+.||..++..+          .++++.||+|+|+|++|++.|+.||.+|.+|
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa  160 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSKA  160 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence            378899999999999999999999999999999998653          4677999999999999999999999999999


Q ss_pred             Hhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 036950          366 LELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINK  422 (469)
Q Consensus       366 l~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~  422 (469)
                      |++.                       +.||++.++++|.+.     ++++.+.++..++...+++-+.   .|..++++
T Consensus       161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~-----ear~~i~rl~~~i~ernEkmKe---e~m~kLKd  232 (271)
T KOG4234|consen  161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR-----EAREAIARLPPKINERNEKMKE---EMMEKLKD  232 (271)
T ss_pred             HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH-----HHHHHHHhcCHHHHHHHHHHHH---HHHHHHHH
Confidence            9998                       789999999999999     9999999999998887777655   89999999


Q ss_pred             chhhhhhccccccCCCccccccc-ccccchhh
Q 036950          423 LEQAKSASSMAKQEPAPMVLIAR-HDTSIKLS  453 (469)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  453 (469)
                      .++.-.....-..+.+.|+.+++ .+.||.+.
T Consensus       233 lGN~iL~pFGlStdnFqmvqd~nTGsySi~fk  264 (271)
T KOG4234|consen  233 LGNFILSPFGLSTDNFQMVQDPNTGSYSINFK  264 (271)
T ss_pred             hhhhhcccccccccceeeeeCCCCCceeEEec
Confidence            99999988888899999999977 78888764

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.80  E-value=5.8e-19  Score=157.81  Aligned_cols=106  Identities=22%  Similarity=0.342  Sum_probs=96.9

Q ss_pred             ccCCceEEEEEec--CCccCCCCCCCEEEEEEEEEecCCcEEecc---ccEEEEECCCccchhHHHHHhcccCCcEEEEE
Q 036950           48 CKDGGIFKKILVE--GKKWENPKDLDEVFVKYEVRLEDGTLISKS---DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLT  122 (469)
Q Consensus        48 ~~d~g~~~~i~~~--G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t---~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~  122 (469)
                      .+++|+.|.++..  |+| ..|+.||.|.+||++++.+|++|+++   .|+.|.+|.+++++||+++|.+|++||+++|.
T Consensus        66 ~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~  144 (177)
T TIGR03516        66 TSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFL  144 (177)
T ss_pred             ECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEE
Confidence            3678999999976  555 68999999999999999999999988   68999999999999999999999999999999


Q ss_pred             EcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeec
Q 036950          123 VKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK  159 (469)
Q Consensus       123 ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  159 (469)
                      |||++|||..+.+     ..||+|++|+|+|+|+++.
T Consensus       145 iP~~~AYG~~g~~-----~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       145 FPSHKAYGYYGDQ-----NKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             ECHHHcCCCCCCC-----CCcCcCCcEEEEEEEEEec
Confidence            9999999998864     5699999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=7.2e-19  Score=159.61  Aligned_cols=105  Identities=27%  Similarity=0.445  Sum_probs=99.0

Q ss_pred             cccCCceEEEEEecCCccCCCCCCCEEEEEEEEEec-CCcEEecc---ccEE-EEECCCccchhHHHHHhcccCCcEEEE
Q 036950           47 ICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLE-DGTLISKS---DGVE-FTVGDGYFCAALAKAVKTMKKGEKVLL  121 (469)
Q Consensus        47 v~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~-~G~~~~~t---~~~~-~~ig~~~~~~gle~aL~gmk~Ge~~~~  121 (469)
                      ....+|+.|.-++-|+| ..+..|+.|.+||.+++. +|.+|+++   .|+. |.+|.+.+|+||+.++.||++|++++|
T Consensus       116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv  194 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV  194 (226)
T ss_pred             eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence            34589999999999998 899999999999999997 99999988   7888 999999999999999999999999999


Q ss_pred             EEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          122 TVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       122 ~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      +|||++|||..+.+      .||+|++|+|+|+|+.+
T Consensus       195 iIPp~lgYg~~g~~------~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  195 IIPPELGYGKKGVP------EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             EeCccccccccCcC------cCCCCCcEEEEEEEEec
Confidence            99999999999884      59999999999999976

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.79  E-value=1.3e-18  Score=159.41  Aligned_cols=102  Identities=27%  Similarity=0.448  Sum_probs=95.3

Q ss_pred             cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950           49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK  124 (469)
Q Consensus        49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip  124 (469)
                      +++|+.|+|+.+|+| ..|..||.|.+||++++.||++|+++    .|+.|.++  .+++||+++|.+|++|+++.|.||
T Consensus       100 t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~IP  176 (206)
T PRK11570        100 TESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTIP  176 (206)
T ss_pred             CCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEEC
Confidence            689999999999999 78999999999999999999999987    68899885  699999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          125 PQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       125 ~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      |++|||+.+.+     +.|||+++|+|+|+|++|
T Consensus       177 ~~lAYG~~g~~-----~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        177 HELAYGERGAG-----ASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             HHHcCCCCCCC-----CCcCCCCeEEEEEEEEEE
Confidence            99999998863     569999999999999986

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.72  E-value=5.4e-17  Score=154.13  Aligned_cols=104  Identities=32%  Similarity=0.549  Sum_probs=94.5

Q ss_pred             cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950           49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK  124 (469)
Q Consensus        49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip  124 (469)
                      +++|++|+|+.+|+| ..|..||.|.|||++++.||++|+++    .|+.|.+  +.+++||+++|.+|++|+++.|+||
T Consensus       144 t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~IP  220 (269)
T PRK10902        144 TSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIP  220 (269)
T ss_pred             CCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEEEC
Confidence            689999999999999 78999999999999999999999987    4666655  5799999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccc
Q 036950          125 PQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTV  161 (469)
Q Consensus       125 ~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~  161 (469)
                      ++++||..+.      +.||++++|+|+|+|+++...
T Consensus       221 ~~laYG~~g~------~gIppns~LvfeVeLl~V~~~  251 (269)
T PRK10902        221 PELAYGKAGV------PGIPANSTLVFDVELLDVKPA  251 (269)
T ss_pred             chhhCCCCCC------CCCCCCCcEEEEEEEEEeccC
Confidence            9999999875      358999999999999998753

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.71  E-value=3.5e-17  Score=149.97  Aligned_cols=100  Identities=33%  Similarity=0.413  Sum_probs=90.2

Q ss_pred             cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEE
Q 036950          166 KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTI  239 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i  239 (469)
                      .++++.++++++|+|.. |.     .|| .+++.||++||++ |.++.|++|.+|  .+++||+.+|.+|++|+++.|+|
T Consensus       100 t~sGl~y~vi~~G~G~~-p~~~d~V~v~Y~g~l~dG~vfdss-~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I  175 (206)
T PRK11570        100 TESGLQFRVLTQGEGAI-PARTDRVRVHYTGKLIDGTVFDSS-VARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI  175 (206)
T ss_pred             CCCCcEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCEEEec-cCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence            36789999999999974 44     455 8999999999998 778899999997  79999999999999999999999


Q ss_pred             cCCCccCCCCCcccccCCCCCceEEEEEEEeee
Q 036950          240 EPEYAFGSCSSEKELAIVPANSTLFYEVELVSF  272 (469)
Q Consensus       240 ~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~  272 (469)
                      ||++|||+.+..   +.|||+++|+|+|+|++|
T Consensus       176 P~~lAYG~~g~~---~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        176 PHELAYGERGAG---ASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CHHHcCCCCCCC---CCcCCCCeEEEEEEEEEE
Confidence            999999998864   479999999999999987

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.70  E-value=1.7e-16  Score=128.15  Aligned_cols=88  Identities=35%  Similarity=0.610  Sum_probs=81.4

Q ss_pred             CCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCC
Q 036950           65 ENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDE  140 (469)
Q Consensus        65 ~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~  140 (469)
                      .+|+.||.|.+||++++.+|++|+++    .|+.|.+|.+++++||+++|.+|++||++.|.||++++||..+...    
T Consensus         3 ~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~----   78 (94)
T PF00254_consen    3 RTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP----   78 (94)
T ss_dssp             SSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT----
T ss_pred             ccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC----
Confidence            46999999999999999899999987    7899999999999999999999999999999999999999987642    


Q ss_pred             CCCCCCceEEEeEeee
Q 036950          141 DAVPSNANLHITLEMV  156 (469)
Q Consensus       141 ~~ip~~~~l~~~v~l~  156 (469)
                      ..||++++|+|+|+|+
T Consensus        79 ~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   79 PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             TTBTTTSEEEEEEEEE
T ss_pred             CCcCCCCeEEEEEEEC
Confidence            3499999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=8.1e-17  Score=150.58  Aligned_cols=105  Identities=34%  Similarity=0.465  Sum_probs=98.1

Q ss_pred             ChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHH
Q 036950          282 NTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKL  361 (469)
Q Consensus       282 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~  361 (469)
                      +++|....|+++|++||.+.+.++|++|+.+|++||.+.|.+               ..+|+|||++|++||+|+.|+++
T Consensus        73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---------------AVyycNRAAAy~~Lg~~~~AVkD  137 (304)
T KOG0553|consen   73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---------------AVYYCNRAAAYSKLGEYEDAVKD  137 (304)
T ss_pred             ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---------------chHHHHHHHHHHHhcchHHHHHH
Confidence            344788999999999999999999999999999999999877               78999999999999999999999


Q ss_pred             HHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          362 CSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       362 ~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                      |..||.+|                       .+.|++||++||+|.     ..++.|..+++++++..
T Consensus       138 ce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne-----~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  138 CESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE-----SYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH-----HHHHHHHHHHHHhcCCC
Confidence            99999999                       567999999999999     99999999999887766

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.2e-16  Score=145.28  Aligned_cols=101  Identities=33%  Similarity=0.468  Sum_probs=88.4

Q ss_pred             cchhhhhhhhhcCCCCCCCc----eEE-EEEec-CCcEEEecCCCCCCcEE-EEcCCCccchhHHHHHhccccCcEEEEE
Q 036950          166 KDKKVLKKILKEGDGYENQM----MVQ-WFKLH-DGTVFVKKGHDEEPLFE-FKIDEEQVIDGLDRAVKTMKKGEVALVT  238 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~----~V~-~~~l~-~g~~~d~~~~~~~~p~~-~~lG~~~v~~gle~~L~~m~~Ge~~~~~  238 (469)
                      -.++++++-++-|+|.....    .|+ .|+|. +|++||++ + .+.|+. |.+|.+.||+||+.++.+|++|.+.+|+
T Consensus       118 l~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~-~-~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrvi  195 (226)
T KOG0552|consen  118 LPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSN-F-GGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVI  195 (226)
T ss_pred             cCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecc-c-CCCCccccccCCCCCCchHHHhhhhhccCCeeEEE
Confidence            35677777788899875444    344 89998 99999998 4 378888 9999999999999999999999999999


Q ss_pred             EcCCCccCCCCCcccccCCCCCceEEEEEEEeee
Q 036950          239 IEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF  272 (469)
Q Consensus       239 i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~  272 (469)
                      |||.+|||..+.+    .||||++|+|+|+|+.+
T Consensus       196 IPp~lgYg~~g~~----~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  196 IPPELGYGKKGVP----EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             eCccccccccCcC----cCCCCCcEEEEEEEEec
Confidence            9999999998876    59999999999999976

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.64  E-value=6e-16  Score=138.41  Aligned_cols=102  Identities=20%  Similarity=0.314  Sum_probs=86.9

Q ss_pred             cchhhhhhhhhc--CCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEE
Q 036950          166 KDKKVLKKILKE--GDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALV  237 (469)
Q Consensus       166 ~d~~l~k~il~~--G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~  237 (469)
                      .++++.+.++..  |+|. .|.     +++ .+++.||++|+++ +. ..|++|.+|.+.+++||+.+|.+|++||++.|
T Consensus        67 t~sGl~Y~v~~~~~g~g~-~p~~gd~V~v~Y~~~~~dG~v~~ss-~~-~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~  143 (177)
T TIGR03516        67 SQNGFWYYYNQKDTGEGT-TPEFGDLVTFEYDIRALDGDVIYSE-EE-LGPQTYKVDQQDLFSGLRDGLKLMKEGETATF  143 (177)
T ss_pred             CCCccEEEEEEecCCCCC-cCCCCCEEEEEEEEEeCCCCEEEeC-CC-CCCEEEEeCCcchhHHHHHHHcCCCCCCEEEE
Confidence            356777777765  5554 333     455 8999999999998 44 46999999999999999999999999999999


Q ss_pred             EEcCCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          238 TIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       238 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      ++||++|||..+..   ..||||++|+|+|+|+++.
T Consensus       144 ~iP~~~AYG~~g~~---~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       144 LFPSHKAYGYYGDQ---NKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EECHHHcCCCCCCC---CCcCcCCcEEEEEEEEEec
Confidence            99999999998765   4799999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.61  E-value=5.8e-15  Score=119.12  Aligned_cols=82  Identities=39%  Similarity=0.591  Sum_probs=74.4

Q ss_pred             eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEE
Q 036950          186 MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLF  264 (469)
Q Consensus       186 ~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~  264 (469)
                      +++ .+++.+|+.|+++ +..+.|++|.+|.+.+++||+.+|.+|++||++.|++|+.++||+.+...  ..||++++|+
T Consensus        12 ~i~y~~~~~~g~~~~~~-~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~--~~ip~~~~l~   88 (94)
T PF00254_consen   12 TIHYTGRLEDGKVFDSS-YQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP--PKIPPNSTLV   88 (94)
T ss_dssp             EEEEEEEETTSEEEEET-TTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT--TTBTTTSEEE
T ss_pred             EEEEEEEECCCcEEEEe-eecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC--CCcCCCCeEE
Confidence            444 8888899999998 66789999999999999999999999999999999999999999988743  4599999999


Q ss_pred             EEEEEe
Q 036950          265 YEVELV  270 (469)
Q Consensus       265 f~vel~  270 (469)
                      |+|+|+
T Consensus        89 f~Iell   94 (94)
T PF00254_consen   89 FEIELL   94 (94)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999986

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.59  E-value=4.3e-15  Score=141.17  Aligned_cols=102  Identities=33%  Similarity=0.483  Sum_probs=90.6

Q ss_pred             cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEE
Q 036950          166 KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTI  239 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i  239 (469)
                      .++++.++|+++|+|. .|.     .|+ .+++.||++||++ +.++.|++|.++  .++|||+.+|.+|++|+++.|+|
T Consensus       144 t~sGl~y~Vi~~G~G~-~p~~gD~V~V~Y~g~l~dG~vfdss-~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~I  219 (269)
T PRK10902        144 TSTGLLYKVEKEGTGE-APKDSDTVVVNYKGTLIDGKEFDNS-YTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI  219 (269)
T ss_pred             CCCccEEEEEeCCCCC-CCCCCCEEEEEEEEEeCCCCEeecc-ccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEE
Confidence            3678999999999997 444     455 8898999999997 777899999997  69999999999999999999999


Q ss_pred             cCCCccCCCCCcccccCCCCCceEEEEEEEeeeeec
Q 036950          240 EPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKE  275 (469)
Q Consensus       240 ~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~  275 (469)
                      |++++||+.+..    .|||+++|+|+|+|+++...
T Consensus       220 P~~laYG~~g~~----gIppns~LvfeVeLl~V~~~  251 (269)
T PRK10902        220 PPELAYGKAGVP----GIPANSTLVFDVELLDVKPA  251 (269)
T ss_pred             CchhhCCCCCCC----CCCCCCcEEEEEEEEEeccC
Confidence            999999998753    59999999999999999753

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.2e-14  Score=140.60  Aligned_cols=162  Identities=21%  Similarity=0.288  Sum_probs=141.0

Q ss_pred             HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950          285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK  364 (469)
Q Consensus       285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~  364 (469)
                      -..+..+.+|+.||.+||+|+|..|..+|+.||.+.|..           ....+.||.|||.++.++|+..+||.+|+.
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-----------~~~naklY~nra~v~~rLgrl~eaisdc~~  312 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-----------KKTNAKLYGNRALVNIRLGRLREAISDCNE  312 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-----------cchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence            355778889999999999999999999999999988765           334489999999999999999999999999


Q ss_pred             HHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036950          365 VLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKIN  421 (469)
Q Consensus       365 al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~  421 (469)
                      |+++|                       .+|+++|++++.+ .     .+++.+.+++..+++.++++   |.++++...
T Consensus       313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~-----e~r~~l~~A~~aLkkSkRkd---~ykilGi~~  383 (486)
T KOG0550|consen  313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-C-----EIRRTLREAQLALKKSKRKD---WYKILGISR  383 (486)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c-----chHHHHHHHHHHHHHhhhhh---HHHHhhhhh
Confidence            99999                       6899999999888 6     79999999999988887666   899999999


Q ss_pred             hchhhhhhccccccC--CCcccccccccccchhhhhheeccccccccc
Q 036950          422 KLEQAKSASSMAKQE--PAPMVLIARHDTSIKLSMIAIESTRTVLISP  467 (469)
Q Consensus       422 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (469)
                      ...+.+++++.++..  +||+..-.+ +...+..|-++-.+-+.|-||
T Consensus       384 ~as~~eikkayrk~AL~~Hpd~~ags-q~eaE~kFkevgeAy~il~d~  430 (486)
T KOG0550|consen  384 NASDDEIKKAYRKLALVHHPDKNAGS-QKEAEAKFKEVGEAYTILSDP  430 (486)
T ss_pred             hcccchhhhHHHHHHHHhCCCcCcch-hHHHHHHHHHHHHHHHHhcCH
Confidence            999999999998877  778754443 666778888888888888776

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.53  E-value=1.1e-14  Score=137.55  Aligned_cols=164  Identities=18%  Similarity=0.236  Sum_probs=141.6

Q ss_pred             HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950          285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK  364 (469)
Q Consensus       285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~  364 (469)
                      .+++...+..+...+....++|.+|+..|++.++.-|......           ...+--+|.||.+-+++-+||..|++
T Consensus       264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir-----------~~~~r~~c~C~~~d~~~~eAiqqC~e  332 (504)
T KOG0624|consen  264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR-----------YNGFRVLCTCYREDEQFGEAIQQCKE  332 (504)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee-----------eeeeheeeecccccCCHHHHHHHHHH
Confidence            3567778888899999999999999999999998766532221           22333468899999999999999999


Q ss_pred             HHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036950          365 VLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKIN  421 (469)
Q Consensus       365 al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~  421 (469)
                      +|+++                       ++||++|++++++|.     .++..++++++..++..+++   |.|+++...
T Consensus       333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~-----~~reGle~Akrlkkqs~kRD---YYKILGVkR  404 (504)
T KOG0624|consen  333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT-----RAREGLERAKRLKKQSGKRD---YYKILGVKR  404 (504)
T ss_pred             HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHHHHhccch---HHHHhhhcc
Confidence            99998                       789999999999999     99999999999887776665   999999999


Q ss_pred             hchhhhhhccccccC--CCcccccccc-cccchhhhhheeccccccccc
Q 036950          422 KLEQAKSASSMAKQE--PAPMVLIARH-DTSIKLSMIAIESTRTVLISP  467 (469)
Q Consensus       422 ~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  467 (469)
                      +..+.++.|+++|..  |||++++.+. ....+.+||.|+++++||.||
T Consensus       405 nAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~  453 (504)
T KOG0624|consen  405 NASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDP  453 (504)
T ss_pred             cccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCH
Confidence            999999999988754  9999999766 667899999999999999998

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.49  E-value=7.2e-14  Score=132.14  Aligned_cols=97  Identities=32%  Similarity=0.490  Sum_probs=89.3

Q ss_pred             HHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHH
Q 036950          284 QEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCS  363 (469)
Q Consensus       284 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~  363 (469)
                      ++.+..+..+|++||.|||+|+|.+||.||++++...++.               ..+|.|||++|+|++.|..|..||+
T Consensus        91 ~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N---------------pV~~~NRA~AYlk~K~FA~AE~DC~  155 (536)
T KOG4648|consen   91 QQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN---------------PVYHINRALAYLKQKSFAQAEEDCE  155 (536)
T ss_pred             HHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCC---------------ccchhhHHHHHHHHHHHHHHHHhHH
Confidence            5678889999999999999999999999999999998876               5678999999999999999999999


Q ss_pred             HHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 036950          364 KVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKE  400 (469)
Q Consensus       364 ~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~  400 (469)
                      .||.+|                       .+|++.+|.++|++.     ++++.++.+..
T Consensus       156 ~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~-----ELkK~~a~i~S  210 (536)
T KOG4648|consen  156 AAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI-----ELKKSLARINS  210 (536)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH-----HHHHHHHHhcc
Confidence            999999                       679999999999999     88888777765

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=1.2e-12  Score=130.77  Aligned_cols=94  Identities=38%  Similarity=0.492  Sum_probs=86.9

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+...|+.||++|+.|+|..|+++|++||...|.+               ..+|+|||+||+++++|..|+.||+++|++
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D---------------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL  421 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED---------------ARLYSNRAACYLKLGEYPEALKDAKKCIEL  421 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch---------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            47788899999999999999999999999988776               889999999999999999999999999999


Q ss_pred             c-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          369 D-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       369 d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                      +                       ++.|++++++||++.     ++...+.++...+
T Consensus       422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~-----e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA-----EAIDGYRRCVEAQ  473 (539)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH-----HHHHHHHHHHHHh
Confidence            9                       678999999999999     8888888887754

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=3.3e-12  Score=120.75  Aligned_cols=71  Identities=35%  Similarity=0.479  Sum_probs=66.2

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      +.|+.+|+.||.+||.++|..|+.+|+++|..-..+++           +.+.||+|||+|++.+|+|..||.||.+|+.
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----------lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~  147 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----------LNAVLYTNRAAAQLYLGNYRSALNDCSAALK  147 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            38999999999999999999999999999998776654           4599999999999999999999999999999


Q ss_pred             hc
Q 036950          368 LD  369 (469)
Q Consensus       368 ~d  369 (469)
                      ++
T Consensus       148 ~~  149 (390)
T KOG0551|consen  148 LK  149 (390)
T ss_pred             cC
Confidence            99

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.38  E-value=6e-13  Score=116.82  Aligned_cols=70  Identities=24%  Similarity=0.494  Sum_probs=65.6

Q ss_pred             CCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCC
Q 036950           66 NPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRP  135 (469)
Q Consensus        66 ~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~  135 (469)
                      .++.|+.|.+||++++.||++|++|    .|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||+.+..
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~~   77 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSPD   77 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence            5789999999999999999999987    689999999999999999999999999999999999999987653

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=4.5e-12  Score=125.16  Aligned_cols=77  Identities=31%  Similarity=0.462  Sum_probs=72.0

Q ss_pred             ccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHH
Q 036950          278 SWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQ  357 (469)
Q Consensus       278 ~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~  357 (469)
                      .-.|+.+++++.|..+|++||.+|+.|+|++||++|+.||.+++..               ...|+|||+||..+|+|++
T Consensus       103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~  167 (606)
T KOG0547|consen  103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEK  167 (606)
T ss_pred             hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHH
Confidence            3457889999999999999999999999999999999999999864               5689999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 036950          358 AEKLCSKVLELD  369 (469)
Q Consensus       358 ai~~~~~al~~d  369 (469)
                      ++++|.+||+++
T Consensus       168 Vied~TkALEl~  179 (606)
T KOG0547|consen  168 VIEDCTKALELN  179 (606)
T ss_pred             HHHHHHHHhhcC
Confidence            999999999999

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.2e-12  Score=114.34  Aligned_cols=72  Identities=25%  Similarity=0.456  Sum_probs=67.1

Q ss_pred             CCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCC
Q 036950           66 NPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPAT  137 (469)
Q Consensus        66 ~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~  137 (469)
                      .+.+||.|.++|++++.||++|++|    .|+.|.+|.|++++||++||.||.+|++..|.|||+.|||++.+..+
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~lv   77 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPDLV   77 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChHHe
Confidence            4688999999999999999999988    59999999999999999999999999999999999999999876543

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.35  E-value=1.3e-12  Score=117.81  Aligned_cols=71  Identities=25%  Similarity=0.389  Sum_probs=66.6

Q ss_pred             CCCCCCEEEEEEEEEecCCcEEecc---ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCC
Q 036950           66 NPKDLDEVFVKYEVRLEDGTLISKS---DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPA  136 (469)
Q Consensus        66 ~~~~gd~V~i~y~~~~~~G~~~~~t---~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~  136 (469)
                      +++++++|+++|++++.+|++|++|   .|+.|.+|.++++|+|+++|.+|++|++..|.|||+.|||++....
T Consensus         2 kI~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~l   75 (196)
T PRK10737          2 KVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENL   75 (196)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHH
Confidence            4678999999999999999999988   8999999999999999999999999999999999999999987643

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.27  E-value=1.4e-11  Score=108.14  Aligned_cols=63  Identities=27%  Similarity=0.472  Sum_probs=57.7

Q ss_pred             eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCC
Q 036950          186 MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCS  249 (469)
Q Consensus       186 ~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~  249 (469)
                      +++ ++++.||++||+| +.++.|+.|.+|.+++++||+.+|.+|++|+++.|.|||++|||+..
T Consensus        12 ~v~Y~~~~~dG~v~dst-~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d   75 (156)
T PRK15095         12 LVHFTLKLDDGSTAEST-RNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS   75 (156)
T ss_pred             EEEEEEEeCCCCEEEEC-CCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            455 8889999999998 66679999999999999999999999999999999999999999754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.07  E-value=1.6e-09  Score=117.23  Aligned_cols=97  Identities=26%  Similarity=0.339  Sum_probs=83.7

Q ss_pred             CCCCCceEEEEEEEeeeeecccccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 036950          256 IVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAK  335 (469)
Q Consensus       256 ~ip~~~~l~f~vel~~~~~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~  335 (469)
                      .+|++.++....++..+. ....|.|+.+++...|..+|+.||.+|+.|+|.+|+..|+++|.+.+.             
T Consensus        94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-------------  159 (615)
T TIGR00990        94 TAPKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-------------  159 (615)
T ss_pred             CCCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-------------
Confidence            356666666666665544 356799999999999999999999999999999999999999997652             


Q ss_pred             HHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          336 VLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       336 ~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                         ...|+|+|.||+++|+|++|+.+|++||+++
T Consensus       160 ---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~  190 (615)
T TIGR00990       160 ---PVYYSNRAACHNALGDWEKVVEDTTAALELD  190 (615)
T ss_pred             ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence               2369999999999999999999999999998

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2.4e-10  Score=103.71  Aligned_cols=100  Identities=27%  Similarity=0.381  Sum_probs=79.9

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..++++++.||.||..++|..|+.+|++||..-|..               ++.|.|+|+||+|+++|+.+..+|.+||+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~---------------~~Y~tnralchlk~~~~~~v~~dcrralq   72 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV---------------ASYYTNRALCHLKLKHWEPVEEDCRRALQ   72 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCc---------------chhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence            348899999999999999999999999999977654               77899999999999999999999999999


Q ss_pred             hc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          368 LD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       368 ~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                      ++                       +..|++|+.+--+.......++-++|..++++.
T Consensus        73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~  130 (284)
T KOG4642|consen   73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKR  130 (284)
T ss_pred             cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCc
Confidence            99                       566777755422111111226777777776643

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=1.7e-09  Score=94.63  Aligned_cols=60  Identities=32%  Similarity=0.441  Sum_probs=55.3

Q ss_pred             EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCC
Q 036950          189 WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCS  249 (469)
Q Consensus       189 ~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~  249 (469)
                      ++++.||++||+| .....|+.|.+|.+++++|||.||.+|.+|++..|.|||+.|||...
T Consensus        14 ~~~~~dg~v~Dtt-~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~   73 (174)
T COG1047          14 TLKVEDGEVVDTT-DENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD   73 (174)
T ss_pred             EEEecCCcEEEcc-cccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence            8899999999998 33467999999999999999999999999999999999999999753

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=3.4e-10  Score=108.46  Aligned_cols=136  Identities=27%  Similarity=0.414  Sum_probs=117.9

Q ss_pred             ccCC-ChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHH---H-HHHHHHHHHHhHhHHHHHHHHh
Q 036950          278 SWDM-NTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDE---E-KQQAKVLKITCNLNNAACKLKL  352 (469)
Q Consensus       278 ~~~l-~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e---~-~~~~~~l~~~~~~N~a~~~~kl  352 (469)
                      .|.+ +....++.++..|+.||..|++++|..|...|.++++++...+.....   . +..+..++..++.|+|+|-+|+
T Consensus       209 ~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~  288 (372)
T KOG0546|consen  209 SWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKV  288 (372)
T ss_pred             cccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccc
Confidence            4444 445678889999999999999999999999999999999853222211   1 3457788899999999999999


Q ss_pred             hCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950          353 KEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD  409 (469)
Q Consensus       353 ~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e  409 (469)
                      +.|..|+..|..+++.+                       +++++.+....|++.     ++.+++...+++.+++++++
T Consensus       289 ~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~-----~i~~~~~~~~~~~~~~~~~~  363 (372)
T KOG0546|consen  289 KGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK-----AIEEELENVRQKKKQYNRKQ  363 (372)
T ss_pred             cCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH-----HHHHHHHHhhhHHHHHHHHH
Confidence            99999999999999977                       788999999999999     99999999999999999999


Q ss_pred             HHHHHHhhh
Q 036950          410 VQFYGNIFA  418 (469)
Q Consensus       410 ~~~~~~mf~  418 (469)
                      ++.+.+||+
T Consensus       364 ~~~~~k~~s  372 (372)
T KOG0546|consen  364 KKALSKMFS  372 (372)
T ss_pred             HHHHHhhcC
Confidence            999999984

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.96  E-value=5.1e-09  Score=105.21  Aligned_cols=96  Identities=23%  Similarity=0.296  Sum_probs=87.3

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..++.+|+.+|..++|..|+..|.+||...+.+               ..+|.|+|.||+++|+|++|+.+|++||+++
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---------------AELYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4467899999999999999999999999988765               6689999999999999999999999999998


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY  405 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~  405 (469)
                                             +..|+++++++|++.     .+...+..+..+++..
T Consensus        67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~-----~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS-----RFTKLIKECDEKIAEE  120 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHhh
Confidence                                   678999999999999     9999999988888544

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=98.94  E-value=3.1e-09  Score=95.93  Aligned_cols=60  Identities=17%  Similarity=0.295  Sum_probs=54.5

Q ss_pred             EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCC
Q 036950          189 WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS  250 (469)
Q Consensus       189 ~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~  250 (469)
                      +.++.+|++||+| +. ..|++|.+|.++++||||.+|.+|.+|++..|.|+|+.|||+...
T Consensus        14 ~l~~~dG~v~dst-~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~   73 (196)
T PRK10737         14 QVRTEDGVLVDES-PV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (196)
T ss_pred             EEEeCCCCEEEec-CC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            6777899999998 33 689999999999999999999999999999999999999998543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.93  E-value=2e-09  Score=81.16  Aligned_cols=65  Identities=28%  Similarity=0.390  Sum_probs=59.4

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh-CHHHHHHHHHHHHhh
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK-EYKQAEKLCSKVLEL  368 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~-~~~~ai~~~~~al~~  368 (469)
                      |..+...|+.++..|+|.+|+..|++|+++.+..               ..+|+|+|.||.+++ +|.+|+.++++||++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            6678899999999999999999999999987754               779999999999999 799999999999976


Q ss_pred             c
Q 036950          369 D  369 (469)
Q Consensus       369 d  369 (469)
                      +
T Consensus        68 ~   68 (69)
T PF13414_consen   68 D   68 (69)
T ss_dssp             S
T ss_pred             C
Confidence            4

...

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=6e-09  Score=104.68  Aligned_cols=90  Identities=27%  Similarity=0.330  Sum_probs=83.5

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      |..+|++||..|..|+|..|+.+|+.||.+.|..               +.+|+||++||.++++|.+|+.+..+.++++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n---------------hvlySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN---------------HVLYSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCc---------------cchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            5678999999999999999999999999988764               8899999999999999999999999999998


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK  399 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  399 (469)
                                             +..|.+.|+.+|+|+     .+...|..+.
T Consensus        67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~-----~L~~gl~~a~  114 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNK-----QLKTGLAQAY  114 (539)
T ss_pred             CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchH-----HHHHhHHHhh
Confidence                                   678999999999999     8888888887

>TIGR00115 tig trigger factor

Probab=98.83  E-value=1.5e-08  Score=103.89  Aligned_cols=98  Identities=16%  Similarity=0.244  Sum_probs=81.9

Q ss_pred             CCCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCC
Q 036950           66 NPKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAV  143 (469)
Q Consensus        66 ~~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~i  143 (469)
                      .+..||.|.++|+++. +|..++++  .++.|.+|.+.+++||+++|.||++|+++.|.+++...|+..+.         
T Consensus       146 ~~~~gD~V~v~~~~~~-dg~~~~~~~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~---------  215 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI-DGEAFEGGKAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL---------  215 (408)
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC---------
Confidence            5789999999999986 89999876  88999999999999999999999999999999998878876443         


Q ss_pred             CCCceEEEeEeeeeeccccccccchhhhhhh
Q 036950          144 PSNANLHITLEMVSWKTVSDITKDKKVLKKI  174 (469)
Q Consensus       144 p~~~~l~~~v~l~~~~~~~dv~~d~~l~k~i  174 (469)
                       +|.++.|.|+|.++....-..-+..+.+.+
T Consensus       216 -~gk~~~f~v~i~~I~~~~~peldDefak~~  245 (408)
T TIGR00115       216 -AGKEATFKVTVKEVKEKELPELDDEFAKEL  245 (408)
T ss_pred             -CCCeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence             578999999999997743333345555553

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.82  E-value=6.1e-09  Score=103.82  Aligned_cols=98  Identities=23%  Similarity=0.269  Sum_probs=90.4

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .|+.+|+++|.+|+.+.|..|+..|++||++-++.               +..+.|||++|+|.++|..|++||.+||++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc---------------a~~~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNC---------------AIYFANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc---------------eeeechhhhhheeechhhhHHHHHHhhhhc
Confidence            47788999999999999999999999999988766               778899999999999999999999999999


Q ss_pred             c-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          369 D-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       369 d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                      |                       +.+|++...+.|++.     .+.+.+..++...+++.
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~-----~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP-----DATRKIDECNKIVSEEK  123 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH-----HHHHHHHHHHHHHHHHh
Confidence            9                       678999999999999     99999999998887654

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.8e-08  Score=102.68  Aligned_cols=97  Identities=18%  Similarity=0.259  Sum_probs=80.7

Q ss_pred             CCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCCC
Q 036950           67 PKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVP  144 (469)
Q Consensus        67 ~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~ip  144 (469)
                      ++.||.|+|+|.|+. ||..|.+.  +.+.+.+|+|+++|||+.+|.||+.|++..|.+.....|.....          
T Consensus       158 a~~gD~v~IDf~g~i-Dg~~fegg~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L----------  226 (441)
T COG0544         158 AENGDRVTIDFEGSV-DGEEFEGGKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL----------  226 (441)
T ss_pred             cccCCEEEEEEEEEE-cCeeccCccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh----------
Confidence            899999999999975 99999876  89999999999999999999999999999988877777776554          


Q ss_pred             CCceEEEeEeeeeeccccccccchhhhhhh
Q 036950          145 SNANLHITLEMVSWKTVSDITKDKKVLKKI  174 (469)
Q Consensus       145 ~~~~l~~~v~l~~~~~~~dv~~d~~l~k~i  174 (469)
                      +|.+..|.|.|..+....-..-+..+.+.+
T Consensus       227 aGK~a~F~V~vkeVk~~elpEldDEfAk~~  256 (441)
T COG0544         227 AGKEATFKVKVKEVKKRELPELDDEFAKKL  256 (441)
T ss_pred             CCCceEEEEEEEEEeecCCCCCCHHHHHhc
Confidence            578899999999988744443444444443

>PRK01490 tig trigger factor; Provisional

Probab=98.74  E-value=4.9e-08  Score=101.00  Aligned_cols=97  Identities=16%  Similarity=0.240  Sum_probs=80.6

Q ss_pred             CCCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCC
Q 036950           66 NPKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAV  143 (469)
Q Consensus        66 ~~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~i  143 (469)
                      .++.||.|+++|++.. +|..|+++  .++.|.+|.+.+++||+++|.||++|+++.|.+++...|+....         
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l---------  226 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGGKAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL---------  226 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCCCCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC---------
Confidence            5799999999999997 89998866  88999999999999999999999999999999988777866443         


Q ss_pred             CCCceEEEeEeeeeeccccccccchhhhhh
Q 036950          144 PSNANLHITLEMVSWKTVSDITKDKKVLKK  173 (469)
Q Consensus       144 p~~~~l~~~v~l~~~~~~~dv~~d~~l~k~  173 (469)
                       +|.++.|.|+|.++....-..-+..+.+.
T Consensus       227 -agk~~~f~v~v~~V~~~~~pel~Defak~  255 (435)
T PRK01490        227 -AGKEATFKVTVKEVKEKELPELDDEFAKK  255 (435)
T ss_pred             -CCCeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence             57889999999999764333334455543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.4e-07  Score=92.25  Aligned_cols=72  Identities=28%  Similarity=0.365  Sum_probs=66.9

Q ss_pred             hHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHH
Q 036950          283 TQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLC  362 (469)
Q Consensus       283 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~  362 (469)
                      ..+-...|+..+++||.+++.++|..|+..|+.||+.++.+               +..|.|+|+|++.+++|++|+.++
T Consensus        42 ~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---------------a~yy~nRAa~~m~~~~~~~a~~da  106 (486)
T KOG0550|consen   42 SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN---------------ASYYSNRAATLMMLGRFEEALGDA  106 (486)
T ss_pred             cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc---------------hhhhchhHHHHHHHHhHhhcccch
Confidence            35677889999999999999999999999999999999866               778999999999999999999999


Q ss_pred             HHHHhhc
Q 036950          363 SKVLELD  369 (469)
Q Consensus       363 ~~al~~d  369 (469)
                      ++.++++
T Consensus       107 r~~~r~k  113 (486)
T KOG0550|consen  107 RQSVRLK  113 (486)
T ss_pred             hhheecC
Confidence            9999988

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.55  E-value=1.1e-06  Score=76.62  Aligned_cols=90  Identities=19%  Similarity=0.221  Sum_probs=78.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      ...|..+++.|+|.+|+..|.+++...+.+               ...|.|+|.++.++|+|++|+..++++++++    
T Consensus        28 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~   92 (144)
T PRK15359         28 YASGYASWQEGDYSRAVIDFSWLVMAQPWS---------------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP   92 (144)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            457999999999999999999999987765               6789999999999999999999999999988    


Q ss_pred             -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                                         ...|++|++++|++.     .....+..++..+.
T Consensus        93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~-----~~~~~~~~~~~~l~  140 (144)
T PRK15359         93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA-----SWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHHH
Confidence                               678999999999998     77766666655543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=1e-06  Score=80.72  Aligned_cols=236  Identities=18%  Similarity=0.191  Sum_probs=151.0

Q ss_pred             CCceEEEEEecCCcc-CCCCCCCEEEEEEEEEec--CCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEE
Q 036950           50 DGGIFKKILVEGKKW-ENPKDLDEVFVKYEVRLE--DGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLT  122 (469)
Q Consensus        50 d~g~~~~i~~~G~g~-~~~~~gd~V~i~y~~~~~--~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~  122 (469)
                      -.|+.++|+..|+|. ....+|..|++||.....  .++++|+|    +|+.+.+|...-.+-|+..|.+|.++|.+.|+
T Consensus         9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~   88 (329)
T KOG0545|consen    9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQFW   88 (329)
T ss_pred             chhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHhh
Confidence            368999999999983 234799999999998763  56789988    89999999999999999999999999999987


Q ss_pred             EcCC--------------ccccCCCCC-------C---C-----C--CC-CCCCCCceEEEeEeeeeeccccc-------
Q 036950          123 VKPQ--------------YAFGKNGRP-------A---T-----G--DE-DAVPSNANLHITLEMVSWKTVSD-------  163 (469)
Q Consensus       123 ip~~--------------~ayg~~~~~-------~---~-----~--~~-~~ip~~~~l~~~v~l~~~~~~~d-------  163 (469)
                      |.-.              .+-|.....       .   .     +  .. .....-++|+|.++++++..+.+       
T Consensus        89 ~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~Wq  168 (329)
T KOG0545|consen   89 CDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQ  168 (329)
T ss_pred             hhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcccccc
Confidence            7532              111211100       0   0     0  00 00112357999999999887654       


Q ss_pred             cccchhhhhhhhhcCCCCCCCceEEEEEecCCcEEEecCCCCCCcEEEEcCCC-ccchhHH---HHHhccccCcEEEEEE
Q 036950          164 ITKDKKVLKKILKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEE-QVIDGLD---RAVKTMKKGEVALVTI  239 (469)
Q Consensus       164 v~~d~~l~k~il~~G~g~~~p~~V~~~~l~~g~~~d~~~~~~~~p~~~~lG~~-~v~~gle---~~L~~m~~Ge~~~~~i  239 (469)
                      ++++.......+-.+.|.               .+            |..|+. .......   .||..+...|+     
T Consensus       169 lsddeKmkav~~l~q~GN---------------~l------------fk~~~ykEA~~~YreAi~~l~~L~lkEk-----  216 (329)
T KOG0545|consen  169 LSDDEKMKAVPVLHQEGN---------------RL------------FKLGRYKEASSKYREAIICLRNLQLKEK-----  216 (329)
T ss_pred             CCchHhhhhhHHHHHhhh---------------hh------------hhhccHHHHHHHHHHHHHHHHHHHhccC-----
Confidence            234444433333334332               11            111110 0011111   22222222221     


Q ss_pred             cCCCccCCCCCcccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 036950          240 EPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNY  319 (469)
Q Consensus       240 ~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~  319 (469)
                                         |+.              +++.+|.   + ...--+.+-...+.+.++|-+++...+..|+.
T Consensus       217 -------------------P~e--------------~eW~eLd---k-~~tpLllNy~QC~L~~~e~yevleh~seiL~~  259 (329)
T KOG0545|consen  217 -------------------PGE--------------PEWLELD---K-MITPLLLNYCQCLLKKEEYYEVLEHCSEILRH  259 (329)
T ss_pred             -------------------CCC--------------hHHHHHH---H-hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence                               000              0111110   0 01112346778889999999999999999998


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          320 IGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       320 ~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+..               .++|+-||-++...=+-.+|..|+.++|++|
T Consensus       260 ~~~n---------------vKA~frRakAhaa~Wn~~eA~~D~~~vL~ld  294 (329)
T KOG0545|consen  260 HPGN---------------VKAYFRRAKAHAAVWNEAEAKADLQKVLELD  294 (329)
T ss_pred             CCch---------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence            7765               8889999999999999999999999999999

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.42  E-value=3.6e-06  Score=72.03  Aligned_cols=92  Identities=24%  Similarity=0.267  Sum_probs=77.6

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-  369 (469)
                      ..+...|..+++.|+|.+|+..|++++...+.+               ..++.|+|.||+++++|.+|+..+++++.++ 
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---------------SRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            345689999999999999999999999977654               6688999999999999999999999999887 


Q ss_pred             ----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          370 ----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       370 ----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                                            ...|+++++++|++.     .......++...+
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~  132 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENP-----EYSELKERAEAML  132 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-----hHHHHHHHHHHHH
Confidence                                  567888899999988     6666666555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.36  E-value=2.1e-06  Score=66.12  Aligned_cols=73  Identities=21%  Similarity=0.293  Sum_probs=60.5

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..+..+.+.|..++..|+|++|+..|++|+.+......        .....+.++.|+|.||..+|+|++|+..+++|++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34667789999999999999999999999998543321        2334588999999999999999999999999997


Q ss_pred             h
Q 036950          368 L  368 (469)
Q Consensus       368 ~  368 (469)
                      +
T Consensus        75 i   75 (78)
T PF13424_consen   75 I   75 (78)
T ss_dssp             H
T ss_pred             h
Confidence            5

...

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.28  E-value=5.4e-07  Score=86.32  Aligned_cols=87  Identities=23%  Similarity=0.294  Sum_probs=78.9

Q ss_pred             ChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHH
Q 036950          282 NTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKL  361 (469)
Q Consensus       282 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~  361 (469)
                      ..+|.+++|...|-.+.+++..|.++.|+..|++||.+-+..               +.+|.+|+.+++|++.+..||++
T Consensus       106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~---------------a~l~~kr~sv~lkl~kp~~airD  170 (377)
T KOG1308|consen  106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL---------------AILYAKRASVFLKLKKPNAAIRD  170 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch---------------hhhcccccceeeeccCCchhhhh
Confidence            457899999999999999999999999999999999987654               77899999999999999999999


Q ss_pred             HHHHHhhc-----------------------HHHHHHHHhhCCCC
Q 036950          362 CSKVLELD-----------------------KLDIKKALEIDPDN  383 (469)
Q Consensus       362 ~~~al~~d-----------------------~~~~~~al~l~p~~  383 (469)
                      |+.||+++                       .+||..|++++-+.
T Consensus       171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE  215 (377)
T KOG1308|consen  171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDE  215 (377)
T ss_pred             hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccH
Confidence            99999998                       67899998886553

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.23  E-value=9.3e-06  Score=83.21  Aligned_cols=63  Identities=19%  Similarity=0.181  Sum_probs=39.1

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+.+.||.+...+.++.|.+.|.+|+...+.               .+..++|+|..|-.+|++++|+.++++||.++
T Consensus       356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~---------------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~  418 (966)
T KOG4626|consen  356 AMNNLGNIYREQGKIEEATRLYLKALEVFPE---------------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK  418 (966)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHhhChh---------------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            3344555555555555555555555554443               35667777777777777777777777777776

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.21  E-value=2.8e-05  Score=67.60  Aligned_cols=65  Identities=9%  Similarity=0.146  Sum_probs=59.0

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+.+...|..++..|+|++|.+.|+-.+.+.+++               ..-|.|+++|+-.+|+|.+||..+.+|+.++
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---------------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~   99 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---------------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIK   99 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3456789999999999999999999999988876               7789999999999999999999999998776

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.19  E-value=4.4e-06  Score=62.42  Aligned_cols=52  Identities=33%  Similarity=0.463  Sum_probs=46.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          300 LFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       300 ~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      +++.|+|++|+..|++++...|.+               ..++.++|.||+++|+|++|...+++++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDN---------------PEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTS---------------HHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            578999999999999999998876               6678899999999999999998888776

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.14  E-value=6.7e-06  Score=60.92  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=50.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..|..+++.|+|++|+..|++++...+.+               ..++.++|.|++.+|+|++|+..++++++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDN---------------PEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            57899999999999999999999977654               77899999999999999999988877763

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.13  E-value=1.4e-05  Score=60.63  Aligned_cols=62  Identities=26%  Similarity=0.397  Sum_probs=54.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHH
Q 036950          297 GNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKA  376 (469)
Q Consensus       297 Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~a  376 (469)
                      .+.+++.++|+.|+..+++++.+.|.+               ..++.++|.||.++|+|.+|+.++++++          
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~g~~~~A~~~l~~~l----------   56 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDD---------------PELWLQRARCLFQLGRYEEALEDLERAL----------   56 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCccc---------------chhhHHHHHHHHHhccHHHHHHHHHHHH----------
Confidence            467899999999999999999998765               6788999999999999999988777766          


Q ss_pred             HhhCCCCC
Q 036950          377 LEIDPDNS  384 (469)
Q Consensus       377 l~l~p~~~  384 (469)
                       +++|++.
T Consensus        57 -~~~p~~~   63 (73)
T PF13371_consen   57 -ELSPDDP   63 (73)
T ss_pred             -HHCCCcH
Confidence             6778776

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.10  E-value=8.5e-05  Score=61.84  Aligned_cols=71  Identities=21%  Similarity=0.144  Sum_probs=65.5

Q ss_pred             HHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHH
Q 036950          284 QEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCS  363 (469)
Q Consensus       284 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~  363 (469)
                      ..-++....+--+|..+-..|+.+.|+++|.++|.++|..               .++|+|||++|--.++.++|+++.+
T Consensus        37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r---------------aSayNNRAQa~RLq~~~e~ALdDLn  101 (175)
T KOG4555|consen   37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPER---------------ASAYNNRAQALRLQGDDEEALDDLN  101 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc---------------hHhhccHHHHHHHcCChHHHHHHHH
Confidence            4567888888889999999999999999999999998765               7899999999999999999999999


Q ss_pred             HHHhhc
Q 036950          364 KVLELD  369 (469)
Q Consensus       364 ~al~~d  369 (469)
                      +||++-
T Consensus       102 ~AleLa  107 (175)
T KOG4555|consen  102 KALELA  107 (175)
T ss_pred             HHHHhc
Confidence            999997

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.09  E-value=1.9e-05  Score=75.84  Aligned_cols=81  Identities=27%  Similarity=0.320  Sum_probs=72.9

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      -+++..+.|++++.+++|.+|+..|..|+...+..               -..++.||.+|+.+|+-.-|+.+.++||++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------------Y~aifrRaT~yLAmGksk~al~Dl~rVlel  101 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------------YQAIFRRATVYLAMGKSKAALQDLSRVLEL  101 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------------HHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence            35677899999999999999999999999976643               567789999999999999999999999998


Q ss_pred             c-----------------------HHHHHHHHhhCCCCC
Q 036950          369 D-----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       369 d-----------------------~~~~~~al~l~p~~~  384 (469)
                      .                       ..||+.+|+.+|++.
T Consensus       102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen  102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence            7                       679999999999877

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.08  E-value=2.6e-05  Score=78.52  Aligned_cols=70  Identities=21%  Similarity=0.222  Sum_probs=60.7

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..+..+.+.|+.||+.|+|++|+..|++||.+.+++..            ...+|+|+|.||.++|++++|+.++++||+
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae------------A~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE------------AQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34566779999999999999999999999999886521            125699999999999999999999999999


Q ss_pred             hc
Q 036950          368 LD  369 (469)
Q Consensus       368 ~d  369 (469)
                      +.
T Consensus       141 ls  142 (453)
T PLN03098        141 DY  142 (453)
T ss_pred             hc
Confidence            74

>TIGR00115 tig trigger factor

Probab=98.07  E-value=0.00028  Score=72.47  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=63.0

Q ss_pred             EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEE
Q 036950          189 WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVE  268 (469)
Q Consensus       189 ~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ve  268 (469)
                      .+.. +|..|+++   ...++.|.+|.+.+++||+.+|.+|++|++..|.++....|+..+.        +|.++.|.|+
T Consensus       158 ~~~~-dg~~~~~~---~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~--------~gk~~~f~v~  225 (408)
T TIGR00115       158 EGFI-DGEAFEGG---KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL--------AGKEATFKVT  225 (408)
T ss_pred             EEEE-CCEECcCC---CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC--------CCCeEEEEEE
Confidence            5544 88888875   2579999999999999999999999999999999987777775432        5789999999


Q ss_pred             Eeeeeec
Q 036950          269 LVSFIKE  275 (469)
Q Consensus       269 l~~~~~~  275 (469)
                      |.++.+.
T Consensus       226 i~~I~~~  232 (408)
T TIGR00115       226 VKEVKEK  232 (408)
T ss_pred             EEEeccC
Confidence            9999854

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.92  E-value=6.4e-05  Score=73.75  Aligned_cols=80  Identities=20%  Similarity=0.145  Sum_probs=71.8

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +.-+-+.|..+...|++..|+..|++|+...+..               ..+|+|+|.+|..+|+|++|+..++++|+++
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~  128 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDM---------------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD  128 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            4557789999999999999999999999987765               6788999999999999999999999999988


Q ss_pred             -----------------------HHHHHHHHhhCCCCC
Q 036950          370 -----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~  384 (469)
                                             .++|+++++++|++.
T Consensus       129 P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        129 PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence                                   678999999999886

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.91  E-value=7.1e-05  Score=67.18  Aligned_cols=73  Identities=21%  Similarity=0.142  Sum_probs=61.4

Q ss_pred             HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950          285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK  364 (469)
Q Consensus       285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~  364 (469)
                      .+...+..+...|..++..|+|.+|+..|.+++...+...            -...++.|+|.||.++|+|++|+..+.+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~la~~~~~~g~~~~A~~~~~~   97 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN------------DRSYILYNMGIIYASNGEHDKALEYYHQ   97 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4556677788999999999999999999999998754321            0245789999999999999999999999


Q ss_pred             HHhhc
Q 036950          365 VLELD  369 (469)
Q Consensus       365 al~~d  369 (469)
                      +++++
T Consensus        98 al~~~  102 (172)
T PRK02603         98 ALELN  102 (172)
T ss_pred             HHHhC
Confidence            99876

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.90  E-value=0.00012  Score=60.55  Aligned_cols=65  Identities=14%  Similarity=0.149  Sum_probs=52.8

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+...|..+++.|+|.+|+..|.+++...+..+            ....++.+++.|+++.++|+.|+..++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~   68 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKST------------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK   68 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc------------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            456789999999999999999999998765431            12456788999999999999999988888753

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.89  E-value=3.6e-05  Score=67.02  Aligned_cols=65  Identities=11%  Similarity=0.054  Sum_probs=59.2

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ...+...|..+.+.|+|++|+..|.+|+...+.+               ...++|+|.|+.++|++++|+..++++|+++
T Consensus        58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---------------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDASH---------------PEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3445689999999999999999999999988766               6688999999999999999999999999987

>PRK01490 tig trigger factor; Provisional

Probab=97.86  E-value=0.0015  Score=67.80  Aligned_cols=75  Identities=16%  Similarity=0.244  Sum_probs=61.6

Q ss_pred             EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEE
Q 036950          189 WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVE  268 (469)
Q Consensus       189 ~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ve  268 (469)
                      .+.. +|..|+++   ...++.|.+|.+.+++||+.+|.+|++|++..|.++....|+....        +|.++.|.|+
T Consensus       169 ~~~~-~g~~~~~~---~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l--------agk~~~f~v~  236 (435)
T PRK01490        169 VGSI-DGEEFEGG---KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL--------AGKEATFKVT  236 (435)
T ss_pred             EEEE-CCEECcCC---CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC--------CCCeEEEEEE
Confidence            5554 88888765   2578999999999999999999999999999998877666755322        4678999999


Q ss_pred             Eeeeeec
Q 036950          269 LVSFIKE  275 (469)
Q Consensus       269 l~~~~~~  275 (469)
                      |.++...
T Consensus       237 v~~V~~~  243 (435)
T PRK01490        237 VKEVKEK  243 (435)
T ss_pred             EEEeccC
Confidence            9999854

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.84  E-value=6.9e-05  Score=77.05  Aligned_cols=100  Identities=18%  Similarity=0.231  Sum_probs=84.1

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      .-++.+-+.||.+-.+|++++|+..|..++++-+..               +-.|.|+|+|+...|+-..|..+|..||+
T Consensus       114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~f---------------ida~inla~al~~~~~~~~a~~~~~~alq  178 (966)
T KOG4626|consen  114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKF---------------IDAYINLAAALVTQGDLELAVQCFFEALQ  178 (966)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchh---------------hHHHhhHHHHHHhcCCCcccHHHHHHHHh
Confidence            456677789999999999999999999999976654               77899999999999999999999999999


Q ss_pred             hc---------------------------------------------------------HHHHHHHHhhCCCCCCcchHH
Q 036950          368 LD---------------------------------------------------------KLDIKKALEIDPDNSLEAGWG  390 (469)
Q Consensus       368 ~d---------------------------------------------------------~~~~~~al~l~p~~~~~~~~~  390 (469)
                      ++                                                         ++.|++|+++||+-.     +
T Consensus       179 lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~-----d  253 (966)
T KOG4626|consen  179 LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL-----D  253 (966)
T ss_pred             cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch-----H
Confidence            98                                                         678999999999988     7


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 036950          391 VRMEYKLLKEKVREYNK  407 (469)
Q Consensus       391 ~~~~l~~~~~~~~~~~~  407 (469)
                      +.-.|-.+-+..+...+
T Consensus       254 AYiNLGnV~ke~~~~d~  270 (966)
T KOG4626|consen  254 AYINLGNVYKEARIFDR  270 (966)
T ss_pred             HHhhHHHHHHHHhcchH
Confidence            77777666665555444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.83  E-value=0.00018  Score=78.10  Aligned_cols=64  Identities=19%  Similarity=0.145  Sum_probs=42.8

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|..++..|+|++|+..|.+++...+..               ...|.++|.++..+|+|++|+.+++++|+++
T Consensus       332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  395 (615)
T TIGR00990       332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRV---------------TQSYIKRASMNLELGDPDKAEEDFDKALKLN  395 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            345677889999999999999999999876644               2344455555555555555555555555544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.79  E-value=0.00017  Score=64.41  Aligned_cols=72  Identities=17%  Similarity=0.026  Sum_probs=59.7

Q ss_pred             HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950          286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV  365 (469)
Q Consensus       286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a  365 (469)
                      .-..+..+...|..++..++|+.|+..|.+|+...+...            ....++.|+|.+|.++|++++|+..|.+|
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~A   98 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------DRSYILYNIGLIHTSNGEHTKALEYYFQA   98 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344677788999999999999999999999998754210            12458899999999999999999999988


Q ss_pred             Hhhc
Q 036950          366 LELD  369 (469)
Q Consensus       366 l~~d  369 (469)
                      ++++
T Consensus        99 l~~~  102 (168)
T CHL00033         99 LERN  102 (168)
T ss_pred             HHhC
Confidence            8654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.74  E-value=0.00087  Score=63.67  Aligned_cols=66  Identities=12%  Similarity=0.145  Sum_probs=57.5

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+-..|..+++.|+|.+|+..|++.+...|..            +......+++|.||+++++|.+|+..+++.++.+
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            35678889999999999999999999988754            2335567899999999999999999999999987

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.74  E-value=0.00049  Score=63.07  Aligned_cols=100  Identities=28%  Similarity=0.294  Sum_probs=74.3

Q ss_pred             HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950          286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV  365 (469)
Q Consensus       286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a  365 (469)
                      .-+.+....+.|-.++..|++..|..-..+||+..|+.               ...|+=||..|.++|+.+.|-+.+++|
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~---------------~~a~~~~A~~Yq~~Ge~~~A~e~YrkA   95 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY---------------YLAHLVRAHYYQKLGENDLADESYRKA   95 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence            33456667789999999999999999999999988765               445555666666666666666666666


Q ss_pred             Hhhc-----------------------------------------------------------HHHHHHHHhhCCCCCCc
Q 036950          366 LELD-----------------------------------------------------------KLDIKKALEIDPDNSLE  386 (469)
Q Consensus       366 l~~d-----------------------------------------------------------~~~~~~al~l~p~~~~~  386 (469)
                      |.++                                                           .+.|+++|+++|++.  
T Consensus        96 lsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--  173 (250)
T COG3063          96 LSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--  173 (250)
T ss_pred             HhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--
Confidence            6665                                                           678999999999999  


Q ss_pred             chHHHHHHHHHHHHHHHHH
Q 036950          387 AGWGVRMEYKLLKEKVREY  405 (469)
Q Consensus       387 ~~~~~~~~l~~~~~~~~~~  405 (469)
                         ....++.+...+...+
T Consensus       174 ---~~~l~~a~~~~~~~~y  189 (250)
T COG3063         174 ---PALLELARLHYKAGDY  189 (250)
T ss_pred             ---hHHHHHHHHHHhcccc
Confidence               6666666665544444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.69  E-value=0.00027  Score=54.41  Aligned_cols=81  Identities=31%  Similarity=0.393  Sum_probs=62.2

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHH
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLD  372 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~  372 (469)
                      +...|..++..|+|.+|+..|.+++...+..               ..++.++|.|+...+++++|+..++.++      
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~------   61 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN---------------ADAYYNLAAAYYKLGKYEEALEDYEKAL------   61 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            4578999999999999999999999876543               2578899999999999999998887776      


Q ss_pred             HHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          373 IKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       373 ~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                           .+.|.+.     .+...+..+......
T Consensus        62 -----~~~~~~~-----~~~~~~~~~~~~~~~   83 (100)
T cd00189          62 -----ELDPDNA-----KAYYNLGLAYYKLGK   83 (100)
T ss_pred             -----hCCCcch-----hHHHHHHHHHHHHHh
Confidence                 4556665     455555444444433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.63  E-value=0.00079  Score=61.91  Aligned_cols=80  Identities=19%  Similarity=0.187  Sum_probs=63.1

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHH-HHhhC--HHHHHHHHHHHH
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACK-LKLKE--YKQAEKLCSKVL  366 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~-~kl~~--~~~ai~~~~~al  366 (469)
                      +..+...|..+...|+|..|+..|.+|+.+.+.+               ..+++|+|.|+ ...|+  +++|+..+++++
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~---------------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al  137 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN---------------AELYAALATVLYYQAGQHMTPQTREMIDKAL  137 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            3345678999999999999999999999988866               66788888874 66677  488888888888


Q ss_pred             hhc-----------------------HHHHHHHHhhCCCCC
Q 036950          367 ELD-----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       367 ~~d-----------------------~~~~~~al~l~p~~~  384 (469)
                      +++                       ...++++++++|.+.
T Consensus       138 ~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        138 ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            776                       456667777766655

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.58  E-value=0.00012  Score=46.42  Aligned_cols=30  Identities=27%  Similarity=0.421  Sum_probs=25.9

Q ss_pred             HhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          340 TCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       340 ~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+|+|+|.||+.+++|++|+.+|++||+++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            578999999999999999999999888654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.57  E-value=0.0003  Score=49.61  Aligned_cols=48  Identities=33%  Similarity=0.617  Sum_probs=39.2

Q ss_pred             hHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          341 CNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                      |+..+|.+++|+|+|..|..+|+.+|           +++|+|.     ++......++.++.+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL-----------~~eP~N~-----Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALL-----------EIEPDNR-----QAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHH-----------HHTTS-H-----HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHH-----------hhCCCcH-----HHHHHHHHHHHHHhc
Confidence            56789999999999999999988877           8999999     888888877776653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.53  E-value=0.0024  Score=60.04  Aligned_cols=68  Identities=21%  Similarity=0.267  Sum_probs=57.9

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..+++.|+|..|+..|.+++...+..+            .....++++|.||+++++|++|+..++++++.+
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~  100 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP------------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH  100 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            44567899999999999999999999999877542            224568899999999999999999999998765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.52  E-value=0.0011  Score=60.84  Aligned_cols=100  Identities=13%  Similarity=0.048  Sum_probs=81.8

Q ss_pred             hcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc------------
Q 036950          302 KAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD------------  369 (469)
Q Consensus       302 k~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d------------  369 (469)
                      ..++..+++..|.+++...+.+               ...|.++|.+|+.+++|++|+..++++++++            
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~---------------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~  115 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT  115 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3677788888999999887766               6789999999999999999999999999998            


Q ss_pred             --------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 036950          370 --------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINK  422 (469)
Q Consensus       370 --------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~  422 (469)
                                    .+.++++++++|++.     .+...+.........+.+... .|.+++.....
T Consensus       116 aL~~~~g~~~~~~A~~~l~~al~~dP~~~-----~al~~LA~~~~~~g~~~~Ai~-~~~~aL~l~~~  176 (198)
T PRK10370        116 VLYYQAGQHMTPQTREMIDKALALDANEV-----TALMLLASDAFMQADYAQAIE-LWQKVLDLNSP  176 (198)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhCCCCh-----hHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCC
Confidence                          456888999999999     888888888777666665553 46777665443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.52  E-value=0.0023  Score=59.01  Aligned_cols=103  Identities=16%  Similarity=0.185  Sum_probs=74.4

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+-..|..+|..|+|.+|+..|++.+...|..+-            ...+.+.+|.||++.++|..|+..+++.++..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            456778999999999999999999999998886532            24567899999999999999999999999876


Q ss_pred             -------------------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          370 -------------------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       370 -------------------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                                                           +..|+..++..|++.  -..+++..+..++.++.+..
T Consensus        73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~--y~~~A~~~l~~l~~~la~~e  144 (203)
T PF13525_consen   73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE--YAEEAKKRLAELRNRLAEHE  144 (203)
T ss_dssp             TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST--THHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch--HHHHHHHHHHHHHHHHHHHH
Confidence                                                 224666677788876  11145555556655555444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.52  E-value=0.0012  Score=74.47  Aligned_cols=88  Identities=3%  Similarity=-0.077  Sum_probs=60.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      ...|..+.+.|++++|+..|.+++...|..               ..+++|++.++..+|++++|+..++++++++    
T Consensus       613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---------------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~  677 (987)
T PRK09782        613 VARATIYRQRHNVPAAVSDLRAALELEPNN---------------SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP  677 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            345556666666666666666666655544               4577788888888888888888888888776    


Q ss_pred             -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 036950          370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEK  401 (469)
Q Consensus       370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~  401 (469)
                                         ...|++|++++|++.     .+......+...
T Consensus       678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a-----~i~~~~g~~~~~  723 (987)
T PRK09782        678 ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA-----LITPLTPEQNQQ  723 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc-----hhhhhhhHHHHH
Confidence                               567888888888887     666555544443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.49  E-value=0.00031  Score=61.18  Aligned_cols=63  Identities=16%  Similarity=0.016  Sum_probs=55.3

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      +.-+...|-.+-..|+|.+|+..|.+|+.+-+++               ...+.|+|.||+++|+...|...++.||.
T Consensus        69 ~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd---------------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363         69 FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA---------------PQAPWAAAECYLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------------chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4445678888889999999999999999988876               56789999999999999999998888874

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.48  E-value=0.0015  Score=60.07  Aligned_cols=89  Identities=18%  Similarity=0.151  Sum_probs=56.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      ...|..++..|++.+|+..|.+++...+..               ...+.|++.+|+.+|+|++|+..+.+++...    
T Consensus        69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~  133 (234)
T TIGR02521        69 LALALYYQQLGELEKAEDSFRRALTLNPNN---------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ  133 (234)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence            345556666666666666666666554332               3456777888888888888888888777632    


Q ss_pred             ---------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          370 ---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       370 ---------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                                           ...+.+++..+|++.     .+...+..+....
T Consensus       134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~  182 (234)
T TIGR02521       134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP-----ESLLELAELYYLR  182 (234)
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh-----HHHHHHHHHHHHc
Confidence                                 456777777777776     5555555554443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.47  E-value=0.00022  Score=74.13  Aligned_cols=111  Identities=17%  Similarity=0.138  Sum_probs=77.7

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC----------CCCHHHHHHHHHHH---------HHhHhHHHHHHH
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDS----------SFSDEEKQQAKVLK---------ITCNLNNAACKL  350 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~----------~~~~e~~~~~~~l~---------~~~~~N~a~~~~  350 (469)
                      -+.+...||.+--+++++.|++++++|+.+.+.+.          ...+|-.....-.+         -.+|+-+++.|+
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            34667899999999999999999999999888541          11122222222111         236777888999


Q ss_pred             HhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950          351 KLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY  405 (469)
Q Consensus       351 kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~  405 (469)
                      |+++|+.|..++.+|++++                       +.-+++|+.+||.|.     -.+=+...+...+..+
T Consensus       501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~-----l~~~~~~~il~~~~~~  573 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP-----LCKYHRASILFSLGRY  573 (638)
T ss_pred             ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHhhcch
Confidence            9999999999888888888                       566888888888887     4444444444443333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.41  E-value=0.0008  Score=67.77  Aligned_cols=63  Identities=19%  Similarity=0.205  Sum_probs=58.1

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+..+|..+++.|+|.+|+..|.+|+.+.+..               ..+|+++|.||+++|+|++|+.+++++|+++
T Consensus        38 a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  100 (356)
T PLN03088         38 LYADRAQANIKLGNFTEAVADANKAIELDPSL---------------AKAYLRKGTACMKLEEYQTAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            45688999999999999999999999987754               6689999999999999999999999999998

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.36  E-value=0.00089  Score=57.03  Aligned_cols=63  Identities=22%  Similarity=0.107  Sum_probs=56.9

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+...|..+++.|+|.+|+..|.+++...+..               ...+.|+|.||..+|++++|+..++++++++
T Consensus        53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        53 YWLGLAACCQMLKEYEEAIDAYALAAALDPDD---------------PRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            44578999999999999999999999976654               5678999999999999999999999999998

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK12370 invasion protein regulator; Provisional

Probab=97.34  E-value=0.0018  Score=69.20  Aligned_cols=61  Identities=15%  Similarity=0.026  Sum_probs=52.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ...|..+...|+|++|+..|++|+.+.|.+               ..+|+++|.+|..+|++++|+..++++++++
T Consensus       342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~  402 (553)
T PRK12370        342 GLLGLINTIHSEYIVGSLLFKQANLLSPIS---------------ADIKYYYGWNLFMAGQLEEALQTINECLKLD  402 (553)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            356888888999999999999999987765               5678899999999999999999999999888

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.27  E-value=0.0017  Score=63.73  Aligned_cols=64  Identities=16%  Similarity=0.094  Sum_probs=58.6

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|..+...|+|+.|+..|.+++++.+..               ...+.|++.++..+|+|++|+.+++++++++
T Consensus        99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~  162 (296)
T PRK11189         99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------------NYAYLNRGIALYYGGRYELAQDDLLAFYQDD  162 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            455689999999999999999999999987765               6688999999999999999999999999987

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.27  E-value=0.00046  Score=69.87  Aligned_cols=71  Identities=30%  Similarity=0.250  Sum_probs=64.2

Q ss_pred             HHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh---CHHHHHH
Q 036950          284 QEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK---EYKQAEK  360 (469)
Q Consensus       284 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~---~~~~ai~  360 (469)
                      -|..+.+++.|++||..|-.+.+..|+..|++++.+.+..               +.+|.|+|++++|.+   +.-.|+.
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------------~~~l~nraa~lmkRkW~~d~~~Alr  432 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------------IYLLENRAAALMKRKWRGDSYLALR  432 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------------hHHHHhHHHHHHhhhccccHHHHHH
Confidence            4566789999999999999999999999999999987643               789999999999975   7788999


Q ss_pred             HHHHHHhhc
Q 036950          361 LCSKVLELD  369 (469)
Q Consensus       361 ~~~~al~~d  369 (469)
                      +|..||++|
T Consensus       433 Dch~Alrln  441 (758)
T KOG1310|consen  433 DCHVALRLN  441 (758)
T ss_pred             hHHhhccCC
Confidence            999999999

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.24  E-value=0.0028  Score=66.01  Aligned_cols=77  Identities=22%  Similarity=0.185  Sum_probs=65.0

Q ss_pred             HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950          286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV  365 (469)
Q Consensus       286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a  365 (469)
                      .+..+..++..|+.+...++|.+|+..|.+|+......-..+       .+..+..+.|||..|.+.|+|.+|..+|++|
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            345566667899999999999999999999999886432222       4556889999999999999999999999999


Q ss_pred             Hhhc
Q 036950          366 LELD  369 (469)
Q Consensus       366 l~~d  369 (469)
                      +++-
T Consensus       310 l~I~  313 (508)
T KOG1840|consen  310 LEIY  313 (508)
T ss_pred             HHHH
Confidence            9886

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.0028  Score=64.93  Aligned_cols=58  Identities=29%  Similarity=0.234  Sum_probs=50.6

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHH
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEY  395 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l  395 (469)
                      ..+++|++.+|-|++.|.+||.+++++|.+.                       ...|.++|.+.|+|.     -+...|
T Consensus       455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~-----~~~~lL  529 (611)
T KOG1173|consen  455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI-----FISELL  529 (611)
T ss_pred             hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH-----HHHHHH
Confidence            4568999999999999999999999999987                       678999999999998     777777


Q ss_pred             HHHHHH
Q 036950          396 KLLKEK  401 (469)
Q Consensus       396 ~~~~~~  401 (469)
                      ..+-..
T Consensus       530 ~~aie~  535 (611)
T KOG1173|consen  530 KLAIED  535 (611)
T ss_pred             HHHHHh
Confidence            765443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.22  E-value=0.00076  Score=50.28  Aligned_cols=49  Identities=20%  Similarity=0.274  Sum_probs=38.6

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                      +..|.++|.+++.+++|++|+.+++++|           +++|++.     .+.-.+..+...+.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai-----------~~~p~~~-----~~~~~~g~~~~~~~   51 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAI-----------ELDPNNA-----EAYYNLGLAYMKLG   51 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHH-----------HHSTTHH-----HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HcCCCCH-----HHHHHHHHHHHHhC
Confidence            4578999999999999999999888777           5667776     66666666655554

...

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.21  E-value=0.0059  Score=56.07  Aligned_cols=79  Identities=25%  Similarity=0.410  Sum_probs=62.5

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---  369 (469)
                      +...|..++..|+|.+|+..|.+++......             .....+.|+|.||..+|++++|+..++++++.+   
T Consensus       102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-------------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhccccc-------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            4567889999999999999999999742211             124567889999999999999999999999877   


Q ss_pred             --------------------HHHHHHHHhhCCCCC
Q 036950          370 --------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 --------------------~~~~~~al~l~p~~~  384 (469)
                                          ...+++++.+.|.+.
T Consensus       169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  203 (234)
T TIGR02521       169 PESLLELAELYYLRGQYKDARAYLERYQQTYNQTA  203 (234)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence                                455677777766665

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.21  E-value=0.003  Score=58.99  Aligned_cols=93  Identities=17%  Similarity=0.173  Sum_probs=73.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      +..|..+|+.|+|..|+..++++...-+.+               ..+|+=++.||.++|+++.|-..+.+++++.    
T Consensus       104 ~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d---------------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p  168 (257)
T COG5010         104 AAQGKNQIRNGNFGEAVSVLRKAARLAPTD---------------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP  168 (257)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHhccCCCC---------------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc
Confidence            449999999999999999999999988776               6678889999999999999999999999988    


Q ss_pred             -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                                         ...+..+...-+.|.     .+...|..+........
T Consensus       169 ~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~-----~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         169 SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS-----RVRQNLALVVGLQGDFR  219 (257)
T ss_pred             hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch-----HHHHHHHHHHhhcCChH
Confidence                               223444444455566     77777776655544333

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.20  E-value=0.0031  Score=71.29  Aligned_cols=73  Identities=11%  Similarity=0.137  Sum_probs=59.0

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHH
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEY  395 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l  395 (469)
                      ..+|.|+|.++.++|++++|+..++++++++                       +..|+++++++|++.     .+...+
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~-----~a~~nL  683 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP-----ALIRQL  683 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHH
Confidence            4578999999999999999999999999998                       567999999999999     888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 036950          396 KLLKEKVREYNKKDVQFYGNIF  417 (469)
Q Consensus       396 ~~~~~~~~~~~~~e~~~~~~mf  417 (469)
                      ..+...+....+... .|.+.+
T Consensus       684 A~al~~lGd~~eA~~-~l~~Al  704 (987)
T PRK09782        684 AYVNQRLDDMAATQH-YARLVI  704 (987)
T ss_pred             HHHHHHCCCHHHHHH-HHHHHH
Confidence            877766665554443 244443

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.016  Score=59.65  Aligned_cols=73  Identities=22%  Similarity=0.267  Sum_probs=56.9

Q ss_pred             EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEE--EEEcCCCccCCCCCcccccCCCCCceEEEE
Q 036950          189 WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVAL--VTIEPEYAFGSCSSEKELAIVPANSTLFYE  266 (469)
Q Consensus       189 ~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~--~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~  266 (469)
                      .| .-||..|...   ..+.+.|.||.|.+|||++.+|.+|+.|+...  +++|.+|.-++.          .|.+..|.
T Consensus       169 ~g-~iDg~~fegg---~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L----------aGK~a~F~  234 (441)
T COG0544         169 EG-SVDGEEFEGG---KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL----------AGKEATFK  234 (441)
T ss_pred             EE-EEcCeeccCc---cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh----------CCCceEEE
Confidence            45 4578788764   35779999999999999999999999999977  455655543332          45678999


Q ss_pred             EEEeeeeec
Q 036950          267 VELVSFIKE  275 (469)
Q Consensus       267 vel~~~~~~  275 (469)
                      |+|..+...
T Consensus       235 V~vkeVk~~  243 (441)
T COG0544         235 VKVKEVKKR  243 (441)
T ss_pred             EEEEEEeec
Confidence            999999853

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.17  E-value=0.0035  Score=72.99  Aligned_cols=28  Identities=25%  Similarity=0.226  Sum_probs=17.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950          296 EGNVLFKAGKYERASKRYEQAVNYIGYD  323 (469)
Q Consensus       296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~  323 (469)
                      .|..++..|+|++|+..|++++...+.+
T Consensus       275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~  302 (1157)
T PRK11447        275 QGLAAVDSGQGGKAIPELQQAVRANPKD  302 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3666666666666666666666655543

>PRK15331 chaperone protein SicA; Provisional

Probab=97.16  E-value=0.0071  Score=53.06  Aligned_cols=64  Identities=16%  Similarity=0.165  Sum_probs=56.1

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +.+...|-.+|..|+|.+|...|+-...+.+++               ...+..+|+|+.-+++|++|+..+..|..++
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n---------------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~  101 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN---------------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL  101 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            455678899999999999999999888876655               4467999999999999999999999999887

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.16  E-value=0.00094  Score=52.08  Aligned_cols=58  Identities=26%  Similarity=0.290  Sum_probs=44.1

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV  365 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a  365 (469)
                      -+...|..+|+.|+|.+|+..+++ +...+.               ...++.-+|.|++++|+|++|+....++
T Consensus        27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~---------------~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPS---------------NPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC---------------HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC---------------CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            345579999999999999999988 443321               1345556699999999999999988765

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.14  E-value=0.00048  Score=68.49  Aligned_cols=65  Identities=22%  Similarity=0.271  Sum_probs=59.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +.||-+|++.+|.+|++.|+.||...|...          +.+++++++|++.++.++|+|++||..++.+++..
T Consensus       242 nigni~~kkr~fskaikfyrmaldqvpsin----------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~  306 (840)
T KOG2003|consen  242 NIGNIHFKKREFSKAIKFYRMALDQVPSIN----------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA  306 (840)
T ss_pred             eecceeeehhhHHHHHHHHHHHHhhccccc----------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC
Confidence            789999999999999999999999887652          56789999999999999999999999999999876

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.07  E-value=0.007  Score=51.86  Aligned_cols=66  Identities=20%  Similarity=0.252  Sum_probs=56.6

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+-..|.+.++.|+|..|+..++......|..+-            ...+.++++-+|++.++|..|+..+++-|+++
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y------------a~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY------------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            4568889999999999999999999988876532            24567899999999999999999998888776

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.05  E-value=0.0048  Score=67.38  Aligned_cols=86  Identities=17%  Similarity=0.138  Sum_probs=58.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHH----HHHHHHHHHhhc--
Q 036950          296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQ----AEKLCSKVLELD--  369 (469)
Q Consensus       296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~----ai~~~~~al~~d--  369 (469)
                      .|..+++.|+|.+|+..|.+++...+.+               ..++.|+|.+|..+|++++    |+..++++++++  
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~  282 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDG---------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD  282 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence            4677888889999999999888865543               4456667777777777664    677777777665  


Q ss_pred             ---------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 036950          370 ---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEK  401 (469)
Q Consensus       370 ---------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~  401 (469)
                                           ...+++++.++|++.     .+...+..+...
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~-----~a~~~La~~l~~  330 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP-----YVRAMYARALRQ  330 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH
Confidence                                 455666667777766     555555444433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.0039  Score=62.58  Aligned_cols=94  Identities=15%  Similarity=0.141  Sum_probs=80.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc------
Q 036950          296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD------  369 (469)
Q Consensus       296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d------  369 (469)
                      .||-+--++++++|+..|++|+++.+..               ..+|.=++.-|+.|++-..||..++.|++++      
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~---------------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA  400 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKY---------------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA  400 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcch---------------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence            6898889999999999999999987754               7788889999999999999999999999998      


Q ss_pred             -----------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950          370 -----------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD  409 (469)
Q Consensus       370 -----------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e  409 (469)
                                       +-.|++|+++-|+|.     .+...|..|-.++....+..
T Consensus       401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs-----Rlw~aLG~CY~kl~~~~eAi  452 (559)
T KOG1155|consen  401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDS-----RLWVALGECYEKLNRLEEAI  452 (559)
T ss_pred             HhhhhHHHHHhcchHHHHHHHHHHHhcCCCch-----HHHHHHHHHHHHhccHHHHH
Confidence                             667999999999999     88888888776665544433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.03  E-value=0.004  Score=60.57  Aligned_cols=73  Identities=23%  Similarity=0.305  Sum_probs=57.2

Q ss_pred             HHhhhcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          288 EAAGKKKEEGNVLFKA-GKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~-~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      ..|..+.+.|..+... ++++.|+..|++|+.++....         .......++.++|.++.++++|++|+..+++++
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3466667788888888 899999999999999986432         234457789999999999999999999999998


Q ss_pred             hhc
Q 036950          367 ELD  369 (469)
Q Consensus       367 ~~d  369 (469)
                      ...
T Consensus       183 ~~~  185 (282)
T PF14938_consen  183 KKC  185 (282)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            753

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.02  E-value=0.023  Score=53.37  Aligned_cols=104  Identities=18%  Similarity=0.172  Sum_probs=83.5

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+.++|....+.|+|.+|++.|.......+..+-            .-++.+.++-+|+|-++|+.|+...++-+.+.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~------------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY------------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc------------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            556789999999999999999999999987775532            24456788999999999999999999999887


Q ss_pred             ----------------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036950          370 ----------------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNK  407 (469)
Q Consensus       370 ----------------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~  407 (469)
                                                        ..+|+..+.--|+.+  =..+++..+..++..+...+-
T Consensus       102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~--Ya~dA~~~i~~~~d~LA~~Em  171 (254)
T COG4105         102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR--YAPDAKARIVKLNDALAGHEM  171 (254)
T ss_pred             CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc--chhhHHHHHHHHHHHHHHHHH
Confidence                                              678899999999977  111666777777776665553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.99  E-value=0.002  Score=61.39  Aligned_cols=68  Identities=29%  Similarity=0.267  Sum_probs=60.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      -+++-.|.+.|.|..|++-...||.+.+.               +.++|.-++++|+-+|+|.+|++.+.+||++|    
T Consensus       119 cNRAAAy~~Lg~~~~AVkDce~Al~iDp~---------------yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  119 CNRAAAYSKLGEYEDAVKDCESALSIDPH---------------YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhcChH---------------HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            37889999999999999999999998764               48999999999999999999999999999999    


Q ss_pred             --HHHHHHH
Q 036950          370 --KLDIKKA  376 (469)
Q Consensus       370 --~~~~~~a  376 (469)
                        +.+++.|
T Consensus       184 ~~K~nL~~A  192 (304)
T KOG0553|consen  184 SYKSNLKIA  192 (304)
T ss_pred             HHHHHHHHH
Confidence              4455555

>PLN02789 farnesyltranstransferase

Probab=96.96  E-value=0.0092  Score=59.04  Aligned_cols=85  Identities=13%  Similarity=0.058  Sum_probs=64.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh-CHHHHHHHHHHHHhhc---------
Q 036950          300 LFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK-EYKQAEKLCSKVLELD---------  369 (469)
Q Consensus       300 ~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~-~~~~ai~~~~~al~~d---------  369 (469)
                      +.+.+++.+|+..|.++|.+.+..               .+++.+|+.|+.+++ .+++++..++++++.+         
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~---------------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGN---------------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            556789999999999999987755               667888888888887 5788888888888777         


Q ss_pred             ----------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          370 ----------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       370 ----------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                                      +..+.++++++|.|.     .+.....-+-..+..
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy-----~AW~~R~w~l~~l~~  157 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKNY-----HAWSHRQWVLRTLGG  157 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHhhh
Confidence                            334567788888887     666655555554443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.96  E-value=0.01  Score=56.97  Aligned_cols=63  Identities=10%  Similarity=0.020  Sum_probs=49.9

Q ss_pred             HHHHHHH-HhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          294 KEEGNVL-FKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       294 k~~Gn~~-fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+.+-.+ ++.|+|.+|+..|+..+...|...            ....+++-+|.+|+..++|++|+..+.++++.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~------------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~  209 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDST------------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKN  209 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4555565 667999999999999999888652            12446788999999999999999888877743

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.93  E-value=0.008  Score=70.06  Aligned_cols=61  Identities=25%  Similarity=0.357  Sum_probs=43.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ...|..+++.|++.+|+..|++++...+.+               ..++.++|.+|..+|+|++|+..++++|+++
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---------------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~  415 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTD---------------SYAVLGLGDVAMARKDYAAAERYYQQALRMD  415 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            345777778888888888888888776543               3456677777777777777777777777654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.92  E-value=0.0018  Score=50.47  Aligned_cols=49  Identities=29%  Similarity=0.400  Sum_probs=40.8

Q ss_pred             cCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950          303 AGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK  364 (469)
Q Consensus       303 ~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~  364 (469)
                      .++|+.|+..|.+++...+.++             ....+.++|.||+++|+|++|+..+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5899999999999999876421             245778899999999999999998887

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.87  E-value=0.0021  Score=40.46  Aligned_cols=29  Identities=24%  Similarity=0.258  Sum_probs=24.6

Q ss_pred             HhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          340 TCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       340 ~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      ..+.++|.||+++|+|++|+.++++++++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            46889999999999999999988888754

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.86  E-value=0.0038  Score=60.06  Aligned_cols=90  Identities=14%  Similarity=0.079  Sum_probs=71.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc------
Q 036950          296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD------  369 (469)
Q Consensus       296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d------  369 (469)
                      .|..+|-.++-+-|++.|.+.|.+=-..               ..+++|+++|.+.-++|+-++..+.+|+..-      
T Consensus       330 ia~~yfY~~~PE~AlryYRRiLqmG~~s---------------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a  394 (478)
T KOG1129|consen  330 IAVGYFYDNNPEMALRYYRRILQMGAQS---------------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA  394 (478)
T ss_pred             eeeccccCCChHHHHHHHHHHHHhcCCC---------------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence            4555666667777777777777654333               4589999999999999999999999999765      


Q ss_pred             --------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950          370 --------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY  405 (469)
Q Consensus       370 --------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~  405 (469)
                                          .++|+-||..||++.     ++...|..++.+...-
T Consensus       395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~-----ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG-----EALNNLAVLAARSGDI  445 (478)
T ss_pred             hhhhhccceeEEeccchHHHHHHHHHHhccCcchH-----HHHHhHHHHHhhcCch
Confidence                                678999999999999     8888888887655443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.86  E-value=0.013  Score=63.95  Aligned_cols=98  Identities=3%  Similarity=-0.128  Sum_probs=73.6

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|......|+|++|...|..++.+.|..               +.++.|+|.++.+++++++|+..|+++|..+
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---------------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~  150 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---------------SEAFILMLRGVKRQQGIEAGRAEIELYFSGG  150 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence            4556677888888888888888888888888765               6777888888888888888888888888877


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNK  407 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~  407 (469)
                                             ...|++++..+|++.     .+.-.+..+-+...+..+
T Consensus       151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~-----~~~~~~a~~l~~~G~~~~  206 (694)
T PRK15179        151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFE-----NGYVGWAQSLTRRGALWR  206 (694)
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCCHHH
Confidence                                   566788888778777     666555555554444433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.85  E-value=0.019  Score=58.22  Aligned_cols=77  Identities=18%  Similarity=0.124  Sum_probs=57.8

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---  369 (469)
                      +...|..+++.+++.+|+..|.+++...+..               ..++.+++.+|.++|++++|+..++++++.+   
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQC---------------VRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            4567777888889999999998888865533               3466778888888888888888888888654   


Q ss_pred             ---------------------HHHHHHHHhhCCCCC
Q 036950          370 ---------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 ---------------------~~~~~~al~l~p~~~  384 (469)
                                           ...+++++..+|++.
T Consensus       248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~  283 (389)
T PRK11788        248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD  283 (389)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence                                 445666777777665

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.81  E-value=0.0028  Score=67.46  Aligned_cols=92  Identities=33%  Similarity=0.456  Sum_probs=77.5

Q ss_pred             ChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHh--hCHHHHH
Q 036950          282 NTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL--KEYKQAE  359 (469)
Q Consensus       282 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl--~~~~~ai  359 (469)
                      +...-+.++..++++||.+|++++|..|.-.|..++.+++.+.           ...+.+++|++.||+.+  ++|..++
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~-----------~~~a~~~~~~~s~~m~~~l~~~~~~~  113 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDH-----------HVVATLRSNQASCYMQLGLGEYPKAI  113 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccc-----------hhhhhHHHHHHHHHhhcCccchhhhc
Confidence            4556788999999999999999999999999999999998653           23488999999999876  5899999


Q ss_pred             HHHHHHHhhc-----------------------HHHHHHHHhhCCCCC
Q 036950          360 KLCSKVLELD-----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       360 ~~~~~al~~d-----------------------~~~~~~al~l~p~~~  384 (469)
                      ..|+-|+...                       .+|+.-....+|++.
T Consensus       114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~  161 (748)
T KOG4151|consen  114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNV  161 (748)
T ss_pred             CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            9999999877                       345566667788886

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.78  E-value=0.0021  Score=66.05  Aligned_cols=77  Identities=22%  Similarity=0.226  Sum_probs=53.2

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC-------------CCHHHH------HHHHHHHHHhHhHHHHHHHHhh
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSS-------------FSDEEK------QQAKVLKITCNLNNAACKLKLK  353 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~-------------~~~e~~------~~~~~l~~~~~~N~a~~~~kl~  353 (469)
                      .--.|.-++-.++|++|+.+|+.||..-|.+..             -+.|-.      -++++-++.+.+|+|.||+.+|
T Consensus       433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG  512 (579)
T KOG1125|consen  433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG  512 (579)
T ss_pred             HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence            346778888888888888888888887766521             111111      1233344667888888888888


Q ss_pred             CHHHHHHHHHHHHhhc
Q 036950          354 EYKQAEKLCSKVLELD  369 (469)
Q Consensus       354 ~~~~ai~~~~~al~~d  369 (469)
                      -|++|+.++-.||.+.
T Consensus       513 ~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  513 AYKEAVKHLLEALSMQ  528 (579)
T ss_pred             hHHHHHHHHHHHHHhh
Confidence            8888888888888665

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.76  E-value=0.017  Score=58.50  Aligned_cols=30  Identities=23%  Similarity=0.140  Sum_probs=21.5

Q ss_pred             HhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          340 TCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       340 ~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .++++++.++++++++++|+..++++++.+
T Consensus       181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~  210 (389)
T PRK11788        181 HFYCELAQQALARGDLDAARALLKKALAAD  210 (389)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence            345677777777777777777777777655

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.74  E-value=0.008  Score=49.41  Aligned_cols=70  Identities=19%  Similarity=0.195  Sum_probs=57.5

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKL  371 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~  371 (469)
                      .....|..+++.++|+.|+..|.+++...+..+..            ..++.++|.|+.+++++++|+..+++++     
T Consensus        41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~-----  103 (119)
T TIGR02795        41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA------------PDALLKLGMSLQELGDKEKAKATLQQVI-----  103 (119)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc------------cHHHHHHHHHHHHhCChHHHHHHHHHHH-----
Confidence            34568999999999999999999999987654221            4468999999999999999988777766     


Q ss_pred             HHHHHHhhCCCCC
Q 036950          372 DIKKALEIDPDNS  384 (469)
Q Consensus       372 ~~~~al~l~p~~~  384 (469)
                            +..|++.
T Consensus       104 ------~~~p~~~  110 (119)
T TIGR02795       104 ------KRYPGSS  110 (119)
T ss_pred             ------HHCcCCh
Confidence                  6678776

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.74  E-value=0.015  Score=63.46  Aligned_cols=76  Identities=12%  Similarity=0.165  Sum_probs=59.2

Q ss_pred             HHHHHHHHhcCCHHH----HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          294 KEEGNVLFKAGKYER----ASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~----A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ...|..++..|+|.+    |+..|++++...|.+               ..++.|+|.+++++|+|++|+..++++++++
T Consensus       250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~  314 (656)
T PRK15174        250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN---------------VRIVTLYADALIRTGQNEKAIPLLQQSLATH  314 (656)
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            457888888888885    788888888877654               5677788888888888888888888888776


Q ss_pred             -----------------------HHHHHHHHhhCCCCC
Q 036950          370 -----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~  384 (469)
                                             ...|++++..+|++.
T Consensus       315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~  352 (656)
T PRK15174        315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS  352 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence                                   556777777788765

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.73  E-value=0.0031  Score=65.81  Aligned_cols=107  Identities=15%  Similarity=0.151  Sum_probs=72.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCCCC--------------CCHHHH-----HHHHHHHHHhHhHHHHHHHHhhCHH
Q 036950          296 EGNVLFKAGKYERASKRYEQAVNYIGYDSS--------------FSDEEK-----QQAKVLKITCNLNNAACKLKLKEYK  356 (469)
Q Consensus       296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~--------------~~~e~~-----~~~~~l~~~~~~N~a~~~~kl~~~~  356 (469)
                      .|-++.....|+.|..+|+.||.+.+..-.              ....+.     -++++-...+.+-++..|.++|+.+
T Consensus       461 lGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d  540 (638)
T KOG1126|consen  461 LGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKD  540 (638)
T ss_pred             cCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhh
Confidence            677777888888888888888887764310              000111     1233344556667789999999999


Q ss_pred             HHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036950          357 QAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNK  407 (469)
Q Consensus       357 ~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~  407 (469)
                      +|+..+++|+-+|                       +..|+...++-|++.     .+.-.+.++-++++....
T Consensus       541 ~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es-----~v~~llgki~k~~~~~~~  609 (638)
T KOG1126|consen  541 KALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQES-----SVFALLGKIYKRLGNTDL  609 (638)
T ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH-----HHHHHHHHHHHHHccchH
Confidence            9999999999999                       444555566667776     666666666655554443

>PRK12370 invasion protein regulator; Provisional

Probab=96.73  E-value=0.014  Score=62.43  Aligned_cols=68  Identities=16%  Similarity=0.078  Sum_probs=61.0

Q ss_pred             hcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc------------
Q 036950          302 KAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD------------  369 (469)
Q Consensus       302 k~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d------------  369 (469)
                      ..+++.+|+..|.+|+.+.|.+               ..+|.++|.++..+|+|++|+..+++||+++            
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  380 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNN---------------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW  380 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3456899999999999987765               6678899999999999999999999999998            


Q ss_pred             -----------HHHHHHHHhhCCCCC
Q 036950          370 -----------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 -----------~~~~~~al~l~p~~~  384 (469)
                                 ...++++++++|.+.
T Consensus       381 ~l~~~G~~~eAi~~~~~Al~l~P~~~  406 (553)
T PRK12370        381 NLFMAGQLEEALQTINECLKLDPTRA  406 (553)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence                       678999999999987

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.66  E-value=0.016  Score=63.26  Aligned_cols=97  Identities=8%  Similarity=-0.081  Sum_probs=74.8

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +....+.++.+++.+++++|+..+++++...++.               ...++++|.|+.++|+|++|+..+++++..+
T Consensus       120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~---------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~  184 (694)
T PRK15179        120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS---------------AREILLEAKSWDEIGQSEQADACFERLSRQH  184 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence            3445688999999999999999999999988766               6788999999999999999999999999754


Q ss_pred             -----------------------HHHHHHHHhhCC-CCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDP-DNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p-~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                                             ...|++|++... ..+     ...+.+..+.+.....+
T Consensus       185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~  240 (694)
T PRK15179        185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR-----KLTRRLVDLNADLAALR  240 (694)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH-----HHHHHHHHHHHHHHHHH
Confidence                                   556888877743 333     44455555555444433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.66  E-value=0.014  Score=65.09  Aligned_cols=80  Identities=28%  Similarity=0.326  Sum_probs=63.3

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..+++.|+|++|+..|.+++...+..               ...+.++|.+++..|+|++|+..++++++.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  189 (899)
T TIGR02917       125 AELLALRGLAYLGLGQLELAQKSYEQALAIDPRS---------------LYAKLGLAQLALAENRFDEARALIDEVLTAD  189 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            4556788999999999999999999999876643               3356777888888888888888888887765


Q ss_pred             -----------------------HHHHHHHHhhCCCCC
Q 036950          370 -----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~  384 (469)
                                             ...|++++.++|++.
T Consensus       190 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~  227 (899)
T TIGR02917       190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNP  227 (899)
T ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Confidence                                   456777777788776

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.65  E-value=0.0025  Score=62.99  Aligned_cols=76  Identities=13%  Similarity=0.197  Sum_probs=61.3

Q ss_pred             HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950          285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK  364 (469)
Q Consensus       285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~  364 (469)
                      +++.+...+-+.||.+|-.|+|+.|+..-+.-|.+....-         -+.-...+|+|++.||.-+|+|+.|++++..
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG---------DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~  260 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG---------DRAAERRAHSNLGNCHIFLGNFELAIEHYKL  260 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh---------hHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence            4555666677899999999999999999998887654321         1223367899999999999999999999999


Q ss_pred             HHhhc
Q 036950          365 VLELD  369 (469)
Q Consensus       365 al~~d  369 (469)
                      +|.+-
T Consensus       261 tl~LA  265 (639)
T KOG1130|consen  261 TLNLA  265 (639)
T ss_pred             HHHHH
Confidence            88776

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.64  E-value=0.014  Score=51.77  Aligned_cols=83  Identities=18%  Similarity=0.102  Sum_probs=61.3

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhC----HHHHHHHHHHHHhhcHHHHHHHHhhC
Q 036950          305 KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE----YKQAEKLCSKVLELDKLDIKKALEID  380 (469)
Q Consensus       305 ~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~----~~~ai~~~~~al~~d~~~~~~al~l~  380 (469)
                      -+++|+.+|++||.+.|..               ...+.|++.+|..++.    ..+|..++++|.    ..|++|...+
T Consensus        50 miedAisK~eeAL~I~P~~---------------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~----~~FqkAv~~~  110 (186)
T PF06552_consen   50 MIEDAISKFEEALKINPNK---------------HDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT----EYFQKAVDED  110 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT----------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhcCCch---------------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH----HHHHHHHhcC
Confidence            4778888888888877654               7788999999998874    456667777776    7999999999


Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          381 PDNSLEAGWGVRMEYKLLKEKVREYNKKDVQ  411 (469)
Q Consensus       381 p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~  411 (469)
                      |+|.     ..++-|+...+.=.-..+-.++
T Consensus       111 P~ne-----~Y~ksLe~~~kap~lh~e~~~~  136 (186)
T PF06552_consen  111 PNNE-----LYRKSLEMAAKAPELHMEIHKQ  136 (186)
T ss_dssp             TT-H-----HHHHHHHHHHTHHHHHHHHHHS
T ss_pred             CCcH-----HHHHHHHHHHhhHHHHHHHHHH
Confidence            9999     8888888886654444444443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.64  E-value=0.028  Score=50.63  Aligned_cols=78  Identities=21%  Similarity=0.235  Sum_probs=64.2

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      ++.-+-++|-.+.|.+.|..|+...++||.+-+..               ..++..||-+|-++..|++|+.++.++++.
T Consensus       133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty---------------~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY---------------EKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh---------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            35556789999999999999999999999987643               566678899999999999999999999999


Q ss_pred             c--HHHHHHHH-hhCC
Q 036950          369 D--KLDIKKAL-EIDP  381 (469)
Q Consensus       369 d--~~~~~~al-~l~p  381 (469)
                      |  .+..++++ .+.|
T Consensus       198 dPs~~ear~~i~rl~~  213 (271)
T KOG4234|consen  198 DPSRREAREAIARLPP  213 (271)
T ss_pred             CcchHHHHHHHHhcCH
Confidence            9  44555543 4444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=0.027  Score=57.11  Aligned_cols=68  Identities=18%  Similarity=0.089  Sum_probs=46.5

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      -..|+.+.-.|.-+|-.|++..|-..+.++|.+.+...               .+|.-||+.|+..++-.+-..++++|.
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~---------------~lyI~~a~~y~d~~~~~~~~~~F~~A~  387 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN---------------SLYIKRAAAYADENQSEKMWKDFNKAE  387 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc---------------hHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence            34577888899999999999999999999999877552               224444444444444444444444444


Q ss_pred             hhc
Q 036950          367 ELD  369 (469)
Q Consensus       367 ~~d  369 (469)
                      .+|
T Consensus       388 ~ld  390 (606)
T KOG0547|consen  388 DLD  390 (606)
T ss_pred             hcC
Confidence            444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0078  Score=61.82  Aligned_cols=72  Identities=24%  Similarity=0.169  Sum_probs=64.5

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---  369 (469)
                      +-+.|-.+.|.++|.+|+..|++||...+.+               ...|+-+|.||..+|+++.|++++.+||.++   
T Consensus       458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~---------------~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKD---------------ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---------------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            5589999999999999999999999988866               7789999999999999999999999999998   


Q ss_pred             ---HHHHHHHHhh
Q 036950          370 ---KLDIKKALEI  379 (469)
Q Consensus       370 ---~~~~~~al~l  379 (469)
                         .+-++.|++.
T Consensus       523 ~~~~~lL~~aie~  535 (611)
T KOG1173|consen  523 IFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHHHHHHh
Confidence               4556677665

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.54  E-value=0.0024  Score=40.62  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=29.9

Q ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHH
Q 036950          312 RYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAE  359 (469)
Q Consensus       312 ~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai  359 (469)
                      +|++||++.|.+               ..+|+|+|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n---------------~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNN---------------AEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCC---------------HHHHHHHHHHHHHCcCHHhhc
Confidence            489999998877               789999999999999999986

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.53  E-value=0.008  Score=45.87  Aligned_cols=62  Identities=29%  Similarity=0.350  Sum_probs=53.4

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+...|..++..+++..|+..|++++...+..               ..++.+++.++..+++++.|...+.++++.
T Consensus        36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDN---------------AKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            35578999999999999999999999976654               257789999999999999999999888764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.53  E-value=0.02  Score=63.70  Aligned_cols=87  Identities=9%  Similarity=0.034  Sum_probs=73.9

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---  369 (469)
                      +...|..+.+.|++.+|+..|++++...|..               ..++.+++.+++..+++.+|+..++++++.+   
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~  116 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQN---------------DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDK  116 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            5678899999999999999999999987755               4456799999999999999999999999876   


Q ss_pred             -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950          370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK  399 (469)
Q Consensus       370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  399 (469)
                                         +..++++++++|++.     .+...+..+.
T Consensus       117 ~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~-----~~~~~la~~l  160 (765)
T PRK10049        117 ANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQ-----QYPTEYVQAL  160 (765)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHH
Confidence                               677999999999998     6666555443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.53  E-value=0.0039  Score=40.15  Aligned_cols=28  Identities=18%  Similarity=0.145  Sum_probs=24.5

Q ss_pred             hHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          341 CNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      +|+|+|.+|.++|+|++|+.+++++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999998854

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.47  E-value=0.1  Score=45.03  Aligned_cols=97  Identities=19%  Similarity=0.195  Sum_probs=69.9

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYD-------SSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK  364 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~-------~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~  364 (469)
                      .+...|...-..++...++..|.+++.++...       ..+.......+......+...++.++...|+|+.|+..|.+
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            34456777788899999999999999988543       13445677788899999999999999999999999999988


Q ss_pred             HHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          365 VLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       365 al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                      ++           .++|-|.     .+...+-++-.....
T Consensus        88 ~l-----------~~dP~~E-----~~~~~lm~~~~~~g~  111 (146)
T PF03704_consen   88 AL-----------ALDPYDE-----EAYRLLMRALAAQGR  111 (146)
T ss_dssp             HH-----------HHSTT-H-----HHHHHHHHHHHHTT-
T ss_pred             HH-----------hcCCCCH-----HHHHHHHHHHHHCcC
Confidence            87           5666666     555555555444433

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.46  E-value=0.0047  Score=61.66  Aligned_cols=92  Identities=16%  Similarity=0.193  Sum_probs=72.3

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh--
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL--  368 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~--  368 (469)
                      ..+-++||-.|..|+|++|...|++||.-..               -+..+++|+++++-++|+.++|++++-+.-.+  
T Consensus       491 ~a~~nkgn~~f~ngd~dka~~~ykeal~nda---------------sc~ealfniglt~e~~~~ldeald~f~klh~il~  555 (840)
T KOG2003|consen  491 AALTNKGNIAFANGDLDKAAEFYKEALNNDA---------------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILL  555 (840)
T ss_pred             HHhhcCCceeeecCcHHHHHHHHHHHHcCch---------------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence            3456799999999999999999999997332               23667899999999999999999988764332  


Q ss_pred             c---------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          369 D---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       369 d---------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                      +                     ++.+-++..+-|++.     ++...|..+..+.
T Consensus       556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp-----~ilskl~dlydqe  605 (840)
T KOG2003|consen  556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDP-----AILSKLADLYDQE  605 (840)
T ss_pred             hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCH-----HHHHHHHHHhhcc
Confidence            2                     566777778889998     8887777775443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.43  E-value=0.022  Score=50.92  Aligned_cols=80  Identities=19%  Similarity=0.075  Sum_probs=62.4

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..+++.|+|+.|+..|.+++...+..               ...+.+++.||..++++..+..++..++..-
T Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~  136 (172)
T PRK02603         72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQ---------------PSALNNIAVIYHKRGEKAEEAGDQDEAEALF  136 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHH
Confidence            3456788999999999999999999999976643               5567888999988877555555555555433


Q ss_pred             ---HHHHHHHHhhCCCCC
Q 036950          370 ---KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 ---~~~~~~al~l~p~~~  384 (469)
                         .+.+++++.++|+|.
T Consensus       137 ~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        137 DKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHHHhhCchhH
Confidence               578888999999876

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.41  E-value=0.027  Score=62.86  Aligned_cols=87  Identities=21%  Similarity=0.148  Sum_probs=59.3

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---  369 (469)
                      +...|..+.+.|++.+|+..|.+++...+.+               ..+++++|.+|.++|++++|+..++++++.+   
T Consensus       739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  803 (899)
T TIGR02917       739 AIKLHRALLASGNTAEAVKTLEAWLKTHPND---------------AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN  803 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence            4456777888888888888888888765543               4466777777777777777777777777665   


Q ss_pred             -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950          370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK  399 (469)
Q Consensus       370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  399 (469)
                                         +..+++++.+.|++.     .+...+..+.
T Consensus       804 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~  847 (899)
T TIGR02917       804 AVVLNNLAWLYLELKDPRALEYAEKALKLAPNIP-----AILDTLGWLL  847 (899)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCc-----HHHHHHHHHH
Confidence                               345666666777766     5554444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.04  Score=55.54  Aligned_cols=29  Identities=21%  Similarity=0.190  Sum_probs=26.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYD  323 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~  323 (469)
                      -.|-++...++-..|+..|++|+++.|.+
T Consensus       369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~D  397 (559)
T KOG1155|consen  369 LMGHEYVEMKNTHAAIESYRRAVDINPRD  397 (559)
T ss_pred             HhhHHHHHhcccHHHHHHHHHHHhcCchh
Confidence            58999999999999999999999999876

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.40  E-value=0.011  Score=64.22  Aligned_cols=100  Identities=22%  Similarity=0.269  Sum_probs=69.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHHhcCC--------------CCCCH--HHHHHHHHHHH---HhHhHHHHHHHHhhCHHHHHH
Q 036950          300 LFKAGKYERASKRYEQAVNYIGYD--------------SSFSD--EEKQQAKVLKI---TCNLNNAACKLKLKEYKQAEK  360 (469)
Q Consensus       300 ~fk~~~~~~A~~~Y~~al~~~~~~--------------~~~~~--e~~~~~~~l~~---~~~~N~a~~~~kl~~~~~ai~  360 (469)
                      .-.++.+.+|+.+|.++|+..|..              ..+.+  +-...+++-..   .+|.|+|.||+-+|+|..||+
T Consensus       622 ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIq  701 (1018)
T KOG2002|consen  622 EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQ  701 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHH
Confidence            445567888888888888877543              01111  12223333333   689999999999999999999


Q ss_pred             HHHHHHhhc-------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          361 LCSKVLELD-------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       361 ~~~~al~~d-------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                      .++.++..-                         ++.+.+|+.+.|.|.     .+.-.+..+.+++..
T Consensus       702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~-----~v~FN~a~v~kkla~  765 (1018)
T KOG2002|consen  702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT-----SVKFNLALVLKKLAE  765 (1018)
T ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc-----hHHhHHHHHHHHHHH
Confidence            999999764                         567888889999999     666555555444433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.048  Score=54.23  Aligned_cols=79  Identities=20%  Similarity=0.188  Sum_probs=65.1

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-  369 (469)
                      ..+.-+||.+.+.++.++|+-.|+.|..+-|.+               ..+|--+-.||+..+.+.+|...++.+++.- 
T Consensus       335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r---------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~  399 (564)
T KOG1174|consen  335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYR---------------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQ  399 (564)
T ss_pred             hHHHhccHHHHhccchHHHHHHHHHHHhcchhh---------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence            344568999999999999999999999876654               7789999999999999999999999988764 


Q ss_pred             ------------------------HHHHHHHHhhCCCCC
Q 036950          370 ------------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 ------------------------~~~~~~al~l~p~~~  384 (469)
                                              +.-++++|+++|..-
T Consensus       400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~  438 (564)
T KOG1174|consen  400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT  438 (564)
T ss_pred             cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence                                    445667777777765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=96.38  E-value=0.054  Score=50.80  Aligned_cols=65  Identities=8%  Similarity=0.060  Sum_probs=51.3

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHh--------hCHHHHHHHHHH
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL--------KEYKQAEKLCSK  364 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl--------~~~~~ai~~~~~  364 (469)
                      +...|..+++.++|..|+..|.++++..+..+..            ..++.+++.|++++        +++..|+..+++
T Consensus        73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~  140 (235)
T TIGR03302        73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQE  140 (235)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999988865432            22567778888776        778888888877


Q ss_pred             HHhhc
Q 036950          365 VLELD  369 (469)
Q Consensus       365 al~~d  369 (469)
                      ++..+
T Consensus       141 ~~~~~  145 (235)
T TIGR03302       141 LIRRY  145 (235)
T ss_pred             HHHHC
Confidence            77554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.025  Score=58.95  Aligned_cols=68  Identities=22%  Similarity=0.218  Sum_probs=59.2

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +-+.+..+|+.++|..|++.|...+++++.+.         .....+++.-|++.||+++.+.+.|+++..+|=+.|
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~---------~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d  424 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN---------YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD  424 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchh---------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence            45789999999999999999999999988652         122337788899999999999999999999999988

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.36  E-value=0.059  Score=58.36  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=30.8

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD  323 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~  323 (469)
                      +..+.-++|.+|..|++.+|.+...++|+..+..
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~  172 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN  172 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc
Confidence            6678889999999999999999999999987754

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.30  E-value=0.011  Score=45.01  Aligned_cols=32  Identities=22%  Similarity=0.182  Sum_probs=28.1

Q ss_pred             HHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          337 LKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       337 l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      ....+|+|+|.+|..+|+|++|+.++++||++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~   34 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDI   34 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35778999999999999999999999999965

...

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.27  E-value=0.035  Score=51.16  Aligned_cols=64  Identities=28%  Similarity=0.354  Sum_probs=53.3

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +.+-|--++..|+|++|...|.+|+.- |....            ....+-|++.|.+++|+++.|.+++.++|++|
T Consensus       106 LNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~------------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063         106 LNNYGAFLCAQGRPEEAMQQFERALAD-PAYGE------------PSDTLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             hhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCC------------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence            447788889999999999999999862 32221            14578999999999999999999999999999

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.25  E-value=0.00039  Score=67.00  Aligned_cols=98  Identities=10%  Similarity=-0.074  Sum_probs=82.5

Q ss_pred             HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950          285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK  364 (469)
Q Consensus       285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~  364 (469)
                      +-..++..+|..|+.+|+.+.|..|+.+|.+.+......               ..+..| +..|+|.-+|+.++.+|.+
T Consensus       229 Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~---------------~~L~~~-~~~~~KI~~~~~~~~~~~~  292 (536)
T KOG4648|consen  229 QGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDS---------------NQLRIS-DEDIDKIFNSNCGIIEEVK  292 (536)
T ss_pred             cchhhhccccCcchhhhhhhccccceeEeeccccccCcc---------------ccCccc-HHHHHHHhhcchhHHHHHH
Confidence            345567778999999999999999999999998765543               345566 9999999999999999999


Q ss_pred             HHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          365 VLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       365 al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                      ++.++                       ..+++.++.+.|.++     ....++.++..++-
T Consensus       293 ~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~-----~~~~~~sr~~~~ii  349 (536)
T KOG4648|consen  293 KTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE-----TPKETETRKDTKIV  349 (536)
T ss_pred             hcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccc-----cchhhhhhhccccc
Confidence            99998                       568999999999999     88888877766553

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.24  E-value=0.053  Score=59.21  Aligned_cols=91  Identities=20%  Similarity=0.166  Sum_probs=77.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----  369 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----  369 (469)
                      -.+|-+|-+|+|..+...+.-|+..-.            ...+.+-.|+++|.||..+|+|++|..++.++++.+     
T Consensus       275 ~LAn~fyfK~dy~~v~~la~~ai~~t~------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~  342 (1018)
T KOG2002|consen  275 HLANHFYFKKDYERVWHLAEHAIKNTE------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV  342 (1018)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc
Confidence            478889999999999999999987542            244567779999999999999999999999999988     


Q ss_pred             -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                                         ..+|+++++..|+|.     +..+.|..+-...
T Consensus       343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~-----etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY-----ETMKILGCLYAHS  389 (1018)
T ss_pred             ccccchhHHHHHhchHHHHHHHHHHHHHhCcchH-----HHHHHHHhHHHhh
Confidence                               678999999999999     7777777776655

>PLN02789 farnesyltranstransferase

Probab=96.23  E-value=0.078  Score=52.49  Aligned_cols=86  Identities=15%  Similarity=-0.012  Sum_probs=59.5

Q ss_pred             cHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCH--HHHHHHHHHHHhhc
Q 036950          293 KKEEGNVLFKAG-KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEY--KQAEKLCSKVLELD  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~-~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~--~~ai~~~~~al~~d  369 (469)
                      +..+|..+.+.+ ++.+|+..+.+++...+..               ..++.+|+.++.+++++  .+++..|+++|++|
T Consensus        74 W~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn---------------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d  138 (320)
T PLN02789         74 WHFRRLCLEALDADLEEELDFAEDVAEDNPKN---------------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLD  138 (320)
T ss_pred             HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc---------------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC
Confidence            345677777777 6899999999999876654               44567777776666653  56677777777766


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLL  398 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~  398 (469)
                                             ++.+.+++++||+|.     .+...+..+
T Consensus       139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~-----sAW~~R~~v  185 (320)
T PLN02789        139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN-----SAWNQRYFV  185 (320)
T ss_pred             cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch-----hHHHHHHHH
Confidence                                   556666777788887     555544444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.15  E-value=0.021  Score=61.72  Aligned_cols=68  Identities=26%  Similarity=0.360  Sum_probs=57.9

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      +.+.-+++.+..+...|+|..|++.|..++..-.+.              ...+|.++|.||+.++.|+.|+.++.+||.
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~--------------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~  477 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ--------------NAFVWYKLARCYMELGEYEEAIEFYEKVLI  477 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc--------------chhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            345566788899999999999999999998754432              166899999999999999999999999998


Q ss_pred             hc
Q 036950          368 LD  369 (469)
Q Consensus       368 ~d  369 (469)
                      ++
T Consensus       478 ~~  479 (895)
T KOG2076|consen  478 LA  479 (895)
T ss_pred             cC
Confidence            77

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.13  E-value=0.037  Score=61.64  Aligned_cols=61  Identities=13%  Similarity=-0.043  Sum_probs=54.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ...|..+...|++++|+..+++++...|..               ..+++++|.++..+|++++|+..++++++++
T Consensus       363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---------------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~  423 (765)
T PRK10049        363 SLLSQVAKYSNDLPQAEMRARELAYNAPGN---------------QGLRIDYASVLQARGWPRAAENELKKAEVLE  423 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence            467888889999999999999999988765               5688999999999999999999999988765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.13  E-value=0.026  Score=54.66  Aligned_cols=97  Identities=22%  Similarity=0.230  Sum_probs=60.3

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC-----------CCH-HH-HHHHHHHH------HHhHhHHHHHHHHh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSS-----------FSD-EE-KQQAKVLK------ITCNLNNAACKLKL  352 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~-----------~~~-e~-~~~~~~l~------~~~~~N~a~~~~kl  352 (469)
                      -+...|+.+.+.|++++|++.|++|++..|.++.           ..+ ++ ...+..+.      ..++..+|.||+.+
T Consensus       148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l  227 (280)
T PF13429_consen  148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL  227 (280)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence            3456889999999999999999999999987522           111 11 11122221      23567788888888


Q ss_pred             hCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          353 KEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       353 ~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                      |++++|+..+++++           +.+|+|.     .+...+..+-.....
T Consensus       228 g~~~~Al~~~~~~~-----------~~~p~d~-----~~~~~~a~~l~~~g~  263 (280)
T PF13429_consen  228 GRYEEALEYLEKAL-----------KLNPDDP-----LWLLAYADALEQAGR  263 (280)
T ss_dssp             T-HHHHHHHHHHHH-----------HHSTT-H-----HHHHHHHHHHT----
T ss_pred             cccccccccccccc-----------ccccccc-----ccccccccccccccc
Confidence            88888877666655           6777777     666555555444433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=96.04  E-value=0.087  Score=55.10  Aligned_cols=75  Identities=27%  Similarity=0.264  Sum_probs=63.5

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      +.+..+.+.+..+-.+++|++|...|+++++++.+.+...       +......+.|+|-+|+++|+|++|.+.+.+||.
T Consensus       323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~-------~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED-------NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            4566777889999999999999999999999987443322       335578899999999999999999999999998


Q ss_pred             hc
Q 036950          368 LD  369 (469)
Q Consensus       368 ~d  369 (469)
                      ..
T Consensus       396 ~~  397 (508)
T KOG1840|consen  396 IL  397 (508)
T ss_pred             HH
Confidence            76

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.00  E-value=0.014  Score=36.50  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=27.5

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGY  322 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~  322 (469)
                      +.+...|..+++.|+|++|+..|++++.+.|.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            45678999999999999999999999998764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.98  E-value=0.034  Score=49.41  Aligned_cols=82  Identities=17%  Similarity=0.055  Sum_probs=64.6

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcH
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDK  370 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~  370 (469)
                      ..+.+.|..+...|++++|+..|.+|+...+..        .........++.|++..+.++|+++.|+.++.+++    
T Consensus        73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~----  140 (168)
T CHL00033         73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFL--------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA----  140 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH----
Confidence            356788999999999999999999999875432        11122335556666666669999999999999998    


Q ss_pred             HHHHHHHhhCCCCC
Q 036950          371 LDIKKALEIDPDNS  384 (469)
Q Consensus       371 ~~~~~al~l~p~~~  384 (469)
                      ..+++++..+|++.
T Consensus       141 ~~~~~a~~~~p~~~  154 (168)
T CHL00033        141 EYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHhCcccH
Confidence            58999999999876

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.97  E-value=0.012  Score=36.93  Aligned_cols=29  Identities=28%  Similarity=0.310  Sum_probs=25.9

Q ss_pred             HhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          340 TCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       340 ~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+|.++|.||.++|++++|+.++++++++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            46889999999999999999988888865

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.97  E-value=0.052  Score=60.38  Aligned_cols=90  Identities=8%  Similarity=0.008  Sum_probs=73.0

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---  369 (469)
                      +...|..+...|+|++|+..|++++...|.+               ..++.-++.+|..++++++|+..+.+++..+   
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n---------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~  169 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKKDPTN---------------PDLISGMIMTQADAGRGGVVLKQATELAERDPTV  169 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch
Confidence            3445778888899999999999999988765               3344566999999999999999999999888   


Q ss_pred             -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                                         ++.++++++++|++.     ++..++..+-...
T Consensus       170 ~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~-----e~~~~~~~~l~~~  216 (822)
T PRK14574        170 QNYMTLSYLNRATDRNYDALQASSEAVRLAPTSE-----EVLKNHLEILQRN  216 (822)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHc
Confidence                               567888999999998     7766666554433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.90  E-value=0.017  Score=38.94  Aligned_cols=41  Identities=24%  Similarity=0.296  Sum_probs=33.9

Q ss_pred             hHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 036950          341 CNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKL  397 (469)
Q Consensus       341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~  397 (469)
                      ++.++|.+|..+|++++|+..++++|           +.+|+|.     .++..+.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l-----------~~~P~~~-----~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRAL-----------ALDPDDP-----EAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-----------HHCcCCH-----HHHHHhhh
Confidence            57889999999999999988776665           7899998     77776654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=95.85  E-value=0.059  Score=59.83  Aligned_cols=62  Identities=10%  Similarity=-0.063  Sum_probs=55.3

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+...|..|=+.|++++|...|.++|++.+.+               +.+++|+|-.|... +.++|+.++.+|++..
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---------------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDN---------------PEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            56688999999999999999999999988655               67889999999999 9999999999999765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.83  E-value=0.018  Score=36.23  Aligned_cols=33  Identities=30%  Similarity=0.399  Sum_probs=27.9

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY  322 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~  322 (469)
                      |..+...|..++..++|.+|+..|++||++.|.
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            345678999999999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.81  E-value=0.32  Score=40.17  Aligned_cols=71  Identities=13%  Similarity=0.181  Sum_probs=53.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ...|...++.|-|.+|...|.+|+..-...|....-+.   ...-.-||.-++.++.+||+|++|+..++.+|.
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh---~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~   83 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDH---DGFDAFCHAGLSGALAGLGRYDECLQSADRALR   83 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---H---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhccc---ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            45778888999999999999999998766554222222   334466888999999999999999999999995

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.79  E-value=0.043  Score=52.73  Aligned_cols=79  Identities=14%  Similarity=0.162  Sum_probs=63.3

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKL  371 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~  371 (469)
                      .+.-.|..+|..|+|..|+..|.+++...+..+..            ..++.+++.||..+|+++.|+..+++++     
T Consensus       182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~------------~dAl~klg~~~~~~g~~~~A~~~~~~vi-----  244 (263)
T PRK10803        182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA------------ADAMFKVGVIMQDKGDTAKAKAVYQQVI-----  244 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Confidence            44678999999999999999999999988865432            4567889999999999999988777766     


Q ss_pred             HHHHHHhhCCCCCCcchHHHHHHHHHH
Q 036950          372 DIKKALEIDPDNSLEAGWGVRMEYKLL  398 (469)
Q Consensus       372 ~~~~al~l~p~~~~~~~~~~~~~l~~~  398 (469)
                            +..|++.     .+.....++
T Consensus       245 ------~~yP~s~-----~a~~A~~rL  260 (263)
T PRK10803        245 ------KKYPGTD-----GAKQAQKRL  260 (263)
T ss_pred             ------HHCcCCH-----HHHHHHHHH
Confidence                  7788877     555444443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.78  E-value=0.092  Score=52.38  Aligned_cols=76  Identities=12%  Similarity=0.251  Sum_probs=61.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSF---SDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~---~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ...+..+|++++|..|+-.|.-||.++....-.   .......+..+.+-+..-+..||+++++.+-|+.+.-+.|.++
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln  258 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN  258 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence            357889999999999999999999999754211   1233445566667778889999999999999999999999877

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.59  E-value=0.024  Score=41.52  Aligned_cols=59  Identities=17%  Similarity=0.233  Sum_probs=40.6

Q ss_pred             hHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036950          343 LNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFA  418 (469)
Q Consensus       343 ~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~  418 (469)
                      +++|..+++.|+|++|+..+++++           +.+|++.     .+...+..+.....+..+.. ..|..+..
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l-----------~~~P~~~-----~a~~~lg~~~~~~g~~~~A~-~~~~~a~~   59 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQAL-----------KQDPDNP-----EAWYLLGRILYQQGRYDEAL-AYYERALE   59 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHH-----------CCSTTHH-----HHHHHHHHHHHHTT-HHHHH-HHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHH-----------HHCCCCH-----HHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence            367999999999999999888777           5566666     66666666666555555544 44555443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.57  E-value=0.023  Score=37.32  Aligned_cols=30  Identities=23%  Similarity=0.196  Sum_probs=26.4

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      +.+++|+|.+|..+|+|++|+..+.+++++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            467899999999999999999999999864

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.56  E-value=0.033  Score=57.51  Aligned_cols=88  Identities=11%  Similarity=0.104  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---------------
Q 036950          305 KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---------------  369 (469)
Q Consensus       305 ~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---------------  369 (469)
                      .+..-.+.|-.|....+...+             ..+++=|+..|.-.++|++|+.+++.||..+               
T Consensus       409 ~l~~i~~~fLeaa~~~~~~~D-------------pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA  475 (579)
T KOG1125|consen  409 HLAHIQELFLEAARQLPTKID-------------PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA  475 (579)
T ss_pred             HHHHHHHHHHHHHHhCCCCCC-------------hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence            344445566666666553111             2345556666777788888888888888877               


Q ss_pred             --------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 036950          370 --------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDV  410 (469)
Q Consensus       370 --------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~  410 (469)
                              +..|.+||+|.|+.-     .++-.|...-..+..+++.-+
T Consensus       476 N~~~s~EAIsAY~rALqLqP~yV-----R~RyNlgIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  476 NGNRSEEAISAYNRALQLQPGYV-----RVRYNLGISCMNLGAYKEAVK  519 (579)
T ss_pred             CCcccHHHHHHHHHHHhcCCCee-----eeehhhhhhhhhhhhHHHHHH
Confidence                    677888888888877     666666655555555554443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=95.48  E-value=0.14  Score=52.14  Aligned_cols=83  Identities=19%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHH
Q 036950          296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKK  375 (469)
Q Consensus       296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~  375 (469)
                      .|.-+++.+++.+|++.+++++...|+.               ..+..|+|.+|+++|++.+|+...+.           
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~---------------~~l~~~~a~all~~g~~~eai~~L~~-----------  399 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALALDPNS---------------PLLQLNLAQALLKGGKPQEAIRILNR-----------  399 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCc---------------cHHHHHHHHHHHhcCChHHHHHHHHH-----------
Confidence            5667778899999999999999988765               55788999999999999988775554           


Q ss_pred             HHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950          376 ALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD  409 (469)
Q Consensus       376 al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e  409 (469)
                      .+.-+|+|.     ..+..|.+....+....+..
T Consensus       400 ~~~~~p~dp-----~~w~~LAqay~~~g~~~~a~  428 (484)
T COG4783         400 YLFNDPEDP-----NGWDLLAQAYAELGNRAEAL  428 (484)
T ss_pred             HhhcCCCCc-----hHHHHHHHHHHHhCchHHHH
Confidence            447788888     88888888777665554443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=95.41  E-value=0.1  Score=45.19  Aligned_cols=61  Identities=20%  Similarity=0.211  Sum_probs=49.9

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK  364 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~  364 (469)
                      .....|+.+|..|+|++|+..|..++...+.            ..+...+.+++|.|++.+++|++|+..++.
T Consensus        50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   50 AALQLAKAAYEQGDYDEAKAALEKALANAPD------------PELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            3456889999999999999999999984421            234566788999999999999999988765

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.40  E-value=0.024  Score=54.10  Aligned_cols=64  Identities=28%  Similarity=0.439  Sum_probs=54.7

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      |..+.+.|--+||.|+|+.|+.+|+.|+..-.+.               ..+-+|+|+||+..++|..|+++-++.++-
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq---------------pllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ---------------PLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhhcCCC---------------chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            4455678889999999999999999999875544               345689999999999999999999998864

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.37  E-value=0.11  Score=57.86  Aligned_cols=124  Identities=14%  Similarity=0.038  Sum_probs=75.5

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC-------------CHHHHHHHHH------HHHHhHhHHHHHHHH
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSF-------------SDEEKQQAKV------LKITCNLNNAACKLK  351 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~-------------~~e~~~~~~~------l~~~~~~N~a~~~~k  351 (469)
                      ....+.+-..|+.|+|..|+..|.++++..+..+..             .++-...++.      .....+..+|.+|..
T Consensus        35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN  114 (822)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            355788899999999999999999999988765311             0111111111      112234444668888


Q ss_pred             hhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 036950          352 LKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKK  408 (469)
Q Consensus       352 l~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~  408 (469)
                      +|+|++|+..++++++.+                       ++.++++...+|.+.     .. ..+..+........+ 
T Consensus       115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~-----~~-l~layL~~~~~~~~~-  187 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ-----NY-MTLSYLNRATDRNYD-  187 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH-----HH-HHHHHHHHhcchHHH-
Confidence            888888888888888887                       445555566666655     33 333333322222222 


Q ss_pred             HHHHHHHhhhhhh
Q 036950          409 DVQFYGNIFAKIN  421 (469)
Q Consensus       409 e~~~~~~mf~~~~  421 (469)
                      .-..|++++....
T Consensus       188 AL~~~ekll~~~P  200 (822)
T PRK14574        188 ALQASSEAVRLAP  200 (822)
T ss_pred             HHHHHHHHHHhCC
Confidence            5556777776643

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=95.35  E-value=0.27  Score=40.71  Aligned_cols=75  Identities=15%  Similarity=0.021  Sum_probs=60.0

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      ++-..|+..|+.+++-.|+-+|++|+.........++.+..+.-.+.+...-|+|.-+-.+|+-+-.+++..-|-
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS   77 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS   77 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence            445689999999999999999999999887654344445555566667777899999999999999998877654

>smart00028 TPR Tetratricopeptide repeats

Probab=95.25  E-value=0.031  Score=33.35  Aligned_cols=29  Identities=34%  Similarity=0.403  Sum_probs=25.6

Q ss_pred             HhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          340 TCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       340 ~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .++.++|.||..+++|+.|+.++.+++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            36789999999999999999999888754

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.05  E-value=0.31  Score=44.70  Aligned_cols=87  Identities=20%  Similarity=0.142  Sum_probs=72.1

Q ss_pred             CCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHH
Q 036950          280 DMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAE  359 (469)
Q Consensus       280 ~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai  359 (469)
                      .|+.+|+   |.-+-++|+-+=.-|-+..|.--+++++.+.|..               ..+++-++.-+..-|+|+.|.
T Consensus        58 ~l~~eeR---A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m---------------~~vfNyLG~Yl~~a~~fdaa~  119 (297)
T COG4785          58 ALTDEER---AQLLFERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAY  119 (297)
T ss_pred             cCChHHH---HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc---------------HHHHHHHHHHHHhcccchHHH
Confidence            4555544   6667788888888888888999999999887754               567788899999999999999


Q ss_pred             HHHHHHHhhc-----------------------HHHHHHHHhhCCCCC
Q 036950          360 KLCSKVLELD-----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       360 ~~~~~al~~d-----------------------~~~~~~al~l~p~~~  384 (469)
                      +.++.++++|                       .+||.+-..-||+|.
T Consensus       120 eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         120 EAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             HHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            9999999999                       678888888899886

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.03  E-value=0.25  Score=46.92  Aligned_cols=64  Identities=14%  Similarity=0.199  Sum_probs=53.8

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ++.+.+-.+++.|+|..|...|..-++-+|...-.            ...++=|+.|++.+|+|++|...+..+++
T Consensus       143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k  206 (262)
T COG1729         143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVK  206 (262)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            37899999999999999999999999988876432            33556679999999999999888877774

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.96  E-value=0.24  Score=37.71  Aligned_cols=67  Identities=15%  Similarity=0.201  Sum_probs=53.9

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      .+....++|-.+|...+.++|+..++++++-....            +.+-.++.-++.+|...|+|.+++.++..=++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~------------~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDR------------EDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667799999999999999999999999977643            12344556679999999999999998876543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK15331 chaperone protein SicA; Provisional

Probab=94.94  E-value=0.16  Score=44.68  Aligned_cols=60  Identities=17%  Similarity=0.187  Sum_probs=50.4

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      +.-.|-.+-..++|+.|+..|..|..+...++..               +...|.||+.+++...|..++..|++
T Consensus        74 ~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p---------------~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331         74 TMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP---------------VFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc---------------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            3457777778899999999999999987766442               47789999999999999998888875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.86  E-value=0.18  Score=40.24  Aligned_cols=65  Identities=17%  Similarity=0.208  Sum_probs=49.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          299 VLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       299 ~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ...+.++|..|++...+..++.........      ........+|+|.++..+|++++|+..+++|+++-
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            356789999999999999987653321110      22345568999999999999999999999999764

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=94.74  E-value=0.076  Score=53.88  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=53.7

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      +.-+..++..+.++++|+.|+...++|+.+.|..               -.+|..||.||.++|+|+.|+...+.+=
T Consensus       234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~---------------f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSE---------------FETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh---------------HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            3345568999999999999999999999998865               6689999999999999999998777554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=94.62  E-value=0.21  Score=41.88  Aligned_cols=64  Identities=20%  Similarity=0.049  Sum_probs=52.2

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      +.+.+..+-..|+..+|+..|.+|+..-..            ......++.++|.+|..+|++++|+...++++.-
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~   67 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLS------------GADRRRALIQLASTLRNLGRYDEALALLEEALEE   67 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456788888999999999999999984221            1223557889999999999999999999988865

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.62  E-value=0.94  Score=42.09  Aligned_cols=115  Identities=23%  Similarity=0.368  Sum_probs=76.6

Q ss_pred             HHHHhhhcHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHH
Q 036950          286 KIEAAGKKKEEGNVLFKA--GKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCS  363 (469)
Q Consensus       286 ~~~~a~~~k~~Gn~~fk~--~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~  363 (469)
                      ++..|.+.+-.--++|..  .++.+||.+|+.|-+++...         +......+|++-.|.--..+++|.+||..++
T Consensus       108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iye  178 (288)
T KOG1586|consen  108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYE  178 (288)
T ss_pred             HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444333444433  58999999999999988753         2233445666666777777899999999999


Q ss_pred             HHHhhc------------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          364 KVLELD------------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFY  413 (469)
Q Consensus       364 ~al~~d------------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~  413 (469)
                      ++....                              ...+++-.+++|.-.     + .++.+-++..+..-++..-..|
T Consensus       179 qva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~-----d-sREckflk~L~~aieE~d~e~f  252 (288)
T KOG1586|consen  179 QVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT-----D-SRECKFLKDLLDAIEEQDIEKF  252 (288)
T ss_pred             HHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc-----c-cHHHHHHHHHHHHHhhhhHHHH
Confidence            888654                              455777778899876     3 3566666666666666555444


Q ss_pred             HH
Q 036950          414 GN  415 (469)
Q Consensus       414 ~~  415 (469)
                      ..
T Consensus       253 te  254 (288)
T KOG1586|consen  253 TE  254 (288)
T ss_pred             HH
Confidence            43

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.59  E-value=0.063  Score=34.39  Aligned_cols=28  Identities=32%  Similarity=0.516  Sum_probs=23.8

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYI  320 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~  320 (469)
                      +...|+.+++.|+|++|+..|+++|.+-
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4578999999999999999999988654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=94.41  E-value=0.16  Score=53.99  Aligned_cols=78  Identities=14%  Similarity=0.241  Sum_probs=57.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHH
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIK  374 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~  374 (469)
                      -.|+-.+.+++|.+|.++++.++.+.+               +....|++++.|++++++++.|.+++..++        
T Consensus       490 ~~~~~~~~~~~fs~~~~hle~sl~~np---------------lq~~~wf~~G~~ALqlek~q~av~aF~rcv--------  546 (777)
T KOG1128|consen  490 SLALLILSNKDFSEADKHLERSLEINP---------------LQLGTWFGLGCAALQLEKEQAAVKAFHRCV--------  546 (777)
T ss_pred             hhccccccchhHHHHHHHHHHHhhcCc---------------cchhHHHhccHHHHHHhhhHHHHHHHHHHh--------
Confidence            344455667899999999999988644               447789999999999999999987666655        


Q ss_pred             HHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          375 KALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       375 ~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                         .++|+|.     ++...+....-++.
T Consensus       547 ---tL~Pd~~-----eaWnNls~ayi~~~  567 (777)
T KOG1128|consen  547 ---TLEPDNA-----EAWNNLSTAYIRLK  567 (777)
T ss_pred             ---hcCCCch-----hhhhhhhHHHHHHh
Confidence               6677776     55555555544443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=94.37  E-value=0.54  Score=45.66  Aligned_cols=38  Identities=24%  Similarity=0.306  Sum_probs=28.3

Q ss_pred             ccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036950          278 SWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVN  318 (469)
Q Consensus       278 ~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~  318 (469)
                      ..+++.++|   ...+-+.|.+|.+.|-|++|-..|...++
T Consensus        98 spdlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~d  135 (389)
T COG2956          98 SPDLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVD  135 (389)
T ss_pred             CCCCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence            345566665   34556789999999999999998877665

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.26  E-value=0.059  Score=33.26  Aligned_cols=27  Identities=22%  Similarity=0.416  Sum_probs=24.1

Q ss_pred             hHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          341 CNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       341 ~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      +++++|.||.++|++++|+..++++++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            468999999999999999998888774

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=93.99  E-value=1  Score=43.70  Aligned_cols=72  Identities=24%  Similarity=0.230  Sum_probs=55.7

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      +.+..+...||.+-..++|.+|...|.+|..+......         ......+|.+.+.||.+. ++.+|+.++++|++
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~---------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~  102 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD---------KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE  102 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH
Confidence            45666677888888899999999999999988753211         223366788888888777 99999999999998


Q ss_pred             hc
Q 036950          368 LD  369 (469)
Q Consensus       368 ~d  369 (469)
                      +-
T Consensus       103 ~y  104 (282)
T PF14938_consen  103 IY  104 (282)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=93.94  E-value=0.53  Score=39.40  Aligned_cols=76  Identities=18%  Similarity=0.149  Sum_probs=62.2

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKL  371 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~  371 (469)
                      .+...|..+...|++++|+...++++.-.+.+.            +...+...+|+|+..+|++++|+..+-.+|.-...
T Consensus        40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~------------~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~  107 (120)
T PF12688_consen   40 ALIQLASTLRNLGRYDEALALLEEALEEFPDDE------------LNAALRVFLALALYNLGRPKEALEWLLEALAETLP  107 (120)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            455789999999999999999999998766532            12456677899999999999999999999876666


Q ss_pred             HHHHHHhh
Q 036950          372 DIKKALEI  379 (469)
Q Consensus       372 ~~~~al~l  379 (469)
                      .|++++..
T Consensus       108 ~y~ra~~~  115 (120)
T PF12688_consen  108 RYRRAIRF  115 (120)
T ss_pred             HHHHHHHH
Confidence            77777654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=93.87  E-value=1.3  Score=40.63  Aligned_cols=65  Identities=14%  Similarity=0.081  Sum_probs=45.4

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh-----------CHHHHHHH
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK-----------EYKQAEKL  361 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~-----------~~~~ai~~  361 (469)
                      ....|..+|+.++|..|+..|++-++..|..+..            .-++.-+|.|++++.           ...+|+..
T Consensus        45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~  112 (203)
T PF13525_consen   45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEE  112 (203)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHHHHH
Confidence            4578999999999999999999999998876432            234555666665543           34578888


Q ss_pred             HHHHHhhc
Q 036950          362 CSKVLELD  369 (469)
Q Consensus       362 ~~~al~~d  369 (469)
                      ++..++.-
T Consensus       113 ~~~li~~y  120 (203)
T PF13525_consen  113 FEELIKRY  120 (203)
T ss_dssp             HHHHHHH-
T ss_pred             HHHHHHHC
Confidence            88888665

>TIGR00540 hemY_coli hemY protein

Probab=93.69  E-value=1.4  Score=45.26  Aligned_cols=101  Identities=18%  Similarity=0.191  Sum_probs=76.1

Q ss_pred             HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950          286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV  365 (469)
Q Consensus       286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a  365 (469)
                      +.+.+.+.-.+|--.+..|+|..|.+...++.+..+..               ...+.-.|.++..+|+++.|..+..++
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~---------------~~~~llaA~aa~~~g~~~~A~~~l~~a  144 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP---------------VLNLIKAAEAAQQRGDEARANQHLEEA  144 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            56678888899999999999999999999998865432               334445577788888888888888887


Q ss_pred             Hhhc------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          366 LELD------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       366 l~~d------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                      .+..                        ...++..++..|+|.     .+...+..+....+...
T Consensus       145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~-----~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK-----EVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhhHH
Confidence            6653                        456777788899998     77776666655554443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.67  E-value=2.1  Score=40.35  Aligned_cols=101  Identities=17%  Similarity=0.143  Sum_probs=70.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC-------------CCHHHHHHHHHHH------HHhHhHHHHHHHHhhCH
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSS-------------FSDEEKQQAKVLK------ITCNLNNAACKLKLKEY  355 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~-------------~~~e~~~~~~~l~------~~~~~N~a~~~~kl~~~  355 (469)
                      -.|-.+=..|+|++|+..|...+.-.|.+..             .+-+-.+++++..      .-++--+|-.|+.+++|
T Consensus        91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f  170 (289)
T KOG3060|consen   91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF  170 (289)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence            3556666778999999999988875543311             1112223333332      23567789999999999


Q ss_pred             HHHHHHHHHHHhhc--------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 036950          356 KQAEKLCSKVLELD--------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKE  400 (469)
Q Consensus       356 ~~ai~~~~~al~~d--------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~  400 (469)
                      .+|.-++++++=+.                          +..|.++++++|.|.     .+.-.+-.+-.
T Consensus       171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~-----ral~GI~lc~~  236 (289)
T KOG3060|consen  171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL-----RALFGIYLCGS  236 (289)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH-----HHHHHHHHHHH
Confidence            99999999999777                          678999999999776     55544444433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=93.60  E-value=1.1  Score=45.71  Aligned_cols=100  Identities=17%  Similarity=0.194  Sum_probs=72.9

Q ss_pred             HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950          286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV  365 (469)
Q Consensus       286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a  365 (469)
                      +.+++.+...+|-..+-.|+|..|.+.-.++-...+.               -...|...|.+..++|+++.|..++.++
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~---------------p~l~~llaA~aA~~~g~~~~A~~~l~~A  144 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ---------------PVVNYLLAAEAAQQRGDEARANQHLERA  144 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc---------------hHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5667777788899999999999998666665543211               0222444466669999999999999999


Q ss_pred             Hhhc------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950          366 LELD------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY  405 (469)
Q Consensus       366 l~~d------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~  405 (469)
                      .+.+                        .+.++++.+.+|+|.     .+...+..+....++.
T Consensus       145 ~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~-----~al~ll~~~~~~~gdw  203 (398)
T PRK10747        145 AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP-----EVLRLAEQAYIRTGAW  203 (398)
T ss_pred             HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHHhH
Confidence            9876                        456788888999998     7777777666554433

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.58  E-value=1.1  Score=43.01  Aligned_cols=62  Identities=18%  Similarity=0.186  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          308 RASKRYEQAVNYIGYD------SSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       308 ~A~~~Y~~al~~~~~~------~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .-+..|.+.+..+..+      ..+.+++.+.+..++..++.-.|..|++.|.|.+|+..|+++|.+|
T Consensus       242 ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltld  309 (361)
T COG3947         242 LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD  309 (361)
T ss_pred             cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Confidence            3455566666655322      3455678888999999998888999999999999999999998766

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.49  E-value=0.27  Score=48.15  Aligned_cols=56  Identities=29%  Similarity=0.431  Sum_probs=44.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      .|-.+|..|+|++|+..|+-+..-  .+++             ..+..|+|-|++-+|.|.+|.....+|-
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~--~~~~-------------~el~vnLAcc~FyLg~Y~eA~~~~~ka~  118 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNK--DDAP-------------AELGVNLACCKFYLGQYIEAKSIAEKAP  118 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhcc--CCCC-------------cccchhHHHHHHHHHHHHHHHHHHhhCC
Confidence            467889999999999999988872  2222             4577899999999999999987766653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.38  E-value=0.84  Score=39.24  Aligned_cols=88  Identities=17%  Similarity=0.228  Sum_probs=62.1

Q ss_pred             ccCCChHHHH--HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCH
Q 036950          278 SWDMNTQEKI--EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEY  355 (469)
Q Consensus       278 ~~~l~~~e~~--~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~  355 (469)
                      .|-....+.+  .....+...+..+...|+|..|+..+.+++...|.+               ..+|.-+-.||..+|++
T Consensus        48 ~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---------------E~~~~~lm~~~~~~g~~  112 (146)
T PF03704_consen   48 EWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD---------------EEAYRLLMRALAAQGRR  112 (146)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----------------HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHCcCH
Confidence            4544444443  344455677888889999999999999999998876               56788889999999999


Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHhhCCCCC
Q 036950          356 KQAEKLCSKVLELDKLDIKKALEIDPDNS  384 (469)
Q Consensus       356 ~~ai~~~~~al~~d~~~~~~al~l~p~~~  384 (469)
                      ..|+..+++.-    ..+..-+.+.|+..
T Consensus       113 ~~A~~~Y~~~~----~~l~~elg~~Ps~~  137 (146)
T PF03704_consen  113 AEALRVYERYR----RRLREELGIEPSPE  137 (146)
T ss_dssp             HHHHHHHHHHH----HHHHHHHS----HH
T ss_pred             HHHHHHHHHHH----HHHHHHhCcCcCHH
Confidence            99999999876    35555566667643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.23  E-value=0.21  Score=33.48  Aligned_cols=31  Identities=13%  Similarity=0.049  Sum_probs=28.0

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYD  323 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~  323 (469)
                      +...|..+...|++++|++.|+++++..|.+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            4567899999999999999999999998876

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=93.18  E-value=0.25  Score=49.33  Aligned_cols=60  Identities=17%  Similarity=0.051  Sum_probs=49.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      -..|..+...|+|.+|+..|++++...+.+               ..++.++|.+|..+|++++|+..+++++..
T Consensus       118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         118 GMLAFGLEEAGQYDRAEEAARRALELNPDD---------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence            356778899999999999999999987655               456778888888888888888888888865

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.13  E-value=0.25  Score=41.82  Aligned_cols=50  Identities=22%  Similarity=0.371  Sum_probs=40.0

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                      ..|.+-+|..|.++++|+.++.+|+..|           +.+|+|.     ++...-..+++++.+
T Consensus        71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll-----------~~e~~n~-----Qa~~Lk~~ied~itk  120 (149)
T KOG3364|consen   71 RECLYYLAVGHYRLKEYSKSLRYVDALL-----------ETEPNNR-----QALELKETIEDKITK  120 (149)
T ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHH-----------hhCCCcH-----HHHHHHHHHHHHHhh
Confidence            3466778999999999999999988766           8899999     777776666665543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.09  E-value=0.39  Score=48.06  Aligned_cols=100  Identities=15%  Similarity=0.051  Sum_probs=65.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcCCCC-----------CCHHHHHHH----------HHHHHHhHhHHHHHHHHhhCHH
Q 036950          298 NVLFKAGKYERASKRYEQAVNYIGYDSS-----------FSDEEKQQA----------KVLKITCNLNNAACKLKLKEYK  356 (469)
Q Consensus       298 n~~fk~~~~~~A~~~Y~~al~~~~~~~~-----------~~~e~~~~~----------~~l~~~~~~N~a~~~~kl~~~~  356 (469)
                      -.|...|++.+|...-..+++.++....           .+.-..+..          ++-+..+-+-+|--++.-|.+.
T Consensus       376 hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~  455 (564)
T KOG1174|consen  376 HSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK  455 (564)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence            3455667777777776666666654311           111111111          2223334445677777788899


Q ss_pred             HHHHHHHHHHhhc----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          357 QAEKLCSKVLELD----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       357 ~ai~~~~~al~~d----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                      ++|...++.|...                      +..|..||.+||+|+     ...+.++++++..
T Consensus       456 D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~-----~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  456 DIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK-----RTLRGLRLLEKSD  518 (564)
T ss_pred             hHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch-----HHHHHHHHHHhcc
Confidence            9999998888765                      678999999999999     8888888876554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=92.88  E-value=0.6  Score=45.09  Aligned_cols=94  Identities=19%  Similarity=0.206  Sum_probs=59.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      ......+++.++|.++.....++.......             -...++.-+|.++.+.|++++|+.++++||+++    
T Consensus       114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~  180 (280)
T PF13429_consen  114 LSALQLYYRLGDYDEAEELLEKLEELPAAP-------------DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP  180 (280)
T ss_dssp             ----H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhccCCC-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            345556788899999998888877532110             115678889999999999999999999999887    


Q ss_pred             -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950          370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY  405 (469)
Q Consensus       370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~  405 (469)
                                         .+.++...+..|+|.     .+...+..+...+...
T Consensus       181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~la~~~~~lg~~  230 (280)
T PF13429_consen  181 DARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-----DLWDALAAAYLQLGRY  230 (280)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC-----CHCHHHHHHHHHHT-H
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH-----HHHHHHHHHhcccccc
Confidence                               223444455556666     5555555555555443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=92.86  E-value=3.7  Score=43.50  Aligned_cols=92  Identities=12%  Similarity=0.057  Sum_probs=63.1

Q ss_pred             cHHHHHHHHhcCC---HHHHHHHHHHHHHHhcCCCC--------------CC---HHHHHHHHHH-H-----------HH
Q 036950          293 KKEEGNVLFKAGK---YERASKRYEQAVNYIGYDSS--------------FS---DEEKQQAKVL-K-----------IT  340 (469)
Q Consensus       293 ~k~~Gn~~fk~~~---~~~A~~~Y~~al~~~~~~~~--------------~~---~e~~~~~~~l-~-----------~~  340 (469)
                      +.-+|..++...+   +..|+.+|++|+...|.+..              +.   +......... .           ..
T Consensus       342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~  421 (517)
T PRK10153        342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR  421 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH
Confidence            3456777776555   88999999999998876511              11   1111111111 1           13


Q ss_pred             hHhHHHHHHHHhhCHHHHHHHHHHHHhhc----------------------HHHHHHHHhhCCCCC
Q 036950          341 CNLNNAACKLKLKEYKQAEKLCSKVLELD----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d----------------------~~~~~~al~l~p~~~  384 (469)
                      +|.=+|..++..|+|++|...+++|++++                      .+.+++|+.++|.+.
T Consensus       422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        422 IYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            34456777778899999999999999988                      567888899999876

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.84  E-value=0.96  Score=43.83  Aligned_cols=87  Identities=22%  Similarity=0.234  Sum_probs=68.2

Q ss_pred             CCChHHHHHHhhhcHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHH
Q 036950          280 DMNTQEKIEAAGKKKEEGNVLFKAG-KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQA  358 (469)
Q Consensus       280 ~l~~~e~~~~a~~~k~~Gn~~fk~~-~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~a  358 (469)
                      .+++......+..+.+-|..+++++ +|..|+...++|.++++.... .+.......+++..++..+|.||+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            4577788899999999999999999 999999999999999864211 11222345778899999999999999988655


Q ss_pred             HHHHHHHHhh
Q 036950          359 EKLCSKVLEL  368 (469)
Q Consensus       359 i~~~~~al~~  368 (469)
                      .. |..+++.
T Consensus       104 ~k-a~~~l~~  112 (278)
T PF08631_consen  104 EK-ALNALRL  112 (278)
T ss_pred             HH-HHHHHHH
Confidence            55 6665543

It is also involved in sporulation [].

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.66  E-value=0.82  Score=46.60  Aligned_cols=99  Identities=24%  Similarity=0.272  Sum_probs=65.0

Q ss_pred             HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhC---HHHHHHHH
Q 036950          286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE---YKQAEKLC  362 (469)
Q Consensus       286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~---~~~ai~~~  362 (469)
                      .+.........|-.+|+.|+|.+|+..|+..|..++-....+.++..+++++...|.--+-.+.+.+.+   -+....+-
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~  279 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ  279 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence            334444455679999999999999999999999988766666688888888888876555555555443   12233344


Q ss_pred             HHHHhhc-------------HHHHHHHHhhCCCCC
Q 036950          363 SKVLELD-------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       363 ~~al~~d-------------~~~~~~al~l~p~~~  384 (469)
                      .+.|++-             .-.|+.|+.+.=..+
T Consensus       280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~K  314 (422)
T PF06957_consen  280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLK  314 (422)
T ss_dssp             HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTT
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence            4555544             446777777765555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.63  E-value=1.6  Score=45.72  Aligned_cols=114  Identities=20%  Similarity=0.291  Sum_probs=69.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHH---------------H----HHHHHHHhHhHHHHHHHHhhCH
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQ---------------Q----AKVLKITCNLNNAACKLKLKEY  355 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~---------------~----~~~l~~~~~~N~a~~~~kl~~~  355 (469)
                      -+|..+|+.++|++|+..|+..++--..+   .+++..               +    ..+---.+++|.|-.++..|+|
T Consensus       115 L~AQvlYrl~~ydealdiY~~L~kn~~dd---~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  115 LRAQVLYRLERYDEALDIYQHLAKNNSDD---QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            47899999999999999999887632211   111110               0    0001233789999999999999


Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhh
Q 036950          356 KQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY------NKKDVQFYGNIFAK  419 (469)
Q Consensus       356 ~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~------~~~e~~~~~~mf~~  419 (469)
                      .+|++...+|+.+..   ++...-|-++.     ++..++.-|+-.+.-.      .+...++|..+.+.
T Consensus       192 ~qA~elL~kA~~~~~---e~l~~~d~~eE-----eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~  253 (652)
T KOG2376|consen  192 NQAIELLEKALRICR---EKLEDEDTNEE-----EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR  253 (652)
T ss_pred             HHHHHHHHHHHHHHH---Hhhcccccchh-----hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            999999999985432   22222233334     6666666665544322      23334455555544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=92.53  E-value=1.6  Score=42.01  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=29.6

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD  323 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~  323 (469)
                      ++.+--.|..++..+++..|...|.+|+++.+..
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n  189 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDN  189 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC
Confidence            4455568999999999999999999999998765

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=92.42  E-value=1.6  Score=42.00  Aligned_cols=99  Identities=14%  Similarity=0.080  Sum_probs=74.1

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---------------
Q 036950          305 KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---------------  369 (469)
Q Consensus       305 ~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---------------  369 (469)
                      ..+.-+..-+.-|...|.+               ..-+.=++.+|+.++++..|...+.+|+++.               
T Consensus       137 ~~~~l~a~Le~~L~~nP~d---------------~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~  201 (287)
T COG4235         137 EMEALIARLETHLQQNPGD---------------AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALY  201 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCC---------------chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3444455555556655555               3345668999999999999999999999998               


Q ss_pred             -----------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhch
Q 036950          370 -----------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLE  424 (469)
Q Consensus       370 -----------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~~~  424 (469)
                                 ..-|++++.+||+|-     .+...|....-....+.+.- ..|..|++.....+
T Consensus       202 ~~a~~~~ta~a~~ll~~al~~D~~~i-----ral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~~~  261 (287)
T COG4235         202 YQAGQQMTAKARALLRQALALDPANI-----RALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPADD  261 (287)
T ss_pred             HhcCCcccHHHHHHHHHHHhcCCccH-----HHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCCCC
Confidence                       567999999999999     88888887766655555443 45888887765443

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.11  E-value=1.9  Score=32.68  Aligned_cols=60  Identities=15%  Similarity=0.095  Sum_probs=47.4

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQ  411 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~  411 (469)
                      +.-|..+|.-+=+.|+|.+|+.++++++    +.|.+++...|++.         .....+.++.++..+-..
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aI----e~L~q~~~~~pD~~---------~k~~yr~ki~eY~~Rae~   65 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAI----EVLSQIVKNYPDSP---------TRLIYEQMINEYKRRIEV   65 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HHHHHHHHhCCChH---------HHHHHHHHHHHHHHHHHH
Confidence            4567788888899999999999999999    57999999999988         344456666666555543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=91.65  E-value=4.8  Score=36.30  Aligned_cols=62  Identities=24%  Similarity=0.365  Sum_probs=52.7

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIG-YDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~-~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ....||.+-..|+|.+|...|++++.-+- .+               ..+++.+|.+++.++++..|....++..+.+
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d---------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~  154 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAHD---------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN  154 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence            34689999999999999999999997432 22               5677889999999999999999999999887

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=91.61  E-value=0.55  Score=46.80  Aligned_cols=65  Identities=15%  Similarity=0.097  Sum_probs=53.7

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      +...|..++..|++++|+..|.+++...+..+           .....+|.++|.+|+.+|++++|+..+++++..
T Consensus       151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~-----------~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS-----------MLRGHNWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc-----------chhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            45678999999999999999999998765321           123557789999999999999999999998744

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=91.57  E-value=1.4  Score=41.44  Aligned_cols=77  Identities=17%  Similarity=0.174  Sum_probs=63.7

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---  369 (469)
                      +-.+|-.|-+.|++..|...|.+|+++.+..               ...++|++..|+=.|+++.|......+...-   
T Consensus       137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---------------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad  201 (257)
T COG5010         137 WNLLGAALDQLGRFDEARRAYRQALELAPNE---------------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD  201 (257)
T ss_pred             hhHHHHHHHHccChhHHHHHHHHHHHhccCC---------------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence            3478999999999999999999999999877               5578999999999999999999998887654   


Q ss_pred             ---HHHHHHHHhhCCCCC
Q 036950          370 ---KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 ---~~~~~~al~l~p~~~  384 (469)
                         .+++-.+..+.++-.
T Consensus       202 ~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         202 SRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             hHHHHHHHHHHhhcCChH
Confidence               555555555555544

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.54  E-value=1  Score=34.18  Aligned_cols=62  Identities=18%  Similarity=0.102  Sum_probs=42.8

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhHhHHHHHH
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDS-SFSDEEKQQAKVLKITCNLNNAACK  349 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~-~~~~e~~~~~~~l~~~~~~N~a~~~  349 (469)
                      +.|..+-.++.++=+.|+|.+|+.+|++|+..+-..- ...++.....-.-++.=|.||+...
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~L   66 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVL   66 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888999999999999999999999885432 1222333444444466667777543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=91.51  E-value=0.91  Score=47.92  Aligned_cols=93  Identities=18%  Similarity=0.177  Sum_probs=68.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      -.+.-.+|..++|...++.-+..|+-.+.-.+             ..  .=.++....+|+-++|...|..++..|    
T Consensus        11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge-------------sl--AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~   75 (700)
T KOG1156|consen   11 FRRALKCYETKQYKKGLKLIKQILKKFPEHGE-------------SL--AMKGLTLNCLGKKEEAYELVRLGLRNDLKSH   75 (700)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhCCccch-------------hH--HhccchhhcccchHHHHHHHHHHhccCcccc
Confidence            34556778888888888888888774432110             00  112555566888888888888888887    


Q ss_pred             -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                                         +.+|+.|++++|+|.     ++.+-|.-++..++.+.
T Consensus        76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~-----qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL-----QILRDLSLLQIQMRDYE  126 (700)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHhhh
Confidence                               678899999999999     99999988888777664

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=91.47  E-value=4.5  Score=36.19  Aligned_cols=60  Identities=23%  Similarity=0.357  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCH---HHHHHHHHHHHhhcHHHHHHHHhhCCC
Q 036950          306 YERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEY---KQAEKLCSKVLELDKLDIKKALEIDPD  382 (469)
Q Consensus       306 ~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~---~~ai~~~~~al~~d~~~~~~al~l~p~  382 (469)
                      |+.|.+.|+......|.+               +..++|-+.+++.|.++   .++....+.|+    .-|+.||.++|+
T Consensus         7 FE~ark~aea~y~~nP~D---------------adnL~~WG~ALLELAqfk~g~es~~miedAi----sK~eeAL~I~P~   67 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLD---------------ADNLTNWGGALLELAQFKQGPESKKMIEDAI----SKFEEALKINPN   67 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT----------------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH----HHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHHhCcHh---------------HHHHHHHHHHHHHHHhccCcchHHHHHHHHH----HHHHHHHhcCCc
Confidence            677888888888776655               66778999999998776   44666666665    688889999998


Q ss_pred             CC
Q 036950          383 NS  384 (469)
Q Consensus       383 ~~  384 (469)
                      ..
T Consensus        68 ~h   69 (186)
T PF06552_consen   68 KH   69 (186)
T ss_dssp             -H
T ss_pred             hH
Confidence            87

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.45  E-value=0.85  Score=34.69  Aligned_cols=60  Identities=25%  Similarity=0.185  Sum_probs=42.9

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHhHhHHH
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY-DSSFSDEEKQQAKVLKITCNLNNA  346 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~-~~~~~~e~~~~~~~l~~~~~~N~a  346 (469)
                      +..|..+-.+|.+.=+.|+|.+|+.+|..||+++-. .....++..++.-..+..=|++||
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RA   63 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRA   63 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence            455677777888888999999999999999998854 222233455555555566667766

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.28  E-value=0.59  Score=45.63  Aligned_cols=51  Identities=31%  Similarity=0.417  Sum_probs=38.2

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          304 GKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       304 ~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+|++|...|++....++..               ..+++.+|.|++.+|+|++|.....+|++.+
T Consensus       181 e~~~~A~y~f~El~~~~~~t---------------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~  231 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGST---------------PKLLNGLAVCHLQLGHYEEAEELLEEALEKD  231 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--S---------------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred             hhHHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence            36888888888865533221               4567789999999999999999999988777

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.18  E-value=1.3  Score=39.84  Aligned_cols=66  Identities=23%  Similarity=0.226  Sum_probs=54.6

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      -..+.+.|+-+++.|+++.|++.|.++..++..            ....+.+++|+..+.+-+++|..+..+.++|-.
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            345568999999999999999999999987653            234567788999999999999999988887653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.17  E-value=1.2  Score=36.94  Aligned_cols=70  Identities=19%  Similarity=0.213  Sum_probs=53.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      -..-.+.+.|+|.+++..-.+||.|++..-.+.+++    -.+-+.+-+|+|.++--+|+.++|+..++.+-++
T Consensus        60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde----GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   60 GLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE----GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc----chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            455678899999999999999999998654444333    3345667789999999999999999999988754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=91.11  E-value=5  Score=37.99  Aligned_cols=49  Identities=6%  Similarity=-0.009  Sum_probs=39.1

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK  353 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~  353 (469)
                      ....|..+|+.++|..|+..|++.++..|..+..            .-++.-+|.|+..++
T Consensus        72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~------------~~a~Y~~g~~~~~~~  120 (243)
T PRK10866         72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVLYMRGLTNMALD  120 (243)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch------------HHHHHHHHHhhhhcc
Confidence            4588999999999999999999999999887554            335566677765554

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.11  E-value=0.75  Score=34.98  Aligned_cols=36  Identities=19%  Similarity=0.050  Sum_probs=31.5

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY  322 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~  322 (469)
                      ++.|..+-.+|...=..|+|++|+.+|..||.++-.
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            566778888889999999999999999999998853

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.11  E-value=0.93  Score=34.53  Aligned_cols=35  Identities=20%  Similarity=0.194  Sum_probs=29.7

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY  322 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~  322 (469)
                      ..|..+-.++.++=+.|+|.+|+.+|..||.++-.
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            34666777888888999999999999999998853

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=91.10  E-value=0.49  Score=29.30  Aligned_cols=31  Identities=23%  Similarity=0.314  Sum_probs=27.5

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIG  321 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~  321 (469)
                      +.+...|..+.+.|++++|+..|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4456789999999999999999999999765

...

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.06  E-value=0.83  Score=34.93  Aligned_cols=60  Identities=20%  Similarity=0.216  Sum_probs=40.1

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhHhHHHH
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDS-SFSDEEKQQAKVLKITCNLNNAA  347 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~-~~~~e~~~~~~~l~~~~~~N~a~  347 (469)
                      ..|..+-.+|.++=+.|+|.+|+.+|..||.++-..- ...++.....-.-++.-|.+||-
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE   64 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAE   64 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence            3466677788999999999999999999999885321 11223334444444555666663

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.03  E-value=0.93  Score=43.09  Aligned_cols=77  Identities=17%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHH
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDI  373 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~  373 (469)
                      .=.|+.+|.+|+|..|...|..+++-++..+...            -.++=++.|...+++.++|...+++++       
T Consensus       182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp------------dallKlg~~~~~l~~~d~A~atl~qv~-------  242 (262)
T COG1729         182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP------------DALLKLGVSLGRLGNTDEACATLQQVI-------  242 (262)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh------------HHHHHHHHHHHHhcCHHHHHHHHHHHH-------
Confidence            3479999999999999999999999888776543            245667999999999999988777766       


Q ss_pred             HHHHhhCCCCCCcchHHHHHHHHHH
Q 036950          374 KKALEIDPDNSLEAGWGVRMEYKLL  398 (469)
Q Consensus       374 ~~al~l~p~~~~~~~~~~~~~l~~~  398 (469)
                          +--|+..     .++.....+
T Consensus       243 ----k~YP~t~-----aA~~Ak~~~  258 (262)
T COG1729         243 ----KRYPGTD-----AAKLAKVAL  258 (262)
T ss_pred             ----HHCCCCH-----HHHHHHHHH
Confidence                6778877     555444443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=91.00  E-value=2.1  Score=48.02  Aligned_cols=30  Identities=20%  Similarity=0.190  Sum_probs=25.5

Q ss_pred             HhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          340 TCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       340 ~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .++..+|.||-++|++++|+..++++|++|
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D  146 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKAD  146 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            367889999999999999999888877544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=90.74  E-value=0.61  Score=46.65  Aligned_cols=69  Identities=20%  Similarity=0.142  Sum_probs=54.3

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +.++-.+|..+||.|++...+..|+.|+..=..+           -...+.+|+-++.+|+.+++|.+|+++-..=|.+.
T Consensus        17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeD-----------l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltla   85 (639)
T KOG1130|consen   17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTED-----------LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLA   85 (639)
T ss_pred             HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchH-----------HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHH
Confidence            4455678999999999999999999999864322           23447788899999999999998888877665544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=90.53  E-value=0.8  Score=48.47  Aligned_cols=59  Identities=12%  Similarity=-0.022  Sum_probs=52.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..|-.+...|++++|...|++|+.+.++                ...|..++.+|...|++++|+..+.+|+.++
T Consensus       425 ala~~~~~~g~~~~A~~~l~rAl~L~ps----------------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        425 ILAVQALVKGKTDEAYQAINKAIDLEMS----------------WLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3566667889999999999999997652                4578999999999999999999999999999

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=90.43  E-value=0.73  Score=47.10  Aligned_cols=31  Identities=19%  Similarity=0.097  Sum_probs=28.1

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ...|+|++.+|+++|+|++|+..|++||+++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~  105 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELN  105 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            6689999999999999999999999888655

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=90.22  E-value=0.66  Score=45.73  Aligned_cols=96  Identities=21%  Similarity=0.289  Sum_probs=71.9

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC----------CCCC-H----HH-------------HHHHHHHHHH
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD----------SSFS-D----EE-------------KQQAKVLKIT  340 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~----------~~~~-~----e~-------------~~~~~~l~~~  340 (469)
                      ++.+..+.|..+|...++.+|+..+++.+..+.+.          +... +    ++             ..+-..+...
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566788999999999999999999999877542          1100 0    00             0122334456


Q ss_pred             hHhHHHHHHHHhhCHHHHHHHHHHHHhhc----------------------------HHHHHHHHhhCCCCC
Q 036950          341 CNLNNAACKLKLKEYKQAEKLCSKVLELD----------------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d----------------------------~~~~~~al~l~p~~~  384 (469)
                      .|.|+|..+-++.+|.+++.+|.-.+.+-                            ++.|+.|++.-.++.
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~  156 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND  156 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC
Confidence            79999999999999999999999999886                            677888888766655

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.85  E-value=2.7  Score=41.09  Aligned_cols=99  Identities=16%  Similarity=0.219  Sum_probs=67.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCC----------CCCHHHH--------HHHHHHHHHhHhHHHHHHHHhhCHH
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDS----------SFSDEEK--------QQAKVLKITCNLNNAACKLKLKEYK  356 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~----------~~~~e~~--------~~~~~l~~~~~~N~a~~~~kl~~~~  356 (469)
                      ..|..+++.|-+.+|-..++.+|...+...          .+++.+.        -...+..++.++-+|..|-.|++++
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~  307 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE  307 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence            567777777777777777777776544221          0111110        0112233678889999999999999


Q ss_pred             HHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 036950          357 QAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLL  398 (469)
Q Consensus       357 ~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~  398 (469)
                      +|++.+..||+++                       +..+++.|.+.-.+.     ++-..+..|
T Consensus       308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp-----eLf~NigLC  367 (478)
T KOG1129|consen  308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP-----ELFCNIGLC  367 (478)
T ss_pred             HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh-----HHHhhHHHH
Confidence            9999999999988                       677888888877777     555554443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=89.63  E-value=1.5  Score=47.02  Aligned_cols=62  Identities=18%  Similarity=0.122  Sum_probs=55.5

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +...|-...+.++++.|...|++++.+.|+.               ...++|++.+|+++++-.+|.....+||+.+
T Consensus       522 wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~---------------~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  522 WFGLGCAALQLEKEQAAVKAFHRCVTLEPDN---------------AEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             HHhccHHHHHHhhhHHHHHHHHHHhhcCCCc---------------hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            3467888899999999999999999988765               5678999999999999999999999999888

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=89.58  E-value=2.3  Score=44.93  Aligned_cols=57  Identities=26%  Similarity=0.332  Sum_probs=44.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          298 NVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       298 n~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .-+...|+|++|+..-......+.+.               ...+--+|.|++++|++++|...+...|..+
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~I~Dk---------------~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN   68 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQILDK---------------LAVLEKRAELLLKLGRKEEAEKIYRELIDRN   68 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhhCCCH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            44556789999988887766654432               5667788999999999999999888877555

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=89.26  E-value=1.1  Score=33.28  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=29.9

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG  321 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~  321 (469)
                      ++.|..+-..|-.+=+.|+|.+|+.+|++|+.++.
T Consensus         2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~   36 (69)
T PF04212_consen    2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLM   36 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            35566777888888899999999999999999875

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=89.18  E-value=2.3  Score=36.52  Aligned_cols=76  Identities=13%  Similarity=0.149  Sum_probs=55.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      .+.|-.+|+.++|..|+..|.+-|++-|..+..+            -+++=+++|++++..  ..+...- ....|    
T Consensus        51 L~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd------------Ya~Y~~gL~~~~~~~--~~~~~~~-~~drD~~~~  115 (142)
T PF13512_consen   51 LDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD------------YAYYMRGLSYYEQDE--GSLQSFF-RSDRDPTPA  115 (142)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc------------HHHHHHHHHHHHHhh--hHHhhhc-ccccCcHHH
Confidence            4788999999999999999999999998876654            345667888888765  1111111 11122    


Q ss_pred             ---HHHHHHHHhhCCCCC
Q 036950          370 ---KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 ---~~~~~~al~l~p~~~  384 (469)
                         ..+|+.++..-|++.
T Consensus       116 ~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen  116 RQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHHHHHCcCCh
Confidence               567888888999987

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.15  E-value=1.5  Score=33.34  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=31.6

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY  322 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~  322 (469)
                      ++.|..+-.+|...=+.|+|++|+.+|..|+..+-.
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            566778888899999999999999999999998853

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=89.04  E-value=2.6  Score=39.34  Aligned_cols=63  Identities=14%  Similarity=0.097  Sum_probs=54.0

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      -..+++-.+++.++|..+.....+|+.+.++.               +..+.-+++|.+..+.|..||....+|..+-
T Consensus        46 Y~tnralchlk~~~~~~v~~dcrralql~~N~---------------vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   46 YYTNRALCHLKLKHWEPVEEDCRRALQLDPNL---------------VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             hhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH---------------HHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            34578888999999999999999999987754               7778889999999999999999999997654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=88.99  E-value=4.8  Score=42.72  Aligned_cols=73  Identities=21%  Similarity=0.160  Sum_probs=45.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCC----------------HHHHH---HHHHHHHHhHhHHHHHHHHhhCH
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFS----------------DEEKQ---QAKVLKITCNLNNAACKLKLKEY  355 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~----------------~e~~~---~~~~l~~~~~~N~a~~~~kl~~~  355 (469)
                      -.|--+-..++|.+|+++|+.|+..-+++...-                -+.+.   +.+.-....|.-.|.++.-+|+|
T Consensus        80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y  159 (700)
T KOG1156|consen   80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY  159 (700)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            456666677899999999999999776541100                01111   22222334556667778888888


Q ss_pred             HHHHHHHHHHHh
Q 036950          356 KQAEKLCSKVLE  367 (469)
Q Consensus       356 ~~ai~~~~~al~  367 (469)
                      ..|+...+.-.+
T Consensus       160 ~~A~~il~ef~~  171 (700)
T KOG1156|consen  160 KMALEILEEFEK  171 (700)
T ss_pred             HHHHHHHHHHHH
Confidence            888776655544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.88  E-value=0.64  Score=43.92  Aligned_cols=63  Identities=17%  Similarity=0.206  Sum_probs=51.5

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      -.++.+--+.-.++|..|.+.|.+++...+.+               +..-+|-|+|++.+|+..+|++..+.+++.+
T Consensus       254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~---------------~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN---------------AVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             HHhhhhhheecccchHHHHHHHhhccccCCCc---------------hhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            34556666778899999999999999877665               5567899999999999999998887777544

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=88.66  E-value=1.9  Score=41.05  Aligned_cols=64  Identities=19%  Similarity=0.202  Sum_probs=52.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      +.|.++|+.|+|++|+..|+.+...+... .        =..+...+..++..|+.++++.+..+..|-+.+.
T Consensus       183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~e-g--------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls  246 (247)
T PF11817_consen  183 EMAEEYFRLGDYDKALKLLEPAASSYRRE-G--------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS  246 (247)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhC-C--------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            79999999999999999999997655421 1        1345677888999999999999999999987764

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.64  E-value=0.9  Score=29.36  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=26.9

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY  322 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~  322 (469)
                      |..+.+.|+.++..|+|.+|...|.+++.....
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            455678999999999999999999999987653

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=88.46  E-value=1.7  Score=46.84  Aligned_cols=87  Identities=15%  Similarity=0.097  Sum_probs=61.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----------
Q 036950          300 LFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----------  369 (469)
Q Consensus       300 ~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----------  369 (469)
                      +.+.++-++|..+-.+|-..++.               .+..|.=++.|+...|++.+|...+..|+.+|          
T Consensus       660 ~~~~~~~~~a~~CL~Ea~~~~~l---------------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al  724 (799)
T KOG4162|consen  660 FLLSGNDDEARSCLLEASKIDPL---------------SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL  724 (799)
T ss_pred             HHhcCCchHHHHHHHHHHhcchh---------------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            33444455555677777665543               36666667788888888888888888888877          


Q ss_pred             ---------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          370 ---------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       370 ---------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                                     ..-+..|+++||.|.     +++..+..+-+++....
T Consensus       725 a~~lle~G~~~la~~~~~L~dalr~dp~n~-----eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  725 AELLLELGSPRLAEKRSLLSDALRLDPLNH-----EAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             HHHHHHhCCcchHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHccchH
Confidence                           225777889999998     88888888877765554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=88.42  E-value=4.9  Score=42.09  Aligned_cols=66  Identities=23%  Similarity=0.307  Sum_probs=55.9

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +-.+|.-+..+|+.+.|++.|++|+..-        .+   .+++...|+..++.||+-+.+|++|..++.+.++..
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q--------~~---~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s  335 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQ--------SE---WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES  335 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccch--------hh---HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence            3468889999999999999999999421        22   445667899999999999999999999999999876

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.18  E-value=2.5  Score=31.98  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=30.1

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY  322 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~  322 (469)
                      ++.|..+-..|..+=+.|+|++|+.+|..|+..+-.
T Consensus         3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~   38 (75)
T cd02656           3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            455667777888888899999999999999998854

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=88.05  E-value=2.1  Score=45.24  Aligned_cols=66  Identities=14%  Similarity=0.079  Sum_probs=52.6

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHH
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEY  395 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l  395 (469)
                      .-+++.+|++|.++|+|++|+.+.++||+..                       .+.+..|-.+|+.|+     -++...
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR-----yiNsK~  268 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR-----YINSKC  268 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH-----HHHHHH
Confidence            4467889999999999999999999999998                       556788888999999     777777


Q ss_pred             HHHHHHHHHHHHHH
Q 036950          396 KLLKEKVREYNKKD  409 (469)
Q Consensus       396 ~~~~~~~~~~~~~e  409 (469)
                      .+..-+-....+.+
T Consensus       269 aKy~LRa~~~e~A~  282 (517)
T PF12569_consen  269 AKYLLRAGRIEEAE  282 (517)
T ss_pred             HHHHHHCCCHHHHH
Confidence            66655544444444

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10941 hypothetical protein; Provisional

Probab=87.89  E-value=2.9  Score=40.26  Aligned_cols=50  Identities=16%  Similarity=0.107  Sum_probs=45.6

Q ss_pred             HHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCC
Q 036950          335 KVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       335 ~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~  384 (469)
                      ..+......|+=.+|++.++|+.|+.+++.+|.++                       ..||+..++..|++.
T Consensus       177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp  249 (269)
T PRK10941        177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP  249 (269)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence            44667788999999999999999999999999998                       789999999999988

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=87.47  E-value=8.7  Score=37.61  Aligned_cols=68  Identities=18%  Similarity=0.171  Sum_probs=37.2

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      ++.|.-.-+.+..+....+++.|.....+|+...+.+               +.+-.-++..++..|+|..|++..+.++
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c---------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~  241 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKC---------------VRASIILGRVELAKGDYQKAVEALERVL  241 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc---------------eehhhhhhHHHHhccchHHHHHHHHHHH
Confidence            3444455555555666666666666666666554433               1122233555555666666666666666


Q ss_pred             hhc
Q 036950          367 ELD  369 (469)
Q Consensus       367 ~~d  369 (469)
                      +.|
T Consensus       242 eQn  244 (389)
T COG2956         242 EQN  244 (389)
T ss_pred             HhC
Confidence            655

>smart00028 TPR Tetratricopeptide repeats

Probab=87.46  E-value=0.79  Score=26.70  Aligned_cols=29  Identities=31%  Similarity=0.446  Sum_probs=25.3

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIG  321 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~  321 (469)
                      +...|..++..++|..|+..|+++++..+
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            45789999999999999999999998644

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=87.31  E-value=9.3  Score=39.33  Aligned_cols=31  Identities=19%  Similarity=0.155  Sum_probs=27.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSS  325 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~  325 (469)
                      +.|+.+++.|++++|++.-++.+.-.+.++.
T Consensus       379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~  409 (484)
T COG4783         379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPN  409 (484)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence            6899999999999999999999987777643

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.03  E-value=1  Score=27.36  Aligned_cols=30  Identities=13%  Similarity=0.262  Sum_probs=26.4

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGY  322 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~  322 (469)
                      +...|..+++.|++++|+..|++.+...|.
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            457899999999999999999999987764

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.31  E-value=3.4  Score=31.35  Aligned_cols=35  Identities=23%  Similarity=0.044  Sum_probs=30.0

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY  322 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~  322 (469)
                      +.|..+-.+|+..=..|+|++|+..|..|++++-.
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            45667777788888999999999999999999865

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.30  E-value=0.89  Score=44.51  Aligned_cols=80  Identities=15%  Similarity=0.061  Sum_probs=59.1

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      |.-+..+++.+.+.++...|++-|..|+.+-++.               ..-|--+..++.-+++|.+|-++...|+++|
T Consensus       148 a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds---------------a~~ykfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  148 AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS---------------AKGYKFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             hhhcccccceeeeccCCchhhhhhhhhhccCccc---------------ccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            3344577899999999999999999999876644               3344556666777999999999999999999


Q ss_pred             -HHHHHHH-HhhCCCCC
Q 036950          370 -KLDIKKA-LEIDPDNS  384 (469)
Q Consensus       370 -~~~~~~a-l~l~p~~~  384 (469)
                       -++.... .+..|+-.
T Consensus       213 ~dE~~~a~lKeV~p~a~  229 (377)
T KOG1308|consen  213 YDEANSATLKEVFPNAG  229 (377)
T ss_pred             ccHHHHHHHHHhccchh
Confidence             2233332 33456655

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.27  E-value=11  Score=28.76  Aligned_cols=58  Identities=17%  Similarity=0.129  Sum_probs=42.6

Q ss_pred             hHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          341 CNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQ  411 (469)
Q Consensus       341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~  411 (469)
                      -+...|.-.=+.|+|.+|+.++.++|    +.|..+++.+|+..         ....++.+..++..+...
T Consensus         8 ~l~~~Ave~D~~g~y~eAl~~Y~~ai----e~l~~~lk~e~d~~---------~k~~~r~ki~eY~~RAE~   65 (77)
T cd02683           8 EVLKRAVELDQEGRFQEALVCYQEGI----DLLMQVLKGTKDEA---------KKKNLRQKISEYMDRAEA   65 (77)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHH----HHHHHHHhhCCCHH---------HHHHHHHHHHHHHHHHHH
Confidence            34555666777899999999999999    57889999998766         344556666666555543

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=86.05  E-value=3.8  Score=42.33  Aligned_cols=58  Identities=17%  Similarity=0.198  Sum_probs=47.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK  364 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~  364 (469)
                      +..+..+.+.|+.++|++.|...++..+....             ..++.|+..|++.++.|.++-....+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------------l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------------LNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------------hhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            46889999999999999999999987764322             45889999999999998887655544

The molecular function of this protein is uncertain.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.81  E-value=3.7  Score=40.55  Aligned_cols=58  Identities=22%  Similarity=0.322  Sum_probs=39.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          298 NVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       298 n~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .++..+.+|..|+....-.+.       .++||.       ..+.+=+|.||+++|+|++|+..+..+.+-+
T Consensus        30 edfls~rDytGAislLefk~~-------~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~   87 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLN-------LDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD   87 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhc-------cchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccC
Confidence            455666677777666555442       222332       2233446999999999999999999988766

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=84.87  E-value=6.8  Score=29.61  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=30.4

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY  322 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~  322 (469)
                      +..|..+..+|..+=+.|+|++|+.+|..|+..+..
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~   40 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE   40 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            456677777888888899999999999999998854

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.64  E-value=17  Score=34.53  Aligned_cols=73  Identities=14%  Similarity=0.172  Sum_probs=56.9

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh---CHHHHHHHHHHHH
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK---EYKQAEKLCSKVL  366 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~---~~~~ai~~~~~al  366 (469)
                      .+.+.+.++-|+..|+|.+|.-||++.+-.-|..               ..++.-+|-.++-+|   ++..|..++.++|
T Consensus       154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n---------------~l~f~rlae~~Yt~gg~eN~~~arkyy~~al  218 (289)
T KOG3060|consen  154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN---------------PLYFQRLAEVLYTQGGAENLELARKYYERAL  218 (289)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4456788999999999999999999999876654               556666677666665   7899999999999


Q ss_pred             hhcHHHHHHHH
Q 036950          367 ELDKLDIKKAL  377 (469)
Q Consensus       367 ~~d~~~~~~al  377 (469)
                      ++..++++..+
T Consensus       219 kl~~~~~ral~  229 (289)
T KOG3060|consen  219 KLNPKNLRALF  229 (289)
T ss_pred             HhChHhHHHHH
Confidence            99955444443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.59  E-value=14  Score=34.85  Aligned_cols=116  Identities=14%  Similarity=0.151  Sum_probs=66.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      .+++-.....-+-++|+..|++++.++..+..         ..+...++.-.+..+.+++.|.+|-....+-..+.    
T Consensus       114 leKAak~lenv~Pd~AlqlYqralavve~~dr---------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~  184 (308)
T KOG1585|consen  114 LEKAAKALENVKPDDALQLYQRALAVVEEDDR---------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD  184 (308)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh
Confidence            45666677888899999999999998865421         22223344444555556665555544333322111    


Q ss_pred             ------------------HHHHHHHHhhCCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 036950          370 ------------------KLDIKKALEIDPDNS-LEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAK  419 (469)
Q Consensus       370 ------------------~~~~~~al~l~p~~~-~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~  419 (469)
                                        .+|+..+-+.-.... . +.-.-...-..+++.+..+++.+...+++|...
T Consensus       185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi-p~f~~sed~r~lenLL~ayd~gD~E~~~kvl~s  252 (308)
T KOG1585|consen  185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI-PAFLKSEDSRSLENLLTAYDEGDIEEIKKVLSS  252 (308)
T ss_pred             hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC-ccccChHHHHHHHHHHHHhccCCHHHHHHHHcC
Confidence                              456666554422100 0 000122455667777888888777777777664

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=84.37  E-value=2.1  Score=41.83  Aligned_cols=88  Identities=19%  Similarity=0.306  Sum_probs=68.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---H
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---K  370 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---~  370 (469)
                      -+++-..+--|+|..|+.-.++|+.+-+..               .++|.-=|.|++.|++|.+|+..|+..|++|   .
T Consensus       123 ~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h---------------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  123 TNRAAAQLYLGNYRSALNDCSAALKLKPTH---------------LKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCcch---------------hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            356666666799999999999999987643               7788888999999999999999999999998   3


Q ss_pred             HHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 036950          371 LDIKKALEIDPDNSLEAGWGVRMEYKLLKEK  401 (469)
Q Consensus       371 ~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~  401 (469)
                      ..++-+-.++|++.     .+..+...++++
T Consensus       188 ~~~~l~~l~~k~~~-----~~L~~er~~rK~  213 (390)
T KOG0551|consen  188 KAIELRNLIHKNDK-----LKLIEERDVRKK  213 (390)
T ss_pred             HHHHHHhhcCcchH-----HHHHHHHHHHHH
Confidence            44444444789988     555554444443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=84.09  E-value=3.9  Score=41.82  Aligned_cols=59  Identities=20%  Similarity=0.156  Sum_probs=49.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      ...|.-+.+.++|.+|...|++++..-|.                ...|.-+|.++.++|+.++|.+++.++|.+
T Consensus       332 l~lgrl~~~~~~~~~A~~~le~al~~~P~----------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        332 STLGQLLMKHGEWQEASLAFRAALKQRPD----------------AYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            35799999999999999999999987654                233567899999999999999999988854

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.08  E-value=11  Score=29.02  Aligned_cols=65  Identities=17%  Similarity=0.102  Sum_probs=48.4

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHhHhHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD------SSFSDEEKQQAKVLKITCNLNNAACKLKL  352 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~------~~~~~e~~~~~~~l~~~~~~N~a~~~~kl  352 (469)
                      +.|-..-+.|-.+=..|+.++|+..|++|++.+..-      .....++++.+..+..+.-.|+..+--++
T Consensus         6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL   76 (79)
T cd02679           6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL   76 (79)
T ss_pred             HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555566666666799999999999999988532      13345788888888888888888776554

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=83.67  E-value=5  Score=40.82  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=29.6

Q ss_pred             HHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          335 KVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       335 ~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      -.-.+++++..+-||+-+++|.+|++.++.+|-.
T Consensus       160 ~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  160 PACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             cchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445778999999999999999999999999854

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=83.07  E-value=1.4  Score=45.16  Aligned_cols=60  Identities=18%  Similarity=0.140  Sum_probs=54.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +++-+++|.++|..|+.-..+||+..+.               ++++|.-+|.+++++++|.+|+.+++++..+.
T Consensus        43 nRa~a~lK~e~~~~Al~Da~kaie~dP~---------------~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~  102 (476)
T KOG0376|consen   43 NRALAHLKVESFGGALHDALKAIELDPT---------------YIKAYVRRGTAVMALGEFKKALLDLEKVKKLA  102 (476)
T ss_pred             hhhhhheeechhhhHHHHHHhhhhcCch---------------hhheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence            5668889999999999999999997654               38899999999999999999999999999887

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.76  E-value=2.5  Score=27.51  Aligned_cols=29  Identities=21%  Similarity=0.147  Sum_probs=24.1

Q ss_pred             hHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          341 CNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +|.-+|-+.+-.++|..|+.++.++|++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            56667888888889999999999999753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=82.75  E-value=9.5  Score=41.37  Aligned_cols=69  Identities=26%  Similarity=0.237  Sum_probs=55.7

Q ss_pred             HhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHH--HHHHHHhhc---------
Q 036950          301 FKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEK--LCSKVLELD---------  369 (469)
Q Consensus       301 fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~--~~~~al~~d---------  369 (469)
                      -.+|++.+|...|..|+.+.|..               ..+..-+|.|+++.|+-.-|.+  ....++++|         
T Consensus       695 ~~~~~~~EA~~af~~Al~ldP~h---------------v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~  759 (799)
T KOG4162|consen  695 EVKGQLEEAKEAFLVALALDPDH---------------VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY  759 (799)
T ss_pred             HHHHhhHHHHHHHHHHHhcCCCC---------------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence            35577889999999999887765               4556778999999999888888  899999999         


Q ss_pred             --------------HHHHHHHHhhCCCCC
Q 036950          370 --------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 --------------~~~~~~al~l~p~~~  384 (469)
                                    -++|..|+++++.+.
T Consensus       760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  760 LGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence                          456777777777765

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.60  E-value=12  Score=33.94  Aligned_cols=65  Identities=22%  Similarity=0.155  Sum_probs=51.3

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      ...+.+..++-.++++.|....+.++..-.+            ..+...+-.++|..++.++++++|+...+..-.-
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~  155 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIKEE  155 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence            3457888999999999999999999864221            3455667789999999999999999887765544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=82.30  E-value=6.7  Score=28.81  Aligned_cols=55  Identities=16%  Similarity=0.297  Sum_probs=40.3

Q ss_pred             HHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036950          346 AACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIF  417 (469)
Q Consensus       346 a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf  417 (469)
                      +..|++.++|+.|+.+++.++           .++|++.     .+...+..+........+.... +.+..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l-----------~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~-l~~~l   56 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERAL-----------ELDPDDP-----ELWLQRARCLFQLGRYEEALED-LERAL   56 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHH-----------HhCcccc-----hhhHHHHHHHHHhccHHHHHHH-HHHHH
Confidence            567899999999998888776           7788888     7777777777776655554432 44444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=82.25  E-value=15  Score=39.46  Aligned_cols=104  Identities=11%  Similarity=0.025  Sum_probs=70.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc--------
Q 036950          298 NVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--------  369 (469)
Q Consensus       298 n~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--------  369 (469)
                      +-..-.++.++|++...+||+.++.+               .++|+=+++.+-.+++.+.|...|..-++..        
T Consensus       659 ~~er~ld~~eeA~rllEe~lk~fp~f---------------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl  723 (913)
T KOG0495|consen  659 NLERYLDNVEEALRLLEEALKSFPDF---------------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL  723 (913)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCCch---------------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH
Confidence            33334556666777777777666654               7788899999999999999999998888776        


Q ss_pred             ---------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 036950          370 ---------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINK  422 (469)
Q Consensus       370 ---------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~  422 (469)
                                     +..|.++...+|.|.     ...-+..+++.+..-....+ .++.+.++....
T Consensus       724 lLakleEk~~~~~rAR~ildrarlkNPk~~-----~lwle~Ir~ElR~gn~~~a~-~lmakALQecp~  785 (913)
T KOG0495|consen  724 LLAKLEEKDGQLVRARSILDRARLKNPKNA-----LLWLESIRMELRAGNKEQAE-LLMAKALQECPS  785 (913)
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHhcCCCcc-----hhHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCc
Confidence                           557888999999998     66555555444433222222 234555555443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=82.08  E-value=15  Score=31.46  Aligned_cols=73  Identities=19%  Similarity=0.145  Sum_probs=57.3

Q ss_pred             HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950          285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK  364 (469)
Q Consensus       285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~  364 (469)
                      .+.+.+....+.....+..+++..+...+...+.-.+..            .......+.+|.+++..|+|++|+..++.
T Consensus         6 ~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s------------~ya~~A~l~lA~~~~~~g~~~~A~~~l~~   73 (145)
T PF09976_consen    6 QQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSS------------PYAALAALQLAKAAYEQGDYDEAKAALEK   73 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            345667777788888888999999888888888765532            13355678899999999999999999999


Q ss_pred             HHhhc
Q 036950          365 VLELD  369 (469)
Q Consensus       365 al~~d  369 (469)
                      ++...
T Consensus        74 ~~~~~   78 (145)
T PF09976_consen   74 ALANA   78 (145)
T ss_pred             HHhhC
Confidence            88643

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=82.07  E-value=3  Score=30.27  Aligned_cols=45  Identities=29%  Similarity=0.412  Sum_probs=34.4

Q ss_pred             HHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950          349 KLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD  409 (469)
Q Consensus       349 ~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e  409 (469)
                      +++.|+|++|+..+++++           ..+|+|.     +++-.+..+.-+..+..+..
T Consensus         1 ll~~~~~~~A~~~~~~~l-----------~~~p~~~-----~~~~~la~~~~~~g~~~~A~   45 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKAL-----------QRNPDNP-----EARLLLAQCYLKQGQYDEAE   45 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHH-----------HHTTTSH-----HHHHHHHHHHHHTT-HHHHH
T ss_pred             ChhccCHHHHHHHHHHHH-----------HHCCCCH-----HHHHHHHHHHHHcCCHHHHH
Confidence            367889999988776665           7899998     88888888877776666555

...

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=81.96  E-value=16  Score=27.56  Aligned_cols=55  Identities=18%  Similarity=0.303  Sum_probs=37.6

Q ss_pred             hHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 036950          343 LNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDV  410 (469)
Q Consensus       343 ~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~  410 (469)
                      ...|..+=+.|+|++|+.++..++    +.|..+++.+|+..         ....++.+..++..+-.
T Consensus        12 i~~Av~~d~~g~~~eAl~~Y~~a~----e~l~~~~~~~~~~~---------~~~~~~~k~~eyl~raE   66 (77)
T smart00745       12 ISKALKADEAGDYEEALELYKKAI----EYLLEGIKVESDSK---------RREAVKAKAAEYLDRAE   66 (77)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHhccCCCHH---------HHHHHHHHHHHHHHHHH
Confidence            445666667899999999999999    57778888887644         23344455555544443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=81.02  E-value=11  Score=38.47  Aligned_cols=83  Identities=14%  Similarity=0.097  Sum_probs=59.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHH
Q 036950          296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKK  375 (469)
Q Consensus       296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~  375 (469)
                      .+..++..++-.+|++..+++|...+.+               ..++.-.|..+++.++|+.|+..+.+|.         
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d---------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av---------  261 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQD---------------SELLNLQAEFLLSKKKYELALEIAKKAV---------  261 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH---------
Confidence            4555666677778888888888655543               4455666888888888888887777665         


Q ss_pred             HHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950          376 ALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD  409 (469)
Q Consensus       376 al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e  409 (469)
                        .+.|++-     .....|.++-..+.+.+..-
T Consensus       262 --~lsP~~f-----~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  262 --ELSPSEF-----ETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             --HhCchhH-----HHHHHHHHHHHhcCCHHHHH
Confidence              7788888     77778888777766665543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=80.85  E-value=17  Score=35.11  Aligned_cols=89  Identities=20%  Similarity=0.247  Sum_probs=66.0

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH-------
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV-------  365 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a-------  365 (469)
                      ...++..+...+++..|...+..++...+..               ..+..-+|.||+.+|+.+.|..-....       
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---------------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~  201 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPEN---------------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK  201 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCccc---------------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhh
Confidence            3467889999999999999999999988754               334456799999999987766554431       


Q ss_pred             --------Hhhc--------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 036950          366 --------LELD--------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEK  401 (469)
Q Consensus       366 --------l~~d--------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~  401 (469)
                              |++-        ..++++.+..||+|.     +++-.+......
T Consensus       202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~-----~aa~~lA~~~~~  248 (304)
T COG3118         202 AAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDV-----EAALALADQLHL  248 (304)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCH-----HHHHHHHHHHHH
Confidence                    1111        678999999999998     766665555443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=80.75  E-value=6.9  Score=41.21  Aligned_cols=82  Identities=17%  Similarity=0.128  Sum_probs=60.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----------
Q 036950          300 LFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----------  369 (469)
Q Consensus       300 ~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----------  369 (469)
                      +...|+-..|+.+..+|+..-+.-..              .-..|+|...++-+-..+|-....++|.+.          
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~~~~--------------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~  682 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPLQQD--------------VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSL  682 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChhhhc--------------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhc
Confidence            33567778888888888875543211              124677777888777777877788877776          


Q ss_pred             -------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 036950          370 -------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKE  400 (469)
Q Consensus       370 -------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~  400 (469)
                                   ++.|+.|++++|++.     .+..-|..+.=
T Consensus       683 g~~~l~l~~i~~a~~~~~~a~~~~~~~~-----~~~~~l~~i~c  721 (886)
T KOG4507|consen  683 GNAYLALKNISGALEAFRQALKLTTKCP-----ECENSLKLIRC  721 (886)
T ss_pred             chhHHHHhhhHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHH
Confidence                         678999999999999     88887777654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.39  E-value=2.2  Score=24.94  Aligned_cols=23  Identities=26%  Similarity=0.225  Sum_probs=20.6

Q ss_pred             hHhHHHHHHHHhhCHHHHHHHHH
Q 036950          341 CNLNNAACKLKLKEYKQAEKLCS  363 (469)
Q Consensus       341 ~~~N~a~~~~kl~~~~~ai~~~~  363 (469)
                      +++|+|..+..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            57899999999999999998765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	469
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-110
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-106
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		3e-26
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		3e-37
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		3e-36
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		5e-32
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		2e-30
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		7e-23
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		3e-18
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		2e-16
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		3e-11
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		3e-11
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		3e-11
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		3e-11
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		3e-10
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		1e-09
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		7e-10
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		1e-09
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		8e-10
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		1e-09
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		9e-09
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		2e-08
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		3e-08
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		5e-06
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		3e-04
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		1e-07
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		4e-07
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		9e-07
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		1e-06
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		2e-06
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		2e-06
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		2e-06
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		5e-06
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		5e-06
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		5e-06
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		5e-06
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		5e-06
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		6e-06
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		6e-06
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		7e-06
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		8e-06
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		5e-05
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		9e-06
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		9e-06
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		9e-06
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		1e-05
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		2e-05
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		1e-05
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		2e-04
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-05
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-05
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-05
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-05
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-05
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-05
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-05
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		2e-05
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		3e-05
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		4e-05
1q6h_A	224	Crystal Structure Of A Truncated Form Of Fkpa From		3e-05
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		4e-05
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		5e-05
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		4e-05
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		6e-05
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		4e-05
1q6u_A	245	Crystal Structure Of Fkpa From Escherichia Coli Len		5e-05
2jwx_A	157	Solution Structure Of The N-Terminal Domain Of Huma		8e-05
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		8e-05
2f2d_A	121	Solution Structure Of The Fk506-Binding Domain Of H		1e-04
2awg_A	118	Structure Of The Ppiase Domain Of The Human Fk506-B		1e-04
1jvw_A	167	Trypanosoma Cruzi Macrophage Infectivity Potentiato		4e-04
2d9f_A	135	Solution Structure Of Ruh-047, An Fkbp Domain From		5e-04
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		6e-04

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score =  393 bits (1010), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/286 (71%), Positives = 226/286 (79%), Gaps = 7/286 (2%)
Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENA+FTIPPELAYGESGSPPTIP NA LQFDVELL WTSV+DI KDGGIFKKIL E
Sbjct: 93  MKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKE 152
Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G KWENPKD DEVFVKYE RLEDGT++SKS+GVEFTV DG+ C ALAKAVKTMKKGEKVL
Sbjct: 153 GDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVL 212
Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXXXXXXXXXXXXXXEGDG 180
           L VKPQY FG+ GRPA G+  AVP NA+L I LE+VSWKTV+              E +G
Sbjct: 213 LAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG 272
Query: 181 YE--NQMMVQWF----KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
           YE  N+  V       KL DGTVF+KKGHDE+  FEFK DEE VI+GLDRAV  MKKGEV
Sbjct: 273 YERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEV 332
Query: 235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWD 280
           ALVTI PEYA+GS  S K+ AIVP NST+ YEVELVSF+K+KESWD
Sbjct: 333 ALVTIPPEYAYGSTES-KQDAIVPPNSTVIYEVELVSFVKDKESWD 377

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/281 (71%), Positives = 221/281 (78%), Gaps = 7/281 (2%)
Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENA+FTIPPELAYGESGSPPTIP NA LQFDVELL WTSV+DI KDGGIFKKIL E
Sbjct: 77  MKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKE 136
Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G KWENPKD DEVFVKYE RLEDGT++SKS+GVEFTV DG+ C ALAKAVKTMKKGEKVL
Sbjct: 137 GDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVL 196
Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXXXXXXXXXXXXXXEGDG 180
           L VKPQY FG+ GRPA G+  AVP NA+L I LE+VSWKTV+              E +G
Sbjct: 197 LAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG 256
Query: 181 YE--NQMMVQWF----KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
           YE  N+  V       KL DGTVF+KKGHDE+  FEFK DEE VI+GLDRAV  MKKGEV
Sbjct: 257 YERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEV 316
Query: 235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKE 275
           ALVTI PEYA+GS  S K+ AIVP NST+ YEVELVSF+K+
Sbjct: 317 ALVTIPPEYAYGSTES-KQDAIVPPNSTVIYEVELVSFVKD 356

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 64  WENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKV 119
           W+ P+  DEV V Y   L DG     S    D  +F +G G       + +KTMKKGE  
Sbjct: 24  WDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENA 83
Query: 120 LLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXXXXXXXXXXXXXXEGD 179
           L T+ P+ A+G++G P T     +P+NA L   +E++SW +V               EGD
Sbjct: 84  LFTIPPELAYGESGSPPT-----IPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGD 138
Query: 180 GYEN-----QMMVQW-FKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGE 233
            +EN     ++ V++  +L DGTV  K         EF + +  +   L +AVKTMKKGE
Sbjct: 139 KWENPKDPDEVFVKYEARLEDGTVVSKSEG-----VEFTVKDGHLCPALAKAVKTMKKGE 193
Query: 234 VALVTIEPEYAFGSCS--SEKELAIVPANSTLFYEVELVSF 272
             L+ ++P+Y FG     +  E   VP N++L  ++ELVS+
Sbjct: 194 KVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSW 234

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  152 bits (385), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/423 (29%), Positives = 194/423 (45%), Gaps = 55/423 (13%)
Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVE----FTVGDGYFCA 104
           KD G+ K +   G   E P   D V+V Y  +L +G     S        F++G G    
Sbjct: 29  KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIK 88
Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXX 164
           A    V TMKKGE   L  KP+YA+G     ATG    +PSNA L   +E++ +K     
Sbjct: 89  AWDIGVATMKKGEICHLLCKPEYAYG-----ATGSLPKIPSNATLFFEVELLDFKG-EDL 142
Query: 165 XXXXXXXXXXXXEGDGYENQMMVQWFKLH-----DGTVFVKKGHDEEPLFEFKIDEEQVI 219
                        G+GY N       ++H      G VF  +         F + E +  
Sbjct: 143 LEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRD------VAFTVGEGEDH 196
Query: 220 D---GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEK 276
           D   G+D+A++ M++ E  ++ + P Y FG     K   I P N+ L YEV L SF K K
Sbjct: 197 DIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPK-FGIEP-NAELIYEVTLKSFEKAK 254
Query: 277 ESWDMNTQXXXXXXXXXXXXXNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKV 336
           ESW+M+T+              V FK GKY +A  +Y + V+++  +   S++E + ++ 
Sbjct: 255 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASES 314
Query: 337 LKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDI 373
             +   LN A C LKL+EY +A + C K L LD                       K D 
Sbjct: 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374
Query: 374 KKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSAS-SM 432
           +K LE++P N        R++  + ++K +E+N++D + Y N+F K  + +  + A+ +M
Sbjct: 375 EKVLEVNPQNK-----AARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQDAKEEANKAM 429
Query: 433 AKQ 435
           +K+
Sbjct: 430 SKK 432

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 185/401 (46%), Gaps = 42/401 (10%)
Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVE----FTVGDGYFCA 104
           KD G+ K +   G   E P   D+V+V Y+ +L +G     S        F++G G    
Sbjct: 29  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 88
Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXX 164
           A    V TMK+GE   L  KP+YA+G     + G    +PSNA L   +E++ +K     
Sbjct: 89  AWDIGVATMKRGEICHLLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDL 142
Query: 165 XXXXXXXXXXXXEGDGYENQMMVQWFKLH-DGTVFVKKGHDEEPLFEFKIDEEQVID-GL 222
                       +G+GY N       ++H +G    +     +  F     E+  I  G+
Sbjct: 143 FEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGEDHDIPIGI 202
Query: 223 DRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMN 282
           D+A++ M++ E  ++ + P Y FG     K   I P N+ L YEV L SF K KESW+M+
Sbjct: 203 DKALEKMQREEQCILYLGPRYGFGEAGKPK-FGIEP-NAELIYEVTLKSFEKAKESWEMD 260
Query: 283 TQXXXXXXXXXXXXXNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCN 342
           T+              V FK GKY +A  +Y + V+++  +   S++E + ++   +   
Sbjct: 261 TKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320
Query: 343 LNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEI 379
           LN A C LKL+EY +A + C K L LD                       K D +K LE+
Sbjct: 321 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380
Query: 380 DPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKI 420
           +P N        R++  + ++K +E+N++D + Y N+F K 
Sbjct: 381 NPQNK-----AARLQISMCQKKAKEHNERDRRIYANMFKKF 416

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 138/255 (54%), Gaps = 33/255 (12%)
Query: 209 FEFKIDEEQVID---GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFY 265
             F+I E + +D   GL+RA++ M+KGE ++V ++P YAFGS   EK    +P N+ L Y
Sbjct: 65  LRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKY 122
Query: 266 EVELVSFIKEKESWDMNTQXXXXXXXXXXXXXNVLFKAGKYERASKRYEQAVNYIGYDSS 325
           E+ L SF K KESW+MN++              V FK GKY++A  +Y++ V+++ Y+SS
Sbjct: 123 ELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 326 FSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---------------- 369
           FS+EE Q+A+ L++  +LN A C LKL+ +  A + C+K LELD                
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLA 242
Query: 370 -------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINK 422
                  + D +K L++ P+N        + +  + ++++R    ++ + Y N+F ++ +
Sbjct: 243 VNDFELARADFQKVLQLYPNNK-----AAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 297
Query: 423 LEQAKSASSMAKQEP 437
            E    A + +   P
Sbjct: 298 EENKAKAEASSGDHP 312

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 143/277 (51%), Gaps = 33/277 (11%)
Query: 209 FEFKIDEEQVID---GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFY 265
             F+I E + +D   GL+RA++  +KGE ++V ++P YAFGS   EK    +P N+ L Y
Sbjct: 65  LRFEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKY 122
Query: 266 EVELVSFIKEKESWDMNTQXXXXXXXXXXXXXNVLFKAGKYERASKRYEQAVNYIGYDSS 325
           E+ L SF K KESW+ N++              V FK GKY++A  +Y++ V+++ Y+SS
Sbjct: 123 ELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 326 FSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---------------- 369
           FS+EE Q+A+ L++  +LN A C LKL+ +  A + C+K LELD                
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA 242
Query: 370 -------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINK 422
                  + D +K L++ P+N        + +  + ++++R    ++ + Y N+F ++ +
Sbjct: 243 VNDFELARADFQKVLQLYPNNK-----AAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 297
Query: 423 LEQAKSASSMAKQEPAPMVLIARHDTSIKLSMIAIES 459
            E    A + +   P    +     ++   S   +E+
Sbjct: 298 EENKAKAEASSGDHPTDTEMKEEQKSNTAGSQSQVET 334

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 121/247 (48%), Gaps = 30/247 (12%)
Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGT----LISKSDGVEFTVGDGYFCA 104
           +D G+ K I  EG   E P   D VFV Y   L DGT     + + D   F +G G    
Sbjct: 49  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 108
Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXX 164
           A   A+ TMK GE   +T KP+YA+G  G P       +P NA L   +E+  +K     
Sbjct: 109 AWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-----IPPNATLVFEVELFEFKGEDLT 163
Query: 165 XXXXXXXXXX-XXEGDGYENQMMVQWFKLHDGTVF--VKKGHDEEPLFE-----FKIDEE 216
                         G+GY         K ++G +     +G+ ++ LF+     F+I E 
Sbjct: 164 EEEDGGIIRRIQTRGEGYA--------KPNEGAIVEVALEGYYKDKLFDQRELRFEIGEG 215
Query: 217 QVID---GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI 273
           + +D   GL+RA++ M+KGE ++V ++P YAFGS   EK    +P N+ L YE+ L SF 
Sbjct: 216 ENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFE 273
Query: 274 KEKESWD 280
           K KESW+
Sbjct: 274 KAKESWE 280

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 111/240 (46%), Gaps = 14/240 (5%)
Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVE----FTVGDGYFCA 104
           KD G+ K +   G   E P   D+V+V Y+ +L +G     S        F++G G    
Sbjct: 33  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 92
Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSXX 164
           A    V TMKKGE   L  KP+YA+G     + G    +PSNA L   +E++ +K     
Sbjct: 93  AWDIGVATMKKGEICHLLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDL 146
Query: 165 XXXXXXXXXXXXEGDGYENQMMVQWFKLH-DGTVFVKKGHDEEPLFEFKIDEEQVID-GL 222
                       +G+GY N       ++H +G    +     +  F     E+  I  G+
Sbjct: 147 FEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGEDHDIPIGI 206
Query: 223 DRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMN 282
           D+A++ M++ E  ++ + P Y FG     K   I P N+ L YEV L SF K KESW+M+
Sbjct: 207 DKALEKMQREEQCILYLGPRYGFGEAGKPK-FGIEP-NAELIYEVTLKSFEKAKESWEMD 264

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 110/243 (45%), Gaps = 34/243 (13%)
Query: 203 HDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANST 262
           H+++P+      E++ + GL   V +MK GE ALV +  E A+G          VP  + 
Sbjct: 90  HEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK-EGNFSFPNVPPMAD 148
Query: 263 LFYEVELVSFIKEKES---WDMNTQXXXXXXXXXXXXXNVLFKAGKYERASKRYEQAVNY 319
           L YEVE++ F + KE     DM  +             N LFK  K E A ++YE A+ Y
Sbjct: 149 LLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAY 208
Query: 320 IGYDSSFSDEEKQQ--AKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL----------- 366
           +G D  F    K Q  A  +K  C+LN AAC +KLK Y +A   C+ VL           
Sbjct: 209 MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALF 268
Query: 367 -------ELDKL-----DIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYG 414
                  EL ++     D +KA +  PD+       +R E + L E+ +   +K  + Y 
Sbjct: 269 RRGKAKAELGQMDSARDDFRKAQKYAPDDK-----AIRRELRALAEQEKALYQKQKEMYK 323
Query: 415 NIF 417
            IF
Sbjct: 324 GIF 326

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 191 KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS 250
           KL +G  F    HD    F F + + QVI   D  V TMKKGE+  +  +PEYA+GS  S
Sbjct: 64  KLSNGKKF-DSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS 122
Query: 251 EKELAIVPANSTLFYEVELVSFIKE 275
              L  +P+N+TLF+E+EL+ F  E
Sbjct: 123 ---LPKIPSNATLFFEIELLDFKGE 144

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 191 KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS 250
           KL +G  F    HD    F F + + QVI   D  V TMKKGE+  +  +PEYA+GS  S
Sbjct: 64  KLSNGKKF-DSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS 122
Query: 251 EKELAIVPANSTLFYEVELVSFIKE 275
              L  +P+N+TLF+E+EL+ F  E
Sbjct: 123 ---LPKIPSNATLFFEIELLDFKGE 144

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 191 KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS 250
           KL +G  F    HD    F F + + QVI   D  V TMKKGE+  +  +PEYA+GS  S
Sbjct: 48  KLSNGKKF-DSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS 106
Query: 251 EKELAIVPANSTLFYEVELVSFIKE 275
              L  +P+N+TLF+E+EL+ F  E
Sbjct: 107 ---LPKIPSNATLFFEIELLDFKGE 128

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 191 KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS 250
           KL +G  F    HD    F F + + QVI   D  V TMKKGE+  +  +PEYA+GS  S
Sbjct: 48  KLSNGKKF-DSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS 106
Query: 251 EKELAIVPANSTLFYEVELVSFIKE 275
              L  +P+N+TLF+E+EL+ F  E
Sbjct: 107 ---LPKIPSNATLFFEIELLDFKGE 128

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGT----LISKSDGVEFTVGDGYFCA 104
           +D G+ K I  EG   E P   D VFV Y   L DGT     + + D   F +G G    
Sbjct: 28  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 87
Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
           A   AV TMK GE   +T KP+YA+G  G P       +P NA L   +E+  +K
Sbjct: 88  AWDIAVATMKVGELCRITCKPEYAYGSAGSPP-----KIPPNATLVFEVELFEFK 137

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 177 EGDGYENQMMVQWFKLH------DGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMK 230
           EG G E  M+     +H      DGT F     D +  F F + + +VI   D AV TMK
Sbjct: 39  EGTGTETPMIGDRVFVHYTGWLLDGTKF-DSSLDRKDKFSFDLGKGEVIKAWDIAVATMK 97
Query: 231 KGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
            GE+  +T +PEYA+GS  S  +   +P N+TL +EVEL  F
Sbjct: 98  VGELCRITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEF 136

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGT----LISKSDGVEFTVGDGYFCA 104
           +D G+ K I  EG   E P   D VFV Y   L DGT     + + D   F +G G    
Sbjct: 29  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88
Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
           A   A+ TMK GE   +T KP+YA+G  G P       +P NA L   +E+  +K
Sbjct: 89  AWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-----IPPNATLVFEVELFEFK 138

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 177 EGDGYENQMMVQWFKLH------DGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMK 230
           EG G E  M+     +H      DGT F     D +  F F + + +VI   D A+ TMK
Sbjct: 40  EGTGTEMPMIGDRVFVHYTGWLLDGTKF-DSSLDRKDKFSFDLGKGEVIKAWDIAIATMK 98
Query: 231 KGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
            GEV  +T +PEYA+GS  S  +   +P N+TL +EVEL  F
Sbjct: 99  VGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEF 137

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGT----LISKSDGVEFTVGDGYFCA 104
           +D G+ K I  EG   E P   D VFV Y   L DGT     + + D   F +G G    
Sbjct: 33  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 92
Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
           A   A+ TMK GE   +T KP+YA+G  G P       +P NA L   +E+  +K
Sbjct: 93  AWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-----IPPNATLVFEVELFEFK 142

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 177 EGDGYENQMMVQWFKLH------DGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMK 230
           EG G E  M+     +H      DGT F     D +  F F + + +VI   D A+ TMK
Sbjct: 44  EGTGTEMPMIGDRVFVHYTGWLLDGTKF-DSSLDRKDKFSFDLGKGEVIKAWDIAIATMK 102
Query: 231 KGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKE 275
            GEV  +T +PEYA+GS  S  +   +P N+TL +EVEL  F  E
Sbjct: 103 VGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 144

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Query: 192 LHDGTVF-------VKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYA 244
           L DGTVF        KK  + +PL  FK+   +VI G D A+ TM KGE A + IEPE+A
Sbjct: 31  LQDGTVFDTNIQTSAKKKKNAKPL-SFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWA 89
Query: 245 FGSCSSEKELAIVPANSTLFYEVELVSF 272
           +G        A +P N+ L +EVELV  
Sbjct: 90  YGKKGQPD--AKIPPNAKLTFEVELVDI 115

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Query: 192 LHDGTVF-------VKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYA 244
           L DGTVF        KK  + +PL  FK+   +VI G D A+ TM KGE A + IEPE+A
Sbjct: 34  LPDGTVFDTNIQTSSKKKKNAKPL-SFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWA 92
Query: 245 FGSCSSEKELAIVPANSTLFYEVELVSF 272
           +G        A +P N+ L +EVELV  
Sbjct: 93  YGKKGQPD--AKIPPNTKLIFEVELVDI 118

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 29/40 (72%)
Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLG 40
           M  GE A+FTIP +LAYGE G PP IPP A L F+VELL 
Sbjct: 90  MTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 55  KKILVEGKKWENPKDLDEVFVKYEVRLEDGTLI--SKSDG--VEFTVGDGYFCAALAKAV 110
           KK+L  G     P+   +V V Y+ R  DG     S+S G   +FT+G G       + V
Sbjct: 28  KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGV 87
Query: 111 KTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVS 157
            TM  GEK L T+  Q A+G+ G P       +P  A L   +E+++
Sbjct: 88  ATMTLGEKALFTIPYQLAYGERGYPPV-----IPPKATLVFEVELLA 129

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 191 KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS 250
           +  DG  F       +P F+F +   +VI G D+ V TM  GE AL TI  + A+G    
Sbjct: 53  RFPDGKQFDSSRSRGKP-FQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYG---E 108
Query: 251 EKELAIVPANSTLFYEVELVS 271
                ++P  +TL +EVEL++
Sbjct: 109 RGYPPVIPPKATLVFEVELLA 129

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L +GT F     D    F F +    VI G D  V TM KGEVA  TI  +Y +G   S 
Sbjct: 44  LENGTKF-DSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSP 102
Query: 252 KELAIVPANSTLFYEVELVSFIKEKESWDMN 282
            +   +P  +TL +EVEL  +  E  S D +
Sbjct: 103 PK---IPGGATLIFEVELFEWSAEDISPDRD 130

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 29/145 (20%)
Query: 298 NVLFKAGKYERASKRYEQAVNYI-GYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYK 356
           N  FK+  +E A K+Y + + Y+ G  ++  D +  + + + ++C LN  ACKLK+ +++
Sbjct: 231 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQ 290
Query: 357 QAEKLCSKVLELDK-----------------------LDIKKALEIDPDNSLEAGWGVRM 393
            A   C + LE+D                         D+KKA EI P++       ++ 
Sbjct: 291 GAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK-----AIQA 345
Query: 394 EYKLLKEKVREYNKKDVQFYGNIFA 418
           E   +K+K++    K+   Y  +FA
Sbjct: 346 ELLKVKQKIKAQKDKEKAAYAKMFA 370

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F     D    F+F + +++VI GL+  V  M  G+ A +TI P+YA+G+    
Sbjct: 30  LEDGKKF-DSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLTISPDYAYGATGHP 88
Query: 252 KELAIVPANSTLFYEVELVSF 272
               I+P ++TL ++VEL+  
Sbjct: 89  ---GIIPPHATLVFDVELLKL 106

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F     D    F+F + +++VI G +  V  M  G+ A +TI P+YA+G+    
Sbjct: 30  LEDGKKF-DSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHP 88
Query: 252 KELAIVPANSTLFYEVELV 270
               I+P N+TL ++VEL+
Sbjct: 89  ---GIIPPNATLIFDVELL 104

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 209 FEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFG--SCSSEKELAIVPANSTLFYE 266
           F+F +++ +VI G D  V +M+K E  LV IE  Y +G   C        +P NS L +E
Sbjct: 65  FKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES-----IPGNSVLLFE 119
Query: 267 VELVSF 272
           +EL+SF
Sbjct: 120 IELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 209 FEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFG--SCSSEKELAIVPANSTLFYE 266
           F+F +++ +VI G D  V +M+K E  LV IE  Y +G   C        +P NS L +E
Sbjct: 65  FKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES-----IPGNSVLLFE 119
Query: 267 VELVSF 272
           +EL+SF
Sbjct: 120 IELLSF 125

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F     D    F+F + +++VI G +  V  M  G+ A +TI P+YA+G+    
Sbjct: 30  LEDGKKF-DSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLTISPDYAYGATGHP 88
Query: 252 KELAIVPANSTLFYEVELVSF 272
               I+P ++TL ++VEL+  
Sbjct: 89  ---GIIPPHATLVFDVELLKL 106

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F     D    F+F + +++VI G +  V  M  G+ A +TI P+YA+G+    
Sbjct: 30  LEDGKKF-DSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHP 88
Query: 252 KELAIVPANSTLFYEVELVSF 272
               I+P ++TL ++VEL+  
Sbjct: 89  ---GIIPPHATLVFDVELLKL 106

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F     D    F+F + +++VI G +  V  M  G+ A +TI P+YA+G+    
Sbjct: 32  LEDGKKF-DSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHP 90
Query: 252 KELAIVPANSTLFYEVELVSF 272
               I+P ++TL ++VEL+  
Sbjct: 91  ---GIIPPHATLVFDVELLKL 108

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F     D    F+F + +++VI G +  V  M  G+ A +TI P+YA+G+    
Sbjct: 30  LEDGKKF-DSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHP 88
Query: 252 KELAIVPANSTLFYEVELVSF 272
               I+P ++TL ++VEL+  
Sbjct: 89  ---GIIPPHATLVFDVELLKL 106

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F     D    F+F + +++VI G +  V  M  G+ A +TI P+YA+G+    
Sbjct: 30  LEDGKKF-DSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHP 88
Query: 252 KELAIVPANSTLFYEVELVSF 272
               I+P ++TL ++VEL+  
Sbjct: 89  ---GIIPPHATLVFDVELLKL 106

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F       +P FEF +    VI G D  V+ MK G V  +TI P+  +G+  + 
Sbjct: 133 LTDGQKFDSSKDRNDP-FEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG 191
Query: 252 KELAIVPANSTLFYEVELV 270
               ++P N+TL +EVEL+
Sbjct: 192 ---GVIPPNATLVFEVELL 207

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F     D+   F+F + +++VI G +  V  M  G+ A +TI P+YA+G+    
Sbjct: 30  LEDGKKF-DSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGVP 88
Query: 252 KELAIVPANSTLFYEVELV 270
               I+P ++TL ++VEL+
Sbjct: 89  ---GIIPPHATLVFDVELL 104

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F     D    F+F + +++VI G    V  M  G+ A +TI P+YA+G+    
Sbjct: 30  LEDGKKF-DSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLTISPDYAYGATGHP 88
Query: 252 KELAIVPANSTLFYEVELVSF 272
               I+P ++TL ++VEL+  
Sbjct: 89  ---GIIPPHATLVFDVELLKL 106

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG VF       +P F F +   +VI G D  V  M  G+ A +   P+YA+G   S 
Sbjct: 31  LADGKVFDSSRTRGKP-FRFTVGRGEVIRGWDEGVAQMSVGQRAKLVCSPDYAYG---SR 86
Query: 252 KELAIVPANSTLFYEVELV 270
               ++P N+TL ++VEL+
Sbjct: 87  GHPGVIPPNATLTFDVELL 105

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
           M  G+ A  T  P++AYG +G P  IPPNA L FDVELL
Sbjct: 66  MSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELL 104

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L +G  F     D    F+F+I +++VI G +     M  G+ A +T  P+ A+G+    
Sbjct: 30  LQNGKKF-DSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHP 88
Query: 252 KELAIVPANSTLFYEVELVSF 272
               ++P N+TL ++VEL++ 
Sbjct: 89  ---GVIPPNATLIFDVELLNL 106

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 29/158 (18%)
Query: 298 NVLFKAGKYERASKRYEQAVNYIGYDSSFSDE-EKQQAKVLKITCNLNNAACKLKLKEYK 356
           N  FK  +   A  +Y++A+++  +   + D+    + K ++I+CNLN A C  K K+Y 
Sbjct: 46  NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP 105
Query: 357 QAEKLCSKVLELDKLDIK-----------------------KALEIDPDNSLEAGWGVRM 393
           +A    SKVL++DK ++K                       KA  ++P+N       +R 
Sbjct: 106 KAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-----LDIRN 160
Query: 394 EYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASS 431
            Y+L   K++E  KKD   +G +F K    E+ K++++
Sbjct: 161 SYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKNSAN 198

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG   V    D    F+F + +++VI G +  V  M  G+ A +TI P+YA+G+    
Sbjct: 30  LEDGKK-VDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHP 88
Query: 252 KELAIVPANSTLFYEVELVSF 272
               I+P ++TL ++VEL+  
Sbjct: 89  ---GIIPPHATLVFDVELLKL 106

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F     D    F+F + +++VI G    V  M  G+ A +TI P+YA+G+    
Sbjct: 30  LEDGKKF-DSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLTISPDYAYGATGHP 88
Query: 252 KELAIVPANSTLFYEVELVSF 272
               I+P ++TL ++VEL+  
Sbjct: 89  ---GIIPPHATLVFDVELLKL 106

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
           M  G+ A  TI P+ AYG +G P  IPP+A L FDVELL
Sbjct: 66  MSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG   +    D    F+F + +++VI G +  V  M  G+ A +TI P+YA+G+    
Sbjct: 30  LEDGKK-MDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHP 88
Query: 252 KELAIVPANSTLFYEVELVSF 272
               I+P ++TL ++VEL+  
Sbjct: 89  ---GIIPPHATLVFDVELLKL 106

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
           M++GE A F   P  AYG  G PP IPPN  + F++ELL
Sbjct: 92  MRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELL 130

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 212 KIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVS 271
           K+ E+  + G++  + +M++GE+A    +P YA+G+        ++P N+T+ +E+EL+ 
Sbjct: 75  KLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCP---PLIPPNTTVLFEIELLD 131
Query: 272 FI 273
           F+
Sbjct: 132 FL 133

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F       +P F F +    VI G D  V+ MK G V  +TI P+  +G+  + 
Sbjct: 133 LTDGQKFGSSKDRNDP-FAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG 191
Query: 252 KELAIVPANSTLFYEVELV 270
               ++P N+TL +EVEL+
Sbjct: 192 ---GVIPPNATLVFEVELL 207

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
           MK G     TIPP+L YG  G+   IPPNA L F+VELL
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELL 207

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F       +P F F +    VI G D  V+ MK G V  +TI P+  +G+  + 
Sbjct: 133 LTDGQKFDSSKDRNDP-FAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAA 191
Query: 252 KELAIVPANSTLFYEVELV 270
               ++P N+TL +EVEL+
Sbjct: 192 ---GVIPPNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
           MK G     TIPP+L YG  G+   IPPNA L F+VELL
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F       +P F F +    VI G D  V+ MK G V  +TI P+  +G+  + 
Sbjct: 133 LTDGQKFDSSKDRNDP-FAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG 191
Query: 252 KELAIVPANSTLFYEVELV 270
               ++P N+TL +EVEL+
Sbjct: 192 ---GVIPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
           MK G     TIPP+L YG  G+   IPPNA L F+VELL
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F       +P F F +    VI G D  V+ MK G V  +TI P+  +G+  + 
Sbjct: 133 LTDGQKFDSSKDRNDP-FAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG 191
Query: 252 KELAIVPANSTLFYEVELV 270
               ++P N+TL +EVEL+
Sbjct: 192 ---GVIPPNATLVFEVELL 207

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 1  MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
          M +GE     IP EL YGE G+PP IP  A L F+VELL
Sbjct: 56 MCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELL 94

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
           MK G     TIPP+L YG  G+   IPPNA L F+VELL
Sbjct: 93  MKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 131

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F       +P F F +    VI G D  V+ MK G V  +TI P+  +G+  + 
Sbjct: 57  LTDGQKFDSSKDRNDP-FAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG 115
Query: 252 KELAIVPANSTLFYEVELV 270
               ++P N+TL +EVEL+
Sbjct: 116 ---GVIPPNATLVFEVELL 131

>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From Escherichia Coli Length = 224

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 9   FTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
             IPPELAYG++G  P IPPN+ L FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
           MK G     TIPP+L YG  G+   IPPNA L F+VELL
Sbjct: 73  MKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 111

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F       +P F F +    VI G D  V+ MK G V  +TI P+  +G+  + 
Sbjct: 37  LTDGQKFDSSKDRNDP-FAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG 95
Query: 252 KELAIVPANSTLFYEVELV 270
               ++P N+TL +EVEL+
Sbjct: 96  ---GVIPPNATLVFEVELL 111

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
           MK G     TIPP+L YG  G+   IPPNA L F+VELL
Sbjct: 77  MKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 115

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 192 LHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE 251
           L DG  F       +P F F +    VI G D  V+ MK G V  +TI P+  +G+  + 
Sbjct: 41  LTDGQKFDSSKDRNDP-FAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG 99
Query: 252 KELAIVPANSTLFYEVELV 270
               ++P N+TL +EVEL+
Sbjct: 100 ---GVIPPNATLVFEVELL 115

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 23/36 (63%)
Query: 4   GENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
           GE A  TIP   AYG  G P  IPPN+ L FDVELL
Sbjct: 75  GEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli Length = 245

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 9   FTIPPELAYGESGSPPTIPPNAMLQFDVELL 39
             IPPELAYG++G  P IPPN+ L FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221

>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Fkbp38 (Fkbp38ntd) Length = 157

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 46  DICKDGGIFKKILVEGKKWEN-PKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCA 104
           DI  +G + KK LV G    + P     V V  +  LE+GT + +   + FT+GD     
Sbjct: 38  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 97
Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNG 133
           AL  +V  M  GE  ++T   +Y +G  G
Sbjct: 98  ALDLSVPLMDVGETAMVTADSKYCYGPQG 126

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 209 FEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFG--SCSSEKELAIVPANSTLFYE 266
           F+F + + +VI G D  V +M K E   V ++ +Y +G   C        +P NS L +E
Sbjct: 64  FKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGES-----IPGNSVLIFE 118
Query: 267 VELVSF 272
           +EL+SF
Sbjct: 119 IELISF 124

>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human Fkbp38 Length = 121

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 46  DICKDGGIFKKILVEGKKWEN-PKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCA 104
           DI  +G + KK LV G    + P     V V  +  LE+GT + +   + FT+GD     
Sbjct: 6   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 65
Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGR 134
           AL  +V  M  GE  ++T   +Y +G  GR
Sbjct: 66  ALDLSVPLMDVGETAMVTADSKYCYGPQGR 95

>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding Protein 8 Length = 118

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 46  DICKDGGIFKKILVEGKKWEN-PKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCA 104
           DI  +G + KK LV G    + P     V V  +  LE+GT + +   + FT+GD     
Sbjct: 8   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 67
Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGR 134
           AL  +V  M  GE  ++T   +Y +G  GR
Sbjct: 68  ALDLSVPLMDVGETAMVTADSKYCYGPQGR 97

>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator (Tcmip) Length = 167

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 17/83 (20%)
Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           M++G+     IP +LAYG +G    IPP + L+FDVEL+   S+KD              
Sbjct: 101 MREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELI---SIKD-------------- 143
Query: 61  GKKWENPKDLDEVFVKYEVRLED 83
           G K    +++DE+  K E   ED
Sbjct: 144 GGKGRTAEEVDEILRKAEEDRED 166

>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human Cdna Length = 135

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 46  DICKDGGIFKKILVEGKKWEN-PKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCA 104
           DI  +G + KK LV G    + P     V V  +  LE+GT + +   + FT+GD     
Sbjct: 12  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 71
Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNG 133
           AL  +V  M  GE  ++T   +Y +G  G
Sbjct: 72  ALDLSVPLMDVGETAMVTADSKYCYGPQG 100

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 298 NVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQ 357
           N LFK G Y  A   Y QA   +G D++  D+            + N AAC LKL++Y +
Sbjct: 36  NELFKCGDYGGALAAYTQA---LGLDATPQDQA---------VLHRNRAACHLKLEDYDK 83
Query: 358 AEKLCSKVLELDKLDIK 374
           AE   SK +E D  D+K
Sbjct: 84  AETEASKAIEKDGGDVK 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	469
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	1e-101
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	2e-51
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-97
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	6e-27
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	7e-18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	8e-72
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-20
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-62
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-21
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	5e-06
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	2e-50
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	4e-50
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	3e-23
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-43
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-35
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	7e-28
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	3e-27
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	1e-19
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	2e-26
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	3e-26
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	2e-18
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	7e-26
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	6e-23
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	2e-16
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	8e-26
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	7e-24
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-18
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	2e-22
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	8e-21
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	8e-18
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-21
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	2e-19
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	7e-17
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	2e-21
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	4e-19
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	1e-15
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-20
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	1e-20
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	9e-17
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	5e-14
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	2e-20
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	1e-17
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	4e-12
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	4e-20
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-18
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	4e-16
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	4e-20
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	3e-19
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	2e-14
2ppn_A	107	FK506-binding protein 1A; high resolution protein	1e-19
2ppn_A	107	FK506-binding protein 1A; high resolution protein	3e-19
2ppn_A	107	FK506-binding protein 1A; high resolution protein	6e-15
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	3e-19
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	3e-19
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	4e-15
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	1e-18
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	2e-12
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	3e-08
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	2e-18
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	6e-18
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	4e-13
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	7e-17
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	1e-14
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	1e-08
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	8e-16
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	8e-16
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	4e-09
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	3e-15
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-13
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-09
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	3e-15
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	5e-15
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	5e-08
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	8e-14
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	6e-13
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	7e-13
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	7e-13
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	1e-08
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	5e-06
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	2e-12
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	6e-09
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	3e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-12
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-12
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-12
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-11
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-11
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	3e-11
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	2e-08
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	8e-06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-10
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-10
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-10
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	9e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-05
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	7e-08
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	4e-06
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	8e-08
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	4e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-07
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	3e-07
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	5e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-07
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	1e-06
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	4e-06
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	1e-05
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	2e-04
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	2e-05
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	4e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	6e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	9e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	1e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-04

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  305 bits (782), Expect = e-101
 Identities = 208/281 (74%), Positives = 233/281 (82%), Gaps = 7/281 (2%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MKKGENA+FTIPPELAYGESGSPPTIP NA LQFDVELL WTSV+DI KDGGIFKKIL E
Sbjct: 77  MKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKE 136

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
           G KWENPKD DEVFVKYE RLEDGT++SKS+GVEFTV DG+ C ALAKAVKTMKKGEKVL
Sbjct: 137 GDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVL 196

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG 180
           L VKPQY FG+ GRPA G+  AVP NA+L I LE+VSWKTV++I  DKK+LKK+LKE +G
Sbjct: 197 LAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG 256

Query: 181 YE-----NQMMVQWF-KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV 234
           YE       + V+   KL DGTVF+KKGHDE+  FEFK DEE VI+GLDRAV  MKKGEV
Sbjct: 257 YERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEV 316

Query: 235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKE 275
           ALVTI PEYA+GS  S K+ AIVP NST+ YEVELVSF+K+
Sbjct: 317 ALVTIPPEYAYGSTES-KQDAIVPPNSTVIYEVELVSFVKD 356

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  177 bits (450), Expect = 2e-51
 Identities = 98/301 (32%), Positives = 140/301 (46%), Gaps = 41/301 (13%)

Query: 50  DGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAA 105
             G+ KK+L EG+ W+ P+  DEV V Y   L DG     S    D  +F +G G     
Sbjct: 10  KQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKG 69

Query: 106 LAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDIT 165
             + +KTMKKGE  L T+ P+ A+G++G P T     +P+NA L   +E++SW +V DI 
Sbjct: 70  WDQGIKTMKKGENALFTIPPELAYGESGSPPT-----IPANATLQFDVELLSWTSVRDIA 124

Query: 166 KDKKVLKKILKEGDGYENQMMVQWFKLH------DGTVFVKKGHDEEPLFEFKIDEEQVI 219
           KD  + KKILKEGD +EN        +       DGTV       +    EF + +  + 
Sbjct: 125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVV-----SKSEGVEFTVKDGHLC 179

Query: 220 DGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELA--IVPANSTLFYEVELVSFIKEKE 277
             L +AVKTMKKGE  L+ ++P+Y FG            VP N++L  ++ELVS+    E
Sbjct: 180 PALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTE 239

Query: 278 SWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG--------YDSSFSDE 329
             D     K            VL +   YER ++     V   G              ++
Sbjct: 240 IGDDKKILK-----------KVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQ 288

Query: 330 E 330
           E
Sbjct: 289 E 289

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  299 bits (767), Expect = 2e-97
 Identities = 118/428 (27%), Positives = 198/428 (46%), Gaps = 52/428 (12%)

Query: 45  KDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDG 100
               KD G+ K +   G   E P   D+V+V Y+ +L +G     S    +   F++G G
Sbjct: 25  ITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKG 84

Query: 101 YFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKT 160
               A    V TMK+GE   L  KP+YA+G  G         +PSNA L   +E++ +K 
Sbjct: 85  QVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSL-----PKIPSNATLFFEIELLDFKG 139

Query: 161 VSDITKDKKVLKKILKEGDGYE----NQMMVQWFKLHDGTVFVKKGHDEEPLFEFKI--- 213
                    + +   K            + +       G +F     D      F +   
Sbjct: 140 EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMF-----DCRD-VAFTVGEG 193

Query: 214 DEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI 273
           ++  +  G+D+A++ M++ E  ++ + P Y FG     K    +  N+ L YEV L SF 
Sbjct: 194 EDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFE 251

Query: 274 KEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQ 333
           K KESW+M+T+EK+E A   KE+G V FK GKY +A  +Y + V+++  +   S++E + 
Sbjct: 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA 311

Query: 334 AKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------K 370
           ++   +   LN A C LKL+EY +A + C K L LD                       K
Sbjct: 312 SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK 371

Query: 371 LDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSAS 430
            D +K LE++P N        R++  + ++K +E+N++D + Y N+F K  + +  + A+
Sbjct: 372 GDFEKVLEVNPQNK-----AARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEAN 426

Query: 431 SMAKQEPA 438
               ++ +
Sbjct: 427 KAMGKKTS 434

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  112 bits (280), Expect = 6e-27
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 13/197 (6%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           MK+GE       PE AYG +GS P IP NA L F++ELL +         G I ++   +
Sbjct: 97  MKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLFEDGGII-RRTKRK 155

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYF---CAALAKAVKTMKKGE 117
           G+ + NP +   V +  E R   G +      V FTVG+G        + KA++ M++ E
Sbjct: 156 GEGYSNPNEGATVEIHLEGRC-GGRMFD-CRDVAFTVGEGEDHDIPIGIDKALEKMQREE 213

Query: 118 KVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKE 177
           + +L + P+Y FG+ G+P    +  +  NA L   + + S++   +     ++  K   E
Sbjct: 214 QCILYLGPRYGFGEAGKP----KFGIEPNAELIYEVTLKSFEKAKE---SWEMDTKEKLE 266

Query: 178 GDGYENQMMVQWFKLHD 194
                 +    +FK   
Sbjct: 267 QAAIVKEKGTVYFKGGK 283

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 84.7 bits (209), Expect = 7e-18
 Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 10/161 (6%)

Query: 141 DAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYENQMMVQWFKLH------D 194
           D    N     T  +          KD+ VLK + + G+G E  M+     +H      +
Sbjct: 4   DEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSN 63

Query: 195 GTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKEL 254
           G  F       EP F F + + QVI   D  V TMK+GE+  +  +PEYA+GS  S    
Sbjct: 64  GKKFDSSHDRNEP-FVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLP-- 120

Query: 255 AIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKKE 295
             +P+N+TLF+E+EL+ F  E    D     + +  G+   
Sbjct: 121 -KIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYS 160

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  229 bits (586), Expect = 8e-72
 Identities = 96/324 (29%), Positives = 171/324 (52%), Gaps = 34/324 (10%)

Query: 162 SDITKDKKVLKKILKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQ---V 218
           S + +D  ++++I   G+GY         ++     +  K  D+     F+I E +   +
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRE-LRFEIGEGENLDL 77

Query: 219 IDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKES 278
             GL+RA++ M+KGE ++V ++P YAFGS    KE   +P N+ L YE+ L SF K KES
Sbjct: 78  PYGLERAIQRMEKGEHSIVYLKPSYAFGS--VGKEKFQIPPNAELKYELHLKSFEKAKES 135

Query: 279 WDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLK 338
           W+MN++EK+E +   KE G V FK GKY++A  +Y++ V+++ Y+SSFS+EE Q+A+ L+
Sbjct: 136 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 195

Query: 339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKK 375
           +  +LN A C LKL+ +  A + C+K LELD                       + D +K
Sbjct: 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK 255

Query: 376 ALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQ 435
            L++ P+N        + +  + ++++R    ++ + Y N+F ++ + E    A + +  
Sbjct: 256 VLQLYPNNK-----AAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGD 310

Query: 436 EPAPMVLIARHDTSIKLSMIAIES 459
            P    +     ++   S   +E+
Sbjct: 311 HPTDTEMKEEQKSNTAGSQSQVET 334

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 91.1 bits (226), Expect = 2e-20
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 9/122 (7%)

Query: 46  DICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGY---F 102
            + +DGGI ++I   G+ +  P +   V V  E   +D     +   + F +G+G     
Sbjct: 20  HMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR--ELRFEIGEGENLDL 77

Query: 103 CAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVS 162
              L +A++ M+KGE  ++ +KP YAFG  G+     +  +P NA L   L + S++   
Sbjct: 78  PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAK 133

Query: 163 DI 164
           + 
Sbjct: 134 ES 135

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPT-IPPNAMLQFDVELLGWTSVKDI 47
           M+KGE+++  + P  A+G  G     IPPNA L++++ L  +   K+ 
Sbjct: 88  MEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKES 135

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  206 bits (524), Expect = 1e-62
 Identities = 86/350 (24%), Positives = 143/350 (40%), Gaps = 57/350 (16%)

Query: 114 KKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKK 173
              E  ++T        +  +                                D+KV K+
Sbjct: 12  HDQESEIVTEGSAVVHSEPSQEGNVPPKV-----------------DSEAEVLDEKVSKQ 54

Query: 174 ILKEGDGYE----NQMMVQW-FKLHDGTVFVKKGHDEEPLFEFKI-DEEQVIDGLDRAVK 227
           I+KEG G +    +   + +     +     +    E+   E  +  E++ + GL   V 
Sbjct: 55  IIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVA 114

Query: 228 TMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEK---ESWDMNTQ 284
           +MK GE ALV +  E A+G   +     + P  + L YEVE++ F + K      DM  +
Sbjct: 115 SMKSGERALVHVGWELAYGKEGNFSFPNV-PPMADLLYEVEVIGFDETKEGKARSDMTVE 173

Query: 285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSF--SDEEKQQAKVLKITCN 342
           E+I AA ++K +GN LFK  K E A ++YE A+ Y+G D  F    + +  A  +K  C+
Sbjct: 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCH 233

Query: 343 LNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEI 379
           LN AAC +KLK Y +A   C+ VL  +                       + D +KA + 
Sbjct: 234 LNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293

Query: 380 DPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSA 429
            PD+       +R E + L E+ +   +K  + Y  IF   ++      +
Sbjct: 294 APDDK-----AIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSKS 338

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 94.3 bits (234), Expect = 2e-21
 Identities = 40/207 (19%), Positives = 70/207 (33%), Gaps = 31/207 (14%)

Query: 2   KKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVEG 61
              E+ + T    + + E      +PP    + +V             D  + K+I+ EG
Sbjct: 12  HDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVL------------DEKVSKQIIKEG 59

Query: 62  KKWENPKDLDEVFVKYEVRLEDGTLISKS-----DGVEFTVGD-GYFCAALAKAVKTMKK 115
                P      F+ Y    ++     +        +E  +G      A LA  V +MK 
Sbjct: 60  H-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKS 118

Query: 116 GEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKIL 175
           GE+ L+ V  + A+GK G         VP  A+L   +E++ +    +      +  +  
Sbjct: 119 GERALVHVGWELAYGKEGNF---SFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVE-- 173

Query: 176 KEGDGYENQMMVQWFKLHDGTVFVKKG 202
                 E        K  DG    K+ 
Sbjct: 174 ------ERIGAADRRK-MDGNSLFKEE 193

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 1   MKKGENAVFTIPPELAYGESGSPP--TIPPNAMLQFDVELLGWTSVK--------DICKD 50
           MK GE A+  +  ELAYG+ G+     +PP A L ++VE++G+   K         + + 
Sbjct: 116 MKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEER 175

Query: 51  GGIFKKILVEGKKWENPKDLDEVFVKYEVRLE 82
            G   +  ++G      + L+E   +YE+ + 
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIA 207

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  171 bits (436), Expect = 2e-50
 Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLG-WTSVKDICKDGGIFKKILV 59
           MK GE    T  PE AYG +GSPP IPPNA L F+VEL           +DGGI ++I  
Sbjct: 117 MKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQT 176

Query: 60  EGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGY---FCAALAKAVKTMKKG 116
            G+ +  P +   V V  E   +D     +   + F +G+G        L +A++ M+KG
Sbjct: 177 RGEGYAKPNEGAIVEVALEGYYKDKLFDQR--ELRFEIGEGENLDLPYGLERAIQRMEKG 234

Query: 117 EKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSD 163
           E  ++ +KP YAFG  G+        +P NA L   L + S++   +
Sbjct: 235 EHSIVYLKPSYAFGSVGKEKFQ----IPPNAELKYELHLKSFEKAKE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  171 bits (434), Expect = 4e-50
 Identities = 85/283 (30%), Positives = 125/283 (44%), Gaps = 42/283 (14%)

Query: 25  TIPPNAMLQFDVELLGWTSVK------------DICKDGGIFKKILVEGKKWENPKDLDE 72
            + P        E+    S                 +D G+ K I  EG   E P   D 
Sbjct: 13  GLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDR 72

Query: 73  VFVKYEVRLEDGTL----ISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYA 128
           VFV Y   L DGT     + + D   F +G G    A   A+ TMK GE   +T KP+YA
Sbjct: 73  VFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYA 132

Query: 129 FGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYENQMMVQ 188
           +G  G P       +P NA L   +E+  +K      ++   + + ++            
Sbjct: 133 YGSAGSPPK-----IPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGE-------G 180

Query: 189 WFKLHDG-TVFVK-------KGHDEEPLFEFKIDEEQVID---GLDRAVKTMKKGEVALV 237
           + K ++G  V V        K  D+     F+I E + +D   GL+RA++ M+KGE ++V
Sbjct: 181 YAKPNEGAIVEVALEGYYKDKLFDQRE-LRFEIGEGENLDLPYGLERAIQRMEKGEHSIV 239

Query: 238 TIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWD 280
            ++P YAFGS   EK    +P N+ L YE+ L SF K KESW+
Sbjct: 240 YLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWE 280

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 98.0 bits (244), Expect = 3e-23
 Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 40/218 (18%)

Query: 132 NGRPATGDEDAVPSNANLHITLEMVSWKTVS------------DITKDKKVLKKILKEGD 179
           +          +    +     EM + ++ +               +D+ VLK I +EG 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGT 62

Query: 180 GYENQMMVQWFKLH------DGTVF---VKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMK 230
           G E  M+     +H      DGT F   + +    +  F F + + +VI   D A+ TMK
Sbjct: 63  GTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRK---DK-FSFDLGKGEVIKAWDIAIATMK 118

Query: 231 KGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAA 290
            GEV  +T +PEYA+GS  S      +P N+TL +EVEL  F  E  + + +        
Sbjct: 119 VGEVCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRI- 174

Query: 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGY--DSSF 326
                      +   Y + ++     V   GY  D  F
Sbjct: 175 ---------QTRGEGYAKPNEGAIVEVALEGYYKDKLF 203

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  150 bits (381), Expect = 2e-43
 Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 30/203 (14%)

Query: 254 LAIVPANSTLFYEVELVSF-IKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKR 312
           +     +       E + F   +K  +D   +EK+++A   KEEGN  FK  +   A  +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVK 60

Query: 313 YEQAVNYIGYDSSFSDEEK-QQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-- 369
           Y++A+++  +   + D+    + K ++I+CNLN A C  K K+Y +A    SKVL++D  
Sbjct: 61  YKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120

Query: 370 ---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKK 408
                                K ++ KA  ++P+N       +R  Y+L   K++E  KK
Sbjct: 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL-----DIRNSYELCVNKLKEARKK 175

Query: 409 DVQFYGNIFAKINKLEQAKSASS 431
           D   +G +F K    E+ K++++
Sbjct: 176 DKLTFGGMFDKGPLYEEKKNSAN 198

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  127 bits (322), Expect = 2e-35
 Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 30/163 (18%)

Query: 281 MNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY---DSSFSDEEKQQAKVL 337
               +K+++    +++GN LF    Y+ A   Y  A+  +          + E  +    
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 338 KITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIK 374
            I    N + C L + +  +AE+  S+VL+ +                       + D+K
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

Query: 375 KALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIF 417
             L   P  +      V  E K++ E+  E        Y  +F
Sbjct: 122 LLLRNHPAAASV----VAREMKIVTERRAEKKADSRVTYSKMF 160

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  106 bits (267), Expect = 7e-28
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 14/129 (10%)

Query: 163 DITKDKKVLKKILKEGDGYEN-----QMMVQWF--KLHDGTVFVKKGHDEEPLFEFKIDE 215
           DI  +  + KK L  G    +     Q++       L +GT        EEP   F + +
Sbjct: 12  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRV-----QEEPELVFTLGD 66

Query: 216 EQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKE 275
             VI  LD +V  M  GE A+VT + +Y +G   S      +P ++ L  EV L + +  
Sbjct: 67  CDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTLKTAVDR 124

Query: 276 KESWDMNTQ 284
            +       
Sbjct: 125 PDLEMSGPS 133

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  105 bits (263), Expect = 3e-27
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 46  DICKDGGIFKKILVEGK-KWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCA 104
           DI  +G + KK LV G      P     V V  +  LE+GT + +   + FT+GD     
Sbjct: 12  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 71

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDI 164
           AL  +V  M  GE  ++T   +Y +G  G         +P +A L + + + +     D+
Sbjct: 72  ALDLSVPLMDVGETAMVTADSKYCYGPQGSR----SPYIPPHAALCLEVTLKTAVDRPDL 127

Query: 165 TKD 167
              
Sbjct: 128 EMS 130

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 1   MKKGENAVFTIPPELAYGESGS-PPTIPPNAMLQFDVELLGWTSVKDICKDG 51
           M  GE A+ T   +  YG  GS  P IPP+A L  +V L       D+   G
Sbjct: 80  MDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLEMSG 131

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  102 bits (256), Expect = 2e-26
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 15/118 (12%)

Query: 163 DITKDKKVLKKILKEGDGYEN-----QMMVQWF--KLHDGTVFVKKGHDEEPLFEFKIDE 215
           DI  +  + KK L  G    +     Q++       L +GT        EEP   F + +
Sbjct: 8   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRV-----QEEPELVFTLGD 62

Query: 216 EQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI 273
             VI  LD +V  M  GE A+VT + +Y +G          +P ++ L  EV L + +
Sbjct: 63  CDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSP---YIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  101 bits (255), Expect = 3e-26
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 46  DICKDGGIFKKILVEGK-KWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCA 104
           DI  +G + KK LV G      P     V V  +  LE+GT + +   + FT+GD     
Sbjct: 8   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 67

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
           AL  +V  M  GE  ++T   +Y +G  GR        +P +A L + + + +  
Sbjct: 68  ALDLSVPLMDVGETAMVTADSKYCYGPQGRSPY-----IPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 80.0 bits (198), Expect = 2e-18
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWT 42
           M  GE A+ T   +  YG  G  P IPP+A L  +V L    
Sbjct: 76  MDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  102 bits (255), Expect = 7e-26
 Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 17/154 (11%)

Query: 136 ATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYEN-----QMMVQWF 190
           A   E                 W    DI  +  + KK L  G    +     Q++    
Sbjct: 14  ALAREFLAAMEPEPAPAPAPEEWL---DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL 70

Query: 191 --KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSC 248
              L +GT        EEP   F + +  VI  LD +V  M  GE A+VT + +Y +G  
Sbjct: 71  QTSLENGTRV-----QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQ 125

Query: 249 SSEKELAIVPANSTLFYEVELVSFIKEKESWDMN 282
            S      +P ++ L  EV L + +  +     +
Sbjct: 126 GSRS--PYIPPHAALCLEVTLKTAVDLEHHHHHH 157

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 94.1 bits (234), Expect = 6e-23
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 46  DICKDGGIFKKILVEGK-KWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCA 104
           DI  +G + KK LV G      P     V V  +  LE+GT + +   + FT+GD     
Sbjct: 38  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 97

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTV 161
           AL  +V  M  GE  ++T   +Y +G  G         +P +A L + + + +   +
Sbjct: 98  ALDLSVPLMDVGETAMVTADSKYCYGPQGSR----SPYIPPHAALCLEVTLKTAVDL 150

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 75.6 bits (186), Expect = 2e-16
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 1   MKKGENAVFTIPPELAYGESGS-PPTIPPNAMLQFDVELLGWTSVK 45
           M  GE A+ T   +  YG  GS  P IPP+A L  +V L     ++
Sbjct: 106 MDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDLE 151

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  107 bits (269), Expect = 8e-26
 Identities = 50/232 (21%), Positives = 91/232 (39%), Gaps = 42/232 (18%)

Query: 217 QVIDGLDRAVKTMKKGEV------ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELV 270
           QVI G+    K ++  EV       L  I        C   KE                 
Sbjct: 151 QVIKGMG-VAKILENVEVKGEKPAKLCVIA------ECGELKEGDDWGIFPKDGSGDSHP 203

Query: 271 SFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEE 330
            F ++ +    +  + +  +   K  GN  FK+  +E A K+Y + + Y+    + +++ 
Sbjct: 204 DFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA 263

Query: 331 KQQA-KVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDK------------------- 370
                + + ++C LN  ACKLK+ +++ A   C + LE+D                    
Sbjct: 264 DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 323

Query: 371 ----LDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFA 418
                D+KKA EI P++       ++ E   +K+K++    K+   Y  +FA
Sbjct: 324 DQALADLKKAQEIAPEDK-----AIQAELLKVKQKIKAQKDKEKAAYAKMFA 370

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 97.2 bits (242), Expect = 7e-24
 Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 10/135 (7%)

Query: 165 TKDKKVLKKILKEGDGYE----NQMMVQWF-KLHDGTVFVKKGHDEEPLFEFKI-DEEQV 218
             D+KV K+I+KEG G +    +   + +     +     +    E+   E  +  E++ 
Sbjct: 46  VLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKE 105

Query: 219 IDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKES 278
           + GL   V +MK GE ALV +  E A+G   +     + P  + L YEVE++ F + KE 
Sbjct: 106 LAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNV-PPMADLLYEVEVIGFDETKEG 164

Query: 279 ---WDMNTQEKIEAA 290
               DM  +E+I AA
Sbjct: 165 KARSDMTVEERIGAA 179

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 81.1 bits (200), Expect = 4e-18
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 24/182 (13%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
               E+ + T    + + E      +PP    + +V             D  + K+I+ E
Sbjct: 11  THDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEV------------LDEKVSKQIIKE 58

Query: 61  GKKWENPKDLDEVFVKYEVRLEDGTLI---SKSDG--VEFTVG-DGYFCAALAKAVKTMK 114
           G     P      F+ Y    ++       +  +   +E  +G +    A LA  V +MK
Sbjct: 59  GH-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMK 117

Query: 115 KGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDIT--KDKKVLK 172
            GE+ L+ V  + A+GK G  +      VP  A+L   +E++ +    +     D  V +
Sbjct: 118 SGERALVHVGWELAYGKEGNFSFP---NVPPMADLLYEVEVIGFDETKEGKARSDMTVEE 174

Query: 173 KI 174
           +I
Sbjct: 175 RI 176

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 92.0 bits (229), Expect = 2e-22
 Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDIC--KDGGIFK 55
           M KGE A FTI  +  YG++GSPP IP  A L F+VEL  W S +DI   +DG I +
Sbjct: 80  MTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-SAEDISPDRDGTILR 135

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 87.3 bits (217), Expect = 8e-21
 Identities = 45/128 (35%), Positives = 57/128 (44%), Gaps = 16/128 (12%)

Query: 164 ITKDKKVLKKILKEGDGYENQMMVQWFKLH------DGTVF---VKKGHDEEPLFEFKID 214
             KD  VLK I KEG G          K+H      +GT F     +G   +  F F + 
Sbjct: 10  PKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRG---DQ-FSFNLG 65

Query: 215 EEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIK 274
              VI G D  V TM KGEVA  TI  +Y +G   S      +P  +TL +EVEL  +  
Sbjct: 66  RGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGS---PPKIPGGATLIFEVELFEWSA 122

Query: 275 EKESWDMN 282
           E  S D +
Sbjct: 123 EDISPDRD 130

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 78.9 bits (195), Expect = 8e-18
 Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTL----ISKSDGVEFTVGDGYFCA 104
           KDGG+ K I  EG+    P     V V Y   LE+GT       + D   F +G G    
Sbjct: 12  KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 71

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDI 164
                V TM KGE    T++  Y +G  G P       +P  A L   +E+  W    DI
Sbjct: 72  GWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPK-----IPGGATLIFEVELFEWSA-EDI 125

Query: 165 TKDK 168
           + D+
Sbjct: 126 SPDR 129

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 89.2 bits (222), Expect = 1e-21
 Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 16/122 (13%)

Query: 163 DITKDKKVLKKILKEGDGYENQMMVQWFKLH------DGTVF---VKKGHDEEPLFEFKI 213
              KD+ VLK + + G+G E  M+     +H      +G  F     +    EP F F +
Sbjct: 14  TSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN---EP-FVFSL 69

Query: 214 DEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI 273
            + QVI   D  V TMKKGE+  +  +PEYA+GS  S   L  +P+N+TLF+E+EL+ F 
Sbjct: 70  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFK 126

Query: 274 KE 275
            E
Sbjct: 127 GE 128

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 83.1 bits (206), Expect = 2e-19
 Identities = 22/41 (53%), Positives = 26/41 (63%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGW 41
           MKKGE       PE AYG +GS P IP NA L F++ELL +
Sbjct: 85  MKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 75.8 bits (187), Expect = 7e-17
 Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTL----ISKSDGVEFTVGDGYFCA 104
           KD G+ K +   G   E P   D+V+V Y+ +L +G        +++   F++G G    
Sbjct: 17  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 76

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
           A    V TMKKGE   L  KP+YA+G  G         +PSNA L   +E++ +K
Sbjct: 77  AWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK-----IPSNATLFFEIELLDFK 126

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 88.8 bits (221), Expect = 2e-21
 Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 22/144 (15%)

Query: 140 EDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYE----NQMMVQ---WFKL 192
           E       +L    E +S + + DI+ D+ VLK +++EG G        ++V+   +   
Sbjct: 2   EGDDAPGQSL---YERLSQRML-DISGDRGVLKDVIREGAGDLVAPDASVLVKYSGYL-E 56

Query: 193 HDGTVF---VKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCS 249
           H    F     +     P    K+ E+  + G++  + +M++GE+A    +P YA+G+  
Sbjct: 57  HMDRPFDSNYFRK---TP-RLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLG 112

Query: 250 SEKELAIVPANSTLFYEVELVSFI 273
                 ++P N+T+ +E+EL+ F+
Sbjct: 113 CP---PLIPPNTTVLFEIELLDFL 133

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 82.3 bits (204), Expect = 4e-19
 Identities = 20/42 (47%), Positives = 26/42 (61%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWT 42
           M++GE A F   P  AYG  G PP IPPN  + F++ELL + 
Sbjct: 92  MRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL 133

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 46  DICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLED-GTL----ISKSDGVEFTVGDG 100
           DI  D G+ K ++ EG   +       V VKY   LE           +       +G+ 
Sbjct: 21  DISGDRGVLKDVIREGA-GDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGED 79

Query: 101 YFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW 158
                +   + +M++GE      KP YA+G  G P       +P N  +   +E++ +
Sbjct: 80  ITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPL-----IPPNTTVLFEIELLDF 132

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 87.0 bits (216), Expect = 1e-20
 Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 47/152 (30%)

Query: 280 DMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKI 339
                    +  + ++EGN LFK G Y  A   Y QA   +G D++  D         + 
Sbjct: 18  PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQA---LGLDATPQD---------QA 65

Query: 340 TCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKA 376
             + N AAC LKL++Y +AE   SK +E D                        LD+++ 
Sbjct: 66  VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125

Query: 377 LEIDPDNSLEAGWGVRMEYKLLKEKVREYNKK 408
           + ++P N            K+ +E +R  +  
Sbjct: 126 VSLEPKN------------KVFQEALRNISGP 145

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 85.8 bits (213), Expect = 1e-20
 Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 16/119 (13%)

Query: 167 DKKVLKKILKEGDGYE----NQMMVQWF--KLHDGTVF-------VKKGHDEEPLFEFKI 213
             K  K ILK+GD         ++  W+   L DGTVF        KK  + +P   FK+
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKP-LSFKV 61

Query: 214 DEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
              +VI G D A+ TM KGE A + IEPE+A+G     +  A +P N+ L +EVELV  
Sbjct: 62  GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNTKLIFEVELVDI 118

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 75.4 bits (186), Expect = 9e-17
 Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 1   MKKGENAVFTIPPELAYGESGSP-PTIPPNAMLQFDVELLGW 41
           M KGE A   I PE AYG+ G P   IPPN  L F+VEL+  
Sbjct: 77  MSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 15/120 (12%)

Query: 50  DGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGV-----------EFTVG 98
                K IL +G K   PK  D V   Y   L DGT+   +               F VG
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 99  DGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW 158
            G       +A+ TM KGEK  L ++P++A+GK G+P       +P N  L   +E+V  
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAK----IPPNTKLIFEVELVDI 118

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 85.3 bits (212), Expect = 2e-20
 Identities = 22/47 (46%), Positives = 27/47 (57%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDI 47
           M +GE     IP EL YGE G+PP IP  A L F+VELL      ++
Sbjct: 56  MCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRTEL 102

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 77.2 bits (191), Expect = 1e-17
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 191 KLHDGTVF---VKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGS 247
           KL DGT F   + +    +P F F +   QVI G D+ +  M +GE   + I  E  +G 
Sbjct: 19  KLEDGTEFDSSLPQN---QP-FVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGE 74

Query: 248 CSSEKELAIVPANSTLFYEVELVSFIKEKE 277
             +      +P  +TL +EVEL+   +  E
Sbjct: 75  RGAP---PKIPGGATLVFEVELLKIERRTE 101

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 61.4 bits (150), Expect = 4e-12
 Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 65  ENPKDLDEVFVKYEVRLEDGTL----ISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVL 120
              +  D + + Y  +LEDGT     + ++    F++G G       + +  M +GEK  
Sbjct: 4   IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRK 63

Query: 121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDI 164
           L +  +  +G+ G P       +P  A L   +E++  +  +++
Sbjct: 64  LVIPSELGYGERGAP-----PKIPGGATLVFEVELLKIERRTEL 102

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 85.9 bits (213), Expect = 4e-20
 Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 16/122 (13%)

Query: 163 DITKDKKVLKKILKEGDGYENQMMVQWFKLH------DGTVF---VKKGHDEEPLFEFKI 213
              KD+ VLK + + G+G E  M+     +H      +G  F     +    EP F F +
Sbjct: 30  TSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN---EP-FVFSL 85

Query: 214 DEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI 273
            + QVI   D  V TMKKGE+  +  +PEYA+GS  S   L  +P+N+TLF+E+EL+ F 
Sbjct: 86  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFK 142

Query: 274 KE 275
            E
Sbjct: 143 GE 144

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 81.2 bits (201), Expect = 1e-18
 Identities = 22/41 (53%), Positives = 26/41 (63%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGW 41
           MKKGE       PE AYG +GS P IP NA L F++ELL +
Sbjct: 101 MKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 74.3 bits (183), Expect = 4e-16
 Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTL----ISKSDGVEFTVGDGYFCA 104
           KD G+ K +   G   E P   D+V+V Y+ +L +G        +++   F++G G    
Sbjct: 33  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 92

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
           A    V TMKKGE   L  KP+YA+G  G         +PSNA L   +E++ +K
Sbjct: 93  AWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK-----IPSNATLFFEIELLDFK 142

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 85.0 bits (211), Expect = 4e-20
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVK 45
           M+K E  +  I     YG+ G   +IP N++L F++ELL +  ++
Sbjct: 85  MRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 82.3 bits (204), Expect = 3e-19
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 25/129 (19%)

Query: 163 DITKDKKVLKKILKEGDGYENQM-----MVQWFKLH-------DGTVF---VKKGHDEEP 207
           ++T D  V+K ILK+GD  E  +      V    +H        G VF     +     P
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEV---TVHYVGKLESTGKVFDSSFDRN---VP 64

Query: 208 LFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEV 267
            F+F +++ +VI G D  V +M+K E  LV IE  Y +G          +P NS L +E+
Sbjct: 65  -FKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCG---ESIPGNSVLLFEI 120

Query: 268 ELVSFIKEK 276
           EL+SF + +
Sbjct: 121 ELLSFRELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 12/124 (9%)

Query: 45  KDICKDGGIFKKILVEGKKWE--NPKDLDEVFVKYEVRLED-GTL----ISKSDGVEFTV 97
            ++  DGG+ K IL +G + E   PK  +EV V Y  +LE  G +      ++   +F +
Sbjct: 10  VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL 69

Query: 98  GDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVS 157
             G         V +M+K EK L+ ++  Y +G  G       +++P N+ L   +E++S
Sbjct: 70  EQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCG-----ESIPGNSVLLFEIELLS 124

Query: 158 WKTV 161
           ++ +
Sbjct: 125 FREL 128

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 82.6 bits (205), Expect = 1e-19
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)

Query: 170 VLKKILKEGDGYENQMMVQWFKLH------DGTVF---VKKGHDEEPLFEFKIDEEQVID 220
           V  + +  GDG       Q   +H      DG  F     +    +P F+F + +++VI 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRN---KP-FKFMLGKQEVIR 57

Query: 221 GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
           G +  V  M  G+ A +TI P+YA+G+        I+P ++TL ++VEL+  
Sbjct: 58  GWEEGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKL 106

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 81.8 bits (203), Expect = 3e-19
 Identities = 22/41 (53%), Positives = 26/41 (63%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGW 41
           M  G+ A  TI P+ AYG +G P  IPP+A L FDVELL  
Sbjct: 66  MSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 69.5 bits (171), Expect = 6e-15
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 52  GIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTL----ISKSDGVEFTVGDGYFCAALA 107
           G+  + +  G     PK      V Y   LEDG        ++   +F +G         
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 108 KAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
           + V  M  G++  LT+ P YA+G  G P       +P +A L   +E++  +
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGI-----IPPHATLVFDVELLKLE 107

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 82.2 bits (204), Expect = 3e-19
 Identities = 22/41 (53%), Positives = 24/41 (58%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGW 41
           +  GE A  TIP   AYG  G P  IPPN+ L FDVELL  
Sbjct: 72  LSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV 112

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 81.9 bits (203), Expect = 3e-19
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 16/116 (13%)

Query: 165 TKDKKVLKKILKEGDGYENQMMVQWFKLH------DGTVF---VKKGHDEEPLFEFKIDE 215
             +  V    +  GDG           +H      +G  F   V +G    P F+  I  
Sbjct: 3   VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRG---SP-FQCNIGV 58

Query: 216 EQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVS 271
            QVI G D  +  +  GE A +TI   YA+G         ++P NSTL ++VEL+ 
Sbjct: 59  GQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP---GLIPPNSTLVFDVELLK 111

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 70.3 bits (173), Expect = 4e-15
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 9/113 (7%)

Query: 50  DGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTL----ISKSDGVEFTVGDGYFCAA 105
           +G +    +  G     PK  D V + Y   LE+G      + +    +  +G G     
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 106 LAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW 158
               +  +  GEK  LT+   YA+G  G P       +P N+ L   +E++  
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRGFPGL-----IPPNSTLVFDVELLKV 112

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 82.0 bits (203), Expect = 1e-18
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 17/83 (20%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           M++G+     IP +LAYG +G    IPP + L+FDVEL+                  + +
Sbjct: 101 MREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS-----------------IKD 143

Query: 61  GKKWENPKDLDEVFVKYEVRLED 83
           G K    +++DE+  K E   ED
Sbjct: 144 GGKGRTAEEVDEILRKAEEDRED 166

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 19/132 (14%)

Query: 173 KILKEGDGYENQMMVQWFKLH------DGTVF---VKKGHDEEPLFEFKIDEEQVIDGLD 223
           + +  G G     +    ++H      DGTVF    ++G   +P   F+ +  +VI G  
Sbjct: 42  QRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERG---KP-TTFRPN--EVIKGWT 95

Query: 224 RAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNT 283
            A++ M++G+   + I  + A+G         ++P  S L ++VEL+S IK+        
Sbjct: 96  EALQLMREGDRWRLFIPYDLAYGVTGGG---GMIPPYSPLEFDVELIS-IKDGGKGRTAE 151

Query: 284 QEKIEAAGKKKE 295
           +        +++
Sbjct: 152 EVDEILRKAEED 163

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 52  GIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLI--SKSDGVEFTVGDGYFCAALAKA 109
           G+  + +  G     P   D+  V Y  RL DGT+   S+  G   T           +A
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNEVIKGWTEA 97

Query: 110 VKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVS------WKTVSD 163
           ++ M++G++  L +    A+G  G         +P  + L   +E++S       +T  +
Sbjct: 98  LQLMREGDRWRLFIPYDLAYGVTGGGG-----MIPPYSPLEFDVELISIKDGGKGRTAEE 152

Query: 164 ITKDKKVLKKILKE 177
           + +  +  ++  ++
Sbjct: 153 VDEILRKAEEDRED 166

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 80.4 bits (199), Expect = 2e-18
 Identities = 26/40 (65%), Positives = 29/40 (72%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLG 40
           M  GE A+FTIP +LAYGE G PP IPP A L F+VELL 
Sbjct: 90  MTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 78.8 bits (195), Expect = 6e-18
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 16/122 (13%)

Query: 159 KTVSDITKDKKVLKKILKEGDGYENQMMVQWFKLH------DGTVF---VKKGHDEEPLF 209
           +T    +   ++ KK+L  GDG       +   +H      DG  F     +G   +P F
Sbjct: 15  QTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRG---KP-F 70

Query: 210 EFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVEL 269
           +F +   +VI G D+ V TM  GE AL TI  + A+G         ++P  +TL +EVEL
Sbjct: 71  QFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYP---PVIPPKATLVFEVEL 127

Query: 270 VS 271
           ++
Sbjct: 128 LA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 50  DGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTL----ISKSDGVEFTVGDGYFCAA 105
              + KK+L  G     P+   +V V Y+ R  DG       S+    +FT+G G     
Sbjct: 23  SAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKG 82

Query: 106 LAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVS 157
             + V TM  GEK L T+  Q A+G+ G P       +P  A L   +E+++
Sbjct: 83  WDQGVATMTLGEKALFTIPYQLAYGERGYPPV-----IPPKATLVFEVELLA 129

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 76.1 bits (188), Expect = 7e-17
 Identities = 22/40 (55%), Positives = 25/40 (62%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLG 40
           MK G     TIPP+L YG  G+   IPPNA L F+VELL 
Sbjct: 93  MKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 159 KTVSDITKDKKVLKKILKEGDGYE----NQMMVQWF-KLHDGTVF---VKKGHDEEPLFE 210
             ++ +T +  +  + L EG G E      + V +   L DG  F     +    +P F 
Sbjct: 19  SHMTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRN---DP-FA 74

Query: 211 FKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELV 270
           F +    VI G D  V+ MK G V  +TI P+  +G+  +     ++P N+TL +EVEL+
Sbjct: 75  FVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 131

Query: 271 S 271
            
Sbjct: 132 D 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 10/112 (8%)

Query: 50  DGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTL----ISKSDGVEFTVGDGYFCAA 105
           + G+  + L EG      +    V V Y   L DG        ++D   F +G G     
Sbjct: 27  ESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 85

Query: 106 LAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVS 157
             + V+ MK G    LT+ PQ  +G  G         +P NA L   +E++ 
Sbjct: 86  WDEGVQGMKVGGVRRLTIPPQLGYGARGAG-----GVIPPNATLVFEVELLD 132

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 75.2 bits (185), Expect = 8e-16
 Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 19/187 (10%)

Query: 93  VEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHIT 152
           + F +        L +A    +   K + +++  Y   +     T ++  +  N  +   
Sbjct: 33  IFFKIKKTTPLRRLMEAFAKRQG--KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90

Query: 153 LEMVSWKTVSDITKDKKVLKKILKEGDGYE----NQMMVQWF-KLHDGTVF---VKKGHD 204
            E +   TV  +T +  +  + L EG G E      + V +   L DG  F     +   
Sbjct: 91  REQIGGSTV--VTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRN-- 146

Query: 205 EEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLF 264
            +P F F +    VI G D  V+ MK G V  +TI P+  +G+  +     ++P N+TL 
Sbjct: 147 -DP-FAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAA---GVIPPNATLV 201

Query: 265 YEVELVS 271
           +EVEL+ 
Sbjct: 202 FEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 75.2 bits (185), Expect = 8e-16
 Identities = 22/40 (55%), Positives = 25/40 (62%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLG 40
           MK G     TIPP+L YG  G+   IPPNA L F+VELL 
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 10/112 (8%)

Query: 50  DGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTL----ISKSDGVEFTVGDGYFCAA 105
           + G+  + L EG   E  +    V V Y   L DG        ++D   F +G G     
Sbjct: 103 ESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 161

Query: 106 LAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVS 157
             + V+ MK G    LT+ PQ  +G  G         +P NA L   +E++ 
Sbjct: 162 WDEGVQGMKVGGVRRLTIPPQLGYGARGAA-----GVIPPNATLVFEVELLD 208

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 1   MKKGENAVFTIPPELAYGESG-----SPPTIPPNAMLQFDVELLGW 41
           M  G      IPPELAYG+ G         IPP ++L FD+E +G 
Sbjct: 83  MLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 20/118 (16%)

Query: 170 VLKKILKEGDGYE----NQMMVQWF-KLHDGTVF---VKKGHDEEPLFEFKIDEEQVIDG 221
           +       G G E      +   +  KL +G VF     +G   +P   F+I   +VI G
Sbjct: 14  LAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRG---KP-LTFRIGVGEVIKG 69

Query: 222 LDRAV------KTMKKGEVALVTIEPEYAFGS--CSSEKELAIVPANSTLFYEVELVS 271
            D+ +        M  G    + I PE A+G      +    ++P  S L +++E + 
Sbjct: 70  WDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG 127

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 50  DGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTL----ISKSDGVEFTVGDGYFCA- 104
             G+     V G           +   Y  +LE+G +     ++   + F +G G     
Sbjct: 11  PSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKG 69

Query: 105 -----ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW 158
                  +  +  M  G K  L + P+ A+G  G    G    +P  + L   +E +  
Sbjct: 70  WDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLG 40
           M  GE     IPP L YG+ G    IPP + L F+++LL 
Sbjct: 82  MCVGEKRKLIIPPALGYGKEGKGK-IPPESTLIFNIDLLE 120

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 70.4 bits (173), Expect = 5e-15
 Identities = 22/126 (17%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 158 WKTVSDITKDKKVLKKILKEGDGYENQ----MMVQ-----WFKLHDGTVF--VKKGHDEE 206
           ++++  +  + +V  ++L++      +     ++      + +  DG++F    K ++ +
Sbjct: 2   FQSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEK-DGSLFHSTHKHNNGQ 60

Query: 207 PLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYE 266
           P   F +   + + G D+ +K M  GE   + I P   +G    ++    +P  STL + 
Sbjct: 61  P-IWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYG----KEGKGKIPPESTLIFN 115

Query: 267 VELVSF 272
           ++L+  
Sbjct: 116 IDLLEI 121

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 14/129 (10%)

Query: 41  WTSVKDICKDGGIFKKILVEGKKW-ENPKDLDEVFVKYEVRLE-DGTL----ISKSDG-- 92
           + S+  +  +  +  ++L +        K  D + V YE  LE DG+L       ++G  
Sbjct: 2   FQSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQP 61

Query: 93  VEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHIT 152
           + FT+G         + +K M  GEK  L + P   +GK G+        +P  + L   
Sbjct: 62  IWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKG------KIPPESTLIFN 115

Query: 153 LEMVSWKTV 161
           ++++  +  
Sbjct: 116 IDLLEIRNG 124

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 67.3 bits (165), Expect = 8e-14
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 38/144 (26%)

Query: 284 QEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNL 343
             K  +A + KE+GN LF   KY  A+  Y +A+      + +                 
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YT 47

Query: 344 NNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEID 380
           N A C LK+++ +QA   C + LELD                         ++++A  + 
Sbjct: 48  NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107

Query: 381 PDNSLEAGWGVRMEYKLLKEKVRE 404
            +  L  G  +    ++ K+K   
Sbjct: 108 KEQRLNFGDDIPSALRIAKKKRWN 131

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 64.5 bits (158), Expect = 6e-13
 Identities = 33/148 (22%), Positives = 52/148 (35%), Gaps = 45/148 (30%)

Query: 281 MNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKIT 340
           + ++E    A + K EGN   K   +E A   Y +A+     ++ +              
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY-------------- 48

Query: 341 CNLNN-AACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKA 376
               N AA   KL  Y  A + C + + +D                           KKA
Sbjct: 49  --FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKA 106

Query: 377 LEIDPDNSLEAGWGVRMEYKLLKEKVRE 404
           LE+DPDN        +   K+ + K+RE
Sbjct: 107 LELDPDNE-----TYKSNLKIAELKLRE 129

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 65.5 bits (160), Expect = 7e-13
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 45/151 (29%)

Query: 283 TQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCN 342
               ++ A + K + N  FKA  YE A K Y QA+     ++ +                
Sbjct: 6   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------- 49

Query: 343 LNN-AACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALE 378
             N +   L+ + Y  A    ++ +ELD                         D +  ++
Sbjct: 50  YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVK 109

Query: 379 IDPDNSLEAGWGVRMEYKLLKEKVREYNKKD 409
           + P +        +M+Y+   + V++   + 
Sbjct: 110 VKPHDK-----DAKMKYQECNKIVKQKAFER 135

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 66.7 bits (163), Expect = 7e-13
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLG 40
           M  G      IP + AYG  G+   I P   L F++EL+ 
Sbjct: 177 MPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 14/107 (13%)

Query: 173 KILKEGDG----YENQMMVQWF-KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVK 227
             L  G G       ++ V++  +L DG +F +     +P   F++D   VI G   A++
Sbjct: 122 TELTPGTGPKPDANGRVEVRYVGRLPDGKIFDQST---QP-QWFRLD--SVISGWTSALQ 175

Query: 228 TMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIK 274
            M  G    + I  + A+G+  +     ++   + L +E+EL++  +
Sbjct: 176 NMPTGAKWRLVIPSDQAYGAEGAG---DLIDPFTPLVFEIELIAVSQ 219

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 56  KILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS-DGVEFTVGDGYFCAALAKAVKTMK 114
             L  G     P     V V+Y  RL DG +  +S     F +      +    A++ M 
Sbjct: 122 TELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQPQWFRLDSV--ISGWTSALQNMP 178

Query: 115 KGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVS 157
            G K  L +    A+G  G       D +     L   +E+++
Sbjct: 179 TGAKWRLVIPSDQAYGAEGAG-----DLIDPFTPLVFEIELIA 216

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLG 40
           M  G      +P  LAYG       I PN  L F + L+ 
Sbjct: 169 MPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 17/110 (15%)

Query: 173 KILKEGDG----YENQMMVQWF-KLHDGTVF---VKKGHDEEPLFEFKIDEEQVIDGLDR 224
           K++  G+G      + + V++  +L DGTVF    K G   +P   F++   QVI G   
Sbjct: 111 KVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTG---KP-ATFQVS--QVIPGWTE 164

Query: 225 AVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIK 274
           A++ M  G    + +    A+G  S       +  N TL +++ L+S  K
Sbjct: 165 ALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK 211

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 56  KILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDG----VEFTVGDGYFCAALAKAVK 111
           K++  G     P   D V V+Y  RL DGT+   ++       F V          +A++
Sbjct: 111 KVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQV--IPGWTEALQ 167

Query: 112 TMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVS 157
            M  G    + V    A+G            +  N  L   + ++S
Sbjct: 168 LMPAGSTWEIYVPSGLAYGPRSVGG-----PIGPNETLIFKIHLIS 208

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 40/132 (30%)

Query: 276 KESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAK 335
                 ++    + A   K +GN  F+ G Y +A K Y +A+     D+           
Sbjct: 2   GHHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL--------- 52

Query: 336 VLKITCNLNN-AACKLKLKEYKQAEKLCSKVLELD-----------------------KL 371
                   +N AAC  KL E++ A K C + ++L+                         
Sbjct: 53  -------YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMD 105

Query: 372 DIKKALEIDPDN 383
             +KAL++D   
Sbjct: 106 VYQKALDLDSSC 117

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 43/146 (29%)

Query: 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNN-A 346
             + K K EGN      +Y +A   Y QA++    +  +                L+N A
Sbjct: 9   PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY----------------LSNRA 52

Query: 347 ACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDN 383
           A      ++++A +       +D                       K   +K +E + + 
Sbjct: 53  AAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112

Query: 384 SLEAGWGVRMEYKLLKEKVREYNKKD 409
             +A   ++   +  K K+ E N+  
Sbjct: 113 GSDA---MKRGLETTKRKIEEANRGA 135

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 62.6 bits (153), Expect = 3e-12
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 40/120 (33%)

Query: 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNN-A 346
           E A ++K +GN  FK G Y  A + Y +AV     ++                   +N A
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL----------------YSNRA 54

Query: 347 ACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDN 383
           AC  KL E+++A   C   + LD                       +   + AL++DP N
Sbjct: 55  ACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 19/139 (13%), Positives = 47/139 (33%), Gaps = 45/139 (32%)

Query: 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNN- 345
           +E   + KE+GN     G  + A + Y +A+    ++                    +N 
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVL----------------YSNR 44

Query: 346 AACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPD 382
           +A   K  +Y++A +   K ++L                        K   ++ L+ + +
Sbjct: 45  SAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104

Query: 383 NSLEAGWGVRMEYKLLKEK 401
           N       ++   + ++ +
Sbjct: 105 NP-----QLKEGLQNMEAR 118

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 23/139 (16%), Positives = 39/139 (28%), Gaps = 43/139 (30%)

Query: 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNN-AAC 348
           A + + EG   F    +  A K Y + +     D+                   +N AA 
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG----------------YSNRAAA 47

Query: 349 KLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSL 385
             KL  + +A   C+K +E D                          +  A   D + + 
Sbjct: 48  LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 107

Query: 386 EAGWGVRMEYKLLKEKVRE 404
            +      E   L  K  +
Sbjct: 108 GS---SAREIDQLYYKASQ 123

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLG 40
           +KKG      IPPELAYG++G P  IPPN+ L FDVELL 
Sbjct: 184 IKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLD 222

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 18/107 (16%)

Query: 173 KILKEGDG----YENQMMVQWF-KLHDGTVF---VKKGHDEEPLFEFKIDEEQVIDGLDR 224
           ++++ G G      + ++V +   L DG  F     +G   EP   F++D   VI G   
Sbjct: 126 QVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRG---EP-LSFRLD--GVIPGWTE 179

Query: 225 AVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVS 271
            +K +KKG    + I PE A+G    +  +  +P NSTL ++VEL+ 
Sbjct: 180 GLKNIKKGGKIKLVIPPELAYG----KAGVPGIPPNSTLVFDVELLD 222

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 13/108 (12%)

Query: 56  KILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDG----VEFTVGDGYFCAALAKAVK 111
           +++  GK  E PKD D V V Y+  L DG     S      + F +          + +K
Sbjct: 126 QVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWTEGLK 182

Query: 112 TMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
            +KKG K+ L + P+ A+GK G P       +P N+ L   +E++  K
Sbjct: 183 NIKKGGKIKLVIPPELAYGKAGVP------GIPPNSTLVFDVELLDVK 224

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 38/143 (26%)

Query: 289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAAC 348
           +A + KE+GN LF   KY  A+  Y +A+      + +                 N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYY---------------TNRALC 47

Query: 349 KLKLKEYKQAEKLCSKVLELDK-----------------------LDIKKALEIDPDNSL 385
            LK+++ +QA   C + LELD                         ++++A  +  +  L
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

Query: 386 EAGWGVRMEYKLLKEKVREYNKK 408
             G  +    ++ K+K     ++
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEE 130

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 17/89 (19%)

Query: 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNN- 345
           +    K+KE+GN LFK G Y  A   Y+Q +     +                    +N 
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVG----------------YSNK 44

Query: 346 AACKLKLKEYKQAEKLCSKVLELDKLDIK 374
           A   +KL EY QA ++C + L        
Sbjct: 45  AMALIKLGEYTQAIQMCQQGLRYTSTAEH 73

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 44/156 (28%)

Query: 283 TQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCN 342
           +    +AA  +K+ GN  +K   +E+A   Y++A+     + +F                
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF---------------- 44

Query: 343 LNN-AACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEK 401
            NN AA   + K++ +  + C           +KA+E+  +                K  
Sbjct: 45  YNNKAAVYFEEKKFAECVQFC-----------EKAVEVGRET-----------RADYKLI 82

Query: 402 VREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEP 437
            +  ++      GN F K N L  A      +  E 
Sbjct: 83  AKAMSRA-----GNAFQKQNDLSLAVQWFHRSLSEF 113

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 55.8 bits (135), Expect = 9e-10
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 17/83 (20%)

Query: 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNN-A 346
           + A K+KE GN  +K   ++ A K Y++A      + ++                + N A
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY----------------ITNQA 45

Query: 347 ACKLKLKEYKQAEKLCSKVLELD 369
           A   +  +Y +  +LC K +E+ 
Sbjct: 46  AVYFEKGDYNKCRELCEKAIEVG 68

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 35/137 (25%)

Query: 286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNN 345
           +++   K  E    L + G+Y  A+ +YE     +  + S ++        ++    +  
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSVAEY------TVRSKERI-- 278

Query: 346 AACKLKLKEYKQAEKLCSKVLELD---------------KL--------DIKKALEIDPD 382
             C  K ++  +A ++CS+VL+++                         D + A E + +
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338

Query: 383 NSLEAGWGVRMEYKLLK 399
           +  +   G+    +LLK
Sbjct: 339 DQ-QIREGLEKAQRLLK 354

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 23/156 (14%), Positives = 37/156 (23%), Gaps = 46/156 (29%)

Query: 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK 353
            E G  L  AG+   A  ++  A   +  D                      A   L + 
Sbjct: 7   LELGKKLLAAGQLADALSQFHAA---VDGDPDNYI------------AYYRRATVFLAMG 51

Query: 354 EYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWG 390
           + K A    +KV+ L                        + D KK L+ +P         
Sbjct: 52  KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ--EEKE 109

Query: 391 VRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQA 426
              +     E  R  ++                  A
Sbjct: 110 AESQLVKADEMQRLRSQ------ALDAFDGADYTAA 139

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 46/153 (30%)

Query: 297 GNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYK 356
           G++L K GK + A   +++ +     +    + E Q  K  ++    + A       +Y 
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 357 QAEKLCSKVLELD---------------KL--------DIKKALEIDPDNSLEAGWGVRM 393
            A     K+LE+                K         D+K A ++  DN+ EA      
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT-EA------ 190

Query: 394 EYKLLKEKVREYNKKDVQFYGNIFAKINKLEQA 426
                      + K        ++ ++   E +
Sbjct: 191 -----------FYKI-----STLYYQLGDHELS 207

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 16/137 (11%), Positives = 39/137 (28%), Gaps = 33/137 (24%)

Query: 297 GNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYK 356
             + ++ G +E +     +    +  D           +V K+   + +A   ++   Y 
Sbjct: 195 STLYYQLGDHELSLSEVREC---LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 251

Query: 357 QAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNI 416
            A               +  ++ +P  +                   EY  +  +   + 
Sbjct: 252 DATSKY-----------ESVMKTEPSVA-------------------EYTVRSKERICHC 281

Query: 417 FAKINKLEQAKSASSMA 433
           F+K  K  +A    S  
Sbjct: 282 FSKDEKPVEAIRICSEV 298

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 9e-09
 Identities = 54/395 (13%), Positives = 109/395 (27%), Gaps = 132/395 (33%)

Query: 159 KTVSDITKD---KKVLKKILKEGDGYENQMMVQWFKLHDGT----VFVKKGHDE------ 205
           K V D+ K    K+ +  I+   D     + + W  L         FV++          
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 206 --------EPLFEFKIDEEQVIDGLDRAVKTMKKGEV-----------ALVTIEPE---- 242
                   +P    ++  EQ  D L    +   K  V           AL+ + P     
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 243 ------------------------------Y--AFGSCSSEKELAIVPANSTLFYEVELV 270
                                         +     +C+S + +  +     L Y+++  
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK--LLYQID-- 210

Query: 271 SFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERA--------SKRYEQAVNYIGY 322
                +     N + +I +    + E   L K+  YE          + +   A N    
Sbjct: 211 PNWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL--- 264

Query: 323 DSSFSDEEKQQAKVLKITCNLNNA-------ACKLKLKEYK------QAEKLCSKVLELD 369
                       K+L  T                + L  +       + + L  K L+  
Sbjct: 265 ----------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 370 KLDIKK-ALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKS 428
             D+ +  L  +P               ++ E +R+        + ++    +KL     
Sbjct: 315 PQDLPREVLTTNP-----------RRLSIIAESIRDGLAT-WDNWKHV--NCDKLTTIIE 360

Query: 429 ASSMAKQEPAPM------VLIARHDTSIKLSMIAI 457
            SS+   EPA        + +      I   ++++
Sbjct: 361 -SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 6e-08
 Identities = 61/438 (13%), Positives = 134/438 (30%), Gaps = 121/438 (27%)

Query: 29  NAMLQFDVELLGWTSVKDICKDGGIFKKILVE--GKKWENPKDLDEVFVKYEV-RLEDGT 85
             +L+ + + L  + +K   +   +  ++ +E   + + +     +VF KY V RL+   
Sbjct: 84  EEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDN----QVFAKYNVSRLQ--- 135

Query: 86  LISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDE----D 141
              K                L +A+  ++  + VL+        G  G   +G      D
Sbjct: 136 PYLK----------------LRQALLELRPAKNVLI-------DGVLG---SGKTWVALD 169

Query: 142 AVPSNANLHITLEM---VSWKTVSDITKDKKVLKKILK-----------EGDGYENQMM- 186
                 +  +  +M   + W  + +    + VL+ + K             D   N  + 
Sbjct: 170 VC---LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 187 VQWFKLHDGTVFVKKGH-----------DEEPL--FEF--KI----DEEQVIDGLDRAVK 227
           +   +     +   K +           + +    F    KI      +QV D L  A  
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 228 T---MKKGEVALVTIEPEYAFGSC--SSEKEL-----AIVPANSTLFYEVELVSFIKEKE 277
           T   +    + L   E +           ++L        P   ++  E  +   +   +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-SIRDGLATWD 345

Query: 278 SWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQ-AVNYIGYDSSFSDEEKQQAKV 336
           +W     +K+    +     NVL    +     K +++ +V        F         +
Sbjct: 346 NWKHVNCDKLTTIIESSL--NVL----EPAEYRKMFDRLSV--------FPPSAHIPTIL 391

Query: 337 LKIT-CNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEY 395
           L +   ++                 +      ++KL     +E  P  S  +   + +E 
Sbjct: 392 LSLIWFDV----------IKSDVMVV------VNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 396 KLLKEKVREYNKKDVQFY 413
           K+  E     ++  V  Y
Sbjct: 436 KVKLENEYALHRSIVDHY 453

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 36/146 (24%)

Query: 286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNN 345
           +++   K  E    L + G+Y  A+ +YE     +  + S ++          +      
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSIAE--------YTVRSKERI 301

Query: 346 AACKLKLKEYKQAEKLCSKVLELD---------------KL--------DIKKALEIDPD 382
             C  K ++  +A ++CS+VL+++                         D + A E + +
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 383 NSLEAGWGVRMEYKLLK-EKVREYNK 407
           +  +   G+    +LLK  + R+Y K
Sbjct: 362 DQ-QIREGLEKAQRLLKQSQKRDYYK 386

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 24/167 (14%), Positives = 43/167 (25%), Gaps = 48/167 (28%)

Query: 284 QEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNL 343
            + +    K  E G  L  AG+   A  ++  A   +  D                    
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAA---VDGDPDNYI-------------AY 63

Query: 344 NN-AACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEI 379
              A   L + + K A    +KV++L                        + D KK L+ 
Sbjct: 64  YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123

Query: 380 DPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQA 426
           +P  +       + +     E  R  ++                  A
Sbjct: 124 NPSEN--EEKEAQSQLIKSDEMQRLRSQ------ALNAFGSGDYTAA 162

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 19/164 (11%), Positives = 47/164 (28%), Gaps = 49/164 (29%)

Query: 286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNN 345
           K +   + + +    F +G Y  A    ++    +      ++      + L+       
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKI---LEVCVWDAE-----LRELR------- 183

Query: 346 AACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPD 382
           A C +K  E ++A        +L                          ++++ L++D D
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243

Query: 383 NSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQA 426
           +           YK +K+  +               +  +   A
Sbjct: 244 HKR-----CFAHYKQVKKLNKLIES------AEELIRDGRYTDA 276

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 23/111 (20%)

Query: 297 GNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYK 356
           G++L K GK + A   +++ +     ++   + + Q  K  ++    + A       +Y 
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 357 QAEKLCSKVLELD---------------KL--------DIKKALEIDPDNS 384
            A     K+LE+                K         D+K A ++  DN+
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT 211

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 71  DEVFVKYEVRLEDGTLISKSDG---VEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQY 127
             V + Y+VR EDG L+ +S     +++  G G   + L  A++  + G+K  + V    
Sbjct: 7   LVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND 66

Query: 128 AFG 130
           A+G
Sbjct: 67  AYG 69

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 191 KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFG 246
           +  DG +  +      PL ++      +I GL+ A++  + G+   V +    A+G
Sbjct: 16  RTEDGVLVDE-SPVSAPL-DYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYG 69

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 71  DEVFVKYEVRLEDGTLISKSDG---VEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQY 127
             V + Y+VR EDG L+ +S     +++  G G   + L  A++  + G+K  + V    
Sbjct: 7   LVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND 66

Query: 128 AFG 130
           A+G
Sbjct: 67  AYG 69

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 191 KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFG 246
           +  DG +  +      PL ++      +I GL+ A++  + G+   V +    A+G
Sbjct: 16  RTEDGVLVDE-SPVSAPL-DYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYG 69

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 52.2 bits (126), Expect = 9e-08
 Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 57/174 (32%)

Query: 290 AGKKKEEGNVLFKAGKYERASKRYEQAV----NYIGYDSSFSDEEKQQAKVLKITCNLNN 345
           A K+K EGN  +KA +++ A + Y +A     +                         N 
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYL--------------------NNR 44

Query: 346 AACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPD 382
           AA + +  EY+ A    +  +E                           D+KK +E    
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104

Query: 383 NSLEAGWG-VRMEYKLLKEKVREYNK------KDVQFY---GNIFAKINKLEQA 426
           +  E     +  + +  ++++++         +  +     G  +   +    A
Sbjct: 105 SLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 49/139 (35%)

Query: 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNN-AACKLKL 352
           + EG   F    +  A K Y +    I      +                +N AA   KL
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEM---IKRAPEDAR-------------GYSNRAAALAKL 186

Query: 353 KEYKQAEKLCSKVLELD---------------KL--------DIKKALEIDPDNSLEAGW 389
             + +A   C+K +E D                +         +  A   D + +     
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN----- 241

Query: 390 GVRMEYKLLKEKVREYNKK 408
                    +E  + Y K 
Sbjct: 242 ----NGSSAREIDQLYYKA 256

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 15/88 (17%)

Query: 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNA 346
           ++ A + K + N  FKA  YE A K Y QA+     ++ +                 N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYY---------------GNRS 47

Query: 347 ACKLKLKEYKQAEKLCSKVLELDKLDIK 374
              L+ + Y  A    ++ +ELDK  IK
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIK 75

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 71  DEVFVKYEVRLEDGTLISKSDG----VEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQ 126
             V V + ++L+DGT    +        F +GD      L + +  +K G+K   +++P 
Sbjct: 29  SAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPD 88

Query: 127 YAFG 130
            AFG
Sbjct: 89  AAFG 92

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 191 KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFG 246
           KL DGT      ++ +P   F++ +  + +GL++ +  +K G+    ++EP+ AFG
Sbjct: 38  KLDDGTTAESTRNNGKPA-LFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFG 92

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 33/202 (16%), Positives = 66/202 (32%), Gaps = 40/202 (19%)

Query: 281 MNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKIT 340
           ++  ++   A + K  GN  F A  +  A K Y+ A   I  D +               
Sbjct: 16  LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYA---IELDPNEPV------------ 60

Query: 341 CNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIK----------------------KALE 378
              N +AC +   + ++  +  +K LE+     K                        L 
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120

Query: 379 IDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQ--E 436
           ++ D    A     +E  L K+ ++  N+   +  G     +       S   +     E
Sbjct: 121 LNGDFD-GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179

Query: 437 PAPMVLIARHDTSIKLSMIAIE 458
            + +   + +DT+  L   A++
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQ 201

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 36/171 (21%)

Query: 295 EEGNVLFKAGKYERASKRYEQAVNY-IGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK 353
           ++ +   +AG+  +A   + Q +   I     +      +   +        A    K +
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 354 EYKQAEKLCSKVLELDKLDI-----------------------KKALEIDPDNS---LEA 387
            Y +A     ++L+    ++                       +K L+++ DN    +  
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 388 GWGVRMEYKLLKEKVREYNK------KDVQFY---GNIFAKINKLEQAKSA 429
           G    +  +  K+K+    K      K        G       + E+A+++
Sbjct: 129 GNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNS 179

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 191 KLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFG 246
           +    ++ +     +EPL EF I   Q+I GL++AV   + GE   V I PE A+G
Sbjct: 20  REQGSSIVLDSNISKEPL-EFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYG 74

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 73  VFVKYEVRLEDGT-LISKSDG---VEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYA 128
             ++YEVR +  + ++  +     +EF +G     A L KAV   + GE   + + P+ A
Sbjct: 13  ALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEA 72

Query: 129 FG 130
           +G
Sbjct: 73  YG 74

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 194 DGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFG 246
           +G V      D+  L  +      +I GL+ A++  ++GE     +  E A+G
Sbjct: 18  EGEVL-----DQGEL-SYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYG 64

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 11/60 (18%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 71  DEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFG 130
             V ++Y +++ +G ++ + + + +  G       L +A++  ++GE     V  + A+G
Sbjct: 7   KVVTIRYTLQV-EGEVLDQGE-LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYG 64

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 17/77 (22%)

Query: 71  DEVFVKYEVRLEDGTLISKSDG-----------------VEFTVGDGYFCAALAKAVKTM 113
            ++ V Y  +LE G +   S                   +EF VG+G       +AV  M
Sbjct: 6   VKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDM 65

Query: 114 KKGEKVLLTVKPQYAFG 130
           + G++  + +  + A+G
Sbjct: 66  EVGDEKTVKIPAEKAYG 82

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 191 KLHDGTVF-------------VKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALV 237
           KL  G VF                  + EPL EF + E Q+I G + AV  M+ G+   V
Sbjct: 15  KLESGDVFDTSIEEVAKEAGIYAPDREYEPL-EFVVGEGQLIQGFEEAVLDMEVGDEKTV 73

Query: 238 TIEPEYAFG 246
            I  E A+G
Sbjct: 74  KIPAEKAYG 82

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 42.6 bits (99), Expect = 6e-05
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 281 MNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKIT 340
           M   +++  A     +      AG+Y+ A+    +A   +    +   EE          
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAF 58

Query: 341 CNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDN 383
           C+   A     L+ + +A     K L        +  E++ D 
Sbjct: 59  CHAGLAEALAGLRSFDEALHSADKALHY----FNRRGELNQDE 97

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 27/130 (20%)

Query: 297 GNVLFKAGKYERASKRYEQAV------NYIGYDSSFSDEEKQQAKVLKITCNLNNAACKL 350
           G + ++  KY+ A K  ++A+        I Y       +    +VL      N A    
Sbjct: 78  GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL-----YNIAFMYA 132

Query: 351 KLKEYKQAEKLCSKVLELD------KLD-----IKKALEIDPDNSLEAGWGVRMEYKLLK 399
           K +E+K+AE+  +    +       K+D     + K    +P   +  G      ++  +
Sbjct: 133 KKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPV-VIPVG----RLFRPNE 187

Query: 400 EKVREYNKKD 409
            +V +  KKD
Sbjct: 188 RQVAQLAKKD 197

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 58/159 (36%)

Query: 285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAV----NYIGYDSSFSDEEKQQAKVLKIT 340
           EK + A   K++GN  F+  KY+ A K Y  A+    + + Y                  
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFY------------------ 42

Query: 341 CNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKE 400
              N +AC + + + K+  +              KALE+ PD S +              
Sbjct: 43  --SNLSACYVSVGDLKKVVE-----------MSTKALELKPDYS-KV------------- 75

Query: 401 KVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQEPAP 439
                 ++      +    + K   A    S+       
Sbjct: 76  ----LLRR-----ASANEGLGKFADAMFDLSVLSLNGDF 105

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 23/200 (11%), Positives = 50/200 (25%), Gaps = 52/200 (26%)

Query: 265 YEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDS 324
           +      F ++ +  + + + K + A   +  G   F       A +  ++A+       
Sbjct: 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI------- 264

Query: 325 SFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--------------- 369
               E   +         +  A       +  +      K L+LD               
Sbjct: 265 ----ELFPRVNSY-----IYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315

Query: 370 --------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK---------EKVREYNKKDVQF 412
                     D  KA E+DP+N       +                  + +    +  + 
Sbjct: 316 ILQNYDQAGKDFDKAKELDPENI-FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV 374

Query: 413 Y---GNIFAKINKLEQAKSA 429
                 I    N  ++A   
Sbjct: 375 PNFFAEILTDKNDFDKALKQ 394

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 14/66 (21%)

Query: 194 DGTVF-------------VKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIE 240
           DG +F                     P+      E QV+ GLD A+  M  GE   V + 
Sbjct: 17  DGKLFDTTNEELAKKEGIYNPAMIYGPV-AIFAGEGQVLPGLDEAILEMDVGEEREVVLP 75

Query: 241 PEYAFG 246
           PE AFG
Sbjct: 76  PEKAFG 81

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 20/169 (11%), Positives = 52/169 (30%), Gaps = 53/169 (31%)

Query: 297 GNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYK 356
            +  ++AG +E A +   Q               +Q+     +   L  ++   + +   
Sbjct: 6   AHREYQAGDFEAAERHCMQLW-------------RQEPDNTGVLLLL--SSIHFQCRRLD 50

Query: 357 QAEKLCSKVLELD------------------KLD-----IKKALEIDPDNSLEAGWG--- 390
           ++    +  ++ +                  +L       + AL + PD   +  +    
Sbjct: 51  RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI-DG-YINLA 108

Query: 391 -VRMEYKLLKEKVREYNK------KDVQFY---GNIFAKINKLEQAKSA 429
              +    ++  V+ Y                 GN+   + +LE+AK+ 
Sbjct: 109 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 157

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 53/169 (31%)

Query: 297 GNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYK 356
            N+L    + ERA   Y++A   +  DSS +                 N    +  + YK
Sbjct: 64  ANLLSSVNELERALAFYDKA---LELDSSAAT----------AYYGAGNV--YVVKEMYK 108

Query: 357 QAEKLCSKVLELD------------------KLD-----IKKALEIDPDNSLEA----GW 389
           +A+ +  K L                     +       +++A+E++ +++ EA    G 
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT-EARFQFGM 167

Query: 390 GVRMEYKLLKEKVREYNK------KDVQFY---GNIFAKINKLEQAKSA 429
                  +L E + ++             +   G  +A     E+A   
Sbjct: 168 -CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 41/138 (29%)

Query: 297 GNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAA-CKLKLKEY 355
           G  L++  +YE A +R  +A     Y          +           N     L++K+ 
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERS------RV--------FENLGLVSLQMKKP 157

Query: 356 KQAEKLCSKVLELD------------------KLD-----IKKALEIDPDNSLEAGW-GV 391
            QA++   K L L+                  +            +    N+  +   G+
Sbjct: 158 AQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA-RSLLLGI 216

Query: 392 RMEYKL-LKEKVREYNKK 408
           R+      ++    Y  +
Sbjct: 217 RLAKVFEDRDTAASYGLQ 234

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 40/137 (29%)

Query: 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE 354
             G   ++AGK++ A K ++       YD+ +                L   AC+  L  
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARY---------------FLGLGACRQSLGL 67

Query: 355 YKQAEKLCSKVLELDKLD-----------------------IKKALEIDPDNSLEAGWGV 391
           Y+QA +  S    +D  +                          A  +            
Sbjct: 68  YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127

Query: 392 RMEYKLLKEKVREYNKK 408
           R     + E V     +
Sbjct: 128 RAG--AMLEAVTARKDR 142

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 297 GNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYK 356
           G V F+ G+++ A K +  A+  I    +    +K +        N N      KLK+Y 
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP-----LLN-NLGHVCRKLKKYA 253

Query: 357 QAEKLCSKVLELD------------------KLD-----IKKALEIDPDNS 384
           +A     + L L                     +        AL +  D++
Sbjct: 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 27/136 (19%)

Query: 297 GNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYK 356
            ++   A +YE A   +++  +        +   KQ      +     N     ++K   
Sbjct: 341 ASLHALADQYEEAEYYFQKEFS-----KELTPVAKQL-----LHLRYGN-FQLYQMKCED 389

Query: 357 QAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFY--- 413
           +A                + ++I+  +       ++ + + + +     N  D +     
Sbjct: 390 KAIHHF-----------IEGVKINQKSR--EKEKMKDKLQKIAKMRLSKNGADSEALHVL 436

Query: 414 GNIFAKINKLEQAKSA 429
             +     K++QA   
Sbjct: 437 AFLQELNEKMQQADED 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	469
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.96
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.95
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.9
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.86
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.86
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.86
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.85
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.84
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.84
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.84
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.84
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.84
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.84
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.83
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.83
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.83
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.82
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.82
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.82
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.82
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.82
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.81
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.81
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.81
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.81
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.8
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.8
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.8
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.79
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.79
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.79
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.78
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.77
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.77
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.77
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.77
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.76
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.76
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.75
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.75
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.75
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.75
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.73
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.73
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.73
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.71
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.7
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.7
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.7
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.67
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.66
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.62
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.55
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.54
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.5
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.5
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.49
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.48
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.48
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.46
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.46
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.41
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.39
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.36
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.35
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.35
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.3
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.24
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.22
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.21
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.2
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.2
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.2
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.17
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.17
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.1
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.1
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.94
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.9
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.88
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.85
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.84
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.78
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.76
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.69
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.67
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.63
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.62
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.61
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.61
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.59
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.58
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	98.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.58
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.51
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.51
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.5
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.49
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.48
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.48
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.46
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.43
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.42
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.41
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.41
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.39
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.38
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.37
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.35
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.34
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.34
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.27
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.25
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.23
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.23
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.22
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.2
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.19
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.19
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.18
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.16
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.12
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.11
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.1
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.1
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.08
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.04
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.03
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.03
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.02
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.02
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.01
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.01
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.98
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.98
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.97
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.96
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.95
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.95
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.91
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.9
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.9
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.9
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.89
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.88
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.88
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.88
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.87
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.87
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.87
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.86
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.85
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.83
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.81
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.79
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.79
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.79
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.79
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.77
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.77
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.77
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.76
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.72
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.72
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.72
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.71
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.71
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.7
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.7
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.69
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.68
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.68
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.67
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.66
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.66
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.65
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.65
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.65
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.62
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.62
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.61
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.61
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.6
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.59
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.59
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.58
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.57
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.57
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.56
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.55
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.54
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.51
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.5
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.5
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.48
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.45
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.44
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.43
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.43
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.42
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.4
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.39
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.39
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.39
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.38
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.37
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.36
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.34
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.32
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.27
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.26
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.23
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.22
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.17
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.16
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.15
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.15
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.13
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.02
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.02
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.88
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.7
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.66
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.65
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.6
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.53
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.52
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.49
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.48
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.37
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.23
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	96.17
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.1
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.07
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.91
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	95.86
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	95.86
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.85
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	95.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	95.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.68
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.68
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	95.64
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.45
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	95.34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.31
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.09
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.07
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	94.95
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	94.87
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	94.83
1klx_A	138	Cysteine rich protein B; structural genomics, heli	94.74
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	94.7
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.29
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.94
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	93.56
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	93.53
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	93.07
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	92.99
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.06
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	91.95
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	91.39
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	91.2
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	91.19
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	91.04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	90.97
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	90.44
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	90.37
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	90.21
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	89.68
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	89.11
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	89.08
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	88.85
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	87.05
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	87.0
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	86.69
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	86.66
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	86.48
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	86.06
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	85.45
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	84.62
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	84.55
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	83.12
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	82.9
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	82.36

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=2.8e-52  Score=432.47  Aligned_cols=362  Identities=34%  Similarity=0.602  Sum_probs=304.3

Q ss_pred             cccc--cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcE
Q 036950           45 KDIC--KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEK  118 (469)
Q Consensus        45 ~dv~--~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~  118 (469)
                      .|++  +++|+.++++.+|+|...|..||.|+|||++++.||++|++|    .|+.|.+|.+++++||+++|.+|++|++
T Consensus        23 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~  102 (457)
T 1kt0_A           23 EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEI  102 (457)
T ss_dssp             ----------CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCE
T ss_pred             ccccCCCCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCE
Confidence            4555  789999999999999555999999999999998899999987    6899999999999999999999999999


Q ss_pred             EEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccccccccchhhhhhhhhcCCCCCCCc-----eEE-EEEe
Q 036950          119 VLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYENQM-----MVQ-WFKL  192 (469)
Q Consensus       119 ~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~dv~~d~~l~k~il~~G~g~~~p~-----~V~-~~~l  192 (469)
                      +.|.|||+++||..+.+     +.||++++++|+|+|++|.. .++..+++++++++++|.|...|.     +|+ .|++
T Consensus       103 ~~~~i~~~~~yg~~g~~-----~~i~~~~~l~~~v~l~~~~~-~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~  176 (457)
T 1kt0_A          103 CHLLCKPEYAYGSAGSL-----PKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC  176 (457)
T ss_dssp             EEEEECGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-EETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE
T ss_pred             EEEEEChHHhccccCCC-----CCCCCCCcEEEEEeeceeec-ccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe
Confidence            99999999999988764     56999999999999999977 467788899999999999987777     455 8888


Q ss_pred             cCCcEEEecCCCCCCcEEEEcCCC---ccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEEE
Q 036950          193 HDGTVFVKKGHDEEPLFEFKIDEE---QVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVEL  269 (469)
Q Consensus       193 ~~g~~~d~~~~~~~~p~~~~lG~~---~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel  269 (469)
                       +|++||++      +++|.+|+|   .+++||+.||..|++||++.|.++|.++|+..|...  ..||+++.+.|.+.+
T Consensus       177 -~g~~f~~~------~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~--~~ip~~~~l~y~~~l  247 (457)
T 1kt0_A          177 -GGRMFDCR------DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPK--FGIEPNAELIYEVTL  247 (457)
T ss_dssp             -TTEEEEEE------EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGG--GTBCTTCCEEEEEEE
T ss_pred             -CCeEEecC------ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcc--cCCCCCCEEEEEhhh
Confidence             89999974      699999977   589999999999999999999999999999988763  469999999999999


Q ss_pred             eeeeecccccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHH
Q 036950          270 VSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACK  349 (469)
Q Consensus       270 ~~~~~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~  349 (469)
                      .++.+....|.+..+++...+..+++.|+.+|+.|+|.+|+..|++|+.+.+....+.+++..+...+...+|+|+|.||
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998887888888889999999999999999


Q ss_pred             HHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          350 LKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       350 ~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                      +++++|++|+.+|++||+++                       +.+|++|++++|++.     .+...+..+..++.++.
T Consensus       328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~-----~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK-----AARLQISMCQKKAKEHN  402 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHH
Confidence            99999999999999999998                       778999999999999     99999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhchhh
Q 036950          407 KKDVQFYGNIFAKINKLEQA  426 (469)
Q Consensus       407 ~~e~~~~~~mf~~~~~~~~~  426 (469)
                      ++++++|++||+++...+..
T Consensus       403 ~a~~~~~~~~f~k~~~~d~~  422 (457)
T 1kt0_A          403 ERDRRIYANMFKKFAEQDAK  422 (457)
T ss_dssp             HHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHhhhhhcccc
Confidence            99999999999998876654

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=2.2e-51  Score=410.44  Aligned_cols=273  Identities=76%  Similarity=1.154  Sum_probs=213.5

Q ss_pred             CCCCcEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEeecceeeccccccCCceEEEEEecCCccCCCCCCCEEEEEEEEE
Q 036950            1 MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVR   80 (469)
Q Consensus         1 m~~Ge~~~~~~~p~~~yg~~g~~~~ip~~~~l~f~v~l~~~~~~~dv~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~   80 (469)
                      |++||++.|+|||++|||+.|+++.||+|++|+|+|+|++|..+.|+..|+++.++++.+|.|+.+|..||.|.+||+++
T Consensus        77 m~~Ge~~~~~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~  156 (356)
T 3jxv_A           77 MKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEAR  156 (356)
T ss_dssp             -----------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEE
T ss_pred             CCCCCEEEEEEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcEEeccccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeecc
Q 036950           81 LEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKT  160 (469)
Q Consensus        81 ~~~G~~~~~t~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  160 (469)
                      +.||++|+++.++.|.+|.+++++||+.+|.+|++||++.++|||+++||+.+.+...+...||++++|+|+|+|++|..
T Consensus       157 l~dgt~~~~~~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~  236 (356)
T 3jxv_A          157 LEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKT  236 (356)
T ss_dssp             ETTSCEEEEEEEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEEC
T ss_pred             ECCCCEEeccCCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEec
Confidence            99999999988999999999999999999999999999999999999999998875544457999999999999999999


Q ss_pred             ccccccchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcE
Q 036950          161 VSDITKDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV  234 (469)
Q Consensus       161 ~~dv~~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~  234 (469)
                      +.++..+.+++++++++|.|...|.     +|+ .+++.||++||++.+.++.|++|.+|.+++|+||+.+|.+|++||+
T Consensus       237 v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~fd~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~  316 (356)
T 3jxv_A          237 VTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEV  316 (356)
T ss_dssp             EEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEEEEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCE
T ss_pred             ccccccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEEeeccccCCcCEEEEECCCccchHHHHHHhCCCCCCE
Confidence            8999999999999999999976666     555 8999999999998556689999999999999999999999999999


Q ss_pred             EEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeeee
Q 036950          235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIK  274 (469)
Q Consensus       235 ~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~  274 (469)
                      +.|+|||.+|||+.+... ...||++++|+|+|+|++|.+
T Consensus       317 ~~v~ip~~~aYG~~~~~~-~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          317 ALVTIPPEYAYGSTESKQ-DAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             EEEEECGGGTTTTSCEES-SSEECTTCCEEEEEEEEEEEC
T ss_pred             EEEEEChHHccCCCCcCC-CCcCCcCCeEEEEEEEEEEEc
Confidence            999999999999987532 256999999999999999874

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=2.6e-38  Score=304.19  Aligned_cols=226  Identities=39%  Similarity=0.621  Sum_probs=197.4

Q ss_pred             cceeeccccc--cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhc
Q 036950           39 LGWTSVKDIC--KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKT  112 (469)
Q Consensus        39 ~~~~~~~dv~--~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~g  112 (469)
                      ++|.. .|++  .++|+.|+++++|+|..+|..||.|++||++++.||++|+++    .|+.|.+|.+++++||+++|.+
T Consensus        38 ~~~~~-~di~~~~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~g  116 (280)
T 1q1c_A           38 LPMEG-VDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIAT  116 (280)
T ss_dssp             ---CC-EECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTT
T ss_pred             cCccc-cccccCCCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhc
Confidence            45544 5777  789999999999999656999999999999999899999987    5899999999999999999999


Q ss_pred             ccCCcEEEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccccccc--cchhhhhhhhhcCCCCCCCc---e-
Q 036950          113 MKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDIT--KDKKVLKKILKEGDGYENQM---M-  186 (469)
Q Consensus       113 mk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~dv~--~d~~l~k~il~~G~g~~~p~---~-  186 (469)
                      |++|+++.|.|||++|||..+.+     +.||++++|+|+|+|+++.. .++.  .++++.++++++|+|...|.   + 
T Consensus       117 m~~Ge~~~v~ipp~~aYG~~g~~-----~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V  190 (280)
T 1q1c_A          117 MKVGEVCHITCKPEYAYGSAGSP-----PKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIV  190 (280)
T ss_dssp             CCTTCEEEEEECGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCCCCTTCEE
T ss_pred             CCCCCEEEEEECcHHhCCCcCcc-----CCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccccccCCceE
Confidence            99999999999999999998764     56999999999999999976 4555  67889999999999986555   4 


Q ss_pred             -EE-EEEecCCcEEEecCCCCCCcEEEEcCCCc---cchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCc
Q 036950          187 -VQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQ---VIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANS  261 (469)
Q Consensus       187 -V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~---v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~  261 (469)
                       |+ .+++ +|++||+      .|+.|.+|.+.   +|+||+.+|.+|++||++.|+|||+++||+.+.+.  ..||+|+
T Consensus       191 ~i~y~g~~-dG~~fd~------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~--~~IP~~~  261 (280)
T 1q1c_A          191 EVALEGYY-KDKLFDQ------RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNA  261 (280)
T ss_dssp             EEEEEEEE-TTEEEEE------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGG--GTBCTTC
T ss_pred             EEEEEEEe-CCEEEec------CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCcc--CccCCCC
Confidence             44 7777 8999997      38999999997   59999999999999999999999999999987642  2599999


Q ss_pred             eEEEEEEEeeeeecccccC
Q 036950          262 TLFYEVELVSFIKEKESWD  280 (469)
Q Consensus       262 ~l~f~vel~~~~~~~~~~~  280 (469)
                      +++|+|+|++|.+.++.|+
T Consensus       262 ~l~f~V~L~~i~~~~~~W~  280 (280)
T 1q1c_A          262 ELKYELHLKSFEKAKESWE  280 (280)
T ss_dssp             CEEEEEEEEEEECCCC---
T ss_pred             eEEEEEEEEEEeCCCCCCC
Confidence            9999999999999998885

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=1.4e-38  Score=317.74  Aligned_cols=221  Identities=40%  Similarity=0.679  Sum_probs=101.4

Q ss_pred             ccccCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEE
Q 036950           46 DICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLL  121 (469)
Q Consensus        46 dv~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~  121 (469)
                      ...+++|+.|+++++|+|+..|..||.|.+||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|+++.|
T Consensus         6 ~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~Ge~~~~   85 (356)
T 3jxv_A            6 NEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALF   85 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCCCEEEE
Confidence            445688999999999999778999999999999998899999988    6899999999999999999999999999999


Q ss_pred             EEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccccccccchhhhhhhhhcCCCCCCCc-----eEE-EEEecCC
Q 036950          122 TVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDG  195 (469)
Q Consensus       122 ~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~dv~~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g  195 (469)
                      .|||++|||+.+.+     +.||++++|+|+|+|++|..+.|+..|.++.++++++|.|+..|.     +|+ .+++.||
T Consensus        86 ~ip~~~aYG~~g~~-----~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dg  160 (356)
T 3jxv_A           86 TIPPELAYGESGSP-----PTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDG  160 (356)
T ss_dssp             -------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTS
T ss_pred             EEChHHhCCCCCCC-----CCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCC
Confidence            99999999998874     569999999999999999998999999999999999999988887     566 9999999


Q ss_pred             cEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCccc--ccCCCCCceEEEEEEEeeee
Q 036950          196 TVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKE--LAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       196 ~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~--~~~ip~~~~l~f~vel~~~~  273 (469)
                      ++|+++     .++.|.+|++.+++||+.+|.+|++||+++|+|||+++||+.|.+..  ...||++++|+|+|+|+++.
T Consensus       161 t~~~~~-----~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~  235 (356)
T 3jxv_A          161 TVVSKS-----EGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWK  235 (356)
T ss_dssp             CEEEEE-----EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEE
T ss_pred             CEEecc-----CCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEe
Confidence            999986     38999999999999999999999999999999999999999887631  13599999999999999997


Q ss_pred             ecc
Q 036950          274 KEK  276 (469)
Q Consensus       274 ~~~  276 (469)
                      ...
T Consensus       236 ~v~  238 (356)
T 3jxv_A          236 TVT  238 (356)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            533

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-33  Score=280.99  Aligned_cols=248  Identities=34%  Similarity=0.529  Sum_probs=180.9

Q ss_pred             chhhhhhhhhcCCCCCCCc-----eEE-EEEecC-CcEEEecCCCCCCcEEEEcCCC-ccchhHHHHHhccccCcEEEEE
Q 036950          167 DKKVLKKILKEGDGYENQM-----MVQ-WFKLHD-GTVFVKKGHDEEPLFEFKIDEE-QVIDGLDRAVKTMKKGEVALVT  238 (469)
Q Consensus       167 d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~-g~~~d~~~~~~~~p~~~~lG~~-~v~~gle~~L~~m~~Ge~~~~~  238 (469)
                      ++++.++++++|.|. .|.     +|+ .|++++ |++||++ +.++.|++|.+|.+ .+|+||+.+|.+|++||++.|+
T Consensus        48 ~~~~~~~~~~~g~g~-~~~~gd~v~v~y~g~~~~~g~~fd~~-~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~  125 (338)
T 2if4_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDT-WHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVH  125 (338)
T ss_dssp             ETTEEEEEEECCBSC-CCCTTCEEEEEEEEEETTTCCCCEEH-HHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEE
T ss_pred             CCCeEEEEEeCCCCC-CCCCCCEEEEEEEEEEcCCCcEeecc-cCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEE
Confidence            568999999999997 444     455 888885 9999998 56678999999999 8999999999999999999999


Q ss_pred             EcCCCccCCCCCcccccCCCCCceEEEEEEEeeeeecc---cccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHH
Q 036950          239 IEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEK---ESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQ  315 (469)
Q Consensus       239 i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~~---~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~  315 (469)
                      |||.++||..+... .+.||++++++|.|+|+++...+   ..|.++.+++++.+..+++.|+.+|+.|+|.+|+..|++
T Consensus       126 i~~~~~yg~~~~~~-~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~  204 (338)
T 2if4_A          126 VGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEM  204 (338)
T ss_dssp             ECGGGSSCSSCCCS-SSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHH
T ss_pred             ECHHHhcCCCCCCC-CCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            99999999987632 24699999999999999998644   578899999999999999999999999999999999999


Q ss_pred             HHHHhcCCC--CCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----------------------H
Q 036950          316 AVNYIGYDS--SFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------K  370 (469)
Q Consensus       316 al~~~~~~~--~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----------------------~  370 (469)
                      |+.+.+...  ............+...+|+|+|.||+++++|++|+.+|++||+++                       +
T Consensus       205 Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~  284 (338)
T 2if4_A          205 AIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSAR  284 (338)
T ss_dssp             HHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            999876532  111223344556666799999999999999999999999999998                       7


Q ss_pred             HHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 036950          371 LDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINK  422 (469)
Q Consensus       371 ~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~  422 (469)
                      .+|+++++++|++.     .++..|..+..+.+...+++++.|++||+....
T Consensus       285 ~~l~~al~l~p~~~-----~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~  331 (338)
T 2if4_A          285 DDFRKAQKYAPDDK-----AIRRELRALAEQEKALYQKQKEMYKGIFKGKDE  331 (338)
T ss_dssp             HHHHHTTC--------------------------------------------
T ss_pred             HHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            78999999999999     999999999888888999999999999987554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=100.00  E-value=3.3e-31  Score=263.29  Aligned_cols=252  Identities=37%  Similarity=0.666  Sum_probs=229.7

Q ss_pred             cccccchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCc---cchhHHHHHhccccC
Q 036950          162 SDITKDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQ---VIDGLDRAVKTMKKG  232 (469)
Q Consensus       162 ~dv~~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~---v~~gle~~L~~m~~G  232 (469)
                      .+++.++++.++|+++|.|...|.     +|+ .|++ +|++||++      |++|.+|.|.   +++||+.||..|++|
T Consensus        19 ~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~------~~~f~lG~g~~~~~~~~~e~al~~~~~G   91 (336)
T 1p5q_A           19 SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR------ELRFEIGEGENLDLPYGLERAIQRMEKG   91 (336)
T ss_dssp             ---CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE------EEEEETTCGGGGTCCHHHHHHHTTCCTT
T ss_pred             eeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC------CeEEEeCCCCccccchHHHHHHhcCCCC
Confidence            456678999999999999986676     455 8888 99999985      8999999986   599999999999999


Q ss_pred             cEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHH
Q 036950          233 EVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKR  312 (469)
Q Consensus       233 e~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~  312 (469)
                      |++.|.++|.++||..|...  ..||+++.+.|+++|.++.+....|.+..+.....+..+...|+.+|+.|+|.+|+..
T Consensus        92 e~~~l~i~p~~ayg~~g~~~--~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~  169 (336)
T 1p5q_A           92 EHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQ  169 (336)
T ss_dssp             CEEEEEECTTTTTTTTCBGG--GTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CeEEEEECCccccCcCCCCc--cCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999988753  3599999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----------------------
Q 036950          313 YEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------  369 (469)
Q Consensus       313 Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----------------------  369 (469)
                      |++|+.+.+.......+.......+...+|+|+|.||+++++|++|+.+|++||+++                       
T Consensus       170 y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  249 (336)
T 1p5q_A          170 YKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELA  249 (336)
T ss_dssp             HHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            999999999887777788888899999999999999999999999999999999998                       


Q ss_pred             HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhh
Q 036950          370 KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAK  427 (469)
Q Consensus       370 ~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~~~~~~  427 (469)
                      +.+|++|++++|++.     .+...+..+...+.++.+.++++|++||+++....+.+
T Consensus       250 ~~~~~~al~l~P~~~-----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  302 (336)
T 1p5q_A          250 RADFQKVLQLYPNNK-----AAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKA  302 (336)
T ss_dssp             HHHHHHHHHHCSSCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            678999999999999     99999999999999999999999999999988765543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.96  E-value=1.9e-27  Score=246.05  Aligned_cols=276  Identities=26%  Similarity=0.414  Sum_probs=213.2

Q ss_pred             CCCCcEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEeecceeeccccccCCceEEEEEecCCccCCCCCCCEEEEEEEEE
Q 036950            1 MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVR   80 (469)
Q Consensus         1 m~~Ge~~~~~~~p~~~yg~~g~~~~ip~~~~l~f~v~l~~~~~~~dv~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~   80 (469)
                      |++||++.|+|||++|||..|+|+.||+|++++|+|++++|.. .++..|++++++++..|.|+.+|..||.|++||+++
T Consensus        97 m~~Ge~~~~~i~~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~-~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~  175 (457)
T 1kt0_A           97 MKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGR  175 (457)
T ss_dssp             CCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-EETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEE
T ss_pred             CCCCCEEEEEEChHHhccccCCCCCCCCCCcEEEEEeeceeec-ccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEE
Confidence            9999999999999999999999999999999999999999987 477789999999999999988999999999999999


Q ss_pred             ecCCcEEeccccEEEEECCCc---cchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeee
Q 036950           81 LEDGTLISKSDGVEFTVGDGY---FCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVS  157 (469)
Q Consensus        81 ~~~G~~~~~t~~~~~~ig~~~---~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~  157 (469)
                      + +|++|++ +++.|.+|.|.   ++++|+.|+..|+.|+++.+.++|.++|+..+...    ..||+++.+.|.+.+.+
T Consensus       176 ~-~g~~f~~-~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~----~~ip~~~~l~y~~~l~~  249 (457)
T 1kt0_A          176 C-GGRMFDC-RDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPK----FGIEPNAELIYEVTLKS  249 (457)
T ss_dssp             E-TTEEEEE-EEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGG----GTBCTTCCEEEEEEEEE
T ss_pred             e-CCeEEec-CceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcc----cCCCCCCEEEEEhhhhh
Confidence            8 8999997 57999999774   89999999999999999999999999999988642    34889999999999998


Q ss_pred             eccccccccch-----hhhhhhhhcCCCCCCCceEEEEEecCCcEEEecCCCCCCcEEEEcCC-CccchhHHHHHhcccc
Q 036950          158 WKTVSDITKDK-----KVLKKILKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDE-EQVIDGLDRAVKTMKK  231 (469)
Q Consensus       158 ~~~~~dv~~d~-----~l~k~il~~G~g~~~p~~V~~~~l~~g~~~d~~~~~~~~p~~~~lG~-~~v~~gle~~L~~m~~  231 (469)
                      +....+...-.     .........|                 ..+.            ..|+ ...+.-++.+|...  
T Consensus       250 ~~~A~~~~~~~~~~~~~~a~~~~~~G-----------------~~~~------------~~g~~~~A~~~y~~Al~~~--  298 (457)
T 1kt0_A          250 FEKAKESWEMDTKEKLEQAAIVKEKG-----------------TVYF------------KGGKYMQAVIQYGKIVSWL--  298 (457)
T ss_dssp             EECCCCGGGSCHHHHHHHHHHHHHHH-----------------HHHH------------HTTCHHHHHHHHHHHHHHH--
T ss_pred             cccCcchhhcCHHHHHHHHHHHHHHH-----------------HHHH------------hCCCHHHHHHHHHHHHHHh--
Confidence            86644321100     0000000111                 0000            0111 03344445555321  


Q ss_pred             CcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHH
Q 036950          232 GEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASK  311 (469)
Q Consensus       232 Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~  311 (469)
                               |..                 ..         +.  .+.   ..+..-..+..+.+.|..+++.++|.+|+.
T Consensus       299 ---------p~~-----------------~~---------~~--~~~---~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  338 (457)
T 1kt0_A          299 ---------EME-----------------YG---------LS--EKE---SKASESFLLAAFLNLAMCYLKLREYTKAVE  338 (457)
T ss_dssp             ---------TTC-----------------CS---------CC--HHH---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ---------ccc-----------------cc---------CC--hHH---HHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence                     110                 00         00  000   001122345667799999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          312 RYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       312 ~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .|++||.+.+..               ..+|+|+|.||+++++|++|+.++++||+++
T Consensus       339 ~~~~al~~~p~~---------------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          339 CCDKALGLDSAN---------------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             HHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCcc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            999999987765               6789999999999999999999999999998

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.95  E-value=6.5e-28  Score=231.74  Aligned_cols=155  Identities=37%  Similarity=0.677  Sum_probs=142.7

Q ss_pred             CCCCcEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEeecceeeccccc--cCCceEEEEEecCCccCCCCCCCEEEEEEE
Q 036950            1 MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDIC--KDGGIFKKILVEGKKWENPKDLDEVFVKYE   78 (469)
Q Consensus         1 m~~Ge~~~~~~~p~~~yg~~g~~~~ip~~~~l~f~v~l~~~~~~~dv~--~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~   78 (469)
                      |++||++.|+|||++|||+.|+++.||+|++|+|+|+++++.. .++.  .|+++.++++++|+|...|+.||.|++||+
T Consensus       117 m~~Ge~~~v~ipp~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~  195 (280)
T 1q1c_A          117 MKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALE  195 (280)
T ss_dssp             CCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEE
T ss_pred             CCCCCEEEEEECcHHhCCCcCccCCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccccccCCceEEEEEE
Confidence            8999999999999999999999999999999999999999986 5666  799999999999999667999999999999


Q ss_pred             EEecCCcEEeccccEEEEECCCc---cchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEee
Q 036950           79 VRLEDGTLISKSDGVEFTVGDGY---FCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEM  155 (469)
Q Consensus        79 ~~~~~G~~~~~t~~~~~~ig~~~---~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l  155 (469)
                      +++ +|++|++ +|+.|.+|.++   +++||+++|.+|++|+++.|.|||+++||..+.+.    ..||+|++++|+|+|
T Consensus       196 g~~-dG~~fd~-~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~----~~IP~~~~l~f~V~L  269 (280)
T 1q1c_A          196 GYY-KDKLFDQ-RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK----FQIPPNAELKYELHL  269 (280)
T ss_dssp             EEE-TTEEEEE-EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGG----GTBCTTCCEEEEEEE
T ss_pred             EEe-CCEEEec-CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCcc----CccCCCCeEEEEEEE
Confidence            998 9999997 69999999987   59999999999999999999999999999887531    249999999999999


Q ss_pred             eeecccc
Q 036950          156 VSWKTVS  162 (469)
Q Consensus       156 ~~~~~~~  162 (469)
                      +++....
T Consensus       270 ~~i~~~~  276 (280)
T 1q1c_A          270 KSFEKAK  276 (280)
T ss_dssp             EEEECCC
T ss_pred             EEEeCCC
Confidence            9997654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.90  E-value=5.7e-23  Score=204.04  Aligned_cols=238  Identities=19%  Similarity=0.281  Sum_probs=165.2

Q ss_pred             cCCceEEEEEecCCccCCCCCCCEEEEEEEEEec-CCcEEecc----ccEEEEECCC-ccchhHHHHHhcccCCcEEEEE
Q 036950           49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLE-DGTLISKS----DGVEFTVGDG-YFCAALAKAVKTMKKGEKVLLT  122 (469)
Q Consensus        49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~-~G~~~~~t----~~~~~~ig~~-~~~~gle~aL~gmk~Ge~~~~~  122 (469)
                      .++|+.++++.+|+| ..|..||.|+|||++++. +|++|+++    .|+.|.+|.+ ++++||+++|.+|++||++.|.
T Consensus        47 ~~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~  125 (338)
T 2if4_A           47 LDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVH  125 (338)
T ss_dssp             EETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEE
T ss_pred             CCCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEE
Confidence            468999999999999 699999999999999987 49999987    6999999999 8999999999999999999999


Q ss_pred             EcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccccccccchhh-hhhhhhcCCCCCCCceEEEEEecCCcEEEec
Q 036950          123 VKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKV-LKKILKEGDGYENQMMVQWFKLHDGTVFVKK  201 (469)
Q Consensus       123 ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~dv~~d~~l-~k~il~~G~g~~~p~~V~~~~l~~g~~~d~~  201 (469)
                      |||.++||..+...   .+.||+++++.|.|+|+++....+....... ....+....          ....-|..+.. 
T Consensus       126 i~~~~~yg~~~~~~---~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~----------~~~~~g~~~~~-  191 (338)
T 2if4_A          126 VGWELAYGKEGNFS---FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAAD----------RRKMDGNSLFK-  191 (338)
T ss_dssp             ECGGGSSCSSCCCS---SSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHH----------HHHHHHHHTCS-
T ss_pred             ECHHHhcCCCCCCC---CCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHH----------HHHHHHHHHHh-
Confidence            99999999987631   1458999999999999998764332100000 000000000          00000111000 


Q ss_pred             CCCCCCcEEEEcCC-CccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeeeecccccC
Q 036950          202 GHDEEPLFEFKIDE-EQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWD  280 (469)
Q Consensus       202 ~~~~~~p~~~~lG~-~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~~~~~~  280 (469)
                                 .|+ ...+.-++.+|......          ..|...+                               
T Consensus       192 -----------~g~~~~A~~~y~~Al~~~p~~----------~~~~~~~-------------------------------  219 (338)
T 2if4_A          192 -----------EEKLEEAMQQYEMAIAYMGDD----------FMFQLYG-------------------------------  219 (338)
T ss_dssp             -----------SSCCHHHHHHHHHHHHHSCHH----------HHHTCCH-------------------------------
T ss_pred             -----------cCCHHHHHHHHHHHHHHhccc----------hhhhhcc-------------------------------
Confidence                       110 02333444444321100          0000000                               


Q ss_pred             CChHHHH--HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHH
Q 036950          281 MNTQEKI--EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQA  358 (469)
Q Consensus       281 l~~~e~~--~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~a  358 (469)
                       ...+..  -....+.+.|..+++.++|.+|+..|++||.+.+..               ..+|+|+|.||+.+++|++|
T Consensus       220 -~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~a~~~~g~~~~A  283 (338)
T 2if4_A          220 -KYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---------------PKALFRRGKAKAELGQMDSA  283 (338)
T ss_dssp             -HHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHH
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHH
Confidence             001111  112356789999999999999999999999987754               67899999999999999999


Q ss_pred             HHHHHHHHhhc
Q 036950          359 EKLCSKVLELD  369 (469)
Q Consensus       359 i~~~~~al~~d  369 (469)
                      +.+++++++++
T Consensus       284 ~~~l~~al~l~  294 (338)
T 2if4_A          284 RDDFRKAQKYA  294 (338)
T ss_dssp             HHHHHHTTC--
T ss_pred             HHHHHHHHHHC
Confidence            99999999998

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.86  E-value=2.3e-21  Score=165.95  Aligned_cols=121  Identities=36%  Similarity=0.607  Sum_probs=102.8

Q ss_pred             cccc--cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcE
Q 036950           45 KDIC--KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEK  118 (469)
Q Consensus        45 ~dv~--~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~  118 (469)
                      .|++  +++|++|+++++|+|...|+.||.|++||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|++
T Consensus         6 ~dv~~~~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~   85 (135)
T 1r9h_A            6 IDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEV   85 (135)
T ss_dssp             EECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCE
T ss_pred             eecccCCCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCE
Confidence            3566  789999999999999557999999999999998899999987    6999999999999999999999999999


Q ss_pred             EEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccccccc--cchhhh
Q 036950          119 VLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDIT--KDKKVL  171 (469)
Q Consensus       119 ~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~dv~--~d~~l~  171 (469)
                      +.|.|||++|||+.+.+     +.||++++|+|+|+|+++.. .++.  .|++++
T Consensus        86 ~~v~ip~~~aYG~~g~~-----~~Ip~~~~l~f~v~l~~i~~-~~l~~~~d~~v~  134 (135)
T 1r9h_A           86 AEFTIRSDYGYGDAGSP-----PKIPGGATLIFEVELFEWSA-EDISPDRDGTIL  134 (135)
T ss_dssp             EEEEECGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-------------
T ss_pred             EEEEEChHHcCCCCCCC-----CCcCcCCcEEEEEEEEEeec-CCcCcCCCCccc
Confidence            99999999999998764     56999999999999999976 3554  455554

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.86  E-value=2.6e-21  Score=167.42  Aligned_cols=111  Identities=37%  Similarity=0.589  Sum_probs=103.1

Q ss_pred             cccc--cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcE
Q 036950           45 KDIC--KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEK  118 (469)
Q Consensus        45 ~dv~--~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~  118 (469)
                      +|++  .|+|++|+++++|+|...|..||.|.|||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|++
T Consensus        27 ~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~  106 (144)
T 3o5e_A           27 EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEI  106 (144)
T ss_dssp             EECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCE
T ss_pred             ccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCE
Confidence            6676  799999999999999658999999999999999899999987    6899999999999999999999999999


Q ss_pred             EEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeecc
Q 036950          119 VLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKT  160 (469)
Q Consensus       119 ~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  160 (469)
                      +.|.|||++|||..+.+     +.||++++|+|+|+|++|..
T Consensus       107 ~~v~ipp~~aYG~~g~~-----~~Ipp~~~L~f~VeL~~ikg  143 (144)
T 3o5e_A          107 CHLLCKPEYAYGSAGSL-----PKIPSNATLFFEIELLDFKG  143 (144)
T ss_dssp             EEEEECGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEChHHCcCCCCCC-----CCcCCCCeEEEEEEEEEecC
Confidence            99999999999998874     56999999999999999853

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.86  E-value=3.7e-21  Score=163.20  Aligned_cols=111  Identities=37%  Similarity=0.589  Sum_probs=102.4

Q ss_pred             cccc--cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcE
Q 036950           45 KDIC--KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEK  118 (469)
Q Consensus        45 ~dv~--~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~  118 (469)
                      +|++  +|+|++|+++++|+|...|+.||.|.+||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|++
T Consensus        11 ~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~   90 (128)
T 3o5q_A           11 EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEI   90 (128)
T ss_dssp             EECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred             ceecccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCE
Confidence            4555  789999999999999557999999999999999999999987    6899999999999999999999999999


Q ss_pred             EEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeecc
Q 036950          119 VLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKT  160 (469)
Q Consensus       119 ~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  160 (469)
                      +.|.|||++|||+.+.+     +.||++++|+|+|+|+++..
T Consensus        91 ~~v~ip~~~aYG~~g~~-----~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           91 CHLLCKPEYAYGSAGSL-----PKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             EEEEECGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEChHHcCCCCCCC-----CCcCCCCEEEEEEEEEEecC
Confidence            99999999999998874     56999999999999999853

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.85  E-value=6e-21  Score=160.03  Aligned_cols=105  Identities=35%  Similarity=0.541  Sum_probs=97.2

Q ss_pred             CCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc-----------ccEEEEECCCccchhHHHHHhcccCCcE
Q 036950           50 DGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS-----------DGVEFTVGDGYFCAALAKAVKTMKKGEK  118 (469)
Q Consensus        50 d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t-----------~~~~~~ig~~~~~~gle~aL~gmk~Ge~  118 (469)
                      ++|+.|+++++|+|...|+.||.|++||++++.||++|+++           .|+.|.+|.+++++||+++|.+|++|++
T Consensus         3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   82 (119)
T 3kz7_A            3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK   82 (119)
T ss_dssp             SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred             CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence            68999999999999667999999999999999899999987           5899999999999999999999999999


Q ss_pred             EEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          119 VLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       119 ~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      +.|.|||++|||+.+.+.    ..||++++|+|+|+|+++
T Consensus        83 ~~v~ip~~~aYG~~g~~~----~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           83 ARLEIEPEWAYGKKGQPD----AKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEECGGGTTCTTCBGG----GTBCTTCCEEEEEEEEEE
T ss_pred             EEEEECcHHhcCCCCCCC----CccCcCCeEEEEEEEEEe
Confidence            999999999999987641    359999999999999986

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.84  E-value=8.6e-21  Score=165.59  Aligned_cols=109  Identities=28%  Similarity=0.432  Sum_probs=98.6

Q ss_pred             cCCceEEEEEecCCcc-CCCCCCCEEEEEEEEEecCCcEEeccccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCc
Q 036950           49 KDGGIFKKILVEGKKW-ENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQY  127 (469)
Q Consensus        49 ~d~g~~~~i~~~G~g~-~~~~~gd~V~i~y~~~~~~G~~~~~t~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~  127 (469)
                      .++.+.|+++++|+|. ..|..||.|++||++++.||++|++++|+.|.+|.+++++||+++|.+|++|++++|.|||++
T Consensus        41 ~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~v~IP~~~  120 (157)
T 2jwx_A           41 GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKY  120 (157)
T ss_dssp             SSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEEEEEEEETTTTSSCHHHHHHTTTSCTTCEEEEEECGGG
T ss_pred             CCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEECchh
Confidence            3444589999999993 389999999999999988999999989999999999999999999999999999999999999


Q ss_pred             cccCCC-CCCCCCCCCCCCCceEEEeEeeeeecccc
Q 036950          128 AFGKNG-RPATGDEDAVPSNANLHITLEMVSWKTVS  162 (469)
Q Consensus       128 ayg~~~-~~~~~~~~~ip~~~~l~~~v~l~~~~~~~  162 (469)
                      +||..+ .+     +.||++++|+|+|+|+++....
T Consensus       121 aYG~~g~~~-----~~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A          121 CYGPQGSRS-----PYIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             TTTTTCCSS-----SCCCTTCCEEEEEEEEEEEECS
T ss_pred             cCCcccccC-----CCcCCCCeEEEEEEEEEEEccc
Confidence            999987 42     4699999999999999987654

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.84  E-value=2.1e-20  Score=156.28  Aligned_cols=110  Identities=30%  Similarity=0.438  Sum_probs=100.1

Q ss_pred             cccccCCceEEEEEecCCcc-CCCCCCCEEEEEEEEEecCCcEEeccccEEEEECCCccchhHHHHHhcccCCcEEEEEE
Q 036950           45 KDICKDGGIFKKILVEGKKW-ENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTV  123 (469)
Q Consensus        45 ~dv~~d~g~~~~i~~~G~g~-~~~~~gd~V~i~y~~~~~~G~~~~~t~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~i  123 (469)
                      .+++.++++.|+++++|+|. ..|+.||.|++||++++.+|++|++++|+.|.+|.+++++||+++|.+|++|+++.|.|
T Consensus         7 ~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~~i   86 (118)
T 2awg_A            7 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTA   86 (118)
T ss_dssp             EESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEEEEEEEETTSSCSCHHHHHHGGGSCTTCEEEEEE
T ss_pred             eEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECCCCEEEEECCCChhHHHHHHHhCCCCCCEEEEEE
Confidence            34556677999999999994 27999999999999998899999988999999999999999999999999999999999


Q ss_pred             cCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeec
Q 036950          124 KPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK  159 (469)
Q Consensus       124 p~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  159 (469)
                      ||++|||..+.+     +.||++++|+|+|+|+++.
T Consensus        87 p~~~ayG~~~~~-----~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           87 DSKYCYGPQGRS-----PYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             CGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEE
T ss_pred             ChHHccCCCCCC-----CccCCCCeEEEEEEEEEec
Confidence            999999998764     4699999999999999874

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.84  E-value=2.7e-20  Score=154.53  Aligned_cols=105  Identities=26%  Similarity=0.411  Sum_probs=96.7

Q ss_pred             cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950           49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK  124 (469)
Q Consensus        49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip  124 (469)
                      .++|+.++++++|+|...|+.||.|.+||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|+++.|.||
T Consensus         4 ~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ip   83 (113)
T 1yat_A            4 IEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIP   83 (113)
T ss_dssp             CGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEEC
T ss_pred             CCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEEC
Confidence            467999999999999434999999999999998899999987    5899999999999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          125 PQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       125 ~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      |+++||+.+.+     +.||++++|+|+|+|+++
T Consensus        84 ~~~ayG~~~~~-----~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           84 GPYAYGPRGFP-----GLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEE
T ss_pred             HHHCcCCCCCC-----CCcCCCCeEEEEEEEEEe
Confidence            99999998764     459999999999999886

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.84  E-value=7.6e-21  Score=170.40  Aligned_cols=124  Identities=34%  Similarity=0.470  Sum_probs=95.4

Q ss_pred             cchhhhhhhhhcCCCCCCCc----eEE-EEEec-CCcEEEecCCCCCCcEEEEcCCC-ccchhHHHHHhccccCcEEEEE
Q 036950          166 KDKKVLKKILKEGDGYENQM----MVQ-WFKLH-DGTVFVKKGHDEEPLFEFKIDEE-QVIDGLDRAVKTMKKGEVALVT  238 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~----~V~-~~~l~-~g~~~d~~~~~~~~p~~~~lG~~-~v~~gle~~L~~m~~Ge~~~~~  238 (469)
                      .++++.++++++|+|.....    +|+ .+++. +|++||++ +.++.|+.|.+|.+ .+++||+.+|.+|++||++.|+
T Consensus        47 ~~~gl~~~vl~~G~G~~~~~Gd~V~v~Y~g~l~~dG~~fdss-~~~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v~  125 (180)
T 2f4e_A           47 LDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDT-WHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVH  125 (180)
T ss_dssp             EETTEEEEEEECCBSCCBCTTCEEEEEEEEEETTTCCEEEET-TTTTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEEE
T ss_pred             CCCceEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCcEEecc-CccCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEEEE
Confidence            35689999999999974332    455 88888 59999998 66688999999999 9999999999999999999999


Q ss_pred             EcCCCccCCCCCcccccCCCCCceEEEEEEEeeeeeccc---ccCCChHHHHHHhh
Q 036950          239 IEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKE---SWDMNTQEKIEAAG  291 (469)
Q Consensus       239 i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~~~---~~~l~~~e~~~~a~  291 (469)
                      |||+++||..+... .+.||++++|+|+|+|+++...++   .|+|+.+||++.|.
T Consensus       126 iPp~~aYG~~g~~~-~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A~  180 (180)
T 2f4e_A          126 VGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAAD  180 (180)
T ss_dssp             ECGGGTTTTTCBSS-SSCBCTTCCEEEEEEEEEESCBCCC----------------
T ss_pred             ECchHhCCcCCccc-CCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhcC
Confidence            99999999987631 246999999999999999998877   99999999998773

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.84  E-value=7.6e-21  Score=162.48  Aligned_cols=110  Identities=25%  Similarity=0.424  Sum_probs=98.0

Q ss_pred             ccccccCCceEEEEEecCCccCCCCCCCEEEEEEEEEec-CCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcE
Q 036950           44 VKDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLE-DGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEK  118 (469)
Q Consensus        44 ~~dv~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~-~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~  118 (469)
                      .++++.++|++|+++++|+| ..+..||.|++||++++. +|++|+++    +|+.|.+|.+++++||+++|.+|++|++
T Consensus        19 ~~~v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~G~e~aL~gm~~Ge~   97 (134)
T 3b7x_A           19 MLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGEL   97 (134)
T ss_dssp             CEESSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCHHHHHHHHTCEETCE
T ss_pred             cceeeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhHHHHHHHhCCCCCCE
Confidence            35788899999999999999 688899999999999987 69999987    5899999999999999999999999999


Q ss_pred             EEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeec
Q 036950          119 VLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK  159 (469)
Q Consensus       119 ~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  159 (469)
                      +.|.|||++|||+.+.+     +.||++++|+|+|+|+++.
T Consensus        98 ~~v~ip~~~aYG~~~~~-----~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           98 ARFLFKPNYAYGTLGCP-----PLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             EEEEECGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEC
T ss_pred             EEEEECHHHCcCCCCCC-----CCcCcCCeEEEEEEEEEEe
Confidence            99999999999998764     4599999999999999875

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.84  E-value=3.6e-20  Score=152.20  Aligned_cols=102  Identities=27%  Similarity=0.495  Sum_probs=94.6

Q ss_pred             ceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCc
Q 036950           52 GIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQY  127 (469)
Q Consensus        52 g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~  127 (469)
                      |+.|+++++|+|...|+.||.|++||++++.||++|+++    +|+.|.+|.+++++||+++|.+|++|+++.|.|||++
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~   80 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence            688999999999444999999999999998899999987    6999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          128 AFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       128 ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      +||+.+.+     +.||++++|+|+|+|+++
T Consensus        81 ayG~~~~~-----~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           81 AYGATGHP-----GIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             TTTTTCBT-----TTBCTTCCEEEEEEEEEE
T ss_pred             ccCCCCCC-----CCcCCCCeEEEEEEEEEe
Confidence            99998764     469999999999999886

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.83  E-value=5.8e-20  Score=155.30  Aligned_cols=109  Identities=24%  Similarity=0.382  Sum_probs=99.6

Q ss_pred             ccccCCceEEEEEecCCc-cCCCCCCCEEEEEEEEEec-CCcEEecc------ccEEEEECCCccchhHHHHHhcccCCc
Q 036950           46 DICKDGGIFKKILVEGKK-WENPKDLDEVFVKYEVRLE-DGTLISKS------DGVEFTVGDGYFCAALAKAVKTMKKGE  117 (469)
Q Consensus        46 dv~~d~g~~~~i~~~G~g-~~~~~~gd~V~i~y~~~~~-~G~~~~~t------~~~~~~ig~~~~~~gle~aL~gmk~Ge  117 (469)
                      .+..++++.++++.+|++ +..|+.||.|.+||++++. ||++|+++      .|+.|.+|.+++++||+++|.+|++|+
T Consensus         7 ~~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   86 (125)
T 4dip_A            7 ALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGE   86 (125)
T ss_dssp             GGCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTC
T ss_pred             eEECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCC
Confidence            345688999999999993 2789999999999999997 99999987      689999999999999999999999999


Q ss_pred             EEEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeecc
Q 036950          118 KVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKT  160 (469)
Q Consensus       118 ~~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  160 (469)
                      ++.|.|||++|||+.+.      +.||++++|+|+|+|+++..
T Consensus        87 ~~~~~ip~~~aYG~~g~------~~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           87 KRKLIIPPALGYGKEGK------GKIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             EEEEEECGGGTTTTTCB------TTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEEChHHhcCCCCC------CCCCCCCeEEEEEEEEEEEc
Confidence            99999999999999885      35999999999999999865

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.83  E-value=5.3e-20  Score=156.78  Aligned_cols=106  Identities=28%  Similarity=0.453  Sum_probs=98.3

Q ss_pred             cccCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEE
Q 036950           47 ICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLT  122 (469)
Q Consensus        47 v~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~  122 (469)
                      ...++|+.++++++|+| ..|+.||.|++||++++.||++|+++    +|+.|.+|.+++++||+++|.+|++|+++.|.
T Consensus        24 ~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~  102 (133)
T 2y78_A           24 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT  102 (133)
T ss_dssp             EECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEE
T ss_pred             EECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEE
Confidence            34688999999999999 79999999999999998899999987    68999999999999999999999999999999


Q ss_pred             EcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          123 VKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       123 ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      |||+++||+.+.+     +.||++++|+|+|+|+++
T Consensus       103 ip~~~aYG~~~~~-----~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          103 IPPQLGYGARGAG-----GVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             ECGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEC
T ss_pred             ECcHHhCCCCCCC-----CCCCCCCeEEEEEEEEEC
Confidence            9999999998764     469999999999999874

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.83  E-value=1e-19  Score=154.69  Aligned_cols=109  Identities=29%  Similarity=0.541  Sum_probs=97.1

Q ss_pred             cccCCceEEEEEecC-Cc-cCCCCCCCEEEEEEEEEe-cCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEE
Q 036950           47 ICKDGGIFKKILVEG-KK-WENPKDLDEVFVKYEVRL-EDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKV  119 (469)
Q Consensus        47 v~~d~g~~~~i~~~G-~g-~~~~~~gd~V~i~y~~~~-~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~  119 (469)
                      ++.++.++++++++| .| +..|+.||.|++||++++ .+|++|+++    .|+.|.+|.+++++||+++|.+|++|+++
T Consensus        12 ~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge~~   91 (129)
T 2vn1_A           12 LTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC   91 (129)
T ss_dssp             CSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTCEE
T ss_pred             ECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCCEE
Confidence            345667778899977 44 378999999999999998 799999987    68999999999999999999999999999


Q ss_pred             EEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeecc
Q 036950          120 LLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKT  160 (469)
Q Consensus       120 ~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  160 (469)
                      .|.|||+++||+.+.+     +.||++++|+|+|+|+++..
T Consensus        92 ~v~ip~~~aYG~~~~~-----~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           92 LVRIESMYGYGDEGCG-----ESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             EEEECGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEChHHcCCCCCCC-----CCcCCCCeEEEEEEEEEEec
Confidence            9999999999998764     46999999999999999865

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.82  E-value=1.7e-18  Score=171.52  Aligned_cols=233  Identities=22%  Similarity=0.342  Sum_probs=169.3

Q ss_pred             cccccCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEeccccEEEEECCCc---cchhHHHHHhcccCCcEEEE
Q 036950           45 KDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGY---FCAALAKAVKTMKKGEKVLL  121 (469)
Q Consensus        45 ~dv~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t~~~~~~ig~~~---~~~gle~aL~gmk~Ge~~~~  121 (469)
                      .++..|++++++|+++|+|..+|..|+.|+|||++++ +|++|+++ |+.|.+|.|.   ++++|+.+|.+|++|+++.+
T Consensus        19 ~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l   96 (336)
T 1p5q_A           19 SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV   96 (336)
T ss_dssp             ---CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred             eeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-CeEEEeCCCCccccchHHHHHHhcCCCCCeEEE
Confidence            4566799999999999999668999999999999998 99999986 9999999886   58999999999999999999


Q ss_pred             EEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccccccccc-----hhhhhhhhhcCCCCCCCceEEEEEecCCc
Q 036950          122 TVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKD-----KKVLKKILKEGDGYENQMMVQWFKLHDGT  196 (469)
Q Consensus       122 ~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~dv~~d-----~~l~k~il~~G~g~~~p~~V~~~~l~~g~  196 (469)
                      .|+|..+||..+...    ..||+++.+.|++.+.++.........     ..........|                 .
T Consensus        97 ~i~p~~ayg~~g~~~----~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g-----------------~  155 (336)
T 1p5q_A           97 YLKPSYAFGSVGKEK----FQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG-----------------T  155 (336)
T ss_dssp             EECTTTTTTTTCBGG----GTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH-----------------H
T ss_pred             EECCccccCcCCCCc----cCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH-----------------H
Confidence            999999999988642    248999999999999998764332110     00000000000                 0


Q ss_pred             EEEecCCCCCCcEEEEcCC-CccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeeeec
Q 036950          197 VFVKKGHDEEPLFEFKIDE-EQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKE  275 (469)
Q Consensus       197 ~~d~~~~~~~~p~~~~lG~-~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~  275 (469)
                      .+.            ..|+ ...+.-++.+|....           .                 ...         +.. 
T Consensus       156 ~~~------------~~g~~~~A~~~y~~Al~~~p-----------~-----------------~~~---------~~~-  185 (336)
T 1p5q_A          156 VYF------------KEGKYKQALLQYKKIVSWLE-----------Y-----------------ESS---------FSN-  185 (336)
T ss_dssp             HHH------------HHTCHHHHHHHHHHHHHHTT-----------T-----------------CCC---------CCS-
T ss_pred             HHH------------HCCCHHHHHHHHHHHHHHhh-----------c-----------------ccc---------CCh-
Confidence            000            0111 133444455553211           0                 000         000 


Q ss_pred             ccccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCH
Q 036950          276 KESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEY  355 (469)
Q Consensus       276 ~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~  355 (469)
                       +.   ..+-.-..+..+.+.|..+++.|+|.+|+..|++|+.+.+..               ..+|+|+|.||+++++|
T Consensus       186 -~~---~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~  246 (336)
T 1p5q_A          186 -EE---AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---------------EKGLSRRGEAHLAVNDF  246 (336)
T ss_dssp             -HH---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCH
T ss_pred             -HH---HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHCCCH
Confidence             00   001112335677899999999999999999999999987765               67899999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 036950          356 KQAEKLCSKVLELD  369 (469)
Q Consensus       356 ~~ai~~~~~al~~d  369 (469)
                      ++|+.++++||+++
T Consensus       247 ~~A~~~~~~al~l~  260 (336)
T 1p5q_A          247 ELARADFQKVLQLY  260 (336)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHC
Confidence            99999999999998

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.82  E-value=6.8e-20  Score=167.72  Aligned_cols=104  Identities=24%  Similarity=0.359  Sum_probs=97.3

Q ss_pred             ccCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc-ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCC
Q 036950           48 CKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS-DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQ  126 (469)
Q Consensus        48 ~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t-~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~  126 (469)
                      .+++|+.|+++.+|+| ..|..||.|+|||++++.||++|++| .|+.|.+|  ++++||+++|.+|++|++++|.|||+
T Consensus       114 ~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~IPp~  190 (219)
T 3oe2_A          114 ELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQPQWFRLD--SVISGWTSALQNMPTGAKWRLVIPSD  190 (219)
T ss_dssp             ECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEECSSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEECGG
T ss_pred             ECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeeccCCcEEEEec--chhHHHHHHHhCCCCCCEEEEEECch
Confidence            3789999999999999 79999999999999999999999998 88999887  89999999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCCCCceEEEeEeeeeec
Q 036950          127 YAFGKNGRPATGDEDAVPSNANLHITLEMVSWK  159 (469)
Q Consensus       127 ~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  159 (469)
                      +|||+.+.+     +.|||+++|+|+|+|++|.
T Consensus       191 lAYG~~g~~-----~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          191 QAYGAEGAG-----DLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             GTTTTTCBT-----TTBCTTCCEEEEEEEEEEE
T ss_pred             hcCCCCCCC-----CCCCCCCeEEEEEEEEEEe
Confidence            999998874     4599999999999999875

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.82  E-value=1e-19  Score=160.49  Aligned_cols=109  Identities=23%  Similarity=0.367  Sum_probs=98.5

Q ss_pred             cccCCceEEEEEecCCccCC-CCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEE
Q 036950           47 ICKDGGIFKKILVEGKKWEN-PKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLL  121 (469)
Q Consensus        47 v~~d~g~~~~i~~~G~g~~~-~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~  121 (469)
                      ..+++|+.|+++.+|+| .. |..||.|+|||++++.||++|+++    .|+.|.+  +++++||+++|.+|++|+++.|
T Consensus        33 ~~~~sGl~~~vl~~G~G-~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~~  109 (167)
T 1jvw_A           33 VKLPSGLVFQRIARGSG-KRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVIKGWTEALQLMREGDRWRL  109 (167)
T ss_dssp             EECTTSCEEEEEECCCC-SBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECG--GGSCHHHHHHHTTCCTTCEEEE
T ss_pred             EECCCCEEEEEEEcCCC-CcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEe--CchhHHHHHHHcCCCCCCEEEE
Confidence            34689999999999999 66 999999999999998899999987    5788877  6899999999999999999999


Q ss_pred             EEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccccc
Q 036950          122 TVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSD  163 (469)
Q Consensus       122 ~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d  163 (469)
                      .|||++|||..+.+     +.||+|++|+|+|+|+++.....
T Consensus       110 ~Ip~~laYG~~g~~-----~~Ipp~s~LiF~VeL~~i~~~~~  146 (167)
T 1jvw_A          110 FIPYDLAYGVTGGG-----GMIPPYSPLEFDVELISIKDGGK  146 (167)
T ss_dssp             EECGGGTTTTTCSS-----SSSCTTCCEEEEEEEEEEGGGCC
T ss_pred             EECchhhCCCCCCC-----CCcCCCCeEEEEEEEEEEEcCCC
Confidence            99999999998864     56999999999999999986443

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=5e-20  Score=157.59  Aligned_cols=113  Identities=30%  Similarity=0.441  Sum_probs=101.9

Q ss_pred             ccccCCceEEEEEecCCcc-CCCCCCCEEEEEEEEEecCCcEEeccccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950           46 DICKDGGIFKKILVEGKKW-ENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK  124 (469)
Q Consensus        46 dv~~d~g~~~~i~~~G~g~-~~~~~gd~V~i~y~~~~~~G~~~~~t~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip  124 (469)
                      +++.++++.|+++++|+|. ..|+.||.|++||++++.||++|+++.|+.|.+|.+++++||+++|.+|++|+++.|.||
T Consensus        12 ~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~v~ip   91 (135)
T 2d9f_A           12 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTAD   91 (135)
T ss_dssp             ESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEEEEEEEETTSCCSCTTTTTTGGGSCTTCEEEEEEC
T ss_pred             EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecCCCEEEEeCCCChhHHHHHHHhCCCCCCEEEEEEC
Confidence            4555677999999999993 389999999999999988999999889999999999999999999999999999999999


Q ss_pred             CCccccCCC-CCCCCCCCCCCCCceEEEeEeeeeeccccc
Q 036950          125 PQYAFGKNG-RPATGDEDAVPSNANLHITLEMVSWKTVSD  163 (469)
Q Consensus       125 ~~~ayg~~~-~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d  163 (469)
                      |+++||..+ .+     +.||++++|+|+|+|+++....+
T Consensus        92 ~~~aYG~~~~~~-----~~Ip~~~~l~f~vel~~v~~~~~  126 (135)
T 2d9f_A           92 SKYCYGPQGSRS-----PYIPPHAALCLEVTLKTAVDRPD  126 (135)
T ss_dssp             HHHHTCTTCCSS-----SCCCTTCCEEEEEEEEEEESSCS
T ss_pred             hhHccCcCCcCC-----CccCCCCeEEEEEEEEEeecCCc
Confidence            999999887 42     46999999999999999977544

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.82  E-value=9.6e-20  Score=154.63  Aligned_cols=107  Identities=29%  Similarity=0.441  Sum_probs=96.8

Q ss_pred             cccCCceEEE--EEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEE
Q 036950           47 ICKDGGIFKK--ILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVL  120 (469)
Q Consensus        47 v~~d~g~~~~--i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~  120 (469)
                      ..+++|+.++  ++++|+|...|+.||.|+++|++++.||++|+++    +|+.|.+|.+++++||+++|.+|++|+++.
T Consensus        18 ~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~   97 (130)
T 2lgo_A           18 GPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKAL   97 (130)
T ss_dssp             SSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEE
T ss_pred             eeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEE
Confidence            3457888887  9999999434999999999999998899999987    589999999999999999999999999999


Q ss_pred             EEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       121 ~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      |.|||+++||+.+.+     +.||++++|+|+|+|+++
T Consensus        98 v~ip~~~aYG~~~~~-----~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           98 FTIPYQLAYGERGYP-----PVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EEECTTTSTTTTCCS-----TTSCSSCCEEEEEEEEEC
T ss_pred             EEECcHHHCCCCCCC-----CCcCCCCeEEEEEEEEEC
Confidence            999999999998764     459999999999999874

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.81  E-value=4.7e-20  Score=159.49  Aligned_cols=108  Identities=44%  Similarity=0.690  Sum_probs=96.9

Q ss_pred             cccc--cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCc
Q 036950          162 SDIT--KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGE  233 (469)
Q Consensus       162 ~dv~--~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge  233 (469)
                      .|++  .|++++++++++|+|...|.     +|+ .+++.||++||++ +.++.|+.|.+|.+.+++||+.+|.+|++||
T Consensus        27 ~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss-~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge  105 (144)
T 3o5e_A           27 EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGE  105 (144)
T ss_dssp             EECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEES-GGGTSCEEEETTSSSSCHHHHHHHTTCCBTC
T ss_pred             ccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEee-cccCCCeEEEeCCCcccHHHHHHHhCCCCCC
Confidence            3444  67899999999999986665     455 8999999999997 6668899999999999999999999999999


Q ss_pred             EEEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          234 VALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       234 ~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      ++.|+|||.+|||+.+.+   +.|||+++|+|+|+|++|.
T Consensus       106 ~~~v~ipp~~aYG~~g~~---~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          106 ICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             EEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             EEEEEEChHHCcCCCCCC---CCcCCCCeEEEEEEEEEec
Confidence            999999999999998875   4799999999999999986

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.81  E-value=7.3e-20  Score=153.39  Aligned_cols=104  Identities=39%  Similarity=0.518  Sum_probs=91.9

Q ss_pred             chhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCC-------CCCcEEEEcCCCccchhHHHHHhccccCc
Q 036950          167 DKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHD-------EEPLFEFKIDEEQVIDGLDRAVKTMKKGE  233 (469)
Q Consensus       167 d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~-------~~~p~~~~lG~~~v~~gle~~L~~m~~Ge  233 (469)
                      ++++.++++++|+|...|.     +|+ .+++.||++||++ +.       .+.|+.|.+|.+.+++||+.+|.+|++||
T Consensus         3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss-~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   81 (119)
T 3kz7_A            3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTN-IQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE   81 (119)
T ss_dssp             SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEEC-CCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEec-cccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence            5678999999999976665     455 8899999999998 43       24899999999999999999999999999


Q ss_pred             EEEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          234 VALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       234 ~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      ++.|+|||.+|||+.+.+.  ..|||+++|+|+|+|+++.
T Consensus        82 ~~~v~ip~~~aYG~~g~~~--~~Ip~~~~l~f~veL~~i~  119 (119)
T 3kz7_A           82 KARLEIEPEWAYGKKGQPD--AKIPPNTKLIFEVELVDID  119 (119)
T ss_dssp             EEEEEECGGGTTCTTCBGG--GTBCTTCCEEEEEEEEEEC
T ss_pred             EEEEEECcHHhcCCCCCCC--CccCcCCeEEEEEEEEEeC
Confidence            9999999999999988753  3699999999999999874

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.81  E-value=4.4e-19  Score=162.65  Aligned_cols=107  Identities=28%  Similarity=0.446  Sum_probs=99.5

Q ss_pred             ccccCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEE
Q 036950           46 DICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLL  121 (469)
Q Consensus        46 dv~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~  121 (469)
                      .+.+++|+.|+++.+|+| ..|..||.|++||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|+++.|
T Consensus        99 ~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v  177 (209)
T 3uf8_A           99 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL  177 (209)
T ss_dssp             CEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEE
T ss_pred             ccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEE
Confidence            445789999999999999 67999999999999999999999987    6899999999999999999999999999999


Q ss_pred             EEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          122 TVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       122 ~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      .|||++|||+.+.+     +.||++++|+|+|+|+++
T Consensus       178 ~Ipp~~aYG~~g~~-----~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          178 TIPPQLGYGARGAA-----GVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EECGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEC
T ss_pred             EECcHHhCCCCCCC-----CCcCCCCeEEEEEEEEEC
Confidence            99999999998874     459999999999999874

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.81  E-value=4.6e-20  Score=161.38  Aligned_cols=83  Identities=20%  Similarity=0.308  Sum_probs=76.2

Q ss_pred             ccCCceEEEEEecCCccC-CCCCCCEEEEEEEEEec--CCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEE
Q 036950           48 CKDGGIFKKILVEGKKWE-NPKDLDEVFVKYEVRLE--DGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVL  120 (469)
Q Consensus        48 ~~d~g~~~~i~~~G~g~~-~~~~gd~V~i~y~~~~~--~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~  120 (469)
                      .+++|+.|+++++|+|.. .+..||.|++||++++.  +|++||||    +|+.|.+|.+++|+||+++|.+|++|++++
T Consensus         7 ~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~~   86 (165)
T 2lkn_A            7 LREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQ   86 (165)
T ss_dssp             HHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEEE
T ss_pred             ccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCceEE
Confidence            467899999999999942 23689999999999985  59999998    799999999999999999999999999999


Q ss_pred             EEEcCCcccc
Q 036950          121 LTVKPQYAFG  130 (469)
Q Consensus       121 ~~ip~~~ayg  130 (469)
                      |+|||++|||
T Consensus        87 ~~ipp~laYG   96 (165)
T 2lkn_A           87 FLCDIKHVVL   96 (165)
T ss_dssp             EECCHHHHSS
T ss_pred             EEECHHHhcC
Confidence            9999999999

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.80  E-value=3.7e-20  Score=162.00  Aligned_cols=80  Identities=20%  Similarity=0.249  Sum_probs=72.0

Q ss_pred             cchhhhhhhhhcCCCCCCC--c----eEE-EEEecC--CcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEE
Q 036950          166 KDKKVLKKILKEGDGYENQ--M----MVQ-WFKLHD--GTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVAL  236 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p--~----~V~-~~~l~~--g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~  236 (469)
                      .++++.|+++++|+|...+  .    +|| .|+|.|  |++|||| +.++.|++|.+|.+++|+||+.||.+|++||+++
T Consensus         8 ~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS-~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~~   86 (165)
T 2lkn_A            8 REDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDS-RARGKPMELIIGKKFKLPVWETIVCTMREGEIAQ   86 (165)
T ss_dssp             HTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEES-TTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEEE
T ss_pred             cCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEec-ccCCCCEEEEecCCCccHHHHHHHhcCccCceEE
Confidence            4678999999999997432  2    566 999964  9999998 7889999999999999999999999999999999


Q ss_pred             EEEcCCCccC
Q 036950          237 VTIEPEYAFG  246 (469)
Q Consensus       237 ~~i~~~~~yg  246 (469)
                      |+|||++|||
T Consensus        87 ~~ipp~laYG   96 (165)
T 2lkn_A           87 FLCDIKHVVL   96 (165)
T ss_dssp             EECCHHHHSS
T ss_pred             EEECHHHhcC
Confidence            9999999999

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.80  E-value=9e-20  Score=154.65  Aligned_cols=104  Identities=43%  Similarity=0.680  Sum_probs=94.5

Q ss_pred             cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEE
Q 036950          166 KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTI  239 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i  239 (469)
                      .++++.++++++|+|...|.     +|+ .+++.||++||++ +.++.|+.|.+|.+++++||+.+|.+|++||++.|+|
T Consensus        17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss-~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~i   95 (128)
T 3o5q_A           17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLC   95 (128)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEH-HHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEec-CCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEE
Confidence            67899999999999986665     455 8899999999998 5557899999999999999999999999999999999


Q ss_pred             cCCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          240 EPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       240 ~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      ||.+|||+.+..   +.|||+++|+|+|+|+++.
T Consensus        96 p~~~aYG~~g~~---~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           96 KPEYAYGSAGSL---PKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             CGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             ChHHcCCCCCCC---CCcCCCCEEEEEEEEEEec
Confidence            999999998875   4799999999999999986

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.80  E-value=1.7e-19  Score=153.15  Aligned_cols=110  Identities=21%  Similarity=0.317  Sum_probs=97.9

Q ss_pred             ccCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhc------ccCCc
Q 036950           48 CKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKT------MKKGE  117 (469)
Q Consensus        48 ~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~g------mk~Ge  117 (469)
                      ..++|+.|+++.+|+| ..++.||.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.|      |++|+
T Consensus         9 ~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge   87 (129)
T 1u79_A            9 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   87 (129)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCC
Confidence            3678999999999999 78999999999999998899999987    6899999999999999999999      99999


Q ss_pred             EEEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          118 KVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       118 ~~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      ++.|.|||+++||+.+.+.....+.||+|++|+|+|+|+++
T Consensus        88 ~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           88 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999999999875210011469999999999999876

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.79  E-value=7.1e-19  Score=157.58  Aligned_cols=111  Identities=26%  Similarity=0.428  Sum_probs=100.2

Q ss_pred             cCCceEEEEEecCCccCCCCCCCEEEEEEEEEec-CCcEEecc----ccEEEEECCC-ccchhHHHHHhcccCCcEEEEE
Q 036950           49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLE-DGTLISKS----DGVEFTVGDG-YFCAALAKAVKTMKKGEKVLLT  122 (469)
Q Consensus        49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~-~G~~~~~t----~~~~~~ig~~-~~~~gle~aL~gmk~Ge~~~~~  122 (469)
                      .++|+.|+++.+|+| ..|..||.|++||++++. +|++|+++    .|+.|.+|.+ ++++||+++|.+|++|+++.|.
T Consensus        47 ~~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v~  125 (180)
T 2f4e_A           47 LDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVH  125 (180)
T ss_dssp             EETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEEE
T ss_pred             CCCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEEEE
Confidence            568999999999999 699999999999999987 69999987    6899999999 9999999999999999999999


Q ss_pred             EcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccccc
Q 036950          123 VKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSD  163 (469)
Q Consensus       123 ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d  163 (469)
                      |||+++||..+.+.   .+.||++++|+|+|+|+++....+
T Consensus       126 iPp~~aYG~~g~~~---~~~Ip~~s~l~F~VeL~~v~~~~e  163 (180)
T 2f4e_A          126 VGWELAYGKEGNFS---FPNVPPMADLLYEVEVIGFDETKE  163 (180)
T ss_dssp             ECGGGTTTTTCBSS---SSCBCTTCCEEEEEEEEEESCBCC
T ss_pred             ECchHhCCcCCccc---CCCcCCCCeEEEEEEEEEEecCcc
Confidence            99999999887521   145999999999999999987554

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.79  E-value=6.6e-19  Score=161.31  Aligned_cols=106  Identities=24%  Similarity=0.364  Sum_probs=97.2

Q ss_pred             cccCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEE
Q 036950           47 ICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLT  122 (469)
Q Consensus        47 v~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~  122 (469)
                      +.+++|+.|+++.+|+| ..|..||.|+|||++++.||++|+++    .|+.|.+  +++++||+++|.+|++|+++.|.
T Consensus       102 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~  178 (213)
T 1fd9_A          102 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIY  178 (213)
T ss_dssp             EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEE
Confidence            34689999999999999 89999999999999999999999987    5888888  58999999999999999999999


Q ss_pred             EcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeecc
Q 036950          123 VKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKT  160 (469)
Q Consensus       123 ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  160 (469)
                      |||+++||+.+.+     +.||++++|+|+|+|+++..
T Consensus       179 IP~~laYG~~g~~-----~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          179 VPSGLAYGPRSVG-----GPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             ECGGGTTTTCCCS-----SSCCTTCCEEEEEEEEEEEC
T ss_pred             ECchhccCccCCC-----CCCCCCCeEEEEEEEEEEEc
Confidence            9999999998753     46999999999999999864

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.79  E-value=7.5e-19  Score=145.73  Aligned_cols=103  Identities=30%  Similarity=0.436  Sum_probs=91.3

Q ss_pred             chhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEc
Q 036950          167 DKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIE  240 (469)
Q Consensus       167 d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~  240 (469)
                      ++++.++++++|+|...|.     +|+ .+++.||++||++ +.++.|++|.+|.+.+++||+.+|.+|++||++.|.||
T Consensus         5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s-~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ip   83 (113)
T 1yat_A            5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSS-VDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIP   83 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEES-TTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEEC
T ss_pred             CCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEec-CCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEEC
Confidence            4679999999999986344     455 8888899999998 66568999999999999999999999999999999999


Q ss_pred             CCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          241 PEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       241 ~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      |.++||+.+..   +.|||+++|+|+|+|+++.
T Consensus        84 ~~~ayG~~~~~---~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           84 GPYAYGPRGFP---GLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             GGGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             HHHCcCCCCCC---CCcCCCCeEEEEEEEEEeC
Confidence            99999998765   4699999999999999873

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.78  E-value=1.5e-19  Score=154.40  Aligned_cols=108  Identities=28%  Similarity=0.492  Sum_probs=89.3

Q ss_pred             cccccchhhhhhhhhcCCCCCCCc----eEE-EEEec-CCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEE
Q 036950          162 SDITKDKKVLKKILKEGDGYENQM----MVQ-WFKLH-DGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVA  235 (469)
Q Consensus       162 ~dv~~d~~l~k~il~~G~g~~~p~----~V~-~~~l~-~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~  235 (469)
                      .+++.++++.++++++|+|...+.    +|+ .+++. +|++||++ +.++.|++|.+|.+.+++||+.+|.+|++||++
T Consensus        20 ~~v~~~~gl~~~vl~~G~g~~~~~gd~V~v~Y~g~l~~~G~~fdss-~~~~~p~~f~lG~g~~i~G~e~aL~gm~~Ge~~   98 (134)
T 3b7x_A           20 LDISGDRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSN-YFRKTPRLMKLGEDITLWGMELGLLSMRRGELA   98 (134)
T ss_dssp             EESSSSSSEEEEEEECCEEEECCTTCEEEEEEEEECTTCSSCSEEC--------CEEC-CCCCCHHHHHHHHTCEETCEE
T ss_pred             ceeeCCCCEEEEEEEcCCCCCCCCCCEEEEEEEEEECCCCeEEEec-CCCCCCEEEEcCCcchhHHHHHHHhCCCCCCEE
Confidence            456678899999999999986555    455 88888 69999997 666789999999999999999999999999999


Q ss_pred             EEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          236 LVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       236 ~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      .|+|||++|||+.+.+   +.||||++|+|+|+|+++.
T Consensus        99 ~v~ip~~~aYG~~~~~---~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           99 RFLFKPNYAYGTLGCP---PLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             EEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             EEEECHHHCcCCCCCC---CCcCcCCeEEEEEEEEEEe
Confidence            9999999999998765   4699999999999999885

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.77  E-value=6.5e-19  Score=144.68  Aligned_cols=101  Identities=32%  Similarity=0.552  Sum_probs=88.5

Q ss_pred             hhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCC
Q 036950          169 KVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPE  242 (469)
Q Consensus       169 ~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~  242 (469)
                      ++.++++++|+|...|.     +|+ .+++.||++||++ +.++.|++|.+|.+.+++||+.+|.+|++||++.|.|||.
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s-~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~   79 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSS-RDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPD   79 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEH-HHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEec-CCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHH
Confidence            36678999999976454     455 8888899999998 5445899999999999999999999999999999999999


Q ss_pred             CccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          243 YAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       243 ~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      ++||+.+.+   +.|||+++|+|+|+|+++.
T Consensus        80 ~ayG~~~~~---~~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           80 YAYGATGHP---GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             HccCCCCCC---CCcCCCCeEEEEEEEEEeC
Confidence            999998765   4699999999999999873

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.77  E-value=8.3e-19  Score=154.73  Aligned_cols=115  Identities=24%  Similarity=0.354  Sum_probs=98.6

Q ss_pred             cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEE
Q 036950          166 KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTI  239 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i  239 (469)
                      .++++.++++++|+|...|.     +|+ .|++.||++||++ +.++.|++|.+|  .+|+||+.+|.+|++||++.|+|
T Consensus        35 ~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss-~~~g~p~~f~lg--~vI~G~eeaL~gMk~Ge~~~~~I  111 (167)
T 1jvw_A           35 LPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSS-RERGKPTTFRPN--EVIKGWTEALQLMREGDRWRLFI  111 (167)
T ss_dssp             CTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEH-HHHTSCEEECGG--GSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeec-cccCCCEEEEeC--chhHHHHHHHcCCCCCCEEEEEE
Confidence            46789999999999986354     556 8999999999998 555689999995  89999999999999999999999


Q ss_pred             cCCCccCCCCCcccccCCCCCceEEEEEEEeeeeecccccCCChHHHHH
Q 036950          240 EPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIE  288 (469)
Q Consensus       240 ~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~~~~~~l~~~e~~~  288 (469)
                      ||.+|||+.+..   +.||||++|+|+|+|+++.+.  .|.++.+|.-+
T Consensus       112 p~~laYG~~g~~---~~Ipp~s~LiF~VeL~~i~~~--~~~~~~~e~~~  155 (167)
T 1jvw_A          112 PYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDG--GKGRTAEEVDE  155 (167)
T ss_dssp             CGGGTTTTTCSS---SSSCTTCCEEEEEEEEEEGGG--CCSCBHHHHHH
T ss_pred             CchhhCCCCCCC---CCcCCCCeEEEEEEEEEEEcC--CCCCCHHHHHH
Confidence            999999998864   479999999999999999853  56677776543

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.77  E-value=6.8e-19  Score=150.53  Aligned_cols=109  Identities=42%  Similarity=0.611  Sum_probs=95.4

Q ss_pred             ccc--cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcE
Q 036950          163 DIT--KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEV  234 (469)
Q Consensus       163 dv~--~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~  234 (469)
                      |++  .++++.++++++|+|...|.     +|+ .+++.||++||++ +.++.|++|.+|.+.+++||+.+|.+|++||+
T Consensus         7 dv~~~~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss-~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~   85 (135)
T 1r9h_A            7 DITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSS-RDRGDQFSFNLGRGNVIKGWDLGVATMTKGEV   85 (135)
T ss_dssp             ECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEH-HHHTSCEEEETTTTSSCHHHHHHHTTCCBTCE
T ss_pred             ecccCCCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEec-CcCCCCEEEEeCCCCccHHHHHHHhcCCCCCE
Confidence            444  67899999999999975454     455 8888899999997 44468999999999999999999999999999


Q ss_pred             EEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeeeec
Q 036950          235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKE  275 (469)
Q Consensus       235 ~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~  275 (469)
                      +.|+|||.+|||+.+.+   +.||++++|+|+|+|++|...
T Consensus        86 ~~v~ip~~~aYG~~g~~---~~Ip~~~~l~f~v~l~~i~~~  123 (135)
T 1r9h_A           86 AEFTIRSDYGYGDAGSP---PKIPGGATLIFEVELFEWSAE  123 (135)
T ss_dssp             EEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC-
T ss_pred             EEEEEChHHcCCCCCCC---CCcCcCCcEEEEEEEEEeecC
Confidence            99999999999998865   479999999999999999753

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.77  E-value=3.1e-18  Score=157.88  Aligned_cols=101  Identities=32%  Similarity=0.578  Sum_probs=93.8

Q ss_pred             cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950           49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK  124 (469)
Q Consensus        49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip  124 (469)
                      +++|+.|+++++|+| ..|..||.|+|||++++.||++|+++    .|+.|.+  +++++||+++|.+|++|+++.|.||
T Consensus       119 ~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~IP  195 (224)
T 1q6h_A          119 SSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIP  195 (224)
T ss_dssp             CTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEEEC
Confidence            678999999999999 79999999999999998899999988    5888887  5899999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          125 PQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       125 ~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      |+++||..+.+     + ||+|++|+|+|+|+++
T Consensus       196 ~~laYG~~g~~-----~-IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          196 PELAYGKAGVP-----G-IPPNSTLVFDVELLDV  223 (224)
T ss_dssp             GGGTTTTTCBT-----T-BCTTCCEEEEEEEEEE
T ss_pred             chhhcCcCCCC-----C-CCCCCEEEEEEEEEEe
Confidence            99999998763     3 9999999999999986

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.76  E-value=2.4e-18  Score=146.00  Aligned_cols=103  Identities=31%  Similarity=0.490  Sum_probs=89.8

Q ss_pred             cchhhhhh--hhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEE
Q 036950          166 KDKKVLKK--ILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALV  237 (469)
Q Consensus       166 ~d~~l~k~--il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~  237 (469)
                      .++++.++  ++++|+|...|.     +|+ .+++.||++||++ +.++.|++|.+|.+.+++||+.+|.+|++||++.|
T Consensus        20 ~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss-~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v   98 (130)
T 2lgo_A           20 GSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSS-RSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALF   98 (130)
T ss_dssp             SSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECT-TTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEE
T ss_pred             CCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEcc-CcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEE
Confidence            35667666  999999986344     444 8888899999998 66668999999999999999999999999999999


Q ss_pred             EEcCCCccCCCCCcccccCCCCCceEEEEEEEeee
Q 036950          238 TIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF  272 (469)
Q Consensus       238 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~  272 (469)
                      .|||.++||+.+.+   +.|||+++|+|+|+|+++
T Consensus        99 ~ip~~~aYG~~~~~---~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           99 TIPYQLAYGERGYP---PVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EECTTTSTTTTCCS---TTSCSSCCEEEEEEEEEC
T ss_pred             EECcHHHCCCCCCC---CCcCCCCeEEEEEEEEEC
Confidence            99999999998765   469999999999999875

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.76  E-value=2.7e-18  Score=146.25  Aligned_cols=103  Identities=33%  Similarity=0.510  Sum_probs=90.5

Q ss_pred             cchhhhhhhhhcCCCCCCCc----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEc
Q 036950          166 KDKKVLKKILKEGDGYENQM----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIE  240 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~  240 (469)
                      .++++.++++++|+|.....    +|+ .+++.||++||++ +.++.|++|.+|.+.+++||+.+|.+|++||++.|.||
T Consensus        26 ~~~gl~~~~l~~G~G~~~~~gd~V~v~Y~g~~~dG~~fdss-~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~ip  104 (133)
T 2y78_A           26 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSS-KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP  104 (133)
T ss_dssp             CTTSCEEEEEECCSSCBCCTTSEEEEEEEEEETTSCEEEET-TTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEEEC
T ss_pred             CCCCEEEEEEEcCCCCCCCCCCEEEEEEEEEECCCCEEecc-CcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEEC
Confidence            46789999999999964333    445 8888899999998 66678999999999999999999999999999999999


Q ss_pred             CCCccCCCCCcccccCCCCCceEEEEEEEeee
Q 036950          241 PEYAFGSCSSEKELAIVPANSTLFYEVELVSF  272 (469)
Q Consensus       241 ~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~  272 (469)
                      |.++||+.+..   +.|||+++|+|+|+|+++
T Consensus       105 ~~~aYG~~~~~---~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          105 PQLGYGARGAG---GVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             GGGTTTTTCBT---TTBCTTCCEEEEEEEEEC
T ss_pred             cHHhCCCCCCC---CCCCCCCeEEEEEEEEEC
Confidence            99999998765   469999999999999875

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.75  E-value=3.6e-18  Score=145.06  Aligned_cols=106  Identities=39%  Similarity=0.614  Sum_probs=90.1

Q ss_pred             ccchhhhhhhhhcC-CCC-CCCc-----eEE-EEEe-cCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEE
Q 036950          165 TKDKKVLKKILKEG-DGY-ENQM-----MVQ-WFKL-HDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVA  235 (469)
Q Consensus       165 ~~d~~l~k~il~~G-~g~-~~p~-----~V~-~~~l-~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~  235 (469)
                      +.++.++++++++| .|. ..|.     +|+ .+++ .||++||++ +.++.|++|.+|.+.+++||+.+|.+|++||++
T Consensus        13 ~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s-~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge~~   91 (129)
T 2vn1_A           13 TADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSS-FDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC   91 (129)
T ss_dssp             STTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEG-GGTTCCEEEETTSSSSCHHHHHHHTTCCTTCEE
T ss_pred             CCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEec-CCCCccEEEEeCCCCcCHHHHHHHhCCCCCCEE
Confidence            45566777899977 552 2333     455 8888 799999998 555789999999999999999999999999999


Q ss_pred             EEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeeee
Q 036950          236 LVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIK  274 (469)
Q Consensus       236 ~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~  274 (469)
                      .|+|||.+|||+.+.+   +.||||++|+|+|+|+++.+
T Consensus        92 ~v~ip~~~aYG~~~~~---~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           92 LVRIESMYGYGDEGCG---ESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             EEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEChHHcCCCCCCC---CCcCCCCeEEEEEEEEEEec
Confidence            9999999999998764   46999999999999999875

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.75  E-value=2.1e-17  Score=151.51  Aligned_cols=188  Identities=22%  Similarity=0.274  Sum_probs=124.7

Q ss_pred             CCCCCCEEEEEEEEEecCCcEEeccccEEEEECCCccchhHHHHHhccc--CCcEEEEEEcCCccccCCCCCCCCCCCCC
Q 036950           66 NPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMK--KGEKVLLTVKPQYAFGKNGRPATGDEDAV  143 (469)
Q Consensus        66 ~~~~gd~V~i~y~~~~~~G~~~~~t~~~~~~ig~~~~~~gle~aL~gmk--~Ge~~~~~ip~~~ayg~~~~~~~~~~~~i  143 (469)
                      .|..++.+.+...  . +|.      ...|.+....-+.-|-.+...+.  .-.+.+|............+..+    ..
T Consensus        15 ~~~~~~~i~ikv~--~-~~~------~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L----~~   81 (209)
T 3uf8_A           15 EVKPETHINLKVS--D-GSS------EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL----DM   81 (209)
T ss_dssp             ---CCSEEEEEEE--C-SSC------EEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTT----TC
T ss_pred             eeCCCCcEEEEEE--c-CCC------EEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHh----hh
Confidence            4556666655553  2 332      23466655544444444433222  23345555544433333222211    12


Q ss_pred             CCCceEEEeEeeeeeccccccccchhhhhhhhhcCCCCCCCc----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCcc
Q 036950          144 PSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDGYENQM----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQV  218 (469)
Q Consensus       144 p~~~~l~~~v~l~~~~~~~dv~~d~~l~k~il~~G~g~~~p~----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v  218 (469)
                      ..++.+..-  +...........++++.++++++|+|.....    +|+ .+++.||++||++ +.++.|++|.+|.+.+
T Consensus        82 ed~d~I~~~--~eq~Gg~t~~~~~sGl~~~vl~~G~G~~~~~gd~V~v~Y~g~l~dG~~fdss-~~~~~P~~f~lG~g~v  158 (209)
T 3uf8_A           82 EDNDIIEAH--REQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSS-KDRNDPFAFVLGGGMV  158 (209)
T ss_dssp             CTTEEEEEE--CSCTTCCCCEECTTSCEEEEEECCCSCBCCTTCEEEEEEEEEETTSCEEEES-GGGTCCEEEETTSSSS
T ss_pred             cccccchhh--ccccccccccCCCCceEEEEEEcCCCCcCCCCCEEEEEEEEEECCCCEEEEc-cccCCCEEEEeCCCcc
Confidence            234444322  2222222233457899999999999975333    455 8899999999998 6668899999999999


Q ss_pred             chhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeee
Q 036950          219 IDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF  272 (469)
Q Consensus       219 ~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~  272 (469)
                      ++||+.+|.+|++||++.|+|||.+|||+.+..   +.|||+++|+|+|+|+++
T Consensus       159 i~G~eeaL~gM~~Ge~~~v~Ipp~~aYG~~g~~---~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          159 IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAA---GVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             CHHHHHHHTTCBTTCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEC
T ss_pred             chhHHHHHhCCCCCCEEEEEECcHHhCCCCCCC---CCcCCCCeEEEEEEEEEC
Confidence            999999999999999999999999999998875   469999999999999975

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.75  E-value=3.8e-18  Score=144.13  Aligned_cols=106  Identities=22%  Similarity=0.350  Sum_probs=91.2

Q ss_pred             ccchhhhhhhhhcCCCC-CCCc-----eEE-EEEec-CCcEEEecCCC--CCCcEEEEcCCCccchhHHHHHhccccCcE
Q 036950          165 TKDKKVLKKILKEGDGY-ENQM-----MVQ-WFKLH-DGTVFVKKGHD--EEPLFEFKIDEEQVIDGLDRAVKTMKKGEV  234 (469)
Q Consensus       165 ~~d~~l~k~il~~G~g~-~~p~-----~V~-~~~l~-~g~~~d~~~~~--~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~  234 (469)
                      ..++++.++++++|.+. ..+.     +|+ .++++ ||++||++ +.  .+.|++|.+|.+.+++||+.+|.+|++||+
T Consensus         9 ~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss-~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   87 (125)
T 4dip_A            9 IPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHST-HKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEK   87 (125)
T ss_dssp             CCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEH-HHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTCE
T ss_pred             ECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEc-ccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCCE
Confidence            45678999999999832 2333     455 89998 99999998 42  468999999999999999999999999999


Q ss_pred             EEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeeeec
Q 036950          235 ALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKE  275 (469)
Q Consensus       235 ~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~  275 (469)
                      +.|.|||.+|||+.+..    .|||+++|+|+|+|+++.+.
T Consensus        88 ~~~~ip~~~aYG~~g~~----~Ip~~~~l~f~vel~~i~~~  124 (125)
T 4dip_A           88 RKLIIPPALGYGKEGKG----KIPPESTLIFNIDLLEIRNG  124 (125)
T ss_dssp             EEEEECGGGTTTTTCBT----TBCTTCCEEEEEEEEEEECC
T ss_pred             EEEEEChHHhcCCCCCC----CCCCCCeEEEEEEEEEEEcC
Confidence            99999999999998753    69999999999999999764

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.75  E-value=5.6e-18  Score=137.77  Aligned_cols=92  Identities=25%  Similarity=0.446  Sum_probs=85.2

Q ss_pred             CCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCC
Q 036950           65 ENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDE  140 (469)
Q Consensus        65 ~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~  140 (469)
                      ..++.||.|++||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|+++.|.|||+++||+.+.+     
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~-----   78 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP-----   78 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBT-----
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCC-----
Confidence            57899999999999998899999987    689999999999999999999999999999999999999998764     


Q ss_pred             CCCCCCceEEEeEeeeeeccc
Q 036950          141 DAVPSNANLHITLEMVSWKTV  161 (469)
Q Consensus       141 ~~ip~~~~l~~~v~l~~~~~~  161 (469)
                      +.||++++++|+|+|+++...
T Consensus        79 ~~Ip~~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           79 PKIPGGATLVFEVELLKIERR   99 (102)
T ss_dssp             TTBCTTCCEEEEEEEEEEGGG
T ss_pred             CCcCcCCeEEEEEEEEEeccc
Confidence            469999999999999998763

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.73  E-value=1.1e-17  Score=153.05  Aligned_cols=99  Identities=24%  Similarity=0.389  Sum_probs=88.7

Q ss_pred             cchhhhhhhhhcCCCCCCCc----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEc
Q 036950          166 KDKKVLKKILKEGDGYENQM----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIE  240 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~  240 (469)
                      .++++.++++++|+|.....    +|+ .|++.||++||++    +.|++|.+|  .+|+||+.+|.+|++|+++.|+||
T Consensus       115 ~~sGl~y~vl~~G~G~~p~~gd~V~V~Y~g~l~dG~vfDss----~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~IP  188 (219)
T 3oe2_A          115 LADGILMTELTPGTGPKPDANGRVEVRYVGRLPDGKIFDQS----TQPQWFRLD--SVISGWTSALQNMPTGAKWRLVIP  188 (219)
T ss_dssp             CGGGCEEEEEECCCSCCCCTTSEEEEEEEEECTTSCEEEEC----SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCeEEEEEecCCCccCCCCCEEEEEEEEEECCCCEeecc----CCcEEEEec--chhHHHHHHHhCCCCCCEEEEEEC
Confidence            47889999999999964322    455 8999999999997    789999998  899999999999999999999999


Q ss_pred             CCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          241 PEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       241 ~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      |.+|||+.+..   +.|||+++|+|+|+|+++.
T Consensus       189 p~lAYG~~g~~---~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          189 SDQAYGAEGAG---DLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             GGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             chhcCCCCCCC---CCCCCCCeEEEEEEEEEEe
Confidence            99999998875   3699999999999999986

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.73  E-value=1.2e-17  Score=139.48  Aligned_cols=103  Identities=29%  Similarity=0.443  Sum_probs=90.0

Q ss_pred             ccccchhhhhhhhhcCCCCC-CCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEE
Q 036950          163 DITKDKKVLKKILKEGDGYE-NQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVA  235 (469)
Q Consensus       163 dv~~d~~l~k~il~~G~g~~-~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~  235 (469)
                      +++.++++.++++++|+|.. .|.     +|+ .+++.||++|+++     .|++|.+|.+.+++||+.+|.+|++||++
T Consensus         8 ~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~-----~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~   82 (118)
T 2awg_A            8 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE-----PELVFTLGDCDVIQALDLSVPLMDVGETA   82 (118)
T ss_dssp             ESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE-----EEEEEETTSSCSCHHHHHHGGGSCTTCEE
T ss_pred             EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC-----CCEEEEECCCChhHHHHHHHhCCCCCCEE
Confidence            45566679999999999962 343     455 8888899999984     79999999999999999999999999999


Q ss_pred             EEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          236 LVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       236 ~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      .|.|||++|||+.+.+   +.|||+++|+|+|+|+++.
T Consensus        83 ~~~ip~~~ayG~~~~~---~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           83 MVTADSKYCYGPQGRS---PYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             EEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             EEEEChHHccCCCCCC---CccCCCCeEEEEEEEEEec
Confidence            9999999999998765   4699999999999999885

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.73  E-value=1.3e-17  Score=145.52  Aligned_cols=105  Identities=28%  Similarity=0.416  Sum_probs=90.2

Q ss_pred             cccchhhhhhhhhcCCCC-CCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEE
Q 036950          164 ITKDKKVLKKILKEGDGY-ENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVAL  236 (469)
Q Consensus       164 v~~d~~l~k~il~~G~g~-~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~  236 (469)
                      ++.++.+.++++++|+|. ..|.     +|+ .+++.||++||++     .|++|.+|.+.+++||+.+|.+|++||++.
T Consensus        39 ~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~-----~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~  113 (157)
T 2jwx_A           39 ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE-----PELVFTLGDCDVIQALDLSVPLMDVGETAM  113 (157)
T ss_dssp             SSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEE-----EEEEEETTTTSSCHHHHHHTTTSCTTCEEE
T ss_pred             ECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecC-----CCEEEEeCCCChhHHHHHHHcCCCCCCEEE
Confidence            344444589999999996 2343     455 8898999999984     799999999999999999999999999999


Q ss_pred             EEEcCCCccCCCC-CcccccCCCCCceEEEEEEEeeeeecc
Q 036950          237 VTIEPEYAFGSCS-SEKELAIVPANSTLFYEVELVSFIKEK  276 (469)
Q Consensus       237 ~~i~~~~~yg~~~-~~~~~~~ip~~~~l~f~vel~~~~~~~  276 (469)
                      |+||++++||+.+ ..   +.|||+++|+|+|+|+++.+..
T Consensus       114 v~IP~~~aYG~~g~~~---~~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A          114 VTADSKYCYGPQGSRS---PYIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             EEECGGGTTTTTCCSS---SCCCTTCCEEEEEEEEEEEECS
T ss_pred             EEECchhcCCcccccC---CCcCCCCeEEEEEEEEEEEccc
Confidence            9999999999988 43   4699999999999999998754

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=8.8e-18  Score=143.61  Aligned_cols=113  Identities=27%  Similarity=0.389  Sum_probs=95.9

Q ss_pred             ccccchhhhhhhhhcCCCC-CCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEE
Q 036950          163 DITKDKKVLKKILKEGDGY-ENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVA  235 (469)
Q Consensus       163 dv~~d~~l~k~il~~G~g~-~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~  235 (469)
                      +++.++++.++++++|+|. ..|.     +|+ .+++.||++||+     ..|++|.+|.+.+++||+.+|.+|++||++
T Consensus        12 ~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds-----~~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~   86 (135)
T 2d9f_A           12 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE-----EPELVFTLGDCDVIQALDLSVPLMDVGETA   86 (135)
T ss_dssp             ESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEE-----EEEEEEETTSCCSCTTTTTTGGGSCTTCEE
T ss_pred             EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEec-----CCCEEEEeCCCChhHHHHHHHhCCCCCCEE
Confidence            4455666999999999996 2333     455 888889999997     379999999999999999999999999999


Q ss_pred             EEEEcCCCccCCCC-CcccccCCCCCceEEEEEEEeeeeecccccCCCh
Q 036950          236 LVTIEPEYAFGSCS-SEKELAIVPANSTLFYEVELVSFIKEKESWDMNT  283 (469)
Q Consensus       236 ~~~i~~~~~yg~~~-~~~~~~~ip~~~~l~f~vel~~~~~~~~~~~l~~  283 (469)
                      .|.|||+++||+.+ ..   +.|||+++|+|+|+|+++...++...++.
T Consensus        87 ~v~ip~~~aYG~~~~~~---~~Ip~~~~l~f~vel~~v~~~~~~e~~s~  132 (135)
T 2d9f_A           87 MVTADSKYCYGPQGSRS---PYIPPHAALCLEVTLKTAVDRPDLEMSGP  132 (135)
T ss_dssp             EEEECHHHHTCTTCCSS---SCCCTTCCEEEEEEEEEEESSCSSSSCCC
T ss_pred             EEEEChhHccCcCCcCC---CccCCCCeEEEEEEEEEeecCCchhhcCc
Confidence            99999999999987 43   47999999999999999998766555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.70  E-value=2e-17  Score=145.30  Aligned_cols=132  Identities=23%  Similarity=0.329  Sum_probs=108.9

Q ss_pred             hHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHH
Q 036950          283 TQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD---SSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAE  359 (469)
Q Consensus       283 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~---~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai  359 (469)
                      .+++++.+..+++.|+.+|+.|+|..|+..|++|+.+++..   ....++++....+....+|+|+|.||+++|+|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            46788999999999999999999999999999999986532   123345666778888999999999999999999999


Q ss_pred             HHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036950          360 KLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNI  416 (469)
Q Consensus       360 ~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~m  416 (469)
                      .+|++||+++                       +.+|+++++++|+|..    .++..+..++.+++++.++++++|++|
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~----~~~~~l~~~~~~~~~~~~~~k~~~~~~  159 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS----VVAREMKIVTERRAEKKADSRVTYSKM  159 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH----HHHHHHHHHHHHHHHHTTSSCC-----
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998                       7889999999999972    578999999999999999999999999


Q ss_pred             hh
Q 036950          417 FA  418 (469)
Q Consensus       417 f~  418 (469)
                      |+
T Consensus       160 f~  161 (162)
T 3rkv_A          160 FQ  161 (162)
T ss_dssp             --
T ss_pred             cC
Confidence            96

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.70  E-value=1.6e-17  Score=140.90  Aligned_cols=106  Identities=24%  Similarity=0.329  Sum_probs=90.0

Q ss_pred             cchhhhhhhhhcCCCCCCCc----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhc------cccCcE
Q 036950          166 KDKKVLKKILKEGDGYENQM----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKT------MKKGEV  234 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~------m~~Ge~  234 (469)
                      .++++.++++++|+|.....    +|+ .+++.||++||++ +.++.|++|.+|.+.+++||+.+|.+      |++||+
T Consensus        10 ~~~Gl~~~~l~~G~G~~~~~gd~V~v~Y~g~~~dG~~fdss-~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge~   88 (129)
T 1u79_A           10 SPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSS-YNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGK   88 (129)
T ss_dssp             CTTSCEEEEEECCSSCBCCTTCEEEEEEEEECTTSCEEEEH-HHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTCE
T ss_pred             CCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEECCCCEEEec-CCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCCE
Confidence            35689999999999974333    455 8888899999998 55568999999999999999999998      999999


Q ss_pred             EEEEEcCCCccCCCCCcc--cccCCCCCceEEEEEEEeee
Q 036950          235 ALVTIEPEYAFGSCSSEK--ELAIVPANSTLFYEVELVSF  272 (469)
Q Consensus       235 ~~~~i~~~~~yg~~~~~~--~~~~ip~~~~l~f~vel~~~  272 (469)
                      +.|.|||.++||+.+...  ..+.||||++|+|+|+|+++
T Consensus        89 ~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           89 RTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             EEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            999999999999987531  01369999999999999976

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.70  E-value=3e-17  Score=150.26  Aligned_cols=103  Identities=26%  Similarity=0.379  Sum_probs=90.3

Q ss_pred             cchhhhhhhhhcCCCCCCCc----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEc
Q 036950          166 KDKKVLKKILKEGDGYENQM----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIE  240 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~  240 (469)
                      .++++.++++++|+|.....    +|+ .|++.||++||++ +.++.|++|.+|  .+|+||+.+|.+|++|+++.|+||
T Consensus       104 ~~sGl~y~vl~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss-~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~IP  180 (213)
T 1fd9_A          104 LPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDST-EKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIYVP  180 (213)
T ss_dssp             CTTSCEEEEEECCCSCCCCTTCEEEEEEEEEETTSCEEEEH-HHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCccEEEEEecCCCccCCCCCEEEEEEEEEECCCCEEeec-cccCCCEEEEcC--chhhHHHHHHcCCCCCCEEEEEEC
Confidence            46789999999999964322    455 8999999999998 555789999995  899999999999999999999999


Q ss_pred             CCCccCCCCCcccccCCCCCceEEEEEEEeeeee
Q 036950          241 PEYAFGSCSSEKELAIVPANSTLFYEVELVSFIK  274 (469)
Q Consensus       241 ~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~  274 (469)
                      |.++||+.+..   +.|||+++|+|+|+|+++.+
T Consensus       181 ~~laYG~~g~~---~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          181 SGLAYGPRSVG---GPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             GGGTTTTCCCS---SSCCTTCCEEEEEEEEEEEC
T ss_pred             chhccCccCCC---CCCCCCCeEEEEEEEEEEEc
Confidence            99999998764   46999999999999999874

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.67  E-value=1.2e-16  Score=147.36  Aligned_cols=101  Identities=29%  Similarity=0.467  Sum_probs=88.5

Q ss_pred             cchhhhhhhhhcCCCCCCCc----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEc
Q 036950          166 KDKKVLKKILKEGDGYENQM----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIE  240 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~  240 (469)
                      .++++.++++++|+|.....    +|+ .|++.||++||++ +.++.|++|.+|  .+|+||+.+|.+|++||++.|+||
T Consensus       119 ~~sGl~y~vl~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss-~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~IP  195 (224)
T 1q6h_A          119 SSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNS-YTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIP  195 (224)
T ss_dssp             CTTSCEEEEEECCSSCCCCTTCEEEEEEEEEETTSCEEEEG-GGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCceEEEEEecccCccccCCCEEEEEEEEEeCCCCEEeec-cccCCCEEEEcC--CcchhHHHHHcCCCCCCEEEEEEC
Confidence            35789999999999974332    455 8999999999998 666789999995  899999999999999999999999


Q ss_pred             CCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          241 PEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       241 ~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      |+++||+.+.+    .||||++|+|+|+|+++.
T Consensus       196 ~~laYG~~g~~----~IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          196 PELAYGKAGVP----GIPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             GGGTTTTTCBT----TBCTTCCEEEEEEEEEEC
T ss_pred             chhhcCcCCCC----CCCCCCEEEEEEEEEEeC
Confidence            99999998764    399999999999999873

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.66  E-value=2.3e-16  Score=128.15  Aligned_cols=86  Identities=30%  Similarity=0.465  Sum_probs=77.7

Q ss_pred             eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEE
Q 036950          186 MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLF  264 (469)
Q Consensus       186 ~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~  264 (469)
                      +|+ .+++.||++||++ +.++.|++|.+|.+.+++||+.+|.+|++||++.|.|||++|||+.+..   +.||++++|+
T Consensus        13 ~v~y~~~~~dG~~~d~s-~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~---~~Ip~~~~l~   88 (102)
T 2pbc_A           13 HMHYTGKLEDGTEFDSS-LPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP---PKIPGGATLV   88 (102)
T ss_dssp             EEEEEEECTTSCEEEES-TTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBT---TTBCTTCCEE
T ss_pred             EEEEEEEECCCCEEEeC-CCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCC---CCcCcCCeEE
Confidence            455 7888899999998 6667899999999999999999999999999999999999999998764   4699999999


Q ss_pred             EEEEEeeeeec
Q 036950          265 YEVELVSFIKE  275 (469)
Q Consensus       265 f~vel~~~~~~  275 (469)
                      |+|+|+++.+.
T Consensus        89 f~v~l~~v~~~   99 (102)
T 2pbc_A           89 FEVELLKIERR   99 (102)
T ss_dssp             EEEEEEEEGGG
T ss_pred             EEEEEEEeccc
Confidence            99999998754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.62  E-value=7.6e-15  Score=133.14  Aligned_cols=159  Identities=32%  Similarity=0.456  Sum_probs=116.1

Q ss_pred             eEEEEEEEeeeeecccccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHH
Q 036950          262 TLFYEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDE-EKQQAKVLKIT  340 (469)
Q Consensus       262 ~l~f~vel~~~~~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e-~~~~~~~l~~~  340 (469)
                      .......+..+.+.++.|+|+.+++...+..++..|+.+|+.|+|.+|+..|.+++.+.+..+..... .......+...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            34445566778899999999999999999999999999999999999999999999998876543322 23334556678


Q ss_pred             hHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 036950          341 CNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKL  397 (469)
Q Consensus       341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~  397 (469)
                      ++.|+|.||+++++|++|+.+|+++|+++                       +..|+++++++|++.     .+...+..
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~  164 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL-----DIRNSYEL  164 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-----HHHHHHHH
Confidence            99999999999999999999999999998                       678999999999999     99999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhchh
Q 036950          398 LKEKVREYNKKDVQFYGNIFAKINKLEQ  425 (469)
Q Consensus       398 ~~~~~~~~~~~e~~~~~~mf~~~~~~~~  425 (469)
                      +...+.+..+.+++.|++||++.....+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~  192 (198)
T 2fbn_A          165 CVNKLKEARKKDKLTFGGMFDKGPLYEE  192 (198)
T ss_dssp             HHHHHHHHHC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhc
Confidence            9999999999999999999998665543

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.55  E-value=9.4e-15  Score=120.38  Aligned_cols=83  Identities=12%  Similarity=0.201  Sum_probs=73.3

Q ss_pred             CCCCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCC
Q 036950           65 ENPKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDA  142 (469)
Q Consensus        65 ~~~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~  142 (469)
                      ..++.||.|+++|++++ ||++|+++  .|+.|.+|.+++++||+++|.||++|+++.|.||+...||..+.        
T Consensus        28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~--------   98 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIV-DNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL--------   98 (113)
T ss_dssp             -CCCSSEEEEEEEEEEE-TTEECSTTCCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG--------
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEcccCCccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCC--------
Confidence            57899999999999998 99999988  89999999999999999999999999999999973333887543        


Q ss_pred             CCCCceEEEeEeeeee
Q 036950          143 VPSNANLHITLEMVSW  158 (469)
Q Consensus       143 ip~~~~l~~~v~l~~~  158 (469)
                        ++++++|+|+|+++
T Consensus        99 --~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           99 --QSKPVTFEVVLKAI  112 (113)
T ss_dssp             --GSCCCEEEEEECCB
T ss_pred             --CCCEEEEEEEEEEE
Confidence              57899999999876

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.54  E-value=2.5e-14  Score=126.32  Aligned_cols=71  Identities=25%  Similarity=0.386  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEEEEEecCCcEEecc---ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCC
Q 036950           67 PKDLDEVFVKYEVRLEDGTLISKS---DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPAT  137 (469)
Q Consensus        67 ~~~gd~V~i~y~~~~~~G~~~~~t---~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~  137 (469)
                      ++.||.|+++|++++.+|++|++|   +|+.|.+|.+++++||+++|.||++|+++.|.|||+.|||+.+...+
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~v   76 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLV   76 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCTTSE
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCChhhE
Confidence            678999999999998899999988   69999999999999999999999999999999999999999866543

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.50  E-value=2.4e-14  Score=131.82  Aligned_cols=70  Identities=26%  Similarity=0.399  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEEEEEecCCcEEecc-----------------ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccc
Q 036950           67 PKDLDEVFVKYEVRLEDGTLISKS-----------------DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAF  129 (469)
Q Consensus        67 ~~~gd~V~i~y~~~~~~G~~~~~t-----------------~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ay  129 (469)
                      ++.||.|++||++++ ||++|++|                 .|+.|.+|.|++++||+++|.||++|+++.|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            678999999999999 99999987                 289999999999999999999999999999999999999


Q ss_pred             cCCCCCCC
Q 036950          130 GKNGRPAT  137 (469)
Q Consensus       130 g~~~~~~~  137 (469)
                      |+++...+
T Consensus        81 Ge~~~~lv   88 (231)
T 3prb_A           81 GKRDPSKI   88 (231)
T ss_dssp             CCCCGGGE
T ss_pred             CCCChHHE
Confidence            99876544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.50  E-value=9.9e-14  Score=120.80  Aligned_cols=120  Identities=15%  Similarity=0.159  Sum_probs=99.2

Q ss_pred             CChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHH
Q 036950          281 MNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEK  360 (469)
Q Consensus       281 l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~  360 (469)
                      |.+=.....|..+++.||.+|+.|+|++|+.+|++||.+.+..+...   .....+....+|+|+|.|+.++|+|++|+.
T Consensus         2 ~~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~   78 (159)
T 2hr2_A            2 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALH   78 (159)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            33333467899999999999999999999999999999998743321   001233445699999999999999999999


Q ss_pred             HHHHHHhh-------c---------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          361 LCSKVLEL-------D---------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       361 ~~~~al~~-------d---------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                      +|++||++       +                           +.+|++|++++|++.     .+.+++..+++++++..
T Consensus        79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~-----~~~~~~~~~~~~~~~~~  153 (159)
T 2hr2_A           79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK-----GETPGKERMMEVAIDRI  153 (159)
T ss_dssp             HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC-----SCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHHH
Confidence            99999999       5                           678999999999999     89999999998887766


Q ss_pred             HH
Q 036950          407 KK  408 (469)
Q Consensus       407 ~~  408 (469)
                      ++
T Consensus       154 ~k  155 (159)
T 2hr2_A          154 AQ  155 (159)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.49  E-value=9e-14  Score=125.21  Aligned_cols=72  Identities=25%  Similarity=0.376  Sum_probs=67.5

Q ss_pred             CCCCCEEEEEEEEEecCCcEEecc---ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCC
Q 036950           67 PKDLDEVFVKYEVRLEDGTLISKS---DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATG  138 (469)
Q Consensus        67 ~~~gd~V~i~y~~~~~~G~~~~~t---~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~  138 (469)
                      ++.||.|+++|++++.+|++|++|   +|+.|.+|.++++|+|+++|.+|++|+++.|.|||+.|||+++...+.
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~lV~   77 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLVQ   77 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTTCE
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhhEE
Confidence            678999999999998899999988   699999999999999999999999999999999999999998876654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.48  E-value=2.5e-13  Score=114.38  Aligned_cols=91  Identities=33%  Similarity=0.485  Sum_probs=84.1

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      +.|+.++++||.+|+.|+|++|+..|++||...+.+               ..+|.|+|.||+++|+|++|+.+|++||+
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~   75 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---------------AILYSNRAACLTKLMEFQRALDDCDTCIR   75 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence            357888999999999999999999999999988765               77899999999999999999999999999


Q ss_pred             hc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 036950          368 LD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLL  398 (469)
Q Consensus       368 ~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~  398 (469)
                      ++                       +.+|+++++++|+|.     +++..|..+
T Consensus        76 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~a~~~l~~~  124 (126)
T 4gco_A           76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE-----EAREGVRNC  124 (126)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH-----HHHHHHHHh
Confidence            98                       789999999999999     888887765

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.48  E-value=1.3e-13  Score=119.71  Aligned_cols=72  Identities=24%  Similarity=0.374  Sum_probs=67.1

Q ss_pred             CCCCCCCEEEEEEEEEec-CCcEEecc---ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCC
Q 036950           65 ENPKDLDEVFVKYEVRLE-DGTLISKS---DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPA  136 (469)
Q Consensus        65 ~~~~~gd~V~i~y~~~~~-~G~~~~~t---~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~  136 (469)
                      ..++.||.|++||++++. +|++|++|   .|+.|.+|.+++++||+++|.||++|+++.|.|||+.|||+.+...
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~~~~   80 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYESSY   80 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCSCE
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCCcce
Confidence            468899999999999987 99999988   6999999999999999999999999999999999999999987643

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.46  E-value=4.7e-14  Score=123.91  Aligned_cols=69  Identities=25%  Similarity=0.482  Sum_probs=65.7

Q ss_pred             CCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCC
Q 036950           66 NPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGR  134 (469)
Q Consensus        66 ~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~  134 (469)
                      .++.||.|++||++++.||++|++|    +|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||+++.
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~   96 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSP   96 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCG
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            5899999999999999999999987    69999999999999999999999999999999999999998765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.46  E-value=2.2e-13  Score=136.56  Aligned_cols=132  Identities=29%  Similarity=0.539  Sum_probs=112.5

Q ss_pred             ChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHH
Q 036950          282 NTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDS-SFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEK  360 (469)
Q Consensus       282 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~-~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~  360 (469)
                      +.++.++.+..++..|+.+|+.|+|++|+..|++|+.+++..+ ....++..........+|+|+|.||+++++|++|+.
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            5788999999999999999999999999999999999765421 112233344677788999999999999999999999


Q ss_pred             HHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036950          361 LCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIF  417 (469)
Q Consensus       361 ~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf  417 (469)
                      +|++||+++                       +.+|++|++++|++.     .+...+..+...++++.+++++.|++||
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~-----~~~~~l~~~~~~~~~~~~a~k~~~~kmf  369 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK-----AIQAELLKVKQKIKAQKDKEKAAYAKMF  369 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999998                       778999999999999     9999999999999999999999999998


Q ss_pred             h
Q 036950          418 A  418 (469)
Q Consensus       418 ~  418 (469)
                      +
T Consensus       370 ~  370 (370)
T 1ihg_A          370 A  370 (370)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.41  E-value=4.6e-13  Score=116.41  Aligned_cols=67  Identities=27%  Similarity=0.420  Sum_probs=63.3

Q ss_pred             CCCCCEEEEEEEEEecCCcEEecc-----------------ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccc
Q 036950           67 PKDLDEVFVKYEVRLEDGTLISKS-----------------DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAF  129 (469)
Q Consensus        67 ~~~gd~V~i~y~~~~~~G~~~~~t-----------------~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ay  129 (469)
                      ++.||.|++||++++ +|++|++|                 .|+.|.+|.+++++||+++|.+|++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            678999999999999 99999987                 289999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 036950          130 GKNGR  134 (469)
Q Consensus       130 g~~~~  134 (469)
                      |+++.
T Consensus        81 G~~~~   85 (157)
T 3pr9_A           81 GKRDP   85 (157)
T ss_dssp             CCCCG
T ss_pred             CCCCh
Confidence            98765

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.39  E-value=7e-13  Score=115.59  Aligned_cols=68  Identities=16%  Similarity=0.351  Sum_probs=63.6

Q ss_pred             CCCCCEEEEEEEEEecCCcEEeccccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCC
Q 036950           67 PKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPA  136 (469)
Q Consensus        67 ~~~gd~V~i~y~~~~~~G~~~~~t~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~  136 (469)
                      ++.||.|++||+++ .+|++|++|. +.|.+|.+++++||+++|.||++|+++.|.|||+.|||+.+...
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~l   70 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEG   70 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGG
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCCcce
Confidence            67899999999999 8999999887 99999999999999999999999999999999999999886543

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.36  E-value=9.3e-13  Score=115.61  Aligned_cols=64  Identities=27%  Similarity=0.474  Sum_probs=57.8

Q ss_pred             eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCC
Q 036950          186 MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS  250 (469)
Q Consensus       186 ~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~  250 (469)
                      +|+ ++++.||++||++ +.++.|++|.+|.+.+++||+.+|.+|++||++.|.|||++|||+.+.
T Consensus        32 ~v~Y~g~l~dG~vfDss-~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~   96 (169)
T 4dt4_A           32 LVHFTLKLDDGTTAEST-RNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSP   96 (169)
T ss_dssp             EEEEEEEETTSCEEEEH-HHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCG
T ss_pred             EEEEEEEECCCCEEEec-CCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            455 8888999999998 555689999999999999999999999999999999999999998643

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.35  E-value=4.6e-12  Score=106.60  Aligned_cols=69  Identities=28%  Similarity=0.444  Sum_probs=63.5

Q ss_pred             HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950          286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV  365 (469)
Q Consensus       286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a  365 (469)
                      ..+.|..+++.||.+|+.|+|++|+..|++||.+.|..               ..+|+|+|.||+++|+|++|+.+|+++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---------------~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---------------ITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            44678889999999999999999999999999987765               678999999999999999999999999


Q ss_pred             Hhhc
Q 036950          366 LELD  369 (469)
Q Consensus       366 l~~d  369 (469)
                      |+++
T Consensus        69 l~~~   72 (127)
T 4gcn_A           69 VEVG   72 (127)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9876

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.35  E-value=6e-13  Score=115.40  Aligned_cols=69  Identities=25%  Similarity=0.437  Sum_probs=64.3

Q ss_pred             CCCCCCEEEEEEEEEecCCcEEecc-----------------ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCcc
Q 036950           66 NPKDLDEVFVKYEVRLEDGTLISKS-----------------DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYA  128 (469)
Q Consensus        66 ~~~~gd~V~i~y~~~~~~G~~~~~t-----------------~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~a  128 (469)
                      .++.||.|++||++++.+|++|++|                 .|+.|.+|.+++++||+++|.||++|+++.|.|||+.|
T Consensus         1 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~a   80 (151)
T 1ix5_A            1 MVDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKA   80 (151)
T ss_dssp             CCCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTS
T ss_pred             CCCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHH
Confidence            3678999999999998899999987                 48999999999999999999999999999999999999


Q ss_pred             ccCCCC
Q 036950          129 FGKNGR  134 (469)
Q Consensus       129 yg~~~~  134 (469)
                      ||+++.
T Consensus        81 YG~~~~   86 (151)
T 1ix5_A           81 YGNRNE   86 (151)
T ss_dssp             SCSCCS
T ss_pred             CCCCCc
Confidence            998765

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.30  E-value=3.7e-12  Score=110.67  Aligned_cols=64  Identities=31%  Similarity=0.389  Sum_probs=56.6

Q ss_pred             eEE-EEEecCCcEEEecCCCC-------------CCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCc
Q 036950          186 MVQ-WFKLHDGTVFVKKGHDE-------------EPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE  251 (469)
Q Consensus       186 ~V~-~~~l~~g~~~d~~~~~~-------------~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~  251 (469)
                      +|+ ++++ ||++||+| +.+             ..|++|.+|.+++++||+.+|.+|++||+..|.|||.+|||+.+..
T Consensus         9 ~v~Y~g~l-dG~vfDss-~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~   86 (157)
T 3pr9_A            9 KISYDGYV-DGKLFDTT-NEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGKRDPS   86 (157)
T ss_dssp             EEEEEEEE-TTEEEEES-CHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTTCCCCGG
T ss_pred             EEEEEEEE-CCEEEEec-cccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhcCCCChH
Confidence            455 8899 99999998 431             3799999999999999999999999999999999999999987653

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.24  E-value=3.1e-11  Score=104.59  Aligned_cols=63  Identities=30%  Similarity=0.446  Sum_probs=56.6

Q ss_pred             eEE-EEEec-CCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCC
Q 036950          186 MVQ-WFKLH-DGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS  250 (469)
Q Consensus       186 ~V~-~~~l~-~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~  250 (469)
                      +|+ .+++. +|++||++ +. ..|++|.+|.++++|||+.+|.+|++|+++.|.|||.+|||+.+.
T Consensus        14 ~v~Y~g~~~~dG~~fdss-~~-~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~~   78 (151)
T 2kr7_A           14 LIEYEVREQGSSIVLDSN-IS-KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYES   78 (151)
T ss_dssp             EEEEEEEESSCSCEEEES-TT-TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCS
T ss_pred             EEEEEEEECCCCCEEEeC-CC-CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCCc
Confidence            455 88887 99999998 43 579999999999999999999999999999999999999998654

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.22  E-value=2.3e-11  Score=112.00  Aligned_cols=63  Identities=32%  Similarity=0.394  Sum_probs=56.1

Q ss_pred             eEE-EEEecCCcEEEecCCCC-------------CCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCC
Q 036950          186 MVQ-WFKLHDGTVFVKKGHDE-------------EPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS  250 (469)
Q Consensus       186 ~V~-~~~l~~g~~~d~~~~~~-------------~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~  250 (469)
                      +|+ +|++ ||++||+| +.+             +.|++|.+|.++++|||+.+|.+|++|++..|.|||.+|||+.+.
T Consensus         9 ~v~Y~g~l-dG~vfDss-~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AYGe~~~   85 (231)
T 3prb_A            9 KISYDGYV-DGKLFDTT-NEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGKRDP   85 (231)
T ss_dssp             EEEEEEEE-TTEEEEES-CHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTTCCCCG
T ss_pred             EEEEEEEE-CCEEEEec-cchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh
Confidence            455 8899 99999998 431             379999999999999999999999999999999999999998653

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.21  E-value=4.6e-11  Score=121.42  Aligned_cols=98  Identities=12%  Similarity=0.203  Sum_probs=83.6

Q ss_pred             CCCCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCC
Q 036950           65 ENPKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDA  142 (469)
Q Consensus        65 ~~~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~  142 (469)
                      ..+..||.|++||+++. ||+.|+++  .|+.|.+|.|+++|||+++|.||++|+++.|.+|+..+||..+.        
T Consensus       156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l--------  226 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSV-DGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL--------  226 (432)
T ss_dssp             SCCCTTCEEEECEEEES-SSCBCSSCCCSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT--------
T ss_pred             CCCCCCCEEEEEEEEee-CCeEccCCCccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC--------
Confidence            56899999999999995 99999987  89999999999999999999999999999999999999997543        


Q ss_pred             CCCCceEEEeEeeeeeccccccccchhhhhh
Q 036950          143 VPSNANLHITLEMVSWKTVSDITKDKKVLKK  173 (469)
Q Consensus       143 ip~~~~l~~~v~l~~~~~~~dv~~d~~l~k~  173 (469)
                        +|.++.|.|+|+++....-..-|..+.+.
T Consensus       227 --ag~~~~F~V~v~~v~~~~lpeldDEfak~  255 (432)
T 1w26_A          227 --KGKAAKFAINLKKVEERELPELTAEFIKR  255 (432)
T ss_dssp             --SSCEEEEEEECCEECCEECCCCSHHHHTT
T ss_pred             --CCceEEEEEEEEEEeccCCCCcchHHHHH
Confidence              57899999999998764333334455543

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.20  E-value=1.9e-11  Score=100.58  Aligned_cols=74  Identities=15%  Similarity=0.273  Sum_probs=63.4

Q ss_pred             eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEc-CCCccCCCCCcccccCCCCCceE
Q 036950          186 MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIE-PEYAFGSCSSEKELAIVPANSTL  263 (469)
Q Consensus       186 ~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~-~~~~yg~~~~~~~~~~ip~~~~l  263 (469)
                      +|+ .+++ ||++||++.   +.|++|.+|.++++|||+.+|.+|++||+..|.|+ |.. ||..+        .+++++
T Consensus        37 ~v~Y~g~~-dG~~fdss~---~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~--------~~g~~l  103 (113)
T 1hxv_A           37 IIDFTGIV-DNKKLASAS---AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKE--------LQSKPV  103 (113)
T ss_dssp             EEEEEEEE-TTEECSTTC---CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSG--------GGSCCC
T ss_pred             EEEEEEEE-CCEEcccCC---ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCC--------CCCCEE
Confidence            444 7887 999999872   68999999999999999999999999999999996 444 88653        246899


Q ss_pred             EEEEEEeee
Q 036950          264 FYEVELVSF  272 (469)
Q Consensus       264 ~f~vel~~~  272 (469)
                      +|+|+|+++
T Consensus       104 ~F~V~l~~V  112 (113)
T 1hxv_A          104 TFEVVLKAI  112 (113)
T ss_dssp             EEEEEECCB
T ss_pred             EEEEEEEEE
Confidence            999999976

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.20  E-value=1.6e-10  Score=101.85  Aligned_cols=62  Identities=16%  Similarity=0.285  Sum_probs=55.6

Q ss_pred             eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCC
Q 036950          186 MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCS  249 (469)
Q Consensus       186 ~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~  249 (469)
                      +|+ ++++.+|++||++ +. ..|++|.+|.++++|||+.+|.+|++|+++.|.|||..|||+.+
T Consensus        10 ~v~Y~g~~~dG~~fdss-~~-~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~   72 (171)
T 2k8i_A           10 SLAYQVRTEDGVLVDES-PV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (171)
T ss_dssp             EEEEEEEETTSCEEEEC-CS-SSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred             EEEEEEEECCCCEEeec-cC-CcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence            344 7888899999998 43 47999999999999999999999999999999999999999874

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.20  E-value=1.5e-11  Score=106.58  Aligned_cols=65  Identities=34%  Similarity=0.456  Sum_probs=57.0

Q ss_pred             eEE-EEEecCCcEEEecCCC-------------CCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCc
Q 036950          186 MVQ-WFKLHDGTVFVKKGHD-------------EEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE  251 (469)
Q Consensus       186 ~V~-~~~l~~g~~~d~~~~~-------------~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~  251 (469)
                      +|+ ++++.+|++||+| +.             ...|++|.+|.+.+++||+.+|.+|++||+..|.|||++|||+.+..
T Consensus         9 ~v~Y~g~~~dG~~fdss-~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aYG~~~~~   87 (151)
T 1ix5_A            9 KVDYIGKLESGDVFDTS-IEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAYGNRNEM   87 (151)
T ss_dssp             EECCEECCTTSCCCEES-CHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSSCSCCST
T ss_pred             EEEEEEEECCCCEEEec-chhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHCCCCCcc
Confidence            344 8888899999998 42             24799999999999999999999999999999999999999986543

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.17  E-value=6.3e-11  Score=106.59  Aligned_cols=63  Identities=16%  Similarity=0.282  Sum_probs=56.0

Q ss_pred             eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCC
Q 036950          186 MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS  250 (469)
Q Consensus       186 ~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~  250 (469)
                      +|+ ++++.+|++||++ +. ..|++|.+|.++++|||+.+|.+|++|++..|.|||.+|||+.+.
T Consensus        10 ~v~Y~g~~~dG~~fdss-~~-~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~   73 (196)
T 2kfw_A           10 SLAYQVRTEDGVLVDES-PV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (196)
T ss_dssp             EEEEEEEETTTEEEEEC-CT-TSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCT
T ss_pred             EEEEEEEECCCCEEEec-CC-CCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh
Confidence            344 7788899999998 43 489999999999999999999999999999999999999998643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.17  E-value=1.5e-10  Score=96.35  Aligned_cols=94  Identities=22%  Similarity=0.256  Sum_probs=84.3

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+.+.|+.+++.|+|.+|+..|++++...+.+               ..+|.|+|.||+++|+|++|+.++++++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            46788999999999999999999999999988765               678999999999999999999999999999


Q ss_pred             c-----------------------HHHHHHHHhhC------CCCCCcchHHHHHHHHHHHHHH
Q 036950          369 D-----------------------KLDIKKALEID------PDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       369 d-----------------------~~~~~~al~l~------p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                      +                       +..|+++++++      |++.     .+...+..+..++
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~-----~~~~~l~~~~~~l  125 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR-----EIDQLYYKASQQR  125 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHH-----HHHHHHHHHHHhh
Confidence            8                       67889999999      8888     8888888776653

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.10  E-value=1.1e-10  Score=117.01  Aligned_cols=98  Identities=9%  Similarity=0.184  Sum_probs=81.4

Q ss_pred             CCCCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCC
Q 036950           65 ENPKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDA  142 (469)
Q Consensus        65 ~~~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~  142 (469)
                      ..++.||.|++||+++. ||+.|+++  .|+.|.+|.|+++|||+++|.||++|+++.|.|++...||..+.        
T Consensus       159 ~~~~~gD~V~i~y~g~~-dG~~fd~~~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l--------  229 (392)
T 1t11_A          159 EAAENGKRVSIDFVGSI-DGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL--------  229 (392)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT--------
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEccCCCccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC--------
Confidence            46899999999999994 99999987  89999999999999999999999999999999986667875433        


Q ss_pred             CCCCceEEEeEeeeeeccccccccchhhhhh
Q 036950          143 VPSNANLHITLEMVSWKTVSDITKDKKVLKK  173 (469)
Q Consensus       143 ip~~~~l~~~v~l~~~~~~~dv~~d~~l~k~  173 (469)
                        +|.++.|.|+|+++....-..-|..+.+.
T Consensus       230 --aGk~~~F~V~v~~i~~~~lpeldDEfak~  258 (392)
T 1t11_A          230 --KGKAAKFAIKVNKVEARELPELNDEFVAR  258 (392)
T ss_dssp             --SSCEEEECCCEEEEEEEECCCCSTGGGGG
T ss_pred             --CCCeEEEEEEEEEEEcCCCCCcCHHHHHH
Confidence              68899999999999764333334445543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.10  E-value=9.1e-10  Score=96.12  Aligned_cols=98  Identities=21%  Similarity=0.219  Sum_probs=85.8

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..+..+...|+.+++.|+|++|+..|++++.+.+.+               ..+|+|+|.||+++++|++|+.+++++|+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~   73 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------------PIYLSNRAAAYSASGQHEKAAEDAELATV   73 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            457788999999999999999999999999988765               67899999999999999999999999999


Q ss_pred             hc-----------------------HHHHHHHHhhCCCCCCcchHH--HHHHHHHHHHHHHHH
Q 036950          368 LD-----------------------KLDIKKALEIDPDNSLEAGWG--VRMEYKLLKEKVREY  405 (469)
Q Consensus       368 ~d-----------------------~~~~~~al~l~p~~~~~~~~~--~~~~l~~~~~~~~~~  405 (469)
                      ++                       +..|+++++++|++.     .  +...+..++.++.+.
T Consensus        74 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~l~~~~~~~~~~  131 (164)
T 3sz7_A           74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG-----SDAMKRGLETTKRKIEEA  131 (164)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC-----CHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHHHHHHH
Confidence            98                       678999999999998     6  566666666655443

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.05  E-value=4.7e-10  Score=97.66  Aligned_cols=58  Identities=19%  Similarity=0.390  Sum_probs=52.3

Q ss_pred             eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCC
Q 036950          186 MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS  250 (469)
Q Consensus       186 ~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~  250 (469)
                      +|+ .++ .||++||++ +     ++|.+|.++++|||+.+|.+|++||++.|.|||.+|||+.+.
T Consensus        10 ~v~Y~g~-~dG~~fdss-~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~   68 (158)
T 3cgm_A           10 TIRYTLQ-VEGEVLDQG-E-----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDP   68 (158)
T ss_dssp             EEEEEEE-ETTEEEEEE-E-----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCCG
T ss_pred             EEEEEEE-ECCEEEEee-E-----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCCc
Confidence            344 777 899999997 3     999999999999999999999999999999999999998653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.94  E-value=4.3e-09  Score=88.17  Aligned_cols=98  Identities=28%  Similarity=0.390  Sum_probs=84.9

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|+.+++.|+|.+|+..|++++...+..               ..++.|+|.||+++++|++|+.+++++++++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   73 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALELD   73 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            5567899999999999999999999999987765               6689999999999999999999999999988


Q ss_pred             -----------------------HHHHHHHHhhCCC-----CCCcchHHHHHHHHHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPD-----NSLEAGWGVRMEYKLLKEKVREYNK  407 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~-----~~~~~~~~~~~~l~~~~~~~~~~~~  407 (469)
                                             +..|+++++++|+     +.     .+...+..++.+.....+
T Consensus        74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-----~~~~~l~~~~~~~~~~~e  134 (137)
T 3q49_B           74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD-----DIPSALRIAKKKRWNSIE  134 (137)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTT-----HHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence                                   6788999999888     66     788888887776654443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.90  E-value=1.3e-08  Score=87.80  Aligned_cols=90  Identities=16%  Similarity=0.051  Sum_probs=77.5

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .......|+.+++.|+|++|+..|++++.+.|.+               ..+|.|+|.||.++|+|++|+.+++++|+++
T Consensus        31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~   95 (150)
T 4ga2_A           31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD---------------PKAHRFLGLLYELEENTDKAVECYRRSVELN   95 (150)
T ss_dssp             HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence            4455678999999999999999999999998766               7789999999999999999999999999998


Q ss_pred             -----------------------HH-HHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950          370 -----------------------KL-DIKKALEIDPDNSLEAGWGVRMEYKLLK  399 (469)
Q Consensus       370 -----------------------~~-~~~~al~l~p~~~~~~~~~~~~~l~~~~  399 (469)
                                             .. .+++|++++|+|.     .+...+.++-
T Consensus        96 p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~-----~~~~l~~~ll  144 (150)
T 4ga2_A           96 PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP-----AVYKLKEQLL  144 (150)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH-----HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH-----HHHHHHHHHH
Confidence                                   33 3689999999998     7766655543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.88  E-value=2e-08  Score=85.42  Aligned_cols=97  Identities=19%  Similarity=0.156  Sum_probs=81.3

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..+++.|+|.+|+..|++++...+.+               ..++.|+|.||.++|+|++|+.+++++++++
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---------------ARYFLGLGACRQSLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4456789999999999999999999999987765               6788999999999999999999999999987


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                                             ...|+++++++|++.     .......++...+....
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~l~~l~  137 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP-----AHEALAARAGAMLEAVT  137 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG-----GGHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-----chHHHHHHHHHHHHHHH
Confidence                                   667888999999887     66555555555554443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.85  E-value=2.2e-08  Score=86.27  Aligned_cols=93  Identities=16%  Similarity=0.131  Sum_probs=77.8

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..+++.|+|.+|+..|++++...+.+               ..++.|+|.||.++|+|++|+.+++++++++
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---------------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4556789999999999999999999999987765               6788999999999999999999999999987


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                                             +..|+++++++|++.     .......++...+
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~l  136 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP-----EFXELSTRVSSML  136 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG-----GGHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC-----cchHHHHHHHHHH
Confidence                                   667888888888877     5544444444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.84  E-value=2.6e-08  Score=86.28  Aligned_cols=66  Identities=17%  Similarity=0.175  Sum_probs=59.8

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|..+++.|+|++|+..|++++...|.+               ..+|.|+|.||.++|+|++|+.++++|+++
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---------------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---------------VDYIMGLAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            34567899999999999999999999999998866               678999999999999999999999998876


Q ss_pred             c
Q 036950          369 D  369 (469)
Q Consensus       369 d  369 (469)
                      +
T Consensus       100 ~  100 (151)
T 3gyz_A          100 G  100 (151)
T ss_dssp             S
T ss_pred             C
Confidence            6

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.78  E-value=2.7e-07  Score=79.27  Aligned_cols=100  Identities=25%  Similarity=0.336  Sum_probs=87.6

Q ss_pred             hHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHH
Q 036950          283 TQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLC  362 (469)
Q Consensus       283 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~  362 (469)
                      ..+..+.+..+...|+.++..|+|..|+..|.+++...+..               ..++.|+|.||+++++|++|+..+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46778899999999999999999999999999999987654               668899999999999999999999


Q ss_pred             HHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          363 SKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       363 ~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                      +++++++                       ...|+++++++|++.     .+...+..+....
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~~~~~~~~  128 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-----DAKMKYQECNKIV  128 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHH
Confidence            9999988                       678999999999998     7776666654433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.76  E-value=6.4e-08  Score=77.80  Aligned_cols=91  Identities=20%  Similarity=0.271  Sum_probs=78.5

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|+.++..|+|.+|+..|.+++...+.+               ..++.|+|.||+++++|++|+..+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            45677899999999999999999999999987654               568899999999999999999999999988


Q ss_pred             c-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950          369 D-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK  399 (469)
Q Consensus       369 d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  399 (469)
                      +                       ...++++++++|++.     .+...+..+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP-----QLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH-----HHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-----HHHHHHHHhh
Confidence            7                       567888888888887     7776666654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.69  E-value=1e-07  Score=103.24  Aligned_cols=113  Identities=13%  Similarity=0.142  Sum_probs=60.8

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC------------CC-HHHHH------HHHHHHHHhHhHHHHHH
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSS------------FS-DEEKQ------QAKVLKITCNLNNAACK  349 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~------------~~-~e~~~------~~~~l~~~~~~N~a~~~  349 (469)
                      .+..+.+.|+.+.+.|+|++|+..|++||++.+....            .. ++-..      ++++-...+|+|+|.||
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l   87 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL   87 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3556667777777777777777777777776655410            00 00000      00011133555555555


Q ss_pred             HHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          350 LKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       350 ~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                      .++|+|++|+.++++||+++                       +..|++|++++|++.     .+...|..+...+.+..
T Consensus        88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~-----~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP-----DAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-----HHHHHHHHHHHHTTCCT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHhhhhhHHHhcccHH
Confidence            55555555555555555555                       455666666666665     55555555554444433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=1.8e-07  Score=78.67  Aligned_cols=93  Identities=32%  Similarity=0.506  Sum_probs=78.1

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|+.++..|+|.+|+..|++++...+.            ......++.|+|.||+++++|++|+.+|+++++++
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   95 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT------------PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD   95 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc------------chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            456788999999999999999999999987553            12346789999999999999999999999999887


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK  399 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  399 (469)
                                             ...|+++++++|++.     .+...+..+.
T Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~  143 (148)
T 2dba_A           96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK-----VFQEALRNIS  143 (148)
T ss_dssp             SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH-----HHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHH
Confidence                                   567888888888888     7776666654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.66  E-value=2.7e-07  Score=75.53  Aligned_cols=95  Identities=25%  Similarity=0.335  Sum_probs=77.1

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|..++..|+|..|+..|.+++...+..               ..++.|+|.||..+++|++|+.++++++++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            45677889999999999999999999999987654               567899999999999999999999999987


Q ss_pred             c------------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          369 D------------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       369 d------------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                      +                              ...|++++++.| +.     .+...+..+...+++
T Consensus        68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~-----~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TP-----DVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CH-----HHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CH-----HHHHHHHHHHHHHHH
Confidence            4                              556777777777 45     666666666665544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.63  E-value=1.6e-07  Score=89.74  Aligned_cols=80  Identities=31%  Similarity=0.448  Sum_probs=72.9

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..++..|+.+++.|+|.+|+..|++|+...+.+               ..+|+|+|.||+++|+|++|+.+++++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            4567899999999999999999999999987765               6789999999999999999999999999998


Q ss_pred             -----------------------HHHHHHHHhhCCCCC
Q 036950          370 -----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~  384 (469)
                                             ...|+++++++|++.
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence                                   678999999999873

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.62  E-value=3.1e-07  Score=81.00  Aligned_cols=95  Identities=13%  Similarity=0.156  Sum_probs=74.5

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +.-+.+.|+.+++.|+|++|+..|++|++..|.+               ..++.++|.||.++|+|++|+..+.+++..+
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~   69 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN---------------VETLLKLGKTYMDIGLPNDAIESLKKFVVLD   69 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            3456689999999999999999999999987765               6678899999999999999999999998877


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                                             ...+.+++.++|++.     .+...+..+...+.+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-----~~~~~lg~~~~~~g~  122 (184)
T 3vtx_A           70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYA-----DAYYKLGLVYDSMGE  122 (184)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTC
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-----HHHHHHHHHHHHhCC
Confidence                                   455666677777766     555555555444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.61  E-value=4.5e-07  Score=74.04  Aligned_cols=98  Identities=32%  Similarity=0.392  Sum_probs=82.0

Q ss_pred             HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950          285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK  364 (469)
Q Consensus       285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~  364 (469)
                      .....+..+...|+.++..|+|..|+..|.+++...+..               ..++.++|.||..+++|++|+..+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~   71 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---------------AVYFCNRAAAYSKLGNYAGAVQDCER   71 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhhchHHHHHHHHH
Confidence            344567788899999999999999999999999986654               56789999999999999999999999


Q ss_pred             HHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          365 VLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       365 al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                      +++++                       ...++++++++|++.     .+...+..+...+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~  127 (131)
T 2vyi_A           72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE-----TYKSNLKIAELKL  127 (131)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHHHH
T ss_pred             HHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch-----HHHHHHHHHHHHH
Confidence            99887                       567888888888887     7766666655443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.61  E-value=3.2e-07  Score=73.37  Aligned_cols=70  Identities=33%  Similarity=0.450  Sum_probs=61.4

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|+.+++.|+|.+|+..|++++...+..               ..++.|+|.||+++|+|++|+.+++++|  
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al--   65 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---------------PVGYSNKAMALIKLGEYTQAIQMCQQGL--   65 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHH--
Confidence            35667899999999999999999999999987755               6688999999999999999998877766  


Q ss_pred             cHHHHHHHHhhCCCCC
Q 036950          369 DKLDIKKALEIDPDNS  384 (469)
Q Consensus       369 d~~~~~~al~l~p~~~  384 (469)
                               +++|++.
T Consensus        66 ---------~~~p~~~   72 (111)
T 2l6j_A           66 ---------RYTSTAE   72 (111)
T ss_dssp             ---------TSCSSTT
T ss_pred             ---------HhCCCcc
Confidence                     7788884

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.61  E-value=2.4e-07  Score=76.25  Aligned_cols=91  Identities=31%  Similarity=0.384  Sum_probs=76.1

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|+.++..|+|.+|+..|.+++...+..               ..++.|+|.||+.+++|++|+.+++++++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~   80 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------AKLYSNRAACYTKLLEFQLALKDCEECIQLE   80 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            5567889999999999999999999999876644               5688999999999999999999999999876


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKE  400 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~  400 (469)
                                             ...|+++++++|++.     .+...+..+..
T Consensus        81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~  129 (133)
T 2lni_A           81 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK-----EAADGYQRCMM  129 (133)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT-----HHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHH
Confidence                                   566777788888877     66666655543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.59  E-value=4.6e-07  Score=82.30  Aligned_cols=106  Identities=12%  Similarity=0.081  Sum_probs=79.2

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSD-EEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~-e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      +..+..+|..++..|+|.+|+..|++++...|.++..-- ............+++|+|.||.++|+|++|+.+++++|++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            445678999999999999999999999997653210000 0000001122334455999999999999999999999999


Q ss_pred             c-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 036950          369 D-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKE  400 (469)
Q Consensus       369 d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~  400 (469)
                      +                       +..|+++++++|++.     .+...+..+.-
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~~lg~~~~  133 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL-----AANIFLGNYYY  133 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHH
Confidence            8                       678999999999999     88777776643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.58  E-value=1e-07  Score=96.19  Aligned_cols=158  Identities=18%  Similarity=0.250  Sum_probs=115.1

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-  369 (469)
                      ......|+.+++.|+|.+|+..|++++...+..           ......++.++|.++.++|+|++|+..|+++++++ 
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSI-----------AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS-----------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            334556999999999999999999999977653           22345689999999999999999999999999887 


Q ss_pred             ----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhh
Q 036950          370 ----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAK  427 (469)
Q Consensus       370 ----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~~~~~~  427 (469)
                                            ...|+++++++|++.     .+...+..+...++...   ...+...++........+
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~---~~~~y~~lg~~~~~~~~~  398 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ-----QIREGLEKAQRLLKQSQ---KRDYYKILGVKRNAKKQE  398 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH-----HHHHHHHHHHHHHHHHH---SCCSGGGSCSSTTCCTTH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH-----HHHHHHHHHHHHhhccc---chhHHHHhCCCccCCHHH
Confidence                                  678999999999999     89888888877665532   222334444333333334


Q ss_pred             hhccccc--cCCCcccccccc-cccchhhhhheeccccccccc
Q 036950          428 SASSMAK--QEPAPMVLIARH-DTSIKLSMIAIESTRTVLISP  467 (469)
Q Consensus       428 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  467 (469)
                      ..+..++  ...+|+...... .......|..+..+-+||.||
T Consensus       399 ~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~  441 (450)
T 2y4t_A          399 IIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP  441 (450)
T ss_dssp             HHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred             HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence            4444332  336676543222 234566788888899999887

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=98.58  E-value=8.4e-08  Score=97.39  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=66.2

Q ss_pred             EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEE
Q 036950          189 WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVE  268 (469)
Q Consensus       189 ~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ve  268 (469)
                      .|+ .||+.|+++ +  +.|+.|.+|.|.++|||+.+|.+|++|++..|.+|+..+||..+.        +|.+++|+|+
T Consensus       169 ~g~-~dG~~fd~~-~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l--------ag~~~~F~V~  236 (432)
T 1w26_A          169 TGS-VDGEEFEGG-K--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL--------KGKAAKFAIN  236 (432)
T ss_dssp             EEE-SSSCBCSSC-C--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT--------SSCEEEEEEE
T ss_pred             EEe-eCCeEccCC-C--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC--------CCceEEEEEE
Confidence            666 599999987 3  689999999999999999999999999999999999999997542        5689999999


Q ss_pred             Eeeeee
Q 036950          269 LVSFIK  274 (469)
Q Consensus       269 l~~~~~  274 (469)
                      |+++..
T Consensus       237 v~~v~~  242 (432)
T 1w26_A          237 LKKVEE  242 (432)
T ss_dssp             CCEECC
T ss_pred             EEEEec
Confidence            999975

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.58  E-value=2.5e-07  Score=76.51  Aligned_cols=95  Identities=12%  Similarity=0.022  Sum_probs=75.1

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKL  371 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~  371 (469)
                      .+.+.|..+++.|+|.+|+..|.+++...+.+               ..++.++|.|+..+|++++|+..+++++     
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al-----   78 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER---------------EEAWRSLGLTQAENEKDGLAIIALNHAR-----   78 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Confidence            45688999999999999999999999988766               6789999999999999999988777766     


Q ss_pred             HHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036950          372 DIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFA  418 (469)
Q Consensus       372 ~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~  418 (469)
                            +++|++.     .+...+..+.....+..+.. ..|.+.+.
T Consensus        79 ------~l~P~~~-----~~~~~la~~~~~~g~~~~A~-~~~~~al~  113 (121)
T 1hxi_A           79 ------MLDPKDI-----AVHAALAVSHTNEHNANAAL-ASLRAWLL  113 (121)
T ss_dssp             ------HHCTTCH-----HHHHHHHHHHHHHHHHHHHH-HHHHHHHC
T ss_pred             ------HhCCCCH-----HHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence                  6778777     77777766666665554443 33555544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.51  E-value=4e-07  Score=98.60  Aligned_cols=62  Identities=18%  Similarity=0.089  Sum_probs=47.0

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY  405 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~  405 (469)
                      ..+|+|+|.+|.++|+|++|+.++++||+++      ...+-.++..-.+..     ++...++++.......
T Consensus       111 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~-----~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT-----DYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT-----THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH-----HHHHHHHHHHHhChhH
Confidence            6689999999999999999999999999999      444555555556656     6666666665544433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.51  E-value=7.6e-07  Score=73.29  Aligned_cols=92  Identities=12%  Similarity=0.115  Sum_probs=71.5

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-  369 (469)
                      ..+...|..+++.|+|.+|+..|.+++...+..+            ....++.++|.||+++|+|++|+..++++++.+ 
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p   70 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGV------------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP   70 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            3456789999999999999999999999877542            123578899999999999999999999998765 


Q ss_pred             -------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950          370 -------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK  399 (469)
Q Consensus       370 -------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  399 (469)
                                               ...|+++++..|++.     .+...+..+.
T Consensus        71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~a~~~l~  120 (129)
T 2xev_A           71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD-----AARVAQERLQ  120 (129)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH-----HHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh-----HHHHHHHHHH
Confidence                                     456777777777776     5544444443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.50  E-value=1.4e-06  Score=79.52  Aligned_cols=87  Identities=21%  Similarity=0.369  Sum_probs=75.7

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIG-YDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~-~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|+.+++.|+|.+|+..|++++...+ .+               ..++.|+|.||.++|+|++|+.+++++++++
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---------------SVTAYNCGVCADNIKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---------------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence            4567899999999999999999999999876 43               4678889999999999999999999999988


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKL  397 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~  397 (469)
                                             +..|+++++++|++.     .+...+..
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~  118 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA-----TIEKLYAI  118 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-----HHHHHHHH
Confidence                                   678999999999988     66444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.49  E-value=2.7e-07  Score=95.32  Aligned_cols=96  Identities=26%  Similarity=0.349  Sum_probs=84.6

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      .+.+..+...|+.+++.|+|++|+..|++|+...+..               ..++.|+|.||+++++|++|+.++++|+
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al   67 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDATRAI   67 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3567788899999999999999999999999987654               7789999999999999999999999999


Q ss_pred             hhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          367 ELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       367 ~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                      +++                       +..|++|++++|++.     .+...+..+....
T Consensus        68 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-----~~~~~l~~~~~~~  121 (477)
T 1wao_1           68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-----DAKMKYQECNKIV  121 (477)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT-----THHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHH
Confidence            998                       678999999999999     8887777764443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.48  E-value=7.4e-07  Score=80.90  Aligned_cols=60  Identities=20%  Similarity=0.260  Sum_probs=56.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +.|..+++.|+|++|+..|++++...|.+               ..++.|+|.||+++|+|++|+.+++++|+++
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKAPNN---------------VDCLEACAEMQVCRGQEKDALRMYEKILQLE  118 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            48999999999999999999999998766               6789999999999999999999999999998

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.48  E-value=2.4e-07  Score=72.92  Aligned_cols=66  Identities=17%  Similarity=0.187  Sum_probs=57.7

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-hHhHHHHHHHHhhCHHHHHHHHHHHHhhcHH
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKIT-CNLNNAACKLKLKEYKQAEKLCSKVLELDKL  371 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~-~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~  371 (469)
                      ..+.|..+++.|+|.+|+..|++++...+.+               .. ++.|+|.||+++|+|++|+.++++++     
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al-----   62 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVG---------------KDEAYYLMGNAYRKLGDWQKALNNYQSAI-----   62 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSST---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Confidence            4578999999999999999999999987755               55 89999999999999999988777766     


Q ss_pred             HHHHHHhhCCCCC
Q 036950          372 DIKKALEIDPDNS  384 (469)
Q Consensus       372 ~~~~al~l~p~~~  384 (469)
                            +++|++.
T Consensus        63 ------~~~p~~~   69 (99)
T 2kc7_A           63 ------ELNPDSP   69 (99)
T ss_dssp             ------HHCTTST
T ss_pred             ------hcCCCcH
Confidence                  6778777

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.46  E-value=9.3e-08  Score=82.34  Aligned_cols=91  Identities=15%  Similarity=0.115  Sum_probs=74.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc------
Q 036950          296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD------  369 (469)
Q Consensus       296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d------  369 (469)
                      .|+.+..+|++++|+..|++++...+.               ....++++|.||+++|+|++|+.+++++|+++      
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~---------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a   67 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQ---------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA   67 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHH---------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            467778889999999999999985432               35678999999999999999999999999998      


Q ss_pred             -----------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          370 -----------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       370 -----------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                                       +..|+++++++|++.     .+...+..+.....+..
T Consensus        68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~  116 (150)
T 4ga2_A           68 HRFLGLLYELEENTDKAVECYRRSVELNPTQK-----DLVLKIAELLCKNDVTD  116 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChH
Confidence                             778999999999999     88888877766554443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.43  E-value=1.4e-06  Score=70.02  Aligned_cols=86  Identities=19%  Similarity=0.193  Sum_probs=67.0

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHH
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLD  372 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~  372 (469)
                      ..+.|+.+|+.++|..|+..|++|++..+......        .....++.|+|.||.++|+++.|+...++++      
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al------   73 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLL------   73 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHH------
Confidence            35789999999999999999999999875432111        1135688999999999999999988777665      


Q ss_pred             HHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          373 IKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       373 ~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                           +++|++.     .+...+..++..+
T Consensus        74 -----~l~P~~~-----~~~~n~~~~~~~~   93 (104)
T 2v5f_A           74 -----ELDPEHQ-----RANGNLKYFEYIM   93 (104)
T ss_dssp             -----HHCTTCH-----HHHHHHHHHHHHH
T ss_pred             -----hcCCCCH-----HHHhhHHHHHHHH
Confidence                 7899998     7766666555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.42  E-value=1.2e-06  Score=87.71  Aligned_cols=63  Identities=16%  Similarity=0.062  Sum_probs=33.2

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhC-HHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE-YKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~-~~~ai~~~~~al~~d  369 (469)
                      .+...|..+++.|+|.+|+..|+++|.+.+..               ..+|+|++.|+.++|+ |++|+.++++||+++
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~---------------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~  162 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIELNAAN---------------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ  162 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhCccC---------------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence            34455666666666666666666666655543               3344444444444443 444444444444444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.41  E-value=2.4e-06  Score=82.65  Aligned_cols=101  Identities=19%  Similarity=0.289  Sum_probs=87.1

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .......|+.+++.|+|.+|+..|++++...+..           ......++.++|.||.++|+|++|+..++++++++
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  302 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSV-----------AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME  302 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----------hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            3444567999999999999999999999987654           23345678899999999999999999999999987


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                                             ...|+++++++|++.     .+...+.+++..+++.+
T Consensus       303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ-----QIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH-----HHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHHHHhc
Confidence                                   678999999999999     99999999988877654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.41  E-value=1.1e-06  Score=73.29  Aligned_cols=64  Identities=19%  Similarity=0.291  Sum_probs=58.9

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|..+++.|+|.+|+..|++||.+.+..               ..+|.|+|.||.++|+|++|+.+++++|+++
T Consensus        48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           48 ILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF---------------IKGYIRKAACLVAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            345679999999999999999999999987765               6789999999999999999999999999998

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.39  E-value=1.1e-06  Score=69.90  Aligned_cols=64  Identities=13%  Similarity=0.008  Sum_probs=57.3

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|..+++.|+|++|+..|++++...+..               ..+|.|+|.||.++|+|++|+..+++++++.
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPDY---------------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            345689999999999999999999999988765               5589999999999999999999999998765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.38  E-value=5.3e-06  Score=66.84  Aligned_cols=90  Identities=29%  Similarity=0.368  Sum_probs=73.2

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..++..|+|..|+..|.+++...+..               ..++.++|.||.++++|++|+..++++++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            4456788999999999999999999999976543               4578899999999999999999999999875


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK  399 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  399 (469)
                                             ...+++++.++|++.     .+...+..+.
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~  121 (125)
T 1na0_A           74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-----EAKQNLGNAK  121 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHH
Confidence                                   456777777788777     6666555543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.37  E-value=2.4e-06  Score=85.52  Aligned_cols=91  Identities=11%  Similarity=0.002  Sum_probs=80.2

Q ss_pred             hhcHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGK-YERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~-~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+..+|+.+++.|+ |++|+..|.+||.+.+.+               ..+|.|++.||.++|+|++|+.+|++||+++
T Consensus       132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~---------------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld  196 (382)
T 2h6f_A          132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---------------YQVWHHRRVLVEWLRDPSQELEFIADILNQD  196 (382)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            345679999999997 999999999999988766               7789999999999999999999999999998


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEK  401 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~  401 (469)
                                             +..|+++++++|+|.     .+...+..+...
T Consensus       197 P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~-----~a~~~lg~~l~~  246 (382)
T 2h6f_A          197 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN-----SVWNQRYFVISN  246 (382)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH-----HHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH
Confidence                                   788999999999998     777777666555

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.35  E-value=5.3e-06  Score=63.46  Aligned_cols=79  Identities=25%  Similarity=0.355  Sum_probs=65.4

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..+++.++|.+|+..|.+++...+..               ..++.|+|.||.++++|++|+..+++++   
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~---   70 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKAL---   70 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHH---
Confidence            4556788999999999999999999999987654               5678999999999999999988777766   


Q ss_pred             HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950          370 KLDIKKALEIDPDNSLEAGWGVRMEYKLLK  399 (469)
Q Consensus       370 ~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  399 (469)
                              +++|++.     .+...+..+.
T Consensus        71 --------~~~p~~~-----~~~~~l~~~~   87 (91)
T 1na3_A           71 --------ELDPNNA-----EAKQNLGNAK   87 (91)
T ss_dssp             --------HHCTTCH-----HHHHHHHHHH
T ss_pred             --------hcCCCCH-----HHHHHHHHHH
Confidence                    6778887     6666665554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.34  E-value=4e-06  Score=76.52  Aligned_cols=62  Identities=21%  Similarity=0.158  Sum_probs=35.8

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +...|..+++.|+|++|+..|++++...|.+               ..++.|+|.|+.++|++++|+..++++++++
T Consensus         8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~   69 (217)
T 2pl2_A            8 PLRLGVQLYALGRYDAALTLFERALKENPQD---------------PEALYWLARTQLKLGLVNPALENGKTLVART   69 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4456666666777777777777666655544               3344555555555555555555555555444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.34  E-value=1.9e-06  Score=74.65  Aligned_cols=65  Identities=17%  Similarity=0.030  Sum_probs=58.2

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHH-------hcCCCCCCHHHHHHHHHHHHHhH----hHHHHHHHHhhCHHHH
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNY-------IGYDSSFSDEEKQQAKVLKITCN----LNNAACKLKLKEYKQA  358 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~-------~~~~~~~~~e~~~~~~~l~~~~~----~N~a~~~~kl~~~~~a  358 (469)
                      +..+.+.|..+.+.|+|++|+..|.+||.+       .+.+               ..+|    +|++.|+.++|+|++|
T Consensus        57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~---------------~~A~~~~~~~rG~aL~~lgr~eEA  121 (159)
T 2hr2_A           57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE---------------GKLWISAVYSRALALDGLGRGAEA  121 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH---------------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch---------------HHHHHHHHHhHHHHHHHCCCHHHH
Confidence            447789999999999999999999999998       4432               5556    9999999999999999


Q ss_pred             HHHHHHHHhhc
Q 036950          359 EKLCSKVLELD  369 (469)
Q Consensus       359 i~~~~~al~~d  369 (469)
                      +.++++||+++
T Consensus       122 l~~y~kAlel~  132 (159)
T 2hr2_A          122 MPEFKKVVEMI  132 (159)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999998

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.27  E-value=2e-06  Score=74.23  Aligned_cols=62  Identities=18%  Similarity=0.208  Sum_probs=55.4

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..+...|..+++.|+|++|+..|.+|+.+.|.+               ..+|+|+|.||.++|+|++|+.++++||+
T Consensus        71 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---------------~~~~~~lg~~~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A           71 DYIMGLAAIYQIKEQFQQAADLYAVAFALGKND---------------YTPVFHTGQCQLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---------------CHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345679999999999999999999999998876               55889999999999999999998887774

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.25  E-value=1.2e-05  Score=73.37  Aligned_cols=105  Identities=13%  Similarity=0.082  Sum_probs=83.5

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHh-----------hCHHHHHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL-----------KEYKQAEK  360 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl-----------~~~~~ai~  360 (469)
                      .+...|..+++.|++++|+..|++++...|.+               ..++.|++.+|.++           |++++|+.
T Consensus        41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~  105 (217)
T 2pl2_A           41 ALYWLARTQLKLGLVNPALENGKTLVARTPRY---------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALS  105 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHH
Confidence            45678999999999999999999999988765               66788999999999           99999999


Q ss_pred             HHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036950          361 LCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIF  417 (469)
Q Consensus       361 ~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf  417 (469)
                      .++++++++                       +..|+++++++ ++.     .+...+..+.....+..+.. ..|.+..
T Consensus       106 ~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~-----~~~~~la~~~~~~g~~~~A~-~~~~~al  178 (217)
T 2pl2_A          106 VLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTP-----EIRSALAELYLSMGRLDEAL-AQYAKAL  178 (217)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH-----HHHHHHHHHHHHHTCHHHHH-HHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch-----HHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence            999999887                       66788888888 776     77777777766655554433 3355544


Q ss_pred             h
Q 036950          418 A  418 (469)
Q Consensus       418 ~  418 (469)
                      .
T Consensus       179 ~  179 (217)
T 2pl2_A          179 E  179 (217)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.23  E-value=1.4e-05  Score=69.79  Aligned_cols=88  Identities=15%  Similarity=0.125  Sum_probs=74.8

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHH-HHHhhCH--HHHHHHHHHHHh
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAAC-KLKLKEY--KQAEKLCSKVLE  367 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~-~~kl~~~--~~ai~~~~~al~  367 (469)
                      ..+...|..++..|+|.+|+..|.+++...+..               ..++.++|.| |++.++|  ++|+..++++++
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~  109 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---------------AELYAALATVLYYQASQHMTAQTRAMIDKALA  109 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            355689999999999999999999999988765               5678999999 8899999  999999999999


Q ss_pred             hc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 036950          368 LD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLL  398 (469)
Q Consensus       368 ~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~  398 (469)
                      ++                       ...|+++++++|++.     .....+..+
T Consensus       110 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~~i  158 (177)
T 2e2e_A          110 LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI-----NRTQLVESI  158 (177)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS-----CHHHHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc-----cHHHHHHHH
Confidence            87                       667999999999988     554444433

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.23  E-value=4.4e-07  Score=90.82  Aligned_cols=78  Identities=10%  Similarity=0.166  Sum_probs=65.0

Q ss_pred             eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEE
Q 036950          186 MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLF  264 (469)
Q Consensus       186 ~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~  264 (469)
                      +|+ .|+ .||+.|+++   .+.|+.|.+|.|.++|||+.+|.+|++|++..|.++....||..+        .+|.+++
T Consensus       168 ~i~y~g~-~dG~~fd~~---~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~--------laGk~~~  235 (392)
T 1t11_A          168 SIDFVGS-IDGVEFEGG---KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN--------LKGKAAK  235 (392)
T ss_dssp             EEEEEEE-SSSSCCTTC---EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT--------TSSCEEE
T ss_pred             EEEEEEE-ECCEEccCC---CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC--------CCCCeEE
Confidence            445 666 589999876   267999999999999999999999999999999997555677532        2578999


Q ss_pred             EEEEEeeeeec
Q 036950          265 YEVELVSFIKE  275 (469)
Q Consensus       265 f~vel~~~~~~  275 (469)
                      |+|+|+++...
T Consensus       236 F~V~v~~i~~~  246 (392)
T 1t11_A          236 FAIKVNKVEAR  246 (392)
T ss_dssp             ECCCEEEEEEE
T ss_pred             EEEEEEEEEcC
Confidence            99999999853

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.22  E-value=6.4e-06  Score=67.09  Aligned_cols=69  Identities=19%  Similarity=0.202  Sum_probs=59.3

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..+++.|+|++|+..|.+++...+..               ..++.|+|.||.++|+|++|+..++++|   
T Consensus        27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al---   88 (117)
T 3k9i_A           27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---------------QALRVFYAMVLYNLGRYEQGVELLLKII---   88 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH---
Confidence            4456789999999999999999999999988765               6688999999999999999998887776   


Q ss_pred             HHHHHHHHhhCCCCC
Q 036950          370 KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 ~~~~~~al~l~p~~~  384 (469)
                              .++|++.
T Consensus        89 --------~~~p~~~   95 (117)
T 3k9i_A           89 --------AETSDDE   95 (117)
T ss_dssp             --------HHHCCCH
T ss_pred             --------HhCCCcH
Confidence                    5566666

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.20  E-value=1e-05  Score=69.97  Aligned_cols=90  Identities=13%  Similarity=0.133  Sum_probs=67.1

Q ss_pred             hhhcHHHHHHHHhcCCH----------HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh----CH
Q 036950          290 AGKKKEEGNVLFKAGKY----------ERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK----EY  355 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~----------~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~----~~  355 (469)
                      +..+.+.|+.+...++|          ++|+..|++||.+.|..               ..+|+|++.+|..++    +|
T Consensus        36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~---------------~~A~~~LG~ay~~lg~l~P~~  100 (158)
T 1zu2_A           36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK---------------DEAVWCIGNAYTSFAFLTPDE  100 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc---------------HHHHHHHHHHHHHhcccCcch
Confidence            34456788888888775          59999999999998876               778999999999997    44


Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          356 KQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       356 ~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                      ..|..++++|+    ..|++|++++|++.     ..++.++.+.+.-.
T Consensus       101 ~~a~g~~~eA~----~~~~kAl~l~P~~~-----~y~~al~~~~ka~e  139 (158)
T 1zu2_A          101 TEAKHNFDLAT----QFFQQAVDEQPDNT-----HYLKSLEMTAKAPQ  139 (158)
T ss_dssp             HHHHHHHHHHH----HHHHHHHHHCTTCH-----HHHHHHHHHHTHHH
T ss_pred             hhhhccHHHHH----HHHHHHHHhCCCCH-----HHHHHHHHHHhCHh
Confidence            55555555555    36666778888888     77777666655443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.19  E-value=1e-05  Score=82.66  Aligned_cols=83  Identities=28%  Similarity=0.328  Sum_probs=74.9

Q ss_pred             HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950          286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV  365 (469)
Q Consensus       286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a  365 (469)
                      +.+.+..+...|+.+++.|+|.+|+..|++++...+ +               ..++.++|.||+++|+|++|+.+++++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~---------------~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-D---------------PVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-C---------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-c---------------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            567889999999999999999999999999999764 1               568999999999999999999999999


Q ss_pred             Hhhc-----------------------HHHHHHHHhhCCCCC
Q 036950          366 LELD-----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       366 l~~d-----------------------~~~~~~al~l~p~~~  384 (469)
                      ++++                       ...|++++.++|.+.
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  107 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND  107 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence            9987                       677888999988766

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.19  E-value=1.5e-05  Score=72.71  Aligned_cols=92  Identities=11%  Similarity=0.063  Sum_probs=76.4

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---  369 (469)
                      +...|..+++.|+|.+|+..|.+++...+..               ..++.++|.||.++|+|++|+..++++++++   
T Consensus        45 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           45 AYNCGVCADNIKKYKEAADYFDIAIKKNYNL---------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            3458999999999999999999999876643               6688999999999999999999999999876   


Q ss_pred             ---------------------------HHHHHHHHhhCCC--CCCcchHHHHHHHHHHHHHHHH
Q 036950          370 ---------------------------KLDIKKALEIDPD--NSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       370 ---------------------------~~~~~~al~l~p~--~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                                                 +..|+++++++|+  +.     .+...+..+......
T Consensus       110 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~~~l~~~~~~~~~  168 (228)
T 4i17_A          110 ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKT-----DALYSLGVLFYNNGA  168 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccH-----HHHHHHHHHHHHHHH
Confidence                                       6679999999999  87     777666666544433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.18  E-value=6.8e-06  Score=75.54  Aligned_cols=65  Identities=28%  Similarity=0.356  Sum_probs=55.0

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..++..|+|.+|+..|++++...+..               ..++.|+|.||.++|+|++|+.+++++++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            3445678999999999999999999999877654               5678899999999999999999999988776

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.16  E-value=4.5e-06  Score=79.61  Aligned_cols=63  Identities=16%  Similarity=0.238  Sum_probs=57.5

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+...|..+++.|+|.+|+..|++|+...+..               ..+++|+|.+|.++|+|++|+.++.++++++
T Consensus        40 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  102 (281)
T 2c2l_A           40 YYTNRALCYLKMQQPEQALADCRRALELDGQS---------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLA  102 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45679999999999999999999999987654               6789999999999999999999999999986

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.13  E-value=1.4e-05  Score=80.99  Aligned_cols=98  Identities=18%  Similarity=0.109  Sum_probs=75.8

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc--
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--  369 (469)
                      .+...|..++..|+|++|+..|++|+.+.+.....      ....-....|.|+|.+|..+|+|++|+.++++++++.  
T Consensus        53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~------~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD------QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG------GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            34568999999999999999999999986422100      0011125679999999999999999999999999864  


Q ss_pred             -------------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 036950          370 -------------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKE  400 (469)
Q Consensus       370 -------------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~  400 (469)
                                                     +..|++|++++|++.     ++...+..+..
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~-----~~~~~~~~~~~  183 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP-----EFTSGLAIASY  183 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH
Confidence                                           567899999999998     77666655533

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.12  E-value=4.3e-05  Score=71.00  Aligned_cols=81  Identities=20%  Similarity=0.110  Sum_probs=72.2

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|..++..|+|.+|+..|.+++...+..               ..++.++|.+|..+|+|++|+.++++++++
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~  106 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  106 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            35556788999999999999999999999987654               568899999999999999999999999998


Q ss_pred             c-----------------------HHHHHHHHhhCCCCC
Q 036950          369 D-----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       369 d-----------------------~~~~~~al~l~p~~~  384 (469)
                      +                       ...|+++++++|++.
T Consensus       107 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          107 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            7                       677999999999987

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.11  E-value=1.7e-05  Score=65.85  Aligned_cols=69  Identities=14%  Similarity=0.056  Sum_probs=57.4

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..+.+.|..+++.|+|++|+..|++||.+.+.....        ......+|.|++.||.++++|++|+.+++++|+
T Consensus        43 ~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           43 TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD--------YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh--------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345689999999999999999999999987754322        234577899999999999999999988877763

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.11  E-value=8.5e-06  Score=71.50  Aligned_cols=107  Identities=17%  Similarity=0.199  Sum_probs=86.3

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-  369 (469)
                      ..+...|..+++.|+|.+|+..|++++...|.+               ..++.|+|.+|+++|+|++|+..++++++.+ 
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p   71 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR---------------GDVKLAKADCLLETKQFELAQELLATIPLEYQ   71 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS---------------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence            345688999999999999999999999988766               6789999999999999999999999887652 


Q ss_pred             ----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036950          370 ----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFA  418 (469)
Q Consensus       370 ----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~  418 (469)
                                            ...|+++++++|++.     .+.-.+..+.....+..+.. ..|.++..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~-~~~~~~l~  136 (176)
T 2r5s_A           72 DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNF-----ELACELAVQYNQVGRDEEAL-ELLWNILK  136 (176)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCH-----HHHHHHHHHHHHTTCHHHHH-HHHHHHHT
T ss_pred             ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcccHHHHH-HHHHHHHH
Confidence                                  567888999999998     88888877766655554443 23444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.10  E-value=1e-05  Score=83.27  Aligned_cols=78  Identities=21%  Similarity=0.302  Sum_probs=70.3

Q ss_pred             cccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHH
Q 036950          277 ESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYK  356 (469)
Q Consensus       277 ~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~  356 (469)
                      ....++.+++.+.+..+...|+.+++.|+|.+|+..|++++...+.+               ..++.|+|.||+++|+|+
T Consensus        12 ~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~   76 (537)
T 3fp2_A           12 QLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE---------------PVFYSNISACYISTGDLE   76 (537)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHH
T ss_pred             hhcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHH
Confidence            34567889999999999999999999999999999999999987765               678999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 036950          357 QAEKLCSKVLELD  369 (469)
Q Consensus       357 ~ai~~~~~al~~d  369 (469)
                      +|+..|+++++++
T Consensus        77 ~A~~~~~~al~~~   89 (537)
T 3fp2_A           77 KVIEFTTKALEIK   89 (537)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999776

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.10  E-value=2.1e-05  Score=75.08  Aligned_cols=108  Identities=12%  Similarity=0.106  Sum_probs=89.2

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-  369 (469)
                      ..+...|..++..|++++|+..|++++...|..               ..++.|+|.+|+.+|++++|+..+++++..+ 
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p  182 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---------------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ  182 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---------------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---------------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence            446789999999999999999999999998876               6689999999999999999999999998765 


Q ss_pred             ----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 036950          370 ----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAK  419 (469)
Q Consensus       370 ----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~  419 (469)
                                            ...|++++.++|++.     +++-.+..+.....+..+... .|.++...
T Consensus       183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~-----~~~~~la~~l~~~g~~~~A~~-~l~~~l~~  248 (287)
T 3qou_A          183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDA-----ALATQLALQLHQVGRNEEALE-LLFGHLRX  248 (287)
T ss_dssp             SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccH-----HHHHHHHHHHHHcccHHHHHH-HHHHHHhc
Confidence                                  567899999999999     888888877666555544443 34555544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.08  E-value=6.1e-05  Score=70.20  Aligned_cols=83  Identities=16%  Similarity=0.224  Sum_probs=71.3

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..+++.|+|.+|+..|++++...+..+            ....++.++|.||+++|+|++|+..++++++++
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE------------WAADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc------------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            45667899999999999999999999999876542            225688999999999999999999999999973


Q ss_pred             ----------------------------------HHHHHHHHhhCCCCC
Q 036950          370 ----------------------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 ----------------------------------~~~~~~al~l~p~~~  384 (469)
                                                        +..|+++++.+|++.
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence                                              346888899999987

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.07  E-value=1.9e-05  Score=73.47  Aligned_cols=53  Identities=11%  Similarity=-0.029  Sum_probs=35.4

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHH
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEY  395 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l  395 (469)
                      ..+|.++|.||.++|+|++|+.+++++++++                       +..|+++++++|++.     .+...+
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~l  148 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP-----KVFYEL  148 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH-----HHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH-----HHHHHH
Confidence            3346677777777777777777777777765                       455666666677766     555555


Q ss_pred             H
Q 036950          396 K  396 (469)
Q Consensus       396 ~  396 (469)
                      .
T Consensus       149 ~  149 (272)
T 3u4t_A          149 G  149 (272)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.07  E-value=2.2e-05  Score=82.34  Aligned_cols=108  Identities=6%  Similarity=-0.004  Sum_probs=87.7

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-  369 (469)
                      ..+...|..+++.|+|++|+..|++++...+.+               ..++.|+|.||.++|+|++|+.+++++++++ 
T Consensus        24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   88 (568)
T 2vsy_A           24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---------------PEAVARLGRVRWTQQRHAEAAVLLQQASDAAP   88 (568)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            456788999999999999999999999987654               6688999999999999999999999999988 


Q ss_pred             ----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhh
Q 036950          370 ----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV---REYNKKDVQFYGNIFAK  419 (469)
Q Consensus       370 ----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~---~~~~~~e~~~~~~mf~~  419 (469)
                                            .+.|+++++++|++.     .+...+..+...+   .+..+. ...|.+.+..
T Consensus        89 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~g~~~~A-~~~~~~al~~  157 (568)
T 2vsy_A           89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEP-----YITAQLLNWRRRLCDWRALDVL-SAQVRAAVAQ  157 (568)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCCTTHHHH-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhccccHHHH-HHHHHHHHhc
Confidence                                  678999999999998     8888777777666   443332 2334554443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.07  E-value=2.8e-05  Score=69.75  Aligned_cols=62  Identities=13%  Similarity=0.021  Sum_probs=51.2

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..+...|..+++.|+|.+|+..|.+++...+..               ..+++|+|.||+++|+|++|+.+++++++
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~   99 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAIKDLKEALI   99 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            345678888888888888888888888876544               56788999999999999999998888887

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.04  E-value=4e-05  Score=78.81  Aligned_cols=93  Identities=15%  Similarity=-0.022  Sum_probs=79.9

Q ss_pred             hhhcHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          290 AGKKKEEGNVLFKAGKY-ERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~-~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      +..+...|..++..|+| .+|+..|++|+...+..               ..+|.|+|.||+++|+|++|+.+++++|++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---------------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            44566899999999999 99999999999987765               668999999999999999999999999987


Q ss_pred             c-------------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          369 D-------------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       369 d-------------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                      +                               +..|++|++++|++.     .+...+..+....
T Consensus       167 ~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~  226 (474)
T 4abn_A          167 CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG-----RSWYILGNAYLSL  226 (474)
T ss_dssp             CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHH
Confidence            6                               456888999999998     7777776666554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.04  E-value=8.7e-05  Score=67.78  Aligned_cols=67  Identities=12%  Similarity=0.143  Sum_probs=57.5

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|..+++.|+|++|+..|++++...+..+.            ...+++++|.||+++|+|++|+..++++++.+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            45678899999999999999999999998765421            24578999999999999999999999999875

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.04  E-value=1.4e-05  Score=65.56  Aligned_cols=64  Identities=16%  Similarity=0.135  Sum_probs=58.6

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|..+++.|+|.+|+..|++++.+.+..               ..+|.|+|.||.++|+|++|+.+++++++++
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---------------VRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            345689999999999999999999999987765               6789999999999999999999999999987

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.04  E-value=1.4e-05  Score=68.95  Aligned_cols=66  Identities=9%  Similarity=0.058  Sum_probs=60.4

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+.-+.+.|..+++.|+|.+|+..|++||.+.+..               ..+|+++|.||+.+|+|++|+.+++++|++
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN---------------EKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc---------------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            34556789999999999999999999999987765               778999999999999999999999999999


Q ss_pred             c
Q 036950          369 D  369 (469)
Q Consensus       369 d  369 (469)
                      +
T Consensus       127 ~  127 (162)
T 3rkv_A          127 H  127 (162)
T ss_dssp             C
T ss_pred             C
Confidence            9

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.03  E-value=1.5e-05  Score=62.87  Aligned_cols=81  Identities=19%  Similarity=0.213  Sum_probs=65.9

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcH
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDK  370 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~  370 (469)
                      ..+...|..++..|+|.+|+..|.+++...+..               ..++.|+|.+|.++++|++|+..+++++    
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~----   67 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---------------SKYWLMKGKALYNLERYEEAVDCYNYVI----   67 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH----
Confidence            345678999999999999999999999987654               5578999999999999999988777766    


Q ss_pred             HHHHHHHhhCCC--CCCcchHHHHHHHHHHHHHH
Q 036950          371 LDIKKALEIDPD--NSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       371 ~~~~~al~l~p~--~~~~~~~~~~~~l~~~~~~~  402 (469)
                             +++|+  +.     .+...+..+...+
T Consensus        68 -------~~~~~~~~~-----~~~~~l~~~~~~~   89 (112)
T 2kck_A           68 -------NVIEDEYNK-----DVWAAKADALRYI   89 (112)
T ss_dssp             -------HTSCCTTCH-----HHHHHHHHHHTTC
T ss_pred             -------HhCcccchH-----HHHHHHHHHHHHH
Confidence                   66788  76     6666666665544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.03  E-value=1.9e-05  Score=70.92  Aligned_cols=78  Identities=21%  Similarity=0.150  Sum_probs=68.0

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|+.++..|+|.+|+..|++++.   ..               ..++.|+|.||+++|+|++|+.++++++++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~---~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   66 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD---PH---------------SRICFNIGCMYTILKNMTEAEKAFTRSINR   66 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS---CC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC---CC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455677899999999999999999999962   11               468999999999999999999999999998


Q ss_pred             c-----------------------HHHHHHHHhhCCCCC
Q 036950          369 D-----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       369 d-----------------------~~~~~~al~l~p~~~  384 (469)
                      +                       +..|++++++.|++.
T Consensus        67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            7                       678999999888764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.02  E-value=7.1e-05  Score=65.47  Aligned_cols=107  Identities=11%  Similarity=0.081  Sum_probs=82.0

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-  369 (469)
                      ..+...|..+++.|++++|+..|.+++...+..               ..++.+++.++...++++.|+..+.++++++ 
T Consensus        40 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~  104 (184)
T 3vtx_A           40 ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS---------------AEAYYILGSANFMIDEKQAAIDALQRAIALNT  104 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            345678999999999999999999999887655               5567777888888888888888888888776 


Q ss_pred             ----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036950          370 ----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFA  418 (469)
Q Consensus       370 ----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~  418 (469)
                                            +..|+++++++|++.     .+...+..+...+.+..+.. ..|.+.+.
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~lg~~~~~~g~~~~A~-~~~~~al~  169 (184)
T 3vtx_A          105 VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI-----RAYQSIGLAYEGKGLRDEAV-KYFKKALE  169 (184)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh-----hHHHHHHHHHHHCCCHHHHH-HHHHHHHh
Confidence                                  567888889999998     88888888877666554443 33454443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.02  E-value=1.7e-05  Score=85.43  Aligned_cols=96  Identities=13%  Similarity=0.124  Sum_probs=82.1

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc--
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--  369 (469)
                      .+...|..+++.|+|++|+..|++++...+.+               ..+|+|+|.+|+++|+|++|+.++++||+++  
T Consensus       435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  499 (681)
T 2pzi_A          435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWR---------------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG  499 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCcch---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34578999999999999999999999988766               6789999999999999999999999999998  


Q ss_pred             --------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036950          370 --------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNK  407 (469)
Q Consensus       370 --------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~  407 (469)
                                          +..|++|++++|++.     .+...+..+...+.+..+
T Consensus       500 ~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~-----~a~~~lg~~~~~~g~~~~  552 (681)
T 2pzi_A          500 ELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVI-----SAAFGLARARSAEGDRVG  552 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHH
T ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchH-----HHHHHHHHHHHHcCCHHH
Confidence                                236899999999998     887777777665554443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.01  E-value=4.7e-05  Score=73.35  Aligned_cols=87  Identities=24%  Similarity=0.261  Sum_probs=76.0

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|+.++..|+|.+|+..|++++...+..               ..++.++|.||+.+|+|++|+..++++++++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIALK   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            4567789999999999999999999999987654               5689999999999999999999999999987


Q ss_pred             -----------------------HHHHHHHHhhCC---CCCCcchHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDP---DNSLEAGWGVRMEYK  396 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p---~~~~~~~~~~~~~l~  396 (469)
                                             ...|+++++++|   ++.     .+...+.
T Consensus        68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~l~  115 (359)
T 3ieg_A           68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK-----EAESQLV  115 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH-----HHHHHHH
T ss_pred             CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH-----HHHHHHH
Confidence                                   678999999999   777     6665554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.01  E-value=2.5e-05  Score=65.89  Aligned_cols=63  Identities=21%  Similarity=0.157  Sum_probs=57.1

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+...|..+++.|+|++|+..|.+++.+.+.+               ..++.|+|.||..+|+|++|+.+++++++++
T Consensus        54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           54 YFLGLGACRQSLGLYEQALQSYSYGALMDINE---------------PRFPFHAAECHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34578999999999999999999999988765               5578999999999999999999999999876

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.98  E-value=4.1e-05  Score=61.77  Aligned_cols=62  Identities=8%  Similarity=-0.053  Sum_probs=54.7

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+...|..++..|+|++|+..|.+++...+..               ..++.|+|.||.++|++++|+..+++++++
T Consensus        21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A           21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---------------SVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45688999999999999999999999987654               567899999999999999999988887754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.98  E-value=9.3e-05  Score=59.92  Aligned_cols=90  Identities=27%  Similarity=0.299  Sum_probs=68.4

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---  369 (469)
                      +...|..++..|++.+|+..|.+++...+..               ..++.++|.++...+++++|+..++++++.+   
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   68 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS   68 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence            4567888889999999999999998865433               4567888999999999999999998888765   


Q ss_pred             --------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          370 --------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       370 --------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                                          ...+++++...|++.     .+...+..+....
T Consensus        69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~  116 (136)
T 2fo7_A           69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA-----EAWYNLGNAYYKQ  116 (136)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHH
Confidence                                456777777888777     6655555554433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.97  E-value=7.5e-05  Score=68.37  Aligned_cols=109  Identities=17%  Similarity=0.124  Sum_probs=62.3

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC------------CC-HHHH---HH---HHH-------HHHHhH
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSS------------FS-DEEK---QQ---AKV-------LKITCN  342 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~------------~~-~e~~---~~---~~~-------l~~~~~  342 (469)
                      .+..+...|+.++..|+|.+|+..|.+++... ....            .. ++-.   ..   ..+       ....++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            46667778888888888888888888887765 2210            00 0000   00   000       114556


Q ss_pred             hHHHHHHHHhhCHHHHHHHHHHHHhhc---------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          343 LNNAACKLKLKEYKQAEKLCSKVLELD---------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       343 ~N~a~~~~kl~~~~~ai~~~~~al~~d---------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                      .++|.||.++++|++|+..++++++++               ...+++++..+|++.     .+...+..+.....
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKA-----EEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH-----HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchH-----HHHHHHHHHHHHhc
Confidence            666666666666666666666666654               445555666666665     55555555544433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.96  E-value=1.9e-05  Score=67.46  Aligned_cols=63  Identities=21%  Similarity=0.114  Sum_probs=57.2

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+...|..+++.|+|++|+..|.+++.+.+.+               ..+++|+|.||+.+|++++|+.+++++++++
T Consensus        57 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           57 FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---------------PRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            34578999999999999999999999988765               5578999999999999999999999999875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.95  E-value=2.2e-05  Score=67.74  Aligned_cols=64  Identities=16%  Similarity=0.094  Sum_probs=58.8

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|..+++.|+|.+|+..|.+++.+.+..               ..+|.|+|.||.++|+|++|+.+++++|+++
T Consensus        46 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           46 IYLSNRAAAYSASGQHEKAAEDAELATVVDPKY---------------SKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            345689999999999999999999999987765               6789999999999999999999999999988

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.95  E-value=0.00013  Score=62.79  Aligned_cols=94  Identities=18%  Similarity=0.187  Sum_probs=71.9

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc--
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--  369 (469)
                      .+...|..++..|++.+|+..|.+++...+..               ..++.++|.+|..+++|++|+..++++++.+  
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  108 (186)
T 3as5_A           44 VALHLGIAYVKTGAVDRGTELLERSLADAPDN---------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI  108 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH
Confidence            34567888888888888888888888875543               4577888888999999999999888888876  


Q ss_pred             ---------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950          370 ---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY  405 (469)
Q Consensus       370 ---------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~  405 (469)
                                           ...++++++.+|++.     .+...+..+.......
T Consensus       109 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~~~~  160 (186)
T 3as5_A          109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG-----KVHRAIAFSYEQMGRH  160 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch-----HHHHHHHHHHHHcCCH
Confidence                                 567788888888887     7776666666554433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.93  E-value=3.9e-05  Score=78.89  Aligned_cols=98  Identities=16%  Similarity=0.032  Sum_probs=84.1

Q ss_pred             hhcHHHHHHHHhc---------CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHh--------h
Q 036950          291 GKKKEEGNVLFKA---------GKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL--------K  353 (469)
Q Consensus       291 ~~~k~~Gn~~fk~---------~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl--------~  353 (469)
                      ..+...|..++..         |+|++|+..|++|+.+.+.+               ..++.|+|.||+.+        +
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD---------------GRSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHHHhhccccc
Confidence            3456788889998         99999999999999987765               66889999999999        9


Q ss_pred             CHHHHHHHHHHHHhhc--------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036950          354 EYKQAEKLCSKVLELD--------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNK  407 (469)
Q Consensus       354 ~~~~ai~~~~~al~~d--------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~  407 (469)
                      +|++|+.+++++++++                          +..|++|++++|++.     .+...+..+...+.+..+
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-----~a~~~l~~~~~~lg~~~e  310 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP-----EPQQREQQLLEFLSRLTS  310 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHHH
Confidence            9999999999999965                          678999999999999     888888887777665544


Q ss_pred             H
Q 036950          408 K  408 (469)
Q Consensus       408 ~  408 (469)
                      .
T Consensus       311 A  311 (474)
T 4abn_A          311 L  311 (474)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.91  E-value=0.00011  Score=66.79  Aligned_cols=88  Identities=18%  Similarity=0.123  Sum_probs=50.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----  369 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----  369 (469)
                      ..|..++..|+|++|+..|.+++...+..               ..++.++|.+|+++|+|++|+..++++++++     
T Consensus        96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  160 (243)
T 2q7f_A           96 GAGNVYVVKEMYKEAKDMFEKALRAGMEN---------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE  160 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTCCS---------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence            44555555555555555555555544332               3356666666666666666666666666654     


Q ss_pred             ------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          370 ------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       370 ------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                                        +..|+++++.+|++.     .+...+..+....
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~  206 (243)
T 2q7f_A          161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA-----DAFYNAGVTYAYK  206 (243)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHc
Confidence                              445666666666665     5555555444433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.90  E-value=9.1e-05  Score=70.87  Aligned_cols=67  Identities=13%  Similarity=0.191  Sum_probs=52.8

Q ss_pred             cCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-------------
Q 036950          303 AGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-------------  369 (469)
Q Consensus       303 ~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-------------  369 (469)
                      .|+|++|+..|++++...+.+               ..+++|+|.||+++|+|++|+..++++|+++             
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~  243 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPT---------------LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL  243 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            356666666666666654433               5689999999999999999999999999987             


Q ss_pred             -----------HHHHHHHHhhCCCCC
Q 036950          370 -----------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 -----------~~~~~~al~l~p~~~  384 (469)
                                 .+.++++++++|++.
T Consensus       244 ~~~~g~~~eaa~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          244 SQHLGKPPEVTNRYLSQLKDAHRSHP  269 (291)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence                       345678888888887

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.90  E-value=0.00019  Score=66.76  Aligned_cols=78  Identities=10%  Similarity=0.097  Sum_probs=60.5

Q ss_pred             hcHHHHHHHHh--------cCCHHHHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHH
Q 036950          292 KKKEEGNVLFK--------AGKYERASKRYEQAVNYIGYDSSFSD--EEKQQAKVLKITCNLNNAACKLKLKEYKQAEKL  361 (469)
Q Consensus       292 ~~k~~Gn~~fk--------~~~~~~A~~~Y~~al~~~~~~~~~~~--e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~  361 (469)
                      .+...|..+++        .|+|.+|+..|++++...|.......  .............+.++|.||+++|+|++|+..
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            45678999999        99999999999999998876543221  112233334455579999999999999999999


Q ss_pred             HHHHHhhc
Q 036950          362 CSKVLELD  369 (469)
Q Consensus       362 ~~~al~~d  369 (469)
                      ++++++..
T Consensus       171 ~~~~l~~~  178 (261)
T 3qky_A          171 YEAVFDAY  178 (261)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHC
Confidence            99999764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.90  E-value=4.3e-05  Score=74.42  Aligned_cols=78  Identities=17%  Similarity=0.147  Sum_probs=63.3

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-  369 (469)
                      ..+...|..+++.|+|++|+..|++++...+..               ..++.|+|.||.++|+|++|+..++++++++ 
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  282 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------------YLLWNKLGATLANGNQSEEAVAAYRRALELQP  282 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            344567888899999999999999999876544               5578889999999999999999999988876 


Q ss_pred             ----------------------HHHHHHHHhhCCCC
Q 036950          370 ----------------------KLDIKKALEIDPDN  383 (469)
Q Consensus       370 ----------------------~~~~~~al~l~p~~  383 (469)
                                            ...|+++++++|++
T Consensus       283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence                                  56677777777776

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.89  E-value=7.3e-05  Score=64.49  Aligned_cols=96  Identities=20%  Similarity=0.212  Sum_probs=79.9

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|..++..|+|.+|+..|.+++...+..               ..++.++|.+|..+|++++|+..++++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   71 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---------------VDVALHLGIAYVKTGAVDRGTELLERSLAD   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            35566789999999999999999999999876543               567899999999999999999999999998


Q ss_pred             c-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          369 D-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       369 d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                      +                       ...+++++..+|++.     .+...+..+......
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~~~  125 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF-----NVRFRLGVALDNLGR  125 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH-----HHHHHHHHHHHHcCc
Confidence            6                       567889999999988     776666665544433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.88  E-value=5.5e-05  Score=72.19  Aligned_cols=71  Identities=28%  Similarity=0.323  Sum_probs=58.7

Q ss_pred             hhhcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          290 AGKKKEEGNVLFKA-GKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       290 a~~~k~~Gn~~fk~-~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      +..+.+.|..+... |+|++|+..|++|+.+.+....         ......++.|+|.+|.++|+|++|+.++++++++
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  187 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45667889999996 9999999999999998764321         1223567999999999999999999999999975


Q ss_pred             c
Q 036950          369 D  369 (469)
Q Consensus       369 d  369 (469)
                      .
T Consensus       188 ~  188 (292)
T 1qqe_A          188 S  188 (292)
T ss_dssp             T
T ss_pred             H
Confidence            4

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.88  E-value=6.6e-05  Score=73.31  Aligned_cols=77  Identities=16%  Similarity=0.178  Sum_probs=65.5

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc--
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--  369 (469)
                      .+...|..+++.|+|.+|+..|++++...+..               ..++.|++.||.++|+|++|+..++++++++  
T Consensus       215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  279 (365)
T 4eqf_A          215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---------------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPG  279 (365)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            45578899999999999999999999987654               5678999999999999999999999999887  


Q ss_pred             ---------------------HHHHHHHHhhCCCC
Q 036950          370 ---------------------KLDIKKALEIDPDN  383 (469)
Q Consensus       370 ---------------------~~~~~~al~l~p~~  383 (469)
                                           ...|+++++++|++
T Consensus       280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence                                 56788888887774

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.88  E-value=7.8e-05  Score=71.68  Aligned_cols=85  Identities=13%  Similarity=0.076  Sum_probs=67.4

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+.+.|..+.. |+|++|+..|++|+.+.+....         ......++.|+|.+|.++|+|++|+.++++++++
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34556677888877 8888888888888887753211         1234678999999999999999999999999986


Q ss_pred             c-----------------------------HHHHHHHHhhCCCCC
Q 036950          369 D-----------------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       369 d-----------------------------~~~~~~al~l~p~~~  384 (469)
                      .                             +..|++++ ++|+..
T Consensus       185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            3                             56788999 999876

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.87  E-value=3.4e-05  Score=63.45  Aligned_cols=63  Identities=14%  Similarity=-0.100  Sum_probs=55.1

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      ..+...|..++..|++.+|+..|++|+.+.+..               ..++.|+|.||.++|++++|+..++++|++
T Consensus        52 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           52 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---------------IAVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345579999999999999999999999998765               668899999999999999999988887743

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.87  E-value=0.00017  Score=65.46  Aligned_cols=94  Identities=17%  Similarity=0.213  Sum_probs=79.1

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-  369 (469)
                      ..+...|..+++.|+|.+|+..|.+++...+..               ..++.++|.+|.++|+|++|+..++++++++ 
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  122 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELDSSA---------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM  122 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            455678999999999999999999999986644               6788999999999999999999999999987 


Q ss_pred             ----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          370 ----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       370 ----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                                            ...++++++++|++.     .+...+..+......
T Consensus       123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~  174 (243)
T 2q7f_A          123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT-----EARFQFGMCLANEGM  174 (243)
T ss_dssp             CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH-----HHHHHHHHHHHHcCC
Confidence                                  567899999999988     776666666554443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.87  E-value=0.00015  Score=70.79  Aligned_cols=91  Identities=9%  Similarity=-0.015  Sum_probs=60.9

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---  369 (469)
                      +...|..+++.|+|.+|+..|.+++...+..               ..++.|+|.||.++|+|++|+..++++++++   
T Consensus       102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  166 (365)
T 4eqf_A          102 WQFLGITQAENENEQAAIVALQRCLELQPNN---------------LKALMALAVSYTNTSHQQDACEALKNWIKQNPKY  166 (365)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc
Confidence            3455666666666666666666666654433               5577888888888888888888888888764   


Q ss_pred             ------------------------------HHHHHHHHhhCCC--CCCcchHHHHHHHHHHHHHHH
Q 036950          370 ------------------------------KLDIKKALEIDPD--NSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       370 ------------------------------~~~~~~al~l~p~--~~~~~~~~~~~~l~~~~~~~~  403 (469)
                                                    +..|+++++++|+  +.     .+...+..+.....
T Consensus       167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~~~l~~~~~~~g  227 (365)
T 4eqf_A          167 KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP-----DLQTGLGVLFHLSG  227 (365)
T ss_dssp             HCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH-----HHHHHHHHHHHHHT
T ss_pred             hHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH-----HHHHHHHHHHHHCC
Confidence                                          4567778888888  55     55555555544433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.86  E-value=0.00012  Score=75.36  Aligned_cols=79  Identities=11%  Similarity=0.063  Sum_probs=64.6

Q ss_pred             HHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHH
Q 036950          284 QEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCS  363 (469)
Q Consensus       284 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~  363 (469)
                      .+.+..+..+.+....+..+|+|++|+..|++++......-..+       ....+..++|+|.+|..+|+|++|+..+.
T Consensus       303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  375 (490)
T 3n71_A          303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYAR  375 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            34566777788888889999999999999999999876432111       23357789999999999999999999999


Q ss_pred             HHHhhc
Q 036950          364 KVLELD  369 (469)
Q Consensus       364 ~al~~d  369 (469)
                      ++|++.
T Consensus       376 ~aL~i~  381 (490)
T 3n71_A          376 RMVDGY  381 (490)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999886

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.85  E-value=6.6e-05  Score=74.08  Aligned_cols=63  Identities=21%  Similarity=0.208  Sum_probs=44.6

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+...|+.+++.|+|++|+..|++++...|..               ...|.|++.++.++|++++|+..++++++++
T Consensus        69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (388)
T 1w3b_A           69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDF---------------IDGYINLAAALVAAGDMEGAVQAYVSALQYN  131 (388)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45678888888888888888888888876544               3455666666666666666666666666554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.84  E-value=6.6e-05  Score=69.76  Aligned_cols=90  Identities=16%  Similarity=0.086  Sum_probs=75.7

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---  369 (469)
                      +...|..++..|+|++|+..|.+++...+..               ..++.|+|.||.++|+|++|+.+++++++++   
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  141 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTR---------------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD  141 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence            5688999999999999999999999977654               4578999999999999999999999999887   


Q ss_pred             --------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          370 --------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       370 --------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                                          ...|+++++++|++.     .+...+..+...+
T Consensus       142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~~~~~~~~  189 (272)
T 3u4t_A          142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY-----IGYLWRARANAAQ  189 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch-----HHHHHHHHHHHHc
Confidence                                567888999999987     6666666555544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.83  E-value=0.00017  Score=68.70  Aligned_cols=87  Identities=13%  Similarity=-0.009  Sum_probs=71.0

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHh-hCHHHHHHHHHHHHh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL-KEYKQAEKLCSKVLE  367 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl-~~~~~ai~~~~~al~  367 (469)
                      .+..+.+.|+.+.+.|+|++|+..|.+|+.+.+....         ......++.|+|.+|..+ |+|++|+.++++||+
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~  146 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---------FRRGANFKFELGEILENDLHDYAKAIDCYELAGE  146 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            3566778899999999999999999999988753311         122356889999999995 999999999999998


Q ss_pred             hc-----------------------------HHHHHHHHhhCCCCC
Q 036950          368 LD-----------------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       368 ~d-----------------------------~~~~~~al~l~p~~~  384 (469)
                      +.                             +..|++++++.|++.
T Consensus       147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  192 (292)
T 1qqe_A          147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence            74                             567899999999876

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.81  E-value=0.0002  Score=65.67  Aligned_cols=89  Identities=18%  Similarity=0.119  Sum_probs=54.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh--hc--
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE--LD--  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~--~d--  369 (469)
                      ...|..++..|+|++|+..|.+++...+..               ..++.++|.+|.++|+|++|+..++++++  .+  
T Consensus        75 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  139 (252)
T 2ho1_A           75 AALAVVFQTEMEPKLADEEYRKALASDSRN---------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE  139 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc
Confidence            345555666666666666666666554332               34566777777777777777777777776  33  


Q ss_pred             ---------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          370 ---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       370 ---------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                                           ...|+++++++|++.     .+...+..+....
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~  188 (252)
T 2ho1_A          140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP-----SVALEMADLLYKE  188 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-----HHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHc
Confidence                                 455666677777666     5555555544433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.79  E-value=9.7e-05  Score=70.35  Aligned_cols=72  Identities=13%  Similarity=0.164  Sum_probs=60.6

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|+.++..|+|++|+..|.+|+..+...+.        .......+++|+|.||.++|+|++|+.+++++|++.
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~  226 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            445778999999999999999999999987754322        134557799999999999999999999999999654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.79  E-value=9.9e-06  Score=87.30  Aligned_cols=87  Identities=11%  Similarity=0.101  Sum_probs=71.5

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc--
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--  369 (469)
                      .+...|..+++.|+|++|+..|++|+.+.+.+               ..+|+|+|.||.++|+|++ +.++++||+++  
T Consensus       469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~  532 (681)
T 2pzi_A          469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---------------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDG  532 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence            34568999999999999999999999998766               5577888888888888888 88888888877  


Q ss_pred             ---------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950          370 ---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK  399 (469)
Q Consensus       370 ---------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  399 (469)
                                           +.+|++|++++|++.     .+...+..+.
T Consensus       533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~a~~~~~~~~  578 (681)
T 2pzi_A          533 VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFT-----TARLTSAVTL  578 (681)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHH-----HHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccH-----HHHHHHHHHH
Confidence                                 567888888889887     6666655553

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.79  E-value=0.00011  Score=71.46  Aligned_cols=80  Identities=18%  Similarity=0.085  Sum_probs=70.8

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..+++.|+|.+|+..|++++...+..               ..++.++|.||.++|+|++|+..++++++++
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  128 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---------------MEAWQYLGTTQAENEQELLAISALRRCLELK  128 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence            3445688999999999999999999999976654               5688999999999999999999999999987


Q ss_pred             -----------------------HHHHHHHHhhCCCCC
Q 036950          370 -----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~  384 (469)
                                             +..+++++.++|++.
T Consensus       129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  166 (368)
T 1fch_A          129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  166 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence                                   677899999999887

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.79  E-value=7.2e-05  Score=61.81  Aligned_cols=64  Identities=16%  Similarity=0.217  Sum_probs=58.2

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|..+++.|+|..|+..|.+++...+..               ..++.|+|.||.++|+|++|+.++.++++++
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           44 VYYTNRALCYLKMQQPEQALADCRRALELDGQS---------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence            345678999999999999999999999987754               6689999999999999999999999999987

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.77  E-value=0.00018  Score=70.87  Aligned_cols=60  Identities=23%  Similarity=0.123  Sum_probs=30.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..|+.+...|+|++|+..|.+++...+..               ..+|.|++.+|.++|++++|+..++++++++
T Consensus       140 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  199 (388)
T 1w3b_A          140 DLGNLLKALGRLEEAKACYLKAIETQPNF---------------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD  199 (388)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            34555555555555555555555543322               3344555555555555555555555555444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.77  E-value=0.00033  Score=62.47  Aligned_cols=91  Identities=13%  Similarity=0.014  Sum_probs=57.8

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHh-hCHHHHHHHHHHHHh--hc
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL-KEYKQAEKLCSKVLE--LD  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl-~~~~~ai~~~~~al~--~d  369 (469)
                      +...|..++..|+|.+|+..|.+++...+..               ..++.++|.+|..+ |+|++|+..++++++  .+
T Consensus        45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~  109 (225)
T 2vq2_A           45 WLVRAEIYQYLKVNDKAQESFRQALSIKPDS---------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTY  109 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC
Confidence            3445666666666666666666666654432               34567777777777 777777777777776  22


Q ss_pred             -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                                             ...++++++.+|++.     .+...+..+.....
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~~  161 (225)
T 2vq2_A          110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP-----PAFKELARTKMLAG  161 (225)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-----hHHHHHHHHHHHcC
Confidence                                   456667777777766     55555555544433

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.77  E-value=5.2e-05  Score=76.80  Aligned_cols=86  Identities=16%  Similarity=0.075  Sum_probs=68.3

Q ss_pred             CCCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCC
Q 036950           66 NPKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAV  143 (469)
Q Consensus        66 ~~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~i  143 (469)
                      .++.||.|+++|+++ .||..|+++  .++.+.+|++.  + |+++|.||++|++..|.+..                  
T Consensus       154 ~a~~gD~V~id~~~~-~dG~~~~~~~~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF------------------  211 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY-NEEGKKLTSREYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY------------------  211 (433)
T ss_dssp             CCCTTSEEEEEEEEE-CTTSCEEEEEEEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE------------------
T ss_pred             ccCCCCEEEEEEEEE-ECCEECcCCCCCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee------------------
Confidence            468999999999998 499999976  66777788776  4 99999999999999999843                  


Q ss_pred             CCCceEEEeEeeeeeccccccccchhhhhhh
Q 036950          144 PSNANLHITLEMVSWKTVSDITKDKKVLKKI  174 (469)
Q Consensus       144 p~~~~l~~~v~l~~~~~~~dv~~d~~l~k~i  174 (469)
                       +|.+..|.|+|.++....-..-|..+.+.+
T Consensus       212 -aGk~a~F~VtV~~Ik~~~lPEldDEfak~~  241 (433)
T 3gty_X          212 -EGKKYTYKLEVEEVYKRTLPEIGDELAKSV  241 (433)
T ss_dssp             -TTEEEEEEEEEEEEEEECCCCSSHHHHHTT
T ss_pred             -CCCeEEEEEEEEEEEEecCCcccHHHHHHh
Confidence             256889999999997744334455566554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.76  E-value=8.7e-05  Score=70.68  Aligned_cols=96  Identities=21%  Similarity=0.080  Sum_probs=72.3

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc--
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--  369 (469)
                      .+...|..+++.|+|++|+..|++++...+.......      ......++.|+|.||.++|+|++|+..++++++++  
T Consensus       195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            3457899999999999999999999998753221100      00114588999999999999999999999999876  


Q ss_pred             ---------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 036950          370 ---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLL  398 (469)
Q Consensus       370 ---------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~  398 (469)
                                           ...|+++++++|++.     .+...+..+
T Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~  313 (330)
T 3hym_B          269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT-----FSVTMLGHC  313 (330)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH-----HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch-----HHHHHHHHH
Confidence                                 566777777888877     666555544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.72  E-value=4.5e-05  Score=61.90  Aligned_cols=88  Identities=20%  Similarity=0.218  Sum_probs=61.7

Q ss_pred             hcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCC
Q 036950          302 KAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDP  381 (469)
Q Consensus       302 k~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p  381 (469)
                      ..|+|++|+..|++++..-..            .+....++.|+|.||+++|+|++|+..+++++           +++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-----------~~~p   58 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQ------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-----------KQFP   58 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHCT
T ss_pred             CCCcHHHHHHHHHHHHHcCCC------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HhCC
Confidence            358999999999999985210            12236789999999999999999998777766           7789


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036950          382 DNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFA  418 (469)
Q Consensus       382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~  418 (469)
                      ++.     .+...+..+...+.+..+... .|.+.+.
T Consensus        59 ~~~-----~~~~~l~~~~~~~g~~~~A~~-~~~~al~   89 (117)
T 3k9i_A           59 NHQ-----ALRVFYAMVLYNLGRYEQGVE-LLLKIIA   89 (117)
T ss_dssp             TCH-----HHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred             Cch-----HHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence            888     888777777766665554443 3444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.72  E-value=2e-05  Score=68.78  Aligned_cols=107  Identities=11%  Similarity=0.075  Sum_probs=75.7

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-  369 (469)
                      .++...++.++..|+|.+|+..|.+++...+..               ..++.++|.||+.+|+|++|+..++++++++ 
T Consensus        11 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   75 (177)
T 2e2e_A           11 QRQRDPLHQFASQQNPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRG   75 (177)
T ss_dssp             CCSSTTTCCCC-----CCCCHHHHHHHHHCCSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhhhhhhccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            344456677888999999999999999987755               5688999999999999999999999999887 


Q ss_pred             -------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036950          370 -------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFA  418 (469)
Q Consensus       370 -------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~  418 (469)
                                               ...|+++++++|++.     .+...+..+........+.. ..|.+.+.
T Consensus        76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~-~~~~~al~  143 (177)
T 2e2e_A           76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI-----TALMLLASDAFMQANYAQAI-ELWQKVMD  143 (177)
T ss_dssp             SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcccHHHHH-HHHHHHHh
Confidence                                     345677777888887     77666666655554443332 23444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.72  E-value=0.00025  Score=65.05  Aligned_cols=108  Identities=16%  Similarity=0.100  Sum_probs=80.8

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc--
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--  369 (469)
                      .+...|..++..|+|++|+..|.+++. .+..+            ....++.++|.+|+++|++++|+..++++++++  
T Consensus       107 ~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  173 (252)
T 2ho1_A          107 VLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYP------------ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN  173 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCT------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCc------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence            345689999999999999999999998 11111            125678999999999999999999999999887  


Q ss_pred             ---------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036950          370 ---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFA  418 (469)
Q Consensus       370 ---------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~  418 (469)
                                           ...++++++.+|++.     .+...+..+........+. .+.+.++..
T Consensus       174 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~A-~~~~~~~~~  237 (252)
T 2ho1_A          174 QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA-----RSLLLGIRLAKVFEDRDTA-ASYGLQLKR  237 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH-----HHHHHHHHHHHHTTCHHHH-HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-----HHHHHHHHHHHHccCHHHH-HHHHHHHHH
Confidence                                 567888899999888     7777666665554444332 233444443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.71  E-value=0.00022  Score=57.66  Aligned_cols=62  Identities=27%  Similarity=0.363  Sum_probs=53.9

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +...|..++..|++.+|+..|.+++...+..               ..++.++|.++..+|+|++|+..++++++..
T Consensus        38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~   99 (136)
T 2fo7_A           38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   99 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            4567888999999999999999999876543               4578899999999999999999999999876

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.71  E-value=0.00016  Score=61.90  Aligned_cols=83  Identities=17%  Similarity=0.196  Sum_probs=64.8

Q ss_pred             hcHHHHHHHHhcC---CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          292 KKKEEGNVLFKAG---KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       292 ~~k~~Gn~~fk~~---~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      ...+-|..+.+..   ++++|+..++..++.-  .    +       ....-|++|+|.+|+|+++|.+|+.+|+.+|  
T Consensus        34 ~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~----p-------~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL--   98 (152)
T 1pc2_A           34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--S----K-------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLL--   98 (152)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--C----H-------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--C----c-------cchHHHHHHHHHHHHHccCHHHHHHHHHHHH--
Confidence            3446777888877   6778998888888743  0    0       1235688999999999999999999888776  


Q ss_pred             cHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          369 DKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       369 d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                               +++|+|.     +++...+.++++++
T Consensus        99 ---------~ieP~n~-----QA~~Lk~~ie~~~~  119 (152)
T 1pc2_A           99 ---------QTEPQNN-----QAKELERLIDKAMK  119 (152)
T ss_dssp             ---------HHCTTCH-----HHHHHHHHHHHHHH
T ss_pred             ---------hcCCCCH-----HHHHHHHHHHHHHH
Confidence                     8999999     88888777776654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.70  E-value=0.00021  Score=60.70  Aligned_cols=63  Identities=14%  Similarity=0.124  Sum_probs=57.3

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+...|..++..|+|.+|+..|.+++...+..               ..++.|+|.||.++|+|++|+..++++++++
T Consensus        49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  111 (166)
T 1a17_A           49 YYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAALRDYETVVKVK  111 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            45678999999999999999999999987654               5688999999999999999999999999987

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.70  E-value=0.00035  Score=58.47  Aligned_cols=74  Identities=19%  Similarity=0.125  Sum_probs=59.8

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      ...+..+...|..++..|+|.+|+..|.+++.+.+....         ......++.|+|.+|..+|+|++|+..+++++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345667788999999999999999999999998753211         23346688999999999999999999999998


Q ss_pred             hhc
Q 036950          367 ELD  369 (469)
Q Consensus       367 ~~d  369 (469)
                      ++.
T Consensus        77 ~~~   79 (164)
T 3ro3_A           77 LLA   79 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.69  E-value=0.0003  Score=69.43  Aligned_cols=74  Identities=16%  Similarity=0.109  Sum_probs=60.0

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..+..+...|..++..|+|..|+..|.+|+.+.+.....        ......++.|+|.||..+|+|++|+.++++|++
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  212 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS  212 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            456677889999999999999999999999988765321        223467888999999999999999999999887


Q ss_pred             hc
Q 036950          368 LD  369 (469)
Q Consensus       368 ~d  369 (469)
                      +.
T Consensus       213 ~~  214 (383)
T 3ulq_A          213 MA  214 (383)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.68  E-value=0.00014  Score=72.89  Aligned_cols=81  Identities=26%  Similarity=0.287  Sum_probs=71.9

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|+.+++.|+|.+|+..|++++...+..               ..++.++|.||+++|+|++|+.++++++++
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   89 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIQL   89 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            46677889999999999999999999999976654               678899999999999999999999999998


Q ss_pred             c-----------------------HHHHHHHHhhCCCCC
Q 036950          369 D-----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       369 d-----------------------~~~~~~al~l~p~~~  384 (469)
                      +                       ...|+++++++|++.
T Consensus        90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            7                       667888999999864

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.68  E-value=0.0003  Score=66.85  Aligned_cols=102  Identities=17%  Similarity=0.139  Sum_probs=71.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh------
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL------  368 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~------  368 (469)
                      ..|..++..|++++|+..|++++...+..               ..++.++|.+|.++|+|++|+..+++++++      
T Consensus       164 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  228 (330)
T 3hym_B          164 YIGLEYGLTNNSKLAERFFSQALSIAPED---------------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN  228 (330)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc
Confidence            35555666666666666666666554432               567889999999999999999999999985      


Q ss_pred             ----c----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036950          369 ----D----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIF  417 (469)
Q Consensus       369 ----d----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf  417 (469)
                          .                      ...++++++++|++.     .+...+..+........+.. ..|.+.+
T Consensus       229 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~g~~~~A~-~~~~~al  297 (330)
T 3hym_B          229 EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA-----STYSAIGYIHSLMGNFENAV-DYFHTAL  297 (330)
T ss_dssp             SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS-----HHHHHHHHHHHHHTCHHHHH-HHHHTTT
T ss_pred             cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch-----HHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence                2                      677888999999998     88888877776665544433 2344444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.67  E-value=0.0002  Score=68.03  Aligned_cols=77  Identities=13%  Similarity=0.106  Sum_probs=66.0

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-  369 (469)
                      ..+...|..+++.|+|++|+..|.+++...+..               ..++.++|.+|.++|+|++|+..++++++++ 
T Consensus       173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  237 (327)
T 3cv0_A          173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---------------AQLWNKLGATLANGNRPQEALDAYNRALDINP  237 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            345578999999999999999999999987654               5678999999999999999999999999886 


Q ss_pred             ----------------------HHHHHHHHhhCCC
Q 036950          370 ----------------------KLDIKKALEIDPD  382 (469)
Q Consensus       370 ----------------------~~~~~~al~l~p~  382 (469)
                                            ...|++++.++|+
T Consensus       238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence                                  5667777888777

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.66  E-value=0.00014  Score=64.67  Aligned_cols=65  Identities=9%  Similarity=0.058  Sum_probs=59.5

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..+++.|+|.+|+..|.+++.+.+..               ..+++|+|.||+++++|++|+.+++++++++
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  152 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---------------VKALYKLGVANMYFGFLEEAKENLYKAASLN  152 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            4566789999999999999999999999987654               6789999999999999999999999999998

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.66  E-value=0.00025  Score=56.99  Aligned_cols=47  Identities=11%  Similarity=0.103  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          308 RASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       308 ~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .|+..|.+++...+.+               ..++.|+|.+|+.+|+|++|+..++++++++
T Consensus         3 ~a~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   49 (115)
T 2kat_A            3 AITERLEAMLAQGTDN---------------MLLRFTLGKTYAEHEQFDAALPHLRAALDFD   49 (115)
T ss_dssp             CHHHHHHHHHTTTCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            5889999999977755               5689999999999999999999999999877

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.65  E-value=0.00021  Score=59.49  Aligned_cols=65  Identities=18%  Similarity=0.203  Sum_probs=58.8

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ...+...|..+++.++|.+|+..|.+++...+..               ..++.|+|.||.++++|++|+..++++++++
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---------------VKALYRRSQALEKLGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            4556688999999999999999999999987654               5688999999999999999999999999987

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.65  E-value=0.00015  Score=59.09  Aligned_cols=63  Identities=22%  Similarity=0.213  Sum_probs=57.2

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+...|..++..|+|++|+..|.+++...+..               ..++.|+|.||.++++|++|+..++++++++
T Consensus        52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  114 (133)
T 2lni_A           52 LYSNRAACYTKLLEFQLALKDCEECIQLEPTF---------------IKGYTRKAAALEAMKDYTKAMDVYQKALDLD  114 (133)
T ss_dssp             HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            45678999999999999999999999987654               5688999999999999999999999999987

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.65  E-value=0.00031  Score=60.58  Aligned_cols=78  Identities=14%  Similarity=0.143  Sum_probs=60.0

Q ss_pred             hcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHH---HHHHHHHHHHhhcHHHHHHHHh
Q 036950          302 KAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYK---QAEKLCSKVLELDKLDIKKALE  378 (469)
Q Consensus       302 k~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~---~ai~~~~~al~~d~~~~~~al~  378 (469)
                      +.+.|++|+..|.+++.+.|.+               ...|+|++.|++.+++++   +|+...++|+    ..|++|++
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~---------------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi----~~le~AL~   74 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLD---------------ADNLTRWGGVLLELSQFHSISDAKQMIQEAI----TKFEEALL   74 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH----HHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHhcccchhhhhHhHHHHHH----HHHHHHHH
Confidence            4468999999999999998876               778999999999999875   3444444444    56777778


Q ss_pred             hCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          379 IDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       379 l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                      ++|++.     ++.-.+-.+...+.
T Consensus        75 ldP~~~-----~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           75 IDPKKD-----EAVWCIGNAYTSFA   94 (158)
T ss_dssp             HCTTCH-----HHHHHHHHHHHHHH
T ss_pred             hCcCcH-----HHHHHHHHHHHHhc
Confidence            889888     77777766665553

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.62  E-value=0.00031  Score=64.91  Aligned_cols=73  Identities=23%  Similarity=0.156  Sum_probs=58.6

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|+.++..|+|.+|+..|.+++.........+       ......++.|+|.||..+|+|++|+..+.+++++
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  114 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  114 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            355567899999999999999999999998763210000       1334778999999999999999999999999987

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.62  E-value=0.00034  Score=58.50  Aligned_cols=71  Identities=17%  Similarity=0.187  Sum_probs=59.5

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..++..|+|.+|+..|.+++.+.+....         ......++.|+|.+|..+++|++|+..+++++++.
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            445678999999999999999999999998764321         23346789999999999999999999999999653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.61  E-value=0.00021  Score=56.51  Aligned_cols=63  Identities=16%  Similarity=0.096  Sum_probs=57.0

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+...|..++..|+|.+|+..|.+++...+..               ..++.|+|.||.++|+|++|+..++++++++
T Consensus        40 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           40 LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---------------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            45678999999999999999999999987654               5688999999999999999999999999987

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.61  E-value=0.00028  Score=62.98  Aligned_cols=93  Identities=14%  Similarity=0.090  Sum_probs=73.6

Q ss_pred             hcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950          292 KKKEEGNVLFKA-GKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~-~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-  369 (469)
                      .+...|..++.. |+|.+|+..|.+++. .+..+.            ...++.|+|.||.++|+|++|+..++++++.+ 
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  144 (225)
T 2vq2_A           78 INNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPT------------PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP  144 (225)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSC------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            345789999999 999999999999998 322211            25678999999999999999999999999987 


Q ss_pred             ----------------------HHHHHHHHhhCC-CCCCcchHHHHHHHHHHHHHH
Q 036950          370 ----------------------KLDIKKALEIDP-DNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       370 ----------------------~~~~~~al~l~p-~~~~~~~~~~~~~l~~~~~~~  402 (469)
                                            ...++++++++| ++.     .+...+..+....
T Consensus       145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  195 (225)
T 2vq2_A          145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA-----DDLLLGWKIAKAL  195 (225)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCH-----HHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHhc
Confidence                                  567888999999 777     6665555554443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.60  E-value=0.00022  Score=70.86  Aligned_cols=64  Identities=20%  Similarity=0.111  Sum_probs=58.2

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+.+.|..+++.++|++|+..|++|+.+.+..               ..+|+|+|.||+++++|++|+.++++|++++
T Consensus       274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~  337 (370)
T 1ihg_A          274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---------------TKALYRRAQGWQGLKEYDQALADLKKAQEIA  337 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            345678999999999999999999999976654               6789999999999999999999999999998

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.59  E-value=0.00035  Score=68.91  Aligned_cols=74  Identities=18%  Similarity=0.121  Sum_probs=58.1

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      ...+..+...|..++..|+|..|+..|.+|+.+.+.....        ......+++|+|.||..+|+|++|+.++.+||
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  209 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL  209 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456677788999999999999999999999987654321        12346778888888888888888888888888


Q ss_pred             hh
Q 036950          367 EL  368 (469)
Q Consensus       367 ~~  368 (469)
                      ++
T Consensus       210 ~~  211 (378)
T 3q15_A          210 EL  211 (378)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.59  E-value=0.00014  Score=57.18  Aligned_cols=61  Identities=18%  Similarity=0.140  Sum_probs=53.7

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHhHhHHHHHHHHh-hCHHHHHHHHHHHHh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGY--DSSFSDEEKQQAKVLKITCNLNNAACKLKL-KEYKQAEKLCSKVLE  367 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~--~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl-~~~~~ai~~~~~al~  367 (469)
                      .+...|..++..|+|++|+..|++++...+.  .               ..++.|+|.||.++ +++++|+.++++++.
T Consensus        42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           42 YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN---------------KDVWAAKADALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC---------------HHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch---------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            3457899999999999999999999998765  3               56889999999999 999999998888774

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.58  E-value=0.00049  Score=63.66  Aligned_cols=78  Identities=17%  Similarity=0.080  Sum_probs=68.0

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc--
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--  369 (469)
                      .+...|..++..|+|++|+..|.+++...+..               ..++.|+|.||+++|+|++|+..++++++++  
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  143 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  143 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCccc---------------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            45678999999999999999999999987654               5678999999999999999999999999987  


Q ss_pred             --------------------HHHHHHHHhhCCCCC
Q 036950          370 --------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 --------------------~~~~~~al~l~p~~~  384 (469)
                                          ...+++++...|++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (275)
T 1xnf_A          144 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ  178 (275)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             ChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcch
Confidence                                455677788888776

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.57  E-value=0.00033  Score=66.61  Aligned_cols=125  Identities=12%  Similarity=-0.032  Sum_probs=82.4

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh-
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL-  368 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~-  368 (469)
                      +.-+...|..++..++|++|+..|.+|+.+........         ....+++|+|.||..+|+|++|+.++++||+. 
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~---------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  185 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY---------QNLYIENAIANIYAENGYLKKGIDLFEQILKQL  185 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44455688888889999999999999999654332221         23568999999999999999999999999952 


Q ss_pred             -----c------------------------HHHHHHHHhhCCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036950          369 -----D------------------------KLDIKKALEIDPDNSL-EAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFA  418 (469)
Q Consensus       369 -----d------------------------~~~~~~al~l~p~~~~-~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~  418 (469)
                           +                        +..+++|+++.++... .....+...+..+..++.+..++....|.+.+.
T Consensus       186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence                 1                        5667777777554420 001144555555555554322334444555555


Q ss_pred             hhhhc
Q 036950          419 KINKL  423 (469)
Q Consensus       419 ~~~~~  423 (469)
                      -....
T Consensus       266 i~~~~  270 (293)
T 3u3w_A          266 FFDIL  270 (293)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            44433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.57  E-value=0.00026  Score=57.69  Aligned_cols=66  Identities=9%  Similarity=0.037  Sum_probs=57.7

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+...|..+++.|+|.+|+..|.+++...+..+.            ...++.++|.||.++|++++|+..++++++.+
T Consensus        41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK------------AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4567899999999999999999999998765421            24578999999999999999999999999887

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.56  E-value=0.00068  Score=67.01  Aligned_cols=71  Identities=17%  Similarity=0.093  Sum_probs=59.5

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      ...+..+...|..++..|+|.+|+..|++++...+.+           ......++.++|.||..+|+|++|+.++++++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED-----------LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC-----------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4557777899999999999999999999999986543           22345678899999999999999999999998


Q ss_pred             hh
Q 036950          367 EL  368 (469)
Q Consensus       367 ~~  368 (469)
                      ++
T Consensus       114 ~~  115 (411)
T 4a1s_A          114 TL  115 (411)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.55  E-value=0.0011  Score=62.82  Aligned_cols=73  Identities=12%  Similarity=0.148  Sum_probs=59.8

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|+.++..|+|++|+..|.+|+.+....+..        ..+...+++|+|.||.++|+|++|+.+++++|++
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            35566789999999999999999999999776543221        1223478999999999999999999999999976


Q ss_pred             c
Q 036950          369 D  369 (469)
Q Consensus       369 d  369 (469)
                      .
T Consensus       226 ~  226 (293)
T 2qfc_A          226 S  226 (293)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.54  E-value=0.00061  Score=62.00  Aligned_cols=66  Identities=8%  Similarity=-0.047  Sum_probs=52.3

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHH------------------hh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLK------------------LK  353 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~k------------------l~  353 (469)
                      .+...|..+++.|+|.+|+..|+++++..|..+..            ..++.+++.||.+                  ++
T Consensus        43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  110 (225)
T 2yhc_A           43 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQ  110 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH------------HHHHHHHHHHHHHHHC--------------CCH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcH
Confidence            45678999999999999999999999988865321            2356777777776                  56


Q ss_pred             CHHHHHHHHHHHHhhc
Q 036950          354 EYKQAEKLCSKVLELD  369 (469)
Q Consensus       354 ~~~~ai~~~~~al~~d  369 (469)
                      ++++|+..++++++.+
T Consensus       111 ~~~~A~~~~~~~l~~~  126 (225)
T 2yhc_A          111 QARAAFSDFSKLVRGY  126 (225)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHC
Confidence            8888888888888654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.51  E-value=0.0005  Score=70.45  Aligned_cols=126  Identities=13%  Similarity=0.023  Sum_probs=86.6

Q ss_pred             HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC------------CCCCHHHHHHHHH------HHHHhHhHHHH
Q 036950          286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD------------SSFSDEEKQQAKV------LKITCNLNNAA  347 (469)
Q Consensus       286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~------------~~~~~e~~~~~~~------l~~~~~~N~a~  347 (469)
                      ....+..+...|..++..|+|.+|+..|.+++...+..            ....++-...+..      ....++.++|.
T Consensus       239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  318 (537)
T 3fp2_A          239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQ  318 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence            34456667788888888888888888888888765431            0011111111111      12567899999


Q ss_pred             HHHHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          348 CKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       348 ~~~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                      ||.++|+|++|+..++++++++                       ...|+++++++|++.     .+...+..+......
T Consensus       319 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~  393 (537)
T 3fp2_A          319 MYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP-----EVPTFFAEILTDRGD  393 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----HHHHHHHHHHHHTTC
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHhCC
Confidence            9999999999999999999987                       677899999999998     887777777655544


Q ss_pred             HHHHHHHHHHHhh
Q 036950          405 YNKKDVQFYGNIF  417 (469)
Q Consensus       405 ~~~~e~~~~~~mf  417 (469)
                      ..+.. ..|.+++
T Consensus       394 ~~~A~-~~~~~a~  405 (537)
T 3fp2_A          394 FDTAI-KQYDIAK  405 (537)
T ss_dssp             HHHHH-HHHHHHH
T ss_pred             HHHHH-HHHHHHH
Confidence            43332 2344443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.50  E-value=0.0013  Score=62.05  Aligned_cols=68  Identities=21%  Similarity=0.130  Sum_probs=55.0

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      +..+...|..++..|+|.+|+..|++++...+.+           ......++.++|.+|..+|+|++|+..+++++++
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   72 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED-----------LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   72 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4456678999999999999999999999975543           2234567888888888888888888888888876

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.50  E-value=0.00041  Score=55.89  Aligned_cols=63  Identities=21%  Similarity=0.090  Sum_probs=56.9

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+...|..++..|+|.+|+..|.+++...+..               ..++.++|.+|.++++|++|+..++++++++
T Consensus        48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  110 (131)
T 2vyi_A           48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---------------SKAYGRMGLALSSLNKHVEAVAYYKKALELD  110 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            45678999999999999999999999986654               5678999999999999999999999999987

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.48  E-value=0.00037  Score=66.10  Aligned_cols=80  Identities=14%  Similarity=0.041  Sum_probs=69.3

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..++..|+|.+|+..|++++...+..               ..++.++|.||.++|+|++|+..++++++++
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   85 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPER---------------EEAWRSLGLTQAENEKDGLAIIALNHARMLD   85 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            4456788999999999999999999999976654               5678899999999999999999999999887


Q ss_pred             -----------------------HHHHHHHHhhCCCCC
Q 036950          370 -----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~  384 (469)
                                             ...++++++++|++.
T Consensus        86 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  123 (327)
T 3cv0_A           86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  123 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH
Confidence                                   567888889999887

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.45  E-value=0.0012  Score=65.10  Aligned_cols=72  Identities=13%  Similarity=-0.031  Sum_probs=60.6

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..+..+...|..++..|+|++|+..|.+|+.+.+....         ......++.|+|.||..+|+|++|+.++++|++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34566678999999999999999999999998753311         234577899999999999999999999999998


Q ss_pred             h
Q 036950          368 L  368 (469)
Q Consensus       368 ~  368 (469)
                      +
T Consensus       251 ~  251 (378)
T 3q15_A          251 V  251 (378)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.44  E-value=0.00052  Score=71.79  Aligned_cols=78  Identities=12%  Similarity=0.014  Sum_probs=67.5

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc--
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--  369 (469)
                      .+...|..+++.|+|++|+..|++++...+.+               ..++.|+|.||.++|+|++|+..++++++++  
T Consensus        59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  123 (568)
T 2vsy_A           59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEH---------------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE  123 (568)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            45678999999999999999999999987654               6688999999999999999999999999987  


Q ss_pred             ------------------------HHHHHHHHhhCCCCC
Q 036950          370 ------------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 ------------------------~~~~~~al~l~p~~~  384 (469)
                                              .+.++++++.+|++.
T Consensus       124 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  162 (568)
T 2vsy_A          124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV  162 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred             CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence                                    345677777777765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.43  E-value=0.0012  Score=64.62  Aligned_cols=68  Identities=21%  Similarity=0.130  Sum_probs=54.9

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      +..+...|..+++.|+|.+|+..|++++...+.+           ......++.++|.||..+|+|++|+.++++++++
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   76 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED-----------LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   76 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccc-----------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4456688999999999999999999999985543           2234567888888888888888888888888876

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.43  E-value=0.0016  Score=57.29  Aligned_cols=71  Identities=11%  Similarity=0.087  Sum_probs=59.7

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|..++..|+|.+|+..|.+++.+......         ......++.|+|.+|..+|+|++|+.++.+++++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3556678999999999999999999999998764321         2344678999999999999999999999999987

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.42  E-value=0.00024  Score=71.80  Aligned_cols=93  Identities=15%  Similarity=0.133  Sum_probs=72.5

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh--CHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK--EYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~--~~~~ai~~~~~al~~d  369 (469)
                      .+.+.|..++..|+|.+|+..|.+++.+.+.......       .....+++|++.++++++  +|++|+.++++||+++
T Consensus        96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~  168 (472)
T 4g1t_A           96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR-------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK  168 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC-------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc-------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence            3457899999999999999999999998764322110       001457889998888875  6999999999999987


Q ss_pred             --------------------------HHHHHHHHhhCCCCCCcchHHHHHHHH
Q 036950          370 --------------------------KLDIKKALEIDPDNSLEAGWGVRMEYK  396 (469)
Q Consensus       370 --------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~  396 (469)
                                                ++.+++|++++|++.     .+...+.
T Consensus       169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~-----~~~~~l~  216 (472)
T 4g1t_A          169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ-----YLKVLLA  216 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH-----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch-----HHHHHHH
Confidence                                      567899999999998     6655544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.40  E-value=0.00067  Score=54.64  Aligned_cols=70  Identities=17%  Similarity=0.171  Sum_probs=58.9

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+...|..++..|+|.+|+..|.+++...+.....        ......++.|+|.+|.++|+|++|+.+++++++++
T Consensus        40 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  109 (131)
T 1elr_A           40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (131)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh--------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            34678999999999999999999999987643211        22336688999999999999999999999999987

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.39  E-value=0.0018  Score=65.60  Aligned_cols=76  Identities=8%  Similarity=-0.043  Sum_probs=60.0

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      ...+..+.+.-..+.++|+|++|+..|++++......-..+       .......+.|+|.+|..+|+|++|+..|.++|
T Consensus       284 ~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L  356 (429)
T 3qwp_A          284 WKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTM  356 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34455666667788899999999999999998654321111       23457889999999999999999999999999


Q ss_pred             hhc
Q 036950          367 ELD  369 (469)
Q Consensus       367 ~~d  369 (469)
                      ++.
T Consensus       357 ~i~  359 (429)
T 3qwp_A          357 EPY  359 (429)
T ss_dssp             HHH
T ss_pred             HhH
Confidence            875

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00047  Score=70.06  Aligned_cols=92  Identities=13%  Similarity=0.165  Sum_probs=68.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHH---hhCHHHHHHHHHHHHhhc-
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLK---LKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~k---l~~~~~ai~~~~~al~~d-  369 (469)
                      ...|..+++.|+|.+|+..|.+++...+..+...         ....++.++|.||++   +|+|++|+..++++++++ 
T Consensus       376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~  446 (514)
T 2gw1_A          376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIY---------VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP  446 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS---------SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH---------HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence            3566777777777777777777776655442210         002378999999999   999999999999999887 


Q ss_pred             ----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950          370 ----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK  399 (469)
Q Consensus       370 ----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  399 (469)
                                            ...|+++++++|++.     .+...+..++
T Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~  493 (514)
T 2gw1_A          447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME-----EKLQAITFAE  493 (514)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH-----HHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH-----HHHHHHHHHH
Confidence                                  677999999999988     7766664443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.39  E-value=0.00064  Score=65.17  Aligned_cols=68  Identities=13%  Similarity=0.056  Sum_probs=44.4

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+...|+.+...|+|.+|+..|.+++.+.+....         ......+|.|++.||.++|+|++|+.++++||++
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  105 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS---------LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM  105 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            3344577777788888888888888877643211         1123456667777777777777777777777665

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.38  E-value=0.00023  Score=73.15  Aligned_cols=65  Identities=15%  Similarity=0.109  Sum_probs=58.7

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..+++.|+|++|+..|++|+.+.+..               ..++.|+|.+|.++|+|++|+.++++|++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3445689999999999999999999999986654               6689999999999999999999999999987

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.37  E-value=0.0011  Score=63.15  Aligned_cols=103  Identities=10%  Similarity=0.079  Sum_probs=67.8

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHH----hhCHHHHHHHHHHHHhh
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLK----LKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~k----l~~~~~ai~~~~~al~~  368 (469)
                      +...|..+.+.|++++|+..|++++...+..                 ...|++.++..    .|+|++|+..++++++.
T Consensus       133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----------------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~  195 (291)
T 3mkr_A          133 MAMTVQILLKLDRLDLARKELKKMQDQDEDA-----------------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK  195 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----------------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence            3456778888888888888888888765432                 12344433333    37888888888888887


Q ss_pred             c-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036950          369 D-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIF  417 (469)
Q Consensus       369 d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf  417 (469)
                      +                       ...|+++++++|+|.     ++...+..+.....+..+.-...+.++.
T Consensus       196 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~-----~~l~~l~~~~~~~g~~~eaa~~~~~~~~  262 (291)
T 3mkr_A          196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP-----ETLINLVVLSQHLGKPPEVTNRYLSQLK  262 (291)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            6                       677888888999888     7776666655554443332233344433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.36  E-value=0.00079  Score=53.62  Aligned_cols=63  Identities=27%  Similarity=0.366  Sum_probs=56.0

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+...|..++..|+|++|+..|.+++...+..               ..++.++|.+|.++++|++|+..++++++++
T Consensus        45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  107 (125)
T 1na0_A           45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD  107 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            34578999999999999999999999976543               4578899999999999999999999999987

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.34  E-value=0.00066  Score=67.11  Aligned_cols=70  Identities=14%  Similarity=0.200  Sum_probs=57.3

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|..++..|+|++|+..|.+++.+.+....         ......++.|+|.+|+.+|+|++|+..+++++++.
T Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  293 (411)
T 4a1s_A          224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD---------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA  293 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            45567899999999999999999999998764211         22345688999999999999999999999998865

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.32  E-value=0.0017  Score=67.53  Aligned_cols=106  Identities=9%  Similarity=-0.027  Sum_probs=78.7

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc--
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--  369 (469)
                      .+...|+.+++.|++++|+..|.+++...+.+               ...|++++.+|.+.|++++|+..++++++.+  
T Consensus       375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  439 (597)
T 2xpi_A          375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQF---------------GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG  439 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            34457888888899999999999888865543               5578899999999999999999999999876  


Q ss_pred             ---------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036950          370 ---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFA  418 (469)
Q Consensus       370 ---------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~  418 (469)
                                           .+.|+++++++|++.     .+...+..+..+.....+. .+.|.+|..
T Consensus       440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  503 (597)
T 2xpi_A          440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP-----LLLNELGVVAFNKSDMQTA-INHFQNALL  503 (597)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHTTCHHHH-HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHhCCHHHH-HHHHHHHHH
Confidence                                 667888899999988     6666666655444433332 233444443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.27  E-value=0.0018  Score=65.54  Aligned_cols=76  Identities=13%  Similarity=-0.000  Sum_probs=59.2

Q ss_pred             HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950          286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV  365 (469)
Q Consensus       286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a  365 (469)
                      .+..+....+.+...-+.|+|++|+..|++++......-..+       ....+..++|+|.+|..+|+|++|+..+.++
T Consensus       294 ~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  366 (433)
T 3qww_A          294 MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKI  366 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            344555666677777778999999999999999775431111       2335778999999999999999999999999


Q ss_pred             Hhh
Q 036950          366 LEL  368 (469)
Q Consensus       366 l~~  368 (469)
                      |++
T Consensus       367 L~i  369 (433)
T 3qww_A          367 IKP  369 (433)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            964

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.26  E-value=0.0038  Score=61.35  Aligned_cols=72  Identities=14%  Similarity=0.154  Sum_probs=61.0

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..+..+...|..++..|+|++|+..|.+|+.+.+....         ......++.|+|.||..+|+|++|+.++++|++
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34556778999999999999999999999998764421         334577899999999999999999999999998


Q ss_pred             h
Q 036950          368 L  368 (469)
Q Consensus       368 ~  368 (469)
                      +
T Consensus       253 ~  253 (383)
T 3ulq_A          253 V  253 (383)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.23  E-value=0.0021  Score=62.92  Aligned_cols=71  Identities=20%  Similarity=0.137  Sum_probs=57.3

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..++..|+|.+|+..|.+++.+.+....         ......++.|+|.+|..+|+|++|+.++++++++.
T Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  257 (406)
T 3sf4_A          187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA  257 (406)
T ss_dssp             HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            445667899999999999999999999998765322         22346678899999999999999999999988764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.23  E-value=0.0023  Score=66.51  Aligned_cols=122  Identities=9%  Similarity=-0.029  Sum_probs=77.0

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC-------------CHHHHHHHHHH------HHHhHhHHHHHHHHh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSF-------------SDEEKQQAKVL------KITCNLNNAACKLKL  352 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~-------------~~e~~~~~~~l------~~~~~~N~a~~~~kl  352 (469)
                      .+...|..+.+.|++++|+..|++++...+.+...             .++-...++.+      ...+|++++.+|.+.
T Consensus       409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (597)
T 2xpi_A          409 AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK  488 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            45677888888888888888888888765543110             00111111111      134677888888888


Q ss_pred             hCHHHHHHHHHHHHhh------c------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          353 KEYKQAEKLCSKVLEL------D------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       353 ~~~~~ai~~~~~al~~------d------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                      |++++|+..+++++++      +                        ...|+++++++|++.     .+...+..+....
T Consensus       489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~  563 (597)
T 2xpi_A          489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA-----NVHTAIALVYLHK  563 (597)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH-----HHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHh
Confidence            8888888888888776      2                        566777788888877     7777776666555


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 036950          403 REYNKKDVQFYGNIFAK  419 (469)
Q Consensus       403 ~~~~~~e~~~~~~mf~~  419 (469)
                      .+..+.. ..|.+++..
T Consensus       564 g~~~~A~-~~~~~~l~~  579 (597)
T 2xpi_A          564 KIPGLAI-THLHESLAI  579 (597)
T ss_dssp             TCHHHHH-HHHHHHHHH
T ss_pred             CCHHHHH-HHHHHHHhc
Confidence            4443332 335555443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.22  E-value=0.0022  Score=66.04  Aligned_cols=113  Identities=10%  Similarity=0.040  Sum_probs=77.4

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..+..+.+.|..+...|+|++|+..|+++|......-..+       .+.....++|+|..|..+|+|++|+..+.+||+
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~  421 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA  421 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3555667899999999999999999999998764321111       234477899999999999999999999999995


Q ss_pred             hcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036950          368 LDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNI  416 (469)
Q Consensus       368 ~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~m  416 (469)
                      +    +++  .+.|++.  ...++...|..++..++.++..|. +|+++
T Consensus       422 i----~~~--~lG~~Hp--~~~~~~~~l~~~~~e~~~~~~ae~-~~~~~  461 (490)
T 3n71_A          422 I----LLV--THGPSHP--ITKDLEAMRMQTEMELRMFRQNEF-MYHKM  461 (490)
T ss_dssp             H----HHH--HTCTTSH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             H----HHH--HhCCCCh--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            3    222  3456655  011344455555555555554442 34444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.19  E-value=0.0024  Score=60.48  Aligned_cols=67  Identities=12%  Similarity=-0.002  Sum_probs=52.0

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      ....|..+...|+|++|+..|.+|+..........         ....+++|+|.+|..+|+|++|+.++++|+++
T Consensus       118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~  184 (293)
T 2qfc_A          118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY---------QNLYIENAIANIYAENGYLKKGIDLFEQILKQ  184 (293)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34567777788888888888888887654332211         13568999999999999999999999999954

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.17  E-value=0.0017  Score=60.95  Aligned_cols=72  Identities=24%  Similarity=0.152  Sum_probs=56.9

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      +..+...|+.++..|+|.+|+..|.+++.........       -......++.|+|.+|..+|+|++|+..+++++++
T Consensus        69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  140 (311)
T 3nf1_A           69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK-------DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  140 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            4456679999999999999999999999876321000       01334678899999999999999999999999986

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.16  E-value=0.0019  Score=60.93  Aligned_cols=71  Identities=20%  Similarity=0.137  Sum_probs=58.9

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..++..|+|++|+..|.+++...+....         ......++.|+|.+|..+|+|++|+..+++++++.
T Consensus       183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  253 (338)
T 3ro2_A          183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA  253 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            445667899999999999999999999998753211         23346689999999999999999999999999765

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.15  E-value=0.00085  Score=67.98  Aligned_cols=83  Identities=12%  Similarity=0.017  Sum_probs=64.3

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+.+.|..+...|+|++|+..|+++|......-..+       .......|+|+|..|..+|+|++|+..+.+||++
T Consensus       339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            455566899999999999999999999998775321111       2334778999999999999999999999999964


Q ss_pred             cHHHHHHHHhhCCCCC
Q 036950          369 DKLDIKKALEIDPDNS  384 (469)
Q Consensus       369 d~~~~~~al~l~p~~~  384 (469)
                      -    ++  .+.|++.
T Consensus       412 ~----~~--~lG~~Hp  421 (433)
T 3qww_A          412 M----EV--AHGKDHP  421 (433)
T ss_dssp             H----HH--HTCTTCH
T ss_pred             H----HH--HcCCCCh
Confidence            2    11  3466666

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.15  E-value=0.0024  Score=58.75  Aligned_cols=73  Identities=16%  Similarity=0.008  Sum_probs=58.7

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|+.++..|+|.+|+..|.+++.........+       ......++.|+|.||..+|+|++|+..+++++++
T Consensus        84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455667899999999999999999999999763210000       1234778999999999999999999999999987

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.13  E-value=0.0019  Score=61.70  Aligned_cols=89  Identities=12%  Similarity=0.017  Sum_probs=71.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      ...|+.+.+.|++++|...|++++...+...              ..+|.|++.++.++|++++|+..+++|++++    
T Consensus       103 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~  168 (308)
T 2ond_A          103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH  168 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--------------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhccccCc--------------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Confidence            4678888899999999999999999655431              1278999999999999999999999999864    


Q ss_pred             --------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 036950          370 --------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEK  401 (469)
Q Consensus       370 --------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~  401 (469)
                                          ...|+++++++|++.     .+...+..+...
T Consensus       169 ~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~  215 (308)
T 2ond_A          169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-----EYVLAYIDYLSH  215 (308)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHH
Confidence                                567888999999987     666665555433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.07  E-value=0.0024  Score=59.87  Aligned_cols=73  Identities=25%  Similarity=0.262  Sum_probs=58.7

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+...|..++..|+|.+|+..|.+++.........+       ......++.++|.||.++|+|++|+..+++++++.
T Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD-------DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT-------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44556789999999999999999999999754321111       12346789999999999999999999999999763

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.02  E-value=0.0065  Score=53.14  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=59.9

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|..++..|+|.+|+..|.+++.+.......        ......++.|+|.+|..+|+|++|+..+++++++
T Consensus        65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (203)
T 3gw4_A           65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--------PLAASANAYEVATVALHFGDLAGARQEYEKSLVY  136 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45556789999999999999999999999987533211        1234678999999999999999999999999965


Q ss_pred             c
Q 036950          369 D  369 (469)
Q Consensus       369 d  369 (469)
                      .
T Consensus       137 ~  137 (203)
T 3gw4_A          137 A  137 (203)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.02  E-value=0.008  Score=57.30  Aligned_cols=68  Identities=18%  Similarity=0.327  Sum_probs=58.8

Q ss_pred             hcCCH-------HHHHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          302 KAGKY-------ERASKRYEQAVN-YIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       302 k~~~~-------~~A~~~Y~~al~-~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      +.|++       ++|+..|.+|+. +.+..               ..+|.|++..+.++|++++|+..++++|+++    
T Consensus        69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  133 (308)
T 2ond_A           69 EKGDMNNAKLFSDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP  133 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHHHHTTTTTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT
T ss_pred             hccchhhcccchHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc
Confidence            46876       999999999999 45544               6689999999999999999999999999876    


Q ss_pred             --------------------HHHHHHHHhhCCCCC
Q 036950          370 --------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 --------------------~~~~~~al~l~p~~~  384 (469)
                                          +..|++|++++|.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~  168 (308)
T 2ond_A          134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH  168 (308)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred             cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Confidence                                567888999999877

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.88  E-value=0.0025  Score=60.49  Aligned_cols=99  Identities=12%  Similarity=-0.052  Sum_probs=61.9

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC-------------CCHHHHHHHH------HHHHHhHhHHHHHHHHh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSS-------------FSDEEKQQAK------VLKITCNLNNAACKLKL  352 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~-------------~~~e~~~~~~------~l~~~~~~N~a~~~~kl  352 (469)
                      .+...|..+.+.|++++|+..|.+++...+....             ..++....++      +-...+++|+|.+|+.+
T Consensus       153 a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~  232 (287)
T 3qou_A          153 IGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV  232 (287)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence            3457899999999999999999998776542100             0000011111      11234667777777777


Q ss_pred             hCHHHHHHHHHHHHhhcHHHHHHHHhhCCCC--CCcchHHHHHHHHHHHHHHHHHH
Q 036950          353 KEYKQAEKLCSKVLELDKLDIKKALEIDPDN--SLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       353 ~~~~~ai~~~~~al~~d~~~~~~al~l~p~~--~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                      |++++|+..+.++           ++++|++  .     .++..+..+...+....
T Consensus       233 g~~~~A~~~l~~~-----------l~~~p~~~~~-----~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          233 GRNEEALELLFGH-----------LRXDLTAADG-----QTRXTFQEILAALGTGD  272 (287)
T ss_dssp             TCHHHHHHHHHHH-----------HHHCTTGGGG-----HHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHH-----------Hhcccccccc-----hHHHHHHHHHHHcCCCC
Confidence            7777776655554           5788887  5     67777777766654433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.84  E-value=0.0021  Score=64.98  Aligned_cols=84  Identities=11%  Similarity=-0.041  Sum_probs=64.7

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..+..+.+.|..+...|+|++|+..|.++|......-...       .+.....++|+|..|..+|+|++|+..+.+||+
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3455667889999999999999999999998764321111       234578899999999999999999999999995


Q ss_pred             hcHHHHHHHHhhCCCCC
Q 036950          368 LDKLDIKKALEIDPDNS  384 (469)
Q Consensus       368 ~d~~~~~~al~l~p~~~  384 (469)
                      +    +++  .+.|++.
T Consensus       400 i----~~~--~lG~~Hp  410 (429)
T 3qwp_A          400 I----MRV--THGREHS  410 (429)
T ss_dssp             H----HHH--HTCTTSH
T ss_pred             H----HHH--hcCCCCh
Confidence            3    222  3566666

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.72  E-value=0.01  Score=55.05  Aligned_cols=31  Identities=13%  Similarity=-0.038  Sum_probs=18.7

Q ss_pred             HHhHhHHHHHHHH----hhCHHHHHHHHHHHHhhc
Q 036950          339 ITCNLNNAACKLK----LKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       339 ~~~~~N~a~~~~k----l~~~~~ai~~~~~al~~d  369 (469)
                      ..++.|++.+|..    .+++++|+..++++++.+
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  108 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK  108 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence            3455566666666    666666666666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.70  E-value=0.01  Score=62.23  Aligned_cols=90  Identities=12%  Similarity=0.017  Sum_probs=75.6

Q ss_pred             cHHHHHHHHhcCC----------HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh--CHHHHHH
Q 036950          293 KKEEGNVLFKAGK----------YERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK--EYKQAEK  360 (469)
Q Consensus       293 ~k~~Gn~~fk~~~----------~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~--~~~~ai~  360 (469)
                      +..+|..+.+.++          |++|+..|.+++...+..               ..+|.+|+.++.+++  +|++++.
T Consensus        66 W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---------------y~aW~hR~w~l~~l~~~~~~~el~  130 (567)
T 1dce_A           66 WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---------------YGTWHHRCWLLSRLPEPNWARELE  130 (567)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcccccHHHHHH
Confidence            3456777777777          999999999999987765               779999999999999  7899999


Q ss_pred             HHHHHHhhc------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          361 LCSKVLELD------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       361 ~~~~al~~d------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                      +|+++|++|                        ++.+.++++.+|+|.     .+...+..+-..+
T Consensus       131 ~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~-----saW~~r~~ll~~l  191 (567)
T 1dce_A          131 LCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-----SSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH-----HHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc-----cHHHHHHHHHHhh
Confidence            999999999                        456788899999999     7777777765554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.66  E-value=0.0075  Score=46.93  Aligned_cols=61  Identities=16%  Similarity=0.082  Sum_probs=51.6

Q ss_pred             hhcHHHHHHHHhcCC---HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          291 GKKKEEGNVLFKAGK---YERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~---~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      ..+-..|..++-.++   ..+|...+.+|+.+.+.+               ...+..+|..+++.|+|++|+..++++|
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~---------------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN---------------EAALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345577888875555   799999999999998876               7788889999999999999999888776

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.65  E-value=0.0039  Score=51.35  Aligned_cols=51  Identities=22%  Similarity=0.356  Sum_probs=43.3

Q ss_pred             HHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          338 KITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       338 ~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                      ..-|++.+|.+|+|+|+|..|+.+|+.+|           +++|+|.     ++......+++++.+
T Consensus        73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL-----------~~eP~n~-----QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           73 QRDYVFYLAVGNYRLKEYEKALKYVRGLL-----------QTEPQNN-----QAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHCTTCH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------HhCCCCH-----HHHHHHHHHHHHHHh
Confidence            45678999999999999999999988776           8999999     888888887776543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.60  E-value=0.01  Score=49.13  Aligned_cols=51  Identities=20%  Similarity=0.324  Sum_probs=43.1

Q ss_pred             HHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          338 KITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       338 ~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                      ..-|++-+|.+|.|+|+|..|..+|+.+|           +++|+|.     ++......+++++.+
T Consensus        77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL-----------~~eP~N~-----QA~~Lk~~Ie~ki~k  127 (134)
T 3o48_A           77 RRECLYYLTIGCYKLGEYSMAKRYVDTLF-----------EHERNNK-----QVGALKSMVEDKIQK  127 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------TTCTTCH-----HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------hhCCCCH-----HHHHHHHHHHHHHHh
Confidence            35678899999999999999999998776           8999999     888777777776654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.53  E-value=0.014  Score=48.90  Aligned_cols=49  Identities=20%  Similarity=0.310  Sum_probs=41.7

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                      .-|++.+|.+|+|+++|..|..+|+..|           +++|+|.     ++......+++++.
T Consensus        77 RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL-----------~~eP~n~-----QA~~Lk~~Ie~~i~  125 (144)
T 1y8m_A           77 RECLYYLTIGCYKLGEYSMAKRYVDTLF-----------EHERNNK-----QVGALKSMVEDKIQ  125 (144)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------HTCCCCH-----HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------hcCCCcH-----HHHHHHHHHHHHHH
Confidence            4578899999999999999999998876           8999999     88877777766653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.53  E-value=0.012  Score=61.67  Aligned_cols=100  Identities=13%  Similarity=-0.017  Sum_probs=79.3

Q ss_pred             HHHHHHhhhcHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhC--------
Q 036950          284 QEKIEAAGKKKEEGNVLFKAGKY-ERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE--------  354 (469)
Q Consensus       284 ~e~~~~a~~~k~~Gn~~fk~~~~-~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~--------  354 (469)
                      ..|++.-..+......+.+.+.| ++|+..|.++|...+..               ..+|++|+.|+.++++        
T Consensus        22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~---------------~taW~~R~~~l~~l~~~~~~~~~~   86 (567)
T 1dce_A           22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDF---------------ATLWNCRREVLQHLETEKSPEESA   86 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHhcccccchhhhh
Confidence            34444444444555556666665 57799999999988876               8899999999999999        


Q ss_pred             --HHHHHHHHHHHHhhc-------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          355 --YKQAEKLCSKVLELD-------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       355 --~~~ai~~~~~al~~d-------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                        |++++..++++|+.+                         ++.+.+++++||.|.     .+.....-+-..+.
T Consensus        87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~-----~aW~~R~~~l~~l~  157 (567)
T 1dce_A           87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF-----HCWDYRRFVAAQAA  157 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc-----cHHHHHHHHHHHcC
Confidence              999999999999998                         678999999999999     77776666655543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.52  E-value=0.0043  Score=48.50  Aligned_cols=31  Identities=23%  Similarity=0.131  Sum_probs=27.4

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..++.|+|.||+++|+|++|+..++++++++
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   37 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETD   37 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            5678999999999999999999888888655

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.49  E-value=0.0091  Score=51.66  Aligned_cols=99  Identities=12%  Similarity=0.089  Sum_probs=64.6

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCC--------------HHHHHHHHH------HHHHhHhHHHHHHH
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFS--------------DEEKQQAKV------LKITCNLNNAACKL  350 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~--------------~e~~~~~~~------l~~~~~~N~a~~~~  350 (469)
                      ..+...|..+++.|++++|+..|++++...+ ++...              .+....++.      -...++.|+|.++.
T Consensus        41 ~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~  119 (176)
T 2r5s_A           41 DVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYN  119 (176)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999887654 21100              000111111      12457888899999


Q ss_pred             HhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCC-CcchHHHHHHHHHHHHHHHHH
Q 036950          351 KLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNS-LEAGWGVRMEYKLLKEKVREY  405 (469)
Q Consensus       351 kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~-~~~~~~~~~~l~~~~~~~~~~  405 (469)
                      ++|+|++|+..++++|           +++|+.. .    .+...+..+...+...
T Consensus       120 ~~g~~~~A~~~~~~~l-----------~~~p~~~~~----~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A          120 QVGRDEEALELLWNIL-----------KVNLGAQDG----EVKKTFMDILSALGQG  160 (176)
T ss_dssp             HTTCHHHHHHHHHHHH-----------TTCTTTTTT----HHHHHHHHHHHHHCSS
T ss_pred             HcccHHHHHHHHHHHH-----------HhCcccChH----HHHHHHHHHHHHhCCC
Confidence            9999999987776665           6777753 0    4666666665554433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.48  E-value=0.0087  Score=55.52  Aligned_cols=30  Identities=27%  Similarity=0.238  Sum_probs=17.4

Q ss_pred             HhHhHHHHHHHH----hhCHHHHHHHHHHHHhhc
Q 036950          340 TCNLNNAACKLK----LKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       340 ~~~~N~a~~~~k----l~~~~~ai~~~~~al~~d  369 (469)
                      .++.|++.+|.+    .+++++|+..++++++.+
T Consensus       183 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  216 (273)
T 1ouv_A          183 PGCFNAGNMYHHGEGATKNFKEALARYSKACELE  216 (273)
T ss_dssp             HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence            345556666666    566666666666655554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.37  E-value=0.011  Score=50.99  Aligned_cols=75  Identities=20%  Similarity=0.147  Sum_probs=50.1

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHH--------HHH-HH-HHHHHHhHhHHHHHHHHhhCHHHHH
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDE--------EKQ-QA-KVLKITCNLNNAACKLKLKEYKQAE  359 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e--------~~~-~~-~~l~~~~~~N~a~~~~kl~~~~~ai  359 (469)
                      ++.+--.|+.+|..++|.+|...|++||..........-.        ... .. ..--..+.+-+|.||++++++++||
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence            4455678999999999999999999999877643211000        000 00 0001235667899999999999999


Q ss_pred             HHHHH
Q 036950          360 KLCSK  364 (469)
Q Consensus       360 ~~~~~  364 (469)
                      ...+.
T Consensus       143 ~~Le~  147 (167)
T 3ffl_A          143 AILDG  147 (167)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            87553

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.23  E-value=0.01  Score=53.40  Aligned_cols=62  Identities=19%  Similarity=0.194  Sum_probs=47.8

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh----CHHHHHHHHHHH
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK----EYKQAEKLCSKV  365 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~----~~~~ai~~~~~a  365 (469)
                      +..+...|..++..+++.+|+..|++|+..-.                 ..+++|++.+|.. +    ++++|+..+.++
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~-----------------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD-----------------GDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            44566889999999999999999999987421                 4566777777777 6    777777777777


Q ss_pred             Hhhc
Q 036950          366 LELD  369 (469)
Q Consensus       366 l~~d  369 (469)
                      ++..
T Consensus        80 ~~~g   83 (212)
T 3rjv_A           80 VEAG   83 (212)
T ss_dssp             HHTT
T ss_pred             HHCC
Confidence            7655

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=96.17  E-value=0.037  Score=53.10  Aligned_cols=54  Identities=20%  Similarity=0.192  Sum_probs=38.4

Q ss_pred             HhcCCH-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh--CHHHHHHHHHHHHhhc
Q 036950          301 FKAGKY-ERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK--EYKQAEKLCSKVLELD  369 (469)
Q Consensus       301 fk~~~~-~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~--~~~~ai~~~~~al~~d  369 (469)
                      .+.+.| ++|+..|.++|.+.|..               .+++++|+.+...++  .+++++..++.+|..+
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~~---------------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n   99 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELASH---------------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDN   99 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcHH---------------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC
Confidence            344454 57888888888777665               667777777777777  7777777777777666

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.10  E-value=0.022  Score=43.59  Aligned_cols=46  Identities=11%  Similarity=0.072  Sum_probs=33.5

Q ss_pred             HhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHH-HHHHHHHHHHHHH
Q 036950          342 NLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWG-VRMEYKLLKEKVR  403 (469)
Q Consensus       342 ~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~-~~~~l~~~~~~~~  403 (469)
                      ..++|.++++.++|++|+..+++++           +++|++.     . +...+..+.....
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al-----------~~~p~~~-----~~~~~~lg~~~~~~~   49 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFL-----------QTEPVGK-----DEAYYLMGNAYRKLG   49 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHH-----------HHCSSTH-----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH-----------HHCCCcH-----HHHHHHHHHHHHHcC
Confidence            4688999999999999999888777           5566666     5 5555555544443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.07  E-value=0.024  Score=53.71  Aligned_cols=62  Identities=13%  Similarity=0.105  Sum_probs=48.9

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      .....|..+++.++|.+|+..|+.++..-.             ..+...+++|++.++..+|++++|+..+++++
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d-------------~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~  198 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPD-------------KFLAGAAGVAHGVAAANLALFTEAERRLTEAN  198 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCC-------------cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            446778899999999999999987765321             11234578999999999999999999999987

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.91  E-value=0.098  Score=50.64  Aligned_cols=70  Identities=13%  Similarity=0.036  Sum_probs=48.7

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      +..+...|..++..|+|..|...|.+++...+....         ......+++|++.+|..+|+|.+|+..+++++++
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV---------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            344556788888888888888888888887654321         1122455677777777788888887777777764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=95.86  E-value=0.053  Score=52.56  Aligned_cols=27  Identities=11%  Similarity=-0.164  Sum_probs=20.6

Q ss_pred             HHHHHhcCCHH-HHHHHHHHHHHHhcCC
Q 036950          297 GNVLFKAGKYE-RASKRYEQAVNYIGYD  323 (469)
Q Consensus       297 Gn~~fk~~~~~-~A~~~Y~~al~~~~~~  323 (469)
                      -....+.|.|. +|+..+.++|.+.|..
T Consensus        36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~   63 (331)
T 3dss_A           36 VFQKRQAGELDESVLELTSQILGANPDF   63 (331)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCchh
Confidence            33344678877 7999999999988765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=95.86  E-value=0.091  Score=51.27  Aligned_cols=98  Identities=16%  Similarity=0.084  Sum_probs=74.7

Q ss_pred             HhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh-CHHHHHHHHHHHHhhc----------
Q 036950          301 FKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK-EYKQAEKLCSKVLELD----------  369 (469)
Q Consensus       301 fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~-~~~~ai~~~~~al~~d----------  369 (469)
                      -+.+...+|+..+.++|.+.+..               ..++++|..+...++ .+++++..++.+|..+          
T Consensus        65 ~~~e~se~AL~lt~~~L~~nP~~---------------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR  129 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMNPAH---------------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR  129 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHhCchh---------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            34455679999999999988876               789999999999999 5999999999999988          


Q ss_pred             ---------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhh
Q 036950          370 ---------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN-------KKDVQFYGNIFA  418 (469)
Q Consensus       370 ---------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~-------~~e~~~~~~mf~  418 (469)
                                     ++.+.++++++|.|.     .+.....-+-..+....       ..+-..+.+++.
T Consensus       130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy-----~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~  195 (349)
T 3q7a_A          130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNY-----HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR  195 (349)
T ss_dssp             HHHHHHHCCSCCHHHHHHHHHHTSSCTTCH-----HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence                           445778888999999     77766666655554443       244444455444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.85  E-value=0.025  Score=55.99  Aligned_cols=77  Identities=16%  Similarity=0.122  Sum_probs=57.0

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSD--EEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~--e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..++|..+++.|+|.+|++.|.++++..+.......  ............++.|++.+|.++|+|++|+..+.+++.+.
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            346788899999999999999999997765422110  00011122335577999999999999999999999998764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=95.79  E-value=0.059  Score=51.70  Aligned_cols=62  Identities=8%  Similarity=-0.203  Sum_probs=45.9

Q ss_pred             cHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHH----HHh---hCHHHHHHHHH
Q 036950          293 KKEEGNVLFKAG--KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACK----LKL---KEYKQAEKLCS  363 (469)
Q Consensus       293 ~k~~Gn~~fk~~--~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~----~kl---~~~~~ai~~~~  363 (469)
                      +..+|..+...+  +|.+|+..+.++|...|..               ..++++|..+.    .++   +++++++..|+
T Consensus        70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~---------------y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~  134 (306)
T 3dra_A           70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKN---------------YQIWNYRQLIIGQIMELNNNDFDPYREFDILE  134 (306)
T ss_dssp             HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC---------------CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHcccccHHHHHHHHHHHHHHCccc---------------HHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            446888888888  9999999999999987765               44566666666    555   56666666666


Q ss_pred             HHHhhc
Q 036950          364 KVLELD  369 (469)
Q Consensus       364 ~al~~d  369 (469)
                      ++|+.+
T Consensus       135 ~~l~~~  140 (306)
T 3dra_A          135 AMLSSD  140 (306)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            666666

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=95.76  E-value=0.04  Score=56.07  Aligned_cols=81  Identities=17%  Similarity=0.050  Sum_probs=54.8

Q ss_pred             HHhHhHHHHHHHH----hhCHHHHHHHHHHHHhhc-------------------------HHHHHHHHhhCCC---CCCc
Q 036950          339 ITCNLNNAACKLK----LKEYKQAEKLCSKVLELD-------------------------KLDIKKALEIDPD---NSLE  386 (469)
Q Consensus       339 ~~~~~N~a~~~~k----l~~~~~ai~~~~~al~~d-------------------------~~~~~~al~l~p~---~~~~  386 (469)
                      ..+++|++.+|..    .+++++|+..++++++..                         ...|++|++.+|+   +.  
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~--  440 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTE--  440 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHH--
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCH--
Confidence            4578899999999    889999999999998875                         5668888888854   55  


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhh
Q 036950          387 AGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAK  427 (469)
Q Consensus       387 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~~~~~~  427 (469)
                         .+...+..+...   ...+..++..++|.+........
T Consensus       441 ---~a~~~l~~~~~~---~~~~a~~~a~~~~~~~~~~~~~~  475 (490)
T 2xm6_A          441 ---NRNITEKKLTAK---QLQQAELLSQQYIEKYAPEAWAR  475 (490)
T ss_dssp             ---HHHHHHTTSCHH---HHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             ---HHHHHHHhcCHh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence               555555554332   22333345667777655444333

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.68  E-value=0.034  Score=63.27  Aligned_cols=54  Identities=19%  Similarity=0.174  Sum_probs=38.5

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+...|+.++..|+|++|+..|++|-                       .|..+|.||.++|+|+.|++.+.+|...
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence            34568999999999999999998863                       2455666666666666666666666443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.68  E-value=0.083  Score=54.26  Aligned_cols=61  Identities=16%  Similarity=0.322  Sum_probs=43.4

Q ss_pred             HHHHHHHHh-------cCCHH-------HHHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHH
Q 036950          294 KEEGNVLFK-------AGKYE-------RASKRYEQAVN-YIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQA  358 (469)
Q Consensus       294 k~~Gn~~fk-------~~~~~-------~A~~~Y~~al~-~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~a  358 (469)
                      ...|..+.+       .|++.       +|+..|.+|+. +.+..               ..++.+++..+.++|++++|
T Consensus       276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---------------~~l~~~~~~~~~~~g~~~~A  340 (530)
T 2ooe_A          276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMKYEKV  340 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---------------HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCCHHHH
Confidence            356666665       78987       99999999997 66644               45666666666667777777


Q ss_pred             HHHHHHHHhhc
Q 036950          359 EKLCSKVLELD  369 (469)
Q Consensus       359 i~~~~~al~~d  369 (469)
                      +..++++|+++
T Consensus       341 ~~~~~~al~~~  351 (530)
T 2ooe_A          341 HSIYNRLLAIE  351 (530)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHhCcc
Confidence            77666666654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=95.64  E-value=0.13  Score=49.74  Aligned_cols=77  Identities=12%  Similarity=0.028  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh--CHHHHHHHHHHHHhhc--------------
Q 036950          306 YERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK--EYKQAEKLCSKVLELD--------------  369 (469)
Q Consensus       306 ~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~--~~~~ai~~~~~al~~d--------------  369 (469)
                      +.+++..+..++...|.+               ..++++|+.+..+++  .|++++..|+++|+.|              
T Consensus        90 l~~EL~~~~~~L~~~PKn---------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl  154 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKS---------------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  154 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            788999999999877655               789999999999999  4999999999999999              


Q ss_pred             ----------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950          370 ----------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV  402 (469)
Q Consensus       370 ----------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~  402 (469)
                                ++.+.++++.+|+|.     .+...+..+-..+
T Consensus       155 ~~l~~~~~eel~~~~~~I~~~p~N~-----SAW~~R~~ll~~l  192 (331)
T 3dss_A          155 AQAAVAPAEELAFTDSLITRNFSNY-----SSWHYRSCLLPQL  192 (331)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCSCCH-----HHHHHHHHHHHHH
T ss_pred             HHhCcCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHh
Confidence                      567888999999999     7776666655544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.45  E-value=0.039  Score=56.81  Aligned_cols=88  Identities=13%  Similarity=0.015  Sum_probs=66.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      ...|+.+.+.|++++|...|++++...+..+              ..+|.|.+.++.++|++++|+..+++|++..    
T Consensus       325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~  390 (530)
T 2ooe_A          325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH  390 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhCccccCc--------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch
Confidence            3567778889999999999999999654320              1378888888888888888888888888643    


Q ss_pred             --------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 036950          370 --------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKE  400 (469)
Q Consensus       370 --------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~  400 (469)
                                          ...|+++++.+|++.     .+...+..+..
T Consensus       391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~-----~~~~~~~~~~~  436 (530)
T 2ooe_A          391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-----EYVLAYIDYLS  436 (530)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH-----HHHHHHHHHHH
Confidence                                456777888888877     66655555433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=95.34  E-value=0.014  Score=58.81  Aligned_cols=54  Identities=19%  Similarity=0.189  Sum_probs=25.2

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+...|+.||..|+|++|+..|+++                       .-|.++|.|+.++|+|++|++.+.+|...
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~  177 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------------------SNFGRLASTLVHLGEYQAAVDGARKANST  177 (449)
T ss_dssp             -------------CTTTHHHHHHHT-----------------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-----------------------hhHHHHHHHHHHhccHHHHHHHHHHcCCc
Confidence            4456677777777777777777655                       12455666666666666666666666433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.31  E-value=0.013  Score=45.63  Aligned_cols=63  Identities=11%  Similarity=0.120  Sum_probs=50.2

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCS  363 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~  363 (469)
                      .+...|..+++.|+|++|+..|++++...+....         ......++.+++.|+..+|+++.|+..++
T Consensus        40 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           40 GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH---------VAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS---------HHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH---------HHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            4568999999999999999999999998765421         12246788999999999998887765543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.09  E-value=0.08  Score=43.94  Aligned_cols=61  Identities=21%  Similarity=0.132  Sum_probs=43.5

Q ss_pred             hcHHHHHHHHh----cCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHH----hhCHHHHHHHHH
Q 036950          292 KKKEEGNVLFK----AGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLK----LKEYKQAEKLCS  363 (469)
Q Consensus       292 ~~k~~Gn~~fk----~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~k----l~~~~~ai~~~~  363 (469)
                      .....|..++.    .+++.+|+..|++|.+.-  +               ...+.|++.+|..    .+++++|+..++
T Consensus        59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~---------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~  121 (138)
T 1klx_A           59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--D---------------QDGCLILGYKQYAGKGVVKNEKQAVKTFE  121 (138)
T ss_dssp             HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--C---------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence            34466777776    778888888888887641  1               4567788888888    778888888777


Q ss_pred             HHHhhc
Q 036950          364 KVLELD  369 (469)
Q Consensus       364 ~al~~d  369 (469)
                      +|.+..
T Consensus       122 ~Aa~~g  127 (138)
T 1klx_A          122 KACRLG  127 (138)
T ss_dssp             HHHHTT
T ss_pred             HHHHCC
Confidence            777643

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.07  E-value=0.056  Score=52.39  Aligned_cols=70  Identities=16%  Similarity=0.060  Sum_probs=56.3

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +...|..++..|+|.+|+..|.+++...+......       ......++.|++.+|..+|+|++|+..+.+++++.
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  165 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ-------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  165 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT-------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            45789999999999999999999999875322110       01235678999999999999999999999998764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=94.95  E-value=0.094  Score=46.83  Aligned_cols=58  Identities=14%  Similarity=0.054  Sum_probs=35.1

Q ss_pred             cHHHHHHHHhcC----CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHH----hhCHHHHHHHHHH
Q 036950          293 KKEEGNVLFKAG----KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLK----LKEYKQAEKLCSK  364 (469)
Q Consensus       293 ~k~~Gn~~fk~~----~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~k----l~~~~~ai~~~~~  364 (469)
                      +...|..++. +    ++.+|+..|++|++.-  .               ..+++|++.+|..    .+++.+|+..+.+
T Consensus        53 ~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g--~---------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  114 (212)
T 3rjv_A           53 LALLAQLKIR-NPQQADYPQARQLAEKAVEAG--S---------------KSGEIVLARVLVNRQAGATDVAHAITLLQD  114 (212)
T ss_dssp             HHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Confidence            3456666665 5    7777777777776521  1               3455666666665    5566666666666


Q ss_pred             HHhh
Q 036950          365 VLEL  368 (469)
Q Consensus       365 al~~  368 (469)
                      +++.
T Consensus       115 A~~~  118 (212)
T 3rjv_A          115 AARD  118 (212)
T ss_dssp             HTSS
T ss_pred             HHHc
Confidence            6554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=94.87  E-value=0.15  Score=49.81  Aligned_cols=86  Identities=9%  Similarity=-0.111  Sum_probs=69.8

Q ss_pred             HHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHh-h-CHHHHHHHHHHHHhhc-
Q 036950          294 KEEGNVLFKAG-KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL-K-EYKQAEKLCSKVLELD-  369 (469)
Q Consensus       294 k~~Gn~~fk~~-~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl-~-~~~~ai~~~~~al~~d-  369 (469)
                      .-+|..+...+ .+++|+..+.++|...+..               ..++++|..|..++ + ++++++..|+++|+.| 
T Consensus        92 n~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn---------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp  156 (349)
T 3q7a_A           92 QYRFSLLTSLNKSLEDELRLMNEFAVQNLKS---------------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP  156 (349)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC---------------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Confidence            45777787888 5999999999999987765               77899999999998 7 8999999999999988 


Q ss_pred             ------------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950          370 ------------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK  399 (469)
Q Consensus       370 ------------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  399 (469)
                                                    ++.+.++++.+|.|.     .+......+-
T Consensus       157 kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~-----SAW~~R~~lL  211 (349)
T 3q7a_A          157 KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN-----SAWGWRWYLR  211 (349)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHH
Confidence                                          334567788899988     6655555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=94.83  E-value=0.061  Score=39.92  Aligned_cols=47  Identities=23%  Similarity=0.304  Sum_probs=40.0

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK  353 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~  353 (469)
                      .+...|..+++.|+|++|+..|.+++...+..               ..++.|++.++.++|
T Consensus        45 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHhcC
Confidence            34578999999999999999999999987654               567889999988764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=94.74  E-value=0.1  Score=43.21  Aligned_cols=57  Identities=12%  Similarity=-0.057  Sum_probs=49.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHH----hhCHHHHHHHHHHHHhhc
Q 036950          296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLK----LKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~k----l~~~~~ai~~~~~al~~d  369 (469)
                      .|..++..+.+.+|+..|++|.+.-  +               ...++|++.+|..    .+++.+|+..+++|.+..
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g--~---------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN--S---------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC--C---------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC
Confidence            6777778888999999999999852  1               6688999999999    899999999999999876

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.70  E-value=0.11  Score=51.34  Aligned_cols=71  Identities=6%  Similarity=0.011  Sum_probs=59.3

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +.-....|+.++..|+|.+|+..|++++..+....+.         .....+++|++.+|+.+++|.+|...+++++.+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK---------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            3344578999999999999999999999887654322         2346789999999999999999999999999764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.29  E-value=0.18  Score=43.30  Aligned_cols=70  Identities=14%  Similarity=0.057  Sum_probs=59.2

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSF-SDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~-~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +.+....++..+.|+.|+..+..++.+.+.++.. +       -.....++..+|.+++..++|..|...+++||++.
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-------p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            5688899999999999999999999988665543 3       23456678889999999999999999999999765

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.94  E-value=0.85  Score=45.03  Aligned_cols=125  Identities=13%  Similarity=0.045  Sum_probs=89.9

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHH
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD-------SSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLC  362 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~-------~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~  362 (469)
                      ...+-..|......++...|+..|.+|+.+....       ..+-..+...+.+++..+..-++.+++.+|+|.+|+..+
T Consensus       115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l  194 (388)
T 2ff4_A          115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL  194 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3445566777778899999999999999987543       123345667888899999999999999999999999999


Q ss_pred             HHHHhhc------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhh
Q 036950          363 SKVLELD------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN-----KKDVQFYGNIFAK  419 (469)
Q Consensus       363 ~~al~~d------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~-----~~e~~~~~~mf~~  419 (469)
                      ..++..+      ...+-+|+....+..     ++...+..++..+.+..     ..-+..|..++..
T Consensus       195 ~~~~~~~P~~E~~~~~lm~al~~~Gr~~-----~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~~  257 (388)
T 2ff4_A          195 EALTFEHPYREPLWTQLITAYYLSDRQS-----DALGAYRRVKTTLADDLGIDPGPTLRALNERILRQ  257 (388)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHH-----HHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHcC
Confidence            9999888      334444554455544     66667777766665442     2334556665543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=93.56  E-value=0.12  Score=48.79  Aligned_cols=64  Identities=11%  Similarity=-0.006  Sum_probs=50.0

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      .....|..+-..|++.+|+..|++++.-- ..+..           ....++|+++|+.++|+.++|...+++++.
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~-----------~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSP-AGEAC-----------ARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTT-----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44678999999999999999999998421 10111           245779999999999999999887776663

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=93.53  E-value=0.11  Score=52.39  Aligned_cols=62  Identities=18%  Similarity=0.190  Sum_probs=50.9

Q ss_pred             EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEE
Q 036950          189 WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVE  268 (469)
Q Consensus       189 ~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ve  268 (469)
                      .|. .||..|+++.   +.++.+.+|.+.  + |+.+|.+|++||...|.+.-                 +|.+..|.|+
T Consensus       166 ~~~-~dG~~~~~~~---~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF-----------------aGk~a~F~Vt  221 (433)
T 3gty_X          166 EVY-NEEGKKLTSR---EYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY-----------------EGKKYTYKLE  221 (433)
T ss_dssp             EEE-CTTSCEEEEE---EEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE-----------------TTEEEEEEEE
T ss_pred             EEE-ECCEECcCCC---CCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee-----------------CCCeEEEEEE
Confidence            555 6899999752   478888999887  4 99999999999999998732                 3568999999


Q ss_pred             Eeeeee
Q 036950          269 LVSFIK  274 (469)
Q Consensus       269 l~~~~~  274 (469)
                      |.++..
T Consensus       222 V~~Ik~  227 (433)
T 3gty_X          222 VEEVYK  227 (433)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999985

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=93.07  E-value=0.28  Score=49.29  Aligned_cols=79  Identities=9%  Similarity=0.014  Sum_probs=56.6

Q ss_pred             ChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-------------------hH
Q 036950          282 NTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKIT-------------------CN  342 (469)
Q Consensus       282 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~-------------------~~  342 (469)
                      ....-+..+..+-..|+.+++.|+|+.|++.|.+|...         ..|..+-..+..                   -.
T Consensus       140 eA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~---------~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l  210 (449)
T 1b89_A          140 AAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST---------RTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL  210 (449)
T ss_dssp             THHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCH---------HHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCc---------hhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhH
Confidence            34445678888889999999999999999999999432         122221111110                   01


Q ss_pred             hHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          343 LNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       343 ~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+..+|.+.|+|++|+..++++|.++
T Consensus       211 ~~lv~~Yek~G~~eEai~lLe~aL~le  237 (449)
T 1b89_A          211 EELINYYQDRGYFEELITMLEAALGLE  237 (449)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence            235678999999999999999999988

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=92.99  E-value=0.18  Score=38.11  Aligned_cols=41  Identities=27%  Similarity=0.200  Sum_probs=36.0

Q ss_pred             CChHH-HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950          281 MNTQE-KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG  321 (469)
Q Consensus       281 l~~~e-~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~  321 (469)
                      |+..+ .++.|..+-.+|.++=+.|+|.+|+.+|..||.++-
T Consensus         1 M~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~   42 (83)
T 2v6y_A            1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLS   42 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            45556 678899999999999999999999999999999774

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.06  E-value=0.27  Score=52.78  Aligned_cols=58  Identities=22%  Similarity=0.241  Sum_probs=51.6

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV  365 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a  365 (469)
                      +-.++.-|..+|+|+.|+..-++|+.+.|..               -.+|.+||.||.++|+|+.|+-..+.+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse---------------F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDS---------------FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchh---------------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4567888889999999999999999999876               678999999999999999999776665

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=91.95  E-value=0.58  Score=44.72  Aligned_cols=53  Identities=15%  Similarity=0.058  Sum_probs=39.7

Q ss_pred             HHhcC--CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          300 LFKAG--KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       300 ~fk~~--~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..|  +++.|+..|+++....+..             ....+++|   |++++|+|++|....+.+++.
T Consensus       186 ~l~~g~~~~q~A~~~f~El~~~~p~~-------------~~~~lLln---~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          186 KFATNKETATSNFYYYEELSQTFPTW-------------KTQLGLLN---LHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHHTCSTTTHHHHHHHHHHTTSCSH-------------HHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhCCCc-------------ccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence            44445  8999999999987655420             01345566   999999999999999987764

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=91.39  E-value=0.3  Score=39.48  Aligned_cols=43  Identities=28%  Similarity=0.332  Sum_probs=37.5

Q ss_pred             cCCChH-HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950          279 WDMNTQ-EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG  321 (469)
Q Consensus       279 ~~l~~~-e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~  321 (469)
                      ..|+.. +.++.|..+-.++.++=+.++|.+|+.+|..|+.+|-
T Consensus         6 ~~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~   49 (117)
T 2cpt_A            6 SGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL   49 (117)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            356655 7888999999999999999999999999999999874

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=91.20  E-value=0.87  Score=43.34  Aligned_cols=60  Identities=22%  Similarity=0.151  Sum_probs=47.3

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHh
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL  352 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl  352 (469)
                      ....|-.+|+.|+|.+|+..|+.+|..++-....+.++..+++++...|.--+-.+.+.+
T Consensus       117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl  176 (325)
T 3mv2_A          117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIEL  176 (325)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345899999999999999999999999987665566777888888777765555555554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=91.19  E-value=0.45  Score=48.12  Aligned_cols=59  Identities=15%  Similarity=0.067  Sum_probs=46.4

Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHH----hhCHHHHHHHHHHH
Q 036950          294 KEEGNVLFK----AGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLK----LKEYKQAEKLCSKV  365 (469)
Q Consensus       294 k~~Gn~~fk----~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~k----l~~~~~ai~~~~~a  365 (469)
                      ...|..++.    .+++.+|+..|++|+..-                 ...++.|++.+|.+    .+++++|+..+++|
T Consensus       367 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  429 (490)
T 2xm6_A          367 FNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-----------------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA  429 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-----------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            345666666    677777777777777631                 15578999999999    89999999999999


Q ss_pred             Hhhc
Q 036950          366 LELD  369 (469)
Q Consensus       366 l~~d  369 (469)
                      ++.+
T Consensus       430 ~~~~  433 (490)
T 2xm6_A          430 STND  433 (490)
T ss_dssp             HHHH
T ss_pred             HHCC
Confidence            9987

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=91.04  E-value=1.6  Score=41.58  Aligned_cols=61  Identities=15%  Similarity=0.170  Sum_probs=49.4

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK  353 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~  353 (469)
                      ....|-.+|..|+|.+|+..|+.+|..++-....+.++..+++++...|.--+-.+.+.+.
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~  165 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETE  165 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999877666778888888888777665555555553

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=90.97  E-value=2.4  Score=41.38  Aligned_cols=91  Identities=10%  Similarity=0.025  Sum_probs=57.0

Q ss_pred             HHHHHHHHhc---CCHHHHHHHHHHHHHHhcCCC-----------------CCCHHHHHHHHHHH------------HHh
Q 036950          294 KEEGNVLFKA---GKYERASKRYEQAVNYIGYDS-----------------SFSDEEKQQAKVLK------------ITC  341 (469)
Q Consensus       294 k~~Gn~~fk~---~~~~~A~~~Y~~al~~~~~~~-----------------~~~~e~~~~~~~l~------------~~~  341 (469)
                      .-+|..++..   ..+.+|+.+|++|+...|...                 .........+....            ..+
T Consensus       200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~  279 (372)
T 3ly7_A          200 FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSII  279 (372)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHH
Confidence            3455555543   446899999999999887651                 11211111111111            112


Q ss_pred             HhHHHHHHHHhhCHHHHHHHHHHHHhhc----------------------HHHHHHHHhhCCCCC
Q 036950          342 NLNNAACKLKLKEYKQAEKLCSKVLELD----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       342 ~~N~a~~~~kl~~~~~ai~~~~~al~~d----------------------~~~~~~al~l~p~~~  384 (469)
                      |.=+|.+++..|++++|+..+++||.++                      .+.|.+|+.++|...
T Consensus       280 ~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          280 YQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            2225556666799999999999999887                      566777777777654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=90.44  E-value=1.1  Score=45.10  Aligned_cols=31  Identities=3%  Similarity=-0.168  Sum_probs=22.2

Q ss_pred             HHhHhHHHHHHHH----hhCHHHHHHHHHHHHhhc
Q 036950          339 ITCNLNNAACKLK----LKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       339 ~~~~~N~a~~~~k----l~~~~~ai~~~~~al~~d  369 (469)
                      ...+.|++.+|..    ..++.+|+..+.++.+..
T Consensus       318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence            4566777777776    337888888888877664

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=90.37  E-value=0.53  Score=35.49  Aligned_cols=42  Identities=26%  Similarity=0.230  Sum_probs=36.0

Q ss_pred             CCChH-HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950          280 DMNTQ-EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG  321 (469)
Q Consensus       280 ~l~~~-e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~  321 (469)
                      -|++. +-++.|..+-.+|.++=+.|+|.+|+.+|..||.++-
T Consensus         8 ~~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~   50 (83)
T 2w2u_A            8 HMSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLA   50 (83)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            45554 4578999999999999999999999999999999874

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=90.21  E-value=0.37  Score=36.46  Aligned_cols=41  Identities=22%  Similarity=0.254  Sum_probs=35.0

Q ss_pred             CChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950          281 MNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG  321 (469)
Q Consensus       281 l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~  321 (469)
                      |+..+.+..|..+-.++.+.=+.|+|.+|+.+|..|+.++-
T Consensus         4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~   44 (85)
T 2v6x_A            4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLM   44 (85)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            44445677888888999999999999999999999999764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=89.68  E-value=0.37  Score=55.07  Aligned_cols=58  Identities=10%  Similarity=0.055  Sum_probs=36.9

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      -+...|..+.+.|+|.+|+..|.+|=     +               ...|.+.+.|+.++|+|++|+.++..|++.+
T Consensus      1107 vWsqLAKAql~~G~~kEAIdsYiKAd-----D---------------~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A         1107 VWSQLAKAQLQKGMVKEAIDSYIKAD-----D---------------PSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhcC-----C---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence            33456666666666666666666551     1               4456667777777777777777777766443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=89.11  E-value=1.8  Score=40.83  Aligned_cols=65  Identities=14%  Similarity=0.037  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHh-----hCHHHHHHHHHHHHhhc-----------
Q 036950          306 YERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL-----KEYKQAEKLCSKVLELD-----------  369 (469)
Q Consensus       306 ~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl-----~~~~~ai~~~~~al~~d-----------  369 (469)
                      ...|....++|+.+.+..             +.-.+|.-++..|.++     |+.++|..++++||+++           
T Consensus       179 l~~A~a~lerAleLDP~~-------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~Y  245 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSY-------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITY  245 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTH-------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCc-------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence            567777777777776632             2356888899999996     99999999999999998           


Q ss_pred             --------------HHHHHHHHhhCCCC
Q 036950          370 --------------KLDIKKALEIDPDN  383 (469)
Q Consensus       370 --------------~~~~~~al~l~p~~  383 (469)
                                    .+.|++|+..+|..
T Consensus       246 A~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          246 ADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence                          56788888888874

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=89.08  E-value=0.83  Score=35.21  Aligned_cols=37  Identities=16%  Similarity=0.172  Sum_probs=32.8

Q ss_pred             HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950          285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG  321 (469)
Q Consensus       285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~  321 (469)
                      ..++.|..+-.+|.++=+.|+|.+|+.+|..|+.++-
T Consensus        10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~   46 (93)
T 1wfd_A           10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLL   46 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3566788888999999999999999999999999875

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=88.85  E-value=0.86  Score=34.56  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=29.1

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG  321 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~  321 (469)
                      ..|..+-.++.++=+.|+|.+|+.+|..|+.++-
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll   47 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLL   47 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3566677888888999999999999999998874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=87.05  E-value=1.4  Score=44.21  Aligned_cols=27  Identities=19%  Similarity=0.014  Sum_probs=16.2

Q ss_pred             HHhHhHHHHHHHHhh-----CHHHHHHHHHHHH
Q 036950          339 ITCNLNNAACKLKLK-----EYKQAEKLCSKVL  366 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~-----~~~~ai~~~~~al  366 (469)
                      ..+++|++.+|. .|     ++.+|+..+.+|+
T Consensus       283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            345566666666 34     6666666666666

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=87.00  E-value=5.1  Score=29.96  Aligned_cols=55  Identities=16%  Similarity=0.131  Sum_probs=40.8

Q ss_pred             HhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950          342 NLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD  409 (469)
Q Consensus       342 ~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e  409 (469)
                      +..+|.-.=+.|+|.+|+..+..+|    +.|..+++.+|+..         ....++.+..++..+-
T Consensus        22 lv~~Ave~D~~g~y~eAl~lY~~ai----e~l~~alk~e~d~~---------~k~~ir~K~~eY~~RA   76 (83)
T 2w2u_A           22 YAINAVKADKEGNAEEAITNYKKAI----EVLAQLVSLYRDGS---------TAAIYEQMINEYKRRI   76 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH----HHHHHHHHHSTTSS---------THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHH----HHHHHHHHHCCCHH---------HHHHHHHHHHHHHHHH
Confidence            4556677778899999999999999    57888999988876         2344555555555544

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=86.69  E-value=5.5  Score=29.74  Aligned_cols=57  Identities=14%  Similarity=0.099  Sum_probs=42.4

Q ss_pred             HhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          342 NLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQ  411 (469)
Q Consensus       342 ~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~  411 (469)
                      +..+|.-.=+.|+|.+|+..+..+|    +.|..+++.+|+..         ....++.+..++..+-.+
T Consensus        14 lv~~Ave~D~~g~y~eAl~lY~~ai----e~l~~~lk~e~d~~---------~k~~ir~K~~eY~~RAE~   70 (83)
T 2v6y_A           14 YAILAVKADKEGKVEDAITYYKKAI----EVLSQIIVLYPESV---------ARTAYEQMINEYKKRISY   70 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH----HHHHHHHHHCTTCT---------THHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHH----HHHHHHHHHCCCHH---------HHHHHHHHHHHHHHHHHH
Confidence            3455666677899999999999999    57889999998876         344566666666655544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=86.66  E-value=3.3  Score=39.38  Aligned_cols=62  Identities=6%  Similarity=-0.045  Sum_probs=46.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .-.|..++..|++++|++.|+++|...+..             ....++.-++.+|+++|+.+.|...+++..+.
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-------------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~  165 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAE-------------GTTELLLLAIEVALLNNNVSTASTIFDNYTNA  165 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCST-------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCc-------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            367888999999999999999997643310             01445566788899999999998888765543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=86.48  E-value=1.2  Score=34.55  Aligned_cols=33  Identities=6%  Similarity=0.023  Sum_probs=29.1

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD  323 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~  323 (469)
                      .-+...|+.+|+.|++..|+..|++|+.+.|..
T Consensus        47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A           47 SVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            344688999999999999999999999988765

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=86.06  E-value=2.2  Score=41.62  Aligned_cols=58  Identities=7%  Similarity=-0.036  Sum_probs=49.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+..++..|+++.|+...++|+.+-++                ...|.-++.++.-.|++++|+..+++|+.++
T Consensus       283 lal~~l~~gd~d~A~~~l~rAl~Ln~s----------------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~  340 (372)
T 3ly7_A          283 KAVSALVKGKTDESYQAINTGIDLEMS----------------WLNYVLLGKVYEMKGMNREAADAYLTAFNLR  340 (372)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            555677789999999999999998531                3455667999999999999999999999999

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=85.45  E-value=2.2  Score=45.57  Aligned_cols=90  Identities=12%  Similarity=0.008  Sum_probs=54.5

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHH-----hcCCCCCCHHHHHHHHHHH-HHhHhHHHH-HHHHhhCHHHHHHHHHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNY-----IGYDSSFSDEEKQQAKVLK-ITCNLNNAA-CKLKLKEYKQAEKLCSK  364 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~-----~~~~~~~~~e~~~~~~~l~-~~~~~N~a~-~~~kl~~~~~ai~~~~~  364 (469)
                      .+++.|..+.+.++++.|.++|.++-++     +... ..+.+....+..+. ..-.+|.|. ||+++|++++|++.|.+
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~-~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSS-FNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHH-cCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHH
Confidence            3478999999999999999999986322     2111 11222222222222 122345544 89999999999999877


Q ss_pred             HHhhcHHHHHHHHhhCCCC
Q 036950          365 VLELDKLDIKKALEIDPDN  383 (469)
Q Consensus       365 al~~d~~~~~~al~l~p~~  383 (469)
                      .-+.+ ..+.-|....|..
T Consensus       762 ~~~~~-~A~~lA~~~~~~~  779 (814)
T 3mkq_A          762 SQRFS-EAAFLGSTYGLGD  779 (814)
T ss_dssp             TTCHH-HHHHHHHHTTCCH
T ss_pred             cCChH-HHHHHHHHhCCCh
Confidence            55433 3344444555554

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=84.62  E-value=9.9  Score=28.83  Aligned_cols=38  Identities=16%  Similarity=0.131  Sum_probs=33.4

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhC
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEID  380 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~  380 (469)
                      +-.+.-+|-.+++-|+|++||.+..+|.    ..+..|+++-
T Consensus        15 AH~~~RrAe~ll~~gkydeAIech~kAa----~yL~eAmklt   52 (97)
T 2crb_A           15 AHQQSRRADRLLAAGKYEEAISCHRKAT----TYLSEAMKLT   52 (97)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHHHHHHTTC
T ss_pred             hhHhhhHHHHHHhcCCHHHHHHHHHHHH----HHHHHHHHhh
Confidence            5567788999999999999999999998    5788898887

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=84.55  E-value=9.7  Score=28.60  Aligned_cols=60  Identities=20%  Similarity=0.130  Sum_probs=43.6

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQ  411 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~  411 (469)
                      +.-+...|.-.-+.|+|++|+..+..+|    +.|..+++.+|+..         ....++.+..++..+..+
T Consensus        16 A~~lv~~Ave~D~~g~y~eAl~lY~~Ai----e~ll~alk~e~d~~---------~k~~lr~K~~eYl~RAE~   75 (86)
T 4a5x_A           16 AATVLKRAVELDSESRYPQALVCYQEGI----DLLLQVLKGTKDNT---------KRCNLREKISKYMDRAEN   75 (86)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHHHHHHHTCCCHH---------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHhhCCCHH---------HHHHHHHHHHHHHHHHHH
Confidence            4445667777788899999999999999    57888888887754         244566666666655433

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=83.12  E-value=1.8  Score=32.90  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950          286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG  321 (469)
Q Consensus       286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~  321 (469)
                      -+..|...-.++..+.+.|+|++||.++.+|..++.
T Consensus        11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~   46 (97)
T 2crb_A           11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS   46 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            456788888899999999999999999999999875

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=82.90  E-value=9.2  Score=29.18  Aligned_cols=58  Identities=17%  Similarity=0.130  Sum_probs=42.0

Q ss_pred             HhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          342 NLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQF  412 (469)
Q Consensus       342 ~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~  412 (469)
                      +.+.|.-.-+.++|.+|+..+..++    +.|..+++.+|+..         ....++.+..++..+-.++
T Consensus        18 lv~~Ave~D~~g~y~eAl~~Y~~Ai----e~l~~alk~e~~~~---------~k~~l~~K~~eYl~RAE~L   75 (93)
T 1wfd_A           18 VLKRAVELDAESRYQQALVCYQEGI----DMLLQVLKGTKESS---------KRCVLRTKISGYMDRAENI   75 (93)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH----HHHHHHHHTCCCHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH----HHHHHHHHHCCCHH---------HHHHHHHHHHHHHHHHHHH
Confidence            3455666667799999999999999    57888888887755         3455666666666655543

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=82.36  E-value=12  Score=29.91  Aligned_cols=59  Identities=15%  Similarity=0.210  Sum_probs=42.4

Q ss_pred             HhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          342 NLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQF  412 (469)
Q Consensus       342 ~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~  412 (469)
                      +.++|.-.-+.++|.+|+..+..++    +.|..+++.++.+.     .   ....++.+..++..+-..+
T Consensus        21 lv~~Ave~D~ag~y~eAl~lY~~Ai----e~l~~alk~e~~~~-----~---~k~~lr~K~~eYl~RAE~L   79 (117)
T 2cpt_A           21 LASKAAQEDKAGNYEEALQLYQHAV----QYFLHVVKYEAQGD-----K---AKQSIRAKCTEYLDRAEKL   79 (117)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHH----HHHHHHHHTSCCCH-----H---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH----HHHHHHHHhccCCH-----H---HHHHHHHHHHHHHHHHHHH
Confidence            3455555666799999999999999    57888888887666     2   3455666777776665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	469
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	6e-21
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	8e-20
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	2e-18
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	1e-16
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	2e-09
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	4e-17
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	2e-13
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	5e-11
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	5e-17
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	8e-15
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	2e-13
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	1e-15
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	1e-14
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	4e-09
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-15
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	3e-14
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	8e-14
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	4e-11
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	7e-13
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	3e-10
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	3e-08
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-12
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-12
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-09
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	3e-12
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	2e-11
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	4e-11
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	3e-12
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-09
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	1e-08
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	7e-12
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-10
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	5e-09
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	1e-11
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	1e-08
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	8e-11
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	3e-09
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	9e-09
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	3e-07
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	2e-05
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	0.004
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-04
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.001
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	0.004

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 87.3 bits (215), Expect = 6e-21
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 28/172 (16%)

Query: 276 KESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAK 335
           KESW+M+T+EK+E A   KE+G V FK GKY +A  +Y + V+++  +   S++E + ++
Sbjct: 1   KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE 60

Query: 336 VLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLD 372
              +   LN A C LKL+EY +A + C K L LD                       K D
Sbjct: 61  SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 120

Query: 373 IKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLE 424
            +K LE++P N        R++  + ++K +E+N++D + Y N+F K  + +
Sbjct: 121 FEKVLEVNPQNK-----AARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQD 167

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (207), Expect = 8e-20
 Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 28/175 (16%)

Query: 278 SWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVL 337
           SW+MN++EK+E +   KE G V FK GKY++A  +Y++ V+++ Y+SSFS+EE Q+A+ L
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

Query: 338 KITCNLNNAACKLKLKEYKQAEKLCSKV-----------------------LELDKLDIK 374
           ++  +LN A C LKL+ +  A + C+K                         EL + D +
Sbjct: 61  RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 120

Query: 375 KALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLEQAKSA 429
           K L++ P+N        + +  + ++++R    ++ + Y N+F ++ + E    A
Sbjct: 121 KVLQLYPNNK-----AAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKA 170

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 78.6 bits (193), Expect = 2e-18
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 45  KDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTL-ISKSDGVEFTVGDGYFC 103
           +D+ +DGGI ++    G+ + NP +   V +  E R                   D    
Sbjct: 2   EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIP 61

Query: 104 AALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
             + KA++ M++ E+ +L + P+Y FG+ G+P  G    +  NA L   + + S++
Sbjct: 62  IGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFG----IEPNAELIYEVTLKSFE 113

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 73.5 bits (180), Expect = 1e-16
 Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 163 DITKDKKVLKKILKEGDGYENQMMVQWFKLH-DGTVFVKKGHDEEPLFEF-KIDEEQVID 220
           D+ +D  ++++  + G+GY N       ++H +G    +     +  F   + ++  +  
Sbjct: 3   DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIPI 62

Query: 221 GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIK 274
           G+D+A++ M++ E  ++ + P Y FG     K    +  N+ L YEV L SF K
Sbjct: 63  GIDKALEKMQREEQCILHLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFEK 114

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 1   MKKGENAVFTIPPELAYGESGSPP-TIPPNAMLQFDVELLGW 41
           M++ E  +  + P   +GE+G P   I PNA L ++V L  +
Sbjct: 71  MQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 4e-17
 Identities = 42/115 (36%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVE----FTVGDGYFCA 104
           +D G+ K I  EG   E P   D VFV Y   L DGT    S   +    F +G G    
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
           A   A+ TMK GE   +T KP+YA+G  G P       +P NA L   +E+  +K
Sbjct: 69  AWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-----IPPNATLVFEVELFEFK 118

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 2e-13
 Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 12/121 (9%)

Query: 163 DIT--KDKKVLKKILKEGDGYENQMMVQWFKLH------DGTVFVKKGHDEEPLFEFKID 214
           DI+  +D+ VLK I +EG G E  M+     +H      DGT F     D +  F F + 
Sbjct: 4   DISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSS-LDRKDKFSFDLG 62

Query: 215 EEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIK 274
           + +VI   D A+ TMK GEV  +T +PEYA+GS  S      +P N+TL +EVEL  F  
Sbjct: 63  KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKG 119

Query: 275 E 275
           E
Sbjct: 120 E 120

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 5e-11
 Identities = 24/41 (58%), Positives = 27/41 (65%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGW 41
           MK GE    T  PE AYG +GSPP IPPNA L F+VEL  +
Sbjct: 77  MKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 117

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 74.7 bits (183), Expect = 5e-17
 Identities = 36/115 (31%), Positives = 46/115 (40%), Gaps = 9/115 (7%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDG----VEFTVGDGYFCA 104
           KDGG+ K I  EG+    P     V V Y   LE+GT    S        F +G G    
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
                V TM KGE    T++  Y +G  G P       +P  A L   +E+  W 
Sbjct: 68  GWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPK-----IPGGATLIFEVELFEWS 117

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 68.6 bits (167), Expect = 8e-15
 Identities = 45/118 (38%), Positives = 54/118 (45%), Gaps = 12/118 (10%)

Query: 163 DIT--KDKKVLKKILKEGDGYENQMMVQWFKLH------DGTVFVKKGHDEEPLFEFKID 214
           DIT  KD  VLK I KEG G          K+H      +GT F     D    F F + 
Sbjct: 3   DITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSS-RDRGDQFSFNLG 61

Query: 215 EEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
              VI G D  V TM KGEVA  TI  +Y +G   S      +P  +TL +EVEL  +
Sbjct: 62  RGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSP---PKIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTS 43
           M KGE A FTI  +  YG++GSPP IP  A L F+VEL  W++
Sbjct: 76  MTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 118

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 1e-15
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 6/119 (5%)

Query: 163 DIT--KDKKVLKKILKEGDGYENQMMVQWFKLH-DGTVFVKKGHDEEPLFE-FKIDEEQV 218
           D+T  +D  ++++I   G+GY         ++  +G    K     E  FE  + +   +
Sbjct: 1   DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDL 60

Query: 219 IDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKE 277
             GL+RA++ M+KGE ++V ++P YAFGS    KE   +P N+ L YE+ L SF K KE
Sbjct: 61  PYGLERAIQRMEKGEHSIVYLKPSYAFGS--VGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 1e-14
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISK-SDGVEFTVGDGYFCAALA 107
           +DGGI ++I   G+ +  P +   V V  E   +D     +          +      L 
Sbjct: 6   EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLE 65

Query: 108 KAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSD 163
           +A++ M+KGE  ++ +KP YAFG  G+     +  +P NA L   L + S++   +
Sbjct: 66  RAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAKE 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 4e-09
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 1   MKKGENAVFTIPPELAYGESGSPP-TIPPNAMLQFDVELLGWTSVKD 46
           M+KGE+++  + P  A+G  G     IPPNA L++++ L  +   K+
Sbjct: 71  MEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 70.0 bits (170), Expect = 6e-15
 Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 29/157 (18%)

Query: 275 EKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDE-EKQQ 333
           +K  +D   +EK+++A   KEEGN  FK  +   A  +Y++A+++  +   + D+    +
Sbjct: 2   KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 61

Query: 334 AKVLKITCNLNNAACKLKLKEYKQAEKLCSKV-----------------------LELDK 370
            K ++I+CNLN A C  K K+Y +A    SKV                       LE  K
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 121

Query: 371 LDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNK 407
            ++ KA  ++P+N       +R  Y+L   K++E  K
Sbjct: 122 ENLYKAASLNPNNL-----DIRNSYELCVNKLKEARK 153

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 66.7 bits (162), Expect = 3e-14
 Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)

Query: 166 KDKKVLKKILKEGDGYENQMMVQWFKLH------DGTVFVKKGHDEEPLFEFKIDEEQVI 219
           KD+ VLK + + G G E  M+     +H      +G  F    HD    F F I + QVI
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSS-HDRNEPFVFSIGKGQVI 60

Query: 220 DGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
              D  V TMKKGE+  +  +PEYA+G+  S      +P+N+TLF+EVEL+ F
Sbjct: 61  KAWDIGVATMKKGEICHLLCKPEYAYGATGSL---PKIPSNATLFFEVELLDF 110

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 65.6 bits (159), Expect = 8e-14
 Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 49  KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCA 104
           KD G+ K +   G   E P   D V+V Y  +L +G     S    +   F++G G    
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIK 61

Query: 105 ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
           A    V TMKKGE   L  KP+YA+G  G         +PSNA L   +E++ +K
Sbjct: 62  AWDIGVATMKKGEICHLLCKPEYAYGATGSLPK-----IPSNATLFFEVELLDFK 111

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 57.5 bits (138), Expect = 4e-11
 Identities = 23/41 (56%), Positives = 26/41 (63%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGW 41
           MKKGE       PE AYG +GS P IP NA L F+VELL +
Sbjct: 70  MKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 110

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.3 bits (153), Expect = 7e-13
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 1   MKKGENAVFTIPPELAYGESGS-----PPTIPPNAMLQFDVELLG 40
           M  G      IPPELAYG+ G+        IPP ++L FD+E +G
Sbjct: 79  MLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG 123

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 56.0 bits (134), Expect = 3e-10
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 12/110 (10%)

Query: 173 KILKEGDGYE----NQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLD----- 223
                G G E      +   +    +        ++      F+I   +VI G D     
Sbjct: 13  CDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILG 72

Query: 224 -RAVKTMKKGEVALVTIEPEYAFGS--CSSEKELAIVPANSTLFYEVELV 270
              +  M  G    + I PE A+G      +    ++P  S L +++E +
Sbjct: 73  SDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 49.9 bits (118), Expect = 3e-08
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 52  GIFKKILVEGKKWENPKDLDEVFVKYEVRLEDG----TLISKSDGVEFTVGDGYFCA--- 104
           G+     V G           +   Y  +LE+G    +  ++   + F +G G       
Sbjct: 9   GLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 67

Query: 105 ---ALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMV 156
                +  +  M  G K  L + P+ A+G  G    G    +P  + L   +E +
Sbjct: 68  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 64.5 bits (156), Expect = 2e-12
 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 10/118 (8%)

Query: 158 WKTVSDITKDKKVLKKILKEGDGYENQMMVQWF---KLHDGTVFVKKGHDEEPLFEFKID 214
            K V   +           +G+  ++   V       L DG  F       EP       
Sbjct: 99  EKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEP---LSFR 155

Query: 215 EEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
            + VI G    +K +KKG    + I PE A+G          +P NSTL ++VEL+  
Sbjct: 156 LDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPG----IPPNSTLVFDVELLDV 209

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 62.6 bits (151), Expect = 7e-12
 Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGW 41
           +KKG      IPPELAYG++G P  IPPN+ L FDVELL  
Sbjct: 170 IKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDV 209

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 65  ENPKDLDEVFVKYEVRLEDGTLISKSD--GVEFTVGDGYFCAALAKAVKTMKKGEKVLLT 122
           E PKD D V V Y+  L DG     S   G   +           + +K +KKG K+ L 
Sbjct: 120 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV 179

Query: 123 VKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
           + P+ A+GK G P       +P N+ L   +E++  K
Sbjct: 180 IPPELAYGKAGVP------GIPPNSTLVFDVELLDVK 210

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 3e-12
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 9/112 (8%)

Query: 52  GIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALA 107
           G+  + +  G     PK      V Y   LEDG     S       +F +G         
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 108 KAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
           + V  M  G++  LT+ P YA+G  G P       +P +A L   +E++  +
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPG-----IIPPHATLVFDVELLKLE 107

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 170 VLKKILKEGDGYE----NQMMVQWFKLH--DGTVFVKKGHDEEPLFEFKIDEEQVIDGLD 223
           V  + +  GDG       Q  V  +     DG  F       +P F+F + +++VI G +
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKP-FKFMLGKQEVIRGWE 60

Query: 224 RAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
             V  M  G+ A +TI P+YA+G+        I+P ++TL ++VEL+  
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKL 106

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 4e-11
 Identities = 22/41 (53%), Positives = 26/41 (63%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGW 41
           M  G+ A  TI P+ AYG +G P  IPP+A L FDVELL  
Sbjct: 66  MSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 63.3 bits (153), Expect = 3e-12
 Identities = 13/41 (31%), Positives = 16/41 (39%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGW 41
           M  G      +P  LAYG       I PN  L F + L+  
Sbjct: 161 MPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISV 201

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 55.2 bits (132), Expect = 2e-09
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 17/182 (9%)

Query: 104 AALAKAVKTMKKGEKVLLTV-KPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVS 162
            A+AK ++    G ++ LT  + +    K  +       A  +       ++  ++ T +
Sbjct: 28  EAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEAFLTEN 87

Query: 163 DITKDKKVLK-------KILKEGDGYENQMMVQWF---KLHDGTVFVKKGHDEEPLFEFK 212
                  VL             G        V      +L DGTVF       +P     
Sbjct: 88  KNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKP---AT 144

Query: 213 IDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
               QVI G   A++ M  G    + +    A+G  S       +  N TL +++ L+S 
Sbjct: 145 FQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISV 201

Query: 273 IK 274
            K
Sbjct: 202 KK 203

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 52.5 bits (125), Expect = 1e-08
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 50  DGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSD--GVEFTVGDGYFCAALA 107
             G+  K++  G   +  K  D V V+Y  RL DGT+   ++  G   T           
Sbjct: 97  PSGLQYKVINSGNGVKPGKS-DTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWT 155

Query: 108 KAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159
           +A++ M  G    + V    A+G            +  N  L   + ++S K
Sbjct: 156 EALQLMPAGSTWEIYVPSGLAYGPRSVGGP-----IGPNETLIFKIHLISVK 202

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 7e-12
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 15/117 (12%)

Query: 52  GIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS-----------DGVEFTVGDG 100
              K +L +G K   PK  D V   Y   L+DGT+   +             + F VG G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 101 YFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVS 157
                  +A+ TM KGEK  L ++P++A+GK G+P    +  +P NA L   +E+V 
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP----DAKIPPNAKLTFEVELVD 114

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 39/116 (33%), Positives = 50/116 (43%), Gaps = 14/116 (12%)

Query: 169 KVLKKILKEGDGYENQMMVQWFKLH------DGTVFVKKGHDEEPL------FEFKIDEE 216
           K  K +LK+GD                    DGTVF                  FK+   
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 217 QVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272
           +VI G D A+ TM KGE A + IEPE+A+G        A +P N+ L +EVELV  
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDI 115

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 5e-09
 Identities = 23/41 (56%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 1   MKKGENAVFTIPPELAYGESGSP-PTIPPNAMLQFDVELLG 40
           M KGE A   I PE AYG+ G P   IPPNA L F+VEL+ 
Sbjct: 74  MSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVD 114

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 60.6 bits (146), Expect = 1e-11
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 17/78 (21%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVE 60
           M++G+     IP +LAYG +G    IPP + L+FDVEL+   S+KD              
Sbjct: 98  MREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELI---SIKD-------------- 140

Query: 61  GKKWENPKDLDEVFVKYE 78
           G K    +++DE+  K E
Sbjct: 141 GGKGRTAEEVDEILRKAE 158

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 52.1 bits (124), Expect = 1e-08
 Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 9/136 (6%)

Query: 164 ITKDKKVLKKILKEGDGYENQMMVQWFKLH-DGTVFVKKGHDEEPLFE--FKIDEEQVID 220
           +     ++ + +  G G     +    ++H  G +      D              +VI 
Sbjct: 30  VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNEVIK 89

Query: 221 GLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWD 280
           G   A++ M++G+   + I  + A+G         ++P  S L ++VEL+S    K+   
Sbjct: 90  GWTEALQLMREGDRWRLFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISI---KDGGK 143

Query: 281 MNTQEKIEAAGKKKEE 296
             T E+++   +K EE
Sbjct: 144 GRTAEEVDEILRKAEE 159

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (137), Expect = 8e-11
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 50  DGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDG----TLISKSDGVEFTVGDGYFCAA 105
           +G +    +  G     PK  D V + Y   LE+G    + + +    +  +G G     
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 106 LAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVS 157
               +  +  GEK  LT+   YA+G  G P       +P N+ L   +E++ 
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRGFP-----GLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (125), Expect = 3e-09
 Identities = 22/40 (55%), Positives = 24/40 (60%)

Query: 1   MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLG 40
           +  GE A  TIP   AYG  G P  IPPN+ L FDVELL 
Sbjct: 72  LSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (122), Expect = 9e-09
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 167 DKKVLKKILKEGDGYE-----NQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDG 221
           +  V    +  GDG       + + + +    +         D    F+  I   QVI G
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 222 LDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVS 271
            D  +  +  GE A +TI   YA+G         ++P NSTL ++VEL+ 
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRGFP---GLIPPNSTLVFDVELLK 111

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 3e-07
 Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 29/166 (17%)

Query: 272 FIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFS-DEE 330
           F ++ +    +  + +  +   K  GN  FK+  +E A K+Y + + Y+    + + D +
Sbjct: 9   FPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68

Query: 331 KQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV-----------------------LE 367
             + + + ++C LN  ACKLK+ +++ A   C +                         +
Sbjct: 69  GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 128

Query: 368 LDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFY 413
               D+KKA EI P++       ++ E   +K+K++    K+   Y
Sbjct: 129 QALADLKKAQEIAPEDK-----AIQAELLKVKQKIKAQKDKEKAAY 169

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 11/78 (14%)

Query: 194 DGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKE 253
           D                  I     I G +  +  MK  +   + +     +      KE
Sbjct: 17  DNKKLASASAQNYE---LTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYH----VKE 69

Query: 254 LAIVPANSTLFYEVELVS 271
           L     +  + +EV L +
Sbjct: 70  L----QSKPVTFEVVLKA 83

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 67  PKDLDEVFVKYEVRLEDGTLISKSD-GVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKP 125
             + D   + +   +++  L S S    E T+G   F       +  MK  +K  L +  
Sbjct: 2   LANGDIAIIDFTGIVDNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTF 61

Query: 126 QYAFGKNGRP 135
              +      
Sbjct: 62  PSDYHVKELQ 71

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 8/104 (7%)

Query: 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAA 347
           E   + KE+GN     G  + A + Y +A+    ++                        
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 348 CKLKLKEYKQAEKLCSKVLELDKL--------DIKKALEIDPDN 383
           CK    +    +    K   L+ L          ++ L+ + +N
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 104

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 17/159 (10%), Positives = 51/159 (32%), Gaps = 11/159 (6%)

Query: 289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAAC 348
           +A + KE+GN LF   KY  A+  Y +A+      + +          ++          
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 349 KLKLKEYKQAEKLCSKVLELDKL--------DIKKALEIDPDNSLEAGWGVRMEYKLLKE 400
           +    + +  +          ++        ++++A  +  +  L  G  +    ++ K+
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122

Query: 401 ---KVREYNKKDVQFYGNIFAKINKLEQAKSASSMAKQE 436
                 E  +   +   + +       + +      ++ 
Sbjct: 123 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRN 161

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 9/147 (6%)

Query: 283 TQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCN 342
               ++ A + K + N  FKA  YE A K Y QA+     ++ +           +    
Sbjct: 3   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGY 62

Query: 343 LNNAACKLKLKEYKQAEKLCSKVLELDKL--------DIKKALEIDPDNSLEAGWGVRME 394
               A +    + K  +    +      L        D +  +++ P +  +A    +  
Sbjct: 63  ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-DAKMKYQEC 121

Query: 395 YKLLKEKVREYNKKDVQFYGNIFAKIN 421
            K++K+K  E      +   ++   ++
Sbjct: 122 NKIVKQKAFERAIAGDEHKRSVVDSLD 148

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 9/80 (11%), Positives = 28/80 (35%), Gaps = 15/80 (18%)

Query: 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE 354
           E  +  ++AG +E A +   Q               +Q+     +   L  ++   + + 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLW-------------RQEPDNTGVLLLL--SSIHFQCRR 48

Query: 355 YKQAEKLCSKVLELDKLDIK 374
             ++    +  ++ + L  +
Sbjct: 49  LDRSAHFSTLAIKQNPLLAE 68

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 27/116 (23%)

Query: 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSF----------------------- 326
           A K+KE GN  +K   ++ A K Y++A      + ++                       
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 327 ---SDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDK-LDIKKALE 378
                 E ++                 K ++YK A    +K L   +  D+ K  +
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 17/81 (20%)

Query: 71  DEVFVKYEVRLEDGTLISKSDG-----------------VEFTVGDGYFCAALAKAVKTM 113
            ++ V Y  +LE G +   S                   +EF VG+G       +AV  M
Sbjct: 6   VKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDM 65

Query: 114 KKGEKVLLTVKPQYAFGKNGR 134
           + G++  + +  + A+G    
Sbjct: 66  EVGDEKTVKIPAEKAYGNRNE 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	469
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.9
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.9
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.89
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.89
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.88
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.87
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.87
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.86
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.86
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.85
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.85
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.85
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.84
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.84
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.84
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.82
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.82
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.81
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.8
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.79
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.78
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.78
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.77
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.72
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.72
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.48
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.44
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.44
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.39
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.31
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.2
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.04
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.0
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.94
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.84
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	98.82
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.8
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.74
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.62
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.56
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.5
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.49
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.37
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.33
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.29
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.24
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.2
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.19
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.18
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.17
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.12
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.09
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.05
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.04
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.03
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.02
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.01
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.94
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.87
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.85
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.72
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.68
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	97.54
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.45
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	97.35
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.33
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.29
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.99
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.97
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.87
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.82
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.5
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.26
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	95.81
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	95.5
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	94.6
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	94.58
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	93.04
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	93.02
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	90.99
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	88.78
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	88.57
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	86.28
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	85.49
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	85.16
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	84.99

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.90  E-value=3.6e-23  Score=182.38  Aligned_cols=143  Identities=38%  Similarity=0.667  Sum_probs=137.0

Q ss_pred             ccccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCH
Q 036950          276 KESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEY  355 (469)
Q Consensus       276 ~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~  355 (469)
                      ++.|+|+..|+++.|..+++.||.+|+.|+|.+|+..|++||.+++.......+.......+...+|+|+|.||+++++|
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            47899999999999999999999999999999999999999999999888888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          356 KQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQF  412 (469)
Q Consensus       356 ~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~  412 (469)
                      .+|+.+|++||+++                       +.+|+++++++|+|.     .+...+..+..++.++++++++.
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~-----~~~~~l~~~~~~~~~~~e~~kk~  155 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK-----AARLQIFMCQKKAKEHNERDRRT  155 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999998                       789999999999999     99999999999999999999999


Q ss_pred             HHHhhhhhhhc
Q 036950          413 YGNIFAKINKL  423 (469)
Q Consensus       413 ~~~mf~~~~~~  423 (469)
                      |++||.+..+.
T Consensus       156 ~~~~f~~~~~~  166 (168)
T d1kt1a1         156 YANMFKKFAEQ  166 (168)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHhhhhhc
Confidence            99999997754

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=2.2e-23  Score=171.82  Aligned_cols=106  Identities=35%  Similarity=0.596  Sum_probs=100.2

Q ss_pred             cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950           49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK  124 (469)
Q Consensus        49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip  124 (469)
                      .|+|+.|+++++|+|...|..||.|++||++++.||++|++|    .|+.|.+|.+++++||+++|.+|++||+++|.||
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~ip   87 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   87 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccccceeeeeeccCcceeeeeeeeeeeecCCceEEEEEC
Confidence            689999999999999778999999999999999999999987    7999999999999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCCCCceEEEeEeeeeec
Q 036950          125 PQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK  159 (469)
Q Consensus       125 ~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  159 (469)
                      |++|||+.+.+     +.||++++|+|+|+|++|.
T Consensus        88 p~laYG~~g~~-----~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          88 SDYGYGDAGSP-----PKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEE
T ss_pred             HHHhCCcCCCC-----CccCcCCcEEEEEEEEEEe
Confidence            99999998874     5699999999999999985

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.8e-22  Score=178.29  Aligned_cols=143  Identities=37%  Similarity=0.720  Sum_probs=136.9

Q ss_pred             ccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHH
Q 036950          278 SWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQ  357 (469)
Q Consensus       278 ~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~  357 (469)
                      .|+|+.+++++.|..+++.||.+|+.|+|.+|+..|++||.+++.......++......+...+|+|+|.||+++++|++
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            59999999999999999999999999999999999999999999888888888899999999999999999999999999


Q ss_pred             HHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          358 AEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYG  414 (469)
Q Consensus       358 ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~  414 (469)
                      |+.+|++||+++                       +.+|++|++++|+|.     .+...+..+.+++.++.+++++.|+
T Consensus        81 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~-----~~~~~l~~~~~~~~~~~~~e~~~~~  155 (170)
T d1p5qa1          81 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK-----AAKTQLAVCQQRIRRQLAREKKLYA  155 (170)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999                       789999999999999     9999999999999999999999999


Q ss_pred             Hhhhhhhhchh
Q 036950          415 NIFAKINKLEQ  425 (469)
Q Consensus       415 ~mf~~~~~~~~  425 (469)
                      +||.++...++
T Consensus       156 ~~f~~~~~~~~  166 (170)
T d1p5qa1         156 NMFERLAEEEN  166 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhcchh
Confidence            99999886544

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.8e-23  Score=168.94  Aligned_cols=107  Identities=40%  Similarity=0.597  Sum_probs=100.5

Q ss_pred             cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950           49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK  124 (469)
Q Consensus        49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip  124 (469)
                      .|+|++|+++++|+|...|..||.|.+||++++.||++|++|    +|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus         9 ~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip   88 (120)
T d1q1ca1           9 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK   88 (120)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccccccceeeecCCCceeeeeeeeeccccCCcEEEEEEC
Confidence            589999999999999778999999999999999999999987    7899999999999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCCCCceEEEeEeeeeecc
Q 036950          125 PQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKT  160 (469)
Q Consensus       125 ~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  160 (469)
                      |++|||+.+.+     +.||++++|+|+|+|++|..
T Consensus        89 ~~laYG~~g~~-----~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          89 PEYAYGSAGSP-----PKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC
T ss_pred             HHHhCCCcCCC-----CCCCcCCcEEEEEEEEEEeC
Confidence            99999998864     56999999999999999864

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.5e-22  Score=161.90  Aligned_cols=103  Identities=27%  Similarity=0.494  Sum_probs=96.2

Q ss_pred             ceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCc
Q 036950           52 GIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQY  127 (469)
Q Consensus        52 g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~  127 (469)
                      |+.|+++++|+|...|+.||.|++||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|++++|.|||++
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l   80 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHHH
Confidence            689999999999667899999999999999999999987    7899999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCCCCceEEEeEeeeeec
Q 036950          128 AFGKNGRPATGDEDAVPSNANLHITLEMVSWK  159 (469)
Q Consensus       128 ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  159 (469)
                      |||..+.+     +.||++++|+|+|+|+++.
T Consensus        81 aYG~~g~~-----~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          81 AYGATGHP-----GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             TTTTTCBT-----TTBCTTCCEEEEEEEEEEC
T ss_pred             hCCCCCCC-----CCCCcCCeEEEEEEEEEEC
Confidence            99998864     5699999999999999873

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=5.4e-22  Score=162.47  Aligned_cols=105  Identities=26%  Similarity=0.411  Sum_probs=98.2

Q ss_pred             cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950           49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK  124 (469)
Q Consensus        49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip  124 (469)
                      .|+|+.++++++|+|...|+.||.|++||++++.||++|+++    .++.|.++.+++++||+++|.+|++|++++|.||
T Consensus         4 ~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~iP   83 (113)
T d1yata_           4 IEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIP   83 (113)
T ss_dssp             CGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEEC
T ss_pred             ccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccccCCceEeeeeccCceeeehhhhcccccCCCEEEEEec
Confidence            378999999999999667999999999999999999999987    6789999999999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          125 PQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       125 ~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      |++|||..+.+     +.||++++|+|+|+|+++
T Consensus        84 ~~laYG~~g~~-----~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          84 GPYAYGPRGFP-----GLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEE
T ss_pred             hHHeecCcCCC-----CccCcCCeEEEEEEEEEe
Confidence            99999999874     569999999999999986

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.87  E-value=4.3e-23  Score=168.38  Aligned_cols=106  Identities=37%  Similarity=0.587  Sum_probs=84.2

Q ss_pred             cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950           49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK  124 (469)
Q Consensus        49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip  124 (469)
                      +|+|++|+++++|+|...|..||.|++||++++.||++|++|    +|+.|.+|.+++++||+++|.+|++||+++|.||
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~ip   81 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCK   81 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEEC-
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEecceeeeeecCCCcEEeeeeeeehhccCCcEEEEEEC
Confidence            589999999999999778999999999999999999999987    7899999999999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCCCCceEEEeEeeeeec
Q 036950          125 PQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK  159 (469)
Q Consensus       125 ~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  159 (469)
                      |++|||..+..     +.||++++|+|+|+|++|.
T Consensus        82 ~~layG~~g~~-----~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          82 PEYAYGATGSL-----PKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             ---CCCTTTCT-----TTSCTTCCCEEEEEEEEEE
T ss_pred             HHHhCCCCCCC-----CcCCcCCeEEEEEEEEEEC
Confidence            99999998864     5699999999999999873

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.86  E-value=2.1e-22  Score=165.92  Aligned_cols=104  Identities=40%  Similarity=0.594  Sum_probs=95.3

Q ss_pred             cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEE
Q 036950          166 KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTI  239 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i  239 (469)
                      .|+++.++++++|+|...|.     +|| .+++.||++||+| +.++.|++|.+|.+.+++||+.+|.+|++||+++|+|
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss-~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~i   86 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSS-RDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTI   86 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEH-HHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEE
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEc-cccceeeeeeccCcceeeeeeeeeeeecCCceEEEEE
Confidence            56899999999999987776     555 8999999999998 6668899999999999999999999999999999999


Q ss_pred             cCCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          240 EPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       240 ~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      ||++|||+.+.+   +.|||+++|+|+|+|++|.
T Consensus        87 pp~laYG~~g~~---~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          87 RSDYGYGDAGSP---PKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             CGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             CHHHhCCcCCCC---CccCcCCcEEEEEEEEEEe
Confidence            999999999875   4699999999999999985

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.3e-22  Score=163.86  Aligned_cols=105  Identities=44%  Similarity=0.628  Sum_probs=96.2

Q ss_pred             cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEE
Q 036950          166 KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTI  239 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i  239 (469)
                      .|+++.++++++|+|...|.     +|| .+++.||++||+| +.++.|++|.+|.+.+++||+.+|.+|++||+++|+|
T Consensus         9 ~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss-~~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~i   87 (120)
T d1q1ca1           9 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSS-LDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITC   87 (120)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEES-TTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEec-cccccceeeecCCCceeeeeeeeeccccCCcEEEEEE
Confidence            47899999999999987776     555 8999999999998 7778999999999999999999999999999999999


Q ss_pred             cCCCccCCCCCcccccCCCCCceEEEEEEEeeeee
Q 036950          240 EPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIK  274 (469)
Q Consensus       240 ~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~  274 (469)
                      ||++|||+.+..   +.|||+++|+|+|+|++|..
T Consensus        88 p~~laYG~~g~~---~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          88 KPEYAYGSAGSP---PKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             CGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             CHHHhCCCcCCC---CCCCcCCcEEEEEEEEEEeC
Confidence            999999998875   47999999999999999863

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-21  Score=161.18  Aligned_cols=103  Identities=36%  Similarity=0.575  Sum_probs=95.1

Q ss_pred             ceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc-----------ccEEEEECCCccchhHHHHHhcccCCcEEE
Q 036950           52 GIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS-----------DGVEFTVGDGYFCAALAKAVKTMKKGEKVL  120 (469)
Q Consensus        52 g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t-----------~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~  120 (469)
                      .+.|+|+++|+|...|+.||.|+|||++++.||++||+|           +|+.|.+|.+++++||+++|.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            478999999999778999999999999999999999876           488999999999999999999999999999


Q ss_pred             EEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          121 LTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       121 ~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      |.|||++|||+.+.+.    ..||++++|+|+|+|+++
T Consensus        82 ~~ip~~~ayG~~g~~~----~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPD----AKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             EEECGGGTTTTTCBGG----GTBCTTCCEEEEEEEEEE
T ss_pred             EEECHHHhCCccCCCC----CCcCcCCeEEEEEEEEEE
Confidence            9999999999987642    459999999999999986

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.85  E-value=2.4e-22  Score=163.86  Aligned_cols=104  Identities=44%  Similarity=0.670  Sum_probs=76.3

Q ss_pred             cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEE
Q 036950          166 KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTI  239 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i  239 (469)
                      .|+++.++++++|+|...|.     +|+ .+++.||++||+| +.++.|++|.+|++.+++||+.+|.+|++||+++|+|
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss-~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~i   80 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSS-HDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLC   80 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC-------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEEC
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEE-EecceeeeeecCCCcEEeeeeeeehhccCCcEEEEEE
Confidence            36789999999999987777     455 8889999999998 7778999999999999999999999999999999999


Q ss_pred             cCCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          240 EPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       240 ~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      ||++|||+.+..   +.|||+++|+|+|+|++|+
T Consensus        81 p~~layG~~g~~---~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          81 KPEYAYGATGSL---PKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             ----CCCTTTCT---TTSCTTCCCEEEEEEEEEE
T ss_pred             CHHHhCCCCCCC---CcCCcCCeEEEEEEEEEEC
Confidence            999999998875   4799999999999999884

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.85  E-value=7.2e-21  Score=156.45  Aligned_cols=110  Identities=30%  Similarity=0.584  Sum_probs=97.8

Q ss_pred             cccccCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEeccccEEEEECCC---ccchhHHHHHhcccCCcEEEE
Q 036950           45 KDICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDG---YFCAALAKAVKTMKKGEKVLL  121 (469)
Q Consensus        45 ~dv~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t~~~~~~ig~~---~~~~gle~aL~gmk~Ge~~~~  121 (469)
                      +|++.|+|++|+++++|+|...|..||.|++||++++ +|++|++ ++..|.++.+   .+++||+++|.+|++|++++|
T Consensus         2 e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~-~~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~~v   79 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDC-RDVAFTVGEGEDHDIPIGIDKALEKMQREEQCIL   79 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEE-EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred             CccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCccccc-cccCceeeeccccccCchhHhhhccchhhceeEE
Confidence            5788899999999999999779999999999999996 8888876 4667777654   589999999999999999999


Q ss_pred             EEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeecc
Q 036950          122 TVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKT  160 (469)
Q Consensus       122 ~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  160 (469)
                      .|||++|||+.+.+.    ..||++++|+|+|+|++|.+
T Consensus        80 ~ip~~~ayG~~g~~~----~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          80 HLGPRYGFGEAGKPK----FGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             EECGGGSSCTTCBTT----TTBCTTCCEEEEEEEEEEEC
T ss_pred             EeCHHHCcCCCCCCC----CCcCcCCeEEEEEEEEEEEe
Confidence            999999999988752    35999999999999999864

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-21  Score=158.96  Aligned_cols=101  Identities=32%  Similarity=0.552  Sum_probs=91.4

Q ss_pred             hhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCC
Q 036950          169 KVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPE  242 (469)
Q Consensus       169 ~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~  242 (469)
                      |+.++++++|+|...|.     +|+ .++++||++||++ ++++.|++|.+|.+.+++||+.+|.+|++||+++|+|||+
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s-~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~   79 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSS-RDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPD   79 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEH-HHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEee-eccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHH
Confidence            46788999999987776     455 8999999999998 6668999999999999999999999999999999999999


Q ss_pred             CccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          243 YAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       243 ~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      +|||+.+.+   +.||||++|+|+|+|++++
T Consensus        80 laYG~~g~~---~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          80 YAYGATGHP---GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             HhCCCCCCC---CCCCcCCeEEEEEEEEEEC
Confidence            999998875   4699999999999999874

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.8e-21  Score=157.36  Aligned_cols=103  Identities=30%  Similarity=0.436  Sum_probs=94.6

Q ss_pred             chhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEc
Q 036950          167 DKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIE  240 (469)
Q Consensus       167 d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~  240 (469)
                      |+++.++++++|+|...|.     +|+ .+++.||++||++ +....|+.|.+|.+.+++||+.+|.+|++||+++|+||
T Consensus         5 d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~-~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~iP   83 (113)
T d1yata_           5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSS-VDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIP   83 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEES-TTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEEC
T ss_pred             cCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEecc-ccCCceEeeeeccCceeeehhhhcccccCCCEEEEEec
Confidence            6789999999999988776     455 8999999999998 77789999999999999999999999999999999999


Q ss_pred             CCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          241 PEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       241 ~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      |++|||+.+.+   +.|||+++|+|+|+|+++.
T Consensus        84 ~~laYG~~g~~---~~IP~~s~Lif~ieLl~I~  113 (113)
T d1yata_          84 GPYAYGPRGFP---GLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             GGGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             hHHeecCcCCC---CccCcCCeEEEEEEEEEeC
Confidence            99999999875   4699999999999999873

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.84  E-value=5.4e-21  Score=165.81  Aligned_cols=112  Identities=23%  Similarity=0.340  Sum_probs=101.1

Q ss_pred             cccCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950           47 ICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK  124 (469)
Q Consensus        47 v~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip  124 (469)
                      +.+++|++|+++.+|.|...|..||.|.|||++++.||++|+++  .+..|.++.+.+++||+++|.+|++|++++|+||
T Consensus        30 ~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~~~~p~~~~~~~~i~G~~e~l~~M~~Ge~~~v~iP  109 (160)
T d1jvwa_          30 VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNEVIKGWTEALQLMREGDRWRLFIP  109 (160)
T ss_dssp             EECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGGGSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             EECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeeccccCccccCccccchhHHHHhcCccccceeEEEeC
Confidence            45789999999999999667999999999999999999999987  4556778999999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccccc
Q 036950          125 PQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSD  163 (469)
Q Consensus       125 ~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d  163 (469)
                      |++|||..+..     +.||++++|+|+|+|++|.+...
T Consensus       110 p~laYG~~g~~-----~~IPp~s~LifeIeLl~i~~~~~  143 (160)
T d1jvwa_         110 YDLAYGVTGGG-----GMIPPYSPLEFDVELISIKDGGK  143 (160)
T ss_dssp             GGGTTTTTCSS-----SSSCTTCCEEEEEEEEEEGGGCC
T ss_pred             HHHCcCCCCCC-----CCcCcCCcEEEEEEEEEEecCCC
Confidence            99999998764     56999999999999999976544

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.84  E-value=4.1e-21  Score=173.80  Aligned_cols=105  Identities=23%  Similarity=0.335  Sum_probs=96.1

Q ss_pred             ccCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEE
Q 036950           48 CKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTV  123 (469)
Q Consensus        48 ~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~i  123 (469)
                      .+++|+.|+++.+|+| .+|..||.|.+||++++.||++|+++    .|++|  +.+++++||+++|.+|++|++++|+|
T Consensus        95 ~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~--~~~~~i~G~~e~l~~m~~G~~~~~~i  171 (204)
T d1fd9a_          95 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVIPGWTEALQLMPAGSTWEIYV  171 (204)
T ss_dssp             ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEE--EGGGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             EecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCcee--cCCccchhHHHHhcCCCCCCEEEEEE
Confidence            4789999999999999 89999999999999999999999988    45555  55689999999999999999999999


Q ss_pred             cCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeecc
Q 036950          124 KPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKT  160 (469)
Q Consensus       124 p~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  160 (469)
                      ||++|||+.+.+     +.|||+++|+|+|+|++|.+
T Consensus       172 P~~laYG~~g~~-----~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         172 PSGLAYGPRSVG-----GPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             CGGGTTTTCCCS-----SSCCTTCCEEEEEEEEEEEC
T ss_pred             ChHHCcCCCCCC-----CCcCcCCcEEEEEEEEEEEc
Confidence            999999999874     56999999999999999864

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.3e-21  Score=156.08  Aligned_cols=102  Identities=38%  Similarity=0.508  Sum_probs=90.4

Q ss_pred             hhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecC------CCCCCcEEEEcCCCccchhHHHHHhccccCcEEEE
Q 036950          170 VLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKG------HDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALV  237 (469)
Q Consensus       170 l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~------~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~  237 (469)
                      +.|+|+++|+|...|.     +|+ .+++.||++||+|.      .....|++|.+|++.+++||+.+|.+|++||++.|
T Consensus         3 ~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~~   82 (116)
T d1pbka_           3 YTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARL   82 (116)
T ss_dssp             EEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEEE
T ss_pred             ceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEEE
Confidence            5688999999987776     556 89999999999882      12457999999999999999999999999999999


Q ss_pred             EEcCCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          238 TIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       238 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      +|||++|||+.+.+.  ..|||+++|+|+|+|+++.
T Consensus        83 ~ip~~~ayG~~g~~~--~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          83 EIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEC
T ss_pred             EECHHHhCCccCCCC--CCcCcCCeEEEEEEEEEEC
Confidence            999999999988764  5799999999999999874

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2e-20  Score=169.87  Aligned_cols=103  Identities=31%  Similarity=0.551  Sum_probs=95.1

Q ss_pred             ccCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEE
Q 036950           48 CKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTV  123 (469)
Q Consensus        48 ~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~i  123 (469)
                      .+++|+.|+++++|+| ..|..||.|.|||++++.||++|++|    .|+.|.+  +++++||+++|.+|++|++++++|
T Consensus       104 ~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~--~~vi~g~~e~l~~m~~G~k~~~~i  180 (210)
T d1q6ha_         104 TSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVI  180 (210)
T ss_dssp             ECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEEE
T ss_pred             EccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceecc--CccchhHHHHHhhccCCCEEEEEE
Confidence            3789999999999999 89999999999999999999999987    5777766  579999999999999999999999


Q ss_pred             cCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeec
Q 036950          124 KPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK  159 (469)
Q Consensus       124 p~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  159 (469)
                      ||++|||+.+.      +.|||+++|+|+|+|++|.
T Consensus       181 P~~laYG~~g~------~~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         181 PPELAYGKAGV------PGIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             CGGGTTTTTCB------TTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHCcCCCCC------CCCCcCCcEEEEEEEEEEC
Confidence            99999999986      3499999999999999873

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=1.5e-20  Score=156.77  Aligned_cols=110  Identities=21%  Similarity=0.317  Sum_probs=99.0

Q ss_pred             ccCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhc------ccCCc
Q 036950           48 CKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKT------MKKGE  117 (469)
Q Consensus        48 ~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~g------mk~Ge  117 (469)
                      .+++|+.|+++.+|+| .+|+.||.|.+||++++.+|++|++|    .|+.|.+|.+.++++|++++.+      |++|+
T Consensus         5 ~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~G~   83 (125)
T d1u79a_           5 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   83 (125)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccCCC
Confidence            4689999999999999 79999999999999999999999988    7899999999999999999866      99999


Q ss_pred             EEEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950          118 KVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW  158 (469)
Q Consensus       118 ~~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~  158 (469)
                      +++|.|||++|||+.+.......+.||++++|+|+|+|+.+
T Consensus        84 k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          84 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            99999999999999875322223569999999999999875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.81  E-value=1.6e-19  Score=156.16  Aligned_cols=127  Identities=34%  Similarity=0.531  Sum_probs=115.5

Q ss_pred             cccccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHhHhHHHHHHHHhh
Q 036950          275 EKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSD-EEKQQAKVLKITCNLNNAACKLKLK  353 (469)
Q Consensus       275 ~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~-e~~~~~~~l~~~~~~N~a~~~~kl~  353 (469)
                      .++.|+|+.+|+++.|..++++||.+|+.|+|.+|+..|++||.+++......+ ........+.+.+|+|+|.||++++
T Consensus         2 ~~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~   81 (153)
T d2fbna1           2 KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK   81 (153)
T ss_dssp             CCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhc
Confidence            357899999999999999999999999999999999999999999987765544 4556678888999999999999999


Q ss_pred             CHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950          354 EYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN  406 (469)
Q Consensus       354 ~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~  406 (469)
                      +|++|+.+|++||+++                       +.+|+++++++|+|.     ++...+..+.+++++.+
T Consensus        82 ~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~-----~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          82 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL-----DIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHC
Confidence            9999999999999999                       789999999999999     99999999998887654

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.7e-20  Score=151.44  Aligned_cols=108  Identities=31%  Similarity=0.585  Sum_probs=92.2

Q ss_pred             cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEeccccEEEEECCC---ccchhHHHHHhcccCCcEEEEEEcC
Q 036950           49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKSDGVEFTVGDG---YFCAALAKAVKTMKKGEKVLLTVKP  125 (469)
Q Consensus        49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t~~~~~~ig~~---~~~~gle~aL~gmk~Ge~~~~~ip~  125 (469)
                      +|+|+.|+|+++|.|...|..||.|++||++++.+| .+++ .+..+..+.+   .+++||+++|.+|++|++++|.|||
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~-~~~~-~~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i~ip~   83 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK-LFDQ-RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKP   83 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTE-EEEE-EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCC-cEee-ccccceeeecceeeeCcHHHHhhhcchhhCeEEEEECH
Confidence            579999999999999778999999999999998665 4554 3455555543   6899999999999999999999999


Q ss_pred             CccccCCCCCCCCCCCCCCCCceEEEeEeeeeecccc
Q 036950          126 QYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVS  162 (469)
Q Consensus       126 ~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~  162 (469)
                      ++|||..+.+.    ..||++++|+|+|+|+++.+.+
T Consensus        84 ~~ayG~~g~~~----~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          84 SYAFGSVGKEK----FQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             GGTTTTTCBGG----GTBCTTCCEEEEEEEEEEECCC
T ss_pred             HHhCcccCCCC----CccCcCCeEEEEEEEEEEEeCC
Confidence            99999988642    3599999999999999998654

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.79  E-value=7.4e-20  Score=165.45  Aligned_cols=103  Identities=26%  Similarity=0.379  Sum_probs=92.0

Q ss_pred             cchhhhhhhhhcCCCCCCCc----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEc
Q 036950          166 KDKKVLKKILKEGDGYENQM----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIE  240 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~  240 (469)
                      -++|+.++++++|+|.....    +|| .|+|.||++||++ +.++.|++|.+|  .+|+||+.+|.+|++|++++|+||
T Consensus        96 ~~sGl~y~v~~~G~G~~p~~~d~v~v~y~g~l~dg~~f~~s-~~~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~~~~iP  172 (204)
T d1fd9a_          96 LPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDST-EKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIYVP  172 (204)
T ss_dssp             CTTSCEEEEEECCCSCCCCTTCEEEEEEEEEETTSCEEEEH-HHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             ecCccEEEEeecCCCcccCCCCEEEEEEEEEECCCCEeccc-ccCCCCceecCC--ccchhHHHHhcCCCCCCEEEEEEC
Confidence            46899999999999974332    556 9999999999998 666889999887  799999999999999999999999


Q ss_pred             CCCccCCCCCcccccCCCCCceEEEEEEEeeeee
Q 036950          241 PEYAFGSCSSEKELAIVPANSTLFYEVELVSFIK  274 (469)
Q Consensus       241 ~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~  274 (469)
                      |++|||+.|.+   +.||||++|+|+|+|++|.+
T Consensus       173 ~~laYG~~g~~---~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         173 SGLAYGPRSVG---GPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             GGGTTTTCCCS---SSCCTTCCEEEEEEEEEEEC
T ss_pred             hHHCcCCCCCC---CCcCcCCcEEEEEEEEEEEc
Confidence            99999999875   47999999999999999975

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.78  E-value=9.2e-20  Score=157.96  Aligned_cols=109  Identities=23%  Similarity=0.346  Sum_probs=92.8

Q ss_pred             cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEE
Q 036950          166 KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTI  239 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i  239 (469)
                      .++|+.++++++|.|...|.     +|| .+++.||++||++ +....|+.  ++.+.+|+||+.+|.+|++||+++|+|
T Consensus        32 ~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~-~~~~~p~~--~~~~~~i~G~~e~l~~M~~Ge~~~v~i  108 (160)
T d1jvwa_          32 LPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSS-RERGKPTT--FRPNEVIKGWTEALQLMREGDRWRLFI  108 (160)
T ss_dssp             CTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEH-HHHTSCEE--ECGGGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeee-ccccCccc--cCccccchhHHHHhcCccccceeEEEe
Confidence            47789999999999987776     566 9999999999987 44456654  566699999999999999999999999


Q ss_pred             cCCCccCCCCCcccccCCCCCceEEEEEEEeeeeecccccC
Q 036950          240 EPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWD  280 (469)
Q Consensus       240 ~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~~~~~~  280 (469)
                      ||.+|||..|..   +.|||+++|+|+|+|++|.+.+....
T Consensus       109 Pp~laYG~~g~~---~~IPp~s~LifeIeLl~i~~~~~~~~  146 (160)
T d1jvwa_         109 PYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDGGKGRT  146 (160)
T ss_dssp             CGGGTTTTTCSS---SSSCTTCCEEEEEEEEEEGGGCCSCB
T ss_pred             CHHHCcCCCCCC---CCcCcCCcEEEEEEEEEEecCCCCCC
Confidence            999999998865   46999999999999999976554433

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.78  E-value=2.9e-19  Score=146.70  Aligned_cols=104  Identities=29%  Similarity=0.540  Sum_probs=89.3

Q ss_pred             cccccchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCC---ccchhHHHHHhccccC
Q 036950          162 SDITKDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEE---QVIDGLDRAVKTMKKG  232 (469)
Q Consensus       162 ~dv~~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~---~v~~gle~~L~~m~~G  232 (469)
                      +++..|+++.|+++++|+|...|.     +|+ .+++ +|+.|+++      +..|.++.+   .+|+||+.+|.+|++|
T Consensus         2 e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~------~~~~~~~~~~~~~vi~G~~~~l~~M~~G   74 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR------DVAFTVGEGEDHDIPIGIDKALEKMQRE   74 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE------EEEEETTCGGGGTCCHHHHHHHTTCCTT
T ss_pred             CccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc------ccCceeeeccccccCchhHhhhccchhh
Confidence            467789999999999999987776     455 7775 78888764      567777754   6899999999999999


Q ss_pred             cEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeeee
Q 036950          233 EVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIK  274 (469)
Q Consensus       233 e~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~  274 (469)
                      |+++|+|||++|||+.+.+.  ..|||+++|+|+|+|++|.+
T Consensus        75 e~~~v~ip~~~ayG~~g~~~--~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          75 EQCILHLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             CEEEEEECGGGSSCTTCBTT--TTBCTTCCEEEEEEEEEEEC
T ss_pred             ceeEEEeCHHHCcCCCCCCC--CCcCcCCeEEEEEEEEEEEe
Confidence            99999999999999988763  46999999999999999975

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.7e-19  Score=162.38  Aligned_cols=100  Identities=29%  Similarity=0.473  Sum_probs=90.4

Q ss_pred             cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEE
Q 036950          166 KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTI  239 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i  239 (469)
                      .++++.++++++|+|. .|.     +|| .|++.||++||+| +.++.|+.|.+|  .+|+||+.+|.+|++|++++|+|
T Consensus       105 ~~sGl~y~v~~~G~G~-~p~~gd~v~v~y~g~l~dG~~fd~s-~~~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~~i  180 (210)
T d1q6ha_         105 SSTGLVYQVVEAGKGE-APKDSDTVVVNYKGTLIDGKEFDNS-YTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI  180 (210)
T ss_dssp             CTTSCEEEEEECCSSC-CCCTTCEEEEEEEEEETTSCEEEEG-GGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEEE
T ss_pred             ccCceEEEEeeCCCCC-CCCCCceEEEEEEEEEcCCCEEeec-ccCCCcceeccC--ccchhHHHHHhhccCCCEEEEEE
Confidence            4688999999999996 444     566 9999999999998 677899999997  79999999999999999999999


Q ss_pred             cCCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950          240 EPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI  273 (469)
Q Consensus       240 ~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~  273 (469)
                      ||++|||+.|.+    .||||++|+|+|+|++|.
T Consensus       181 P~~laYG~~g~~----~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         181 PPELAYGKAGVP----GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             CGGGTTTTTCBT----TBCTTCCEEEEEEEEEEC
T ss_pred             CHHHCcCCCCCC----CCCcCCcEEEEEEEEEEC
Confidence            999999999864    499999999999999874

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8e-18  Score=138.35  Aligned_cols=103  Identities=38%  Similarity=0.614  Sum_probs=86.4

Q ss_pred             cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCC---ccchhHHHHHhccccCcEEE
Q 036950          166 KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEE---QVIDGLDRAVKTMKKGEVAL  236 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~---~v~~gle~~L~~m~~Ge~~~  236 (469)
                      .|+++.++|+++|+|...|.     +|+ .+++.+|+ |+++      +..+..+.+   .+++||+.||.+|++||+++
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~-~~~~------~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~   78 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR------ELRFEIGEGENLDLPYGLERAIQRMEKGEHSI   78 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE-EEEE------EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc-Eeec------cccceeeecceeeeCcHHHHhhhcchhhCeEE
Confidence            57899999999999987776     455 88887775 4443      455666643   79999999999999999999


Q ss_pred             EEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeeeeccc
Q 036950          237 VTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKE  277 (469)
Q Consensus       237 ~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~~~  277 (469)
                      |+|||++|||..+.+.  ..|||+++|+|+|+|++|.+.++
T Consensus        79 i~ip~~~ayG~~g~~~--~~Ipp~s~l~f~veL~~~~~~kd  117 (117)
T d1q1ca2          79 VYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKE  117 (117)
T ss_dssp             EEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEECCCC
T ss_pred             EEECHHHhCcccCCCC--CccCcCCeEEEEEEEEEEEeCCC
Confidence            9999999999988763  57999999999999999997653

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.72  E-value=2.4e-18  Score=143.23  Aligned_cols=105  Identities=24%  Similarity=0.351  Sum_probs=90.9

Q ss_pred             cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHh------ccccCc
Q 036950          166 KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVK------TMKKGE  233 (469)
Q Consensus       166 ~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~------~m~~Ge  233 (469)
                      .++++.++++++|+|.. |.     +|+ .++++||++||+| +..+.|+.|.+|.+.+++||+.++.      .|++|+
T Consensus         6 ~psGl~y~~~~~G~G~~-p~~gd~V~v~y~g~l~~G~~fdss-~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~G~   83 (125)
T d1u79a_           6 SPSGLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSS-YNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   83 (125)
T ss_dssp             CTTSCEEEEEECCSSCB-CCTTCEEEEEEEEECTTSCEEEEH-HHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             CCCCCEEEEEEeccCCC-CCCCCEEEEEEEeeecCCcEEecc-cccCcceeEecCccccccchhhhccchhhcccccCCC
Confidence            46789999999999964 54     556 8999999999998 6667899999999999999999885      499999


Q ss_pred             EEEEEEcCCCccCCCCCcc--cccCCCCCceEEEEEEEeee
Q 036950          234 VALVTIEPEYAFGSCSSEK--ELAIVPANSTLFYEVELVSF  272 (469)
Q Consensus       234 ~~~~~i~~~~~yg~~~~~~--~~~~ip~~~~l~f~vel~~~  272 (469)
                      +++|+|||++|||++|...  ..+.|||+++|+|+|||+.+
T Consensus        84 k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          84 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            9999999999999987532  12469999999999999975

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=4.7e-16  Score=136.09  Aligned_cols=127  Identities=28%  Similarity=0.526  Sum_probs=111.5

Q ss_pred             ChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHH
Q 036950          282 NTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDS-SFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEK  360 (469)
Q Consensus       282 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~-~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~  360 (469)
                      +.+..+..+..+++.||.+|+.|+|..|+..|++||.+++... .........++++...+|+|||.||+++++|++|+.
T Consensus        19 ~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~   98 (169)
T d1ihga1          19 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD   98 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhh
Confidence            4567788999999999999999999999999999999876432 222344455678889999999999999999999999


Q ss_pred             HHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          361 LCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFY  413 (469)
Q Consensus       361 ~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~  413 (469)
                      +|++||+++                       +.+|++|++++|+|.     .+...+..+..+++++++++|+.|
T Consensus        99 ~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~-----~~~~~l~~~~~~l~~~~~~~k~~y  169 (169)
T d1ihga1          99 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK-----AIQAELLKVKQKIKAQKDKEKAAY  169 (169)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999                       789999999999999     999999999999999999887643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.7e-14  Score=113.75  Aligned_cols=92  Identities=20%  Similarity=0.268  Sum_probs=86.0

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..++++||.+|+.|+|++|+..|+++|...|.+               ..+|+|+|.||+++|+|.+|+.+|+++|++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc---------------hhhhhcccccccccccccccchhhhhHHHh
Confidence            46789999999999999999999999999998876               779999999999999999999999999999


Q ss_pred             c-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 036950          369 D-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKE  400 (469)
Q Consensus       369 d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~  400 (469)
                      +                       +.+|+++++++|++.     .+...+.+++.
T Consensus        67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~l~~l~~  116 (117)
T d1elwa_          67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP-----QLKEGLQNMEA  116 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH-----HHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHhC
Confidence            8                       788999999999999     99999888865

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3e-13  Score=116.54  Aligned_cols=101  Identities=25%  Similarity=0.341  Sum_probs=92.3

Q ss_pred             hHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHH
Q 036950          283 TQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLC  362 (469)
Q Consensus       283 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~  362 (469)
                      .++-++.|..++.+||.+|+.|+|.+|+..|++|+.+.|.+               ..+|.|+|.||+++|+|++|+.+|
T Consensus         3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~   67 (159)
T d1a17a_           3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDA   67 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh---------------hhhhhhhHHHHHhccccchHHHHH
Confidence            45678999999999999999999999999999999998766               789999999999999999999999


Q ss_pred             HHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          363 SKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       363 ~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                      ++||+++                       ..+++++++++|++.     .+...+..+...++
T Consensus        68 ~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~-----~~~~~l~~~~~~~~  126 (159)
T d1a17a_          68 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-----DAKMKYQECNKIVK  126 (159)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHHH
Confidence            9999999                       778999999999999     88888877765543

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.44  E-value=1.1e-13  Score=106.03  Aligned_cols=82  Identities=12%  Similarity=0.199  Sum_probs=74.6

Q ss_pred             CCCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCC
Q 036950           66 NPKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAV  143 (469)
Q Consensus        66 ~~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~i  143 (469)
                      ++.+||.|+|+|+++. ||+.|+++  +++.|.+|.+.++|||+++|.||++|+++.|.|++..+|+..+.         
T Consensus         1 k~a~GD~V~idy~g~~-dG~~~~~~~~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l---------   70 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-DNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL---------   70 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTTCCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG---------
T ss_pred             CCCCCCEEEEEEEEEE-CCEEcccccccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC---------
Confidence            3678999999999996 99999976  78999999999999999999999999999999999999987553         


Q ss_pred             CCCceEEEeEeeeee
Q 036950          144 PSNANLHITLEMVSW  158 (469)
Q Consensus       144 p~~~~l~~~v~l~~~  158 (469)
                       +|.++.|+|+|.++
T Consensus        71 -aGk~~~f~V~v~~V   84 (85)
T d1hxva_          71 -QSKPVTFEVVLKAI   84 (85)
T ss_dssp             -GSCCCEEEEEECCB
T ss_pred             -CCCcEEEEEEEEEe
Confidence             68899999999876

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.44  E-value=4.8e-14  Score=120.22  Aligned_cols=71  Identities=24%  Similarity=0.415  Sum_probs=66.3

Q ss_pred             CCCCCEEEEEEEEEecCCcEEecc-----------------ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccc
Q 036950           67 PKDLDEVFVKYEVRLEDGTLISKS-----------------DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAF  129 (469)
Q Consensus        67 ~~~gd~V~i~y~~~~~~G~~~~~t-----------------~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ay  129 (469)
                      +++||.|.+||++++.||++|++|                 +|+.|.+|.++++|||+++|.||++|+++.|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            678999999999999999999987                 489999999999999999999999999999999999999


Q ss_pred             cCCCCCCC
Q 036950          130 GKNGRPAT  137 (469)
Q Consensus       130 g~~~~~~~  137 (469)
                      |+++....
T Consensus        82 G~~d~~~v   89 (151)
T d1ix5a_          82 GNRNEMLI   89 (151)
T ss_dssp             CSCCSTTB
T ss_pred             cccccCcc
Confidence            99876654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.3e-12  Score=108.37  Aligned_cols=95  Identities=24%  Similarity=0.325  Sum_probs=80.4

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      +.|.++|+.||.+|+.|+|.+|+.+|+++|.+.+.+               ..+++|+|.||.++++|++|+.+|++||+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            468889999999999999999999999999987765               67999999999999999999999999999


Q ss_pred             hc------------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          368 LD------------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       368 ~d------------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                      ++                              +..|++++..+|+ .     ++...+..+++.++
T Consensus        67 l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~-----~~~~~l~~~~k~lk  126 (128)
T d1elra_          67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-P-----DVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H-----HHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHHHHh
Confidence            88                              5667777777765 4     56666666655544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=4.9e-12  Score=112.09  Aligned_cols=80  Identities=31%  Similarity=0.448  Sum_probs=74.6

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      |+.+++.||.+|+.|+|++|+..|++||...|..               ..+|+|+|.||+++|+|++|+.+|++||+++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~---------------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            6789999999999999999999999999998766               7899999999999999999999999999998


Q ss_pred             -----------------------HHHHHHHHhhCCCCC
Q 036950          370 -----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 -----------------------~~~~~~al~l~p~~~  384 (469)
                                             +.+|++|++++|++.
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence                                   678999999988765

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.20  E-value=4.6e-12  Score=107.67  Aligned_cols=66  Identities=33%  Similarity=0.425  Sum_probs=57.3

Q ss_pred             eEE-EEEecCCcEEEecC------------CCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCc
Q 036950          186 MVQ-WFKLHDGTVFVKKG------------HDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSE  251 (469)
Q Consensus       186 ~V~-~~~l~~g~~~d~~~------------~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~  251 (469)
                      +|+ .+++.||++||+|.            ..+.+|++|.+|.++++||||.+|.+|+.|++..|.|||+.|||+....
T Consensus         9 ~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ayG~~d~~   87 (151)
T d1ix5a_           9 KVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAYGNRNEM   87 (151)
T ss_dssp             EECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSSCSCCST
T ss_pred             EEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhccccccC
Confidence            344 88899999999972            1245799999999999999999999999999999999999999986543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5.9e-10  Score=86.80  Aligned_cols=88  Identities=18%  Similarity=0.173  Sum_probs=72.9

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKL  371 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~  371 (469)
                      ...+.|+.+|+.|+|..|+..|++|++..+.......        ....+|.|+|.||.++|+|++|+.++++||     
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~--------~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL-----   73 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTI--------DKVSVLDYLSYAVYQQGDLDKALLLTKKLL-----   73 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSS--------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCc--------cHHHHHHHHhhHHHhcCChHHHHHHHHHHH-----
Confidence            3458999999999999999999999999876533221        135789999999999999999998877766     


Q ss_pred             HHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          372 DIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       372 ~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                            +++|++.     .+...+..+++.+.
T Consensus        74 ------~l~P~~~-----~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          74 ------ELDPEHQ-----RANGNLKYFEYIMA   94 (95)
T ss_dssp             ------HHCTTCH-----HHHHHHHHHHHHHH
T ss_pred             ------HhCcCCH-----HHHHHHHHHHHHhC
Confidence                  7899999     89888888777654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.00  E-value=4.7e-10  Score=95.71  Aligned_cols=82  Identities=15%  Similarity=0.138  Sum_probs=66.8

Q ss_pred             HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950          285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK  364 (469)
Q Consensus       285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~  364 (469)
                      +.+..+..++..|+.+|..|+|++|+..|++||.+.+..+.....   ........+|+|+|.||.++|+|++|+.+|++
T Consensus         4 ~~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~---~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~   80 (156)
T d2hr2a1           4 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF---DHAGFDAFCHAGLAEALAGLRSFDEALHSADK   80 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCC---CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhc---ccchhHHHHHHHHHHHHHHcCccchhhHhhhh
Confidence            346667778889999999999999999999999999876542210   11233467899999999999999999999999


Q ss_pred             HHhhc
Q 036950          365 VLELD  369 (469)
Q Consensus       365 al~~d  369 (469)
                      +|++.
T Consensus        81 al~~~   85 (156)
T d2hr2a1          81 ALHYF   85 (156)
T ss_dssp             HHHHH
T ss_pred             hhhcc
Confidence            99764

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=8.6e-10  Score=87.45  Aligned_cols=85  Identities=13%  Similarity=0.237  Sum_probs=73.5

Q ss_pred             CCCCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCC
Q 036950           65 ENPKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDA  142 (469)
Q Consensus        65 ~~~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~  142 (469)
                      +.++.||.|+|+|+++. ||+.+.+.  +.+.|.+|.+.+++||+++|.||++|++..|.+.....|.....        
T Consensus        13 r~a~~GD~v~id~~~~~-dG~~~~~~~~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~l--------   83 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV-DGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL--------   83 (106)
T ss_dssp             SSCCTTEEEEEEEECCS-SSSCCSTTEEEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCTTT--------
T ss_pred             ccccCCCEEEEEEEEEE-CCEECCCCcccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCchhh--------
Confidence            45688999999999975 89988754  78999999999999999999999999999999987666754332        


Q ss_pred             CCCCceEEEeEeeeeecc
Q 036950          143 VPSNANLHITLEMVSWKT  160 (469)
Q Consensus       143 ip~~~~l~~~v~l~~~~~  160 (469)
                        +|.++.|.|+|.++..
T Consensus        84 --aGK~v~f~V~v~~i~~   99 (106)
T d1l1pa_          84 --KGKAAKFAINLKKVEE   99 (106)
T ss_dssp             --TTCCEEEEEEEEEEEC
T ss_pred             --CCCEEEEEEEEEEecc
Confidence              6889999999999865

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.84  E-value=1.1e-09  Score=88.03  Aligned_cols=85  Identities=11%  Similarity=0.221  Sum_probs=73.4

Q ss_pred             CCCCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCC
Q 036950           65 ENPKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDA  142 (469)
Q Consensus        65 ~~~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~  142 (469)
                      ..++.||.|+|+|+++. ||+.+...  ..+.|.+|.+.+++||+++|.||++|++..|.++....|.....        
T Consensus        22 r~a~~gD~v~id~~~~~-dG~~~~~~~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~l--------   92 (113)
T d1t11a3          22 EAAENGKRVSIDFVGSI-DGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL--------   92 (113)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT--------
T ss_pred             ccccCCCEEEEEEEEEE-CCEEccCCccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcccc--------
Confidence            35789999999999986 89988765  77899999999999999999999999999999987666765433        


Q ss_pred             CCCCceEEEeEeeeeecc
Q 036950          143 VPSNANLHITLEMVSWKT  160 (469)
Q Consensus       143 ip~~~~l~~~v~l~~~~~  160 (469)
                        +|.++.|.|+|.++..
T Consensus        93 --aGk~~~f~v~v~~Ik~  108 (113)
T d1t11a3          93 --KGKAAKFAIKVNKVEA  108 (113)
T ss_dssp             --SSCEEEECCCEEEEEE
T ss_pred             --CCCeEEEEEEEEEEEe
Confidence              6889999999999865

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=98.82  E-value=3.3e-09  Score=80.51  Aligned_cols=73  Identities=14%  Similarity=0.185  Sum_probs=63.2

Q ss_pred             EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEE
Q 036950          189 WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVE  268 (469)
Q Consensus       189 ~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ve  268 (469)
                      .+++ ||+.|+++.   ...++|.+|.+.++|||+.+|.+|++|++..|.+++...|+..+        .+|.++.|+|+
T Consensus        13 ~g~~-dG~~~~~~~---~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~--------laGk~~~f~V~   80 (85)
T d1hxva_          13 TGIV-DNKKLASAS---AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKE--------LQSKPVTFEVV   80 (85)
T ss_dssp             EEEE-TTEECSTTC---CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSG--------GGSCCCEEEEE
T ss_pred             EEEE-CCEEccccc---ccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCccc--------CCCCcEEEEEE
Confidence            5665 999998752   56899999999999999999999999999999999999998754        35789999999


Q ss_pred             Eeeee
Q 036950          269 LVSFI  273 (469)
Q Consensus       269 l~~~~  273 (469)
                      |++++
T Consensus        81 v~~Vk   85 (85)
T d1hxva_          81 LKAIK   85 (85)
T ss_dssp             ECCBC
T ss_pred             EEEeC
Confidence            98763

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.1e-09  Score=83.84  Aligned_cols=91  Identities=12%  Similarity=0.191  Sum_probs=61.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHH---hhCHHHHHHHHHHHHhhc-
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLK---LKEYKQAEKLCSKVLELD-  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~k---l~~~~~ai~~~~~al~~d-  369 (469)
                      -+..|.++..++|.+|.+.|++++...|.+               ..+++|+|.|+++   .+++++|+..++++|+.+ 
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~---------------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~   67 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS---------------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS   67 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---------------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC
Confidence            356788888999999999999999887765               3344444444443   223334444444444433 


Q ss_pred             ------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950          370 ------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       370 ------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  404 (469)
                                              +..|+++++++|+|.     .++..+..+.+++++
T Consensus        68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~-----~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN-----QAKELERLIDKAMKK  121 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCH-----HHHHHHHHHHHHHcC
Confidence                                    445666669999999     899888888777653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=4.5e-08  Score=89.21  Aligned_cols=90  Identities=19%  Similarity=0.069  Sum_probs=79.4

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+...|+.+++.|+|++|+..|++||.+.|.+               ..+|+|+|.||.++|+|++|+.+++++|++
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  100 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  100 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---------------HHHHhhhchHHHHHHHHHHhhhhhhHHHHH
Confidence            57778899999999999999999999999998766               678999999999999999999999999999


Q ss_pred             c-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 036950          369 D-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLL  398 (469)
Q Consensus       369 d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~  398 (469)
                      +                       ...|+++++++|++.     .....+..+
T Consensus       101 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~  148 (259)
T d1xnfa_         101 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP-----FRSLWLYLA  148 (259)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH-----HHHHHHHHH
Confidence            8                       678999999999988     554444433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.2e-07  Score=83.42  Aligned_cols=57  Identities=14%  Similarity=0.092  Sum_probs=27.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      +.|+.+++.|+|++|+..|++||++.+..               ..+|+|+|.||.++|+|++|+.+|++||
T Consensus        41 nlG~~~~~~g~~~~A~~~~~kAl~ldp~~---------------~~a~~~~g~~~~~~g~~~~A~~~~~kAl   97 (192)
T d1hh8a_          41 NIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCchhHHHHHHHHHHHhhhh---------------hhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            44455555555555555555554444333               3444455555555555555544444444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.56  E-value=5.3e-07  Score=71.69  Aligned_cols=87  Identities=13%  Similarity=0.044  Sum_probs=75.0

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKL  371 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~  371 (469)
                      ...+.|..+++.|+|.+|+..|++++...|..               ..+|.++|.||.++++|++|+.++++||     
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~al-----   77 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER---------------EEAWRSLGLTQAENEKDGLAIIALNHAR-----   77 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccccccc---------------chhhhhhhhhhhhhhhHHHhhccccccc-----
Confidence            34678999999999999999999999988765               7899999999999999999988766655     


Q ss_pred             HHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950          372 DIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD  409 (469)
Q Consensus       372 ~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e  409 (469)
                            +++|++.     .+...+..+...+....+..
T Consensus        78 ------~~~p~~~-----~a~~~la~~y~~~g~~~~A~  104 (112)
T d1hxia_          78 ------MLDPKDI-----AVHAALAVSHTNEHNANAAL  104 (112)
T ss_dssp             ------HHCTTCH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred             ------ccccccc-----cchHHHHHHHHHCCCHHHHH
Confidence                  7899999     88888888888877666554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.50  E-value=1.2e-07  Score=79.47  Aligned_cols=92  Identities=13%  Similarity=0.070  Sum_probs=75.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh----------CHHHHHHHHHHHHh
Q 036950          298 NVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK----------EYKQAEKLCSKVLE  367 (469)
Q Consensus       298 n~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~----------~~~~ai~~~~~al~  367 (469)
                      +.+-+.+.|++|+..|++|+...|.+               ..++.|++.|++.++          .+++|+.++++||+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~---------------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~   69 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLD---------------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL   69 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcc---------------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            34556677999999999999999877               778999999999654          45889999999999


Q ss_pred             hc----------------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950          368 LD----------------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD  409 (469)
Q Consensus       368 ~d----------------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e  409 (469)
                      ++                                  .+.|++|++++|+|.     .+++.|..+.+....+.+..
T Consensus        70 l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~-----~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          70 IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-----HYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHTHHHHHHHHH
T ss_pred             hcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHH-----HHHHHHHHHHHHHHHHHHHH
Confidence            98                                  456899999999999     88888888876665555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.1e-07  Score=81.67  Aligned_cols=79  Identities=20%  Similarity=0.131  Sum_probs=67.5

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..+.++.++|..++..|+|..|+..|+++.   +..               ..+++|+|.||+++|+|++|+.+|++||+
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i~---~~~---------------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPH---------------SRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS---SCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhcC---CCC---------------HHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            456678899999999999999999998642   111               44689999999999999999999999999


Q ss_pred             hc-----------------------HHHHHHHHhhCCCCC
Q 036950          368 LD-----------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       368 ~d-----------------------~~~~~~al~l~p~~~  384 (469)
                      +|                       +.+|++|+...|.|.
T Consensus        65 ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~  104 (192)
T d1hh8a_          65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  104 (192)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCc
Confidence            99                       678999998877765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.37  E-value=3.1e-06  Score=73.21  Aligned_cols=83  Identities=13%  Similarity=0.047  Sum_probs=70.5

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-------CCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHH
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDS-------SFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAE  359 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~-------~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai  359 (469)
                      +.....+.+.|+.++..|++..|+..|.+|+.+.+...       .+-..+...+......++.|++.+++++|+|++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            34567788999999999999999999999999876432       23346677888899999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 036950          360 KLCSKVLELD  369 (469)
Q Consensus       360 ~~~~~al~~d  369 (469)
                      .+|+++|+++
T Consensus        88 ~~~~~al~~~   97 (179)
T d2ff4a2          88 AELEALTFEH   97 (179)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhC
Confidence            9999888655

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.33  E-value=3.4e-06  Score=71.89  Aligned_cols=100  Identities=15%  Similarity=0.142  Sum_probs=75.0

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +.-+.+.|..+++.++|.+|+..|++++.+.|..               ..+|.|+|.||..+|+|++|+.++.++|+++
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~---------------~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN---------------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccch---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3445679999999999999999999999987765               7889999999999999999999999999998


Q ss_pred             HH--HHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036950          370 KL--DIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFA  418 (469)
Q Consensus       370 ~~--~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~  418 (469)
                      ..  .+..              .+......+.+....+++.-+++|+++-.
T Consensus       129 P~n~~~~~--------------~l~~~~~~~~~~~e~~kk~~~~~f~~~~~  165 (168)
T d1kt1a1         129 PQNKAARL--------------QIFMCQKKAKEHNERDRRTYANMFKKFAE  165 (168)
T ss_dssp             TTCHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHH--------------HHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Confidence            21  1111              11222233333444556666777777643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.1e-06  Score=70.42  Aligned_cols=64  Identities=16%  Similarity=0.077  Sum_probs=59.3

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|+.+++.|+|.+|+..|.+++.+.+.+               ..+|.|+|.||.++|+|++|+.+++++++++
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          38 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---------------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hhhhcccccccccccccccchhhhhHHHhccch---------------hhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            345678999999999999999999999998876               6789999999999999999999999999998

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=1.2e-06  Score=76.18  Aligned_cols=64  Identities=16%  Similarity=0.217  Sum_probs=58.6

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .-+...|..+++.|+|.+|+..|++|+.+.|..               ..+|.|+|.||+++|+|++|+.++.+|++++
T Consensus        39 ~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~---------------~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          39 VYYTNRALCYLKMQQPEQALADCRRALELDGQS---------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            345688999999999999999999999987765               6789999999999999999999999999987

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.1e-05  Score=68.70  Aligned_cols=63  Identities=14%  Similarity=0.128  Sum_probs=58.5

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .+.+.|..+++.|+|.+|+..|++||.+.|..               ..+|.++|.||.++|+|++|+.++++|++++
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNN---------------EKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccc---------------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            34578999999999999999999999998765               7789999999999999999999999999998

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.19  E-value=4.2e-06  Score=70.18  Aligned_cols=64  Identities=9%  Similarity=0.063  Sum_probs=59.2

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      .-+.+.|..+++.|+|.+|+..|++||.+.|..               ..+|.|+|.||.++|+|++|+.++.++++++
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~---------------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---------------VKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchh---------------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            344589999999999999999999999987765               7799999999999999999999999999998

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.18  E-value=3.3e-06  Score=71.94  Aligned_cols=66  Identities=21%  Similarity=0.113  Sum_probs=59.8

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      .+..+.+.|..+++.|+|.+|+..|++||.+.+..               ..+|+|+|.||.++|+|++|+.++++||++
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---------------TKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh---------------hhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34455678999999999999999999999987755               778999999999999999999999999999


Q ss_pred             c
Q 036950          369 D  369 (469)
Q Consensus       369 d  369 (469)
                      +
T Consensus       141 ~  141 (169)
T d1ihga1         141 A  141 (169)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=5.2e-06  Score=78.37  Aligned_cols=101  Identities=17%  Similarity=0.093  Sum_probs=58.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-------------CCC-HHHHH------HHHHHHHHhHhHHHHHHHHhhC
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDS-------------SFS-DEEKQ------QAKVLKITCNLNNAACKLKLKE  354 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~-------------~~~-~e~~~------~~~~l~~~~~~N~a~~~~kl~~  354 (469)
                      ..|..+-+.+++++|+..|++||.+.|...             ..+ ++...      ..++-...+|.|++.|+.++|+
T Consensus        48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~  127 (315)
T d2h6fa1          48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD  127 (315)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhcc
Confidence            445566666666666666666666655440             000 01111      0111125566777777777777


Q ss_pred             HHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 036950          355 YKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKE  400 (469)
Q Consensus       355 ~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~  400 (469)
                      |++|+.+++++|+++                       +.+++++++++|+|.     .+...+..+-.
T Consensus       128 ~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~-----~a~~~r~~~l~  191 (315)
T d2h6fa1         128 PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN-----SVWNQRYFVIS  191 (315)
T ss_dssp             CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH-----HHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccH-----HHHHHHHHHHH
Confidence            777777777777766                       567777777777777     66655555433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.1e-06  Score=78.38  Aligned_cols=102  Identities=9%  Similarity=-0.018  Sum_probs=68.8

Q ss_pred             HHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCC--------------CCCHHH-----HHHHHHHHHHhHhHHHHHHHHhh
Q 036950          294 KEEGNVLFKAG-KYERASKRYEQAVNYIGYDS--------------SFSDEE-----KQQAKVLKITCNLNNAACKLKLK  353 (469)
Q Consensus       294 k~~Gn~~fk~~-~~~~A~~~Y~~al~~~~~~~--------------~~~~e~-----~~~~~~l~~~~~~N~a~~~~kl~  353 (469)
                      ..+|+.+.+.+ +|++|+..|.+++...+...              ...+..     .-...+-...+|+|++.|+.+++
T Consensus        81 ~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~  160 (315)
T d2h6fa1          81 HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK  160 (315)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHH
Confidence            45566666544 36666666666666554331              011100     00111223678999999999999


Q ss_pred             CHHHHHHHHHHHHhhc-----------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 036950          354 EYKQAEKLCSKVLELD-----------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKE  400 (469)
Q Consensus       354 ~~~~ai~~~~~al~~d-----------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~  400 (469)
                      +|++|+.+|+++|+++                             +..+.++++++|+|.     .+...+..+-.
T Consensus       161 ~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~-----~~~~~l~~ll~  231 (315)
T d2h6fa1         161 LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE-----SAWNYLKGILQ  231 (315)
T ss_dssp             CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCch-----HHHHHHHHHHH
Confidence            9999999999999998                             456777888999988     88777766543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4.4e-06  Score=78.12  Aligned_cols=77  Identities=17%  Similarity=0.154  Sum_probs=67.4

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950          293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---  369 (469)
                      +...|..++..|+|++|+..|++++...+..               ..+|.|+|.||.++|+|++|+.+|+++|+++   
T Consensus       175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  239 (323)
T d1fcha_         175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY  239 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             chhhHHHHHHHHHHhhhhccccccccccccc---------------ccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence            4567999999999999999999999987654               6688999999999999999999999999887   


Q ss_pred             --------------------HHHHHHHHhhCCCCC
Q 036950          370 --------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 --------------------~~~~~~al~l~p~~~  384 (469)
                                          +..|++|++++|++.
T Consensus       240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence                                667888888888877

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.05  E-value=4.8e-06  Score=69.96  Aligned_cols=77  Identities=17%  Similarity=0.116  Sum_probs=60.9

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      ..+..+.+.|+.+++.|+|+.|+..|++++.+++.......+    .......+|+|+|.||.++|+|++|+.++++||+
T Consensus        53 ~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          53 FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD----EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccc----ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667789999999999999999999999988643322211    1233456799999999999999999999888885


Q ss_pred             h
Q 036950          368 L  368 (469)
Q Consensus       368 ~  368 (469)
                      +
T Consensus       129 l  129 (156)
T d2hr2a1         129 M  129 (156)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=8e-06  Score=76.25  Aligned_cols=76  Identities=18%  Similarity=0.096  Sum_probs=68.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      .++|..+++.|+|.+|+..|+++++..|..               ..+|.++|.||..+|+|++|+.+++++++++    
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   87 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---------------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ   87 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc
Confidence            578999999999999999999999987765               6689999999999999999999999999987    


Q ss_pred             -------------------HHHHHHHHhhCCCCC
Q 036950          370 -------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 -------------------~~~~~~al~l~p~~~  384 (469)
                                         ...+++++.++|.+.
T Consensus        88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          88 TALMALAVSFTNESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             cccccccccccccccccccccchhhHHHhccchH
Confidence                               567888888888765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=2.3e-05  Score=70.39  Aligned_cols=64  Identities=16%  Similarity=0.045  Sum_probs=58.1

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|..+++.|+|++|+..|++++.+.+..               ..++.|+|.||..+|+|++|+.+++++++++
T Consensus        72 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  135 (259)
T d1xnfa_          72 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD  135 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh---------------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            345689999999999999999999999987765               4578999999999999999999999999987

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.2e-05  Score=75.76  Aligned_cols=76  Identities=14%  Similarity=0.187  Sum_probs=64.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----  369 (469)
                      .+.|+.+|+.|+|++|+..|+++++..|..               ..++.++|.||+++|+|++|+..++++++++    
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~   67 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDN---------------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA   67 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            468999999999999999999999987754               5678899999999999999999999999876    


Q ss_pred             -------------------HHHHHHHHhhCCCCC
Q 036950          370 -------------------KLDIKKALEIDPDNS  384 (469)
Q Consensus       370 -------------------~~~~~~al~l~p~~~  384 (469)
                                         +..+..+++.+|.+.
T Consensus        68 ~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  101 (388)
T d1w3ba_          68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI  101 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhhhhccccccccccccccccccccc
Confidence                               445666666777766

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.2e-05  Score=67.52  Aligned_cols=64  Identities=14%  Similarity=0.099  Sum_probs=59.2

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|..+++.|+|.+|+..|.+||.+.+..               ..+|.|+|.||..+|+|++|+.++++++.++
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~---------------~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          45 IYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhhhHHHHHhccccchHHHHHHHHHHHcccc---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            345689999999999999999999999998766               7789999999999999999999999999998

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.5e-05  Score=63.10  Aligned_cols=72  Identities=17%  Similarity=0.158  Sum_probs=62.0

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +..+.+.|+.+++.|+|.+|+..|.+||.+.+.....        ......+|.+++.++..+++|++|+.++++++..+
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~--------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            3456689999999999999999999999988755432        33457899999999999999999999999999887

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.9e-05  Score=74.34  Aligned_cols=64  Identities=17%  Similarity=0.082  Sum_probs=42.6

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ..+...|..+++.|++++|+..|++++...+..               ..++.|+|.+|.+++++.+|+..++.++...
T Consensus       238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  301 (388)
T d1w3ba_         238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF---------------PDAYCNLANALKEKGSVAEAEDCYNTALRLC  301 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            344567888899999999999999998876654               3344555555555555555555555555443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.87  E-value=1.8e-05  Score=62.38  Aligned_cols=62  Identities=15%  Similarity=-0.075  Sum_probs=56.3

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL  366 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al  366 (469)
                      +..+...|..+++.+++.+|+..|++|+.+.|..               ..++.|+|.||..+|++++|+++.++.|
T Consensus        50 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          50 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---------------IAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhHHHhhccccccccccccc---------------ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            4455679999999999999999999999998776               7789999999999999999999999876

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2e-05  Score=63.35  Aligned_cols=64  Identities=19%  Similarity=0.143  Sum_probs=51.6

Q ss_pred             cHHHHHHHHhcC---CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          293 KKEEGNVLFKAG---KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       293 ~k~~Gn~~fk~~---~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      +.+.|+.+++.+   ++.+|+..|++++...+             ......+++|+|.||.++|+|++|+.+++++|+++
T Consensus        36 ~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~-------------~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          36 QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-------------KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHhccC-------------CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC
Confidence            346788888744   45679999999987543             12235588999999999999999999999999999

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=7e-05  Score=59.60  Aligned_cols=70  Identities=16%  Similarity=0.178  Sum_probs=53.0

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCC
Q 036950          305 KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNS  384 (469)
Q Consensus       305 ~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~  384 (469)
                      +.++|+..++.+++..+.              ...-+++|+|.+|+++|+|+.|+.+|+++|           +++|+|.
T Consensus        53 d~~~gI~lLe~~~~~~p~--------------~~rd~lY~Lav~yyklgdy~~A~~~~~~~L-----------~ieP~n~  107 (124)
T d2pqrb1          53 DERLGVKILTDIYKEAES--------------RRRECLYYLTIGCYKLGEYSMAKRYVDTLF-----------EHERNNK  107 (124)
T ss_dssp             HHHHHHHHHHHHHHHCGG--------------GHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------HHCTTCH
T ss_pred             HHHHHHHHHHHHHhcCch--------------hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------ccCCCcH
Confidence            345677777766653321              124588999999999999999998888766           8999999


Q ss_pred             CcchHHHHHHHHHHHHHHHH
Q 036950          385 LEAGWGVRMEYKLLKEKVRE  404 (469)
Q Consensus       385 ~~~~~~~~~~l~~~~~~~~~  404 (469)
                           .+......+++++.+
T Consensus       108 -----qA~~L~~~Ie~~~~k  122 (124)
T d2pqrb1         108 -----QVGALKSMVEDKIQK  122 (124)
T ss_dssp             -----HHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhc
Confidence                 888887777776653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=0.00011  Score=67.76  Aligned_cols=79  Identities=10%  Similarity=0.024  Sum_probs=63.8

Q ss_pred             ChHHHHHH-hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHH
Q 036950          282 NTQEKIEA-AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEK  360 (469)
Q Consensus       282 ~~~e~~~~-a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~  360 (469)
                      +...+++. +.-+...||.+...++|++|+..|.+|+.+......         ....+.+|.|+|.||.++++|++|+.
T Consensus        28 ~~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~---------~~~~a~~~~~~g~~y~~~~~~~~A~~   98 (290)
T d1qqea_          28 SDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN---------EDEAGNTYVEAYKCFKSGGNSVNAVD   98 (290)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            33455544 556778899999999999999999999998653311         22347899999999999999999999


Q ss_pred             HHHHHHhhc
Q 036950          361 LCSKVLELD  369 (469)
Q Consensus       361 ~~~~al~~d  369 (469)
                      ++++++++.
T Consensus        99 ~~~~a~~~~  107 (290)
T d1qqea_          99 SLENAIQIF  107 (290)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhhHHh
Confidence            999999875

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=5.3e-05  Score=59.05  Aligned_cols=72  Identities=15%  Similarity=0.235  Sum_probs=56.6

Q ss_pred             cCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeee
Q 036950          193 HDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF  272 (469)
Q Consensus       193 ~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~  272 (469)
                      .||+.+.+.   ....+.|.+|.+.+++||+.+|.+|++|+...|.+.....|...        --+|.++.|.|+|.++
T Consensus        29 ~dG~~~~~~---~~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~--------~laGK~v~f~V~v~~i   97 (106)
T d1l1pa_          29 VDGEEFEGG---KASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAE--------NLKGKAAKFAINLKKV   97 (106)
T ss_dssp             SSSSCCSTT---EEEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCT--------TTTTCCEEEEEEEEEE
T ss_pred             ECCEECCCC---cccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCch--------hhCCCEEEEEEEEEEe
Confidence            367666532   14568999999999999999999999999999998765555432        2357899999999998


Q ss_pred             eec
Q 036950          273 IKE  275 (469)
Q Consensus       273 ~~~  275 (469)
                      .+.
T Consensus        98 ~~~  100 (106)
T d1l1pa_          98 EER  100 (106)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            854

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=0.00025  Score=65.26  Aligned_cols=71  Identities=28%  Similarity=0.319  Sum_probs=58.1

Q ss_pred             hhhcHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          290 AGKKKEEGNVLFK-AGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       290 a~~~k~~Gn~~fk-~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      +..+...|..++. .++|+.|+..|++|+.+.+....         ......++.|+|.+|.++|+|.+|+..+++++..
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~---------~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc---------hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            4455677888876 49999999999999998754321         2345678999999999999999999999999987


Q ss_pred             c
Q 036950          369 D  369 (469)
Q Consensus       369 d  369 (469)
                      .
T Consensus       188 ~  188 (290)
T d1qqea_         188 S  188 (290)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=97.35  E-value=4.6e-05  Score=60.19  Aligned_cols=72  Identities=11%  Similarity=0.203  Sum_probs=56.7

Q ss_pred             cCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeee
Q 036950          193 HDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF  272 (469)
Q Consensus       193 ~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~  272 (469)
                      .||+.|...   ....+.|.+|.+.+++||+.+|.+|++|+...|.+.....|....        -.|.++.|.|+|.++
T Consensus        38 ~dG~~~~~~---~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~--------laGk~~~f~v~v~~I  106 (113)
T d1t11a3          38 IDGVEFEGG---KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN--------LKGKAAKFAIKVNKV  106 (113)
T ss_dssp             SSSSCCTTC---EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT--------TSSCEEEECCCEEEE
T ss_pred             ECCEEccCC---ccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCccc--------cCCCeEEEEEEEEEE
Confidence            478777543   246789999999999999999999999999888876555554322        257899999999998


Q ss_pred             eec
Q 036950          273 IKE  275 (469)
Q Consensus       273 ~~~  275 (469)
                      ...
T Consensus       107 k~~  109 (113)
T d1t11a3         107 EAR  109 (113)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            864

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.33  E-value=0.00016  Score=59.53  Aligned_cols=73  Identities=14%  Similarity=0.128  Sum_probs=56.6

Q ss_pred             hcHHHHHHHHh----------cCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhC-------
Q 036950          292 KKKEEGNVLFK----------AGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE-------  354 (469)
Q Consensus       292 ~~k~~Gn~~fk----------~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~-------  354 (469)
                      .+...|..++.          .+.+++|+..|++|+++.|.+               ..+|.|++.+|..+++       
T Consensus        33 ~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~---------------~~a~~~lG~~y~~~g~~~~~~~~   97 (145)
T d1zu2a1          33 NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK---------------DEAVWCIGNAYTSFAFLTPDETE   97 (145)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh---------------hHHHhhHHHHHHHcccchhhHHH
Confidence            34467777663          456789999999999988766               7789999999998764       


Q ss_pred             ----HHHHHHHHHHHHhhc--HHHHHHHHhh
Q 036950          355 ----YKQAEKLCSKVLELD--KLDIKKALEI  379 (469)
Q Consensus       355 ----~~~ai~~~~~al~~d--~~~~~~al~l  379 (469)
                          |.+|+.++.+||+++  ...+.+.|.+
T Consensus        98 ~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~  128 (145)
T d1zu2a1          98 AKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  128 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHhHHHhhhhhhcccccCCCHHHHHHHHHH
Confidence                799999999999999  3344444443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.29  E-value=0.00037  Score=63.51  Aligned_cols=59  Identities=10%  Similarity=0.050  Sum_probs=54.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ++.++++.|++++|+..|+++++..|.+               ..++.|++.+|..+|+|++|+..++++++++
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d---------------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~   60 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKD---------------ASLRSSFIELLCIDGDFERADEQLMQSIKLF   60 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3678899999999999999999998877               7889999999999999999999999999877

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0012  Score=65.72  Aligned_cols=67  Identities=7%  Similarity=-0.054  Sum_probs=60.7

Q ss_pred             HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950          288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE  367 (469)
Q Consensus       288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~  367 (469)
                      .....+...|..+..+++|++|+..|.+|+.+.|.+               ...|+|+|.+|.+.|++.+|+.++.+||.
T Consensus       150 ~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~---------------~~~~~~Lg~~~~~~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN---------------GQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB---------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            334556789999999999999999999999998876               66899999999999999999999999999


Q ss_pred             hc
Q 036950          368 LD  369 (469)
Q Consensus       368 ~d  369 (469)
                      ++
T Consensus       215 ~~  216 (497)
T d1ya0a1         215 VK  216 (497)
T ss_dssp             SS
T ss_pred             CC
Confidence            87

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.97  E-value=0.0019  Score=54.84  Aligned_cols=75  Identities=12%  Similarity=0.035  Sum_probs=63.6

Q ss_pred             HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950          289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL  368 (469)
Q Consensus       289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~  368 (469)
                      ....+...++.+.+.|+|.+|+..+++++.+.|.+               ..+|.+++.||.++|++.+|+..|+++.+ 
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~---------------e~~~~~l~~al~~~Gr~~eAl~~y~~~~~-  129 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR---------------EPLWTQLITAYYLSDRQSDALGAYRRVKT-  129 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence            44556789999999999999999999999998876               77999999999999999999999998863 


Q ss_pred             cHHHHHHHHhhCCC
Q 036950          369 DKLDIKKALEIDPD  382 (469)
Q Consensus       369 d~~~~~~al~l~p~  382 (469)
                         .+..-+.++|+
T Consensus       130 ---~L~~eLG~~P~  140 (179)
T d2ff4a2         130 ---TLADDLGIDPG  140 (179)
T ss_dssp             ---HHHHHHSCCCC
T ss_pred             ---HHHHHhCCCcC
Confidence               34445566665

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.0034  Score=57.21  Aligned_cols=70  Identities=11%  Similarity=0.003  Sum_probs=57.9

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ++-.--+|..++..|+|++|+..|++++...+...          ......++.++|.||..+|+|++|+..+.+++++.
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~----------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   81 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGW----------FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA   81 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC----------cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            44444578999999999999999999999876432          22345678999999999999999999999999865

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.82  E-value=0.00098  Score=62.12  Aligned_cols=93  Identities=13%  Similarity=0.015  Sum_probs=76.0

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhC--HHHHHHHHHHHHhh
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE--YKQAEKLCSKVLEL  368 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~--~~~ai~~~~~al~~  368 (469)
                      ..+...|+.+...+++.+|+..|++++...|..               ..++.+++.++..+++  +.+|+..|.++|++
T Consensus        74 ~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~---------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  138 (334)
T d1dcea1          74 QHLETEKSPEESAALVKAELGFLESCLRVNPKS---------------YGTWHHRCWLLSRLPEPNWARELELCARFLEA  138 (334)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc---------------HHHHHHhhHHHHHhccccHHHHHHHHHHHHhh
Confidence            344455666777788999999999999987765               6788999999888875  89999999999999


Q ss_pred             c------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950          369 D------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR  403 (469)
Q Consensus       369 d------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  403 (469)
                      +                        +..++++++++|+|.     .+...+..+...+.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~-----~a~~~l~~~~~~~~  192 (334)
T d1dcea1         139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-----SSWHYRSCLLPQLH  192 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH-----HHHHHHHHHHHHHS
T ss_pred             CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHhc
Confidence            8                        667889999999999     88777777755543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.012  Score=53.31  Aligned_cols=67  Identities=12%  Similarity=-0.026  Sum_probs=54.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ...|..++..|+|..|+..|.+++.......         .......++.++|.+|.++|++++|+..+++||++.
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNENARSLR---------LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcc---------cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            4568889999999999999999987654321         134456788999999999999999999999998765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0046  Score=46.29  Aligned_cols=48  Identities=8%  Similarity=-0.003  Sum_probs=39.4

Q ss_pred             hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHh
Q 036950          290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL  352 (469)
Q Consensus       290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl  352 (469)
                      +..+...|+.+++.|+|++|+..|++||.+.|..               ..++.|++.+..-+
T Consensus        46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~---------------~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH---------------QRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHh
Confidence            4556789999999999999999999999998866               55778887665444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.81  E-value=0.0045  Score=57.37  Aligned_cols=43  Identities=12%  Similarity=0.008  Sum_probs=30.3

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKL  397 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~  397 (469)
                      ..++.++|.||..+|++++|+.+|++++           ++||.+.     .....|..
T Consensus       276 ~~~~~~l~~~~~~~~~~~eA~~~~~~ai-----------~ldP~~~-----~y~~~L~~  318 (334)
T d1dcea1         276 LLTIILLMRALDPLLYEKETLQYFSTLK-----------AVDPMRA-----AYLDDLRS  318 (334)
T ss_dssp             HHHHHHHHHHHCTGGGHHHHHHHHHHHH-----------HHCGGGH-----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------HHCcccH-----HHHHHHHH
Confidence            5677788888888888888877777666           6777766     55554433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0095  Score=58.83  Aligned_cols=88  Identities=14%  Similarity=0.084  Sum_probs=55.5

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc--
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--  369 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--  369 (469)
                      .+.+.|..+.+.+++..|+..|.+++...+                 ..++.|++.++.++++|++|+.++.+|++++  
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-----------------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~  184 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYIC-----------------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS  184 (497)
T ss_dssp             ---------------------CCHHHHHHH-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            345667777777777777777777776432                 4688999999999999999999999999988  


Q ss_pred             ---------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 036950          370 ---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEK  401 (469)
Q Consensus       370 ---------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~  401 (469)
                                           ...|.+|+.++|...     .++..|..+-.+
T Consensus       185 ~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~-----~a~~nL~~~~~~  232 (497)
T d1ya0a1         185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP-----AASTNLQKALSK  232 (497)
T ss_dssp             BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH-----HHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHH
Confidence                                 667889999988888     787777766544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=94.60  E-value=0.082  Score=46.43  Aligned_cols=62  Identities=19%  Similarity=0.253  Sum_probs=52.0

Q ss_pred             hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHH----hhCHHHHHHHHHHHH
Q 036950          291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLK----LKEYKQAEKLCSKVL  366 (469)
Q Consensus       291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~k----l~~~~~ai~~~~~al  366 (469)
                      +.+.+.|..+|++++|.+|+..|++|.+.-  +               ..++.|++.+|.+    ..++..|+..+..+.
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~---------------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~   65 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK--E---------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   65 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHHcCCCcchhHHHHHHhhcccc
Confidence            456788999999999999999999998742  2               5577889999988    668999999998888


Q ss_pred             hhc
Q 036950          367 ELD  369 (469)
Q Consensus       367 ~~d  369 (469)
                      ...
T Consensus        66 ~~~   68 (265)
T d1ouva_          66 DLN   68 (265)
T ss_dssp             HTT
T ss_pred             ccc
Confidence            776

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.58  E-value=0.059  Score=48.94  Aligned_cols=29  Identities=10%  Similarity=0.271  Sum_probs=14.3

Q ss_pred             hHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950          341 CNLNNAACKLKLKEYKQAEKLCSKVLELD  369 (469)
Q Consensus       341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d  369 (469)
                      ++...|..+.++++++.|...++++|+..
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~  129 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLAIE  129 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence            34444444555555555555555555433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.04  E-value=0.3  Score=43.92  Aligned_cols=85  Identities=13%  Similarity=0.036  Sum_probs=59.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----
Q 036950          295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----  369 (469)
Q Consensus       295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----  369 (469)
                      ..++...+.|+++.|...|.+++...+...              ..++...+.+..+.++++.|...+.++++..     
T Consensus       104 ~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~--------------~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~  169 (308)
T d2onda1         104 AYADYEESRMKYEKVHSIYNRLLAIEDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH  169 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--------------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhcCCh--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Confidence            345566678899999999999987655431              3356677777778888888888888888766     


Q ss_pred             -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 036950          370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLL  398 (469)
Q Consensus       370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~  398 (469)
                                         ...|+++++..|++.     .+...+..+
T Consensus       170 ~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~-----~~w~~y~~~  212 (308)
T d2onda1         170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-----EYVLAYIDY  212 (308)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhH-----HHHHHHHHH
Confidence                               345667777777776     555444444

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.02  E-value=0.12  Score=38.14  Aligned_cols=65  Identities=15%  Similarity=0.130  Sum_probs=46.1

Q ss_pred             HHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHhHhHHHHH
Q 036950          284 QEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD-SSFSDEEKQQAKVLKITCNLNNAAC  348 (469)
Q Consensus       284 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~-~~~~~e~~~~~~~l~~~~~~N~a~~  348 (469)
                      +..+..|..+-.++.++=+.|+|..|+.+|..|+.++-.. ....+......-.-++.-|++||-.
T Consensus         9 ~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE~   74 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN   74 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence            3567788899999999999999999999999999987532 1112233333334446667777744

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.99  E-value=0.16  Score=35.92  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=31.5

Q ss_pred             HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950          287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG  321 (469)
Q Consensus       287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~  321 (469)
                      ++.|...-.++..+.+.|+|++||.++.+|..++.
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~   39 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS   39 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            66777788899999999999999999999999875

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.78  E-value=0.11  Score=36.81  Aligned_cols=38  Identities=29%  Similarity=0.346  Sum_probs=34.2

Q ss_pred             HHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950          284 QEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG  321 (469)
Q Consensus       284 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~  321 (469)
                      .+.++.|..+-.++..+=+.|+|..|+.+|..|+.++-
T Consensus         5 ~~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~   42 (77)
T d1wr0a1           5 SPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL   42 (77)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.57  E-value=2.8  Score=29.26  Aligned_cols=41  Identities=15%  Similarity=0.153  Sum_probs=34.0

Q ss_pred             HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCC
Q 036950          339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNS  384 (469)
Q Consensus       339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~  384 (469)
                      +-.|.-+|--+++.+.|++||.+..+|.    ..+..|+++ +.+.
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~----~yl~eA~kl-t~s~   48 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKAT----TYLSEAMKL-TESE   48 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHHHHHHTT-CCCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHhC-CCcH
Confidence            3456677888899999999999999998    588999998 5555

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=86.28  E-value=1.2  Score=39.27  Aligned_cols=76  Identities=16%  Similarity=0.210  Sum_probs=50.9

Q ss_pred             hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHH---------HHHH-----------HHHHHHHhHhHHHHHHHH
Q 036950          292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDE---------EKQQ-----------AKVLKITCNLNNAACKLK  351 (469)
Q Consensus       292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e---------~~~~-----------~~~l~~~~~~N~a~~~~k  351 (469)
                      .....|..++..|+|++|+..|++++.+.+........         ...+           ...-....+.+++.+++.
T Consensus        32 ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~  111 (264)
T d1zbpa1          32 LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMV  111 (264)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHh
Confidence            34578999999999999999999999987654110000         0000           001113355677888888


Q ss_pred             hhCHHHHHHHHHHHHh
Q 036950          352 LKEYKQAEKLCSKVLE  367 (469)
Q Consensus       352 l~~~~~ai~~~~~al~  367 (469)
                      .|++++|+..+.++++
T Consensus       112 ~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1         112 SQDYEQVSELALQIEE  127 (264)
T ss_dssp             HTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            8899988887777664

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.49  E-value=2.9  Score=30.15  Aligned_cols=58  Identities=17%  Similarity=0.130  Sum_probs=41.4

Q ss_pred             HhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 036950          342 NLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQF  412 (469)
Q Consensus       342 ~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~  412 (469)
                      +.+.|.-+-+.++|++|+..+.++|    +.|..+++.+|+..         ....++.+..++..+...+
T Consensus        18 l~~~Av~~D~~g~y~eA~~~Y~~ai----e~l~~~~~~e~~~~---------~k~~l~~k~~eYl~RAE~L   75 (93)
T d1wfda_          18 VLKRAVELDAESRYQQALVCYQEGI----DMLLQVLKGTKESS---------KRCVLRTKISGYMDRAENI   75 (93)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH----HHHHHHHHTCCCHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHhhccCCHH---------HHHHHHHHHHHHHHHHHHH
Confidence            3556666667899999999999999    46777787777654         4455666666666665443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=85.16  E-value=0.63  Score=40.26  Aligned_cols=61  Identities=21%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             hcHHHHHHHHh----cCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHH----hhCHHHHHHHHH
Q 036950          292 KKKEEGNVLFK----AGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLK----LKEYKQAEKLCS  363 (469)
Q Consensus       292 ~~k~~Gn~~fk----~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~k----l~~~~~ai~~~~  363 (469)
                      .+.+.|+.++.    .+++..|+..|++|...-.                 ...+.|++.+|.+    .+++..|+.+++
T Consensus       180 A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~-----------------~~a~~~LG~~y~~G~g~~~n~~~A~~~~~  242 (265)
T d1ouva_         180 GCFNAGNMYHHGEGATKNFKEALARYSKACELEN-----------------GGGCFNLGAMQYNGEGVTRNEKQAIENFK  242 (265)
T ss_dssp             HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred             cccchhhhcccCcccccchhhhhhhHhhhhcccC-----------------HHHHHHHHHHHHcCCCCccCHHHHHHHHH
Confidence            34567777776    6789999999999987421                 5577899999987    447888998888


Q ss_pred             HHHhhc
Q 036950          364 KVLELD  369 (469)
Q Consensus       364 ~al~~d  369 (469)
                      +|.+..
T Consensus       243 kAa~~g  248 (265)
T d1ouva_         243 KGCKLG  248 (265)
T ss_dssp             HHHHHT
T ss_pred             HHHHCc
Confidence            887654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=84.99  E-value=1.8  Score=33.22  Aligned_cols=59  Identities=20%  Similarity=0.132  Sum_probs=42.6

Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHH----hhCHHHHHHHHHHH
Q 036950          294 KEEGNVLFK----AGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLK----LKEYKQAEKLCSKV  365 (469)
Q Consensus       294 k~~Gn~~fk----~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~k----l~~~~~ai~~~~~a  365 (469)
                      ...|.-++.    ..++.+|+..|++|.+.-.                 ...+.|++.+|.+    ..++.+|+..+.+|
T Consensus        59 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~-----------------~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A  121 (133)
T d1klxa_          59 RFLGDFYENGKYVKKDLRKAAQYYSKACGLND-----------------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  121 (133)
T ss_dssp             HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             hhHHHhhhhccccchhhHHHHHHHhhhhccCc-----------------chHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence            445665554    5678888888888887422                 4567888988887    45788898888888


Q ss_pred             Hhhc
Q 036950          366 LELD  369 (469)
Q Consensus       366 l~~d  369 (469)
                      .++.
T Consensus       122 a~~G  125 (133)
T d1klxa_         122 CRLG  125 (133)
T ss_dssp             HHTT
T ss_pred             HHCC
Confidence            7643