Citrus Sinensis ID: 036953
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 792 | 2.2.26 [Sep-21-2011] | |||||||
| A2AH22 | 1300 | Activating molecule in BE | no | no | 0.218 | 0.133 | 0.406 | 3e-27 | |
| Q9C0C7 | 1298 | Activating molecule in BE | no | no | 0.218 | 0.133 | 0.406 | 3e-27 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | yes | no | 0.138 | 0.087 | 0.418 | 7e-16 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.146 | 0.076 | 0.421 | 2e-14 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.136 | 0.079 | 0.360 | 5e-12 | |
| Q8W1K8 | 370 | Protein Mut11 OS=Chlamydo | N/A | no | 0.122 | 0.262 | 0.357 | 7e-12 | |
| Q9USN3 | 777 | Probable U3 small nucleol | yes | no | 0.145 | 0.148 | 0.330 | 1e-11 | |
| Q54KL5 | 335 | WD repeat-containing prot | yes | no | 0.178 | 0.420 | 0.299 | 2e-11 | |
| Q5M786 | 334 | WD repeat-containing prot | no | no | 0.121 | 0.287 | 0.357 | 3e-11 | |
| Q498M4 | 334 | WD repeat-containing prot | no | no | 0.121 | 0.287 | 0.357 | 3e-11 |
| >sp|A2AH22|AMRA1_MOUSE Activating molecule in BECN1-regulated autophagy protein 1 OS=Mus musculus GN=Ambra1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 68 AKRGLVSWVEAES-LRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT 126
A+R L VE ++ K L PRST AFSPD LASTH +H + I + +T
Sbjct: 25 AQRLLQELVEDKTRWMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKT 84
Query: 127 GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIA 186
G C+ L GHRRTPW V FHP S ++ASG LD EVR+WD + D IAS+A
Sbjct: 85 GKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLA 144
Query: 187 FHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSL---RAVHFHPHAAPFVLTAE 243
FH +LL +A+ ++++ W ++ +E P V+KT + R V F P ++LTA
Sbjct: 145 FHPTAQLLLIATANEIHFWDWSRRE----PFAVVKTASEMERVRLVRFDP-LGHYLLTAI 199
Query: 244 VN 245
VN
Sbjct: 200 VN 201
|
Regulates autophagy and development of the nervous system. Involved in autophagy in controlling protein turnover during neuronal development, and in regulating normal cell survival and proliferation. Mus musculus (taxid: 10090) |
| >sp|Q9C0C7|AMRA1_HUMAN Activating molecule in BECN1-regulated autophagy protein 1 OS=Homo sapiens GN=AMBRA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 68 AKRGLVSWVEAES-LRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT 126
A+R L VE ++ K L PRST AFSPD LASTH +H + I + +T
Sbjct: 25 AQRLLQELVEDKTRWMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKT 84
Query: 127 GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIA 186
G C+ L GHRRTPW V FHP S ++ASG LD EVR+WD + D IAS+A
Sbjct: 85 GKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLA 144
Query: 187 FHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSL---RAVHFHPHAAPFVLTAE 243
FH +LL +A+ ++++ W ++ +E P V+KT + R V F P ++LTA
Sbjct: 145 FHPTAQLLLIATANEIHFWDWSRRE----PFAVVKTASEMERVRLVRFDP-LGHYLLTAI 199
Query: 244 VN 245
VN
Sbjct: 200 VN 201
|
Regulates autophagy and development of the nervous system. Involved in autophagy in controlling protein turnover during neuronal development, and in regulating normal cell survival and proliferation. Homo sapiens (taxid: 9606) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 7/117 (5%)
Query: 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWV--VRFHPLRSEILASG 156
+ AF PDG TLAS GD T+K+ D Q G CL+ L+GH T WV V F P LAS
Sbjct: 730 FSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGH--TDWVRCVAFSP-DGNTLASS 786
Query: 157 SLDHEVRLWDANTSECIGSCDFYRP-IASIAFHAEGELLAVASGHK-LYIWPYNNKE 211
+ DH ++LWD + +C+ + + + S+AF A+G+ LA SG + + IW Y+ E
Sbjct: 787 AADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGE 843
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 70/128 (54%), Gaps = 12/128 (9%)
Query: 81 LRHLSAKYC--PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR 138
L +S+K C L A AFSPDG TLAS GD TV++ D + CL +L GH
Sbjct: 1142 LWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGH-- 1199
Query: 139 TPWV--VRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY---RPIASIAFHAEGEL 193
T WV V F+P LASGS D VRLW+ N+S+C+ C F + S+ F+ +G +
Sbjct: 1200 TSWVNSVVFNP-DGSTLASGSSDQTVRLWEINSSKCL--CTFQGHTSWVNSVVFNPDGSM 1256
Query: 194 LAVASGHK 201
LA S K
Sbjct: 1257 LASGSSDK 1264
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASG 156
S ++ AFSPDG+ +AS GD T+KI D +G C + L GH + W V F P + +ASG
Sbjct: 969 SVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSP-DGQRVASG 1027
Query: 157 SLDHEVRLWDANTSECIGSCDFYRP-IASIAFHAEGELLAVAS-GHKLYIW 205
S D +++WD + C + + + + S+ F +G+ +A S H + IW
Sbjct: 1028 SDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIW 1078
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8W1K8|MUT11_CHLRE Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A++P+GR LA+ DH++K+ D +TG CL+ L+GH + F +LASGS D
Sbjct: 89 AWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDET 148
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
+RLWD + C+ + P+ S AF +G ++ +S
Sbjct: 149 LRLWDVRSGRCLREVPAHSDPVTSAAFSYDGSMVVTSS 186
|
Part of a complex involved in 'Lys-4' histone H3 methylation. Chlamydomonas reinhardtii (taxid: 3055) |
| >sp|Q9USN3|UTP13_SCHPO Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp13 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILAS 155
R A S DGR +AS D T+K+ D TG + VL GHRR W F+P S LAS
Sbjct: 466 RDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPF-SRQLAS 524
Query: 156 GSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEG-ELLAVASGHKLYIWPYNNKE 211
GS D +R+W+ +T +C+ + + + I + + ++G ++++ A+ + +W ++ E
Sbjct: 525 GSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGE 582
|
Involved in nucleolar processing of pre-18S ribosomal RNA. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 6/147 (4%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D + + S D T+KI D ++G +K L GH+ + V F+P +S ++ SGS D
Sbjct: 95 AWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNP-QSNLIVSGSFDEN 153
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIV 219
VR+WD NT EC + P+ + F+ +G L+ S + IW + ++ I
Sbjct: 154 VRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNT--IS 211
Query: 220 LKTRRSLRAVHFHPHAAPFVLTAEVND 246
+ + + V F P+ FVL +++
Sbjct: 212 TEDGKEVSFVKFSPN-GKFVLAGTLDN 237
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 152
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190
|
Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation. Xenopus tropicalis (taxid: 8364) |
| >sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 152
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190
|
Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 792 | ||||||
| 224132280 | 784 | predicted protein [Populus trichocarpa] | 0.962 | 0.971 | 0.736 | 0.0 | |
| 255585908 | 806 | nucleotide binding protein, putative [Ri | 0.986 | 0.968 | 0.716 | 0.0 | |
| 356572307 | 788 | PREDICTED: uncharacterized protein LOC10 | 0.963 | 0.968 | 0.681 | 0.0 | |
| 356505084 | 809 | PREDICTED: uncharacterized protein LOC10 | 0.962 | 0.941 | 0.678 | 0.0 | |
| 359480074 | 809 | PREDICTED: uncharacterized protein LOC10 | 0.963 | 0.943 | 0.679 | 0.0 | |
| 357510311 | 771 | Activating molecule in BECN1-regulated a | 0.935 | 0.961 | 0.670 | 0.0 | |
| 297848636 | 789 | transducin family protein [Arabidopsis l | 0.958 | 0.961 | 0.621 | 0.0 | |
| 30678798 | 793 | transducin/WD-40 repeat-containing prote | 0.964 | 0.963 | 0.616 | 0.0 | |
| 18379250 | 790 | transducin/WD-40 repeat-containing prote | 0.963 | 0.965 | 0.617 | 0.0 | |
| 296088263 | 773 | unnamed protein product [Vitis vinifera] | 0.919 | 0.941 | 0.653 | 0.0 |
| >gi|224132280|ref|XP_002321300.1| predicted protein [Populus trichocarpa] gi|222862073|gb|EEE99615.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1118 bits (2893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/789 (73%), Positives = 644/789 (81%), Gaps = 27/789 (3%)
Query: 26 RNVSRLLAHREISPKTKYVPKRQWVDASKLK---TCGPSDSSVRDAKRGLVSWVEAESLR 82
RN LL REI P+TK+ PKR+W +AS+ + P RDAKRGL+SW EAESLR
Sbjct: 1 RNALCLLVQREICPRTKHTPKRRWGEASQWNYNSSSVPKTEPARDAKRGLISWAEAESLR 60
Query: 83 HLSAKYCPLVPPPRSTIAAAFSPDGRTLASTH------GDHTVKIIDCQTGNCLKVLSGH 136
HLSA+YCPLVPPPRSTIAAAFSPDG+TLAST GDHTVKIIDCQTG CLKVL GH
Sbjct: 61 HLSAQYCPLVPPPRSTIAAAFSPDGKTLASTQQVLLLCGDHTVKIIDCQTGICLKVLMGH 120
Query: 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAV 196
RRTPWVVRFHPL EILASGSLDHEVRLWDANTSECIGS DFYRPIASIAFHAEGELLAV
Sbjct: 121 RRTPWVVRFHPLHPEILASGSLDHEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLAV 180
Query: 197 ASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTR 256
ASGHKLYIW YN + EASSP IVLKTRRSLRAVHFHPH APF+LTAEVNDLDSSDSSMTR
Sbjct: 181 ASGHKLYIWHYNKRGEASSPTIVLKTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMTR 240
Query: 257 ATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRR 316
ATSPGYLRYPPPAVFV N QSGD VSLA+ELPL+S LPFL VPS S+DDSRID A+R
Sbjct: 241 ATSPGYLRYPPPAVFVTNGQSGDCVSLASELPLVS-LPFLFVPSFSLDDSRID---ANRL 296
Query: 317 ASSSNMQIEPSASLHLQSDSNVEQDGTVP---SMETFPVIPPGR----EGSVNDSFPNGI 369
+SS MQ+E S S+ LQ D+N D VP METFP +P EG VN+SFP+G+
Sbjct: 297 VTSSTMQVESSTSMQLQMDTNA-TDRYVPLVSPMETFPAVPSSSYTSAEGIVNNSFPSGM 355
Query: 370 ESGVSDYAVDAMDTDEMQPAGVSGQGNSMNLDTLG---GVMRGIPSHVSSQPAVTEFGQL 426
GVS+ DAM+TDEM P G + QG S +L+ LG M G+P++ S + T+FGQL
Sbjct: 356 GGGVSNTREDAMETDEMPPVGGNPQGKSAHLEMLGVGNSAMDGVPANTSIRQQSTDFGQL 415
Query: 427 QHLLPIRDRTFWELPFLQGWLMGQSQAGVPPML-LGGGNRDHSAQHMG-SSLMSHQSPYS 484
Q +LP RD T+WELPFLQGWLMGQSQAG P + L G+R+ SAQ++G SSL S+ S +
Sbjct: 416 QQILPSRDSTWWELPFLQGWLMGQSQAGGPSTVPLSSGSRERSAQYIGPSSLTSYLSTQN 475
Query: 485 VNAPVASLAVPGSIGLSGAPGRSGQH-HIPHSRFSESESREGAASSNILQDSTDTQPIVS 543
V A VASLA+PGS +SG GRSG I SRF ESRE A N+ + +D QPI +
Sbjct: 476 VEAAVASLAMPGSTSISGVSGRSGSRPRISRSRFFVPESRESMAPINMRHEGSDNQPIFN 535
Query: 544 RIQSELATSLAAAAAAELPCTVKLRVWSHDIKNPCAALTAERCRLTIPHAVLCSEMGAHF 603
RIQSE+ATSL AAAAAELPCTVKLRVWSHDIK+PCA L A++CRLTIPHAVLCSEMGAHF
Sbjct: 536 RIQSEIATSLEAAAAAELPCTVKLRVWSHDIKHPCAPLNADKCRLTIPHAVLCSEMGAHF 595
Query: 604 SPCGRYLAACVACMLPYTETDPGLQTLVHQEPGASTSPTRHPISAHQVMYELRIYSLEES 663
SPCGRYLAACVACMLP+ E DPGLQTLVHQ+ GA+TSPTRHPISAHQV+YELRIYSLEE+
Sbjct: 596 SPCGRYLAACVACMLPHMEADPGLQTLVHQDAGAATSPTRHPISAHQVVYELRIYSLEEA 655
Query: 664 TFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTSPIYTVLEV 723
TFGSVLVSRAIRAAHCLTSIQFSP SEHILLAYGRRHGSLLKSIVIDGETT+PIYTVLEV
Sbjct: 656 TFGSVLVSRAIRAAHCLTSIQFSPMSEHILLAYGRRHGSLLKSIVIDGETTTPIYTVLEV 715
Query: 724 YRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRILQYDGVHGANCSGPNYF 783
YRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLR+L+YDGVHG NC+ PN+F
Sbjct: 716 YRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLKYDGVHGVNCTRPNHF 775
Query: 784 TAENLTEVD 792
ENLTEV+
Sbjct: 776 PEENLTEVE 784
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585908|ref|XP_002533627.1| nucleotide binding protein, putative [Ricinus communis] gi|223526485|gb|EEF28756.1| nucleotide binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1095 bits (2832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/817 (71%), Positives = 651/817 (79%), Gaps = 36/817 (4%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCG- 59
MTG S PHD+NS++S S++ + N LL REI PKTK+VPKR+W DAS+ K+ G
Sbjct: 1 MTGRSLPHDRNSVQSNGSSNPLKSGGNALCLLVRREICPKTKHVPKRRWGDASRWKSNGG 60
Query: 60 ----------PSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRT 109
P RDAKRGL+SWVE ESLRHLSAKYCPLVPPPRSTIAAAFSPDGRT
Sbjct: 61 DNNNAISSSAPKCEPARDAKRGLISWVEEESLRHLSAKYCPLVPPPRSTIAAAFSPDGRT 120
Query: 110 LASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169
LASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL EILASGSLD+EVRLWDANT
Sbjct: 121 LASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLHPEILASGSLDYEVRLWDANT 180
Query: 170 SECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAV 229
SECIGS DFYRPIASIAFHAEGELLAVASGHKLY+W YN + EASSP IVLKTRRSLRAV
Sbjct: 181 SECIGSRDFYRPIASIAFHAEGELLAVASGHKLYVWHYNKRGEASSPAIVLKTRRSLRAV 240
Query: 230 HFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPL 289
HFHPHAAPF+LTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVAN QS D VSLAAE+PL
Sbjct: 241 HFHPHAAPFLLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANVQSSDRVSLAAEVPL 300
Query: 290 MSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNV--EQDGTVPSM 347
MS LPFL +PS S++D+R D A+R ASSS M S S LQ++ N + D + M
Sbjct: 301 MS-LPFLFMPSFSVNDTRPD---ANRHASSSIMHGGSSGSRRLQAEVNAGEKYDRLLSPM 356
Query: 348 ETFPVIP----PGREGSVNDSFPNGIESGVSDYAVDAMDTDEMQPAGVSGQGNSMNLDTL 403
ETFP + PG EGS+N P G S VSD VDAM+TDEMQP QGN + +T
Sbjct: 357 ETFPAVASSSHPGTEGSLNSLLPTGSAS-VSDTIVDAMETDEMQPIRGILQGNYRDPETS 415
Query: 404 GG---VMRGIPSHVSSQPAVTEFGQLQHLLPIRDRTFWELPFLQGWLMGQSQAGVPPML- 459
G M G+ ++S +P EFGQL LLP RD T+WEL FLQGWLMGQSQAGVP L
Sbjct: 416 RGGNSAMGGMSGNMSVRPRSIEFGQLHQLLPSRDPTWWELHFLQGWLMGQSQAGVPSTLP 475
Query: 460 LGGGNRDHSAQHMGSSLMSHQSPYSVNAPVASLAVPGSIGLSGAPGRSG-QHHIPHSRFS 518
L G+ ++ AQ+ SS S+ S +++ A +A+LA+P S LSG GR QH++ SRF
Sbjct: 476 LNVGSHEYPAQYTASSSTSYLSSHNMEAAMATLAMPASTSLSGVSGRFDLQHNV--SRFH 533
Query: 519 ESESREGAASSNILQ--DSTDTQPIVSRIQSELATSLAAAAAA-ELPCTVKLRVWSHDIK 575
S G + I++ DSTDTQP+ +RIQSE+ATSLAAAAAA ELPCTVKLRVW HDIK
Sbjct: 534 IS----GESMPPIIRQHDSTDTQPLFNRIQSEIATSLAAAAAAAELPCTVKLRVWPHDIK 589
Query: 576 NPCAALTAERCRLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPYTETDPGLQTLVHQEP 635
+PCA L AE+CRLTIPHAVLCSEMGAHFSPCGR+LAACVACMLP E DPGLQTLV Q+
Sbjct: 590 HPCAPLNAEKCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPNMEADPGLQTLVQQDS 649
Query: 636 GASTSPTRHPISAHQVMYELRIYSLEESTFGSVLVSRAIRAAHCLTSIQFSPTSEHILLA 695
GA+TSPTRHPISAHQVMYELRIYSLEE+TFGSVLVSRAIRAAHCLTSIQFSPTSEHILLA
Sbjct: 650 GAATSPTRHPISAHQVMYELRIYSLEEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLA 709
Query: 696 YGRRHGSLLKSIVIDGETTSPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGL 755
YGRRHGSLLKSI+IDGETTSP+YTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGL
Sbjct: 710 YGRRHGSLLKSIIIDGETTSPVYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGL 769
Query: 756 VYGTKEGKLRILQYDGVHGANCSGPNYFTAENLTEVD 792
VYGTKEGKLR+L+YDG HG NC+ PNY +NL EVD
Sbjct: 770 VYGTKEGKLRVLKYDGAHGGNCTTPNYCPEDNLAEVD 806
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572307|ref|XP_003554310.1| PREDICTED: uncharacterized protein LOC100817857 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1046 bits (2704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/782 (68%), Positives = 617/782 (78%), Gaps = 19/782 (2%)
Query: 27 NVSRLLAHREISPKTKYVPKRQWVD---ASKLKTC---GPSDSSVRDAKRGLVSWVEAES 80
NV LLA REISP+T+YV K W + ASK K+ P VRDA+RGL+SWVEAES
Sbjct: 7 NVFNLLARREISPRTRYVAKWHWGEPGEASKSKSIPYSRPKKEVVRDARRGLLSWVEAES 66
Query: 81 LRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP 140
LRHLSAKYCPLVPPPRSTIAAAFSPDG+ LASTHGDHTVKIIDC+TG+CLKVL GHRRTP
Sbjct: 67 LRHLSAKYCPLVPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTP 126
Query: 141 WVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGH 200
WVVRFHPL ILASGSLD EVRLWDANTSECI S FYRPIASIAFHA+GE++AVASGH
Sbjct: 127 WVVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGH 186
Query: 201 KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSP 260
KLYIW +N K EASSPI VLKT+RSLRAVHFHPHAAP++LTAEVNDLDSSDSSMT ATS
Sbjct: 187 KLYIWHHNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSL 246
Query: 261 GYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSS 320
GYL+YPPPAVFV N +H++L++ELP +S LPF ++P+ ++D+SR +LQHAS S
Sbjct: 247 GYLQYPPPAVFVTNIHPTEHINLSSELPYVS-LPFYVMPAYNVDESRAELQHASHDVVSG 305
Query: 321 NMQIEPSASLHLQSDSNVEQ--DGTVPSMETFPVIP----PGREGSVNDSFPNGIESGVS 374
+MQIE SA + LQ+D + + + TV M+TF +P G E + +F NG+ G+S
Sbjct: 306 SMQIESSAMVQLQADPSAAEHYETTVSPMDTFSEMPSSSQTGAEYPAHTAFSNGMGIGLS 365
Query: 375 DYAVDAMDTDEMQPAGVSGQGNSMNLDTLGGVMRGIPSHVSSQPAVTEFGQLQHLLPIRD 434
+ +D M+TDE +PA + GN N +L G++ G+ +++ +EFGQ P RD
Sbjct: 366 NLTMDGMETDETRPAEGNQHGNLTNTYSLNGMLHGLSRQTANRGVPSEFGQFHQFFPSRD 425
Query: 435 RTFWELPFLQGWLMGQSQAGVPPML-LGGGNRDHSAQHMGSS---LMSHQSPYSVNAPVA 490
+ WE+PFL GW+MGQSQ GVP ML G +RD+ +Q +GSS + S+ S +V+A +
Sbjct: 426 PSGWEIPFLHGWIMGQSQVGVPSMLPHMGASRDNLSQQIGSSSYIMASNHSTSNVDAAMP 485
Query: 491 SLAVPGSIGLSGAPGRSG-QHHIPHSRFSESESREGAASSNILQDSTDTQPIVSRIQSEL 549
S A+PGSI + G+ RSG ++H SR SES AAS N D D Q IVSRIQSEL
Sbjct: 486 SSAIPGSISIPGSSMRSGLRNHFSQSRVPVSESGNLAASINTPHDGFDMQTIVSRIQSEL 545
Query: 550 ATSLAAAAAAELPCTVKLRVWSHDIKNPCAALTAERCRLTIPHAVLCSEMGAHFSPCGRY 609
ATS+AA AA ELPCTVKLRVWSHDIKNPCA L A+RCRLT+PHAVLCSEMGAHFSPCGR+
Sbjct: 546 ATSVAATAA-ELPCTVKLRVWSHDIKNPCAPLNADRCRLTVPHAVLCSEMGAHFSPCGRF 604
Query: 610 LAACVACMLPYTETDPGLQTLVHQEPGASTSPTRHPISAHQVMYELRIYSLEESTFGSVL 669
LAACVACMLP+ E DPGLQT VHQ+PG +TSPTRHPISAHQVMYELRIYSLEE+TFGSVL
Sbjct: 605 LAACVACMLPHIEADPGLQTPVHQDPGVATSPTRHPISAHQVMYELRIYSLEEATFGSVL 664
Query: 670 VSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTSPIYTVLEVYRVSDM 729
SRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETT PIYTVLEVYRVSDM
Sbjct: 665 ASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDM 724
Query: 730 ELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRILQYDGVHGANCSGPNYFTAENLT 789
ELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLR+LQYDG H N +GP+YF E +
Sbjct: 725 ELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVNGAGPSYFPEETIV 784
Query: 790 EV 791
V
Sbjct: 785 GV 786
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505084|ref|XP_003521322.1| PREDICTED: uncharacterized protein LOC100794246 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1043 bits (2698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/780 (67%), Positives = 617/780 (79%), Gaps = 18/780 (2%)
Query: 28 VSRLLAHREISPKTKYVPKRQWVD---ASKLKTC---GPSDSSVRDAKRGLVSWVEAESL 81
V LLA REISP+++YV KR W + ASK K+ P + VRDA+RGL+SWVEAESL
Sbjct: 30 VFNLLARREISPRSRYVAKRHWGEPGEASKSKSSPYSHPKNEVVRDARRGLLSWVEAESL 89
Query: 82 RHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141
RHLSAKYCPL+PPPRSTIAAAFSPDG+ LASTHGDHTVKIIDC+TG+CLKVL GHRRTPW
Sbjct: 90 RHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPW 149
Query: 142 VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK 201
VVRFHPL ILASGSLD EVRLWDANTSECI S FYRPIASIAFHA+GE++AVASGHK
Sbjct: 150 VVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHK 209
Query: 202 LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPG 261
LYIW +N K EASSPI VLKT+RSLRAVHFHPHAAP++LTAEVNDL+SSDSSMT ATS G
Sbjct: 210 LYIWFHNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLESSDSSMTEATSLG 269
Query: 262 YLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSN 321
YL+YPPPAVFV N +H+SL++ELP +S LPF ++P+ ++D+SR +LQHAS S +
Sbjct: 270 YLQYPPPAVFVTNIHPTEHISLSSELPYVS-LPFYVMPAYTVDESRAELQHASHDVGSGS 328
Query: 322 MQIEPSASLHLQSD--SNVEQDGTVPSMETFPVIP----PGREGSVNDSFPNGIESGVSD 375
MQIE +A + L +D + + TV M+TF +P G E + +F NG+ G+S+
Sbjct: 329 MQIESAAMVQLHADPSAAAHYETTVSPMDTFSEMPSSSQTGAEYPAHTAFSNGMGIGLSN 388
Query: 376 YAVDAMDTDEMQPAGVSGQGNSMNLDTLGGVMRGIPSHVSSQPAVTEFGQLQHLLPIRDR 435
+D M+TDE +PA S GN N +L G++ G+ +++ ++EFGQ P RD
Sbjct: 389 LTMDGMETDETRPAEGSQHGNLTNTYSLNGMLHGLSRQTANRGVLSEFGQFHQFFPSRDP 448
Query: 436 TFWELPFLQGWLMGQSQAGVPPML-LGGGNRDHSAQHMGSSLMSHQSPYS--VNAPVASL 492
+ WE+PFL GW+MGQSQ GVP ML G +RD+ +QH+GSS + +P + V+A + S
Sbjct: 449 SGWEIPFLHGWIMGQSQVGVPSMLPHMGASRDNLSQHIGSSSIKASNPSTSNVDAAMPSS 508
Query: 493 AVPGSIGLSGAPGRSG-QHHIPHSRFSESESREGAASSNILQDSTDTQPIVSRIQSELAT 551
A+PGSI + G+ RSG ++H SR SES AAS N D D Q IVSRIQSELAT
Sbjct: 509 AIPGSISIPGSSMRSGLRNHFSQSRVPVSESGNLAASINAPHDGFDIQTIVSRIQSELAT 568
Query: 552 SLAAAAAAELPCTVKLRVWSHDIKNPCAALTAERCRLTIPHAVLCSEMGAHFSPCGRYLA 611
S+AA AA ELPCTVKLRVWSHDIKNPCA L A+RCRLTIPHAVLCSEMGAHFSPCGR+LA
Sbjct: 569 SVAATAA-ELPCTVKLRVWSHDIKNPCAPLNADRCRLTIPHAVLCSEMGAHFSPCGRFLA 627
Query: 612 ACVACMLPYTETDPGLQTLVHQEPGASTSPTRHPISAHQVMYELRIYSLEESTFGSVLVS 671
ACVAC+LP+ E DPGLQT VHQ+PG +TSPTRHPISAHQVMYELRIYSLEE+TFGSVL S
Sbjct: 628 ACVACVLPHIEADPGLQTPVHQDPGVATSPTRHPISAHQVMYELRIYSLEEATFGSVLAS 687
Query: 672 RAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTSPIYTVLEVYRVSDMEL 731
RAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETT PIYTVLEVY+VSDMEL
Sbjct: 688 RAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYKVSDMEL 747
Query: 732 VRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRILQYDGVHGANCSGPNYFTAENLTEV 791
VRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLR+LQYDG H N +GP+YF E + V
Sbjct: 748 VRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVNGTGPSYFPEETIVGV 807
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480074|ref|XP_002268829.2| PREDICTED: uncharacterized protein LOC100246400 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/790 (67%), Positives = 617/790 (78%), Gaps = 27/790 (3%)
Query: 25 ARNVSRLLAHREISPKTKYVPKRQWVDASKLKT---CGPSDSSVRDAKRGLVSWVEAESL 81
RNV +LLA REI P++K PKR W +S+ GP + RDA+RGL+SWVEA+SL
Sbjct: 10 GRNVLQLLAQREICPRSKQFPKRLWGGSSEQNAESFFGPKSEAARDARRGLISWVEADSL 69
Query: 82 RHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141
+HLSA+YCPL+PPPRSTIAAAFSPDG+TLASTHGDHTVKIIDC TG+CLKVL+GHRRTPW
Sbjct: 70 QHLSARYCPLMPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCHTGSCLKVLTGHRRTPW 129
Query: 142 VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK 201
VVRFHP+ EILASGSLDHEVR+WDANT+ECIGS DFYRPIASIAFHA+GELLAVASGHK
Sbjct: 130 VVRFHPVHPEILASGSLDHEVRIWDANTAECIGSRDFYRPIASIAFHAKGELLAVASGHK 189
Query: 202 LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPG 261
L++W Y+ + E SSP I+LKTRRSLRAVHFHPH AP +LTAEVNDLDSSDSSMTRATSPG
Sbjct: 190 LFVWHYSRRGETSSPTIILKTRRSLRAVHFHPHGAPVLLTAEVNDLDSSDSSMTRATSPG 249
Query: 262 YLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSN 321
YL YPPPAVF+AN S D + LA+EL L +SLPF +PS + DDSRIDL H R S+
Sbjct: 250 YLHYPPPAVFLANIHSSDRLKLASELHL-ASLPFSFIPSFARDDSRIDLYHTDRPTGSTR 308
Query: 322 MQIEPSASLHLQSDSNV--EQDGTVPSMETFPVIP----PGREGSVNDSFPNGIESGVSD 375
+Q+ S S+ Q+D+N + D V MET PV+P P EG+ + PNG+E+G+ D
Sbjct: 309 VQMGSSGSVQFQADANAAGQYDYMVFPMETSPVLPSCSNPSTEGTQINCVPNGMENGIPD 368
Query: 376 YAVDAMDTDEMQPAGVSGQGNSMNLDTLGGV---MRGIPSHVSSQPAVTEFGQLQHLLPI 432
+DAMD+ EMQP + +S NLDT G RG+P H+SS P EFG L LP
Sbjct: 369 PKMDAMDSTEMQPVEQNQHRSSANLDTFSGANSASRGVPGHISSLPESIEFGHLHQFLPC 428
Query: 433 RDRTFWELPFLQGWLMGQSQAGVPPML-LGGGNRDHSAQH--MGSSLMS-HQSPYSVNAP 488
R +WELPFLQGWLMGQSQAGV PML L G + +HS+Q+ MGS++++ S ++ P
Sbjct: 429 RGPKYWELPFLQGWLMGQSQAGVSPMLSLNGASHEHSSQNLGMGSAILNPDLSTSNIEVP 488
Query: 489 VASLAVPGSIGLSGAPGRSGQHHIPHSRFSES------ESREGAASSNILQDSTDTQPIV 542
V S A+ GSI L G GRSGQ RFS S ES E AAS NI + +DT PI+
Sbjct: 489 VISPAMAGSINLPGVAGRSGQQQ----RFSRSHLISVSESVEQAASINIAHEGSDTPPIM 544
Query: 543 SRIQSELATSLAAAAAAELPCTVKLRVWSHDIKNPCAALTAERCRLTIPHAVLCSEMGAH 602
SRIQSELA SLAAAAAAELPCTVKLR+WSHD+KNP A L AE+C L IPHAVLCSEMGAH
Sbjct: 545 SRIQSELAASLAAAAAAELPCTVKLRIWSHDLKNPSAVLNAEKCLLIIPHAVLCSEMGAH 604
Query: 603 FSPCGRYLAACVACMLPYTETDPGLQTLVHQEPGASTSPTRHPISAHQVMYELRIYSLEE 662
SPCGR+LAACVAC+LP+ E DPGLQT V GASTSPTRHP+SAH VMYELRIYSLEE
Sbjct: 605 LSPCGRFLAACVACVLPHLEADPGLQTQVQDAIGASTSPTRHPVSAHHVMYELRIYSLEE 664
Query: 663 STFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTSPIYTVLE 722
+TFG+VLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRH SLLKS+VIDGETT PIYT+LE
Sbjct: 665 ATFGTVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHSSLLKSLVIDGETTLPIYTILE 724
Query: 723 VYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRILQYDGVHGANCSGPNY 782
VYRVSDMELVRVLPSAEDEVNVACFHP GGGLVYGTKEGKLR+LQYD HG N +GPN
Sbjct: 725 VYRVSDMELVRVLPSAEDEVNVACFHPLPGGGLVYGTKEGKLRVLQYDVSHGMNSNGPNS 784
Query: 783 FTAENLTEVD 792
F ENL E++
Sbjct: 785 FLGENLAELE 794
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510311|ref|XP_003625444.1| Activating molecule in BECN1-regulated autophagy protein [Medicago truncatula] gi|355500459|gb|AES81662.1| Activating molecule in BECN1-regulated autophagy protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/776 (67%), Positives = 589/776 (75%), Gaps = 35/776 (4%)
Query: 27 NVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSA 86
NV LLA REISP+TK+V RDAKRGL+SWVEA+SLRHLSA
Sbjct: 18 NVFNLLARREISPRTKHV--------------------ARDAKRGLLSWVEADSLRHLSA 57
Query: 87 KYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH 146
KYCPL+P PRSTIAAAFSPDG+ LASTHGDHTVKIIDC+TG CLKVL GH RTPWVVRFH
Sbjct: 58 KYCPLLPAPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGRCLKVLIGHMRTPWVVRFH 117
Query: 147 PLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWP 206
PL +ILASGSLD EVRLWDANTSECI S FYRPIASIAFHA+GE++AVASGHKLYIW
Sbjct: 118 PLHPKILASGSLDQEVRLWDANTSECITSHHFYRPIASIAFHAKGEIIAVASGHKLYIWH 177
Query: 207 YNNKEEAS-SPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRY 265
Y+ K EAS SPI VLKTRRSLRAVHFHPHAAP++LTAEVNDLDSSDSSMT ATS GYL+Y
Sbjct: 178 YDKKGEASYSPIFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSIGYLQY 237
Query: 266 PPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIE 325
PPPAVFV N +HV+L++E P SLPF +VP ++D+SR +LQHAS A S +QIE
Sbjct: 238 PPPAVFVTNVHPTEHVTLSSE-PTNVSLPFFLVPPYTVDESRAELQHASHDAGSGRIQIE 296
Query: 326 PSASLHLQSDSNV--EQDGTVPSMETFPVIP----PGREGSVNDSFPNGIESGVSDYAVD 379
SA Q+D+N + D TV M+T IP G E + +F NG+ G+ + +D
Sbjct: 297 SSAVAQFQADTNSTEQHDTTVSPMDTVSEIPTNSQAGTEYPAHTAFSNGMGIGIGNLTMD 356
Query: 380 AMDTDEMQPAGVSGQGNSMNLDTLGGVMRGIPSHVSSQPAVTEFGQLQHLLPIRDRTFWE 439
M+TDE +PA S N + +L G++ G+ ++ E G + RD + WE
Sbjct: 357 GMETDETRPAEGSQHRNPTDASSLNGMLHGLSRQTANHGVHPEDGHP--FVSSRDPSGWE 414
Query: 440 LPFLQGWLMGQSQAGVPPMLLGGG-NRDHSAQHMGSSLMSHQSPYSVNAPVA--SLAVPG 496
LPFLQGW+MGQSQAG+P ML G +RD A + SS+M++ P S NA VA S A+ G
Sbjct: 415 LPFLQGWMMGQSQAGLPSMLPHTGVSRDTLAPQISSSVMANTLPTS-NADVAMPSSAMSG 473
Query: 497 SIGLSGAPGRSG-QHHIPHSRFSESESREGAASSNILQDSTDTQPIVSRIQSELATSLAA 555
SI + G+ RSG + H HSR SES AAS N D +D Q I+SRIQSELATS+AA
Sbjct: 474 SINIPGSSVRSGLRSHFSHSRTPVSESGNLAASINTPHDGSDIQTIMSRIQSELATSVAA 533
Query: 556 AAAAELPCTVKLRVWSHDIKNPCAALTAERCRLTIPHAVLCSEMGAHFSPCGRYLAACVA 615
AAA ELPCTVKLRVWSHDIKNPC+ L A+RCRL IPHAVLCSEMGAHFSPCGR+LAACVA
Sbjct: 534 AAATELPCTVKLRVWSHDIKNPCSPLNADRCRLIIPHAVLCSEMGAHFSPCGRFLAACVA 593
Query: 616 CMLPYTETDPGLQTLVHQEPGASTSPTRHPISAHQVMYELRIYSLEESTFGSVLVSRAIR 675
CMLP+ E DPGLQT VHQE G +TSPTRHPISAHQVMYELRIYSLEE+TFG VL SRAIR
Sbjct: 594 CMLPHIEADPGLQTPVHQESGIATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIR 653
Query: 676 AAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTSPIYTVLEVYRVSDMELVRVL 735
AAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETT PIYTVLEVYRVSDMELVRVL
Sbjct: 654 AAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVL 713
Query: 736 PSAEDEVNVACFHPFAGGGLVYGTKEGKLRILQYDGVHGANCSGPNYFTAENLTEV 791
PSAEDEVNVACFHPF GGGLVYGTKEGKLRIL YDG N +GP+YF E + V
Sbjct: 714 PSAEDEVNVACFHPFPGGGLVYGTKEGKLRILHYDGARPVNGTGPSYFPEETIVGV 769
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848636|ref|XP_002892199.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297338041|gb|EFH68458.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/812 (62%), Positives = 581/812 (71%), Gaps = 53/812 (6%)
Query: 1 MTGLSWPHDQNSLRSQ-PS-----NHLRRRARNVSRLLAHREISPKTKYVPKRQWVDA-- 52
MT W HDQ S RS PS N R+R R+V +LL REISPKTK+VP+++W ++
Sbjct: 2 MTESIWLHDQPSPRSMIPSPKPVANVHRQRCRSVFKLLVQREISPKTKFVPRKRWGESRW 61
Query: 53 SKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLAS 112
+CG + V + L+SWVEAESL++LSAKYCPLVPPPRSTIAAAFS DGRTLAS
Sbjct: 62 DADSSCGTTSEPVSEQGHNLISWVEAESLQYLSAKYCPLVPPPRSTIAAAFSSDGRTLAS 121
Query: 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172
THGDHTVKIIDC+TG CLK+L+GHRRTPWVVRFHP SEI+ASGSLDHEVRLW+A T+EC
Sbjct: 122 THGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTAEC 181
Query: 173 IGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFH 232
I + DFYRPIASIAFHA+GELLAVASGHKL+IW YN E SSP IVLKTRRSLRAVHFH
Sbjct: 182 IRTHDFYRPIASIAFHADGELLAVASGHKLHIWHYNKIGEDSSPAIVLKTRRSLRAVHFH 241
Query: 233 PHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSS 292
PH P +LTAEV D+DSSDS+MTRATSPGYLRYPPPA+F N QSG SLAAELPL+
Sbjct: 242 PHGVPLLLTAEVTDIDSSDSAMTRATSPGYLRYPPPAIFFTNTQSGSRTSLAAELPLVPL 301
Query: 293 LPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSD-SNVEQDGTVPSMETFP 351
L+ S S DD RI SS +A QS+ S+VE S P
Sbjct: 302 PYLLLP-SYSPDDPRIQY--------SSGTTGPRTAQTRFQSNQSSVELGSRTISPSPLP 352
Query: 352 VIPPGR--------EGSVNDSFPNGIESGVSDYAVDAMDTDEMQPAGVSGQGNSMNLDTL 403
+ + S ++F + S AVDAMD DE QPAG
Sbjct: 353 MATSADLSGSYHVPDNSAGNTFTAQAGARNSTTAVDAMDVDEAQPAG------------- 399
Query: 404 GGVMRGIPSHVSSQPAVTEFGQLQHLLPIRDRTFWELPFLQGWLMGQSQAGVPPMLLGGG 463
+PS VS+QP + EFGQLQ L RDR WELPFLQGWLM QSQAG + L G
Sbjct: 400 ---RNRVPSQVSNQPDLLEFGQLQQLFHFRDRGSWELPFLQGWLMAQSQAGANSVALPTG 456
Query: 464 NRDH--SAQHMGSSLMSHQSPYSVNAPVASLAVPGSIGLSGAPGR-SGQHHIPHSRFSES 520
+ H S + GSS S S+ A VASL +PG + L G R + I SRF S
Sbjct: 457 SSGHVNSTPYTGSS-----STASLEAGVASLEIPGGVNLYGVSARGDSRDRILQSRFVGS 511
Query: 521 ESREGAASSNILQDSTDTQPIVSRIQSELATSLAAAAAAELPCTVKLRVWSHDIKNPCAA 580
EG +S N + DTQP+V+RI SELATS+AAA ELPCTVKLRVWSHDIK+PCA
Sbjct: 512 GLAEGLSSRNTQHEGADTQPVVNRIPSELATSIAAA---ELPCTVKLRVWSHDIKDPCAI 568
Query: 581 LTAERCRLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPYTETDPGLQTLVHQEPGASTS 640
L +++CRLTI HAVLCSEMGAHFSPCG+YLAACVAC++P+TETDPGLQTLV Q+ G +TS
Sbjct: 569 LKSDKCRLTIHHAVLCSEMGAHFSPCGKYLAACVACVIPHTETDPGLQTLVQQDSGLATS 628
Query: 641 PTRHPISAHQVMYELRIYSLEESTFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRH 700
PTRHP++AHQVMYELR+YSLE+ +FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRH
Sbjct: 629 PTRHPVTAHQVMYELRVYSLEKESFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRH 688
Query: 701 GSLLKSIVIDGETTSPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTK 760
GSLLKSIV DGETTS +TVLE+YRVSDMELVRVLPS+EDEVNVACFHP GGGLVYGTK
Sbjct: 689 GSLLKSIVSDGETTSHFFTVLEIYRVSDMELVRVLPSSEDEVNVACFHPSPGGGLVYGTK 748
Query: 761 EGKLRILQYDGVHGANCSGPNYFTAENLTEVD 792
EGKLRI +Y+ +N + PN ENL EV+
Sbjct: 749 EGKLRIFRYNTAAASNLTAPNSSPDENLAEVE 780
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30678798|ref|NP_849587.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|332189541|gb|AEE27662.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/812 (61%), Positives = 581/812 (71%), Gaps = 48/812 (5%)
Query: 1 MTGLSWPHDQNSLRSQ-PS-----NHLRRRARNVSRLLAHREISPKTKYVPKRQWVDA-- 52
MT W +DQ+S RS PS N R+R R+V +LL REISP TK+VP+++W ++
Sbjct: 1 MTESIWLNDQSSPRSMIPSAKPVANVHRQRCRSVFKLLVQREISPNTKFVPRKRWGESRC 60
Query: 53 SKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLAS 112
+CG + VR+ L+SWVEAESL+HLSAKYCPLVPPPRSTIAAAFS DGRTLAS
Sbjct: 61 DADSSCGTTSEPVREQGLNLISWVEAESLQHLSAKYCPLVPPPRSTIAAAFSSDGRTLAS 120
Query: 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172
THGDHTVKIIDC+TG CLK+L+GHRRTPWVVRFHP SEI+ASGSLDHEVRLW+A T EC
Sbjct: 121 THGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTGEC 180
Query: 173 IGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFH 232
I + DFYRPIASIAFHA GELLAVASGHKL+IW YN + S+P IVLKTRRSLRAVHFH
Sbjct: 181 IRTHDFYRPIASIAFHAGGELLAVASGHKLHIWHYNKGGDDSAPAIVLKTRRSLRAVHFH 240
Query: 233 PHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSS 292
PH P +LTAEV D+DSSDS+MTR+TSPGYLRYPPPA+F N QSG SLAAELPL+
Sbjct: 241 PHGVPLLLTAEVTDIDSSDSAMTRSTSPGYLRYPPPAIFFTNTQSGSRTSLAAELPLVPL 300
Query: 293 LPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSD-SNVEQDGTVPSMETFP 351
L+ S S DD RI SS +A QS+ S+VE S P
Sbjct: 301 PYLLLP-SYSADDPRI--------LYSSGTTGPRNAQTRFQSNQSSVEHGSRTISPSPLP 351
Query: 352 VIPPGR--------EGSVNDSFPNGIESGVSDYAVDAMDTDEMQPAGVSGQGNSMNLDTL 403
+ + S +++F + S AVDAMD DE QP G
Sbjct: 352 MATSADLSGSYHVPDNSASNTFATQAGARNSTTAVDAMDVDEAQPVG------------- 398
Query: 404 GGVMRGIPSHVSSQPAVTEFGQLQHLLPIRDRTFWELPFLQGWLMGQSQAGVPPMLLGGG 463
+PS VSSQP + EFGQLQ L RDR WELPFLQGWLM QSQAG + L G
Sbjct: 399 ---RNRVPSQVSSQPDLLEFGQLQQLFHFRDRGSWELPFLQGWLMAQSQAGANSVALPTG 455
Query: 464 NRDH--SAQHMGSSLMSHQSPYSVNAPVASLAVPGSIGLSGAPGR-SGQHHIPHSRFSES 520
+ H S +MGSS SH S S+ A VASL +PG + L G R + I SRF+ S
Sbjct: 456 SSGHVNSTPYMGSSSASHSSTASLEAGVASLEIPGGVNLYGVSARGDSRDRILQSRFAGS 515
Query: 521 ESREGAASSNILQDSTDTQPIVSRIQSELATSLAAAAAAELPCTVKLRVWSHDIKNPCAA 580
EG +S N + D QP+V+RI SELA+S+AAA ELPCTVKLRVWSHDIK+PC+
Sbjct: 516 GLAEGRSSRNTQHEGADAQPVVNRIPSELASSIAAA---ELPCTVKLRVWSHDIKDPCSI 572
Query: 581 LTAERCRLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPYTETDPGLQTLVHQEPGASTS 640
L +++CRLTI HAVLCSEMGAHFSPCGRYLAACVAC++P+ ETDP LQTLV Q+ G +TS
Sbjct: 573 LKSDKCRLTIHHAVLCSEMGAHFSPCGRYLAACVACVIPHAETDPSLQTLVQQDSGLATS 632
Query: 641 PTRHPISAHQVMYELRIYSLEESTFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRH 700
PTRHP++AHQVMYELR+YSLE+ +FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRH
Sbjct: 633 PTRHPVTAHQVMYELRVYSLEKESFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRH 692
Query: 701 GSLLKSIVIDGETTSPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTK 760
GSLLKSIV DGETTS +TVLE+YRVSDMELVRVLPS+EDEVNVACFHP GGGLVYGTK
Sbjct: 693 GSLLKSIVSDGETTSHFFTVLEIYRVSDMELVRVLPSSEDEVNVACFHPSPGGGLVYGTK 752
Query: 761 EGKLRILQYDGVHGANCSGPNYFTAENLTEVD 792
EGKLRI +Y+ +N + PN ENL EV+
Sbjct: 753 EGKLRIFRYNTAAASNLTAPNSSPDENLAEVE 784
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18379250|ref|NP_563703.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|14334756|gb|AAK59556.1| unknown protein [Arabidopsis thaliana] gi|22136910|gb|AAM91799.1| unknown protein [Arabidopsis thaliana] gi|332189540|gb|AEE27661.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/811 (61%), Positives = 580/811 (71%), Gaps = 48/811 (5%)
Query: 1 MTGLSWPHDQNSLRSQ-PS-----NHLRRRARNVSRLLAHREISPKTKYVPKRQWVDA-- 52
MT W +DQ+S RS PS N R+R R+V +LL REISP TK+VP+++W ++
Sbjct: 1 MTESIWLNDQSSPRSMIPSAKPVANVHRQRCRSVFKLLVQREISPNTKFVPRKRWGESRC 60
Query: 53 SKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLAS 112
+CG + VR+ L+SWVEAESL+HLSAKYCPLVPPPRSTIAAAFS DGRTLAS
Sbjct: 61 DADSSCGTTSEPVREQGLNLISWVEAESLQHLSAKYCPLVPPPRSTIAAAFSSDGRTLAS 120
Query: 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172
THGDHTVKIIDC+TG CLK+L+GHRRTPWVVRFHP SEI+ASGSLDHEVRLW+A T EC
Sbjct: 121 THGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTGEC 180
Query: 173 IGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFH 232
I + DFYRPIASIAFHA GELLAVASGHKL+IW YN + S+P IVLKTRRSLRAVHFH
Sbjct: 181 IRTHDFYRPIASIAFHAGGELLAVASGHKLHIWHYNKGGDDSAPAIVLKTRRSLRAVHFH 240
Query: 233 PHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSS 292
PH P +LTAEV D+DSSDS+MTR+TSPGYLRYPPPA+F N QSG SLAAELPL+
Sbjct: 241 PHGVPLLLTAEVTDIDSSDSAMTRSTSPGYLRYPPPAIFFTNTQSGSRTSLAAELPLVPL 300
Query: 293 LPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSD-SNVEQDGTVPSMETFP 351
L+ S S DD RI SS +A QS+ S+VE S P
Sbjct: 301 PYLLLP-SYSADDPRI--------LYSSGTTGPRNAQTRFQSNQSSVEHGSRTISPSPLP 351
Query: 352 VIPPGR--------EGSVNDSFPNGIESGVSDYAVDAMDTDEMQPAGVSGQGNSMNLDTL 403
+ + S +++F + S AVDAMD DE QP G
Sbjct: 352 MATSADLSGSYHVPDNSASNTFATQAGARNSTTAVDAMDVDEAQPVG------------- 398
Query: 404 GGVMRGIPSHVSSQPAVTEFGQLQHLLPIRDRTFWELPFLQGWLMGQSQAGVPPMLLGGG 463
+PS VSSQP + EFGQLQ L RDR WELPFLQGWLM QSQAG + L G
Sbjct: 399 ---RNRVPSQVSSQPDLLEFGQLQQLFHFRDRGSWELPFLQGWLMAQSQAGANSVALPTG 455
Query: 464 NRDH--SAQHMGSSLMSHQSPYSVNAPVASLAVPGSIGLSGAPGR-SGQHHIPHSRFSES 520
+ H S +MGSS SH S S+ A VASL +PG + L G R + I SRF+ S
Sbjct: 456 SSGHVNSTPYMGSSSASHSSTASLEAGVASLEIPGGVNLYGVSARGDSRDRILQSRFAGS 515
Query: 521 ESREGAASSNILQDSTDTQPIVSRIQSELATSLAAAAAAELPCTVKLRVWSHDIKNPCAA 580
EG +S N + D QP+V+RI SELA+S+AAA ELPCTVKLRVWSHDIK+PC+
Sbjct: 516 GLAEGRSSRNTQHEGADAQPVVNRIPSELASSIAAA---ELPCTVKLRVWSHDIKDPCSI 572
Query: 581 LTAERCRLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPYTETDPGLQTLVHQEPGASTS 640
L +++CRLTI HAVLCSEMGAHFSPCGRYLAACVAC++P+ ETDP LQTLV Q+ G +TS
Sbjct: 573 LKSDKCRLTIHHAVLCSEMGAHFSPCGRYLAACVACVIPHAETDPSLQTLVQQDSGLATS 632
Query: 641 PTRHPISAHQVMYELRIYSLEESTFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRH 700
PTRHP++AHQVMYELR+YSLE+ +FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRH
Sbjct: 633 PTRHPVTAHQVMYELRVYSLEKESFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRH 692
Query: 701 GSLLKSIVIDGETTSPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTK 760
GSLLKSIV DGETTS +TVLE+YRVSDMELVRVLPS+EDEVNVACFHP GGGLVYGTK
Sbjct: 693 GSLLKSIVSDGETTSHFFTVLEIYRVSDMELVRVLPSSEDEVNVACFHPSPGGGLVYGTK 752
Query: 761 EGKLRILQYDGVHGANCSGPNYFTAENLTEV 791
EGKLRI +Y+ +N + PN ENL EV
Sbjct: 753 EGKLRIFRYNTAAASNLTAPNSSPDENLAEV 783
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088263|emb|CBI35771.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/785 (65%), Positives = 573/785 (72%), Gaps = 57/785 (7%)
Query: 17 PSNH--LRRRARNVSRLLAHREISPKTKYVPKRQWVDASKL--KTCGPSDSSVRDAKRGL 72
PS+H R NV RLLA RE++P+TK+ KR W DASK + GP + R+A+ GL
Sbjct: 29 PSHHPNSRHSGSNVYRLLARREVAPRTKHSLKRLWGDASKWHHNSIGPRCEAARNARCGL 88
Query: 73 VSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV 132
+SWVEAESLRHLSAKYCPL+PPPRSTIAAAFSPDG+TLASTHGDHTVKIIDCQ G+CLKV
Sbjct: 89 ISWVEAESLRHLSAKYCPLLPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQNGSCLKV 148
Query: 133 LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGE 192
LSGHRRTPWVVRFHPL EILASGSLDHEVRLWDA+T+ECIGS DFYRPIASIAFHA+GE
Sbjct: 149 LSGHRRTPWVVRFHPLYPEILASGSLDHEVRLWDASTAECIGSRDFYRPIASIAFHAQGE 208
Query: 193 LLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252
LLAVASGHKLYIW YN + E SSP IVLKTRRSLRAVHFHPHAAPF+LTAEVNDLDSSDS
Sbjct: 209 LLAVASGHKLYIWHYNRRGETSSPTIVLKTRRSLRAVHFHPHAAPFLLTAEVNDLDSSDS 268
Query: 253 SMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQH 312
SMT ATSPGYLRYPPP V++A+A S D SLA ELPLMS LPF I PS + DD RI LQH
Sbjct: 269 SMTLATSPGYLRYPPPTVYLADAHSSDRSSLADELPLMS-LPFFIWPSFARDDGRISLQH 327
Query: 313 ASRRASSSNMQ--IEPSASLHLQSDSNVE-QDGTVPSMETFPVIPPGREGSVNDSFPNGI 369
A S Q ++ S S+ L + S Q + S P E + +SF +
Sbjct: 328 TDGVAGPSIAQQRVDHSTSVRLLTYSTPSGQYELLLSPMEPSSSSPMPEETGTNSFLREM 387
Query: 370 ESGVSDYAVDAMDTDEMQPAGVSGQGNSMNLDTLGGVMRGIPSHVSSQPAVTEFGQLQHL 429
E+ V A+DAMDT E+QP S Q
Sbjct: 388 ENSVPQPAMDAMDTTEVQPEERSNQ----------------------------------F 413
Query: 430 LPIRDRTFWELPFLQGWLMGQSQAGVPPM--LLGGGNRDHSAQHMGSSLMSHQSPYSVNA 487
P D ++WELPFLQGWL+GQSQAG + L G G+ + SS ++P A
Sbjct: 414 FPFGDPSYWELPFLQGWLIGQSQAGQRTIRPLSGSGHEN------PSSFGETETP----A 463
Query: 488 PVASLAVPGSIGLSGAPGRSGQHHIPHSRFSESESREGAASSNILQDSTDTQPIVSRIQS 547
P+ S + SI S GRS H + + S EGA NI QD + QP+VSRIQS
Sbjct: 464 PMVSSVMSTSISQSRVTGRSSSRHRSSRSRAATGSAEGAFL-NIGQDESGLQPVVSRIQS 522
Query: 548 ELATSLAAAAAAELPCTVKLRVWSHDIKNPCAALTAERCRLTIPHAVLCSEMGAHFSPCG 607
ELATSLAAAAAAELPCTVKLR+W HDIK+PCA+L AERCRLTIPHAVLCSEMGAHFSPCG
Sbjct: 523 ELATSLAAAAAAELPCTVKLRIWPHDIKDPCASLDAERCRLTIPHAVLCSEMGAHFSPCG 582
Query: 608 RYLAACVACMLPYTETDPGLQTLVHQE-PGASTSPTRHPISAHQVMYELRIYSLEESTFG 666
R+LAACVACMLP+ E DPG Q +H GA+TSPTRHPISAHQVMYELRIYSLEE+TFG
Sbjct: 583 RFLAACVACMLPHLEADPGSQGQMHHGVTGAATSPTRHPISAHQVMYELRIYSLEEATFG 642
Query: 667 SVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTSPIYTVLEVYRV 726
VL SRAIRAAHCLTSIQFSPTSEH+LLAYGRRH SLLKSIVIDGETT PIYT+LEVYRV
Sbjct: 643 LVLASRAIRAAHCLTSIQFSPTSEHLLLAYGRRHNSLLKSIVIDGETTVPIYTILEVYRV 702
Query: 727 SDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRILQYDGVHGANCSGPNYFTAE 786
SDMELVRVLPSAEDEVNVACFHP GGGLVYGTKEGKLRILQYD HG N + + F E
Sbjct: 703 SDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQYDSSHGMNYTS-SCFLDE 761
Query: 787 NLTEV 791
N+ EV
Sbjct: 762 NMLEV 766
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 792 | ||||||
| TAIR|locus:2020285 | 793 | AT1G04140 "AT1G04140" [Arabido | 0.972 | 0.970 | 0.598 | 1.6e-244 | |
| UNIPROTKB|F1MPW0 | 1297 | F1MPW0 "Uncharacterized protei | 0.218 | 0.133 | 0.406 | 7.4e-26 | |
| UNIPROTKB|F1SI99 | 1297 | F1SI99 "Uncharacterized protei | 0.217 | 0.132 | 0.409 | 2.5e-25 | |
| UNIPROTKB|Q9C0C7 | 1298 | AMBRA1 "Activating molecule in | 0.217 | 0.132 | 0.409 | 2.6e-25 | |
| MGI|MGI:2443564 | 1300 | Ambra1 "autophagy/beclin 1 reg | 0.217 | 0.132 | 0.409 | 2.6e-25 | |
| UNIPROTKB|E1BQ96 | 1301 | AMBRA1 "Uncharacterized protei | 0.226 | 0.137 | 0.389 | 6.7e-25 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.178 | 0.420 | 0.299 | 3.5e-12 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.130 | 0.334 | 0.358 | 3.6e-11 | |
| UNIPROTKB|Q2KIG2 | 334 | WDR5 "WD repeat-containing pro | 0.130 | 0.308 | 0.358 | 5.1e-11 | |
| UNIPROTKB|P61964 | 334 | WDR5 "WD repeat-containing pro | 0.130 | 0.308 | 0.358 | 5.1e-11 |
| TAIR|locus:2020285 AT1G04140 "AT1G04140" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2356 (834.4 bits), Expect = 1.6e-244, P = 1.6e-244
Identities = 482/806 (59%), Positives = 566/806 (70%)
Query: 1 MTGLSWPHDQNSLRSQ-PS-----NHLRRRARNVSRLLAHREISPKTKYVPKRQWVDA-- 52
MT W +DQ+S RS PS N R+R R+V +LL REISP TK+VP+++W ++
Sbjct: 1 MTESIWLNDQSSPRSMIPSAKPVANVHRQRCRSVFKLLVQREISPNTKFVPRKRWGESRC 60
Query: 53 SKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLAS 112
+CG + VR+ L+SWVEAESL+HLSAKYCPLVPPPRSTIAAAFS DGRTLAS
Sbjct: 61 DADSSCGTTSEPVREQGLNLISWVEAESLQHLSAKYCPLVPPPRSTIAAAFSSDGRTLAS 120
Query: 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172
THGDHTVKIIDC+TG CLK+L+GHRRTPWVVRFHP SEI+ASGSLDHEVRLW+A T EC
Sbjct: 121 THGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTGEC 180
Query: 173 IGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFH 232
I + DFYRPIASIAFHA GELLAVASGHKL+IW YN + S+P IVLKTRRSLRAVHFH
Sbjct: 181 IRTHDFYRPIASIAFHAGGELLAVASGHKLHIWHYNKGGDDSAPAIVLKTRRSLRAVHFH 240
Query: 233 PHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSS 292
PH P +LTAEV D+DSSDS+MTR+TSPGYLRYPPPA+F N QSG SLAAELPL+
Sbjct: 241 PHGVPLLLTAEVTDIDSSDSAMTRSTSPGYLRYPPPAIFFTNTQSGSRTSLAAELPLVP- 299
Query: 293 LPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352
LP+L++PS S DD RI + ++ + + + S ++ S +P M T
Sbjct: 300 LPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQS-SVEHGSRTISPSPLP-MATSAD 357
Query: 353 IPPGR---EGSVNDSFPNGIESGVSDYAVDAMDTDEMQPAGVSGQGNSMNLDTLGGVMRG 409
+ + S +++F + S AVDAMD DE QP G
Sbjct: 358 LSGSYHVPDNSASNTFATQAGARNSTTAVDAMDVDEAQPVG----------------RNR 401
Query: 410 IPSHVSSQPAVTEFGQLQHLLPIRDRTFWELPFLQGWLMGQSQAGVPPMLLGGGNRDH-- 467
+PS VSSQP + EFGQLQ L RDR WELPFLQGWLM QSQAG + L G+ H
Sbjct: 402 VPSQVSSQPDLLEFGQLQQLFHFRDRGSWELPFLQGWLMAQSQAGANSVALPTGSSGHVN 461
Query: 468 SAQHMGSSLMSHQSPYSVNAPVASLAVPGSIGLSGAPGRS-GQHHIPHXXXXXXXXXXXX 526
S +MGSS SH S S+ A VASL +PG + L G R + I
Sbjct: 462 STPYMGSSSASHSSTASLEAGVASLEIPGGVNLYGVSARGDSRDRILQSRFAGSGLAEGR 521
Query: 527 XXXNILQDSTDTQPIVSRIQXXXXXXXXXXXXXXXPCTVKLRVWSHDIKNPCAALTAERC 586
N + D QP+V+RI PCTVKLRVWSHDIK+PC+ L +++C
Sbjct: 522 SSRNTQHEGADAQPVVNRIPSELASSIAAAEL---PCTVKLRVWSHDIKDPCSILKSDKC 578
Query: 587 RLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPYTETDPGLQTLVHQEPGASTSPTRHPI 646
RLTI HAVLCSEMGAHFSPCGRYLAACVAC++P+ ETDP LQTLV Q+ G +TSPTRHP+
Sbjct: 579 RLTIHHAVLCSEMGAHFSPCGRYLAACVACVIPHAETDPSLQTLVQQDSGLATSPTRHPV 638
Query: 647 SAHQVMYELRIYSLEESTFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKS 706
+AHQVMYELR+YSLE+ +FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKS
Sbjct: 639 TAHQVMYELRVYSLEKESFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKS 698
Query: 707 IVIDGETTSPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRI 766
IV DGETTS +TVLE+YRVSDMELVRVLPS+EDEVNVACFHP GGGLVYGTKEGKLRI
Sbjct: 699 IVSDGETTSHFFTVLEIYRVSDMELVRVLPSSEDEVNVACFHPSPGGGLVYGTKEGKLRI 758
Query: 767 LQYDGVHGANCSGPNYFTAENLTEVD 792
+Y+ +N + PN ENL EV+
Sbjct: 759 FRYNTAAASNLTAPNSSPDENLAEVE 784
|
|
| UNIPROTKB|F1MPW0 F1MPW0 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 311 (114.5 bits), Expect = 7.4e-26, Sum P(2) = 7.4e-26
Identities = 74/182 (40%), Positives = 100/182 (54%)
Query: 68 AKRGLVSWVEAES-LRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT 126
A+R L VE ++ K L PRST AFSPD LASTH +H + I + +T
Sbjct: 25 AQRLLQELVEDKTRCMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKT 84
Query: 127 GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIA 186
G C+ L GHRRTPW V FHP S ++ASG LD EVR+WD + D IAS+A
Sbjct: 85 GKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLA 144
Query: 187 FHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSL---RAVHFHPHAAPFVLTAE 243
FH +LL +A+ +++ W ++ +E P V+KT + R V F P ++LTA
Sbjct: 145 FHPTAQLLLIATASEIHFWDWSRRE----PFAVVKTASEMERVRLVRFDP-LGHYLLTAI 199
Query: 244 VN 245
VN
Sbjct: 200 VN 201
|
|
| UNIPROTKB|F1SI99 F1SI99 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 2.5e-25, Sum P(3) = 2.5e-25
Identities = 75/183 (40%), Positives = 102/183 (55%)
Query: 68 AKRGLVSWVEAESLRHLS--AKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ 125
A+R L VE + R + K L PRST AFSPD LASTH +H + I + +
Sbjct: 25 AQRLLQELVE-DKTRWMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVK 83
Query: 126 TGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASI 185
TG C+ L GHRRTPW V FHP S ++ASG LD EVR+WD + D IAS+
Sbjct: 84 TGKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASL 143
Query: 186 AFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSL---RAVHFHPHAAPFVLTA 242
AFH +LL +A+ ++++ W ++ +E P V+KT + R V F P ++LTA
Sbjct: 144 AFHPTAQLLLIATANEIHFWDWSRRE----PFAVVKTASEMERVRLVRFDP-LGHYLLTA 198
Query: 243 EVN 245
VN
Sbjct: 199 IVN 201
|
|
| UNIPROTKB|Q9C0C7 AMBRA1 "Activating molecule in BECN1-regulated autophagy protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 2.6e-25, Sum P(3) = 2.6e-25
Identities = 75/183 (40%), Positives = 102/183 (55%)
Query: 68 AKRGLVSWVEAESLRHLS--AKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ 125
A+R L VE + R + K L PRST AFSPD LASTH +H + I + +
Sbjct: 25 AQRLLQELVE-DKTRWMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVK 83
Query: 126 TGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASI 185
TG C+ L GHRRTPW V FHP S ++ASG LD EVR+WD + D IAS+
Sbjct: 84 TGKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASL 143
Query: 186 AFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSL---RAVHFHPHAAPFVLTA 242
AFH +LL +A+ ++++ W ++ +E P V+KT + R V F P ++LTA
Sbjct: 144 AFHPTAQLLLIATANEIHFWDWSRRE----PFAVVKTASEMERVRLVRFDP-LGHYLLTA 198
Query: 243 EVN 245
VN
Sbjct: 199 IVN 201
|
|
| MGI|MGI:2443564 Ambra1 "autophagy/beclin 1 regulator 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 2.6e-25, Sum P(3) = 2.6e-25
Identities = 75/183 (40%), Positives = 102/183 (55%)
Query: 68 AKRGLVSWVEAESLRHLS--AKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ 125
A+R L VE + R + K L PRST AFSPD LASTH +H + I + +
Sbjct: 25 AQRLLQELVE-DKTRWMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVK 83
Query: 126 TGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASI 185
TG C+ L GHRRTPW V FHP S ++ASG LD EVR+WD + D IAS+
Sbjct: 84 TGKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASL 143
Query: 186 AFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSL---RAVHFHPHAAPFVLTA 242
AFH +LL +A+ ++++ W ++ +E P V+KT + R V F P ++LTA
Sbjct: 144 AFHPTAQLLLIATANEIHFWDWSRRE----PFAVVKTASEMERVRLVRFDP-LGHYLLTA 198
Query: 243 EVN 245
VN
Sbjct: 199 IVN 201
|
|
| UNIPROTKB|E1BQ96 AMBRA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 74/190 (38%), Positives = 103/190 (54%)
Query: 68 AKRGLVSWVEAESLRHLS--AKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ 125
A+R L VE + R + K L PRST AFSPD +ASTH +H + I + +
Sbjct: 25 AQRLLQELVE-DKTRWMKWEGKKVELPDSPRSTFLLAFSPDRTLMASTHVNHNIYITEVK 83
Query: 126 TGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASI 185
TG C+ L GHRRTPW V FHP ++ASG LD EVR+WD + D IAS+
Sbjct: 84 TGKCVHSLVGHRRTPWCVTFHPTIPGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASL 143
Query: 186 AFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSL---RAVHFHPHAAPFVLTA 242
AFH +LL +A+ ++++ W ++ +E P V+KT + R V F P ++LTA
Sbjct: 144 AFHPTAQLLLIATANEIHFWDWSRRE----PFAVVKTASEMERVRLVRFDP-LGHYLLTA 198
Query: 243 EVNDLDSSDS 252
VN + S
Sbjct: 199 IVNPSNQQQS 208
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 183 (69.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 44/147 (29%), Positives = 75/147 (51%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D + + S D T+KI D ++G +K L GH+ + V F+P +S ++ SGS D
Sbjct: 95 AWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNP-QSNLIVSGSFDEN 153
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIV 219
VR+WD NT EC + P+ + F+ +G L+ S + IW + ++ I
Sbjct: 154 VRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNT--IS 211
Query: 220 LKTRRSLRAVHFHPHAAPFVLTAEVND 246
+ + + V F P+ FVL +++
Sbjct: 212 TEDGKEVSFVKFSPNGK-FVLAGTLDN 237
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 38/106 (35%), Positives = 59/106 (55%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 126
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVASGHKLY-IW 205
VR+WD T +C+ + + P++++ F+ +G L+ +S L IW
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
|
|
| UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 38/106 (35%), Positives = 59/106 (55%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 152
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVASGHKLY-IW 205
VR+WD T +C+ + + P++++ F+ +G L+ +S L IW
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
|
|
| UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 38/106 (35%), Positives = 59/106 (55%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 152
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVASGHKLY-IW 205
VR+WD T +C+ + + P++++ F+ +G L+ +S L IW
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 792 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-17 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-15 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 1e-18
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
AFSPDGR L+S+ D T+K+ D +TG CL L GH V F P +AS S D
Sbjct: 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGT 158
Query: 162 VRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASG 199
++LWD T +C+ + + S+AF +GE L +S
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
AFSPDG +AS+ D T+K+ D +TG C+ L+GH V F P E L S S D
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGT 200
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIV 219
++LWD +T +C+G+ + + S+AF +G LLA S + +W E +
Sbjct: 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE----CVQT 256
Query: 220 LK-TRRSLRAVHFHPHAAPFVLTAE 243
L S+ ++ + P + +
Sbjct: 257 LSGHTNSVTSLAWSPD-GKRLASGS 280
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 6e-16
Identities = 47/140 (33%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD 159
AFSPDG+ LA+ GD T+K+ D +TG L+ L GH V LASGS D
Sbjct: 14 CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSD 72
Query: 160 HEVRLWDANTSECI----GSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEAS 214
+RLWD T EC+ G ++S+AF +G +L+ +S K + +W E
Sbjct: 73 KTIRLWDLETGECVRTLTGHTS---YVSSVAFSPDGRILSSSSRDKTIKVW----DVETG 125
Query: 215 SPIIVLKT-RRSLRAVHFHP 233
+ L+ + +V F P
Sbjct: 126 KCLTTLRGHTDWVNSVAFSP 145
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD 159
+ AFSPDG L S+ D T+K+ D TG CL L GH V F P +LASGS D
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG-YLLASGSED 240
Query: 160 HEVRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVASG-HKLYIW 205
+R+WD T EC+ + + + S+A+ +G+ LA S + IW
Sbjct: 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.0 bits (193), Expect = 2e-15
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 91 LVPPPRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLR 149
L S + AFSPDG+ LAS D T+K+ D +TG L L+GH + F P
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210
Query: 150 SEILASGSLDHEVRLWDANTSECIGSCDFYRPIASI-AFHAEGELLAVASG-HKLYIWPY 207
++ASGS D +RLWD +T + + S + + +F +G LLA S + +W
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW-- 268
Query: 208 NNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL-----TAEVNDLDSSDSSMTR 256
+ + +S + S+ +V F P T + DL++ +
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD 159
+ AFSPDG LAS D T+++ D +TG C++ LSGH + + + P LASGS D
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK-RLASGSAD 282
Query: 160 HEVRLWD 166
+R+WD
Sbjct: 283 GTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (137), Expect = 2e-08
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 103 FSPDGRTLAS--THGDHTVKIIDCQT-GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD 159
SPDG ++ + D TVK+ D T G ++ L GH + + F P + + SLD
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177
Query: 160 HEVRLWDANTSECIGS-CDFYRPIASIAFHAEGELLAVASGH--KLYIWPYNNKEEASSP 216
++LWD T + + + P++S+AF +G LL + + +W + + S
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237
Query: 217 I 217
+
Sbjct: 238 L 238
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 129 CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS-CDFYRPIASIAF 187
+ L GH V F P ++LA+GS D +++WD T E + + P+ +A
Sbjct: 1 LRRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 188 HAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRS-LRAVHFHPH 234
A+G LA S + +W E + L S + +V F P
Sbjct: 60 SADGTYLASGSSDKTIRLWDLETGEC----VRTLTGHTSYVSSVAFSPD 104
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.8 bits (125), Expect = 5e-07
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASG 156
+ ++ +FSPDGR ++S D TV++ D TG+ L+ L GH + F P + LASG
Sbjct: 372 NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLASG 430
Query: 157 SLDHEVRLWDANTSECI 173
S D+ +RLWD TS
Sbjct: 431 SSDNTIRLWDLKTSLKS 447
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-06
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 126 TGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166
+G LK L GH V F P + LASGS D ++LWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-05
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 127 GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166
G L+ L GH V F P +LASGS D VR+WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.1 bits (105), Expect = 1e-04
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 7/147 (4%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGN-CLKVLSGHRRTPW--VVRFHPLRSEILASGS- 157
AFSPDG L S D T+K+ D G +K L G + + P + IL + S
Sbjct: 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131
Query: 158 LDHEVRLWDANTSECIGSC--DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASS 215
LD V+LWD +T + + S+AF +G+LLA S I ++ +
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191
Query: 216 PIIVLKTRRSLRAVHFHPHAAPFVLTA 242
+ T + ++ F P + +
Sbjct: 192 STLAGHT-DPVSSLAFSPDGGLLIASG 217
|
Length = 466 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 110 LASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169
+AS++ + V++ D + + H + W + + +LASGS D V+LW N
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607
Query: 170 SECIGSCDFYRPIASIAFHAE-GELLAVASG-HKLYIWPYNN 209
IG+ I + F +E G LA S HK+Y + N
Sbjct: 608 GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRN 649
|
Length = 793 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 792 | |||
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.96 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.94 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.94 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.93 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.93 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.92 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.92 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.91 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.91 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.9 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.9 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.89 | |
| PTZ00421 | 493 | coronin; Provisional | 99.88 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.88 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.88 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.88 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.87 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.87 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.87 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.86 | |
| PTZ00420 | 568 | coronin; Provisional | 99.86 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.86 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.85 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.84 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.84 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.84 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.83 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.83 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.82 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.82 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.82 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.82 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.81 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.81 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.81 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.81 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.81 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.81 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.8 | |
| PTZ00421 | 493 | coronin; Provisional | 99.8 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.8 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.8 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.79 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.79 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.77 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.77 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.76 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.76 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.76 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.76 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.76 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.75 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.75 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.75 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.75 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.75 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.75 | |
| PTZ00420 | 568 | coronin; Provisional | 99.74 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.73 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.72 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.72 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.71 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.71 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.71 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.7 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.7 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.69 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.69 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.69 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.69 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.68 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.68 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.67 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.67 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.66 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.66 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.66 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.66 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.66 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.66 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.62 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.62 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.62 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.61 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.61 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.61 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.61 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.61 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.6 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.6 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.6 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.58 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.58 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.56 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.55 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.54 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.53 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.53 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.53 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.52 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.52 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.52 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.52 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.51 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.5 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.5 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.49 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.49 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.47 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.47 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.43 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.43 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.43 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.43 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.42 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.41 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.41 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.4 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.4 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.4 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.38 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.38 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.37 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.36 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.36 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.36 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.35 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.34 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.32 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.31 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.3 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.29 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.28 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.28 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.27 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.26 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.26 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.26 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.25 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.24 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.23 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.22 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.22 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.21 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.2 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.2 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.19 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.19 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.19 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.19 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.18 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.18 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.18 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.17 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.17 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.17 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.17 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.15 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.14 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.14 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.14 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.13 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.1 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.1 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.1 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.1 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.1 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.1 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.09 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.08 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.08 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.07 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.06 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.05 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.04 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.0 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.0 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.99 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.97 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.97 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.94 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.94 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.94 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.92 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.89 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.87 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.86 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.84 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.84 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.81 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.8 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.8 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.76 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.74 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.74 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.74 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.7 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.65 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.64 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.64 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.62 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.62 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.61 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.59 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.59 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.58 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.57 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.55 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.55 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.54 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.48 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.47 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.45 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.44 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.37 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.33 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.32 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.32 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.29 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.27 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.23 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.23 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.14 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.13 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.11 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.11 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.11 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.09 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.09 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.08 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.03 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.02 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.99 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.95 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.95 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.91 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.9 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.82 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.76 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.74 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.73 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.67 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.67 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.66 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.66 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.64 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.63 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.6 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.58 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.55 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.51 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.5 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.48 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.45 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.43 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.4 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.39 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.36 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.35 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.35 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.33 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.32 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.3 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.28 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.28 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.24 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.2 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.2 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.14 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.14 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.13 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.12 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.1 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.06 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.04 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.96 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.87 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.75 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.7 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 96.69 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.57 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.57 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.56 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.52 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.52 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.48 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.47 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.45 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.44 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 96.36 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.35 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.99 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.78 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 95.76 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.74 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.7 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.67 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.65 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.56 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.51 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.47 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.27 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.09 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.07 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.05 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.04 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.03 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 94.96 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.96 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.87 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.82 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 94.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.72 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.56 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.48 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 94.34 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 94.31 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.14 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 94.13 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 93.96 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 93.94 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.88 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 93.79 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.54 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 93.19 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.19 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 93.17 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.14 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 92.97 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 92.93 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 92.78 | |
| PRK10115 | 686 | protease 2; Provisional | 92.75 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 92.73 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 92.58 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.57 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 91.7 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 91.7 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 91.57 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 91.53 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 91.44 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.22 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 90.78 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 90.37 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 90.21 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 90.18 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 88.67 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 88.43 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 88.1 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 87.84 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 87.78 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 87.66 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 87.07 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 86.55 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 86.55 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 84.98 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 84.59 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 83.62 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 83.55 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 83.33 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 83.3 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 83.07 | |
| PRK10115 | 686 | protease 2; Provisional | 82.87 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 82.6 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 82.55 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 82.28 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 82.11 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 80.89 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 80.75 |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=268.36 Aligned_cols=256 Identities=20% Similarity=0.239 Sum_probs=216.9
Q ss_pred CCCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCC
Q 036953 21 LRRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVP 93 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~g 93 (792)
.-++..+||+.....+++ .++..+..+.|+|.. .+..+++++.|+++++|+.... .+.+
T Consensus 194 swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~--------------~~~~lat~s~Dgtvklw~~~~e~~l~~l~g 259 (459)
T KOG0272|consen 194 SWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD--------------SDLNLATASADGTVKLWKLSQETPLQDLEG 259 (459)
T ss_pred ecCCceeEeecCCcceeEEEeccccceeeEEEccCC--------------CccceeeeccCCceeeeccCCCcchhhhhc
Confidence 356677888776654444 566778888888873 3457788899999999998764 6789
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
|...|..++|+|+|++|++++.|.+-++||+.++..+....||...|.+++|++ |+.+++||+.|..-++||+++++++
T Consensus 260 H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~i 338 (459)
T KOG0272|consen 260 HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCI 338 (459)
T ss_pred chhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEE
Confidence 999999999999999999999999999999999999988899999999999999 9999999999999999999999999
Q ss_pred EEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 174 GSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 174 ~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
..+ +|..+|.+|+|+|+|..|++|+ |+.++|||++..+... .+..|..-|+.|+|+|++.+++++++.+
T Consensus 339 m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---~ipAH~nlVS~Vk~~p~~g~fL~TasyD------ 409 (459)
T KOG0272|consen 339 MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---TIPAHSNLVSQVKYSPQEGYFLVTASYD------ 409 (459)
T ss_pred EEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---ecccccchhhheEecccCCeEEEEcccC------
Confidence 988 5999999999999999999999 5569999999888643 6778999999999999666666666533
Q ss_pred CceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccccccccc
Q 036953 252 SSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLH 331 (792)
Q Consensus 252 ~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q 331 (792)
...++|...+..+ +..+.||...|+++++++||.+|+
T Consensus 410 ----------------~t~kiWs~~~~~~------~ksLaGHe~kV~s~Dis~d~~~i~--------------------- 446 (459)
T KOG0272|consen 410 ----------------NTVKIWSTRTWSP------LKSLAGHEGKVISLDISPDSQAIA--------------------- 446 (459)
T ss_pred ----------------cceeeecCCCccc------chhhcCCccceEEEEeccCCceEE---------------------
Confidence 2344454444333 234667999999999999999999
Q ss_pred ccCCCCCcccccccccc
Q 036953 332 LQSDSNVEQDGTVPSME 348 (792)
Q Consensus 332 ~~~~~sgs~D~tv~p~~ 348 (792)
+++||+|+..|.
T Consensus 447 -----t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 447 -----TSSFDRTIKLWR 458 (459)
T ss_pred -----EeccCceeeecc
Confidence 899999999885
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-26 Score=242.52 Aligned_cols=256 Identities=20% Similarity=0.250 Sum_probs=212.9
Q ss_pred CCCceEeeeccccee---eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-----CcCC
Q 036953 22 RRRARNVSRLLAHRE---ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----PLVP 93 (792)
Q Consensus 22 ~s~~r~V~~l~~~re---ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----~L~g 93 (792)
.....++|+...+-. .+.+..-|.+++|+||++.+++| +.+++|++||.+++ .|.+
T Consensus 135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG----------------~~dg~I~lwdpktg~~~g~~l~g 198 (480)
T KOG0271|consen 135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASG----------------SKDGSIRLWDPKTGQQIGRALRG 198 (480)
T ss_pred CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcc----------------ccCCeEEEecCCCCCcccccccC
Confidence 344678898766533 33566689999999999877666 68899999998876 5789
Q ss_pred CCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 94 PPRSTIAAAFSP-----DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 94 H~~~V~sLafSP-----DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
|.+.|++++|-| ..++|++++.||.|+|||+..+.++..+.+|+.+|+|++|-- ..+|++++.|++||+|+..
T Consensus 199 H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 199 HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRAL 276 (480)
T ss_pred cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEcc
Confidence 999999999987 567999999999999999999999999999999999999973 6899999999999999999
Q ss_pred CCcEEEEe-ccCCCeeEEEEc-----------CCCc-------------------------EEEEEcCCe-EEEEECCCC
Q 036953 169 TSECIGSC-DFYRPIASIAFH-----------AEGE-------------------------LLAVASGHK-LYIWPYNNK 210 (792)
Q Consensus 169 tg~~v~t~-~h~s~V~sVafS-----------pdG~-------------------------~LasgSdd~-V~IWDlrt~ 210 (792)
.|.+...+ +|...|+.++.+ +.++ .|++|+|+. +.+|+-...
T Consensus 277 dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~ 356 (480)
T KOG0271|consen 277 DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS 356 (480)
T ss_pred chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc
Confidence 99998888 588889888765 3343 499999765 999998666
Q ss_pred CcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcc
Q 036953 211 EEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLM 290 (792)
Q Consensus 211 ~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l 290 (792)
+.. .....+|..-|+.|.|+||++++++++-+ ..+.+|.+.+|.++..++
T Consensus 357 kkp--i~rmtgHq~lVn~V~fSPd~r~IASaSFD-----------------------kSVkLW~g~tGk~lasfR----- 406 (480)
T KOG0271|consen 357 KKP--ITRMTGHQALVNHVSFSPDGRYIASASFD-----------------------KSVKLWDGRTGKFLASFR----- 406 (480)
T ss_pred ccc--hhhhhchhhheeeEEECCCccEEEEeecc-----------------------cceeeeeCCCcchhhhhh-----
Confidence 532 23456789999999999999966655533 367788888887755554
Q ss_pred cCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 291 SSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 291 ~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
||..+|+.++++.|.|++| ++|.|.|+.-|++-.-
T Consensus 407 -GHv~~VYqvawsaDsRLlV--------------------------S~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 407 -GHVAAVYQVAWSADSRLLV--------------------------SGSKDSTLKVWDVRTK 441 (480)
T ss_pred -hccceeEEEEeccCccEEE--------------------------EcCCCceEEEEEeeee
Confidence 5999999999999999999 8999999999997654
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=237.38 Aligned_cols=266 Identities=17% Similarity=0.204 Sum_probs=198.8
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
+...+.++.|+|+++ .|++++-|.++|+||..+. +.++|...|.|++|+|||+.||+|+.
T Consensus 114 H~e~Vl~~~fsp~g~----------------~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGS----------------RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred CCCcEEEEEecCCCc----------------eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc
Confidence 444566666766655 4555578899999999876 46899999999999999999999999
Q ss_pred CCeEEEEECCCCcEE-EEecCCCCCcEEEEEcc----CCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcC
Q 036953 116 DHTVKIIDCQTGNCL-KVLSGHRRTPWVVRFHP----LRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHA 189 (792)
Q Consensus 116 DGtVrIWDl~tgk~v-~~L~gH~~~VtsVafSP----~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSp 189 (792)
||+|++||..+|+++ ..|.+|+..|++++|.| ....+|++++.||+|+|||+..++++..+ +|..+|+|+.|--
T Consensus 178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG 257 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG 257 (480)
T ss_pred CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC
Confidence 999999999988754 67899999999999987 24678999999999999999999999887 6999999999964
Q ss_pred CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC-CC--ceeeecCCCcccC
Q 036953 190 EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS-DS--SMTRATSPGYLRY 265 (792)
Q Consensus 190 dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~-d~--~~~l~t~sg~~~~ 265 (792)
+ .+|++++ |.+|++|+...+.... .+.+|...|+.++++-+. .+-++........ .. .........|...
T Consensus 258 ~-gliySgS~DrtIkvw~a~dG~~~r---~lkGHahwvN~lalsTdy--~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 258 E-GLIYSGSQDRTIKVWRALDGKLCR---ELKGHAHWVNHLALSTDY--VLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred C-ceEEecCCCceEEEEEccchhHHH---hhcccchheeeeeccchh--hhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 4 4888888 5559999999887544 567799999999998543 3333332211111 00 0000111112111
Q ss_pred -CCCceEEEEecCCCEEEEee------ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCC
Q 036953 266 -PPPAVFVANAQSGDHVSLAA------ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNV 338 (792)
Q Consensus 266 -p~~~~~l~~~ssG~~~~l~s------~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sg 338 (792)
......++.++++-.+.++. ....+.+|...|..|.|||||++|+ ++
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA--------------------------Sa 385 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA--------------------------SA 385 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE--------------------------Ee
Confidence 11223444445544455544 2235678999999999999999999 89
Q ss_pred ccccccccccccCCC
Q 036953 339 EQDGTVPSMETFPVI 353 (792)
Q Consensus 339 s~D~tv~p~~~~~~~ 353 (792)
|+|+.|..|+--.|.
T Consensus 386 SFDkSVkLW~g~tGk 400 (480)
T KOG0271|consen 386 SFDKSVKLWDGRTGK 400 (480)
T ss_pred ecccceeeeeCCCcc
Confidence 999999999977773
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=218.78 Aligned_cols=264 Identities=15% Similarity=0.197 Sum_probs=213.5
Q ss_pred CCCCCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC---CCeEEEEeccCCCcC
Q 036953 19 NHLRRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE---AESLRHLSAKYCPLV 92 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~---d~sIrvWd~~t~~L~ 92 (792)
+....+..-||+.-+..+.. .....|...+++|+++.++||.++... .++.... ++.+++ ...+.
T Consensus 72 SaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C-----siy~ls~~d~~g~~~v----~r~l~ 142 (343)
T KOG0286|consen 72 SASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC-----SIYPLSTRDAEGNVRV----SRELA 142 (343)
T ss_pred eeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee-----EEEeccccccccccee----eeeec
Confidence 34566778899886654443 566789999999999999999855444 5555542 222322 23578
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
+|...+.|+.|-. ..+|++++.|.++.+||+.+++.+..|.+|.+.|.++.++|.+++.+++|+-|++.+|||++.+.+
T Consensus 143 gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c 221 (343)
T KOG0286|consen 143 GHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC 221 (343)
T ss_pred CccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce
Confidence 9999999999986 667999999999999999999999999999999999999998999999999999999999999999
Q ss_pred EEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 173 IGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 173 v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
+++| .|++.|+++.|.|+|.-|++|+++. .++||++..++.. ......-...|++|+|+..|+.|+++..++.
T Consensus 222 ~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a-~ys~~~~~~gitSv~FS~SGRlLfagy~d~~---- 296 (343)
T KOG0286|consen 222 VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELA-VYSHDSIICGITSVAFSKSGRLLFAGYDDFT---- 296 (343)
T ss_pred eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEe-eeccCcccCCceeEEEcccccEEEeeecCCc----
Confidence 9999 5999999999999999999999766 9999999987653 1222223568999999999997776654543
Q ss_pred CCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccc
Q 036953 251 DSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASL 330 (792)
Q Consensus 251 d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~ 330 (792)
..+|+.-.++..... .||..+|.++.++|||.-+.
T Consensus 297 -------------------c~vWDtlk~e~vg~L------~GHeNRvScl~~s~DG~av~-------------------- 331 (343)
T KOG0286|consen 297 -------------------CNVWDTLKGERVGVL------AGHENRVSCLGVSPDGMAVA-------------------- 331 (343)
T ss_pred -------------------eeEeeccccceEEEe------eccCCeeEEEEECCCCcEEE--------------------
Confidence 444554455443333 35999999999999999999
Q ss_pred cccCCCCCcccccccccc
Q 036953 331 HLQSDSNVEQDGTVPSME 348 (792)
Q Consensus 331 q~~~~~sgs~D~tv~p~~ 348 (792)
+||.|.++.-|.
T Consensus 332 ------TgSWDs~lriW~ 343 (343)
T KOG0286|consen 332 ------TGSWDSTLRIWA 343 (343)
T ss_pred ------ecchhHheeecC
Confidence 899999998873
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-25 Score=236.91 Aligned_cols=234 Identities=23% Similarity=0.309 Sum_probs=205.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC-CCCEEEEEeCCCeEEEEECCCC
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL-RSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~-dg~lLaSgS~DgtVrLWDl~tg 170 (792)
.+-.++|..+.|+.|++.|++|+.+|.++||+..+...+.+|.+|...|.++.|+|. ++..++||+.||++++|++.+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 356788999999999999999999999999999999999999999999999999995 3679999999999999999998
Q ss_pred cEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----
Q 036953 171 ECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE----- 243 (792)
Q Consensus 171 ~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s----- 243 (792)
.++..+ +|...|..++|||+|++|++++ |.+.++||++++.+. ....+|...|.+++|+|||. ++++++
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El---L~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~ 327 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL---LLQEGHSKGVFSIAFQPDGS-LAATGGLDSLG 327 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhh---HhhcccccccceeEecCCCc-eeeccCccchh
Confidence 888888 5889999999999999999999 555999999999864 35678999999999999999 666665
Q ss_pred -eCccccCCCceeeecCCC---cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECC-CCcEEEEcc
Q 036953 244 -VNDLDSSDSSMTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSID-DSRIDLQHA 313 (792)
Q Consensus 244 -~~dLrs~d~~~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~Sp-DGr~lv~~~ 313 (792)
+||++++...+.+..... .+.|.|....++..++++..+++. .+.++..|...|..|.|+| .|++|+
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~--- 404 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLV--- 404 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEE---
Confidence 899999999888876554 456788888888877776655554 6778899999999999998 688999
Q ss_pred ccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 314 SRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 314 ~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
|++||.|+.-|-.-...|.
T Consensus 405 -----------------------TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 405 -----------------------TASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred -----------------------EcccCcceeeecCCCcccc
Confidence 9999999999987777665
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-24 Score=216.23 Aligned_cols=256 Identities=16% Similarity=0.226 Sum_probs=206.3
Q ss_pred CCcEEEEEeCCCeEEEEeccCCCc---CCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc--EEEEecCCCCCcE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCPL---VPPP-RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPW 141 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~L---~gH~-~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk--~v~~L~gH~~~Vt 141 (792)
....|++.+.|.+||.|...++.. ..|. ..|+.+...||++.|++++.. .|++||+++++ ++.+|.+|.+.|+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence 445788999999999999998842 3454 469999999999999998876 59999999875 6899999999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEe
Q 036953 142 VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
.+.|.. ++++++||++||++||||++...+.+.+.+.++|+++..+|+...|+++. ++.|++||+....... ....
T Consensus 88 aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~--~liP 164 (311)
T KOG0315|consen 88 AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH--ELIP 164 (311)
T ss_pred EEEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--ccCC
Confidence 999999 99999999999999999999999999999999999999999999999988 4559999998775433 1223
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe-----eCccccCCCc------eeeecCCCc---ccCCCCceEEEEecCCCEEEEeec
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSSDSS------MTRATSPGY---LRYPPPAVFVANAQSGDHVSLAAE 286 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~d~~------~~l~t~sg~---~~~p~~~~~l~~~ssG~~~~l~s~ 286 (792)
.....|.++...|||..+++... .|++-..... .+++...+| ..+.+....++..++++..+++..
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 34578999999999998877544 5655432222 223333443 335667777777777777666552
Q ss_pred ------cCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 287 ------LPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 287 ------l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
...+++|..+||+++||.||+||+ +++.|.++.+|+...++
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~Ylv--------------------------Tassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLV--------------------------TASSDHTARLWDLSAGK 291 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEE--------------------------ecCCCCceeecccccCc
Confidence 234678999999999999999999 99999999999987774
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=247.58 Aligned_cols=249 Identities=22% Similarity=0.324 Sum_probs=209.8
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCC--------e------------EEEEeccC----CCcCCCC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAE--------S------------LRHLSAKY----CPLVPPP 95 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~--------s------------IrvWd~~t----~~L~gH~ 95 (792)
..+-+++..++++++++++|..++.+ .+|+....+ . +.+.|... ..+.+|.
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i-----~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSV-----RVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEE-----EEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 34568899999999999999866666 555544211 1 11122111 1478999
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
++|+.+.|+|+.++|++++.|++|++|.+.+..++..++||..+|+.+.|+| .+-+++|++.|++-++|.....++++.
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhh
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999988
Q ss_pred e-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 176 C-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 176 ~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
+ +|.+.|.|+.|||+..|+++||.++ |++||..++...+ .+.+|.++|.+++|+|+|++|++++.+.
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~GH~~~V~al~~Sp~Gr~LaSg~ed~-------- 599 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTGHKGPVTALAFSPCGRYLASGDEDG-------- 599 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEE---EecCCCCceEEEEEcCCCceEeecccCC--------
Confidence 8 6999999999999999999999655 9999999998754 6678999999999999999887776544
Q ss_pred eeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccccccccccc
Q 036953 254 MTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQ 333 (792)
Q Consensus 254 ~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~ 333 (792)
.+.+|+...|..+. .+.+|.+.|.++.||.||..|+
T Consensus 600 ---------------~I~iWDl~~~~~v~------~l~~Ht~ti~SlsFS~dg~vLa----------------------- 635 (707)
T KOG0263|consen 600 ---------------LIKIWDLANGSLVK------QLKGHTGTIYSLSFSRDGNVLA----------------------- 635 (707)
T ss_pred ---------------cEEEEEcCCCcchh------hhhcccCceeEEEEecCCCEEE-----------------------
Confidence 56778777765533 3456999999999999999999
Q ss_pred CCCCCccccccccccccCC
Q 036953 334 SDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 334 ~~~sgs~D~tv~p~~~~~~ 352 (792)
+|+-|.+|..||..-.
T Consensus 636 ---sgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 636 ---SGGADNSVRLWDLTKV 651 (707)
T ss_pred ---ecCCCCeEEEEEchhh
Confidence 8999999999986544
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=224.18 Aligned_cols=255 Identities=16% Similarity=0.150 Sum_probs=202.0
Q ss_pred cEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCC-CCcEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHR-RTPWVVR 144 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~-~~VtsVa 144 (792)
++|++++..+.+.+|+.... .+..|...|.++.|++++.+++||+.+|.||+|+.+-.. ++.+++|. ..|++++
T Consensus 109 RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdla 187 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLA 187 (464)
T ss_pred ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheec
Confidence 36667777788888887544 357899999999999999999999999999999976444 55666655 9999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h 222 (792)
|+| ++..+++|+.|++|+|||....+....+ +|.-.|.+++|||...+|++++++. |++||.+++.++. ....|
T Consensus 188 fSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~---tlh~H 263 (464)
T KOG0284|consen 188 FSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA---TLHGH 263 (464)
T ss_pred cCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh---hhhhc
Confidence 999 8889999999999999999988776666 5888899999999999999999666 9999999999754 66789
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCCc--eeeecCCCc------c--cCCCCceEEEEecCCCEEEEeec----cC
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS--MTRATSPGY------L--RYPPPAVFVANAQSGDHVSLAAE----LP 288 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~--~~l~t~sg~------~--~~p~~~~~l~~~ssG~~~~l~s~----l~ 288 (792)
+..|..+.|+|++++|++.+.+..++..|.+ ..+.+..++ . ....+.++...+.+|...+.... +.
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence 9999999999999988887776666555544 122222222 2 22445677777777777666553 11
Q ss_pred -cccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCcccccccccccc-CCCCC
Q 036953 289 -LMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETF-PVIPP 355 (792)
Q Consensus 289 -~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~-~~~p~ 355 (792)
.-..|...||++++.|=|.+|+ +|+.|+|+..|.-. ||++.
T Consensus 344 ~i~~AHd~~iwsl~~hPlGhil~--------------------------tgsnd~t~rfw~r~rp~d~~ 386 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLAYHPLGHILA--------------------------TGSNDRTVRFWTRNRPGDKN 386 (464)
T ss_pred CCCcccccceeeeeccccceeEe--------------------------ecCCCcceeeeccCCCCCcc
Confidence 2235899999999999999999 89999999988743 44443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=210.07 Aligned_cols=200 Identities=19% Similarity=0.290 Sum_probs=161.0
Q ss_pred CCCceEeeecccc--------eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----
Q 036953 22 RRRARNVSRLLAH--------REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---- 89 (792)
Q Consensus 22 ~s~~r~V~~l~~~--------rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---- 89 (792)
..+..-+|++... |.+..+.+++..+..++++. ..++++.|+++++||..++
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~----------------~alS~swD~~lrlWDl~~g~~t~ 99 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN----------------FALSASWDGTLRLWDLATGESTR 99 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc----------------eEEeccccceEEEEEecCCcEEE
Confidence 3444556766443 33334455555555555544 5567788999999999865
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCC--CCCcEEEEEccCC-CCEEEEEeCCCeEEEEE
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH--RRTPWVVRFHPLR-SEILASGSLDHEVRLWD 166 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH--~~~VtsVafSP~d-g~lLaSgS~DgtVrLWD 166 (792)
+|.+|...|.+++|++|.+.+++|+.|++|++||+.. .+..++..+ .+.|.+++|+|.. ..+|++++.|++||+||
T Consensus 100 ~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWn 178 (315)
T KOG0279|consen 100 RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWN 178 (315)
T ss_pred EEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEc
Confidence 6889999999999999999999999999999999864 455555433 7899999999932 78999999999999999
Q ss_pred CCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 167 ANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 167 l~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+++.+....+ +|.+.++.+.++|||.+.++|+ ++.+.+||++.++.. ..+.+...|.+++|+|+.-.|.+..
T Consensus 179 l~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l----ysl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 179 LRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL----YSLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred cCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee----EeccCCCeEeeEEecCCceeEeecc
Confidence 9999888777 6999999999999999999999 555999999998864 4677899999999999887665433
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=210.34 Aligned_cols=253 Identities=13% Similarity=0.136 Sum_probs=204.4
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEecc-----CCCcCCCCCCeEEEEEcCCCCEEEEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAK-----YCPLVPPPRSTIAAAFSPDGRTLAST 113 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~-----t~~L~gH~~~V~sLafSPDG~~LaSG 113 (792)
.+...+.+..|+|++..+++| +.|..|.+|+.. ...+++|.+.|..+.|.+|++.|+++
T Consensus 45 gh~geI~~~~F~P~gs~~aSg----------------G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~ 108 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASG----------------GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSC 108 (338)
T ss_pred CCcceEEEEEECCCCCeEeec----------------CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEe
Confidence 466789999999998877666 456666666643 23577999999999999999999999
Q ss_pred ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcE
Q 036953 114 HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGEL 193 (792)
Q Consensus 114 S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~ 193 (792)
+.|++|+.||+.+|++++.+++|.+.|..+.-+.-+..++.|++.|+++|+||++++.+++++...-.++++.|..++..
T Consensus 109 gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~q 188 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQ 188 (338)
T ss_pred cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccc
Confidence 99999999999999999999999999999986555668899999999999999999999999998999999999999999
Q ss_pred EEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----ee-eecCCC-----
Q 036953 194 LAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----MT-RATSPG----- 261 (792)
Q Consensus 194 LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~~-l~t~sg----- 261 (792)
+.+|+ |+.|++||+++..... ...+|.++|+.+..+|+|.+++.-+-+..++.|+.+ .. +.-..+
T Consensus 189 v~sggIdn~ikvWd~r~~d~~~---~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 189 VISGGIDNDIKVWDLRKNDGLY---TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred eeeccccCceeeeccccCcceE---EeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 99998 7779999999888543 678899999999999999988875555444444432 11 111111
Q ss_pred -----cccCCCCceEEEEecCCCEEEEeec-----cCcccCCCceEEEeEECCCCcEEE
Q 036953 262 -----YLRYPPPAVFVANAQSGDHVSLAAE-----LPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 262 -----~~~~p~~~~~l~~~ssG~~~~l~s~-----l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
...|.+...++..++.++....+.. +..+.||.+.|..++|.|.--+|+
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iil 324 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIIL 324 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEE
Confidence 2345566666666666666555542 235678999999999999999998
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=223.92 Aligned_cols=237 Identities=24% Similarity=0.311 Sum_probs=182.0
Q ss_pred EEEEeCCCeEEEEec------cCCCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-CCCcEEEEecCCCCCcEEEE
Q 036953 72 LVSWVEAESLRHLSA------KYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDC-QTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 72 L~S~s~d~sIrvWd~------~t~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl-~tgk~v~~L~gH~~~VtsVa 144 (792)
+++...++.+++|+. ....+.+|...|.+++|+||++++++++.|++|+|||+ ..+.+++++.+|...|++++
T Consensus 174 l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~ 253 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVA 253 (456)
T ss_pred EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEE
Confidence 555567777888877 23345789999999999999999999999999999999 55689999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h 222 (792)
|+| +++++++|+.|++|++||+++++++..+. |...|++++|++++.+|++++ |+.|+|||+.++... .......+
T Consensus 254 f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~ 331 (456)
T KOG0266|consen 254 FSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGA 331 (456)
T ss_pred ecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-eeecccCC
Confidence 999 77999999999999999999999999994 889999999999999999999 455999999998832 00112222
Q ss_pred CC--CeEEEEEccCCCeEEEEEeeCccccCC-----CceeeecCCCc--c----cCCCCceEEEEecCCCEEEEee----
Q 036953 223 RR--SLRAVHFHPHAAPFVLTAEVNDLDSSD-----SSMTRATSPGY--L----RYPPPAVFVANAQSGDHVSLAA---- 285 (792)
Q Consensus 223 ~~--sVtsVafSPdG~~LlaS~s~~dLrs~d-----~~~~l~t~sg~--~----~~p~~~~~l~~~ssG~~~~l~s---- 285 (792)
.. +++.++|+|+++++++...+..++.|+ ..........- . ........+..+..+..+.++.
T Consensus 332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 22 699999999999999877754444433 33333222221 0 0122344444555555555554
Q ss_pred -ccCcccCC-CceEEEeEECCCCcEEE
Q 036953 286 -ELPLMSSL-PFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 286 -~l~~l~gh-~~~VwdV~~SpDGr~lv 310 (792)
.+..+.+| ...+.++.+++...+++
T Consensus 412 ~~~~~l~~h~~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 412 GILQRLEGHSKAAVSDLSSHPTENLIA 438 (456)
T ss_pred chhhhhcCCCCCceeccccCCCcCeee
Confidence 33466778 89999999999999998
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=223.09 Aligned_cols=230 Identities=14% Similarity=0.143 Sum_probs=196.8
Q ss_pred CCcCCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 89 CPLVPPPRSTIAAAFSPDG-RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG-~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
+.|.+|.++|.|++-+|.. ..+++|+.||.|+|||+...++...|++|.+.|.+++++. ..+++++.|++|+.|.+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeec
Confidence 4678999999999999954 8999999999999999999999999999999999999975 78999999999999998
Q ss_pred CCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe----
Q 036953 168 NTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE---- 243 (792)
Q Consensus 168 ~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s---- 243 (792)
.. .++.++...+.+..++.+..+..+++++.. |.|||.+...... ...-..+.|.++.|+|.+..++++|.
T Consensus 137 ~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~-i~IWD~~R~~Pv~---smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 137 DG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQ-IDIWDEQRDNPVS---SMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred cC-CcceeeeccccccccccccccccccccCce-eeecccccCCccc---eeecCCCceeEEecCCCcchheeeeccCCc
Confidence 76 588888888999999999999999998754 9999998776433 23336788999999999999998884
Q ss_pred --eCccccCCC--ceeeecCCCcccCCCCceEEEEecCCCEEEEee------ccCcccCCCceEEEeEECCCCcEEEEcc
Q 036953 244 --VNDLDSSDS--SMTRATSPGYLRYPPPAVFVANAQSGDHVSLAA------ELPLMSSLPFLIVPSVSIDDSRIDLQHA 313 (792)
Q Consensus 244 --~~dLrs~d~--~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s------~l~~l~gh~~~VwdV~~SpDGr~lv~~~ 313 (792)
++|++.... ++.+....+...|.|+...|+.++++.++.+.. .+.++.+|..+|++|+|||+|++||
T Consensus 212 IvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv--- 288 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV--- 288 (433)
T ss_pred eEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc---
Confidence 566665443 356777788888877999999999988855444 7789999999999999999999999
Q ss_pred ccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 314 SRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 314 ~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+||||+||.-..+--+
T Consensus 289 -----------------------sgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 289 -----------------------SGSYDKSIRIFPVNHG 304 (433)
T ss_pred -----------------------cccccceEEEeecCCC
Confidence 9999999987665554
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-23 Score=235.37 Aligned_cols=185 Identities=23% Similarity=0.335 Sum_probs=169.1
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
.+..|+++++|.++|+|...+. ...||..+|+++.|+|-|-+|||++.|++.++|.....++++.|.+|-..|.|+
T Consensus 462 d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv 541 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCV 541 (707)
T ss_pred cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceE
Confidence 4567899999999999999876 357999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEec
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLK 221 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~ 221 (792)
.||| +..++++||.|++||+||+.+|..++.| +|.++|.+++|+|+|++|++|+.+. |.|||+..++... ...+
T Consensus 542 ~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~---~l~~ 617 (707)
T KOG0263|consen 542 SFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK---QLKG 617 (707)
T ss_pred EECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh---hhhc
Confidence 9999 9999999999999999999999999999 6999999999999999999999555 9999999988654 5667
Q ss_pred CCCCeEEEEEccCCCeEEEEEeeCccccCCCceee
Q 036953 222 TRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTR 256 (792)
Q Consensus 222 h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l 256 (792)
|.+.|+++.|+.+|..|++++.+..|+.||.....
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 89999999999999988888888888888765443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=213.17 Aligned_cols=247 Identities=16% Similarity=0.181 Sum_probs=204.9
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
+.++.+++++|+.+|.++++| ..++.+++|+.... .|..|+++|.++.|+.+|.+|++++.
T Consensus 233 ~~nkdVT~L~Wn~~G~~LatG----------------~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~v 296 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGTLLATG----------------SEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGV 296 (524)
T ss_pred CccCCcceEEecCCCCeEEEe----------------ecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccC
Confidence 455678888998887766555 78999999998755 57789999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEE
Q 036953 116 DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELL 194 (792)
Q Consensus 116 DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~L 194 (792)
|+++.|||..++.....|.-|..+-.+|.|-. .+.+++++.|+.|+++.+....|+.++ +|.+.|.++.|+|.|.+|
T Consensus 297 D~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLL 374 (524)
T ss_pred CccEEEEeccCceEEEeeeeccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceE
Confidence 99999999999999999999998878899974 678999999999999999999999888 699999999999999999
Q ss_pred EEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEE
Q 036953 195 AVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVA 273 (792)
Q Consensus 195 asgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~ 273 (792)
+++++|. ++||+........ .+..|...|+.+.|+|+|. + .++.+........ .....+.+|
T Consensus 375 aS~SdD~TlkiWs~~~~~~~~---~l~~Hskei~t~~wsp~g~--v----~~n~~~~~~l~sa--------s~dstV~lw 437 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSNSVH---DLQAHSKEIYTIKWSPTGP--V----TSNPNMNLMLASA--------SFDSTVKLW 437 (524)
T ss_pred EEecCCCeeEeeecCCCcchh---hhhhhccceeeEeecCCCC--c----cCCCcCCceEEEe--------ecCCeEEEE
Confidence 9999665 9999987766433 4567889999999999986 1 1222221111111 122457888
Q ss_pred EecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 274 NAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 274 ~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+..+|.+++.+. .|...|++++|||+|++++ +|+.|+.|.+|.+-.+
T Consensus 438 dv~~gv~i~~f~------kH~~pVysvafS~~g~ylA--------------------------sGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 438 DVESGVPIHTLM------KHQEPVYSVAFSPNGRYLA--------------------------SGSLDGCVHIWSTKTG 484 (524)
T ss_pred EccCCceeEeec------cCCCceEEEEecCCCcEEE--------------------------ecCCCCeeEeccccch
Confidence 888888877653 3999999999999999999 8999999999998777
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-21 Score=217.88 Aligned_cols=272 Identities=17% Similarity=0.201 Sum_probs=192.7
Q ss_pred CCCceEeeecccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC-CCeEEEEeccCC-------CcCC
Q 036953 22 RRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE-AESLRHLSAKYC-------PLVP 93 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~-d~sIrvWd~~t~-------~L~g 93 (792)
.++|||||....+++.+.....+....|+...- +++... ...+.|.. ++...++....+ .+.+
T Consensus 3 ~sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~-~~~n~~--------~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G 73 (493)
T PTZ00421 3 VSRFRHTQGVPARPDRHFLNVTPSTALWDCSNT-IACNDR--------FIAVPWQQLGSTAVLKHTDYGKLASNPPILLG 73 (493)
T ss_pred cccccccccccCCcccceeccccccccCCCCCc-EeECCc--------eEEEEEecCCceEEeeccccccCCCCCceEeC
Confidence 478999999999999998888888888875532 333321 11122221 122223322222 3678
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEE
Q 036953 94 PPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG-------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLW 165 (792)
Q Consensus 94 H~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg-------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLW 165 (792)
|.+.|.+++|+| ++++|++|+.|++|+|||+.++ +.+..+.+|...|.+++|+|...++|++++.|++|++|
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 999999999999 8999999999999999999765 35678899999999999999445799999999999999
Q ss_pred ECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCC-CeEEEEEccCCCeEEEEE
Q 036953 166 DANTSECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRR-SLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 166 Dl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~-sVtsVafSPdG~~LlaS~ 242 (792)
|+++++.+..+. |...|.+++|+|+|.+|++++ |+.|+|||+++++... ....|.. .+..+.|.+++..+++++
T Consensus 154 Dl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~---tl~~H~~~~~~~~~w~~~~~~ivt~G 230 (493)
T PTZ00421 154 DVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS---SVEAHASAKSQRCLWAKRKDLIITLG 230 (493)
T ss_pred ECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE---EEecCCCCcceEEEEcCCCCeEEEEe
Confidence 999999888875 888999999999999999999 5559999999877432 3344544 345788999988777655
Q ss_pred eeCccccCCCceeeecCCCcccCCCCceEEEEecCCCE-EEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCC
Q 036953 243 EVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDH-VSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSN 321 (792)
Q Consensus 243 s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~-~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~ 321 (792)
... . ....+.+|+...... ..... .+....++...|++||+.++
T Consensus 231 ~s~---s----------------~Dr~VklWDlr~~~~p~~~~~-----~d~~~~~~~~~~d~d~~~L~----------- 275 (493)
T PTZ00421 231 CSK---S----------------QQRQIMLWDTRKMASPYSTVD-----LDQSSALFIPFFDEDTNLLY----------- 275 (493)
T ss_pred cCC---C----------------CCCeEEEEeCCCCCCceeEec-----cCCCCceEEEEEcCCCCEEE-----------
Confidence 210 0 001233444322111 11110 01234566678999999887
Q ss_pred ccccccccccccCCCCCc-cccccccccccCCCCC
Q 036953 322 MQIEPSASLHLQSDSNVE-QDGTVPSMETFPVIPP 355 (792)
Q Consensus 322 v~~~~s~~~q~~~~~sgs-~D~tv~p~~~~~~~p~ 355 (792)
.++ .|.+|.-||+..+++-
T Consensus 276 ---------------lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 276 ---------------IGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred ---------------EEEeCCCeEEEEEeeCCceE
Confidence 333 4888888888776543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=200.77 Aligned_cols=269 Identities=17% Similarity=0.199 Sum_probs=197.8
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC------CCcCCCCCCeEEEEEcCCCCEEEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY------CPLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t------~~L~gH~~~V~sLafSPDG~~LaS 112 (792)
.+...++...++|+|-++++| ...+++|+|+... .++....++|..++|+.|+++|+.
T Consensus 57 EH~~~vtVAkySPsG~yiASG----------------D~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~a 120 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASG----------------DVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAA 120 (603)
T ss_pred cccceeEEEEeCCCceEEeec----------------CCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEE
Confidence 344566777788887766666 3455666666543 234556788999999999999887
Q ss_pred EEC--C--CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEE
Q 036953 113 THG--D--HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAF 187 (792)
Q Consensus 113 GS~--D--GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVaf 187 (792)
.+. + |.+.+|| +|..+..+.||...|.++.|-|..+-.++||++|++|.+|+=.--+...++ .|...|+++.|
T Consensus 121 vGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy 198 (603)
T KOG0318|consen 121 VGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY 198 (603)
T ss_pred EecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE
Confidence 654 2 3455565 677788999999999999999988889999999999999986555555555 48889999999
Q ss_pred cCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----eeeecCCC
Q 036953 188 HAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----MTRATSPG 261 (792)
Q Consensus 188 SpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~~l~t~sg 261 (792)
+|||++|++.+ |+++.|||-.+++...+......|.+.|+++.|+||+..+++++.+..++.|+-. .++.....
T Consensus 199 sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 199 SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 99999999988 6669999999998765222234699999999999999999987775554444422 11111110
Q ss_pred ------cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccc
Q 036953 262 ------YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASL 330 (792)
Q Consensus 262 ------~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~ 330 (792)
-.-|. ..+.+.+..+| .+++.. -+.+++||.-.|..+..++||++|+
T Consensus 279 v~dqqvG~lWq-kd~lItVSl~G-~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~-------------------- 336 (603)
T KOG0318|consen 279 VEDQQVGCLWQ-KDHLITVSLSG-TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY-------------------- 336 (603)
T ss_pred hhceEEEEEEe-CCeEEEEEcCc-EEEEecccCCChhheecccccceeEEEEcCCCCEEE--------------------
Confidence 11122 33333443333 333332 3347789999999999999999999
Q ss_pred cccCCCCCccccccccccccCCC
Q 036953 331 HLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 331 q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
+|+||..|.-|+...|.
T Consensus 337 ------SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 337 ------SGSYDGHINSWDSGSGT 353 (603)
T ss_pred ------eeccCceEEEEecCCcc
Confidence 99999999999988883
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=186.55 Aligned_cols=254 Identities=20% Similarity=0.306 Sum_probs=190.5
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEE
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaS 112 (792)
+..+...+.++.|+++++++.++ ..++.+++|+.... .+..|...+..+.|+++++.|++
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~----------------~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 68 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATG----------------SGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEe----------------ecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEE
Confidence 34456778899999987655444 44677777777644 35678888999999999999999
Q ss_pred EECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCC
Q 036953 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEG 191 (792)
Q Consensus 113 GS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG 191 (792)
++.|+.|++||+.+++.+..+..|...|.++.|++ +++++++++.|+.|++||+++++.+..+. +...+.+++|+|++
T Consensus 69 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147 (289)
T ss_pred EcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC
Confidence 99999999999998888888999999999999999 77888888889999999999888888775 77889999999999
Q ss_pred cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----eeeecCCC---c
Q 036953 192 ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----MTRATSPG---Y 262 (792)
Q Consensus 192 ~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~~l~t~sg---~ 262 (792)
.++++++ ++.|++||++..+... ....+...+.++.|+|+++.+++++.+..+..++.. ..+....+ .
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 224 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVA---TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccce---eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEE
Confidence 9999998 6779999998766433 344677799999999999888888775555544432 11111111 2
Q ss_pred ccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEE
Q 036953 263 LRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 263 ~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
..+.+....+.....+..+.+.. ....+..|...|.++.++++|++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEE
Confidence 22333233333333222333322 1223456888999999999999998
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-21 Score=196.86 Aligned_cols=208 Identities=16% Similarity=0.208 Sum_probs=174.5
Q ss_pred CCcEEEEEeCCCeEEEEeccCC---------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC---------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR 138 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~---------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~ 138 (792)
+...+++.+.|+++.+|+.... .+.||...|..+..++||++.++++.|+++++||+.+++..+.|.+|..
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence 3456778888888999987522 4789999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-c--cCCCeeEEEEcCC--CcEEEEEcCCe-EEEEECCCCCc
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-D--FYRPIASIAFHAE--GELLAVASGHK-LYIWPYNNKEE 212 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~--h~s~V~sVafSpd--G~~LasgSdd~-V~IWDlrt~~~ 212 (792)
.|.+++|++ |...++||+.|++|++||+... +..++ . +...|.++.|+|. ..+|++++.|+ |++||+++.+.
T Consensus 107 dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 107 DVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred ceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 999999999 9999999999999999999754 44444 2 3789999999998 67899999554 99999998875
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccC
Q 036953 213 ASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSS 292 (792)
Q Consensus 213 ~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~g 292 (792)
.. ...+|...++.+.++|||. ++++++-. ....+|+..+++++....
T Consensus 185 ~~---~~~gh~~~v~t~~vSpDGs-lcasGgkd----------------------g~~~LwdL~~~k~lysl~------- 231 (315)
T KOG0279|consen 185 RT---TFIGHSGYVNTVTVSPDGS-LCASGGKD----------------------GEAMLWDLNEGKNLYSLE------- 231 (315)
T ss_pred hh---ccccccccEEEEEECCCCC-EEecCCCC----------------------ceEEEEEccCCceeEecc-------
Confidence 43 5677999999999999999 44443311 346778888887755444
Q ss_pred CCceEEEeEECCCCcEEE
Q 036953 293 LPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 293 h~~~VwdV~~SpDGr~lv 310 (792)
|...|-.++|+|+.-+|.
T Consensus 232 a~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLC 249 (315)
T ss_pred CCCeEeeEEecCCceeEe
Confidence 778899999999999988
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=193.97 Aligned_cols=249 Identities=16% Similarity=0.211 Sum_probs=198.8
Q ss_pred cccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCC
Q 036953 31 LLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPD 106 (792)
Q Consensus 31 l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPD 106 (792)
+..+|.++.+..++..+.|+++++ .+++.+.|+.+.+||..+.. +.-....|..++|+|.
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr----------------~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS 108 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSR----------------RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS 108 (343)
T ss_pred eeeEEEecccccceeeeEecCCcC----------------eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC
Confidence 445678888888999999998866 55677888899999886541 2334567999999999
Q ss_pred CCEEEEEECCCeEEEEECCCC------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccC
Q 036953 107 GRTLASTHGDHTVKIIDCQTG------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFY 179 (792)
Q Consensus 107 G~~LaSGS~DGtVrIWDl~tg------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~ 179 (792)
|+.+|.|+-|+.+.||++.+. +..+.+.+|.+.+.++.|-+ ...|+|++-|.+.-+||+++++.+..| +|.
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~ 186 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHT 186 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCc
Confidence 999999999999999999865 34567899999999999986 568899999999999999999999998 699
Q ss_pred CCeeEEEEcC-CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeee
Q 036953 180 RPIASIAFHA-EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRA 257 (792)
Q Consensus 180 s~V~sVafSp-dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~ 257 (792)
+.|.+++++| +++.|++|+ |...++||++.+...+ .+.+|...|++|+|.|+|.-+++++.+...+..|
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~q---tF~ghesDINsv~ffP~G~afatGSDD~tcRlyD------ 257 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQ---TFEGHESDINSVRFFPSGDAFATGSDDATCRLYD------ 257 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccCcceeE---eecccccccceEEEccCCCeeeecCCCceeEEEe------
Confidence 9999999999 899999998 5559999999997643 7788999999999999999776655433333222
Q ss_pred cCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCC
Q 036953 258 TSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSN 337 (792)
Q Consensus 258 t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~s 337 (792)
...+..+.++... .-.+.|.+++||-.||+++ .
T Consensus 258 -----------------lRaD~~~a~ys~~----~~~~gitSv~FS~SGRlLf--------------------------a 290 (343)
T KOG0286|consen 258 -----------------LRADQELAVYSHD----SIICGITSVAFSKSGRLLF--------------------------A 290 (343)
T ss_pred -----------------ecCCcEEeeeccC----cccCCceeEEEcccccEEE--------------------------e
Confidence 1222223333211 1345688899999999999 6
Q ss_pred CccccccccccccCCC
Q 036953 338 VEQDGTVPSMETFPVI 353 (792)
Q Consensus 338 gs~D~tv~p~~~~~~~ 353 (792)
|-.|.++-.||+..++
T Consensus 291 gy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 291 GYDDFTCNVWDTLKGE 306 (343)
T ss_pred eecCCceeEeeccccc
Confidence 7778888999988885
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=211.43 Aligned_cols=211 Identities=18% Similarity=0.263 Sum_probs=171.9
Q ss_pred CCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCC
Q 036953 22 RRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPP 94 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH 94 (792)
.++...+|.++....+. .-...+..++|+..|.+++.|. ..-+.+.+|+-... +..+|
T Consensus 285 ssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~---------------~klgQLlVweWqsEsYVlKQQgH 349 (893)
T KOG0291|consen 285 SSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC---------------SKLGQLLVWEWQSESYVLKQQGH 349 (893)
T ss_pred cCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC---------------CccceEEEEEeeccceeeecccc
Confidence 44455577666654443 4445778888888888877663 12234455554433 35689
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
...+++++++|||+++++|+.||+|||||..++-|..+|..|+..|+.+.|+. .++.+++.+.||+|+.||+...+.-+
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceee
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred EeccCC--CeeEEEEcCCCcEEEEEcCCe--EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 175 SCDFYR--PIASIAFHAEGELLAVASGHK--LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 175 t~~h~s--~V~sVafSpdG~~LasgSdd~--V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
+|.... ...+++.+|.|.++..|+-+. |++|++++++... .+.+|.++|.+++|+|++..|++++-+..++.|
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD---iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD---ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee---hhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 986544 467888899999999998555 9999999999654 667899999999999999966665556667766
Q ss_pred C
Q 036953 251 D 251 (792)
Q Consensus 251 d 251 (792)
+
T Consensus 506 ~ 506 (893)
T KOG0291|consen 506 D 506 (893)
T ss_pred E
Confidence 5
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=201.04 Aligned_cols=248 Identities=16% Similarity=0.217 Sum_probs=199.3
Q ss_pred CcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
+..+.+++.|+++++||+.+++ +.||...|..+++|+--.++++++.|+.|+-||+...+.++.+.||-..|.+++
T Consensus 163 n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~ 242 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLD 242 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEe
Confidence 4455666889999999999885 568999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h 222 (792)
.+| .-+.|+||+.|.++|+||+++...+..+ +|..+|.++.+.|....+++|+ |.+|++||++.++.. .....|
T Consensus 243 lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~---~tlt~h 318 (460)
T KOG0285|consen 243 LHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM---ITLTHH 318 (460)
T ss_pred ccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee---Eeeecc
Confidence 999 7889999999999999999999999888 5999999999999888899999 555999999998853 466778
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCCcee--eecCCC--------------c--ccCCCCceEEEEecCCCEEEEe
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMT--RATSPG--------------Y--LRYPPPAVFVANAQSGDHVSLA 284 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~--l~t~sg--------------~--~~~p~~~~~l~~~ssG~~~~l~ 284 (792)
...|++++.||... ++++++-++++.|+.... +...++ + ..-....+.+|+-.+|.+....
T Consensus 319 kksvral~lhP~e~-~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 319 KKSVRALCLHPKEN-LFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred cceeeEEecCCchh-hhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccc
Confidence 99999999999887 555666556665553311 111111 1 1113356777777777774444
Q ss_pred e---ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCcccccccccc
Q 036953 285 A---ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSME 348 (792)
Q Consensus 285 s---~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~ 348 (792)
. ....+. .+.-|...+|...|.-|+ ++..|+||.-|+
T Consensus 398 ~t~vqpGSl~-sEagI~as~fDktg~rli--------------------------t~eadKtIk~~k 437 (460)
T KOG0285|consen 398 QTIVQPGSLE-SEAGIFASCFDKTGSRLI--------------------------TGEADKTIKMYK 437 (460)
T ss_pred cccccCCccc-cccceeEEeecccCceEE--------------------------eccCCcceEEEe
Confidence 2 222232 566788888999988888 899999999887
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=217.01 Aligned_cols=252 Identities=17% Similarity=0.255 Sum_probs=184.3
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----C-------cCCCCCCeEEEEEcC-CC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----P-------LVPPPRSTIAAAFSP-DG 107 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~-------L~gH~~~V~sLafSP-DG 107 (792)
+...+..++|++++.+ +++++.|+.|++|+.... . ...+...|.+++|++ ++
T Consensus 482 ~~~~V~~i~fs~dg~~----------------latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 482 SSNLVCAIGFDRDGEF----------------FATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK 545 (793)
T ss_pred CCCcEEEEEECCCCCE----------------EEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCC
Confidence 4445677777777654 445567788888875421 0 012345789999998 57
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEE
Q 036953 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAF 187 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVaf 187 (792)
.+|++++.||+|+|||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.|++|++||+++++++..+.....+.++.|
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~ 625 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQF 625 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEE
Confidence 89999999999999999999999999999999999999975788999999999999999999999888877788999999
Q ss_pred c-CCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCce--------eee
Q 036953 188 H-AEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSM--------TRA 257 (792)
Q Consensus 188 S-pdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~--------~l~ 257 (792)
+ +++.+|++|+ ++.|++||++..+.. ......|...|+++.|. ++..+++++.+..++.|+... .+.
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~~~--~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~ 702 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPKLP--LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLH 702 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCcc--ceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence 5 5789999998 556999999876532 23456788999999997 677777777766666555321 122
Q ss_pred cCCC------cccCCCCceEEEEecCCCEEEEeecc-C-----------------cccCCCceEEEeEECCCCcEEE
Q 036953 258 TSPG------YLRYPPPAVFVANAQSGDHVSLAAEL-P-----------------LMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 258 t~sg------~~~~p~~~~~l~~~ssG~~~~l~s~l-~-----------------~l~gh~~~VwdV~~SpDGr~lv 310 (792)
...+ ...+.+....++.+..+..+.++... . ....+...|.+++|+|+|..++
T Consensus 703 ~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lv 779 (793)
T PLN00181 703 SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLV 779 (793)
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEE
Confidence 2222 22343344455555555554444310 0 0123556799999999999988
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.7e-20 Score=211.34 Aligned_cols=305 Identities=13% Similarity=0.101 Sum_probs=205.1
Q ss_pred CCCceEeeecccceeeCCCCceeeeEEeeCCCceEeecC-CCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCC
Q 036953 22 RRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP-SDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPR 96 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~-~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~ 96 (792)
-+.++|+|....+.. ....++....|..++ +++.. .....|+.. .++..+.+++|+.... .+.+|.+
T Consensus 4 ~~~~~~~~~~~~~~~--y~diri~~~~~~s~~--ia~n~~~~A~~w~~~----gGG~~gvI~L~~~~r~~~v~~L~gH~~ 75 (568)
T PTZ00420 4 VPLIKNLYPDPSNNL--FDDLRICSRVIDSCG--IACSSGFVAVPWEVE----GGGLIGAIRLENQMRKPPVIKLKGHTS 75 (568)
T ss_pred cchhhhcCCchhhCe--eccEEccccccCcee--EeeCCCeEEEEEEcC----CCCceeEEEeeecCCCceEEEEcCCCC
Confidence 378999998766543 555566677776543 22221 111111100 1234567888876543 4789999
Q ss_pred CeEEEEEcCC-CCEEEEEECCCeEEEEECCCCc--------EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 97 STIAAAFSPD-GRTLASTHGDHTVKIIDCQTGN--------CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 97 ~V~sLafSPD-G~~LaSGS~DGtVrIWDl~tgk--------~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
.|.+++|+|+ +.+|++|+.|++|+|||+.++. .+..+.+|...|.+++|+|....+|++++.|++|++||+
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl 155 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 9999999995 8899999999999999997642 345678999999999999933345689999999999999
Q ss_pred CCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeE-----EEEEccCCCeEEEE
Q 036953 168 NTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLR-----AVHFHPHAAPFVLT 241 (792)
Q Consensus 168 ~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVt-----sVafSPdG~~LlaS 241 (792)
++++.+..+.+...|.+++|+++|.+|++++ ++.|+|||+++++... ....|...+. ...|++++.+++++
T Consensus 156 ~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~---tl~gH~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 156 ENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS---SFHIHDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred CCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE---EEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence 9998888787788899999999999999888 5569999999887532 3445655433 33456888877777
Q ss_pred EeeCccccCCCceeeecCCCcccCCCCceEEEEecC-CCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCC
Q 036953 242 AEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQS-GDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSS 320 (792)
Q Consensus 242 ~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ss-G~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg 320 (792)
+.+.. ....+.+|+... +..+.... +..+...++..+..++|.+++
T Consensus 233 G~d~~-------------------~~R~VkLWDlr~~~~pl~~~~----ld~~~~~L~p~~D~~tg~l~l---------- 279 (568)
T PTZ00420 233 GFSKN-------------------NMREMKLWDLKNTTSALVTMS----IDNASAPLIPHYDESTGLIYL---------- 279 (568)
T ss_pred EcCCC-------------------CccEEEEEECCCCCCceEEEE----ecCCccceEEeeeCCCCCEEE----------
Confidence 65431 001244555432 22222221 223556667777788899998
Q ss_pred CccccccccccccCCCCCccccccccccccCCCCC-CCCCCcCCCCCCCcCCCCCcccccccCccCccc
Q 036953 321 NMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP-GREGSVNDSFPNGIESGVSDYAVDAMDTDEMQP 388 (792)
Q Consensus 321 ~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (792)
+|+-|.+|.-|+...+... ..++. +.....+++. .|....|-|+-+-++-
T Consensus 280 ----------------sGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f-~Pkr~~dv~~cEi~R~ 330 (568)
T PTZ00420 280 ----------------IGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGF-LPKQICDVYKCEIGRV 330 (568)
T ss_pred ----------------EEECCCeEEEEEccCCcEEeecccc-cCCCccceEE-ccccccCchhhhHhHH
Confidence 7888999999998766322 22222 2222233332 3555666666655543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-19 Score=196.55 Aligned_cols=304 Identities=13% Similarity=0.151 Sum_probs=217.2
Q ss_pred CCCceEeeeccc-----ceeeCCCCceeeeEEeeCCCce-EeecCC-----CceeecCC---------------------
Q 036953 22 RRRARNVSRLLA-----HREISPKTKYVPKRQWVDASKL-KTCGPS-----DSSVRDAK--------------------- 69 (792)
Q Consensus 22 ~s~~r~V~~l~~-----~rels~~tk~V~s~aWspd~~l-la~G~~-----a~sv~d~~--------------------- 69 (792)
.++-+.||+... +.|+.+...++..+.|+.+++. .+.|.. ..+.+|.+
T Consensus 79 ~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 79 VSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred CcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence 566788998766 4556677788999999999876 444431 12223322
Q ss_pred --cEEEEEeCCCeEEEEeccC----CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec---CCCCCc
Q 036953 70 --RGLVSWVEAESLRHLSAKY----CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS---GHRRTP 140 (792)
Q Consensus 70 --~~L~S~s~d~sIrvWd~~t----~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~---gH~~~V 140 (792)
-+++++++|+++-.++..- ..+..|.+-|+|+.|+|||++|++.+.||+|.|||-.+++.+..|. +|++.|
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI 238 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI 238 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE
Confidence 2577888888888887642 2457899999999999999999999999999999999999999998 899999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------------------------------
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-------------------------------------------- 176 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-------------------------------------------- 176 (792)
.++.|+| |++.++|++.|+++|+||+.+.+++.++
T Consensus 239 falsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~ 317 (603)
T KOG0318|consen 239 FALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVIS 317 (603)
T ss_pred EEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheec
Confidence 9999999 9999999999999999999876543321
Q ss_pred ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCC----
Q 036953 177 DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD---- 251 (792)
Q Consensus 177 ~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d---- 251 (792)
+|...|+++..++++++|++++ |+.|.-||..++...+ ..-..|...|.+++-+..+. +++++-++.++.-+
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~--~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR--LAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDN 394 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc--cccccccceEEEEeecCCCc-EEEEecCCeEEEEecccC
Confidence 3555789999999999999999 5669999998887543 22345777777777765555 44444444333110
Q ss_pred ------------Ccee--------------------eecCCC-----------cccCCCCceEEEEecCCCEEEEee---
Q 036953 252 ------------SSMT--------------------RATSPG-----------YLRYPPPAVFVANAQSGDHVSLAA--- 285 (792)
Q Consensus 252 ------------~~~~--------------------l~t~sg-----------~~~~p~~~~~l~~~ssG~~~~l~s--- 285 (792)
.+.. ++...+ .....+....++++..+.++++..
T Consensus 395 ~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g 474 (603)
T KOG0318|consen 395 GYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG 474 (603)
T ss_pred cccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC
Confidence 0000 110000 122234445566666666666665
Q ss_pred ----ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 286 ----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 286 ----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
+......|..+|.+++|||||.+|+ .+-.-+-|-+|++...+..
T Consensus 475 ~~l~ee~~~~~h~a~iT~vaySpd~~yla--------------------------~~Da~rkvv~yd~~s~~~~ 522 (603)
T KOG0318|consen 475 DELKEEAKLLEHRAAITDVAYSPDGAYLA--------------------------AGDASRKVVLYDVASREVK 522 (603)
T ss_pred CcccceeeeecccCCceEEEECCCCcEEE--------------------------EeccCCcEEEEEcccCcee
Confidence 1224456889999999999999998 4444467778888777663
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.1e-20 Score=201.06 Aligned_cols=245 Identities=18% Similarity=0.236 Sum_probs=191.0
Q ss_pred CCceEeeecccce---eeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCC
Q 036953 23 RRARNVSRLLAHR---EISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPP 95 (792)
Q Consensus 23 s~~r~V~~l~~~r---els~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~ 95 (792)
+.-.++|...... .++-..+.+.+..|..||+++++| .+.+.++++|.++. .+.+|.
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaG----------------D~sG~V~vfD~k~r~iLR~~~ah~ 110 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAG----------------DESGHVKVFDMKSRVILRQLYAHQ 110 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEcc----------------CCcCcEEEeccccHHHHHHHhhcc
Confidence 3445666654432 233444567777777777777666 46778899996653 578999
Q ss_pred CCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEE
Q 036953 96 RSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECI 173 (792)
Q Consensus 96 ~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v 173 (792)
.+|..+.|+| ++..|++|+.|+.+++||+.+......+.+|+..|.+.+|+|.++.+++|||.||+||+||++.. ..+
T Consensus 111 apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 111 APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV 190 (487)
T ss_pred CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee
Confidence 9999999999 66778899999999999999888766889999999999999988889999999999999999987 788
Q ss_pred EEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 174 GSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 174 ~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
..+.|+.+|.++.+-|.|..|++++++.|++||+-++.... .....|...|+|+++..++..|++++-+..++..+
T Consensus 191 ~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll--~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd-- 266 (487)
T KOG0310|consen 191 VELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL--TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD-- 266 (487)
T ss_pred EEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh--hhhhcccceEEEEEeecCCceEeecccccceEEEE--
Confidence 88999999999999999999999999999999998766432 33444899999999999998888777555444321
Q ss_pred eeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEcccc
Q 036953 254 MTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASR 315 (792)
Q Consensus 254 ~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~ 315 (792)
..+=+.++-.. .++.|++++++||++.++++-..
T Consensus 267 ---------------------~t~~Kvv~s~~-------~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 267 ---------------------TTNYKVVHSWK-------YPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred ---------------------ccceEEEEeee-------cccceeeEEecCCCceEEEeccc
Confidence 11111122222 67788999999998888844333
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=184.69 Aligned_cols=259 Identities=19% Similarity=0.219 Sum_probs=189.8
Q ss_pred cceeeCCCCceeeeEEeeCC-CceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC-C-------CcCCCCCCeEEEEE
Q 036953 33 AHREISPKTKYVPKRQWVDA-SKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY-C-------PLVPPPRSTIAAAF 103 (792)
Q Consensus 33 ~~rels~~tk~V~s~aWspd-~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t-~-------~L~gH~~~V~sLaf 103 (792)
..+.++.++.++..++|+|- |. .|++++.|+.||+|+... . .-.+|++.|.+++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~----------------ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV----------------ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce----------------EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee
Confidence 34455666678999999888 33 345556777788887762 1 12479999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCC--cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC---cEEEEe-c
Q 036953 104 SPDGRTLASTHGDHTVKIIDCQTG--NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS---ECIGSC-D 177 (792)
Q Consensus 104 SPDG~~LaSGS~DGtVrIWDl~tg--k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg---~~v~t~-~ 177 (792)
+|.|++|++++.|.++.||.-..+ +++.+++||...|.+++|++ ++.+||+|+.|+.|-+|.+..+ +++..+ .
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 999999999999999999976543 68899999999999999999 9999999999999999998754 466666 5
Q ss_pred cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceee
Q 036953 178 FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTR 256 (792)
Q Consensus 178 h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l 256 (792)
|...|..+.|||...+|++++ |++|++|+-...........+.+|..+|.+++|++.|..++++..+..++.+.....+
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~ 228 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL 228 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc
Confidence 899999999999999999999 7779999887543333234566788899999999999988888887777776633222
Q ss_pred ec---CCCc-ccCCCCceEEEEecCCCEEEEeecc------------CcccCCCceEEEeEECCC-CcEEE
Q 036953 257 AT---SPGY-LRYPPPAVFVANAQSGDHVSLAAEL------------PLMSSLPFLIVPSVSIDD-SRIDL 310 (792)
Q Consensus 257 ~t---~sg~-~~~p~~~~~l~~~ssG~~~~l~s~l------------~~l~gh~~~VwdV~~SpD-Gr~lv 310 (792)
.. ...| ..|. .......+. ++.+.++... ....-|..-|..+.+.|. ...|+
T Consensus 229 ~~~~sr~~Y~v~W~-~~~IaS~gg-D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 229 SGMHSRALYDVPWD-NGVIASGGG-DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLA 297 (312)
T ss_pred chhcccceEeeeec-ccceEeccC-CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCcee
Confidence 11 1122 2233 222222222 2333444311 122347788999999994 33444
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-21 Score=205.76 Aligned_cols=227 Identities=19% Similarity=0.309 Sum_probs=179.4
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCC-CCCeEEEEEcCCCCEEEEEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPP-PRSTIAAAFSPDGRTLASTH 114 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH-~~~V~sLafSPDG~~LaSGS 114 (792)
.+...|.++.|++++.. ++++..++.||+|+...+. +..| ...|.+++|+|+..+|++++
T Consensus 136 aHDs~Vr~m~ws~~g~w----------------miSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~S 199 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGTW----------------MISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCS 199 (464)
T ss_pred hhcccceeEEEccCCCE----------------EEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEec
Confidence 34456777777777654 4566789999999987552 3444 48999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcE
Q 036953 115 GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGEL 193 (792)
Q Consensus 115 ~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~ 193 (792)
.||+|+|||....++..++.||.-.|+++.||| ...++++++.|..|++||.++++|+.++ .|+..|..+.|++++++
T Consensus 200 dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~ 278 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNW 278 (464)
T ss_pred CCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCe
Confidence 999999999999999999999999999999999 7889999999999999999999999998 59999999999999999
Q ss_pred EEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-eCccccCCCc-----eeeec-CCC---c
Q 036953 194 LAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDLDSSDSS-----MTRAT-SPG---Y 262 (792)
Q Consensus 194 LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dLrs~d~~-----~~l~t-~sg---~ 262 (792)
|++++.|. ++++|+++.++.. ...+|+..|+++.|||-...|+++++ +..+..+.-. ..+.. ..+ .
T Consensus 279 Llt~skD~~~kv~DiR~mkEl~---~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iws 355 (464)
T KOG0284|consen 279 LLTGSKDQSCKVFDIRTMKELF---TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWS 355 (464)
T ss_pred eEEccCCceEEEEehhHhHHHH---HhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceee
Confidence 99999665 9999999666543 56679999999999998888888776 3333322211 11110 111 3
Q ss_pred ccCCCCceEEEEecCCCEEEEee
Q 036953 263 LRYPPPAVFVANAQSGDHVSLAA 285 (792)
Q Consensus 263 ~~~p~~~~~l~~~ssG~~~~l~s 285 (792)
+.|.+-.+.++.++.++...+..
T Consensus 356 l~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 356 LAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred eeccccceeEeecCCCcceeeec
Confidence 44556667777766666655555
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=193.53 Aligned_cols=240 Identities=19% Similarity=0.256 Sum_probs=192.2
Q ss_pred CCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-----CcCC
Q 036953 22 RRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----PLVP 93 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----~L~g 93 (792)
....+++|+..+..... .+++.+..++++..+ ..+++++.|-.+++|+..+. .+.+
T Consensus 128 ~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G----------------k~l~tcSsDl~~~LWd~~~~~~c~ks~~g 191 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERSLRGHTDSVFDISFDASG----------------KYLATCSSDLSAKLWDFDTFFRCIKSLIG 191 (406)
T ss_pred CCceEEEEEccchhhhhhhhccccceeEEEEecCc----------------cEEEecCCccchhheeHHHHHHHHHHhcC
Confidence 45567777766654322 344445555554443 46677788888999998764 5789
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
|...|.++.|-|.|.+|++++.|.+|+.|++.++-++++|.+|...|..++.+. |+.++++|+.|.+|++|-+.++++.
T Consensus 192 h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k 270 (406)
T KOG0295|consen 192 HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCK 270 (406)
T ss_pred cccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhh
Confidence 999999999999999999999999999999999999999999999999999998 9999999999999999999999988
Q ss_pred EEe-ccCCCeeEEEEcCC---------------CcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 174 GSC-DFYRPIASIAFHAE---------------GELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 174 ~t~-~h~s~V~sVafSpd---------------G~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
..+ .|+.+|.+++|-|. ++++.+++. ..|++||+.++.+. ..+.+|...|..++|+|.|+
T Consensus 271 ~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL---~tL~ghdnwVr~~af~p~Gk 347 (406)
T KOG0295|consen 271 AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL---FTLVGHDNWVRGVAFSPGGK 347 (406)
T ss_pred hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE---EEEecccceeeeeEEcCCCe
Confidence 887 58999999999763 258888884 45999999999854 46778999999999999999
Q ss_pred eEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 237 PFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 237 ~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+|++++.+.. +.+|+.....|.+..-. |+..|..++|.-+--+++
T Consensus 348 yi~ScaDDkt-----------------------lrvwdl~~~~cmk~~~a------h~hfvt~lDfh~~~p~Vv 392 (406)
T KOG0295|consen 348 YILSCADDKT-----------------------LRVWDLKNLQCMKTLEA------HEHFVTSLDFHKTAPYVV 392 (406)
T ss_pred EEEEEecCCc-----------------------EEEEEeccceeeeccCC------CcceeEEEecCCCCceEE
Confidence 8888876654 44455555555443332 666777777777766777
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-21 Score=208.34 Aligned_cols=217 Identities=16% Similarity=0.256 Sum_probs=175.3
Q ss_pred CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 90 PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQT-GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 90 ~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~t-gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
.+.+|.+.|+++.|.| .+.+|++++.|+.|+||++.. ++++++|.+|..+|.+++|++ ++..++|++.|++|++||+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeecc
Confidence 5679999999999999 999999999999999999876 889999999999999999999 9999999999999999999
Q ss_pred CCCcEEEEeccCCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 168 NTSECIGSCDFYRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 168 ~tg~~v~t~~h~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
++|+++..+.....++++.|+|++ +.|++|+ +++|+.||+++++..+ ....|-+.|..+.|-++|++++++..+.
T Consensus 288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhhheeeeEEccCCceEeeeccCc
Confidence 999999999999999999999999 6677776 5669999999998544 3455788999999999999999999988
Q ss_pred ccccCCCceeeecC--C--C-----cccCCCCceEEEEecCCCEEEEeecc--------CcccCCC--ceEEEeEECCCC
Q 036953 246 DLDSSDSSMTRATS--P--G-----YLRYPPPAVFVANAQSGDHVSLAAEL--------PLMSSLP--FLIVPSVSIDDS 306 (792)
Q Consensus 246 dLrs~d~~~~l~t~--s--g-----~~~~p~~~~~l~~~ssG~~~~l~s~l--------~~l~gh~--~~VwdV~~SpDG 306 (792)
.++.|+........ . . ++...+...+++.-+-++.+.++... ..++||. +.-..+.|||||
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence 88877655322111 1 0 12222233333333446666666522 2455664 556778999999
Q ss_pred cEEE
Q 036953 307 RIDL 310 (792)
Q Consensus 307 r~lv 310 (792)
++|+
T Consensus 445 ~~l~ 448 (503)
T KOG0282|consen 445 RTLC 448 (503)
T ss_pred CeEE
Confidence 9999
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=201.77 Aligned_cols=227 Identities=15% Similarity=0.232 Sum_probs=183.9
Q ss_pred cEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGD-HTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~D-GtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
..|+++-..+...++...... +.-....|..++|+..|.+|+.|+.. |.+.||+..+...+.+.++|...+++++
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~ 357 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA 357 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence 345555555666666554332 22234569999999999999998764 8999999999998999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h 222 (792)
++| |+++++||+.||.||+||...+-|+.+| +|.+.|+.+.|+..|+.+++++ |++|+.||+.+.+.-+ ......
T Consensus 358 YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR--Tft~P~ 434 (893)
T KOG0291|consen 358 YSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR--TFTSPE 434 (893)
T ss_pred ECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee--eecCCC
Confidence 999 9999999999999999999999999999 5999999999999999999998 8889999998887543 222223
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEE
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVS 302 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~ 302 (792)
.....+|+..|.|. +++.+..+. -.+++|....|+.+ .+++||+++|..+.|
T Consensus 435 p~QfscvavD~sGe-lV~AG~~d~---------------------F~IfvWS~qTGqll------DiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGE-LVCAGAQDS---------------------FEIFVWSVQTGQLL------DILSGHEGPVSGLSF 486 (893)
T ss_pred ceeeeEEEEcCCCC-EEEeeccce---------------------EEEEEEEeecCeee------ehhcCCCCcceeeEE
Confidence 44567888889898 444443221 13788888887663 456679999999999
Q ss_pred CCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 303 IDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 303 SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
+|+|..|+ ++|+|+||.-|++|.-.
T Consensus 487 ~~~~~~La--------------------------S~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 487 SPDGSLLA--------------------------SGSWDKTVRIWDIFSSS 511 (893)
T ss_pred ccccCeEE--------------------------eccccceEEEEEeeccC
Confidence 99999999 89999999999999773
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=205.76 Aligned_cols=212 Identities=25% Similarity=0.351 Sum_probs=170.7
Q ss_pred CCCCceEeeecccce-----eeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-----C
Q 036953 21 LRRRARNVSRLLAHR-----EISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----P 90 (792)
Q Consensus 21 ~~s~~r~V~~l~~~r-----els~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----~ 90 (792)
...+...+|.....+ ++..+...+..+.|+++++ .+++++.|++|++|+.+.. .
T Consensus 178 ~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~----------------~l~s~s~D~tiriwd~~~~~~~~~~ 241 (456)
T KOG0266|consen 178 SSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS----------------YLLSGSDDKTLRIWDLKDDGRNLKT 241 (456)
T ss_pred cCCCcEEEeecccccchhhccccccccceeeeEECCCCc----------------EEEEecCCceEEEeeccCCCeEEEE
Confidence 356677778773333 3334556788888888876 4566678999999999432 5
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+.+|...|++++|+|+++.+++|+.|++|+|||+.+++++..+.+|...|++++|++ ++++|++++.|+.|++||+.++
T Consensus 242 l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCC
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred c--EEEEec-cCC--CeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCC---CCeEEEEEccCCCeEEEE
Q 036953 171 E--CIGSCD-FYR--PIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTR---RSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 171 ~--~v~t~~-h~s--~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~---~sVtsVafSPdG~~LlaS 241 (792)
. ++..+. +.. .++.+.|+|++++|+++..+ .+++||+++..... ....|. ..+.+..+++.+..++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~sg 397 (456)
T KOG0266|consen 321 SKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG---TYTGHSNLVRCIFSPTLSTGGKLIYSG 397 (456)
T ss_pred ceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee---eecccCCcceeEecccccCCCCeEEEE
Confidence 8 556653 332 58999999999999999966 59999999887654 233333 356667778889988877
Q ss_pred EeeCccccCCC
Q 036953 242 AEVNDLDSSDS 252 (792)
Q Consensus 242 ~s~~dLrs~d~ 252 (792)
..+..+..++.
T Consensus 398 ~~d~~v~~~~~ 408 (456)
T KOG0266|consen 398 SEDGSVYVWDS 408 (456)
T ss_pred eCCceEEEEeC
Confidence 77666555443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-19 Score=193.80 Aligned_cols=224 Identities=17% Similarity=0.235 Sum_probs=184.5
Q ss_pred CCCCceEeeecccceeeC--CCCceeeeEEeeCCCceEeecCCCcee-------------------------ecCCcEEE
Q 036953 21 LRRRARNVSRLLAHREIS--PKTKYVPKRQWVDASKLKTCGPSDSSV-------------------------RDAKRGLV 73 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rels--~~tk~V~s~aWspd~~lla~G~~a~sv-------------------------~d~~~~L~ 73 (792)
.-.+...+|+.......+ .+.+.+.++.|+..+.++.++..+... |.....++
T Consensus 254 ~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ 333 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFA 333 (524)
T ss_pred ecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEe
Confidence 356778888775543333 566789999999999887665543321 22233455
Q ss_pred EEeCCCeEEEEecc----CCCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC-
Q 036953 74 SWVEAESLRHLSAK----YCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL- 148 (792)
Q Consensus 74 S~s~d~sIrvWd~~----t~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~- 148 (792)
+.+.|+.|+++.+. ..++.+|...|.++.|+|.|..|++++.|++++||+.....+...|.+|...|..+.|+|+
T Consensus 334 ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g 413 (524)
T KOG0273|consen 334 TSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTG 413 (524)
T ss_pred ecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCC
Confidence 66777888888764 3468899999999999999999999999999999999988999999999999999999983
Q ss_pred -------CCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEE
Q 036953 149 -------RSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIV 219 (792)
Q Consensus 149 -------dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~ 219 (792)
.+..+++++.|++|++||+..+.++.+| +|..+|.+++|+|+|+++|+|+ ++.|+||+.++++.. ..
T Consensus 414 ~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~----~s 489 (524)
T KOG0273|consen 414 PVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV----KS 489 (524)
T ss_pred CccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee----Ee
Confidence 3467999999999999999999999999 8999999999999999999999 566999999998843 35
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 220 LKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 220 ~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
......|..|+|+-+|+.+.++.++..+.
T Consensus 490 ~~~~~~Ifel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 490 YQGTGGIFELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred ecCCCeEEEEEEcCCCCEEEEEecCCCce
Confidence 56677899999999999888887766443
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.9e-19 Score=181.33 Aligned_cols=207 Identities=23% Similarity=0.408 Sum_probs=166.1
Q ss_pred CcCCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC---cEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 036953 90 PLVPPPRSTIAAAFSPD-GRTLASTHGDHTVKIIDCQTG---NCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRL 164 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPD-G~~LaSGS~DGtVrIWDl~tg---k~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrL 164 (792)
.+.+|.+.+..++|+|- |..|++|+.|+.|+||+...+ .+...+. +|+..|+.++|+| .+++|++++.|.++.|
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVI 87 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEEE
Confidence 56789999999999996 889999999999999998843 3444443 7999999999999 9999999999999999
Q ss_pred EECCCC--cEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 165 WDANTS--ECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 165 WDl~tg--~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
|.-..+ +++.++ +|+..|.+++|+++|++||+++.++ |-||......+......+..|...|..|.|||... |++
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~ 166 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLF 166 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeE
Confidence 987754 577777 5999999999999999999999666 99999986665544456677999999999999998 455
Q ss_pred EEeeCccccCCCceeeecCCCcccCCCCceEEEEec-CCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCC
Q 036953 241 TAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQ-SGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASS 319 (792)
Q Consensus 241 S~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~s-sG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~S 319 (792)
+++++ ..++++... +++..... .+.+|..-||.++|.++|.-++
T Consensus 167 S~SYD----------------------nTIk~~~~~~dddW~c~~----tl~g~~~TVW~~~F~~~G~rl~--------- 211 (312)
T KOG0645|consen 167 SCSYD----------------------NTIKVYRDEDDDDWECVQ----TLDGHENTVWSLAFDNIGSRLV--------- 211 (312)
T ss_pred EeccC----------------------CeEEEEeecCCCCeeEEE----EecCccceEEEEEecCCCceEE---------
Confidence 55432 234444444 33332222 3667999999999999998888
Q ss_pred CCccccccccccccCCCCCcccccccccccc
Q 036953 320 SNMQIEPSASLHLQSDSNVEQDGTVPSMETF 350 (792)
Q Consensus 320 g~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~ 350 (792)
+.+-|.||.-|...
T Consensus 212 -----------------s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 212 -----------------SCSDDGTVSIWRLY 225 (312)
T ss_pred -----------------EecCCcceEeeeec
Confidence 68888888887744
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=196.74 Aligned_cols=255 Identities=15% Similarity=0.147 Sum_probs=199.8
Q ss_pred ceEeeecccceee---CCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCC-CCC
Q 036953 25 ARNVSRLLAHREI---SPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVP-PPR 96 (792)
Q Consensus 25 ~r~V~~l~~~rel---s~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~g-H~~ 96 (792)
...+|+....+.. ......++++.|+++|..++.| ..++.+.+||.... .+.+ |..
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG----------------~~~g~v~iwD~~~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVG----------------TSDGTVQIWDVKEQKKTRTLRGSHAS 261 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEe----------------ecCCeEEEEehhhccccccccCCcCc
Confidence 4455555443311 1224567777777777766555 56778888887644 3556 899
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE-ecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV-LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~-L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
.|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|.++.|++ |+.++++|+.|+.+.|||....+++..
T Consensus 262 rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~ 338 (484)
T KOG0305|consen 262 RVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFT 338 (484)
T ss_pred eeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEE
Confidence 99999998 78899999999999999998775554 889999999999999 999999999999999999987777766
Q ss_pred e-ccCCCeeEEEEcCCC-cEEEEEc---CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 176 C-DFYRPIASIAFHAEG-ELLAVAS---GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 176 ~-~h~s~V~sVafSpdG-~~LasgS---dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
+ .|...|..++|+|-. .+||+|+ |..|++||..++..+. .......|..|.|++..+.|+++.+.-
T Consensus 339 ~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~----~vdtgsQVcsL~Wsk~~kEi~sthG~s----- 409 (484)
T KOG0305|consen 339 FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID----SVDTGSQVCSLIWSKKYKELLSTHGYS----- 409 (484)
T ss_pred EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec----ccccCCceeeEEEcCCCCEEEEecCCC-----
Confidence 6 699999999999954 6888887 3449999999887543 445678899999999998888877532
Q ss_pred CCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccc
Q 036953 251 DSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASL 330 (792)
Q Consensus 251 d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~ 330 (792)
...+.+|...+=+ -...+.+|..+|..++.||||..++
T Consensus 410 ----------------~n~i~lw~~ps~~------~~~~l~gH~~RVl~la~SPdg~~i~-------------------- 447 (484)
T KOG0305|consen 410 ----------------ENQITLWKYPSMK------LVAELLGHTSRVLYLALSPDGETIV-------------------- 447 (484)
T ss_pred ----------------CCcEEEEeccccc------eeeeecCCcceeEEEEECCCCCEEE--------------------
Confidence 2245555555511 1223567999999999999999999
Q ss_pred cccCCCCCccccccccccccCCCCC
Q 036953 331 HLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 331 q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
+|.-|.|+..|..|+..|.
T Consensus 448 ------t~a~DETlrfw~~f~~~~~ 466 (484)
T KOG0305|consen 448 ------TGAADETLRFWNLFDERPK 466 (484)
T ss_pred ------EecccCcEEeccccCCCCc
Confidence 8999999999999997554
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=205.18 Aligned_cols=243 Identities=15% Similarity=0.216 Sum_probs=196.8
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
++.++..++|+|...++ ++.--.+.|++||.+.+ ++.+|.++|..++|+|+...|+||+.
T Consensus 8 kSsRvKglsFHP~rPwI----------------LtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWI----------------LTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGD 71 (1202)
T ss_pred ccccccceecCCCCCEE----------------EEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCC
Confidence 44567778888886654 44456788999999877 46799999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEE
Q 036953 116 DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELL 194 (792)
Q Consensus 116 DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~L 194 (792)
|-+|++|+..+.+|+.++.||-..|+.+.||+ .-.+++|+|.|.||++|+..+++++..+ +|...|.|..|||....+
T Consensus 72 DykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI 150 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI 150 (1202)
T ss_pred ccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceE
Confidence 99999999999999999999999999999999 8899999999999999999999999998 699999999999999999
Q ss_pred EEEc-CCeEEEEECCCCCccc--------------------------CCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 195 AVAS-GHKLYIWPYNNKEEAS--------------------------SPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 195 asgS-dd~V~IWDlrt~~~~~--------------------------~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
+++| |-+|++||+..-+... ......+|.+.|+-++|||.-. ++++++++
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DD-- 227 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADD-- 227 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCc--
Confidence 9999 7779999985432100 0123446888999999999888 44454433
Q ss_pred ccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccccc
Q 036953 248 DSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPS 327 (792)
Q Consensus 248 rs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s 327 (792)
..+++|..+..+- -+..+..||...|.++-|.|.-..|+
T Consensus 228 --------------------RqVKlWrmnetKa----WEvDtcrgH~nnVssvlfhp~q~lIl----------------- 266 (1202)
T KOG0292|consen 228 --------------------RQVKLWRMNETKA----WEVDTCRGHYNNVSSVLFHPHQDLIL----------------- 266 (1202)
T ss_pred --------------------ceeeEEEeccccc----eeehhhhcccCCcceEEecCccceeE-----------------
Confidence 1233444333211 13334667999999999999999999
Q ss_pred ccccccCCCCCccccccccccccCC
Q 036953 328 ASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 328 ~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+.+.|++|+-||.-.-
T Consensus 267 ---------SnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 267 ---------SNSEDKSIRVWDMTKR 282 (1202)
T ss_pred ---------ecCCCccEEEEecccc
Confidence 7889999999995544
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-19 Score=205.66 Aligned_cols=159 Identities=21% Similarity=0.344 Sum_probs=136.2
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+.||.+.|..+.||. .++|++++.|++|+||++...+|++.|. |...|+||+|+|.|.+++++|+.|+.||||++...
T Consensus 365 f~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~ 442 (712)
T KOG0283|consen 365 FKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK 442 (712)
T ss_pred hhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcC
Confidence 579999999999995 5689999999999999999999999997 99999999999999999999999999999999998
Q ss_pred cEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEe------cCCCCeEEEEEccCCC-eEEEEE
Q 036953 171 ECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVL------KTRRSLRAVHFHPHAA-PFVLTA 242 (792)
Q Consensus 171 ~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~------~h~~sVtsVafSPdG~-~LlaS~ 242 (792)
+.+.-.+...-|++++|.|||++.++|+ +|.+++|+....+......+.. .+. .|+.+.|.|... .+++++
T Consensus 443 ~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTS 521 (712)
T KOG0283|consen 443 KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTS 521 (712)
T ss_pred eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEec
Confidence 8887777789999999999999999999 6669999998776433111111 133 799999998654 488888
Q ss_pred eeCccccCCC
Q 036953 243 EVNDLDSSDS 252 (792)
Q Consensus 243 s~~dLrs~d~ 252 (792)
.|..||..+.
T Consensus 522 nDSrIRI~d~ 531 (712)
T KOG0283|consen 522 NDSRIRIYDG 531 (712)
T ss_pred CCCceEEEec
Confidence 8888887665
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-19 Score=198.45 Aligned_cols=215 Identities=16% Similarity=0.251 Sum_probs=175.9
Q ss_pred CCCCCCceEeeecccceeeCC---CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----Cc
Q 036953 19 NHLRRRARNVSRLLAHREISP---KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PL 91 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels~---~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L 91 (792)
.+.-.+...||+-.++..+.. ....+....|. ..+..++++++|..||+++..+. ++
T Consensus 30 a~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfi----------------aRknWiv~GsDD~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 30 AALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFI----------------ARKNWIVTGSDDMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred EeeecCeeEEEecccceeeeeeeecccchhhheee----------------eccceEEEecCCceEEEEecccceeeEEe
Confidence 344566778887776654431 11122222222 23456777789999999998765 57
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG-NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg-k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
..|.+-|.+++.+|...+++++|.|-+|++||.+.+ .+.++|.||...|.+++|+|.|.+.++|++.|++||+|.+...
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence 899999999999999999999999999999998754 6889999999999999999999999999999999999999998
Q ss_pred cEEEEe-ccCCCeeEEEEcCCC--cEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc
Q 036953 171 ECIGSC-DFYRPIASIAFHAEG--ELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 171 ~~v~t~-~h~s~V~sVafSpdG--~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
.+..++ +|...|++++|-+.| .+|++|+||. |+|||.++..++. .+.+|...|..+.|||.-..+++++.+..
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~---TLeGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ---TLEGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH---HhhcccccceEEEecCCCcEEEEecCCcc
Confidence 888888 599999999998755 6999999776 9999999998765 56779999999999999987777776877
Q ss_pred cccCCC
Q 036953 247 LDSSDS 252 (792)
Q Consensus 247 Lrs~d~ 252 (792)
++.|..
T Consensus 251 vriWhs 256 (794)
T KOG0276|consen 251 VRIWNS 256 (794)
T ss_pred EEEecC
Confidence 776653
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-18 Score=178.30 Aligned_cols=244 Identities=20% Similarity=0.343 Sum_probs=187.7
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
.+.+++++.++++|.. ++++++|.++++||...++ +..++-+|..++|....+.++.++.
T Consensus 13 ~~~~i~sl~fs~~G~~----------------litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt 76 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLL----------------LITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST 76 (311)
T ss_pred CCCceeEEEecCCCCE----------------EEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC
Confidence 4567788888777664 3444566677777766542 3345567889999887777777776
Q ss_pred --CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcE
Q 036953 116 --DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGEL 193 (792)
Q Consensus 116 --DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~ 193 (792)
|.+|+.-++.+++.++.|.||...|..++.+| .++.+++++.|++|++||++..++...+...+. ..++|+|+|-+
T Consensus 77 k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLi 154 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLI 154 (311)
T ss_pred CCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcE
Confidence 88999999999999999999999999999999 779999999999999999998888777653332 34789999999
Q ss_pred EEEEcCC-eEEEEECCCCCcccCCeEEe--cCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCce
Q 036953 194 LAVASGH-KLYIWPYNNKEEASSPIIVL--KTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAV 270 (792)
Q Consensus 194 LasgSdd-~V~IWDlrt~~~~~~~~~~~--~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~ 270 (792)
+|++.+. .|++||+|.-.......... ......+.+.|+|||++++++.... .+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-----------------------~~ 211 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-----------------------FI 211 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-----------------------cE
Confidence 9999965 69999999876543222222 2356789999999999999887432 45
Q ss_pred EEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCcccccccccccc
Q 036953 271 FVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETF 350 (792)
Q Consensus 271 ~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~ 350 (792)
.+.++-+|.....+.+.+.-...+ .++.|+|||++++ +|++|.+|..|...
T Consensus 212 ~~lDAf~G~~~~tfs~~~~~~~~~---~~a~ftPds~Fvl--------------------------~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 212 YLLDAFDGTVKSTFSGYPNAGNLP---LSATFTPDSKFVL--------------------------SGSDDGTIHVWNLE 262 (311)
T ss_pred EEEEccCCcEeeeEeeccCCCCcc---eeEEECCCCcEEE--------------------------EecCCCcEEEEEcC
Confidence 666777777666665433222122 6799999999999 89999999999986
Q ss_pred CCC
Q 036953 351 PVI 353 (792)
Q Consensus 351 ~~~ 353 (792)
.|.
T Consensus 263 tg~ 265 (311)
T KOG1446|consen 263 TGK 265 (311)
T ss_pred CCc
Confidence 663
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=199.32 Aligned_cols=224 Identities=20% Similarity=0.283 Sum_probs=185.9
Q ss_pred CCCCCCC---CCCCCCceEeeecccc---eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEe
Q 036953 12 SLRSQPS---NHLRRRARNVSRLLAH---REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLS 85 (792)
Q Consensus 12 ~~~~~~~---~s~~s~~r~V~~l~~~---rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd 85 (792)
.+++..| .+..++-++.|+-.-. .++..+...|..+.|+|...++ +++++|..|++|+
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplF----------------VSGGDDykIkVWn 79 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLF----------------VSGGDDYKIKVWN 79 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeE----------------EecCCccEEEEEe
Confidence 3555555 7778899999964322 2334567789999999997755 4457899999999
Q ss_pred ccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCe
Q 036953 86 AKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161 (792)
Q Consensus 86 ~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt 161 (792)
.+.. +|.||-+.|..+.|++.-.+|+|+|.|.+|+||+..+++++..+.||...|.|..|+| ..++++|+|.|.+
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQT 158 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccce
Confidence 8865 5789999999999999999999999999999999999999999999999999999999 8899999999999
Q ss_pred EEEEECCCC---------------------------cEEEE--e-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCC
Q 036953 162 VRLWDANTS---------------------------ECIGS--C-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNK 210 (792)
Q Consensus 162 VrLWDl~tg---------------------------~~v~t--~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~ 210 (792)
||+||+..- ..+.. + +|...|+-++|||.-.+|++|+||+ |++|.++..
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 999998521 11111 1 4788999999999999999999888 999999877
Q ss_pred CcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 211 EEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 211 ~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
+... .-...+|...|.++-|||..+.+++.+.+..++.||..
T Consensus 239 KaWE-vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 239 KAWE-VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred ccee-ehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence 6543 34567799999999999999988888888888877754
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-18 Score=174.75 Aligned_cols=211 Identities=19% Similarity=0.255 Sum_probs=169.5
Q ss_pred CCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcC
Q 036953 22 RRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLV 92 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~ 92 (792)
-.-.++.|.+.+.+... .....|+.+...|+++.++.+ ....||+||+.++ .+.
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa-----------------~~qhvRlyD~~S~np~Pv~t~e 80 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAA-----------------GNQHVRLYDLNSNNPNPVATFE 80 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhc-----------------cCCeeEEEEccCCCCCceeEEe
Confidence 44457788887765544 455578888888887766554 2345788887654 467
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
+|.+.|.++.|..||+.+++|+.||++||||++...+-+.|+ |..+|+++..+| +...|++|..+|.|++||+.+..+
T Consensus 81 ~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 81 GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCcc
Confidence 899999999999999999999999999999999877666665 889999999999 889999999999999999999877
Q ss_pred EEEe--ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccC--C-eEEecCCCCeEEEEEccCCCeEEEEEeeCc
Q 036953 173 IGSC--DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASS--P-IIVLKTRRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 173 v~t~--~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~--~-~~~~~h~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
...+ +..-.|.++...|||++|+.+.+ +..++|++-....... | ..+..|.+.+..+.++||+++|++++++..
T Consensus 159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt 238 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT 238 (311)
T ss_pred ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence 7766 45678999999999999999885 4599999976543321 2 234558999999999999999998888766
Q ss_pred cccCC
Q 036953 247 LDSSD 251 (792)
Q Consensus 247 Lrs~d 251 (792)
++.|.
T Consensus 239 v~iwn 243 (311)
T KOG0315|consen 239 VKIWN 243 (311)
T ss_pred EEEEe
Confidence 65443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-19 Score=188.57 Aligned_cols=217 Identities=18% Similarity=0.204 Sum_probs=171.4
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
-+.+|.+.|.|+++.|...+|++|+.|++|+|||+.+|+...++.||...|..+++++ ...++++++.|+.|++||+..
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechh
Confidence 3679999999999999999999999999999999999999999999999999999999 888999999999999999999
Q ss_pred CcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 170 SECIGSC-DFYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 170 g~~v~t~-~h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
.+.++.+ +|-+.|.+++.+|.-..|++++.| .++|||+++...+ ..+.+|..+|.+|.+.|....+++++-+..+
T Consensus 225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V---~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV---HVLSGHTNPVASVMCQPTDPQVITGSHDSTV 301 (460)
T ss_pred hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceE---EEecCCCCcceeEEeecCCCceEEecCCceE
Confidence 9988887 689999999999999999999955 4999999998754 3667799999999999988778776665555
Q ss_pred ccCC-----CceeeecCCC---cccCCCCceEEEEecCCCEEEEee----ccCcccCCCceEEEeEECCCCcEEE
Q 036953 248 DSSD-----SSMTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA----ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 248 rs~d-----~~~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s----~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+.|| ....+....- .....+....|+.+..++...+.- -+..+++|..-|..+....||-++.
T Consensus 302 rlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~ 376 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVS 376 (460)
T ss_pred EEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEE
Confidence 5444 3333322111 111222223333333333322222 1234678999999999999999887
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-19 Score=201.36 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=192.3
Q ss_pred cCCcEEEEEeCCCeEEEEeccCC--------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcE-----EE-
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYC--------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNC-----LK- 131 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~--------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~-----v~- 131 (792)
..+..+++++.|+++++|....+ +..+|...|.+++++. ...+|+++|.|.++++|++...+. +.
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 44568899999999999977322 4579999999999987 446899999999999999975321 11
Q ss_pred ---EecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEE
Q 036953 132 ---VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWP 206 (792)
Q Consensus 132 ---~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWD 206 (792)
.-..|...|++++++| +.++++|||.|++.++|+++..+...++ +|...+.++.|++..+.++++|.|+ |+||.
T Consensus 455 ~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 2237999999999999 9999999999999999999998888888 6999999999999999999999555 99999
Q ss_pred CCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeec
Q 036953 207 YNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAE 286 (792)
Q Consensus 207 lrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~ 286 (792)
+.+..+.+ .+.+|...|..+.|-.+|+.|++++++. .+++|...+..|...
T Consensus 534 is~fSClk---T~eGH~~aVlra~F~~~~~qliS~~adG-----------------------liKlWnikt~eC~~t--- 584 (775)
T KOG0319|consen 534 ISTFSCLK---TFEGHTSAVLRASFIRNGKQLISAGADG-----------------------LIKLWNIKTNECEMT--- 584 (775)
T ss_pred eccceeee---eecCccceeEeeeeeeCCcEEEeccCCC-----------------------cEEEEeccchhhhhh---
Confidence 99998765 6777999999999999999998888654 577788777777433
Q ss_pred cCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 287 LPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 287 l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+..|..+||....++.+.+++ +|..|..|-.|+....
T Consensus 585 ---lD~H~DrvWaL~~~~~~~~~~--------------------------tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 585 ---LDAHNDRVWALSVSPLLDMFV--------------------------TGGGDGRIIFWKDVTE 621 (775)
T ss_pred ---hhhccceeEEEeecCccceeE--------------------------ecCCCeEEEEeecCcH
Confidence 344999999999999999999 7888888888887666
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-18 Score=183.35 Aligned_cols=245 Identities=16% Similarity=0.190 Sum_probs=187.4
Q ss_pred CCceEeeecccceeeC--CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC--------cC
Q 036953 23 RRARNVSRLLAHREIS--PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP--------LV 92 (792)
Q Consensus 23 s~~r~V~~l~~~rels--~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~--------L~ 92 (792)
.+..++|+...+.... .++..+.+++|.... .....+++++.|+++++|..+.+. ..
T Consensus 124 Dg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n-------------~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~ 190 (423)
T KOG0313|consen 124 DGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKN-------------SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR 190 (423)
T ss_pred CCeeEEEecCCceEEEEecCCcceeeeEEEecC-------------CccceEEEecCCceEEEEEecCchhhhhHHhHhc
Confidence 3456666654443222 444455555553332 123468899999999999887542 34
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-------------------------CCcEEEEecCCCCCcEEEEEcc
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ-------------------------TGNCLKVLSGHRRTPWVVRFHP 147 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~-------------------------tgk~v~~L~gH~~~VtsVafSP 147 (792)
||.+.|.++...++|..+++|+.|.+|+||+.. ++.++..+.||..+|.++.|.+
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 999999999999999999999999999999932 1234567889999999999986
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCe
Q 036953 148 LRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 148 ~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
...+++++.|.+|+.||+.+++.+.++..+..++++++++..++|++|+.+. |++||-+++........+.+|...|
T Consensus 271 --~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV 348 (423)
T KOG0313|consen 271 --ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV 348 (423)
T ss_pred --CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh
Confidence 7899999999999999999999999998899999999999999999999666 9999999886544445677899999
Q ss_pred EEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC
Q 036953 227 RAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS 306 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG 306 (792)
.+|.|+|...+++++++.+ ...++|+..+. ...+..+.+|...|.+++++. |
T Consensus 349 ssvkwsp~~~~~~~S~S~D----------------------~t~klWDvRS~-----k~plydI~~h~DKvl~vdW~~-~ 400 (423)
T KOG0313|consen 349 SSVKWSPTNEFQLVSGSYD----------------------NTVKLWDVRST-----KAPLYDIAGHNDKVLSVDWNE-G 400 (423)
T ss_pred hheecCCCCceEEEEEecC----------------------CeEEEEEeccC-----CCcceeeccCCceEEEEeccC-C
Confidence 9999999999999888733 23344443221 223344555788888888875 4
Q ss_pred cEEE
Q 036953 307 RIDL 310 (792)
Q Consensus 307 r~lv 310 (792)
.+|+
T Consensus 401 ~~Iv 404 (423)
T KOG0313|consen 401 GLIV 404 (423)
T ss_pred ceEE
Confidence 4555
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.7e-18 Score=168.21 Aligned_cols=217 Identities=24% Similarity=0.353 Sum_probs=162.9
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
++.+|...|.+++|+|++++|++++.|+.|++||+.+++....+..|...+..+.|++ +++++++++.|+.|++||+.+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCc
Confidence 4668999999999999999999999999999999999888888899999999999999 778999999999999999998
Q ss_pred CcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 170 SECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 170 g~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
++.+..+. +...+.++.|+++++++++++ ++.|++||+++.+... ....|...+++++|+|++..++++..+..+
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT---TLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE---EeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 77777764 667899999999999999998 7779999998665432 334578889999999998866555434444
Q ss_pred ccCC-----CceeeecCCC---cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEE
Q 036953 248 DSSD-----SSMTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 248 rs~d-----~~~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
..++ ....+..... ...+.+....++....+..+.+.. ....+..|...+..+.++|++.+++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLA 235 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEE
Confidence 4333 2222222221 233433432333333333333333 1223446788999999999988888
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=185.51 Aligned_cols=225 Identities=20% Similarity=0.237 Sum_probs=187.4
Q ss_pred EEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-EEEEecCCCCCcEEEEEccC
Q 036953 73 VSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN-CLKVLSGHRRTPWVVRFHPL 148 (792)
Q Consensus 73 ~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk-~v~~L~gH~~~VtsVafSP~ 148 (792)
.++..|-+.++||..++. -..|..-|.+++|+.|.++|++|+.++.++|||++..+ +...+.+|.+.|..+-|..
T Consensus 75 asaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~- 153 (334)
T KOG0278|consen 75 ASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH- 153 (334)
T ss_pred hhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-
Confidence 344566777889887773 24688889999999999999999999999999998654 5677889999999999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEE
Q 036953 149 RSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRA 228 (792)
Q Consensus 149 dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVts 228 (792)
..+.+++.+.|++||+||.++++.++++..+++|+++..+++|++|.++....|..||.++.+..+ ...-...|.+
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK----s~k~P~nV~S 229 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK----SYKMPCNVES 229 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccccee----eccCcccccc
Confidence 778888889999999999999999999999999999999999999999988889999999887543 3445667999
Q ss_pred EEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcE
Q 036953 229 VHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRI 308 (792)
Q Consensus 229 VafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~ 308 (792)
..++|+...+++.+.+.. .+-.+..+|..+... .++|.+.|.++.|+|||..
T Consensus 230 ASL~P~k~~fVaGged~~-----------------------~~kfDy~TgeEi~~~-----nkgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFK-----------------------VYKFDYNTGEEIGSY-----NKGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred ccccCCCceEEecCcceE-----------------------EEEEeccCCceeeec-----ccCCCCceEEEEECCCCce
Confidence 999999976665554321 223344555554442 4679999999999999999
Q ss_pred EEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCCC
Q 036953 309 DLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPPG 356 (792)
Q Consensus 309 lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~~ 356 (792)
.+ +||.|.||.-|-+-|+.+..
T Consensus 282 yA--------------------------sGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 282 YA--------------------------SGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred ee--------------------------ccCCCceEEEEEecCCCchh
Confidence 99 89999999999999997664
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=194.34 Aligned_cols=245 Identities=13% Similarity=0.208 Sum_probs=194.8
Q ss_pred CCCeEEEEeccCCCc--CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEE
Q 036953 77 EAESLRHLSAKYCPL--VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILA 154 (792)
Q Consensus 77 ~d~sIrvWd~~t~~L--~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLa 154 (792)
..+++++|+.++.+. .-....+.+..|-|.++++++|...|.+.+||+.+...+..+++|.+.|+.++.+| |+..++
T Consensus 392 a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~v 470 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFV 470 (888)
T ss_pred CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceE
Confidence 456788888775421 11233688999999999999999999999999999999999999999999999999 999999
Q ss_pred EEeCCCeEEEEECCC-----Cc--------EEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEe
Q 036953 155 SGSLDHEVRLWDANT-----SE--------CIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 155 SgS~DgtVrLWDl~t-----g~--------~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
++|.|++|++||..- +. ...++.....|.++.+||||++|+++- +++++||-+++.+- .....
T Consensus 471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF---flsLY 547 (888)
T KOG0306|consen 471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF---FLSLY 547 (888)
T ss_pred EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee---eeeec
Confidence 999999999999742 11 113445678899999999999999998 88899999988873 35778
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe-----eCccccCCCceeeecCC---CcccCCCCceEEEEecCCCEEEEee-----cc
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSSDSSMTRATSP---GYLRYPPPAVFVANAQSGDHVSLAA-----EL 287 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~d~~~~l~t~s---g~~~~p~~~~~l~~~ssG~~~~l~s-----~l 287 (792)
+|.-+|.+++.+||++.+++++. .|.++.+|....+.... .+..|.|..++|+....+..++-+. ..
T Consensus 548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh
Confidence 99999999999999996666555 55566666665554433 3566766766666655555555543 34
Q ss_pred CcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccC
Q 036953 288 PLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFP 351 (792)
Q Consensus 288 ~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~ 351 (792)
..+.+|...||+.+.+|+|.+++ ++|.|++|.-|+---
T Consensus 628 q~L~~H~~ev~cLav~~~G~~vv--------------------------s~shD~sIRlwE~td 665 (888)
T KOG0306|consen 628 QKLDGHHSEVWCLAVSPNGSFVV--------------------------SSSHDKSIRLWERTD 665 (888)
T ss_pred eeeccchheeeeeEEcCCCCeEE--------------------------eccCCceeEeeeccC
Confidence 56788999999999999999999 899999999998544
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-18 Score=193.87 Aligned_cols=178 Identities=13% Similarity=0.216 Sum_probs=141.4
Q ss_pred EEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEecCCCC
Q 036953 71 GLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAFSPDG-RTLASTHGDHTVKIIDCQTGNCLKVLSGHRR 138 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLafSPDG-~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~ 138 (792)
.|++++.|++|++|+.... .+.+|...|.+++|+|++ +.|++++.|++|+|||+.+++.+..+.+|..
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~ 169 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD 169 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence 5677788899999987543 357899999999999975 7999999999999999999999999999999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCC-CeeEEEEcCCCcEEEEEc-----CCeEEEEECCCCC
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYR-PIASIAFHAEGELLAVAS-----GHKLYIWPYNNKE 211 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s-~V~sVafSpdG~~LasgS-----dd~V~IWDlrt~~ 211 (792)
.|.+++|+| ++.+|++++.|++|++||+++++.+..+. |.+ .+..+.|.+++..|++++ ++.|++||+++..
T Consensus 170 ~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 170 QITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred ceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 999999999 99999999999999999999999888774 544 345788999887777654 3459999998765
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-eCccccC
Q 036953 212 EASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDLDSS 250 (792)
Q Consensus 212 ~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dLrs~ 250 (792)
... ..........+....|+++++.+++++. +..|+.+
T Consensus 249 ~p~-~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriw 287 (493)
T PTZ00421 249 SPY-STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCF 287 (493)
T ss_pred Cce-eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence 322 1111223445667789999998877764 4444443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-19 Score=187.79 Aligned_cols=239 Identities=16% Similarity=0.247 Sum_probs=192.9
Q ss_pred EEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CcEEEEecCCCCCcEEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT-GNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t-gk~v~~L~gH~~~VtsVaf 145 (792)
.++++++|.+|++||..+++ |.+|.+.|.+++|+..|++|++++.|-.+++||..+ .++++.+.+|...|.+++|
T Consensus 122 ~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f 201 (406)
T KOG0295|consen 122 LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFF 201 (406)
T ss_pred EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEE
Confidence 35566789999999999884 679999999999999999999999999999999976 5678888899999999999
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCC
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTR 223 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~ 223 (792)
-| .++++++|+.|.+|+.|++.++.++.++ .|...+..+..+.||.++++++.+ +|++|-+.+.+... ....|.
T Consensus 202 ~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~---~lR~hE 277 (406)
T KOG0295|consen 202 LP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA---ELREHE 277 (406)
T ss_pred Ee-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhh---hhhccc
Confidence 99 8899999999999999999999999999 488899999999999999999954 59999999886543 456788
Q ss_pred CCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEEC
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSI 303 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~S 303 (792)
-+|-+++|.|...+--.+..... ......... .--...+++|+.+.|.|+.. +.+|..+|.+++|+
T Consensus 278 h~vEci~wap~~~~~~i~~at~~--~~~~~~l~s------~SrDktIk~wdv~tg~cL~t------L~ghdnwVr~~af~ 343 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGS--TNGGQVLGS------GSRDKTIKIWDVSTGMCLFT------LVGHDNWVRGVAFS 343 (406)
T ss_pred cceEEEEecccccCcchhhccCC--CCCccEEEe------ecccceEEEEeccCCeEEEE------EecccceeeeeEEc
Confidence 89999999997642111000000 000001111 11234688888888877444 44599999999999
Q ss_pred CCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 304 DDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 304 pDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
|-|+||+ +-.-|+|+.-||.....
T Consensus 344 p~Gkyi~--------------------------ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 344 PGGKYIL--------------------------SCADDKTLRVWDLKNLQ 367 (406)
T ss_pred CCCeEEE--------------------------EEecCCcEEEEEeccce
Confidence 9999999 78889999999987763
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=180.30 Aligned_cols=206 Identities=21% Similarity=0.233 Sum_probs=170.4
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ-TGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~-tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
.+.+|++.|+.+.|+|+|..|++|+.|..|.+|+.. ..+...++++|.++|+.+.|.+ |+..+++|+.|++|+.||++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEecc
Confidence 578999999999999999999999999999999954 4456788899999999999999 99999999999999999999
Q ss_pred CCcEEEEec-cCCCeeEEEEcCCCcEEE-EEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 169 TSECIGSCD-FYRPIASIAFHAEGELLA-VASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 169 tg~~v~t~~-h~s~V~sVafSpdG~~La-sgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+|++++.+. |.+-++++.-+.-|..|+ ++++++ +++||+++.+..+ .......++++.|..++..+++++=++
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~----t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK----TFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh----ccccceeEEEEEecccccceeeccccC
Confidence 999999985 888888888666665554 555554 9999999887544 444567799999999998777666555
Q ss_pred ccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccc
Q 036953 246 DLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIE 325 (792)
Q Consensus 246 dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~ 325 (792)
+++.| +...++..++ ++||...|..+..+++|.+++
T Consensus 197 ~ikvW-----------------------d~r~~d~~~~------lsGh~DtIt~lsls~~gs~ll--------------- 232 (338)
T KOG0265|consen 197 DIKVW-----------------------DLRKNDGLYT------LSGHADTITGLSLSRYGSFLL--------------- 232 (338)
T ss_pred ceeee-----------------------ccccCcceEE------eecccCceeeEEeccCCCccc---------------
Confidence 55444 4333344333 445999999999999999999
Q ss_pred ccccccccCCCCCccccccccccccCCCCC
Q 036953 326 PSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 326 ~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
+.+-|.|++.||+-|-.|.
T Consensus 233 -----------snsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 233 -----------SNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred -----------cccccceEEEEEecccCCC
Confidence 7889999999999988766
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-19 Score=191.33 Aligned_cols=224 Identities=17% Similarity=0.253 Sum_probs=182.9
Q ss_pred ceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCC
Q 036953 63 SSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR 138 (792)
Q Consensus 63 ~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~ 138 (792)
..+.-.+.+++++..|++|++||.+.- .|.||.+.|.|+.|. .+.|++|+.|.+|+|||.++++++.++-.|..
T Consensus 201 YClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHce 278 (499)
T KOG0281|consen 201 YCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE 278 (499)
T ss_pred EEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcc
Confidence 445557788999999999999998753 678999999999995 67999999999999999999999999999999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE---Ee-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcc
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG---SC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEA 213 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~---t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~ 213 (792)
.|..+.|+. .+++||+.|.++.+||+.....+. .+ +|...|+.+.|+ .++++++++++ |++|++.+.+.+
T Consensus 279 aVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv 353 (499)
T KOG0281|consen 279 AVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV 353 (499)
T ss_pred eeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeee
Confidence 999999975 799999999999999998754322 12 688999999985 55999998555 999999999865
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCC
Q 036953 214 SSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSL 293 (792)
Q Consensus 214 ~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh 293 (792)
. ...+|...|-++.+. ++.+++++++. .+.+|..+.|.| +.++.||
T Consensus 354 R---tl~gHkRGIAClQYr--~rlvVSGSSDn-----------------------tIRlwdi~~G~c------LRvLeGH 399 (499)
T KOG0281|consen 354 R---TLNGHKRGIACLQYR--DRLVVSGSSDN-----------------------TIRLWDIECGAC------LRVLEGH 399 (499)
T ss_pred h---hhhcccccceehhcc--CeEEEecCCCc-----------------------eEEEEeccccHH------HHHHhch
Confidence 4 566788888888774 66444444343 466778788777 4456679
Q ss_pred CceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 294 PFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 294 ~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
+..|-++.|. .+-|| +|.||.+|.-||...++.+
T Consensus 400 EeLvRciRFd--~krIV--------------------------SGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 400 EELVRCIRFD--NKRIV--------------------------SGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred HHhhhheeec--Cceee--------------------------eccccceEEEEecccccCC
Confidence 9999999885 46677 8999999999998888533
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=198.11 Aligned_cols=179 Identities=22% Similarity=0.308 Sum_probs=159.4
Q ss_pred CCcEEEEEeCCCeEEEEeccCC-------------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC-------------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS 134 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~-------------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~ 134 (792)
+-..+++++.|.++++|+.... ....|.+.|+|++++|+.+.|++||.|++.+||++.......+|.
T Consensus 423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs 502 (775)
T KOG0319|consen 423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS 502 (775)
T ss_pred CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee
Confidence 3446788999999999998651 124799999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCc
Q 036953 135 GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEE 212 (792)
Q Consensus 135 gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~ 212 (792)
||+..|+++.|+| .+++++|+|.|++||||.+.+..|+++|. |...|..+.|-.+|+.|++++.++ |++|++++.++
T Consensus 503 GH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 503 GHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred CCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 9999999999999 88999999999999999999999999995 999999999999999999988555 99999999997
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 213 ASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 213 ~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
.. ....|.+.|.++..+|.+..+++++++..+..|
T Consensus 582 ~~---tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 582 EM---TLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred hh---hhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 65 677899999999999999977666666555443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=175.50 Aligned_cols=175 Identities=19% Similarity=0.293 Sum_probs=149.9
Q ss_pred CCcEEEEEeCCCeEEEEeccCC-----CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC-----PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~-----~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vt 141 (792)
....++++..|+++++||.... .++.|...|.++.|++ +...+++++-|++||||+.+.++.+.+|.+|...|.
T Consensus 72 ~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 72 HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 4456788888999999996432 4678999999999999 777888999999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEeccCCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCcccCCeE
Q 036953 142 VVRFHPLRSEILASGSLDHEVRLWDANT-SECIGSCDFYRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASSPII 218 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~v~t~~h~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~~~~ 218 (792)
...|+|..++++++++.|+++++||++. ++.+....|...|.++.|+.-. ..|++++ |+.|++||+++-+.. ...
T Consensus 152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p--l~e 229 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP--LFE 229 (311)
T ss_pred EEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc--cee
Confidence 9999999999999999999999999986 5565544588899999999755 6777777 445999999988743 245
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEee
Q 036953 219 VLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 219 ~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
+.+|.-.|+.|+|+|....++++++.
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASY 255 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccc
Confidence 57789999999999999989888873
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=201.42 Aligned_cols=267 Identities=19% Similarity=0.200 Sum_probs=187.7
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC-CCeEEEEec----cCCCcCCCCCCeEEEEEcCCCCEEEEEE
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE-AESLRHLSA----KYCPLVPPPRSTIAAAFSPDGRTLASTH 114 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~-d~sIrvWd~----~t~~L~gH~~~V~sLafSPDG~~LaSGS 114 (792)
+++.+.++.-+|++..+++|+ .+.|++..+|+... ......++. ..+++..|...|+|+.|++||++||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgG---q~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGG---QVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCC---ccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 445678889999999888884 22234444554321 112223333 2346778999999999999999999999
Q ss_pred CCCeEEEEECCC------------------CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 115 GDHTVKIIDCQT------------------GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 115 ~DGtVrIWDl~t------------------gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
.|+.|.||.... .+++..+.+|...|..++|+| ++.+|++++.|++|.+||.++.+.+..+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeee
Confidence 999999998762 135678899999999999999 9999999999999999999999888888
Q ss_pred -ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCccc---CCeEEecCCCCeEEEEEccCCCeEEEEEeeCc-----
Q 036953 177 -DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEAS---SPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND----- 246 (792)
Q Consensus 177 -~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~---~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d----- 246 (792)
+|.+.|..+.|+|-|+|||+-+||+ |+||++......+ .+.........++.+.|+|||++|++..+.+.
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 5999999999999999999999776 9999977654332 11111223456889999999998887554221
Q ss_pred ----cccCCCceeeecCCC-----------cccC--------C-CCceEEEEecCCCEEEEee---ccCcc---cCCCce
Q 036953 247 ----LDSSDSSMTRATSPG-----------YLRY--------P-PPAVFVANAQSGDHVSLAA---ELPLM---SSLPFL 296 (792)
Q Consensus 247 ----Lrs~d~~~~l~t~sg-----------~~~~--------p-~~~~~l~~~ssG~~~~l~s---~l~~l---~gh~~~ 296 (792)
-..|+....+-+... |... + .....+++++.+..+.++. .-+++ .-....
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 112222222211111 0000 0 0113566666666655555 11222 224578
Q ss_pred EEEeEECCCCcEEE
Q 036953 297 IVPSVSIDDSRIDL 310 (792)
Q Consensus 297 VwdV~~SpDGr~lv 310 (792)
|+|+.++|||..|+
T Consensus 328 I~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLF 341 (942)
T ss_pred eeeeeEcCCCCeEE
Confidence 99999999999888
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-18 Score=182.13 Aligned_cols=221 Identities=16% Similarity=0.196 Sum_probs=169.1
Q ss_pred CCCCCCCceEeeecccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCCCCC
Q 036953 18 SNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRS 97 (792)
Q Consensus 18 ~~s~~s~~r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~~ 97 (792)
.-.|.+++|+||....+++.|....+++...|+....-+..-..+..+...+++-+....-..+-..+..+-.+.+|...
T Consensus 4 ~~vR~SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~ 83 (472)
T KOG0303|consen 4 HVVRSSKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAP 83 (472)
T ss_pred hhhhhhhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCcccc
Confidence 45678999999999999999999999999999887432211111111211222222222222222233344467899999
Q ss_pred eEEEEEcC-CCCEEEEEECCCeEEEEECCCC-------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 98 TIAAAFSP-DGRTLASTHGDHTVKIIDCQTG-------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 98 V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg-------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
|..++|+| +.+.|||||.|.+|.||++..+ +.+..|.+|...|.-+.|||.-.+.|+|++.|.+|.+||+.+
T Consensus 84 vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t 163 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT 163 (472)
T ss_pred ccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC
Confidence 99999999 8899999999999999998643 457788999999999999998889999999999999999999
Q ss_pred CcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCC-CCeEEEEEccCCCeEEEEE
Q 036953 170 SECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTR-RSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 170 g~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~-~sVtsVafSPdG~~LlaS~ 242 (792)
++.+.++.|..-|.+++|+.||.+|++++.++ |+|||.++++...+ ...|. ..-..+.|-.+|. +++++
T Consensus 164 geali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e---~~~heG~k~~Raifl~~g~-i~tTG 234 (472)
T KOG0303|consen 164 GEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE---GVAHEGAKPARAIFLASGK-IFTTG 234 (472)
T ss_pred CceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee---cccccCCCcceeEEeccCc-eeeec
Confidence 99999999999999999999999999999555 99999999986541 12332 2334556888888 55544
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.7e-18 Score=184.94 Aligned_cols=236 Identities=18% Similarity=0.230 Sum_probs=180.6
Q ss_pred cEEEEEeCCCeEEEEeccCC-----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYC-----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~-----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
..+++++.|+.|++|++... ++.+|..+|..++|+.+|..|++++.|+.|++||+.+|+++..|. ....++++.
T Consensus 228 hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvk 306 (503)
T KOG0282|consen 228 HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVK 306 (503)
T ss_pred eEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeee
Confidence 45566677888888887542 578999999999999999999999999999999999999999986 456789999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h 222 (792)
|+|++.+.+++|+.|+.|+.||+++++.++.+. |-+.|..+.|-++|+.++++++++ ++||+.+..-..+ ......
T Consensus 307 f~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik--~i~~~~ 384 (503)
T KOG0282|consen 307 FHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK--NIADPE 384 (503)
T ss_pred cCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch--hhcchh
Confidence 999666999999999999999999999988885 778999999999999999999777 9999998887554 222334
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCC--c--------eeeecCCC---cccCCCCceEEEEecCCCEEEEee----
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDS--S--------MTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA---- 285 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~--~--------~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s---- 285 (792)
.-+..++..+|+++++++-+-++.+-.... + ..-....| .+++.+..-++..+.++....++.
T Consensus 385 ~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 385 MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 456678899999997765444333321111 1 11111222 345666677777766666656655
Q ss_pred -ccCcccCCCceEEEeEECCCCcE
Q 036953 286 -ELPLMSSLPFLIVPSVSIDDSRI 308 (792)
Q Consensus 286 -~l~~l~gh~~~VwdV~~SpDGr~ 308 (792)
....++.|...+..+.|-|--.-
T Consensus 465 kl~~~lkah~~~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 465 KLVSKLKAHDQPCIGVDWHPVEPS 488 (503)
T ss_pred hhhhccccCCcceEEEEecCCCcc
Confidence 34567778888888888886543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-17 Score=166.80 Aligned_cols=235 Identities=14% Similarity=0.070 Sum_probs=173.3
Q ss_pred EEEEEeCCCeEEEEeccC----CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 036953 71 GLVSWVEAESLRHLSAKY----CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH 146 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t----~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafS 146 (792)
.|+++..|.+..+|-... +++.+|.+.|+|+..+.+.+++++|+.|.+++|||+.+|+++..++ -..+|..+.|+
T Consensus 24 LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~ 102 (327)
T KOG0643|consen 24 LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFS 102 (327)
T ss_pred EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeec
Confidence 567788888888887643 3678999999999999999999999999999999999999999987 66789999999
Q ss_pred cCCCCEEEEEeCC-----CeEEEEECCC-------CcEEEEe-ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCc
Q 036953 147 PLRSEILASGSLD-----HEVRLWDANT-------SECIGSC-DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEE 212 (792)
Q Consensus 147 P~dg~lLaSgS~D-----gtVrLWDl~t-------g~~v~t~-~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~ 212 (792)
+ ++++++.+..+ +.|.++|++. .++...+ .+.+.++.+.|.|-+++|++|.+ +.|.+||++++++
T Consensus 103 ~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~ 181 (327)
T KOG0643|consen 103 F-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE 181 (327)
T ss_pred c-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce
Confidence 9 88887776543 5799999983 4555555 47799999999999999999984 5599999999865
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc-----cccCCCceeeecCC--CcccCCCCceEEEEecCCCE---EE
Q 036953 213 ASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND-----LDSSDSSMTRATSP--GYLRYPPPAVFVANAQSGDH---VS 282 (792)
Q Consensus 213 ~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d-----Lrs~d~~~~l~t~s--g~~~~p~~~~~l~~~ssG~~---~~ 282 (792)
.. .....|...|+.++|+||..++++++.+.. +++.....+..+.. +.....|-.-++.. ..|.. +.
T Consensus 182 ~v--~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~Vil-gGGqeA~dVT 258 (327)
T KOG0643|consen 182 LV--DSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVIL-GGGQEAMDVT 258 (327)
T ss_pred ee--echhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEe-cCCceeeeee
Confidence 32 233457889999999999999888777443 33322222222111 11112111111111 11111 11
Q ss_pred Ee-----------------eccCcccCCCceEEEeEECCCCcEEE
Q 036953 283 LA-----------------AELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 283 l~-----------------s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.. .+...++||=+.|..++|+|||+...
T Consensus 259 TT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYs 303 (327)
T KOG0643|consen 259 TTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYS 303 (327)
T ss_pred eecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccc
Confidence 11 14567899999999999999999988
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-17 Score=164.26 Aligned_cols=188 Identities=21% Similarity=0.246 Sum_probs=158.0
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
....+..+.+.-++++ .+++..|+++|+|+...+ ++.+|...|..++.+.|...|++|+.
T Consensus 16 ~qgaV~avryN~dGnY----------------~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg 79 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNY----------------CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG 79 (307)
T ss_pred cccceEEEEEccCCCE----------------EEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC
Confidence 3345666666666654 355567999999999877 45789999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC--cEEEEec-cCCCeeEEEEcCCCc
Q 036953 116 DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS--ECIGSCD-FYRPIASIAFHAEGE 192 (792)
Q Consensus 116 DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg--~~v~t~~-h~s~V~sVafSpdG~ 192 (792)
|+.|.+||+++|+.++.|.+|.+.|+.++|+. +...+++|+.|.++++||.+.. ++++.+. ....|.++... +.
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~h 156 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EH 156 (307)
T ss_pred CceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--cc
Confidence 99999999999999999999999999999998 8999999999999999999874 6788774 77889888864 56
Q ss_pred EEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 193 LLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 193 ~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
.|++|+ |++++.||++.+... ...-..+|++++|+++++..++++-+..++.-|
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~-----sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLS-----SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred EEEeeccCCcEEEEEeecceee-----hhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 777777 777999999999743 233467899999999999999888777766444
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-17 Score=177.17 Aligned_cols=275 Identities=14% Similarity=0.165 Sum_probs=203.4
Q ss_pred eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEE
Q 036953 35 REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTH 114 (792)
Q Consensus 35 rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS 114 (792)
+.+.-++..|.-+.|+++|+++|++.. |....+|....|..+++. .++.+|..+|.-+.||||.++|++|+
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSk-----D~Taiiw~v~~d~~~kl~----~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASK-----DSTAIIWIVVYDVHFKLK----KTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccC-----CceEEEEEEecCcceeee----eeeecccCceEEEEECCCCCeEEecC
Confidence 344457778999999999999888753 334467777777765553 35789999999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--cCCCeeEEEEcCCC
Q 036953 115 GDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD--FYRPIASIAFHAEG 191 (792)
Q Consensus 115 ~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~--h~s~V~sVafSpdG 191 (792)
.|..+.+||+.+|.+...+. +|...+.+++|.| |+..+++|+.|+++..||+... .+..+. ....|.+++..+||
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred chHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCC
Confidence 99999999999999887775 4568999999999 9999999999999999999754 333332 34579999999999
Q ss_pred cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCccccCCCceeeecCCC----
Q 036953 192 ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSSDSSMTRATSPG---- 261 (792)
Q Consensus 192 ~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~d~~~~l~t~sg---- 261 (792)
+++++.. |.+|++|+........ ......+|++.+.+.+++++++.-. .||+..+...........
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fi 442 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRG----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFI 442 (519)
T ss_pred cEEEEEecccceeeechhhhhhhc----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceE
Confidence 9887776 5559999997766442 3445678999999999998888666 555543222111111111
Q ss_pred -cccCCC-CceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCC-cEEEEccccccCCCCcccccccccccc
Q 036953 262 -YLRYPP-PAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDS-RIDLQHASRRASSSNMQIEPSASLHLQ 333 (792)
Q Consensus 262 -~~~~p~-~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDG-r~lv~~~~~~~~Sg~v~~~~s~~~q~~ 333 (792)
...|-. ...|++.+++++.+.++. -+..++||...|.+|+++|.- +.++
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~A----------------------- 499 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFA----------------------- 499 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhh-----------------------
Confidence 111211 224555555555555444 234678899999999999976 4555
Q ss_pred CCCCCcccccccccccc
Q 036953 334 SDSNVEQDGTVPSMETF 350 (792)
Q Consensus 334 ~~~sgs~D~tv~p~~~~ 350 (792)
+++-|.||.-|...
T Consensus 500 ---SasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 500 ---SASDDGTIRIWGPS 513 (519)
T ss_pred ---ccCCCCeEEEecCC
Confidence 78889999999754
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-18 Score=178.39 Aligned_cols=213 Identities=25% Similarity=0.306 Sum_probs=172.1
Q ss_pred CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------------C------cEEEEecCCCCCcEEEEEccCCC
Q 036953 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT------------G------NCLKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t------------g------k~v~~L~gH~~~VtsVafSP~dg 150 (792)
.-+..|+..+.+.+|++||.++++|+.|..|+|.|+.. + ..+++|..|...|+++.|+| ..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hh
Confidence 34678999999999999999999999999999999861 1 24678889999999999999 89
Q ss_pred CEEEEEeCCCeEEEEECCCC---cEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCe
Q 036953 151 EILASGSLDHEVRLWDANTS---ECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 151 ~lLaSgS~DgtVrLWDl~tg---~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
.+|++++.|++|+++|.... +..+.+....+|.++.|||.|.+|++|.++- +++||+++.++-.......+|.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 99999999999999999763 3344556678899999999999999999765 9999999988643222345688999
Q ss_pred EEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC
Q 036953 227 RAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS 306 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG 306 (792)
++|.+++.++..++++.+.. +++|++-++.|+..... .+ -...|.++.|+.+|
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~-----------------------IklwDGVS~rCv~t~~~--AH--~gsevcSa~Ftkn~ 317 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGA-----------------------IKLWDGVSNRCVRTIGN--AH--GGSEVCSAVFTKNG 317 (430)
T ss_pred eEEEecCCccEEEEeccCCc-----------------------EEeeccccHHHHHHHHh--hc--CCceeeeEEEccCC
Confidence 99999999996666655553 55566666666544431 11 24689999999999
Q ss_pred cEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 307 RIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 307 r~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
++|+ +...|.+|-.|+++.|-+-
T Consensus 318 kyiL--------------------------sSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 318 KYIL--------------------------SSGKDSTVKLWEISTGRML 340 (430)
T ss_pred eEEe--------------------------ecCCcceeeeeeecCCceE
Confidence 9999 6677999999999988544
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=183.77 Aligned_cols=208 Identities=20% Similarity=0.231 Sum_probs=169.7
Q ss_pred CCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vt 141 (792)
.++.|+.+.+..++.+||...- ++..-.-..++++.+||.+..+++..||.|.|||+.+...++.|+||...+.
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 3456677777888999998643 2333344678899999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEe
Q 036953 142 VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~ 220 (792)
||.+++ ++..|-||+.|++||.||+++++.+...++.+.|.++.++|++.+|++|..+. +.|......+. ..+.
T Consensus 556 cIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k----yqlh 630 (705)
T KOG0639|consen 556 CIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK----YQLH 630 (705)
T ss_pred eEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc----eeec
Confidence 999999 99999999999999999999999999999999999999999999999998544 77777655542 4567
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEe
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPS 300 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV 300 (792)
.|...|.++.|.+.|++++.++.++-+..|.. |.....| -.. -...|.++
T Consensus 631 lheScVLSlKFa~cGkwfvStGkDnlLnawrt-------------PyGasiF----------qsk-------E~SsVlsC 680 (705)
T KOG0639|consen 631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT-------------PYGASIF----------QSK-------ESSSVLSC 680 (705)
T ss_pred ccccEEEEEEecccCceeeecCchhhhhhccC-------------cccccee----------ecc-------ccCcceee
Confidence 78999999999999999999998765444321 1111111 111 24578899
Q ss_pred EECCCCcEEE
Q 036953 301 VSIDDSRIDL 310 (792)
Q Consensus 301 ~~SpDGr~lv 310 (792)
++|-|.++||
T Consensus 681 DIS~ddkyIV 690 (705)
T KOG0639|consen 681 DISFDDKYIV 690 (705)
T ss_pred eeccCceEEE
Confidence 9999999999
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=185.23 Aligned_cols=211 Identities=18% Similarity=0.259 Sum_probs=177.9
Q ss_pred CCCCceEeeecccceeeC---C-CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-----Cc
Q 036953 21 LRRRARNVSRLLAHREIS---P-KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----PL 91 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rels---~-~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----~L 91 (792)
...+...||+....+.+. . +..++.+++|. ...+.+| ..++.|..+|++.. .+
T Consensus 236 ~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssG----------------sr~~~I~~~dvR~~~~~~~~~ 297 (484)
T KOG0305|consen 236 TSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSG----------------SRDGKILNHDVRISQHVVSTL 297 (484)
T ss_pred ecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEe----------------cCCCcEEEEEEecchhhhhhh
Confidence 366788999877766655 3 45578888887 2334444 56777777777643 37
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe--CCCeEEEEECCC
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS--LDHEVRLWDANT 169 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS--~DgtVrLWDl~t 169 (792)
.+|...|+.++|++|+++||+|+.|+.+.|||....+....+..|...|..++|+|....+||+|+ .|+.|++||..+
T Consensus 298 ~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 298 QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred hcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence 789999999999999999999999999999999888889999999999999999998889999985 799999999999
Q ss_pred CcEEEEeccCCCeeEEEEcCCCcEEEEEc---CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc
Q 036953 170 SECIGSCDFYRPIASIAFHAEGELLAVAS---GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 170 g~~v~t~~h~s~V~sVafSpdG~~LasgS---dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
++.+..+...+.|.++.|++..+.|+++- ++.|.||++.+.+.. ....+|...|..++++|||..+++++++..
T Consensus 378 g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~---~~l~gH~~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 378 GARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV---AELLGHTSRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred CcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee---eeecCCcceeEEEEECCCCCEEEEecccCc
Confidence 99999999999999999999998777764 345999999886643 467789999999999999999999999888
Q ss_pred cccCCC
Q 036953 247 LDSSDS 252 (792)
Q Consensus 247 Lrs~d~ 252 (792)
++.|+.
T Consensus 455 lrfw~~ 460 (484)
T KOG0305|consen 455 LRFWNL 460 (484)
T ss_pred EEeccc
Confidence 887653
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-16 Score=190.87 Aligned_cols=232 Identities=16% Similarity=0.194 Sum_probs=170.3
Q ss_pred CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----c----EEEEecCCCCCcEEEEEccCCCCEEEEEeCCC
Q 036953 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG----N----CLKVLSGHRRTPWVVRFHPLRSEILASGSLDH 160 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg----k----~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg 160 (792)
+.+..|...|++++|+|++++|++|+.|+.|+|||+... . ....+. +...|.+++|++.++.+|++++.|+
T Consensus 477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCC
Confidence 456679999999999999999999999999999997532 1 223333 3467999999986678999999999
Q ss_pred eEEEEECCCCcEEEEe-ccCCCeeEEEEcC-CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEcc-CCC
Q 036953 161 EVRLWDANTSECIGSC-DFYRPIASIAFHA-EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP-HAA 236 (792)
Q Consensus 161 tVrLWDl~tg~~v~t~-~h~s~V~sVafSp-dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP-dG~ 236 (792)
+|++||+.+++.+..+ .|...|++++|+| ++.+|++++ |+.|++||++++.... ...+...|.++.|++ ++.
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~----~~~~~~~v~~v~~~~~~g~ 631 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG----TIKTKANICCVQFPSESGR 631 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE----EEecCCCeEEEEEeCCCCC
Confidence 9999999999888887 5889999999996 788999998 4559999998876432 233456799999964 677
Q ss_pred eEEEEEeeCccccCCCc------eeeecCCC---cccCCCCceEEEEecCCCEEEEeec-----------cCcccCCCce
Q 036953 237 PFVLTAEVNDLDSSDSS------MTRATSPG---YLRYPPPAVFVANAQSGDHVSLAAE-----------LPLMSSLPFL 296 (792)
Q Consensus 237 ~LlaS~s~~dLrs~d~~------~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s~-----------l~~l~gh~~~ 296 (792)
.+++++.+..+..|+.. ..+..... ...|.... .++.+..+..+.++.- ...+.+|...
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 77766665555544432 11221111 23333233 3334344445555431 2346678899
Q ss_pred EEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 297 IVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 297 VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+..+.++++|++|+ +|+.|++|..|+....
T Consensus 711 i~~v~~s~~~~~la--------------------------sgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 711 KNFVGLSVSDGYIA--------------------------TGSETNEVFVYHKAFP 740 (793)
T ss_pred eeEEEEcCCCCEEE--------------------------EEeCCCEEEEEECCCC
Confidence 99999999999999 8999999999986544
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=181.42 Aligned_cols=239 Identities=17% Similarity=0.200 Sum_probs=168.3
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC--------CcCC-CCCCeEEEEEcCCCCE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC--------PLVP-PPRSTIAAAFSPDGRT 109 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~--------~L~g-H~~~V~sLafSPDG~~ 109 (792)
..++.|..++.+|.|. ++++++.|..++.||+..- ++.. -...|++++|++.|..
T Consensus 165 hgtk~Vsal~~Dp~Ga----------------R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~ 228 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGA----------------RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQ 228 (641)
T ss_pred CCceEEEEeeecCCCc----------------eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCe
Confidence 3445666666666654 6677788888999987522 2322 2346899999999999
Q ss_pred EEEEECCCeEEEEECCCCcEE------------EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe
Q 036953 110 LASTHGDHTVKIIDCQTGNCL------------KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSC 176 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tgk~v------------~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~ 176 (792)
|++.+..-..+|+|-...+.+ ..-+||...+++.+|+|.+...++||+.|+++|+||+++- +.+..+
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 998888889999996533322 2235899999999999988899999999999999999874 333444
Q ss_pred c------cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCC--CeEEEEEccCCCeEEEEEeeCcc
Q 036953 177 D------FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRR--SLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 177 ~------h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~--sVtsVafSPdG~~LlaS~s~~dL 247 (792)
. ..-.++.++|++||+.||+|+ |+.|.+||...............|.. .|++|.|++||++|++-+.+..+
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL 388 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL 388 (641)
T ss_pred eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence 2 223688999999999999998 55599999866554433344455765 89999999999999887776655
Q ss_pred ccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCC
Q 036953 248 DSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASS 319 (792)
Q Consensus 248 rs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~S 319 (792)
+.|+.+-.. .+++...++. ..+.-.+++||||-++|+...+..++.
T Consensus 389 KvWDLrq~k----------------------kpL~~~tgL~----t~~~~tdc~FSPd~kli~TGtS~~~~~ 434 (641)
T KOG0772|consen 389 KVWDLRQFK----------------------KPLNVRTGLP----TPFPGTDCCFSPDDKLILTGTSAPNGM 434 (641)
T ss_pred eeeeccccc----------------------cchhhhcCCC----ccCCCCccccCCCceEEEecccccCCC
Confidence 555433111 1122222221 234455789999999999444444443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-16 Score=168.28 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=135.7
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEE
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaS 112 (792)
+..++..+..++.+|+.+++++| +.|..-.+|+..++ .+.+|++.|+++.||.||.+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTG----------------GgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLAT 123 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATG----------------GGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLAT 123 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEec----------------CCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEe
Confidence 44566678888888877666665 56666778887766 56799999999999999999999
Q ss_pred EECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCC
Q 036953 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEG 191 (792)
Q Consensus 113 GS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG 191 (792)
|..+|.|+||+..++.....+...-..|.=+.||| ...+|+.|+.||.+.+|.+.++...+.+ +|+.++++=.|.|+|
T Consensus 124 GdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG 202 (399)
T KOG0296|consen 124 GDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG 202 (399)
T ss_pred cCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC
Confidence 99999999999999998888876666777799999 9999999999999999999996555555 699999999999999
Q ss_pred cEEEEEcC-CeEEEEECCCCCc
Q 036953 192 ELLAVASG-HKLYIWPYNNKEE 212 (792)
Q Consensus 192 ~~LasgSd-d~V~IWDlrt~~~ 212 (792)
+.++++.+ +.|++||.+++..
T Consensus 203 Kr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 203 KRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred ceEEEEecCceEEEEecCCCce
Confidence 99999995 4599999998763
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-17 Score=182.71 Aligned_cols=248 Identities=14% Similarity=0.212 Sum_probs=198.7
Q ss_pred cccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc----CCCCCCeEEEEEcCC
Q 036953 31 LLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL----VPPPRSTIAAAFSPD 106 (792)
Q Consensus 31 l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L----~gH~~~V~sLafSPD 106 (792)
+..+|.+..++.+|.++.++|...++-++ ...+.+.+|+..+.++ .-..-+|.+..|-+.
T Consensus 3 l~~krk~~~rSdRVKsVd~HPtePw~la~----------------LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaR 66 (794)
T KOG0276|consen 3 LDFKRKFQSRSDRVKSVDFHPTEPWILAA----------------LYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIAR 66 (794)
T ss_pred chhhhHhhccCCceeeeecCCCCceEEEe----------------eecCeeEEEecccceeeeeeeecccchhhheeeec
Confidence 34466677788899999999997765333 3345566666665533 234567889999988
Q ss_pred CCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-ccCCCeeE
Q 036953 107 GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSC-DFYRPIAS 184 (792)
Q Consensus 107 G~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~-~h~s~V~s 184 (792)
-+++++|+.|..|+||+.++++.++.|.+|...|++++.|| ...+++|+|.|-+||+||.+.+ .+.++| +|...|.+
T Consensus 67 knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ 145 (794)
T ss_pred cceEEEecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence 89999999999999999999999999999999999999999 7789999999999999999875 566777 59999999
Q ss_pred EEEcCCC-cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC-eEEEEEeeCccccCCCceeeecCCC
Q 036953 185 IAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA-PFVLTAEVNDLDSSDSSMTRATSPG 261 (792)
Q Consensus 185 VafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~-~LlaS~s~~dLrs~d~~~~l~t~sg 261 (792)
++|+|.. +.|++++ |.+|++|.+...... ..+.+|...|++|+|-+-|+ ..+.+++++
T Consensus 146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~n---fTl~gHekGVN~Vdyy~~gdkpylIsgaDD---------------- 206 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPN---FTLEGHEKGVNCVDYYTGGDKPYLISGADD---------------- 206 (794)
T ss_pred EEecCCCccceeeeeccccEEEEEcCCCCCc---eeeeccccCcceEEeccCCCcceEEecCCC----------------
Confidence 9999965 7899999 777999999877643 35668999999999988662 234444433
Q ss_pred cccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccc
Q 036953 262 YLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQD 341 (792)
Q Consensus 262 ~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D 341 (792)
..+++|+..+-.| ..++.||...|..++|.|.=-+|+ +||.|
T Consensus 207 ------~tiKvWDyQtk~C------V~TLeGHt~Nvs~v~fhp~lpiii--------------------------sgsED 248 (794)
T KOG0276|consen 207 ------LTIKVWDYQTKSC------VQTLEGHTNNVSFVFFHPELPIII--------------------------SGSED 248 (794)
T ss_pred ------ceEEEeecchHHH------HHHhhcccccceEEEecCCCcEEE--------------------------EecCC
Confidence 2466777666544 345667999999999999998888 89999
Q ss_pred cccccccccCC
Q 036953 342 GTVPSMETFPV 352 (792)
Q Consensus 342 ~tv~p~~~~~~ 352 (792)
.||.-|.....
T Consensus 249 GTvriWhs~Ty 259 (794)
T KOG0276|consen 249 GTVRIWNSKTY 259 (794)
T ss_pred ccEEEecCcce
Confidence 99999985544
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-16 Score=163.86 Aligned_cols=269 Identities=14% Similarity=0.176 Sum_probs=190.3
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC-C-----CcCCCCCCeEEEEEcCCCCEEEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY-C-----PLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t-~-----~L~gH~~~V~sLafSPDG~~LaS 112 (792)
+-...+..++|+|.... .+..++.|+++|+|++.. + ....|.++|.+++|+.||.++++
T Consensus 25 pP~DsIS~l~FSP~~~~---------------~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADN---------------LLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred CcccchheeEeccccCc---------------eEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEe
Confidence 44557888889884332 223345677788887764 2 24579999999999999999999
Q ss_pred EECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCC--CEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCC
Q 036953 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS--EILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAE 190 (792)
Q Consensus 113 GS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg--~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpd 190 (792)
|+.|+.+++||+.+++ +.++..|.++|..+.|-+ .. ..|+||+.|++||.||.+...++.++.....+.+++. .
T Consensus 90 g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~ 165 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--L 165 (347)
T ss_pred eccCCceEEEEccCCC-eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--c
Confidence 9999999999999995 667778999999999987 44 4899999999999999999999999988888887754 3
Q ss_pred CcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCccccC--CCceeeecCC--
Q 036953 191 GELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSS--DSSMTRATSP-- 260 (792)
Q Consensus 191 G~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~--d~~~~l~t~s-- 260 (792)
..+++++. +..|.+|+++.+.... ......-+-.+++|+..+|.+..++++- +..|+.. ...+..+...
T Consensus 166 ~pm~vVata~r~i~vynL~n~~te~-k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~ 244 (347)
T KOG0647|consen 166 YPMAVVATAERHIAVYNLENPPTEF-KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRST 244 (347)
T ss_pred CceeEEEecCCcEEEEEcCCCcchh-hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccC
Confidence 45677666 4459999997665332 1111223456889999988876654332 3334433 2223332222
Q ss_pred ----------CcccC-CCCceEEEEecCCCEEEEee----ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccc
Q 036953 261 ----------GYLRY-PPPAVFVANAQSGDHVSLAA----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIE 325 (792)
Q Consensus 261 ----------g~~~~-p~~~~~l~~~ssG~~~~l~s----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~ 325 (792)
+..+| |....++.++++|.+..+.. -+...+.|...|.++.|+.+|.++++...-|-..|-.--+
T Consensus 245 ~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n 324 (347)
T KOG0647|consen 245 NSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSKGHEGNN 324 (347)
T ss_pred CCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecccccccccCC
Confidence 12233 44456666666666644444 2334566899999999999999999777777766655444
Q ss_pred cc
Q 036953 326 PS 327 (792)
Q Consensus 326 ~s 327 (792)
|.
T Consensus 325 ~~ 326 (347)
T KOG0647|consen 325 PQ 326 (347)
T ss_pred CC
Confidence 44
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=167.56 Aligned_cols=218 Identities=17% Similarity=0.214 Sum_probs=172.6
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 95 PRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQT-GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 95 ~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~t-gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
.+.+..++|++ ..+.+++++.||.++|||+.. .+++..++.|...|.++.|++.+.+.+++++.|++||+||...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 57799999999 567899999999999999643 4578999999999999999998888999999999999999999999
Q ss_pred EEEe-ccCCCeeEEEEcCC-CcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC-ccc
Q 036953 173 IGSC-DFYRPIASIAFHAE-GELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN-DLD 248 (792)
Q Consensus 173 v~t~-~h~s~V~sVafSpd-G~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~-dLr 248 (792)
+.++ +|...|...+|+|. .+.|++++. +.+++||++.... ...+..|...|.++.|+.-..+++++++.+ -|+
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc---eeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence 9998 58899999999996 578888874 5599999988754 335677888999999999999999888743 334
Q ss_pred cCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccc
Q 036953 249 SSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSA 328 (792)
Q Consensus 249 s~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~ 328 (792)
.||-+.. ...+..+.+|..+|-.+.+||--.-++
T Consensus 217 ~wDir~~----------------------------r~pl~eL~gh~~AVRkvk~Sph~~~lL------------------ 250 (311)
T KOG0277|consen 217 GWDIRNL----------------------------RTPLFELNGHGLAVRKVKFSPHHASLL------------------ 250 (311)
T ss_pred EEehhhc----------------------------cccceeecCCceEEEEEecCcchhhHh------------------
Confidence 4332221 122333466999999999999876554
Q ss_pred cccccCCCCCccccccccccccCCCCCCCCCCcCCCCCCC
Q 036953 329 SLHLQSDSNVEQDGTVPSMETFPVIPPGREGSVNDSFPNG 368 (792)
Q Consensus 329 ~~q~~~~~sgs~D~tv~p~~~~~~~p~~~~~~~~~~~~~~ 368 (792)
.+.+||-|++-|+...+.--......|.-|--|
T Consensus 251 -------aSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g 283 (311)
T KOG0277|consen 251 -------ASASYDMTVRIWDPERQDSAIETVDHHTEFVCG 283 (311)
T ss_pred -------hhccccceEEecccccchhhhhhhhccceEEec
Confidence 179999999999976554334445555556444
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=165.08 Aligned_cols=207 Identities=17% Similarity=0.259 Sum_probs=171.7
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+.+|+++++.+.++.+|.+|++++.|.++.||-..+|+.+.++.||.+.|+++..+- +.++++||+.|.+++|||+++|
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCCC
Confidence 678999999999999999999999999999999989999999999999999999998 8999999999999999999999
Q ss_pred cEEEEeccCCCeeEEEEcCCCcEEEEEcCC------eEEEEECCCCCc---ccCC-eEEecCCCCeEEEEEccCCCeEEE
Q 036953 171 ECIGSCDFYRPIASIAFHAEGELLAVASGH------KLYIWPYNNKEE---ASSP-IIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 171 ~~v~t~~h~s~V~sVafSpdG~~LasgSdd------~V~IWDlrt~~~---~~~~-~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
+++.++....+|..+.|+++|++++.+.++ .|.++|++.... ..+| ..+..+.+.++.+-|.|-+++|++
T Consensus 85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA 164 (327)
T ss_pred cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence 999999999999999999999998887742 299999985431 1122 334457789999999999999988
Q ss_pred EEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCC
Q 036953 241 TAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSS 320 (792)
Q Consensus 241 S~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg 320 (792)
+.++..|..+| +.+|....- ....|...|.++.+++|..+++
T Consensus 165 Ghe~G~is~~d-----------------------a~~g~~~v~-----s~~~h~~~Ind~q~s~d~T~Fi---------- 206 (327)
T KOG0643|consen 165 GHEDGSISIYD-----------------------ARTGKELVD-----SDEEHSSKINDLQFSRDRTYFI---------- 206 (327)
T ss_pred ecCCCcEEEEE-----------------------cccCceeee-----chhhhccccccccccCCcceEE----------
Confidence 87766555433 333322111 1223778999999999999999
Q ss_pred CccccccccccccCCCCCccccccccccccCC
Q 036953 321 NMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 321 ~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
++|.|.|--.||.-.-
T Consensus 207 ----------------T~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 207 ----------------TGSKDTTAKLVDVRTL 222 (327)
T ss_pred ----------------ecccCccceeeeccce
Confidence 8888888887775443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-16 Score=181.89 Aligned_cols=194 Identities=11% Similarity=0.104 Sum_probs=141.8
Q ss_pred CCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------------CcCCCCCCeEEEEEcC
Q 036953 38 SPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------------PLVPPPRSTIAAAFSP 105 (792)
Q Consensus 38 s~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------------~L~gH~~~V~sLafSP 105 (792)
..+...+..+.|+|.. +..|++++.|++|++|+.... .+.+|...|.+++|+|
T Consensus 71 ~gH~~~V~~lafsP~~---------------~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P 135 (568)
T PTZ00420 71 KGHTSSILDLQFNPCF---------------SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP 135 (568)
T ss_pred cCCCCCEEEEEEcCCC---------------CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC
Confidence 3455667777777752 224566678888999987642 3568999999999999
Q ss_pred CCCE-EEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCee
Q 036953 106 DGRT-LASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIA 183 (792)
Q Consensus 106 DG~~-LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~ 183 (792)
++.. |++++.|++|+|||+.+++.+..+. |...|.+++|+| ++.+|++++.|++|++||+++++.+..+. |.+.+.
T Consensus 136 ~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~ 213 (568)
T PTZ00420 136 MNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN 213 (568)
T ss_pred CCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCce
Confidence 8875 5789999999999999998877776 667899999999 99999999999999999999999888774 655433
Q ss_pred -----EEEEcCCCcEEEEEc-CC----eEEEEECCCCCcccCCeEEec---CCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 184 -----SIAFHAEGELLAVAS-GH----KLYIWPYNNKEEASSPIIVLK---TRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 184 -----sVafSpdG~~LasgS-dd----~V~IWDlrt~~~~~~~~~~~~---h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
...|++++.+|++++ ++ .|+|||++..... ..... +...+...-..+++..++++.++..++.+
T Consensus 214 s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p---l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~ 290 (568)
T PTZ00420 214 TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA---LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYY 290 (568)
T ss_pred eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc---eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEE
Confidence 234568888888866 42 4999999865432 22222 23333344344457766666566666654
Q ss_pred C
Q 036953 251 D 251 (792)
Q Consensus 251 d 251 (792)
+
T Consensus 291 e 291 (568)
T PTZ00420 291 Q 291 (568)
T ss_pred E
Confidence 4
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=190.00 Aligned_cols=214 Identities=17% Similarity=0.241 Sum_probs=160.1
Q ss_pred cC-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--------------------------------C----------
Q 036953 91 LV-PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT--------------------------------G---------- 127 (792)
Q Consensus 91 L~-gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t--------------------------------g---------- 127 (792)
+. .|.+.|++|.||+||++||+|+.|+.|+||.+.. .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 44 8999999999999999999999999999998654 0
Q ss_pred ------------------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcC
Q 036953 128 ------------------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHA 189 (792)
Q Consensus 128 ------------------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSp 189 (792)
+++..|.||.+.|.++.|+. .++|++.+.|+|||||++...+|+..|.|.+.|+||+|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnP 419 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNP 419 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecc
Confidence 11235679999999999996 7899999999999999999999999999999999999999
Q ss_pred -CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc---ee----ee---
Q 036953 190 -EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS---MT----RA--- 257 (792)
Q Consensus 190 -dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~---~~----l~--- 257 (792)
|.+||++|+ |++|+||++...+.. ....-.+-|++++|.|||+..++++-....+.++.. +. +.
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv----~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVV----DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeE----eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 568999999 889999999877632 234455789999999999988877664443322211 10 11
Q ss_pred -------cCCCcccCCCCceEEEEecCCCEEEEeec--c---CcccCCC--ceEEEeEECCCCcEEE
Q 036953 258 -------TSPGYLRYPPPAVFVANAQSGDHVSLAAE--L---PLMSSLP--FLIVPSVSIDDSRIDL 310 (792)
Q Consensus 258 -------t~sg~~~~p~~~~~l~~~ssG~~~~l~s~--l---~~l~gh~--~~VwdV~~SpDGr~lv 310 (792)
...|.-.+|...-.+.+.+.+..+.+..+ . ..++|+. ..-..+.|+.||++|+
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV 562 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence 11222223333334455556666666664 2 2334432 3456788999999999
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-17 Score=170.37 Aligned_cols=271 Identities=17% Similarity=0.220 Sum_probs=193.8
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC----CCeEEEEeccC-------CCcCCCCCCeEEEEEcCCCC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE----AESLRHLSAKY-------CPLVPPPRSTIAAAFSPDGR 108 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~----d~sIrvWd~~t-------~~L~gH~~~V~sLafSPDG~ 108 (792)
+...+...+|+++|.++++|..+.++ +|+.... .....+....+ .+|..|.+.|+++.|+|...
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SI-----Kildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASI-----KILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceE-----EEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34456677899999988888544333 4443320 00011111111 14668999999999999999
Q ss_pred EEEEEECCCeEEEEECCCCcE---EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ccCCC
Q 036953 109 TLASTHGDHTVKIIDCQTGNC---LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC----DFYRP 181 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~tgk~---v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~----~h~s~ 181 (792)
.|++|+.|++|++||+..... .+.|+ ...+|.++.|+| .+.+|+.|..-.++++||+++-+|...- +|...
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 999999999999999864322 23333 456899999999 9999999999999999999999887664 58899
Q ss_pred eeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCccccCCCcee
Q 036953 182 IASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSSDSSMT 255 (792)
Q Consensus 182 V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~d~~~~ 255 (792)
|+++.+++.|++.++++ |+.|+|||--..+++. ..........|.+..|..+|+++++++. +|+|.++-....
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~-t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR-TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHH-HHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 99999999999999999 5559999988877664 1111224568999999999999998887 444444333222
Q ss_pred eecC-----------------CCcccCCC---CceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEcccc
Q 036953 256 RATS-----------------PGYLRYPP---PAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASR 315 (792)
Q Consensus 256 l~t~-----------------sg~~~~p~---~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~ 315 (792)
+... ..|.-+|. ..++.|++..++.+.+.. -+|.+.+-.+..||.+--++
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s-----lgHn~a~R~i~HSP~~p~Fm----- 412 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS-----LGHNGAVRWIVHSPVEPAFM----- 412 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc-----cCCCCCceEEEeCCCCCcee-----
Confidence 2111 11222332 356677766666555544 35999999999999999888
Q ss_pred ccCCCCccccccccccccCCCCCccccccccccc
Q 036953 316 RASSSNMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 316 ~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
+++-|..++.|.-
T Consensus 413 ---------------------TcsdD~raRFWyr 425 (430)
T KOG0640|consen 413 ---------------------TCSDDFRARFWYR 425 (430)
T ss_pred ---------------------eecccceeeeeee
Confidence 7788888777763
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=174.12 Aligned_cols=182 Identities=18% Similarity=0.282 Sum_probs=151.8
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC------------cCCCCCCeEEEEEcCCCCEE
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP------------LVPPPRSTIAAAFSPDGRTL 110 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~------------L~gH~~~V~sLafSPDG~~L 110 (792)
++.+..|+|++.++.+| +.|+-|.+|+..+++ +.-+.++|.|+.||.|...|
T Consensus 215 h~EcA~FSPDgqyLvsg----------------SvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMl 278 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSG----------------SVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEML 278 (508)
T ss_pred chhheeeCCCCceEeec----------------cccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHh
Confidence 56677788887765555 566777777776553 33478899999999999999
Q ss_pred EEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEc
Q 036953 111 ASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFH 188 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafS 188 (792)
++|+.||.|++|.+.+|.|++.|. +|...|+++.|+. |+..+++++.|.++++--++.|++++.+ +|.+.|+...|.
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 999999999999999999999998 8999999999999 8899999999999999999999999998 599999999999
Q ss_pred CCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 189 AEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 189 pdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+||..+++++ |++|++|+.++.++.. .....+..-+|+++..-|....-++.|
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~-Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLS-TFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhh-hccCCCCcccceeEEEcCCCCceEEEE
Confidence 9999999988 5569999999988765 223344667888888888665433333
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-16 Score=163.22 Aligned_cols=231 Identities=13% Similarity=0.147 Sum_probs=182.4
Q ss_pred CCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCcEEEEec
Q 036953 61 SDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGR--TLASTHGDHTVKIIDCQTGNCLKVLS 134 (792)
Q Consensus 61 ~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~--~LaSGS~DGtVrIWDl~tgk~v~~L~ 134 (792)
...++.-.+..+++++.|.+|++||.... .+..|.+.|+++.|.++.. .|++|+.||.|.+|+....+++..++
T Consensus 45 sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK 124 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK 124 (362)
T ss_pred ceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec
Confidence 34445567788999999999999999755 5678999999999999665 99999999999999999999999999
Q ss_pred CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCccc
Q 036953 135 GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEAS 214 (792)
Q Consensus 135 gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~ 214 (792)
+|.+.|+.++.|| .+++.++.+.|+.+++||+-+|+.-...........+.|+|.|.+|+....++|-||.+.......
T Consensus 125 ~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~ 203 (362)
T KOG0294|consen 125 AHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFR 203 (362)
T ss_pred ccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhh
Confidence 9999999999999 999999999999999999999887766665556666999999999999998999999998776432
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCC
Q 036953 215 SPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLP 294 (792)
Q Consensus 215 ~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~ 294 (792)
.......+.++.|-- +..+++++.+ ..+.+++..++..... +..|+
T Consensus 204 ----~i~~~~r~l~~~~l~-~~~L~vG~d~-----------------------~~i~~~D~ds~~~~~~------~~AH~ 249 (362)
T KOG0294|consen 204 ----EIENPKRILCATFLD-GSELLVGGDN-----------------------EWISLKDTDSDTPLTE------FLAHE 249 (362)
T ss_pred ----hhhccccceeeeecC-CceEEEecCC-----------------------ceEEEeccCCCcccee------eecch
Confidence 111224466777754 3335444432 2344455444333333 33489
Q ss_pred ceEEEeE--ECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 295 FLIVPSV--SIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 295 ~~VwdV~--~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
.+|-+++ ..|++.+|+ +.|.|..|.-||+--.
T Consensus 250 ~RVK~i~~~~~~~~~~lv--------------------------TaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 250 NRVKDIASYTNPEHEYLV--------------------------TASSDGFIKVWDIDME 283 (362)
T ss_pred hheeeeEEEecCCceEEE--------------------------EeccCceEEEEEcccc
Confidence 9998887 357899999 8899999999998766
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-16 Score=178.94 Aligned_cols=245 Identities=17% Similarity=0.198 Sum_probs=188.5
Q ss_pred CcEEEEEeCCCeEEEEeccCC-----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC-----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~-----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
+..+.+...+.+|++|+...+ .+.+|.+.|.++++..-+.+|++|+.|.++++||+.+|+|..++.+|...|.++
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL 297 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence 567888899999999998765 488999999999998778899999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEec
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLK 221 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~ 221 (792)
...+ .++++|+.|.+|++|++.++.++..+. |..+|+++..+ +.++++++ ++.|++||..+.+... ...+
T Consensus 298 ~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---sl~g 369 (537)
T KOG0274|consen 298 TIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---SLSG 369 (537)
T ss_pred EccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee---eecC
Confidence 8865 788999999999999999999999997 99999999987 77888888 5569999999888654 6677
Q ss_pred CCCCeEEEEEccCCCeEEEEEeeCccccCCCc------eeeecCCCc------------ccCCCCceEEEEecCCCEEEE
Q 036953 222 TRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS------MTRATSPGY------------LRYPPPAVFVANAQSGDHVSL 283 (792)
Q Consensus 222 h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~------~~l~t~sg~------------~~~p~~~~~l~~~ssG~~~~l 283 (792)
|...|+++.+... ..++.++-+..|+.||.. ..+...... .......+.+|+..++.++..
T Consensus 370 H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 370 HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRT 448 (537)
T ss_pred CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeee
Confidence 9999999988765 545544444445555433 222222111 111234567777777777555
Q ss_pred eeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 284 AAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 284 ~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
..+. |.+.|+.+.+. + ..++ .++.|+++.-||.-.+.+.
T Consensus 449 ~~~~-----~~~~v~~l~~~-~-~~il--------------------------~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 449 LEGR-----HVGGVSALALG-K-EEIL--------------------------CSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred eccC-----CcccEEEeecC-c-ceEE--------------------------EEecCCeeEEEecccCchh
Confidence 5432 45667766666 2 2333 4778888888887777443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=162.37 Aligned_cols=234 Identities=18% Similarity=0.249 Sum_probs=187.9
Q ss_pred CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE--EecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK--VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~--~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
..+.+|...|.+++|+.+|.+|++|+.|+++++|++...+... ...+|.+.|-.++|+|.+.+++++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3467889999999999999999999999999999998765433 34689999999999998999999999999999999
Q ss_pred CCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 167 ANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 167 l~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
++.++++..+.....-.-+.|+|+|+++++++ ++.|.+.|.++.+... .......++.+.|+-+++.++++.+..
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN----EEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee----hhcccceeeeeeecCCCCEEEEecCCc
Confidence 99999999998777777899999999999998 6669999998877432 233455678899998888888888877
Q ss_pred ccccCCCc-----eeeecCC-C--cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEEEc
Q 036953 246 DLDSSDSS-----MTRATSP-G--YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDLQH 312 (792)
Q Consensus 246 dLrs~d~~-----~~l~t~s-g--~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv~~ 312 (792)
.+...... ..++... + +..+.+...+|+.++.+-...|+. .+..+.-+...|--+.||-||++|+
T Consensus 170 ~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA-- 247 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA-- 247 (313)
T ss_pred eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee--
Confidence 66533222 2222221 1 455667778888888777777776 4456777889999999999999999
Q ss_pred cccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 313 ASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 313 ~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
++|.|..|---++-.|
T Consensus 248 ------------------------SaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 248 ------------------------SASEDHFIDIAEVETG 263 (313)
T ss_pred ------------------------ccCccceEEeEecccC
Confidence 7888888876666555
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=174.37 Aligned_cols=184 Identities=18% Similarity=0.235 Sum_probs=151.1
Q ss_pred CceeecCCcEEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC--CC
Q 036953 62 DSSVRDAKRGLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQ--TG 127 (792)
Q Consensus 62 a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~--tg 127 (792)
..+-....+.+++++.|.++.+||+... .+.+|.+.|..++|++ +...|++++.|+.+.|||++ +.
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 3444456778999999999999998633 2568999999999999 77889999999999999999 56
Q ss_pred cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-ccCCCeeEEEEcCCCc-EEEEEc-CCeEE
Q 036953 128 NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSC-DFYRPIASIAFHAEGE-LLAVAS-GHKLY 203 (792)
Q Consensus 128 k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~-~h~s~V~sVafSpdG~-~LasgS-dd~V~ 203 (792)
++.....+|.+.|.+++|+|.++.+||||+.|++|+|||+|+. +++.++ .|...|.+|.|+|... .|++++ |+.+.
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN 342 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence 6777888999999999999999999999999999999999984 566666 5999999999999875 566655 55699
Q ss_pred EEECCCCCccc----------CC-eEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 204 IWPYNNKEEAS----------SP-IIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 204 IWDlrt~~~~~----------~~-~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
|||+.+-...+ ++ ....+|...|..+.|+|+...++++...+
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD 395 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED 395 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC
Confidence 99997654322 11 22335889999999999999988877633
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=161.06 Aligned_cols=205 Identities=17% Similarity=0.199 Sum_probs=166.3
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
.+..|.++|..+.|+-||++.++++.|++|++|+...+.+++++.+|...|..++.+. |...+++|+.|+.|.+||+++
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEccc
Confidence 3567899999999999999999999999999999999999999999999999999998 889999999999999999999
Q ss_pred CcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 170 SECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 170 g~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
|+.++.| .|...|+.+.|+.+...+++++ |.++++||.+...... ...+....+.|.++..+ +..|++.+-+..+
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-iQildea~D~V~Si~v~--~heIvaGS~DGtv 167 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-IQILDEAKDGVSSIDVA--EHEIVAGSVDGTV 167 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc-cchhhhhcCceeEEEec--ccEEEeeccCCcE
Confidence 9999999 4999999999999999999999 6669999998876543 22344467889999886 3445655556666
Q ss_pred ccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccccc
Q 036953 248 DSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPS 327 (792)
Q Consensus 248 rs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s 327 (792)
+..+.++-.- .+ ......|.++.||+||...+
T Consensus 168 RtydiR~G~l------------------~s-------------Dy~g~pit~vs~s~d~nc~L----------------- 199 (307)
T KOG0316|consen 168 RTYDIRKGTL------------------SS-------------DYFGHPITSVSFSKDGNCSL----------------- 199 (307)
T ss_pred EEEEeeccee------------------eh-------------hhcCCcceeEEecCCCCEEE-----------------
Confidence 6544322110 00 01234678899999999888
Q ss_pred ccccccCCCCCccccccccccccCCCCC
Q 036953 328 ASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 328 ~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
.++-|.|+...|...|+--
T Consensus 200 ---------a~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 200 ---------ASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred ---------EeeccceeeecccchhHHH
Confidence 6778888888887777543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-17 Score=170.82 Aligned_cols=229 Identities=17% Similarity=0.221 Sum_probs=177.8
Q ss_pred cCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc---EEEEecCCCCC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN---CLKVLSGHRRT 139 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk---~v~~L~gH~~~ 139 (792)
-....+++++.|.++++||..++ .+..|.+.|..+.|+ ..++++++.|.++.+||+.... +.+++.||...
T Consensus 245 yd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 245 YDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred ccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 34557889999999999999987 467899999999997 5689999999999999997654 34677899999
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCe
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPI 217 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~ 217 (792)
|..+.|+ .+++++++.|.+|++|++.+++++.++ +|...|.|+.+ .|+++++|+ |.+|++||+..+....
T Consensus 323 VNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR--- 394 (499)
T KOG0281|consen 323 VNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR--- 394 (499)
T ss_pred eeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHH---
Confidence 9999995 479999999999999999999999998 58899988887 588999988 5669999999998765
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceE
Q 036953 218 IVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLI 297 (792)
Q Consensus 218 ~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~V 297 (792)
...+|++-|.++.|+ .+.+++++.+..++.|+....+.... + .+.- .+..+..|.++|
T Consensus 395 vLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra-----~---------~~~~------Cl~~lv~hsgRV 452 (499)
T KOG0281|consen 395 VLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRA-----P---------ASTL------CLRTLVEHSGRV 452 (499)
T ss_pred HHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcc-----c---------ccch------HHHhhhhcccee
Confidence 567899999999996 56688877777777766443332100 0 0000 112233477777
Q ss_pred EEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 298 VPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 298 wdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
..+-|.. .-|+ +.+.|.||--||-.-+.|.
T Consensus 453 FrLQFD~--fqIv--------------------------sssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 453 FRLQFDE--FQII--------------------------SSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EEEeecc--eEEE--------------------------eccCCCeEEEEEcCCCCcc
Confidence 7777743 3344 6789999999995555433
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=173.18 Aligned_cols=225 Identities=13% Similarity=0.145 Sum_probs=175.5
Q ss_pred EEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
.+.+++.|..|++|+.... .|.+..+.|+.+.|.++++++++.+.|+.+++|+++..+...+|.+|++.|+++.
T Consensus 189 tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak 268 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAK 268 (459)
T ss_pred hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeeh
Confidence 4445567778888887533 4667788899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTR 223 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~ 223 (792)
|.. ....+++|+.|.+||+||+....|.+++-..+.+..|..+ ...++++- |.+|++||.+...... .....
T Consensus 269 ~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~----sv~~g 341 (459)
T KOG0288|consen 269 FKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR----SVPLG 341 (459)
T ss_pred hhc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceee----EeecC
Confidence 987 4445999999999999999999999998888888888765 34455554 5559999999887543 33445
Q ss_pred CCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEEC
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSI 303 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~S 303 (792)
+.|+++..++++..+++++.++.+..-|.+ .-..++.++.....-++. ...+.||
T Consensus 342 g~vtSl~ls~~g~~lLsssRDdtl~viDlR-----------------------t~eI~~~~sA~g~k~asD--wtrvvfS 396 (459)
T KOG0288|consen 342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLR-----------------------TKEIRQTFSAEGFKCASD--WTRVVFS 396 (459)
T ss_pred cceeeEeeccCCeEEeeecCCCceeeeecc-----------------------cccEEEEeeccccccccc--cceeEEC
Confidence 589999999999999988777655543222 111222333222222122 5568999
Q ss_pred CCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 304 DDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 304 pDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
|||+|++ +||-|+.|--|+++.|-
T Consensus 397 pd~~Yva--------------------------AGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 397 PDGSYVA--------------------------AGSADGSVYIWSVFTGK 420 (459)
T ss_pred CCCceee--------------------------eccCCCcEEEEEccCce
Confidence 9999999 89999999999999983
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-16 Score=166.75 Aligned_cols=230 Identities=18% Similarity=0.228 Sum_probs=179.9
Q ss_pred cCCcEEEEEeCCCeEEEEeccCC---CcCCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCcE----EEEecCC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYC---PLVPPPRSTIAAAFSP---DGRTLASTHGDHTVKIIDCQTGNC----LKVLSGH 136 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~---~L~gH~~~V~sLafSP---DG~~LaSGS~DGtVrIWDl~tgk~----v~~L~gH 136 (792)
.....|++++.|+.+++|+.+.. ++.||.+.|.+++|-- ....|++++.|.++++|..+.++. +..-.||
T Consensus 113 ~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH 192 (423)
T KOG0313|consen 113 GASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGH 192 (423)
T ss_pred ccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccc
Confidence 34678999999999999998744 6789999999888754 234699999999999999876643 3344599
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-------------------------CcEEEEe-ccCCCeeEEEEcCC
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-------------------------SECIGSC-DFYRPIASIAFHAE 190 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-------------------------g~~v~t~-~h~s~V~sVafSpd 190 (792)
.+.|.++...+ ++..+++++.|.+|++|+..+ +.++.++ +|..+|.++.|++
T Consensus 193 k~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d- 270 (423)
T KOG0313|consen 193 KRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD- 270 (423)
T ss_pred ccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-
Confidence 99999999999 999999999999999999321 2344444 5889999999998
Q ss_pred CcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCc
Q 036953 191 GELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPA 269 (792)
Q Consensus 191 G~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~ 269 (792)
...+++++ |++|+.||+.+++... .......++++..+|..+.|++++.+..++.+|.+..
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~----~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~-------------- 332 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKS----TLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG-------------- 332 (423)
T ss_pred CCceEeecccceEEEEEeeccccee----eeecCcceeEeecccccceeeecCCCCceeecCCCCC--------------
Confidence 55667777 8889999999998643 4456778999999998887777777777776665432
Q ss_pred eEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccc
Q 036953 270 VFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 270 ~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
+|.... ..+.+|..+|..+.++|...+.+ .+++||+|+.-||+
T Consensus 333 -------~gs~v~-----~s~~gH~nwVssvkwsp~~~~~~-------------------------~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 333 -------DGSVVS-----QSLIGHKNWVSSVKWSPTNEFQL-------------------------VSGSYDNTVKLWDV 375 (423)
T ss_pred -------CCceeE-----EeeecchhhhhheecCCCCceEE-------------------------EEEecCCeEEEEEe
Confidence 111111 12446999999999999988766 27999999999998
Q ss_pred cCCC
Q 036953 350 FPVI 353 (792)
Q Consensus 350 ~~~~ 353 (792)
-.--
T Consensus 376 RS~k 379 (423)
T KOG0313|consen 376 RSTK 379 (423)
T ss_pred ccCC
Confidence 7664
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=168.67 Aligned_cols=234 Identities=18% Similarity=0.203 Sum_probs=177.5
Q ss_pred eecccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEc
Q 036953 29 SRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFS 104 (792)
Q Consensus 29 ~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafS 104 (792)
|+..+.-.+...-..+..+.|+|.... ++++ .....+.+++..+. ++....+.|+++.|-
T Consensus 14 w~~~~~~~~~ke~~~vssl~fsp~~P~------d~aV----------t~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR 77 (487)
T KOG0310|consen 14 WRQETFPPVHKEHNSVSSLCFSPKHPY------DFAV----------TSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFR 77 (487)
T ss_pred hhhhcccccccccCcceeEecCCCCCC------ceEE----------ecccEEEEEecchhhhhhhHHhhccceeEEEee
Confidence 444333333334456888888886542 1111 11223444544433 244567889999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCee
Q 036953 105 PDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIA 183 (792)
Q Consensus 105 PDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~ 183 (792)
.||+.|+.|...|.|+|||+.+...++.+.+|+.+|..+.|+|+++..+++|++|+.+++||+.++..+..+ .|++.|.
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence 999999999999999999988777888999999999999999999999999999999999999998865444 6999999
Q ss_pred EEEEcCCCc-EEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCC
Q 036953 184 SIAFHAEGE-LLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPG 261 (792)
Q Consensus 184 sVafSpdG~-~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg 261 (792)
+.+|+|... ++++|+ |++|++||++.... ....+.|..+|..+.|-|.|..++++++
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~elnhg~pVe~vl~lpsgs~iasAgG------------------ 216 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVELNHGCPVESVLALPSGSLIASAGG------------------ 216 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEecCCCceeeEEEcCCCCEEEEcCC------------------
Confidence 999999765 777777 67799999998862 3466789999999999999996665553
Q ss_pred cccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 262 YLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 262 ~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+..++|+...|.... ..+..|.-.|.++++..+++-|+
T Consensus 217 ------n~vkVWDl~~G~qll-----~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 217 ------NSVKVWDLTTGGQLL-----TSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred ------CeEEEEEecCCceeh-----hhhhcccceEEEEEeecCCceEe
Confidence 356777766554411 12333888999999999998888
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.2e-16 Score=169.16 Aligned_cols=223 Identities=17% Similarity=0.206 Sum_probs=164.8
Q ss_pred CcEEEEEeCCCeEEEEeccCC--------------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc-----
Q 036953 69 KRGLVSWVEAESLRHLSAKYC--------------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN----- 128 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~--------------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk----- 128 (792)
...+.+....+.+.+||..+. .|.+|.+.-+++.|++ ..-.|++++.|++|++||++...
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence 344555566677777776421 4678999888999999 55689999999999999997532
Q ss_pred --EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC--CcEEEEe-ccCCCeeEEEEcCCC-cEEEEEc-CCe
Q 036953 129 --CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT--SECIGSC-DFYRPIASIAFHAEG-ELLAVAS-GHK 201 (792)
Q Consensus 129 --~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t--g~~v~t~-~h~s~V~sVafSpdG-~~LasgS-dd~ 201 (792)
....|.+|...|..++|++.+.+++++++.|+.+.|||+|+ .++.... .|.+.+++++|+|-+ ..||+++ |++
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 35678899999999999999999999999999999999995 4444444 589999999999965 5778888 556
Q ss_pred EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-eCccccCCCceeeecCC--CcccCCCCceEEEEecCC
Q 036953 202 LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDLDSSDSSMTRATSP--GYLRYPPPAVFVANAQSG 278 (792)
Q Consensus 202 V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dLrs~d~~~~l~t~s--g~~~~p~~~~~l~~~ssG 278 (792)
|.+||+|+.... +..+..|.+.|.+|.|+|+...++++++ +..+..||....-.... ....-|++.+|
T Consensus 297 V~LwDlRnL~~~--lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF------- 367 (422)
T KOG0264|consen 297 VALWDLRNLNKP--LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF------- 367 (422)
T ss_pred EEEeechhcccC--ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE-------
Confidence 999999988763 4667789999999999999998888777 33333443221111110 01111222222
Q ss_pred CEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 279 DHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 279 ~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
++.||...|.+..+.|+--+.+
T Consensus 368 ----------~HgGH~~kV~DfsWnp~ePW~I 389 (422)
T KOG0264|consen 368 ----------IHGGHTAKVSDFSWNPNEPWTI 389 (422)
T ss_pred ----------EecCcccccccccCCCCCCeEE
Confidence 2456888888888888876665
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-16 Score=163.64 Aligned_cols=209 Identities=17% Similarity=0.211 Sum_probs=165.5
Q ss_pred CCCCCCceEeeecccceeeC-----------CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEecc
Q 036953 19 NHLRRRARNVSRLLAHREIS-----------PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAK 87 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels-----------~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~ 87 (792)
+....+++.||+-...+..+ .....|.++.|+.+..++++| +.|+.|++|.+.
T Consensus 230 sgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG----------------sqDGkIKvWri~ 293 (508)
T KOG0275|consen 230 SGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG----------------SQDGKIKVWRIE 293 (508)
T ss_pred eccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc----------------CcCCcEEEEEEe
Confidence 44567899999876554322 344568888888888777666 578888999888
Q ss_pred CCC----c-CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeE
Q 036953 88 YCP----L-VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162 (792)
Q Consensus 88 t~~----L-~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtV 162 (792)
+++ + ..|..+|+|+.||.|+..+++++.|.+++|.-+.+|++++.|.||...|+...|++ ++..+++++.||+|
T Consensus 294 tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 294 TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTV 372 (508)
T ss_pred cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccE
Confidence 874 3 37999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEEECCCCcEEEEec---cCCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe
Q 036953 163 RLWDANTSECIGSCD---FYRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP 237 (792)
Q Consensus 163 rLWDl~tg~~v~t~~---h~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~ 237 (792)
++|+.++.+|+.+|. ..-+|+++..-|.. ..++++. .++|+|.++...-... ...-....+...+.+.+|.|.+
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs-fsSGkREgGdFi~~~lSpkGew 451 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS-FSSGKREGGDFINAILSPKGEW 451 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee-eccCCccCCceEEEEecCCCcE
Confidence 999999999999985 45578888877765 5666666 5669999986543211 0011112344556679999998
Q ss_pred EEEEEeeC
Q 036953 238 FVLTAEVN 245 (792)
Q Consensus 238 LlaS~s~~ 245 (792)
+.+.+.+.
T Consensus 452 iYcigED~ 459 (508)
T KOG0275|consen 452 IYCIGEDG 459 (508)
T ss_pred EEEEccCc
Confidence 88777654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-15 Score=163.13 Aligned_cols=199 Identities=19% Similarity=0.309 Sum_probs=160.5
Q ss_pred eEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCe
Q 036953 26 RNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRST 98 (792)
Q Consensus 26 r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V 98 (792)
.-+|+-...+.+. .+++.++.+.++++.. .+.+.+.|..|++|..... ....|..+|
T Consensus 243 av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~----------------~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V 306 (506)
T KOG0289|consen 243 AVLFDKPSNQILATLKGHTKKITSVKFHKDLD----------------TVITASADEIIRVWSVPLSSEPTSSRPHEEPV 306 (506)
T ss_pred eEEEecchhhhhhhccCcceEEEEEEeccchh----------------heeecCCcceEEeeccccccCccccccccccc
Confidence 3455555554444 4555666666666644 3455577888899987643 357899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC--CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG--HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 99 ~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g--H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
+.+..+|.|.+|++++.|+...+.|+.++.++.+... ..-.+++.+||| |+.+|.+|..|+.|++||+..+..+..|
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccC
Confidence 9999999999999999999999999999998776653 223589999999 9999999999999999999999888888
Q ss_pred -ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 177 -DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 177 -~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.|.++|..++|+.+|-+|+++.++. |++||+|+.+..+ .........+.++.|.+.|.++++.+.
T Consensus 386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k--t~~l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK--TIQLDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc--eeeccccccceeEEEcCCCCeEEeecc
Confidence 5999999999999999999999776 9999999887543 333344457999999999999888765
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.6e-16 Score=177.05 Aligned_cols=175 Identities=18% Similarity=0.235 Sum_probs=152.9
Q ss_pred cCCcEEEEEeCCCeEEEEeccC---C----CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKY---C----PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR 138 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t---~----~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~ 138 (792)
..+..|++++..+.|-+||+.. + -+..|.+.++++.|++ ...+|++|+.||+|++||++..+...++.+...
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE 177 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE 177 (839)
T ss_pred chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence 4567789999999999999976 3 2568999999999999 778999999999999999999988888989999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccC
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASS 215 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~ 215 (792)
.|++|.|+|..+.+++++.+.|.+++||++.. ++...+ .|.++|.++.|||++.+||+|+.|+ |+|||....+..
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-- 255 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-- 255 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc--
Confidence 99999999988999999999999999999974 555555 5999999999999999999999555 999999876543
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 216 PIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 216 ~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+........+|..|+|-|...+.+++++
T Consensus 256 ~~~tInTiapv~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 256 PKHTINTIAPVGRVKWRPARSYHLATCS 283 (839)
T ss_pred ceeEEeecceeeeeeeccCccchhhhhh
Confidence 3455567789999999999999998887
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-16 Score=166.98 Aligned_cols=209 Identities=18% Similarity=0.188 Sum_probs=167.8
Q ss_pred cEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf 145 (792)
..++..+.|+.+++|+.... +|.+|.+.|+++.|......+++|+.|.+|++||+....|.+++. -...+.+|+.
T Consensus 232 ~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~ 310 (459)
T KOG0288|consen 232 KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVC 310 (459)
T ss_pred ceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEe
Confidence 34566678899999998755 678999999999999877779999999999999999988877765 3345667777
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEE--ecC
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIV--LKT 222 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~--~~h 222 (792)
++ ..++++-.|++|++||.++..++......+.|+++..+++|..|.+++ |+.+.+.|+++.+... +..- ...
T Consensus 311 ~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~-~~sA~g~k~ 386 (459)
T KOG0288|consen 311 SI---SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ-TFSAEGFKC 386 (459)
T ss_pred cc---eeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEE-Eeecccccc
Confidence 54 678999999999999999999999998888999999999999888888 7779999999887443 1111 123
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEE
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVS 302 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~ 302 (792)
...++.+.|+|++.|+++++.+ ..+++|....|++...... .+....|.++.|
T Consensus 387 asDwtrvvfSpd~~YvaAGS~d-----------------------gsv~iW~v~tgKlE~~l~~----s~s~~aI~s~~W 439 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAAGSAD-----------------------GSVYIWSVFTGKLEKVLSL----STSNAAITSLSW 439 (459)
T ss_pred ccccceeEECCCCceeeeccCC-----------------------CcEEEEEccCceEEEEecc----CCCCcceEEEEE
Confidence 3448899999999988776644 3678888888888655552 222338999999
Q ss_pred CCCCcEEE
Q 036953 303 IDDSRIDL 310 (792)
Q Consensus 303 SpDGr~lv 310 (792)
+|.|+.++
T Consensus 440 ~~sG~~Ll 447 (459)
T KOG0288|consen 440 NPSGSGLL 447 (459)
T ss_pred cCCCchhh
Confidence 99999999
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=172.99 Aligned_cols=180 Identities=19% Similarity=0.312 Sum_probs=157.6
Q ss_pred CcEEEEEeCCCeEEEEeccCC----------------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC----------------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV 132 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~----------------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~ 132 (792)
+..+++++.|++++.|+.+.- +.....+.|.|+.+||||++|+++--|.+|+||-+++-+....
T Consensus 466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfls 545 (888)
T KOG0306|consen 466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS 545 (888)
T ss_pred CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeee
Confidence 445677788888888886411 1234567899999999999999999999999999999999999
Q ss_pred ecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCC
Q 036953 133 LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNK 210 (792)
Q Consensus 133 L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~ 210 (792)
+.||.-+|.++..+| |+++++|||.|+.|++|-+.=|.|-+.+ .|.+.|.++.|-|+...+.+++ +++|+-||-.+.
T Consensus 546 LYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 546 LYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred ecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh
Confidence 999999999999999 9999999999999999999999998886 6999999999999999999998 556999999888
Q ss_pred CcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 211 EEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 211 ~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
+.+. ...+|...|++++..|+|.++++++.+..|+.|..
T Consensus 625 e~iq---~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 625 EEIQ---KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred hhhe---eeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 7654 67789999999999999998888888888887654
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-16 Score=174.40 Aligned_cols=210 Identities=17% Similarity=0.198 Sum_probs=170.8
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--cEEEEecC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG--NCLKVLSG 135 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg--k~v~~L~g 135 (792)
.+..+++++.|+.|+.|+..+. .+..|.+.|+.++...+++.|+++|.|-+|++|+...+ -++.++..
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~ 115 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT 115 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc
Confidence 4557999999999999987532 45679999999999999999999999999999999877 57888899
Q ss_pred CCCCcEEEEE-ccCCCCEEEEEeCCCeEEEEECCCC--cEEEEe----------ccCCCeeEEEEcCCCcEEEEEcCCe-
Q 036953 136 HRRTPWVVRF-HPLRSEILASGSLDHEVRLWDANTS--ECIGSC----------DFYRPIASIAFHAEGELLAVASGHK- 201 (792)
Q Consensus 136 H~~~VtsVaf-SP~dg~lLaSgS~DgtVrLWDl~tg--~~v~t~----------~h~s~V~sVafSpdG~~LasgSdd~- 201 (792)
|...|.|+++ .+ +..+++|||.|+.|.+||++++ +.+..+ ++...|++++.++.|..|+.|+-.+
T Consensus 116 H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 116 HKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred ccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 9999999999 65 8899999999999999999987 233222 3567899999999998888888444
Q ss_pred EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEE
Q 036953 202 LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHV 281 (792)
Q Consensus 202 V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~ 281 (792)
|++||.++.+... .+.+|.+.|..+..++||..+++++++..|+ +|+....+|+
T Consensus 195 lr~wDprt~~kim---kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIr-----------------------lWdLgqQrCl 248 (735)
T KOG0308|consen 195 LRLWDPRTCKKIM---KLRGHTDNVRVLLVNDDGTRLLSASSDGTIR-----------------------LWDLGQQRCL 248 (735)
T ss_pred eEEecccccccee---eeeccccceEEEEEcCCCCeEeecCCCceEE-----------------------eeecccccee
Confidence 9999999988643 4568999999999999999999988776444 4554455554
Q ss_pred EEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 282 SLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 282 ~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
..... |.-.||....+|+=..++
T Consensus 249 ~T~~v------H~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 249 ATYIV------HKEGVWALQSSPSFTHVY 271 (735)
T ss_pred eeEEe------ccCceEEEeeCCCcceEE
Confidence 44331 666688888887766666
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-14 Score=145.46 Aligned_cols=236 Identities=20% Similarity=0.303 Sum_probs=174.2
Q ss_pred CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEec--cCCC-------cCCCCCCeEEEEEcC----CC
Q 036953 41 TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSA--KYCP-------LVPPPRSTIAAAFSP----DG 107 (792)
Q Consensus 41 tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~--~t~~-------L~gH~~~V~sLafSP----DG 107 (792)
...+.+.+|+|++.++++| +.|++|++... .+++ +.-|.+.|..++|-. .+
T Consensus 89 kgsiyc~~ws~~geliatg----------------sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~ 152 (350)
T KOG0641|consen 89 KGSIYCTAWSPCGELIATG----------------SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGG 152 (350)
T ss_pred CccEEEEEecCccCeEEec----------------CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCc
Confidence 3467888999998887777 56677766544 3443 345788999999975 34
Q ss_pred CEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEE-EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---c----
Q 036953 108 RTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVV-RFHPLRSEILASGSLDHEVRLWDANTSECIGSCD---F---- 178 (792)
Q Consensus 108 ~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsV-afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~---h---- 178 (792)
..|++++ .|..|++-|..+|+..+.+.+|.+-|..+ .| ++-.+++|+.|++|++||++-..++.+++ +
T Consensus 153 ~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 153 AILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL 229 (350)
T ss_pred eEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence 5677665 47788888999999999999999998876 34 46899999999999999999999998874 1
Q ss_pred -CCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceee
Q 036953 179 -YRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTR 256 (792)
Q Consensus 179 -~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l 256 (792)
.+.|.+++..|.|++|+++-.+. ..+||++.++.++ ....|...|.+|.|+|...++++++.+..|+ +
T Consensus 230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq---~f~phsadir~vrfsp~a~yllt~syd~~ik-------l 299 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ---RFHPHSADIRCVRFSPGAHYLLTCSYDMKIK-------L 299 (350)
T ss_pred ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee---eeCCCccceeEEEeCCCceEEEEecccceEE-------E
Confidence 35799999999999999998544 9999999988654 6677999999999999877766655444333 3
Q ss_pred ecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCC
Q 036953 257 ATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDS 336 (792)
Q Consensus 257 ~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~ 336 (792)
....|.....-+.. ++..|...+..+.+.|+.-.++
T Consensus 300 tdlqgdla~el~~~------------------vv~ehkdk~i~~rwh~~d~sfi-------------------------- 335 (350)
T KOG0641|consen 300 TDLQGDLAHELPIM------------------VVAEHKDKAIQCRWHPQDFSFI-------------------------- 335 (350)
T ss_pred eecccchhhcCceE------------------EEEeccCceEEEEecCccceee--------------------------
Confidence 33333222111111 1122666677777777776666
Q ss_pred CCccccccccccc
Q 036953 337 NVEQDGTVPSMET 349 (792)
Q Consensus 337 sgs~D~tv~p~~~ 349 (792)
+.|.|+|++.|..
T Consensus 336 sssadkt~tlwa~ 348 (350)
T KOG0641|consen 336 SSSADKTATLWAL 348 (350)
T ss_pred eccCcceEEEecc
Confidence 6788999988864
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=164.15 Aligned_cols=186 Identities=18% Similarity=0.302 Sum_probs=147.4
Q ss_pred CcEEEEEeCCCeEEEEeccC--------------------CCcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q 036953 69 KRGLVSWVEAESLRHLSAKY--------------------CPLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG 127 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t--------------------~~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg 127 (792)
.....+|++.+.+++|+... -++.+|...-+.++||| ....|++|..-+.|++|...++
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 33456667777777777631 03568999999999999 4446899999999999998886
Q ss_pred cE---EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC---cEEEEeccCCCeeEEEEcCCCcEEEEEcCCe
Q 036953 128 NC---LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS---ECIGSCDFYRPIASIAFHAEGELLAVASGHK 201 (792)
Q Consensus 128 k~---v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg---~~v~t~~h~s~V~sVafSpdG~~LasgSdd~ 201 (792)
.- ..-|.+|+..|-.++|+|.....|+||+.|++|+|||++.+ .++.+-.|.+.|+-|+|+.+-.+|++|+|++
T Consensus 245 ~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdG 324 (440)
T KOG0302|consen 245 SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDG 324 (440)
T ss_pred ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCc
Confidence 52 23466899999999999988999999999999999999987 5666667999999999999988999999655
Q ss_pred -EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE-EeeCccccCCCce
Q 036953 202 -LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT-AEVNDLDSSDSSM 254 (792)
Q Consensus 202 -V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS-~s~~dLrs~d~~~ 254 (792)
++|||++.-+.......+..|..+|++|.|+|....+++. +.+..+..||..+
T Consensus 325 t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 325 TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 9999999887665345667799999999999987766554 4455555555443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-16 Score=166.09 Aligned_cols=173 Identities=20% Similarity=0.402 Sum_probs=132.3
Q ss_pred EEEEEeCCCeEEEEeccC-------CCcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc---EEEEecCCCCC
Q 036953 71 GLVSWVEAESLRHLSAKY-------CPLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN---CLKVLSGHRRT 139 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t-------~~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk---~v~~L~gH~~~ 139 (792)
.+.++..-+.|++|...+ ..+.+|.+.|..++||| ....|++|+.||+|+|||++.+. ++. .+.|...
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCc
Confidence 344545555566666554 46789999999999999 56689999999999999999873 333 3789999
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCC---CcEEEEec-cCCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCc-
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANT---SECIGSCD-FYRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEE- 212 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~t---g~~v~t~~-h~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~- 212 (792)
|+.|.|+. +..+|++|+.||+++|||+++ ++++..|. |..+|++|.|+|.. ..|++++ |+.|.|||+.....
T Consensus 305 VNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 305 VNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred eeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 99999998 666999999999999999986 67888885 89999999999865 3444444 66799999965432
Q ss_pred -------------cc-CCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 213 -------------AS-SPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 213 -------------~~-~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+. ...++......+..|.||+.-.-++++.+..
T Consensus 384 ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d 430 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID 430 (440)
T ss_pred hhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc
Confidence 11 1222333466788999999877777776544
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-15 Score=161.03 Aligned_cols=238 Identities=13% Similarity=0.128 Sum_probs=184.6
Q ss_pred CcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
...+.+++.|+.+.++|...+ .+.||...|+.+.|+++...+++++.|..|+||......+......|..+|+.+.
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLS 310 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeee
Confidence 356788889999999998866 4689999999999999999999999999999999988877888889999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC---CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEe
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY---RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~---s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
.+| .+++|++++.|++..+.|++++.++....++ -.+++.+|||||.+|.+|. ++.|+|||++.+... ..+.
T Consensus 311 ~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~---a~Fp 386 (506)
T KOG0289|consen 311 LHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV---AKFP 386 (506)
T ss_pred ecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc---ccCC
Confidence 999 9999999999999999999999988877553 3488999999999999999 455999999988743 3566
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeeCccccCCCce-------eeecCC--CcccCCCCceEEEEecCCCEEEEee------
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSM-------TRATSP--GYLRYPPPAVFVANAQSGDHVSLAA------ 285 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~-------~l~t~s--g~~~~p~~~~~l~~~ssG~~~~l~s------ 285 (792)
+|..+|..++|+-+|-++++++.+..+..||-+. .+.... ....+.+...++..+.++-.++...
T Consensus 387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 7999999999999999998888755455554331 122111 1222333444444443222222222
Q ss_pred -ccCcccCCCceEEEeEECCCCcEEE
Q 036953 286 -ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 286 -~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
....+.+|.+....|.|....++++
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQYLA 492 (506)
T ss_pred eeeehhhhcccccceeeecccceEEe
Confidence 3334455677777888888888887
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-14 Score=147.05 Aligned_cols=166 Identities=17% Similarity=0.227 Sum_probs=124.7
Q ss_pred EEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTL-ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~L-aSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf 145 (792)
.+++...++.+++|+..+++ +..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+.. +..++|
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~ 80 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFAL 80 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEE
Confidence 34566778889999887653 2223 346789999999977 5667789999999999988877765544 567899
Q ss_pred ccCCCCEEE-EEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCC--eEEEEECCCCCcccCCeEEecC
Q 036953 146 HPLRSEILA-SGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGH--KLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 146 SP~dg~lLa-SgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd--~V~IWDlrt~~~~~~~~~~~~h 222 (792)
+| +++.++ +++.|+.|++||+.+++.+..+.....+.+++|+|+|++++++..+ .+++||.++.+... ....
T Consensus 81 ~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~----~~~~ 155 (300)
T TIGR03866 81 HP-NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD----NVLV 155 (300)
T ss_pred CC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE----EEEc
Confidence 99 666654 5567899999999998888877766667899999999999988753 37888987765322 1122
Q ss_pred CCCeEEEEEccCCCeEEEEEe
Q 036953 223 RRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s 243 (792)
......+.|+|+++.+++++.
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred CCCccEEEECCCCCEEEEEcC
Confidence 334578999999998876653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-16 Score=158.42 Aligned_cols=225 Identities=16% Similarity=0.226 Sum_probs=178.6
Q ss_pred CCCCCCCCCCCCCCCCCCCceEeeecccceeeCC--CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEE
Q 036953 6 WPHDQNSLRSQPSNHLRRRARNVSRLLAHREISP--KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRH 83 (792)
Q Consensus 6 w~~~~~~~~~~~~~s~~s~~r~V~~l~~~rels~--~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrv 83 (792)
|...-++.+....+..+.=..+||+.....++.. +...|..++|+.+.+.+ ++++.++.+|+
T Consensus 63 w~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~l----------------ltgg~ekllrv 126 (334)
T KOG0278|consen 63 WSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYL----------------LTGGQEKLLRV 126 (334)
T ss_pred eeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhh----------------hccchHHHhhh
Confidence 4444443333333444555578999988888773 33467778888876644 45567788899
Q ss_pred EeccCC-----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC
Q 036953 84 LSAKYC-----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL 158 (792)
Q Consensus 84 Wd~~t~-----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~ 158 (792)
++.+.- .+.+|.+.|..+.|....+.|++.+.|++||+||..+++.++.+. ....|+++.+++ ++++|.+ ..
T Consensus 127 fdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~-dG~ilTi-a~ 203 (334)
T KOG0278|consen 127 FDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ-DGRILTI-AY 203 (334)
T ss_pred hhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeecc-CCCEEEE-ec
Confidence 987643 467999999999999999999999999999999999999999987 667899999998 7766554 56
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe
Q 036953 159 DHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP 237 (792)
Q Consensus 159 DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~ 237 (792)
-+.|+.||..+-..++.+...-.|.+.+.+|+..++++|+.+. ++.||+.+++++. ....+|-++|.+|.|+|+|..
T Consensus 204 gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~--~~nkgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG--SYNKGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred CceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceee--ecccCCCCceEEEEECCCCce
Confidence 7789999999999999999999999999999999999988555 9999999998765 224678999999999999996
Q ss_pred EEEEEeeCccccCC
Q 036953 238 FVLTAEVNDLDSSD 251 (792)
Q Consensus 238 LlaS~s~~dLrs~d 251 (792)
.++.+.+..|+.|.
T Consensus 282 yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQ 295 (334)
T ss_pred eeccCCCceEEEEE
Confidence 65555566666553
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-14 Score=148.93 Aligned_cols=262 Identities=14% Similarity=0.184 Sum_probs=189.8
Q ss_pred eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcC-CC
Q 036953 35 REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSP-DG 107 (792)
Q Consensus 35 rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSP-DG 107 (792)
|+...+.+.+.+++|.-+|..+++|. .|+++++|+.... ...+|.+.|..++|+| ..
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs----------------~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~ 77 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGS----------------FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP 77 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecc----------------cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC
Confidence 66677778899999999988777773 4455555554322 3568999999999999 77
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEE
Q 036953 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAF 187 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVaf 187 (792)
..|++++.|++|++||+..++++..+....+.| -+.|+| ++++++.++.|..|...|.++.+.+...+..-.++.++|
T Consensus 78 d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w 155 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISW 155 (313)
T ss_pred cceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeee
Confidence 899999999999999999999998887555544 488999 999999999999999999999999999998899999999
Q ss_pred cCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCccccCCCceeeecCC-
Q 036953 188 HAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSSDSSMTRATSP- 260 (792)
Q Consensus 188 SpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~d~~~~l~t~s- 260 (792)
+-++.+|+... .+.|.|......+.. ..+..|.....++.|+|+|+++++++. +||+...-....+....
T Consensus 156 ~~~nd~Fflt~GlG~v~ILsypsLkpv---~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw 232 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVEILSYPSLKPV---QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW 232 (313)
T ss_pred cCCCCEEEEecCCceEEEEeccccccc---cccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC
Confidence 98887766655 477999988766643 356678899999999999999987665 55554322221111100
Q ss_pred --CcccCCCCceEEEEecCCCEEEEee---ccCccc-CCCceEEEeEECCCCcEEEEcccccc
Q 036953 261 --GYLRYPPPAVFVANAQSGDHVSLAA---ELPLMS-SLPFLIVPSVSIDDSRIDLQHASRRA 317 (792)
Q Consensus 261 --g~~~~p~~~~~l~~~ssG~~~~l~s---~l~~l~-gh~~~VwdV~~SpDGr~lv~~~~~~~ 317 (792)
--+.|......++.+++++.+-++. +..+.+ -+.+.-..|++.|.-.+|++..+..+
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence 0122333445555555555544433 222111 15667777888888888875544433
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=174.08 Aligned_cols=207 Identities=17% Similarity=0.263 Sum_probs=164.9
Q ss_pred CCCCCCceEeeeccc---cee---eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---
Q 036953 19 NHLRRRARNVSRLLA---HRE---ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC--- 89 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~---~re---ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~--- 89 (792)
.+...+-+.+|++.. .+. +..++..++++.|++.-. ..|++++.|++|+.||++..
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep---------------~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP---------------NILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc---------------cEEEecCCCceEEEEeeeccccc
Confidence 455667788998865 222 224455677777766532 35788899999999999754
Q ss_pred -CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 90 -PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQT-GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 90 -~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~t-gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
.+.+..+.|..++|+| .+.+|+++...|.+.+||++. .++...|.+|.++|.++.|+| +..+|||||.|++|+|||
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWD 248 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEe
Confidence 4567788999999999 889999999999999999975 457788899999999999999 999999999999999999
Q ss_pred CCCC--cEEEEeccCCCeeEEEEcCCCc-EEEEEc--CCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 167 ANTS--ECIGSCDFYRPIASIAFHAEGE-LLAVAS--GHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 167 l~tg--~~v~t~~h~s~V~sVafSpdG~-~LasgS--dd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
..+. +++.++....++.+++|-|... .|++++ ++. |+|||+++.-... ..+..|.+.++.++|.-....++.
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~--~t~~eH~~~vt~i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY--ATFLEHTDSVTGIAWDSGDRINLW 326 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc--eeeeccCccccceeccCCCceeeE
Confidence 9864 4566677888999999999875 566666 344 9999999886543 456779999999999764454555
Q ss_pred EEe
Q 036953 241 TAE 243 (792)
Q Consensus 241 S~s 243 (792)
+++
T Consensus 327 s~s 329 (839)
T KOG0269|consen 327 SCS 329 (839)
T ss_pred eec
Confidence 554
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=152.47 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=122.0
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCC--
Q 036953 136 HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKE-- 211 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~-- 211 (792)
|+-.|-.+-... ++.+|++++.|.+|.|||++ |+.+..+. ....-...+.+|+|+++++++ .-.|++|..--.+
T Consensus 186 h~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG 263 (420)
T KOG2096|consen 186 HQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG 263 (420)
T ss_pred cccceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence 344444555554 77899999999999999998 88888875 445566788899999999988 4449999873222
Q ss_pred ---cccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCC-------------------cccCCCCc
Q 036953 212 ---EASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPG-------------------YLRYPPPA 269 (792)
Q Consensus 212 ---~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg-------------------~~~~p~~~ 269 (792)
+......+.+|...|..++|+++...+++.+.+..++.|+.-+.+..... .+..+|..
T Consensus 264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g 343 (420)
T KOG2096|consen 264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG 343 (420)
T ss_pred chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC
Confidence 22223456779999999999999999999988777777665543322111 12233444
Q ss_pred eEEEEecCCCEEEEeec------cCcccCCCceEEEeEECCCCcEEEEccccc
Q 036953 270 VFVANAQSGDHVSLAAE------LPLMSSLPFLIVPSVSIDDSRIDLQHASRR 316 (792)
Q Consensus 270 ~~l~~~ssG~~~~l~s~------l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~ 316 (792)
..++.. .|..++++.. ...-+-|..-|.++.|++||++++..+.+-
T Consensus 344 ~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~ 395 (420)
T KOG2096|consen 344 DSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRY 395 (420)
T ss_pred cEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeeccee
Confidence 444443 3334444431 112235889999999999999999544443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=157.02 Aligned_cols=160 Identities=17% Similarity=0.185 Sum_probs=135.4
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc---EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN---CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk---~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
.+..|.+.|.-+.||++|++||+++.|.+..||++.... ..+++.+|..+|.-+.|+| |.++|++|+.|..+++||
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeecc
Confidence 467899999999999999999999999999999876543 4678889999999999999 999999999999999999
Q ss_pred CCCCcEEEEeccC--CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 167 ANTSECIGSCDFY--RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 167 l~tg~~v~t~~h~--s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+.+|.+...+.+. ..+.+++|.|||..+++|+ |..+..||++...... ........|.+++..+||+++++.+.
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~---W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN---WEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc---ccccccceeEEEEEcCCCcEEEEEec
Confidence 9999998888654 7889999999999999999 5559999997654221 11112356999999999999999998
Q ss_pred eCccccCCCc
Q 036953 244 VNDLDSSDSS 253 (792)
Q Consensus 244 ~~dLrs~d~~ 253 (792)
+..++..+..
T Consensus 375 d~~i~l~~~e 384 (519)
T KOG0293|consen 375 DKKIRLYNRE 384 (519)
T ss_pred ccceeeechh
Confidence 7776654433
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-14 Score=151.75 Aligned_cols=161 Identities=16% Similarity=0.258 Sum_probs=142.5
Q ss_pred CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
..+..|.+.|++++.+|+.+++++|+.|..-.||++.++.....+.+|+..|+++.|+. ++.+|+||..+|.|++|+..
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcc
Confidence 35678999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CCcEEEEec-cCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc
Q 036953 169 TSECIGSCD-FYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 169 tg~~v~t~~-h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
++...+.+. .-..+.-+.|||.+.+|+.|+++ .|.+|.+.++... ....+|..++++=.|.|+|+++++.-.+..
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~---kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC---KVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee---eEecCCCCCcccccccCCCceEEEEecCce
Confidence 998888875 55778899999999999999955 4999999886433 356779999999999999998888777666
Q ss_pred cccCCCc
Q 036953 247 LDSSDSS 253 (792)
Q Consensus 247 Lrs~d~~ 253 (792)
|+.|+.+
T Consensus 214 i~~Wn~k 220 (399)
T KOG0296|consen 214 IIVWNPK 220 (399)
T ss_pred EEEEecC
Confidence 6666544
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-14 Score=148.73 Aligned_cols=184 Identities=15% Similarity=0.155 Sum_probs=147.3
Q ss_pred CCcEEEEEeCCCeEEEEeccCC-------------------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC-------------------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG 127 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~-------------------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg 127 (792)
.++.++++..|+.|.+||.+.. .-.+|+-.|.++.|-| |.-.|.+++.|+++++||.++-
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 3556788888888888887522 1246888899999999 8888999999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcc--CCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcE-EEEEc-CCeE
Q 036953 128 NCLKVLSGHRRTPWVVRFHP--LRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGEL-LAVAS-GHKL 202 (792)
Q Consensus 128 k~v~~L~gH~~~VtsVafSP--~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~-LasgS-dd~V 202 (792)
+....|+ -.+.|..-+|+| ....++++|..|-.|++.|+..|.+..++ +|...|.++.|+|..++ |++|+ |+.|
T Consensus 135 Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~i 213 (397)
T KOG4283|consen 135 QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAI 213 (397)
T ss_pred eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceE
Confidence 9888887 667889989988 23457888889999999999999999998 59999999999999875 56666 6669
Q ss_pred EEEECCCCC------------cccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 203 YIWPYNNKE------------EASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 203 ~IWDlrt~~------------~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
++||+++.. ..........|.+.|+.++|..++.++++.+-+..++.|+.
T Consensus 214 rlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 214 RLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred EEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 999998762 11101113347889999999999999988888777775554
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=169.61 Aligned_cols=189 Identities=20% Similarity=0.217 Sum_probs=148.7
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcE-------EEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEE
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRG-------LVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~-------L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaS 112 (792)
+...++++.|+++|.++++|..+..+..+... ..+......+.-|+.. ..+.+|...|..++|+|++.+|++
T Consensus 68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp~~~~lvS 146 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSPDDSLLVS 146 (942)
T ss_pred ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCCCccEEEE
Confidence 45579999999999999999655443222221 0011112223333322 246789999999999999999999
Q ss_pred EECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-------cCCCeeEE
Q 036953 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-------FYRPIASI 185 (792)
Q Consensus 113 GS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-------h~s~V~sV 185 (792)
++.|++|.|||..+.+.+.++.+|.+.|.++.|.| -+++|++-+.|++|++|++.+-...+.+. ....+..+
T Consensus 147 ~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl 225 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL 225 (942)
T ss_pred ecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence 99999999999999999999999999999999999 99999999999999999987755555541 34568899
Q ss_pred EEcCCCcEEEEEc--C---CeEEEEECCCCCcccCCeEEecCCCCeEEEEEcc
Q 036953 186 AFHAEGELLAVAS--G---HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP 233 (792)
Q Consensus 186 afSpdG~~LasgS--d---d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP 233 (792)
.|+|||++|++.- + ..+.|.+-.+.+.. ..+.+|..++.+++|+|
T Consensus 226 SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~---~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 226 SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVD---KDLVGHSAPVEVVRFNP 275 (942)
T ss_pred ccCCCcCeecchhhccCCcceeEEEecCCceee---eeeecCCCceEEEEeCh
Confidence 9999999999975 2 23889887666643 36778999999999999
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-14 Score=155.08 Aligned_cols=211 Identities=20% Similarity=0.264 Sum_probs=163.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
+|.+.+.+++.|+||++|++|+.|..|.|||..+.+.++.|.+|.+.|.+++|-. ..+.+++++.|++|++|++.....
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHH
Confidence 7888999999999999999999999999999999999999999999999999998 788899999999999999998776
Q ss_pred EEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 173 IGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 173 v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
+.++ +|.+.|.++.-..-++.+.+++ |.++++|++.... ...+.++.+.+-+++|-.+.. +++++.+..|..|
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees----qlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLW 353 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES----QLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALW 353 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccccceeEEEeccccc----eeeeeCCCCCeeeEEEecccc-eeeccCCceEEEe
Confidence 6654 7999999999888888888886 5669999994333 245677888999999986655 5555554444444
Q ss_pred CCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccc
Q 036953 251 DSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASL 330 (792)
Q Consensus 251 d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~ 330 (792)
+.... ..+|.....-|- ...+... .+++||..++.-|...+++
T Consensus 354 s~~KK------------kplf~~~~AHgv----~~~~~~~-~~~~Witsla~i~~sdL~a-------------------- 396 (479)
T KOG0299|consen 354 SLLKK------------KPLFTSRLAHGV----IPELDPV-NGNFWITSLAVIPGSDLLA-------------------- 396 (479)
T ss_pred eeccc------------CceeEeeccccc----cCCcccc-ccccceeeeEecccCceEE--------------------
Confidence 32211 011111100000 0000111 2558999999999999999
Q ss_pred cccCCCCCccccccccccccCC
Q 036953 331 HLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 331 q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+||.|..|.-|.+.++
T Consensus 397 ------sGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 397 ------SGSWSGCVRLWKIEDG 412 (479)
T ss_pred ------ecCCCCceEEEEecCC
Confidence 8999999999999888
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.9e-16 Score=174.52 Aligned_cols=157 Identities=21% Similarity=0.381 Sum_probs=137.5
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+.+|..+|.++.|+++...|+.|+.||+|++||+...+.++.|.||...+..+.|+| -+.+.++|+.|+.+++||.+..
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhcc
Confidence 789999999999999999999999999999999999999999999999999999999 8899999999999999999998
Q ss_pred cEEEEec-cCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-eCcc
Q 036953 171 ECIGSCD-FYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDL 247 (792)
Q Consensus 171 ~~v~t~~-h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dL 247 (792)
.|...+. |...+..+.|+|+|++++.++++ .++|||+..++... .+..|...+..+.|||..- ++++++ +..+
T Consensus 145 Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~---ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv 220 (825)
T KOG0267|consen 145 GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK---EFKSHEGKVQSLEFHPLEV-LLAPGSSDRTV 220 (825)
T ss_pred CceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccc---ccccccccccccccCchhh-hhccCCCCcee
Confidence 9999985 77788999999999999999974 59999998888543 4456889999999999776 444443 5545
Q ss_pred ccCCC
Q 036953 248 DSSDS 252 (792)
Q Consensus 248 rs~d~ 252 (792)
+.|+.
T Consensus 221 ~f~dl 225 (825)
T KOG0267|consen 221 RFWDL 225 (825)
T ss_pred eeecc
Confidence 55443
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.9e-15 Score=162.21 Aligned_cols=216 Identities=15% Similarity=0.220 Sum_probs=148.5
Q ss_pred ceEeeecc-------cceeeCC-CCceeeeEEeeCCCce--EeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCC
Q 036953 25 ARNVSRLL-------AHREISP-KTKYVPKRQWVDASKL--KTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPP 94 (792)
Q Consensus 25 ~r~V~~l~-------~~rels~-~tk~V~s~aWspd~~l--la~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH 94 (792)
.++.|+.. ..|.+.+ .+..++++.|++.+.. +.+|..-..+.|.++..+.-...+--.+-|+ ...+||
T Consensus 190 ~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm--~nTKGH 267 (641)
T KOG0772|consen 190 TVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDM--YNTKGH 267 (641)
T ss_pred eEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhh--hccCCc
Confidence 45667642 2344443 4457899999999876 3444433334343333222211111112222 134689
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc-EEEEec-----CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 95 PRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN-CLKVLS-----GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 95 ~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk-~v~~L~-----gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
...++|.+|+| +...|++++.||+++|||++..+ .+.+|+ +..-.++.++|++ ++++|+.|..||.|.+||.
T Consensus 268 ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 268 IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDK 346 (641)
T ss_pred eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeec
Confidence 99999999999 56689999999999999997643 344443 3455789999999 9999999999999999998
Q ss_pred CCCc--EEEEe--ccCC--CeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 168 NTSE--CIGSC--DFYR--PIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 168 ~tg~--~v~t~--~h~s--~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
.... +...+ .|.. .|++|.|++||++|++-+ |+.+++||++..++......-+....+-+.++|+|+.+.|++
T Consensus 347 ~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~T 426 (641)
T KOG0772|consen 347 GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILT 426 (641)
T ss_pred CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEe
Confidence 6532 22222 2554 899999999999999977 677999999988754322233334566788999999996666
Q ss_pred EEe
Q 036953 241 TAE 243 (792)
Q Consensus 241 S~s 243 (792)
+.+
T Consensus 427 GtS 429 (641)
T KOG0772|consen 427 GTS 429 (641)
T ss_pred ccc
Confidence 554
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=153.12 Aligned_cols=251 Identities=16% Similarity=0.191 Sum_probs=181.7
Q ss_pred EEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC------C--------------
Q 036953 71 GLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ------T-------------- 126 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~------t-------------- 126 (792)
.+-+.+.|.+.++|.++++ ++.||.+.|++++|++.+.++++++.|++..||... .
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 4556678899999999877 568999999999999999999999999999999731 0
Q ss_pred ----------------C----cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEE
Q 036953 127 ----------------G----NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASI 185 (792)
Q Consensus 127 ----------------g----k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sV 185 (792)
+ .++..|.+|.+.|.+..|-. .++.+++++.|.+..+||+++++++..+ +|....+.+
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc 320 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHC 320 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhcccc
Confidence 0 13456789999999999998 8999999999999999999999999988 689999999
Q ss_pred EEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc------eeeec
Q 036953 186 AFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS------MTRAT 258 (792)
Q Consensus 186 afSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~------~~l~t 258 (792)
+-||..+++++++.+. .++||++. .+.....+.+|.+.|+++.|+.+.+ ++.++.+..++.|+.+ .++.+
T Consensus 321 stHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt 397 (481)
T KOG0300|consen 321 STHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT 397 (481)
T ss_pred ccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec
Confidence 9999999999999555 99999983 3333456778999999999998877 5554443334444322 22332
Q ss_pred CC--CcccCCCCceEEEEecCCCEEEEee-------ccC--cccCCCceEEEeEECCCCc--EEEEccccccCCCCcccc
Q 036953 259 SP--GYLRYPPPAVFVANAQSGDHVSLAA-------ELP--LMSSLPFLIVPSVSIDDSR--IDLQHASRRASSSNMQIE 325 (792)
Q Consensus 259 ~s--g~~~~p~~~~~l~~~ssG~~~~l~s-------~l~--~l~gh~~~VwdV~~SpDGr--~lv~~~~~~~~Sg~v~~~ 325 (792)
.+ +..+.+.....++...+...+.++. .++ .-.+|..-|.++++..+-- -|+
T Consensus 398 dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLf--------------- 462 (481)
T KOG0300|consen 398 DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLF--------------- 462 (481)
T ss_pred CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccc---------------
Confidence 22 2222232333334433333344443 111 2346777777777765421 111
Q ss_pred ccccccccCCCCCccccccccccccC
Q 036953 326 PSASLHLQSDSNVEQDGTVPSMETFP 351 (792)
Q Consensus 326 ~s~~~q~~~~~sgs~D~tv~p~~~~~ 351 (792)
+..+|+.+.-|.+.-
T Consensus 463 -----------tcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 463 -----------TCGFDRMVAGWKINT 477 (481)
T ss_pred -----------cccccceeeeeEecc
Confidence 788999998888653
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=146.87 Aligned_cols=219 Identities=15% Similarity=0.152 Sum_probs=161.6
Q ss_pred CCcEEEEEeCCCeEEEEeccCC-------CcCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCc--EEEEecCC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC-------PLVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTGN--CLKVLSGH 136 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~-------~L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tgk--~v~~L~gH 136 (792)
.+.+|.+++.|++||++..+.+ .|.+|.++|..++|.. -|.+||+++.||.|.||.-..++ ....+..|
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h 101 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH 101 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence 4678999999999999998644 4789999999999987 89999999999999999987764 34566789
Q ss_pred CCCcEEEEEccCC-CCEEEEEeCCCeEEEEECCCC-c-EEEE--eccCCCeeEEEEcCC---C-----------cEEEEE
Q 036953 137 RRTPWVVRFHPLR-SEILASGSLDHEVRLWDANTS-E-CIGS--CDFYRPIASIAFHAE---G-----------ELLAVA 197 (792)
Q Consensus 137 ~~~VtsVafSP~d-g~lLaSgS~DgtVrLWDl~tg-~-~v~t--~~h~s~V~sVafSpd---G-----------~~Lasg 197 (792)
...|++++|.|++ +-.|++++.||.|.+.+.++. . .... ..|.-.+++++|.|. | +.|+++
T Consensus 102 ~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg 181 (299)
T KOG1332|consen 102 SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG 181 (299)
T ss_pred cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc
Confidence 9999999999943 456788899999999988764 2 2222 248889999999986 4 568888
Q ss_pred c-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC---CeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEE
Q 036953 198 S-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA---APFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVA 273 (792)
Q Consensus 198 S-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG---~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~ 273 (792)
+ |..|+||+....+-.. ...+.+|.+.|+.++|.|.- +.-+++++.+ ...++|
T Consensus 182 GcDn~VkiW~~~~~~w~~-e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD----------------------g~viIw 238 (299)
T KOG1332|consen 182 GCDNLVKIWKFDSDSWKL-ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD----------------------GTVIIW 238 (299)
T ss_pred CCccceeeeecCCcchhh-hhhhhhcchhhhhhhhccccCCCceeeEEecCC----------------------CcEEEE
Confidence 8 5559999998864322 23467799999999999964 2233444311 122233
Q ss_pred EecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEc
Q 036953 274 NAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQH 312 (792)
Q Consensus 274 ~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~ 312 (792)
.... +. .-. ...+++..+..+|.+.+|..|.+|+++
T Consensus 239 t~~~-e~-e~w-k~tll~~f~~~~w~vSWS~sGn~LaVs 274 (299)
T KOG1332|consen 239 TKDE-EY-EPW-KKTLLEEFPDVVWRVSWSLSGNILAVS 274 (299)
T ss_pred EecC-cc-Ccc-cccccccCCcceEEEEEeccccEEEEe
Confidence 3221 11 001 112344478899999999999999833
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-15 Score=157.54 Aligned_cols=225 Identities=16% Similarity=0.134 Sum_probs=173.1
Q ss_pred EEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--------------------
Q 036953 71 GLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT-------------------- 126 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t-------------------- 126 (792)
.+++++.||.+++||+... .+..|.+.|..+++.. ..+++++.|++|+.|-+..
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~ 158 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRK 158 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccc
Confidence 4678889999999998753 5789999999999975 6788888999888887421
Q ss_pred -------C-----------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEc
Q 036953 127 -------G-----------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFH 188 (792)
Q Consensus 127 -------g-----------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafS 188 (792)
| .++..+.--...|.++.|+|....+|++|+.|+.|.|||++++++++.+-....-+.|+|+
T Consensus 159 ~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Iswn 238 (433)
T KOG0268|consen 159 NSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWN 238 (433)
T ss_pred cccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecC
Confidence 1 1222222234567889999978889999999999999999999999998888888999999
Q ss_pred CCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCC
Q 036953 189 AEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPP 267 (792)
Q Consensus 189 pdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~ 267 (792)
|.+-.|++++.|. ++.||++..+... ....+|.+.|.+|+|+|.|+.+++++-+..|+..
T Consensus 239 PeafnF~~a~ED~nlY~~DmR~l~~p~--~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf----------------- 299 (433)
T KOG0268|consen 239 PEAFNFVAANEDHNLYTYDMRNLSRPL--NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIF----------------- 299 (433)
T ss_pred ccccceeeccccccceehhhhhhcccc--hhhcccceeEEEeccCCCcchhccccccceEEEe-----------------
Confidence 9888888888555 9999998877532 3456789999999999999999887766655541
Q ss_pred CceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccc
Q 036953 268 PAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSM 347 (792)
Q Consensus 268 ~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~ 347 (792)
....++-+-+.-. -....|.+|.||-|.++|+ +||-|..|.-|
T Consensus 300 ------~~~~~~SRdiYht-----kRMq~V~~Vk~S~Dskyi~--------------------------SGSdd~nvRlW 342 (433)
T KOG0268|consen 300 ------PVNHGHSRDIYHT-----KRMQHVFCVKYSMDSKYII--------------------------SGSDDGNVRLW 342 (433)
T ss_pred ------ecCCCcchhhhhH-----hhhheeeEEEEeccccEEE--------------------------ecCCCcceeee
Confidence 1223332222211 1456889999999999999 88899999999
Q ss_pred cccCCC
Q 036953 348 ETFPVI 353 (792)
Q Consensus 348 ~~~~~~ 353 (792)
..-.-|
T Consensus 343 ka~Ase 348 (433)
T KOG0268|consen 343 KAKASE 348 (433)
T ss_pred ecchhh
Confidence 855544
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-13 Score=141.88 Aligned_cols=248 Identities=18% Similarity=0.201 Sum_probs=175.3
Q ss_pred CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc---CCCCCCeEEEEEcCCCCEEEEEECCC
Q 036953 41 TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL---VPPPRSTIAAAFSPDGRTLASTHGDH 117 (792)
Q Consensus 41 tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L---~gH~~~V~sLafSPDG~~LaSGS~DG 117 (792)
...+.++.|++.+. .|+..+.|+++++|+.....+ ..|..++.+++|.+ ...+++|+-||
T Consensus 13 ~d~IS~v~f~~~~~----------------~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg 75 (323)
T KOG1036|consen 13 EDGISSVKFSPSSS----------------DLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDG 75 (323)
T ss_pred hhceeeEEEcCcCC----------------cEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCc
Confidence 34567777775543 333445678888888876543 46899999999985 67899999999
Q ss_pred eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEE
Q 036953 118 TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVA 197 (792)
Q Consensus 118 tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~Lasg 197 (792)
.|+++|+++++.. .+..|..+|.++.+.+ ....+++|+.|++|++||.++......+....+|.++.. .|+.|++|
T Consensus 76 ~vr~~Dln~~~~~-~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg 151 (323)
T KOG1036|consen 76 QVRRYDLNTGNED-QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVG 151 (323)
T ss_pred eEEEEEecCCcce-eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEe
Confidence 9999999988754 4556999999999998 778999999999999999999878888877788988875 46677776
Q ss_pred c-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc-----ccC----CCceeeecCC-------
Q 036953 198 S-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL-----DSS----DSSMTRATSP------- 260 (792)
Q Consensus 198 S-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL-----rs~----d~~~~l~t~s------- 260 (792)
+ +.++.+||+++..... ......-+-.+++|++-|++.-+++++-+..+ +.. ..+...+.+.
T Consensus 152 ~~~r~v~iyDLRn~~~~~-q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~ 230 (323)
T KOG1036|consen 152 TSDRKVLIYDLRNLDEPF-QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE 230 (323)
T ss_pred ecCceEEEEEcccccchh-hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce
Confidence 5 5569999999887532 11122235568999999987766665543332 221 1112221111
Q ss_pred -----CcccCCCCceEEEEecCCCEEEEeec-----cCcccCCCceEEEeEECCCCcEEE
Q 036953 261 -----GYLRYPPPAVFVANAQSGDHVSLAAE-----LPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 261 -----g~~~~p~~~~~l~~~ssG~~~~l~s~-----l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+.+.|.+....|+.+.++..+..+.. +.-+...+..|-.++|+.||..|+
T Consensus 231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence 12334444445666666666666652 223333567899999999999998
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=159.37 Aligned_cols=219 Identities=12% Similarity=0.119 Sum_probs=166.4
Q ss_pred EeecCCCceee--cCCcEEEEEeCCCeEEEEeccCC-------CcC--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 036953 56 KTCGPSDSSVR--DAKRGLVSWVEAESLRHLSAKYC-------PLV--PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDC 124 (792)
Q Consensus 56 la~G~~a~sv~--d~~~~L~S~s~d~sIrvWd~~t~-------~L~--gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl 124 (792)
++.|....++. .....++++. .+.|++||+... +|. .....|.++...|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 45555544443 4566777766 467999998632 232 23456899999999999999999999999999
Q ss_pred CCCcE--EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CC
Q 036953 125 QTGNC--LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GH 200 (792)
Q Consensus 125 ~tgk~--v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd 200 (792)
..... ...+....-....++.+| |.++.++|..||.|.+||+++...+..| +|.+.+.||..++||..|.+|+ |+
T Consensus 495 AapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 76543 233333345667799999 9999999999999999999999999998 5999999999999999999999 78
Q ss_pred eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCE
Q 036953 201 KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDH 280 (792)
Q Consensus 201 ~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~ 280 (792)
.|+.||++.+.+.. .......|.++-++|+++++++......++. +. .++..
T Consensus 574 tvRcWDlregrqlq----qhdF~SQIfSLg~cP~~dWlavGMens~vev----------------------lh--~skp~ 625 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQ----QHDFSSQIFSLGYCPTGDWLAVGMENSNVEV----------------------LH--TSKPE 625 (705)
T ss_pred ceeehhhhhhhhhh----hhhhhhhheecccCCCccceeeecccCcEEE----------------------Ee--cCCcc
Confidence 89999999988543 3334678999999999998887764332221 11 12222
Q ss_pred EEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 281 VSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 281 ~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
++... -|...|.++.|++.|++++
T Consensus 626 kyqlh------lheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 626 KYQLH------LHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred ceeec------ccccEEEEEEecccCceee
Confidence 22221 2899999999999999999
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-13 Score=136.14 Aligned_cols=234 Identities=15% Similarity=0.152 Sum_probs=159.6
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC----------CCcCCCCCCeEEEEEcCCCCE
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY----------CPLVPPPRSTIAAAFSPDGRT 109 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t----------~~L~gH~~~V~sLafSPDG~~ 109 (792)
.++.+..++|+|.+.+.+.|.. ...+-.+.....+..-..+. ..-+-|.+.|+|.+|+|+|..
T Consensus 31 dsqairav~fhp~g~lyavgsn-------skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel 103 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSN-------SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL 103 (350)
T ss_pred chhheeeEEecCCCceEEeccC-------CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence 3457888999999998887731 22222222222222211111 123468899999999999999
Q ss_pred EEEEECCCeEEEEECCCCcE-----EEEecCCCCCcEEEEEcc---CCCCEEEEEe-CCCeEEEEECCCCcEEEEe-ccC
Q 036953 110 LASTHGDHTVKIIDCQTGNC-----LKVLSGHRRTPWVVRFHP---LRSEILASGS-LDHEVRLWDANTSECIGSC-DFY 179 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tgk~-----v~~L~gH~~~VtsVafSP---~dg~lLaSgS-~DgtVrLWDl~tg~~v~t~-~h~ 179 (792)
|++|++|++|++..++...+ ...|.-|.+.|..++|-. ..+.+|++++ .|..|.+-|..+|+....+ +|.
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght 183 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT 183 (350)
T ss_pred EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence 99999999999987654322 345777999999999954 2456788876 4788888899999988887 588
Q ss_pred CCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEec----CCCCeEEEEEccCCCeEEEEEeeCccccCCCce
Q 036953 180 RPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLK----TRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSM 254 (792)
Q Consensus 180 s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~----h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~ 254 (792)
+.|.++ ++.+|-+|++++.++ |++||++-.......-.... ....|.+|+..|.|+. ++++..+
T Consensus 184 ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl-l~sg~~d--------- 252 (350)
T KOG0641|consen 184 GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL-LASGHAD--------- 252 (350)
T ss_pred ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce-eeeccCC---------
Confidence 888776 577899999999655 99999998776542211111 1367999999999994 4444211
Q ss_pred eeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 255 TRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 255 ~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
....+.+...+..+.-+ --|...|-+|.|||...+++
T Consensus 253 -------------ssc~lydirg~r~iq~f------~phsadir~vrfsp~a~yll 289 (350)
T KOG0641|consen 253 -------------SSCMLYDIRGGRMIQRF------HPHSADIRCVRFSPGAHYLL 289 (350)
T ss_pred -------------CceEEEEeeCCceeeee------CCCccceeEEEeCCCceEEE
Confidence 11222222222222222 22888899999999999999
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-15 Score=171.26 Aligned_cols=170 Identities=22% Similarity=0.329 Sum_probs=149.6
Q ss_pred cEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf 145 (792)
..|..+..+++|++||+... +|.+|...+..+.|+|-+.++++|+.|+.+++||.+...|.+.+.+|...|..++|
T Consensus 83 ~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~l 162 (825)
T KOG0267|consen 83 RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRL 162 (825)
T ss_pred hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEee
Confidence 34566678999999999866 47899999999999999999999999999999999988899999999999999999
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCC
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTR 223 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~ 223 (792)
+| ++.++++++.|.++++||+..|+.+..|. |...+..+.|||..-+++.|+.++ |++||+++.+.+. ......
T Consensus 163 sP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~---s~~~~~ 238 (825)
T KOG0267|consen 163 SP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS---SGKPET 238 (825)
T ss_pred cC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee---ccCCcc
Confidence 99 99999999999999999999999999996 999999999999999999999554 9999999876443 223346
Q ss_pred CCeEEEEEccCCCeEEEEEe
Q 036953 224 RSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s 243 (792)
..|.++.|+|++..++....
T Consensus 239 ~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 239 DGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred CCceeeeecCCceeeecCch
Confidence 78999999999996554443
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.7e-14 Score=162.24 Aligned_cols=174 Identities=22% Similarity=0.311 Sum_probs=145.2
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
++.++++++.|+++++||..++ .+.+|...|.++... ...+++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 4778999999999999998876 478999999999874 6678889999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCC-CcccCCeEEe
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNK-EEASSPIIVL 220 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~-~~~~~~~~~~ 220 (792)
..+ +.++++|+.|++|++||+.++++++.+ +|...|.++.+... ..+++|+ |..|++||+++. ++.. ...
T Consensus 338 ~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~---tl~ 410 (537)
T KOG0274|consen 338 QLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH---TLQ 410 (537)
T ss_pred Eec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh---hhc
Confidence 996 689999999999999999999999999 59999999988765 8888888 555999999999 5543 445
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
.|..-+..+.+ .++.|+.+..+..|+.||.
T Consensus 411 ~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 411 GHTSLVSSLLL--RDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred CCccccccccc--ccceeEeccccccEEEeec
Confidence 56666655544 4666666666555665543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-14 Score=154.36 Aligned_cols=232 Identities=16% Similarity=0.158 Sum_probs=174.9
Q ss_pred CCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCE
Q 036953 77 EAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEI 152 (792)
Q Consensus 77 ~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~l 152 (792)
....|.+|....+. ..--++.|.+++-+|+|.+|+.|...+.+++|.+.+|+.+..+.+|...|+++.|+- |+.+
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~ 137 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSH 137 (476)
T ss_pred cCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcE
Confidence 44567888876542 223467799999999999999998999999999999999999999999999999998 9999
Q ss_pred EEEEeCCCeEEEEECCC---------CcEEEEe-ccCCCeeEEEEcCCC--cEEEEEc-CCeEEEEECCCCCcccCCeEE
Q 036953 153 LASGSLDHEVRLWDANT---------SECIGSC-DFYRPIASIAFHAEG--ELLAVAS-GHKLYIWPYNNKEEASSPIIV 219 (792)
Q Consensus 153 LaSgS~DgtVrLWDl~t---------g~~v~t~-~h~s~V~sVafSpdG--~~LasgS-dd~V~IWDlrt~~~~~~~~~~ 219 (792)
|+|++.||.|.+|++-. -+++..| .|.-+|+++...+.| .+|++++ |..+++||+..+... ..
T Consensus 138 iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL----lt 213 (476)
T KOG0646|consen 138 IITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL----LT 213 (476)
T ss_pred EEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee----EE
Confidence 99999999999998742 3456666 588899998887654 5788888 555999999988743 34
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCc--eE
Q 036953 220 LKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPF--LI 297 (792)
Q Consensus 220 ~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~--~V 297 (792)
......+.+++.+|.+..+++++++..+....... .++. ......-.....+. ....+.||.+ .|
T Consensus 214 i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~----~~~~---~~~v~~k~~~~~~t------~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 214 ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK----LSGQ---SAGVNQKGRHEENT------QINVLVGHENESAI 280 (476)
T ss_pred EecCCcceeEEEcccccEEEecCCcceEEeeehhc----CCcc---cccccccccccccc------eeeeeccccCCcce
Confidence 44678899999999999888888766655322110 0000 00000000001111 2234556887 99
Q ss_pred EEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 298 VPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 298 wdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
.+++++-||..|+ +|..|.+|+-||+.+-
T Consensus 281 TcLais~DgtlLl--------------------------SGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 281 TCLAISTDGTLLL--------------------------SGDEDGKVCVWDIYSK 309 (476)
T ss_pred eEEEEecCccEEE--------------------------eeCCCCCEEEEecchH
Confidence 9999999999999 8999999999997665
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.1e-14 Score=158.26 Aligned_cols=200 Identities=18% Similarity=0.253 Sum_probs=162.8
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
.+.+++.+..|.++.+|..... .|.+|+..|+++....++. ++|||.|.++++|.. +++...+++|+..|+++
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAV 146 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeee
Confidence 4567899999999999988654 6899999999999887777 999999999999976 56777899999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecC
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h 222 (792)
..-| ++ .++||+.|++||+|.- ++.+++| +|.+.|+.+++-+++.+|-++.|+.|++|++ +++. .....+|
T Consensus 147 ~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~---l~~~~gh 218 (745)
T KOG0301|consen 147 ASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV---LLEMHGH 218 (745)
T ss_pred eecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCce---eeeeecc
Confidence 9998 44 8999999999999985 6777777 5999999999998887776666777999999 4443 3467789
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCc-eEEEeE
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPF-LIVPSV 301 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~-~VwdV~ 301 (792)
..-|+++....++..+++++.+..++.|+.. .|...-. |+. .||++.
T Consensus 219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-------------------------e~~q~I~-------lPttsiWsa~ 266 (745)
T KOG0301|consen 219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKD-------------------------ECVQVIT-------LPTTSIWSAK 266 (745)
T ss_pred ceEEEEEEecCCCCeEEEecCCceEEEeecC-------------------------ceEEEEe-------cCccceEEEE
Confidence 9999999977777768888877766665422 2322222 444 899999
Q ss_pred ECCCCcEEE
Q 036953 302 SIDDSRIDL 310 (792)
Q Consensus 302 ~SpDGr~lv 310 (792)
+-++|..++
T Consensus 267 ~L~NgDIvv 275 (745)
T KOG0301|consen 267 VLLNGDIVV 275 (745)
T ss_pred EeeCCCEEE
Confidence 999999988
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=144.65 Aligned_cols=221 Identities=16% Similarity=0.159 Sum_probs=166.5
Q ss_pred CCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc----------EEEEe-----cCCCCCcEEEEEccCCCCEEEE
Q 036953 92 VPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN----------CLKVL-----SGHRRTPWVVRFHPLRSEILAS 155 (792)
Q Consensus 92 ~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk----------~v~~L-----~gH~~~VtsVafSP~dg~lLaS 155 (792)
..|.+.|+++...+ .|+++++|+.||.|.+||++... .+..+ .+|+-.|..+.|-|.|...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999999 89999999999999999997432 11111 2688899999999988889999
Q ss_pred EeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCC---cEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEE
Q 036953 156 GSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEG---ELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHF 231 (792)
Q Consensus 156 gS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG---~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVaf 231 (792)
++-|+++|+||.++.+....|..++.|.+-+|+|-. .++|+|.++- |++.|+..+... ..+.+|.+.|.+|.|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s---H~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS---HTLSGHRDGVLAVEW 196 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce---eeeccccCceEEEEe
Confidence 999999999999999999999999999999999853 4677777554 999999998854 367789999999999
Q ss_pred ccCCCeEEEEEe-eCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 232 HPHAAPFVLTAE-VNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 232 SPdG~~LlaS~s-~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+|..++++++++ +..++.||.+.. +| .+.+.+...+.. .. .+..-..|.+.|..++++.||++++
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRra----sg-------cf~~lD~hn~k~--~p-~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRA----SG-------CFRVLDQHNTKR--PP-ILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecc----cc-------eeEEeecccCcc--Cc-cccccccccceeeeeeecccchhhh
Confidence 999999998877 333444332211 00 011111111111 00 0111123888999999999999998
Q ss_pred EccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 311 QHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 311 ~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
+-..|..++-|....|+.+
T Consensus 263 --------------------------~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 263 --------------------------SCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred --------------------------hccCccceEEeecccCccc
Confidence 6667778888888888776
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=150.42 Aligned_cols=207 Identities=17% Similarity=0.151 Sum_probs=157.8
Q ss_pred ccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC--------CcCCCCCCeEEEEE
Q 036953 32 LAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC--------PLVPPPRSTIAAAF 103 (792)
Q Consensus 32 ~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~--------~L~gH~~~V~sLaf 103 (792)
....++.+...++.+++|+|.... ..++++...+.|-+|+..++ .+.+|..+|.++.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~--------------~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F 242 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENR--------------KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKF 242 (498)
T ss_pred eecceeEecccceEEEEecccCcc--------------eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEe
Confidence 333445566778899999998541 23344456677777777422 24689999999999
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCc--EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEe-cc
Q 036953 104 SP-DGRTLASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC-IGSC-DF 178 (792)
Q Consensus 104 SP-DG~~LaSGS~DGtVrIWDl~tgk--~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-v~t~-~h 178 (792)
+| +...+++.|.||+|++-|++.+. .+..+......+.++.|+. +...++.+..=|...+||++++.. ...+ -|
T Consensus 243 ~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh 321 (498)
T KOG4328|consen 243 SPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH 321 (498)
T ss_pred cCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhh
Confidence 99 78899999999999999998764 3344443556778888988 666677777667999999998764 3333 37
Q ss_pred CCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCcccC-CeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 179 YRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASS-PIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 179 ~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~-~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
...|++++++|.. .+|++++ |++++|||++.-..... .+....|...|.++.|+|++-.|+++|.+..|+.++..
T Consensus 322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 7799999999987 4677888 66699999987765443 34567799999999999999999999999999987764
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=152.83 Aligned_cols=260 Identities=15% Similarity=0.152 Sum_probs=181.5
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCC----------cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE--ec
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCP----------LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV--LS 134 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~----------L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~--L~ 134 (792)
.....|+.+.+++.|.+++.+... ...|...|..+.|-|....|++.+.|.++++||+++++++.. +.
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 456678888899999999876432 246999999999999777899999999999999999988766 88
Q ss_pred CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc--------------------EEEEe--------ccCCCeeE--
Q 036953 135 GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE--------------------CIGSC--------DFYRPIAS-- 184 (792)
Q Consensus 135 gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~--------------------~v~t~--------~h~s~V~s-- 184 (792)
||.+.|.+++|.|++...|++|+.|+.|.|||++-.. +.... .+...|.+
T Consensus 142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv 221 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV 221 (720)
T ss_pred ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence 9999999999999999999999999999999997422 00000 12233444
Q ss_pred -EEEcCCCcEEEEEc--CCeEEEEECCCCCcccC--CeEEe---cC---CCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 185 -IAFHAEGELLAVAS--GHKLYIWPYNNKEEASS--PIIVL---KT---RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 185 -VafSpdG~~LasgS--dd~V~IWDlrt~~~~~~--~~~~~---~h---~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
+.+..|...|++++ |+.|++||+++...... +.... .+ ...+.++.....|.+++++|.|+.|-.++..
T Consensus 222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~ 301 (720)
T KOG0321|consen 222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR 301 (720)
T ss_pred EEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence 55668889999988 45599999998764321 11111 12 3457788888889999999997776655433
Q ss_pred ee----eecCCC------ccc--CCCCceEEEEecCCCEEEEee------ccCcccCCCceEEEeEECC--CCcEEEEcc
Q 036953 254 MT----RATSPG------YLR--YPPPAVFVANAQSGDHVSLAA------ELPLMSSLPFLIVPSVSID--DSRIDLQHA 313 (792)
Q Consensus 254 ~~----l~t~sg------~~~--~p~~~~~l~~~ssG~~~~l~s------~l~~l~gh~~~VwdV~~Sp--DGr~lv~~~ 313 (792)
.. +....| +.+ ..+...++.-+..+.....+. ...++.||...|..|++.| ++..+
T Consensus 302 s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~---- 377 (720)
T KOG0321|consen 302 SLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVA---- 377 (720)
T ss_pred ccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCce----
Confidence 11 111111 111 122334444444433322221 4456778899998888865 35555
Q ss_pred ccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 314 SRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 314 ~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
+.+-|.++.-|++.++.
T Consensus 378 -----------------------TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 378 -----------------------TCSDDFRVKIWRLSNGL 394 (720)
T ss_pred -----------------------eeccCcceEEEeccCch
Confidence 46899999999997773
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=155.98 Aligned_cols=176 Identities=16% Similarity=0.262 Sum_probs=150.1
Q ss_pred CCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEE-cCCCCEEEEEECCCeEEEEECCCCc--EEE-------
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAF-SPDGRTLASTHGDHTVKIIDCQTGN--CLK------- 131 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLaf-SPDG~~LaSGS~DGtVrIWDl~tgk--~v~------- 131 (792)
.+..+++++.|.++++|+.... .+..|.+.|.|+++ -++...+|+|+-|+.|.|||++++. .+.
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 4558999999999999998755 46789999999999 7788899999999999999999772 222
Q ss_pred -Eec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEEC
Q 036953 132 -VLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPY 207 (792)
Q Consensus 132 -~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDl 207 (792)
.+. |+...|++++.++ .+..+++|+..+.+++||.++++.+..+ +|..-|..+..++||..+++++ |+.|++||+
T Consensus 164 ~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred ccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 233 7899999999999 8899999999999999999998766555 7999999999999999888888 556999999
Q ss_pred CCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 208 NNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 208 rt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
...++.. ....|.+.|.++..+|+=..+.+++.+..|
T Consensus 243 gqQrCl~---T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 243 GQQRCLA---TYIVHKEGVWALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred cccceee---eEEeccCceEEEeeCCCcceEEecCCCCcE
Confidence 9888754 456688889999999998888887775544
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-13 Score=145.97 Aligned_cols=201 Identities=18% Similarity=0.164 Sum_probs=158.1
Q ss_pred CCceeeeEEeeCCCceEeecCCCcee--------------------------ecCCcEEEEEeCCCeEEEEeccCC----
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSV--------------------------RDAKRGLVSWVEAESLRHLSAKYC---- 89 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv--------------------------~d~~~~L~S~s~d~sIrvWd~~t~---- 89 (792)
+.+.+.+++-+++++++++|..+.-+ +.+...+++++.|.++++|+....
T Consensus 201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve 280 (479)
T KOG0299|consen 201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE 280 (479)
T ss_pred ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence 33567788889999888887755443 123345788888889999988643
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
++.+|.+.|..+....-++.+-+|+.|.++++|++. .+....|.+|.+.+-|++|-. ...+++|+.||.|.||++.+
T Consensus 281 tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 281 TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred HHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeeecc
Confidence 567899998888887677777777789999999984 333456778999999999974 68999999999999999999
Q ss_pred CcEEEEec--c-----------CCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC
Q 036953 170 SECIGSCD--F-----------YRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 170 g~~v~t~~--h-----------~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG 235 (792)
.+++.+.. | +.+|++++..|...++++|+ ++.|++|-+..+-....++....-.+.|++++|+++|
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSG 437 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCC
Confidence 99887752 1 23899999999999999999 5559999998774333344455567889999999999
Q ss_pred CeEEEEEe
Q 036953 236 APFVLTAE 243 (792)
Q Consensus 236 ~~LlaS~s 243 (792)
++++++.+
T Consensus 438 k~ivagiG 445 (479)
T KOG0299|consen 438 KRIVAGIG 445 (479)
T ss_pred CEEEEecc
Confidence 98888765
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-13 Score=147.43 Aligned_cols=215 Identities=14% Similarity=0.126 Sum_probs=159.7
Q ss_pred CCCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cCC
Q 036953 21 LRRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVP 93 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~g 93 (792)
..++..++|....+..+. .....+.+++-+|+|. .++.+...+.|.+|.+.++. +..
T Consensus 58 ~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~----------------~l~ag~i~g~lYlWelssG~LL~v~~a 121 (476)
T KOG0646|consen 58 LKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGY----------------FLLAGTISGNLYLWELSSGILLNVLSA 121 (476)
T ss_pred ccCccccccccCchhhhhhhcccccceeeeecCCCce----------------EEEeecccCcEEEEEeccccHHHHHHh
Confidence 445567777665544333 1112234444444433 33344467788888888885 368
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---------CCcEEEEecCCCCCcEEEEEccC-CCCEEEEEeCCCeEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ---------TGNCLKVLSGHRRTPWVVRFHPL-RSEILASGSLDHEVR 163 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~---------tgk~v~~L~gH~~~VtsVafSP~-dg~lLaSgS~DgtVr 163 (792)
|-..|+|+.|+-||.+|++|+.||.|.+|++. +-++++.|..|.-+|+++...+. -..+++|+|.|.++|
T Consensus 122 HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 122 HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence 99999999999999999999999999999863 23578899999999999998872 346899999999999
Q ss_pred EEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCC--cc-----------cCCeEEecCCC--CeE
Q 036953 164 LWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKE--EA-----------SSPIIVLKTRR--SLR 227 (792)
Q Consensus 164 LWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~--~~-----------~~~~~~~~h~~--sVt 227 (792)
+||+..+..+.++.+...+.+++.+|-++.+++|+ +++|.+.++.... .. .......+|.. .|+
T Consensus 202 ~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred EEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 99999999999999999999999999999999998 5668888775433 00 01123445666 999
Q ss_pred EEEEccCCCeEEEEEeeCccccCC
Q 036953 228 AVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 228 sVafSPdG~~LlaS~s~~dLrs~d 251 (792)
+++.+-||..|+++..+..+..||
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEe
Confidence 999999999666665555444433
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.6e-12 Score=133.07 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=144.2
Q ss_pred CCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCE
Q 036953 77 EAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEI 152 (792)
Q Consensus 77 ~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~l 152 (792)
.|.+||..++.+++ +.||.+.|+.++.+|-+..+++++.|++|++||++..++...+.-...+| ++|.| .+-+
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp-~GLi 154 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDP-EGLI 154 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECC-CCcE
Confidence 35666666666553 57999999999999988999999999999999999888877776444444 78999 8889
Q ss_pred EEEEeCCCeEEEEECCC--CcEEEEec----cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecC--C
Q 036953 153 LASGSLDHEVRLWDANT--SECIGSCD----FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKT--R 223 (792)
Q Consensus 153 LaSgS~DgtVrLWDl~t--g~~v~t~~----h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h--~ 223 (792)
+|.+...+.|+|||++. +.+..++. .....+.+.|+|||++|+.+.++. +++.|.-++.... ....... .
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~-tfs~~~~~~~ 233 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS-TFSGYPNAGN 233 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee-eEeeccCCCC
Confidence 99988888999999996 45555553 356788999999999988888555 9999998887443 1111111 2
Q ss_pred CCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEEC
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSI 303 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~S 303 (792)
.+ -...|.||+++++.+..+. .+.+|..++|+......+. +.+.+.++.|+
T Consensus 234 ~~-~~a~ftPds~Fvl~gs~dg-----------------------~i~vw~~~tg~~v~~~~~~-----~~~~~~~~~fn 284 (311)
T KOG1446|consen 234 LP-LSATFTPDSKFVLSGSDDG-----------------------TIHVWNLETGKKVAVLRGP-----NGGPVSCVRFN 284 (311)
T ss_pred cc-eeEEECCCCcEEEEecCCC-----------------------cEEEEEcCCCcEeeEecCC-----CCCCccccccC
Confidence 23 4778999999877766544 2444555555554444432 34445555566
Q ss_pred CCCcEEE
Q 036953 304 DDSRIDL 310 (792)
Q Consensus 304 pDGr~lv 310 (792)
|---.++
T Consensus 285 P~~~mf~ 291 (311)
T KOG1446|consen 285 PRYAMFV 291 (311)
T ss_pred Cceeeee
Confidence 6555554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-13 Score=138.79 Aligned_cols=218 Identities=15% Similarity=0.170 Sum_probs=165.1
Q ss_pred CCCCCCceEeeecccc------eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC--
Q 036953 19 NHLRRRARNVSRLLAH------REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP-- 90 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~------rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~-- 90 (792)
.+...+.++||..... .++..+...+.+++|-.. ..+..|.+++.|+.+.+|+...++
T Consensus 28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP--------------k~G~iLAScsYDgkVIiWke~~g~w~ 93 (299)
T KOG1332|consen 28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP--------------KFGTILASCSYDGKVIIWKEENGRWT 93 (299)
T ss_pred eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc--------------ccCcEeeEeecCceEEEEecCCCchh
Confidence 4556677788865433 245566777888888543 123467788899999999987663
Q ss_pred ----cCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCC---cEEEEecCCCCCcEEEEEccC--CC---------
Q 036953 91 ----LVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTG---NCLKVLSGHRRTPWVVRFHPL--RS--------- 150 (792)
Q Consensus 91 ----L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tg---k~v~~L~gH~~~VtsVafSP~--dg--------- 150 (792)
...|...|++++|.| -|-.|++++.||.|.|.++++. ...+...+|.-.|++++|.|. .+
T Consensus 94 k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~ 173 (299)
T KOG1332|consen 94 KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAA 173 (299)
T ss_pred hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccc
Confidence 357999999999999 5678999999999999998754 233456789999999999982 12
Q ss_pred --CEEEEEeCCCeEEEEECCCCcEE--EEe-ccCCCeeEEEEcCCC----cEEEEEc-CCeEEEEECCCCCcccCCeEEe
Q 036953 151 --EILASGSLDHEVRLWDANTSECI--GSC-DFYRPIASIAFHAEG----ELLAVAS-GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 151 --~lLaSgS~DgtVrLWDl~tg~~v--~t~-~h~s~V~sVafSpdG----~~LasgS-dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
+.|++|+.|+.|++|+..+++-+ .++ .|.+.|+.++|.|.- .+|++++ |+++.||-.+..........+.
T Consensus 174 ~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~ 253 (299)
T KOG1332|consen 174 KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE 253 (299)
T ss_pred ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccc
Confidence 57999999999999999886432 223 589999999999964 5799999 5569999887443333334444
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
...+.++.+.|+..|+.|.++++++.+..+
T Consensus 254 ~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 254 EFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred cCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 567889999999999999888887765543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-13 Score=141.67 Aligned_cols=165 Identities=17% Similarity=0.248 Sum_probs=140.5
Q ss_pred CcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-cEEEEecCCCCCcEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG-NCLKVLSGHRRTPWVV 143 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg-k~v~~L~gH~~~VtsV 143 (792)
+..+++++.|.+..+||++++ .|.||....+-+.-+|..+++++.+.|.+.++||+... ..+..|+||...|+++
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~ 363 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSV 363 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEE
Confidence 345777888899999999877 57899999999999999999999999999999998743 4578899999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCe-EEe
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANT-SECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPI-IVL 220 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~t-g~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~-~~~ 220 (792)
.|+- +..+++|+.|.+||+||+++ ..++.++...++++.++.+..+++|+.--|++ |++||++.......|. ...
T Consensus 364 vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 364 VFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred EEec--CCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccc
Confidence 9986 56899999999999999998 56889999999999999999999999988776 9999998777554332 345
Q ss_pred cCCCCeEEEEEccCC
Q 036953 221 KTRRSLRAVHFHPHA 235 (792)
Q Consensus 221 ~h~~sVtsVafSPdG 235 (792)
+|..-|++++|..+-
T Consensus 442 gHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEH 456 (481)
T ss_pred ccceeeeeeeccccC
Confidence 688899999997543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-13 Score=146.40 Aligned_cols=173 Identities=18% Similarity=0.224 Sum_probs=142.9
Q ss_pred CcEEEEEeCCCeEEEEeccCC-------------------------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC-------------------------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKII 122 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~-------------------------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIW 122 (792)
+..+..+..+..|.+||.... .-.+|.+.|..++|+. -.+.||||+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 345666777888999987411 1236999999999998 45688999999999999
Q ss_pred ECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEeccCCCeeEEEEcCCCcE-EEEEc-C
Q 036953 123 DCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-SECIGSCDFYRPIASIAFHAEGEL-LAVAS-G 199 (792)
Q Consensus 123 Dl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~v~t~~h~s~V~sVafSpdG~~-LasgS-d 199 (792)
|+.++++..++..|.+.|.++.|+|..+.+|++|+.|++|++.|.+. ...-..+...+.|..++|++.... ++++. +
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence 99999999999999999999999999999999999999999999995 333445678899999999998754 44444 4
Q ss_pred CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 200 HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 200 d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+.|+-+|+|..... ......|.+.|.++++++.-..++++++
T Consensus 352 G~v~~~D~R~~~~~--vwt~~AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKP--VWTLKAHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred ceEEeeecCCCCCc--eeEEEeccCCcceEEecCCCCcceeecc
Confidence 55999999988632 3466779999999999999888888776
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-11 Score=127.45 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=117.4
Q ss_pred eCCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC
Q 036953 76 VEAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGRTLASTHGDH-TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE 151 (792)
Q Consensus 76 s~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~~LaSGS~DG-tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~ 151 (792)
..++.+++|+..+.+.. .+...+.+++|+|+++.+++++.++ .+.+||..+++.+..+. ....+..+.|+| +++
T Consensus 92 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~ 169 (300)
T TIGR03866 92 EDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTA-DGK 169 (300)
T ss_pred CCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECC-CCC
Confidence 45778889988765321 2234468899999999999988775 56778998887766554 233567899999 777
Q ss_pred EEE-EEeCCCeEEEEECCCCcEEEEeccC--------CCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEe
Q 036953 152 ILA-SGSLDHEVRLWDANTSECIGSCDFY--------RPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 152 lLa-SgS~DgtVrLWDl~tg~~v~t~~h~--------s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
+++ ++..++.|++||+++++.+..+... .....++|+|++++++++. ++.|.+||+++.+... ..
T Consensus 170 ~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~----~~ 245 (300)
T TIGR03866 170 ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD----YL 245 (300)
T ss_pred EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE----EE
Confidence 775 5556999999999998877665321 1235688999999865543 5569999998766432 22
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.+...+.+++|+|+|+.|+++..
T Consensus 246 ~~~~~~~~~~~~~~g~~l~~~~~ 268 (300)
T TIGR03866 246 LVGQRVWQLAFTPDEKYLLTTNG 268 (300)
T ss_pred EeCCCcceEEECCCCCEEEEEcC
Confidence 34457899999999998876653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-12 Score=135.81 Aligned_cols=231 Identities=16% Similarity=0.137 Sum_probs=155.0
Q ss_pred CcEEEEEeCCCeEEEEeccCC--------CcCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCC---------CcE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC--------PLVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQT---------GNC 129 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~--------~L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~t---------gk~ 129 (792)
+.++.+++.|+++++|+.+.. ..+.|.+.|..+.|.+ -|+.+|+++.|++++||.-.. -..
T Consensus 25 GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~ 104 (361)
T KOG2445|consen 25 GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR 104 (361)
T ss_pred CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEE
Confidence 446777788999999996422 3568999999999987 689999999999999997521 123
Q ss_pred EEEecCCCCCcEEEEEcc-CCCCEEEEEeCCCeEEEEECCCCcEEE------Eec--------cCCCeeEEEEcCCC---
Q 036953 130 LKVLSGHRRTPWVVRFHP-LRSEILASGSLDHEVRLWDANTSECIG------SCD--------FYRPIASIAFHAEG--- 191 (792)
Q Consensus 130 v~~L~gH~~~VtsVafSP-~dg~lLaSgS~DgtVrLWDl~tg~~v~------t~~--------h~s~V~sVafSpdG--- 191 (792)
..++......|+++.|.| ..+-.|++++.||++|||+...---+. .+. +.....|+.|++..
T Consensus 105 ~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~ 184 (361)
T KOG2445|consen 105 RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE 184 (361)
T ss_pred EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccC
Confidence 456677888999999999 456779999999999999876532222 122 45567899999753
Q ss_pred cEEEEEcCC------eEEEEECCCCC-cccCCeEEecCCCCeEEEEEccCCC---eEE-EEEeeCccccCCCceeeecCC
Q 036953 192 ELLAVASGH------KLYIWPYNNKE-EASSPIIVLKTRRSLRAVHFHPHAA---PFV-LTAEVNDLDSSDSSMTRATSP 260 (792)
Q Consensus 192 ~~LasgSdd------~V~IWDlrt~~-~~~~~~~~~~h~~sVtsVafSPdG~---~Ll-aS~s~~dLrs~d~~~~l~t~s 260 (792)
.+|++|++. +++||...... .......+..+.++|++++|.|+-- .++ +++++. |+.+.-+.......
T Consensus 185 p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~ 263 (361)
T KOG2445|consen 185 PLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIE 263 (361)
T ss_pred ceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhh
Confidence 689999976 68999876554 2222334457899999999999632 233 344333 55433222111000
Q ss_pred CcccCCCCceEEEEecCCCE-EEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 261 GYLRYPPPAVFVANAQSGDH-VSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 261 g~~~~p~~~~~l~~~ssG~~-~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.. .......-++. +.+. ..+.+|.+.||.+.+.=.|..|.
T Consensus 264 ~e-------e~~~~~~~~~l~v~~v---s~~~~H~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 264 EE-------EVLAPDLMTDLPVEKV---SELDDHNGEVWRVRWNMTGTILS 304 (361)
T ss_pred hh-------cccCCCCccccceEEe---eeccCCCCceEEEEEeeeeeEEe
Confidence 00 00000000111 1111 23677999999999999999998
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.8e-12 Score=139.03 Aligned_cols=236 Identities=15% Similarity=0.196 Sum_probs=170.0
Q ss_pred CCCceEeeecccceeeC-------CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----C
Q 036953 22 RRRARNVSRLLAHREIS-------PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----P 90 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels-------~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~ 90 (792)
.++....|......... ...|+|.++.|.+++. ++++..++.|.+|+..++ +
T Consensus 220 Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-----------------viTgDS~G~i~Iw~~~~~~~~k~ 282 (626)
T KOG2106|consen 220 GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-----------------VITGDSGGNILIWSKGTNRISKQ 282 (626)
T ss_pred CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-----------------EEeecCCceEEEEeCCCceEEeE
Confidence 45556666544332222 2236788888877765 345566777788877655 3
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE----------------------------------------E
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC----------------------------------------L 130 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~----------------------------------------v 130 (792)
...|.++|.++....+|..|- |+.|..|..||-+-.+. .
T Consensus 283 ~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 283 VHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred eeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 348999999999999987555 99999999998431100 0
Q ss_pred EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCC
Q 036953 131 KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNN 209 (792)
Q Consensus 131 ~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt 209 (792)
....+|....+.++.+| +.+.++||+.|+.+++|+ ..+++++.....++.++.|+|.| .++.|. .+...+.|..+
T Consensus 362 ~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET 437 (626)
T ss_pred EEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc
Confidence 12247888999999999 889999999999999999 77888888889999999999999 888888 56699999988
Q ss_pred CCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCc
Q 036953 210 KEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPL 289 (792)
Q Consensus 210 ~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~ 289 (792)
...+ .......+++.++|+|+|.+|++.+.+.. +++...+.+.+..... ..
T Consensus 438 ~~lv----~~~~d~~~ls~v~ysp~G~~lAvgs~d~~-----------------------iyiy~Vs~~g~~y~r~--~k 488 (626)
T KOG2106|consen 438 QDLV----TIHTDNEQLSVVRYSPDGAFLAVGSHDNH-----------------------IYIYRVSANGRKYSRV--GK 488 (626)
T ss_pred ceeE----EEEecCCceEEEEEcCCCCEEEEecCCCe-----------------------EEEEEECCCCcEEEEe--ee
Confidence 6543 23334889999999999998887775442 2222223322222221 12
Q ss_pred ccCCCceEEEeEECCCCcEEE
Q 036953 290 MSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 290 l~gh~~~VwdV~~SpDGr~lv 310 (792)
.. -..|.-++||+|+++++
T Consensus 489 ~~--gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 489 CS--GSPITHLDWSSDSQFLV 507 (626)
T ss_pred ec--CceeEEeeecCCCceEE
Confidence 22 27888999999999999
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-12 Score=137.01 Aligned_cols=146 Identities=25% Similarity=0.355 Sum_probs=123.1
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC--EEEEEeCCCeEEEEECC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE--ILASGSLDHEVRLWDAN 168 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~--lLaSgS~DgtVrLWDl~ 168 (792)
+..|...+++++.+ +.++++|+.|.+|+|||+...+.+..+-.|.+.|+++.|.+ .-. .|++|+.||.|.+|+..
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence 46799999999995 99999999999999999999999999999999999999988 443 89999999999999999
Q ss_pred CCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 169 TSECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 169 tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.-.++.++. |.+.|+.++.||.+++-++-+ |..+++||+-+++... ...-...-+.|.|+|.|.++++...
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~----v~~L~~~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF----VLNLKNKATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce----eeccCCcceeeEEcCCCCEEEEEec
Confidence 988888884 888999999999999866655 5559999998887543 2222223344999999998877664
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-12 Score=133.40 Aligned_cols=248 Identities=11% Similarity=0.108 Sum_probs=179.9
Q ss_pred CceEeeecccceeeC-----CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCC
Q 036953 24 RARNVSRLLAHREIS-----PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPP 95 (792)
Q Consensus 24 ~~r~V~~l~~~rels-----~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~ 95 (792)
+.+++|+......+. ...+.+..+.|+.++. ++++++.|+.+++||+.+++ +..|.
T Consensus 50 ~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs----------------kVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd 113 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS----------------KVFSGGCDKQAKLWDLASGQVSQVAAHD 113 (347)
T ss_pred CceEEEEEecCCcccchhhhccCCCeEEEEEccCCc----------------eEEeeccCCceEEEEccCCCeeeeeecc
Confidence 456777765532222 3445666777776654 56777889999999998875 45799
Q ss_pred CCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 96 RSTIAAAFSPDGR--TLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 96 ~~V~sLafSPDG~--~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
++|.++.|-+... .|++||.|++|+.||.+..+++.++. -.+.+.++..- ..+++.+..++.|.+|+++++...
T Consensus 114 ~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te 189 (347)
T KOG0647|consen 114 APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTE 189 (347)
T ss_pred cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcch
Confidence 9999999988544 89999999999999999999888886 55677777664 367888889999999999876433
Q ss_pred EEe---ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCC---------CCeEEEEEccCCCeEEE
Q 036953 174 GSC---DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTR---------RSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 174 ~t~---~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~---------~sVtsVafSPdG~~Lla 240 (792)
... ..+-.+++|+..+|.+..+.|+ ++++.|..++.+.... -..+.-|+ ..|++|+|||.-..|++
T Consensus 190 ~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~-nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 190 FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD-NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC-ceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 221 2445688999999988888888 7888888877653211 11222232 25789999999998999
Q ss_pred EEeeCccccCCCc--eeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCc
Q 036953 241 TAEVNDLDSSDSS--MTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPF 295 (792)
Q Consensus 241 S~s~~dLrs~d~~--~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~ 295 (792)
.+++..+..||.- .++.+.. ..+.+..+.....+|.......+.-..+||++
T Consensus 269 aGsDGtf~FWDkdar~kLk~s~---~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~ 322 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDARTKLKTSE---THPQPITCCSFNRNGSIFAYALGYDWSKGHEG 322 (347)
T ss_pred ecCCceEEEecchhhhhhhccC---cCCCccceeEecCCCCEEEEEeeccccccccc
Confidence 9998877766654 4555433 33566777777788887777666666677765
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-13 Score=141.99 Aligned_cols=151 Identities=18% Similarity=0.233 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD 177 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~ 177 (792)
..|+.|++.|.+||+|..||.|.|||+.+...-+.|.+|..+|++++|++ ++++|+|++.|..|++||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 78999999999999999999999999999998889999999999999999 99999999999999999999998887776
Q ss_pred cCCCeeEEE-----------------------------------------------EcCCCcEEEEEc-CCeEEEEECCC
Q 036953 178 FYRPIASIA-----------------------------------------------FHAEGELLAVAS-GHKLYIWPYNN 209 (792)
Q Consensus 178 h~s~V~sVa-----------------------------------------------fSpdG~~LasgS-dd~V~IWDlrt 209 (792)
+.++|+.+. |++.|+++++|. .+++.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 655554433 455577788776 45588888888
Q ss_pred CCcccCCeEEecC-CCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 210 KEEASSPIIVLKT-RRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 210 ~~~~~~~~~~~~h-~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
.+... ...-. ...|.++.|+..|++++..+++.-||..+.
T Consensus 185 ~e~va---s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 185 LECVA---SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred heeee---eeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 76543 12222 367888999999999988888766665443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.7e-13 Score=153.75 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=152.7
Q ss_pred ecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEe
Q 036953 58 CGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVL 133 (792)
Q Consensus 58 ~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L 133 (792)
.|....++......++++..++++..+...... +....-++.+++|+.+|+.++.|+.|-.|++-++.+......+
T Consensus 55 ~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l 134 (933)
T KOG1274|consen 55 SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL 134 (933)
T ss_pred cCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee
Confidence 344445555566688999999999999886553 3455677999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------cCCCeeEEEEcCCC-cEEEEEcCCeEE
Q 036953 134 SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD---------FYRPIASIAFHAEG-ELLAVASGHKLY 203 (792)
Q Consensus 134 ~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~---------h~s~V~sVafSpdG-~~LasgSdd~V~ 203 (792)
.+|.++|.++.|+| ++++||+.+-||+|++||+.++.+..++. ....+..++|+|+| ++++.+.++.|+
T Consensus 135 rgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVK 213 (933)
T ss_pred cccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEE
Confidence 99999999999999 99999999999999999999987776652 13456789999995 555556688899
Q ss_pred EEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcccc
Q 036953 204 IWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDS 249 (792)
Q Consensus 204 IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs 249 (792)
+|+....+... .+....+...+..+.|+|.|+||+++.-++.|-.
T Consensus 214 vy~r~~we~~f-~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~v 258 (933)
T KOG1274|consen 214 VYSRKGWELQF-KLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILV 258 (933)
T ss_pred EEccCCceehe-eecccccccceEEEEEcCCCcEEeeeccCCcEEE
Confidence 99998887543 2222334455999999999999988876544333
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.6e-13 Score=140.51 Aligned_cols=173 Identities=18% Similarity=0.228 Sum_probs=136.5
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCCcCCCCC----CeEEEEEcCCCCEEEEEECCCeEEEEECC---CC-----cEEEEec
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCPLVPPPR----STIAAAFSPDGRTLASTHGDHTVKIIDCQ---TG-----NCLKVLS 134 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~----~V~sLafSPDG~~LaSGS~DGtVrIWDl~---tg-----k~v~~L~ 134 (792)
++...|++++.|..|.+|+.+ +++.+|-+ .-+..+.||+|+++++++.--.|++|..- .| +.+..++
T Consensus 197 ~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence 456678999999999999998 55544433 35678899999999999998889999863 22 2456788
Q ss_pred CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-------cEEEEe-----ccCCCeeEEEEcCCCcEEEEEcCCeE
Q 036953 135 GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-------ECIGSC-----DFYRPIASIAFHAEGELLAVASGHKL 202 (792)
Q Consensus 135 gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-------~~v~t~-----~h~s~V~sVafSpdG~~LasgSdd~V 202 (792)
||+..|..++|++ +...++|.+.||++++||..-. +.++.. ...+....+..+|.|+.|+.+....|
T Consensus 276 GH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l 354 (420)
T KOG2096|consen 276 GHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDL 354 (420)
T ss_pred cchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCce
Confidence 9999999999999 9999999999999999998632 222222 12334458999999999999988789
Q ss_pred EEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 203 YIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 203 ~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
++|..++++... .....|...|.++.|+++|+++++++.
T Consensus 355 ~~~~se~g~~~~--~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 355 KVFASEDGKDYP--ELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred EEEEcccCccch--hHHHhhcCceeeEEecCCCcEEeeecc
Confidence 999999876532 334458899999999999996665553
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-13 Score=163.16 Aligned_cols=198 Identities=17% Similarity=0.193 Sum_probs=149.6
Q ss_pred ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC---C-------CcCCCCCCeEEEEEcC-CCCEE
Q 036953 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY---C-------PLVPPPRSTIAAAFSP-DGRTL 110 (792)
Q Consensus 42 k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t---~-------~L~gH~~~V~sLafSP-DG~~L 110 (792)
.+.++++|.+.+.. ..+.|+.+.+||.|.+|+... + ++..|.+.|..+.|++ .++.|
T Consensus 65 ~rF~kL~W~~~g~~------------~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlL 132 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSH------------SHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLL 132 (1049)
T ss_pred ccceeeeecccCCC------------ccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCcee
Confidence 37888999888652 113566667899999998754 1 4578999999999999 66699
Q ss_pred EEEECCCeEEEEECCCCcEEEEe--cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC---CCeeEE
Q 036953 111 ASTHGDHTVKIIDCQTGNCLKVL--SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY---RPIASI 185 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~v~~L--~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~---s~V~sV 185 (792)
|+|+.||.|.|||++.-+.-..+ ..-...|.+++|+.+..++|++++.++++.+||++..+++..+... ..+..+
T Consensus 133 ASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVL 212 (1049)
T ss_pred eccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeee
Confidence 99999999999999864433333 1245689999999878889999999999999999999888777432 347899
Q ss_pred EEcCCC-cEEEEEc-CCe---EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeE-EEEEeeCccccCCCc
Q 036953 186 AFHAEG-ELLAVAS-GHK---LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPF-VLTAEVNDLDSSDSS 253 (792)
Q Consensus 186 afSpdG-~~LasgS-dd~---V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~L-laS~s~~dLrs~d~~ 253 (792)
.|||+. ..|++++ ++. |.+||+|...... .....|...|.++.|++.+..+ ++++.+.++-.|+..
T Consensus 213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~--k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL--KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred eeCCCCceeeeeecCCCCCceeEeecccccCCch--hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 999998 4566665 443 9999998776432 2335799999999999988545 455556666555443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.9e-13 Score=151.20 Aligned_cols=168 Identities=21% Similarity=0.226 Sum_probs=140.0
Q ss_pred CcEEEEEeCCCeEEEEeccCC--CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 036953 69 KRGLVSWVEAESLRHLSAKYC--PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH 146 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~--~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafS 146 (792)
+..+++++.|.++++|..... .+.+|...|.++++-|++ .++||+.|++|++|.- ++.+++|.+|...|+++++-
T Consensus 112 ~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl 188 (745)
T KOG0301|consen 112 DGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVL 188 (745)
T ss_pred cCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEe
Confidence 445899999999999987644 588999999999999877 8999999999999985 78899999999999999998
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC-C
Q 036953 147 PLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT-R 223 (792)
Q Consensus 147 P~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h-~ 223 (792)
+ +..++||+.||.|++||+ +++++..+ +|.+.+.+++...++..+++++ |++++||+.. ++. ....+ .
T Consensus 189 ~--~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~----q~I~lPt 259 (745)
T KOG0301|consen 189 D--DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECV----QVITLPT 259 (745)
T ss_pred c--CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceE----EEEecCc
Confidence 7 557999999999999999 66666665 7999999999777777888877 5569999986 222 23333 4
Q ss_pred CCeEEEEEccCCCeEEEEEeeCcccc
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLDS 249 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLrs 249 (792)
..|+++++-++|+ +++++++.-++.
T Consensus 260 tsiWsa~~L~NgD-Ivvg~SDG~VrV 284 (745)
T KOG0301|consen 260 TSIWSAKVLLNGD-IVVGGSDGRVRV 284 (745)
T ss_pred cceEEEEEeeCCC-EEEeccCceEEE
Confidence 4899999999999 788888776664
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-12 Score=149.00 Aligned_cols=213 Identities=11% Similarity=0.093 Sum_probs=164.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG-NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg-k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
..|..+-+.++|.|+|++|++++.||.|++|+.... +.-..+.-+...|.+++.. ..+|++|+.+++|.+|....+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCCC
Confidence 468889999999999999999999999999998765 3223333388888888875 469999999999999999988
Q ss_pred cEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 171 ECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 171 ~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
+.-..+ .+.-+++.++|+-+|++++.|+++. |++.++...... ....+|..+|.+|.|+|.+++|+++..+..+.
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~---~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE---KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh---eeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 766555 5778999999999999999999887 999999887754 36788999999999999999888877755554
Q ss_pred cCCCc-----eee-----------ecCCCcccCCCCceEEEEecCCCEEEEeecc-------CcccCCCceEEEeEECCC
Q 036953 249 SSDSS-----MTR-----------ATSPGYLRYPPPAVFVANAQSGDHVSLAAEL-------PLMSSLPFLIVPSVSIDD 305 (792)
Q Consensus 249 s~d~~-----~~l-----------~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l-------~~l~gh~~~VwdV~~SpD 305 (792)
.|+.. ..+ ........|.+....+++...++++.+.... -..+.+...+.++.|||+
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 43321 111 1112245677776667777777787776611 122334555999999999
Q ss_pred CcEEE
Q 036953 306 SRIDL 310 (792)
Q Consensus 306 Gr~lv 310 (792)
|+||+
T Consensus 244 G~YiA 248 (933)
T KOG1274|consen 244 GKYIA 248 (933)
T ss_pred CcEEe
Confidence 99999
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=138.94 Aligned_cols=178 Identities=20% Similarity=0.256 Sum_probs=143.3
Q ss_pred CCcEEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSG 135 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~g 135 (792)
.+..|.++++|.++.+|++..+ .|.+|.+.|--++|+| -.+.|++++.|.+|.|||+.+|+.+..+.
T Consensus 93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~- 171 (472)
T KOG0303|consen 93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD- 171 (472)
T ss_pred CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-
Confidence 3556778889999999988533 4679999999999999 66789999999999999999999888887
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccC-CCeeEEEEcCCCcEEEEEc----CCeEEEEECCC
Q 036953 136 HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFY-RPIASIAFHAEGELLAVAS----GHKLYIWPYNN 209 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~-s~V~sVafSpdG~~LasgS----dd~V~IWDlrt 209 (792)
|...|+++.|+- |+.+|+|.+.|+.||+||.++++.+..- .|. .....+.|-.+|+++.+|- +..+-+||-..
T Consensus 172 hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 172 HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence 999999999999 9999999999999999999999998876 344 3456778888999666664 23399999887
Q ss_pred CCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-eCccc
Q 036953 210 KEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDLD 248 (792)
Q Consensus 210 ~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dLr 248 (792)
.++.. ....+.....|.---|.+|...+.++++ +..|+
T Consensus 251 l~eP~-~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 251 LEEPI-ALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred ccCcc-eeEEeccCCceEEeeecCCCCEEEEEecCCcceE
Confidence 76542 3344556677877788998887766665 33443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.2e-12 Score=132.19 Aligned_cols=182 Identities=19% Similarity=0.311 Sum_probs=137.0
Q ss_pred eeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 036953 44 VPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTV 119 (792)
Q Consensus 44 V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtV 119 (792)
..+..|++.|.+++.| ..++.+.+||..+. .+.+|..+|++++||+||++|+++|.|..|
T Consensus 26 a~~~~Fs~~G~~lAvG----------------c~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVG----------------CANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceEEeccCcceeeee----------------ccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence 5667777776666555 56778888888765 467999999999999999999999999999
Q ss_pred EEEECCCCcEEEEecCCCCCcEEEEEccC----------------------------------------------CCCEE
Q 036953 120 KIIDCQTGNCLKVLSGHRRTPWVVRFHPL----------------------------------------------RSEIL 153 (792)
Q Consensus 120 rIWDl~tgk~v~~L~gH~~~VtsVafSP~----------------------------------------------dg~lL 153 (792)
++||+..|.+++.+. ...+|+.+.|+|. .++++
T Consensus 90 ~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred EEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEE
Confidence 999999888776554 2233333333331 46889
Q ss_pred EEEeCCCeEEEEECCCCcEEEEeccC--CCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCC------cccCCeEEe---c
Q 036953 154 ASGSLDHEVRLWDANTSECIGSCDFY--RPIASIAFHAEGELLAVASGHK-LYIWPYNNKE------EASSPIIVL---K 221 (792)
Q Consensus 154 aSgS~DgtVrLWDl~tg~~v~t~~h~--s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~------~~~~~~~~~---~ 221 (792)
++|...|.+.++|..+.+++..+... ..|..+.++..|+.|+.-+.++ |+.|+++.-. +.. +.... -
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e-~~~K~qDvV 247 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE-PEHKLQDVV 247 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC-hhHHHHHHH
Confidence 99999999999999999999988633 6899999999999999988665 9999986221 111 11111 1
Q ss_pred CCCCeEEEEEccCCCeEEEEEe
Q 036953 222 TRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 222 h~~sVtsVafSPdG~~LlaS~s 243 (792)
.+-.-.+++|+.+|.++++++.
T Consensus 248 Nk~~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 248 NKLQWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred hhhhhhheeecCCccEEEeccc
Confidence 3445678999999998887664
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=145.72 Aligned_cols=245 Identities=16% Similarity=0.196 Sum_probs=165.7
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCe
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHT 118 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGt 118 (792)
.+..+++-|+|..+ ++ ..+..+.++|...+ ++++|.+.|+|++|+.||+++++|+.|+.
T Consensus 14 ci~d~afkPDGsqL---------------~l--AAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~ 76 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQL---------------IL--AAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKS 76 (1081)
T ss_pred chheeEECCCCceE---------------EE--ecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCcee
Confidence 56667777776532 11 12344566666544 67899999999999999999999999999
Q ss_pred EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc
Q 036953 119 VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 119 VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS 198 (792)
|.||+-.-.. +..+ .|...|.|+.|+| -.+.|+||+.. ..-+|....+ .+........+.+++|..||++|+.|-
T Consensus 77 VI~W~~klEG-~LkY-SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 77 VIIWTSKLEG-ILKY-SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred EEEecccccc-eeee-ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEec
Confidence 9999854322 2223 5999999999999 88899999865 4678877653 333344567899999999999999998
Q ss_pred -CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe---EEEEEeeCcc--c--cCCCc-----eeeecCCCcccC
Q 036953 199 -GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP---FVLTAEVNDL--D--SSDSS-----MTRATSPGYLRY 265 (792)
Q Consensus 199 -dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~---LlaS~s~~dL--r--s~d~~-----~~l~t~sg~~~~ 265 (792)
+++|.|-+-...+... .....+..++|.+++|+|.... =+.+.-+|.- . +.+.. ..+...+-+..|
T Consensus 152 ~nGTIsiRNk~gEek~~-I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisY 230 (1081)
T KOG1538|consen 152 FNGTISIRNKNGEEKVK-IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISY 230 (1081)
T ss_pred cCceEEeecCCCCcceE-EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhee
Confidence 5668887654333222 1112235789999999996431 1111112211 1 11111 112222335556
Q ss_pred CCCceEEEEecCCCEEEEee----ccCcccCCCceEEEeEECCCCcEEE
Q 036953 266 PPPAVFVANAQSGDHVSLAA----ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 266 p~~~~~l~~~ssG~~~~l~s----~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.++..++..+.+++..+++. -+.++.....+||.|...|+|++++
T Consensus 231 f~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred ccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEE
Confidence 66777777777777777776 3345566778999999999999998
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-11 Score=140.96 Aligned_cols=288 Identities=12% Similarity=0.073 Sum_probs=184.0
Q ss_pred CCCceEeeecccceeeCCCC---ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc---CCC-
Q 036953 22 RRRARNVSRLLAHREISPKT---KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL---VPP- 94 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels~~t---k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L---~gH- 94 (792)
..+-.++|+....+.+.... ..+++..=+|-..+++.| ..+++|.+++++..+. ..|
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG----------------~~~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIG----------------LENGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEe----------------ccCceEEEEEcccCcEEEEEEcc
Confidence 45556778777777666322 344555444444444444 4556666666655431 124
Q ss_pred CCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC--C
Q 036953 95 PRSTIAAAFSPDGRT-LASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT--S 170 (792)
Q Consensus 95 ~~~V~sLafSPDG~~-LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t--g 170 (792)
.+.|+.++|.-||.. +++|+..|.+.+||++..+....+. .|.+.|....|-| ....+++.+.|+.+++|=..+ |
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg 322 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDG 322 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCC
Confidence 378999999999985 5666677999999998777666555 6777777777777 667777777777766662110 0
Q ss_pred ----------------------------------------------------c---------------------EE----
Q 036953 171 ----------------------------------------------------E---------------------CI---- 173 (792)
Q Consensus 171 ----------------------------------------------------~---------------------~v---- 173 (792)
+ ++
T Consensus 323 ~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa 402 (910)
T KOG1539|consen 323 VPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFA 402 (910)
T ss_pred cchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeee
Confidence 0 00
Q ss_pred ----------------------------------EEeccC------CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCc
Q 036953 174 ----------------------------------GSCDFY------RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEE 212 (792)
Q Consensus 174 ----------------------------------~t~~h~------s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~ 212 (792)
..+.+. ..+.+++.++.|++.+.|+ .+.|-+|+++++-.
T Consensus 403 ~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~ 482 (910)
T KOG1539|consen 403 FENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH 482 (910)
T ss_pred cccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee
Confidence 000011 2356788888899888887 45599999988865
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceee-------ecCCCcccCCCCceEEEEecCCCEEEEee
Q 036953 213 ASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTR-------ATSPGYLRYPPPAVFVANAQSGDHVSLAA 285 (792)
Q Consensus 213 ~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l-------~t~sg~~~~p~~~~~l~~~ssG~~~~l~s 285 (792)
.........|..+|+.++..-.++.+++++.+..+..|+..... .......-+......++.+.++-.+.+..
T Consensus 483 r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 483 RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 43122234689999999999888888888887777766654322 11111111111122222222222233222
Q ss_pred -----ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 286 -----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 286 -----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
-.+-+.||..+|.+.+||||||+|+ +++-|.||.-||+-.+
T Consensus 563 ~~t~kvvR~f~gh~nritd~~FS~DgrWli--------------------------sasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 563 VVTRKVVREFWGHGNRITDMTFSPDGRWLI--------------------------SASMDSTIRTWDLPTG 608 (910)
T ss_pred chhhhhhHHhhccccceeeeEeCCCCcEEE--------------------------EeecCCcEEEEeccCc
Confidence 1234678999999999999999999 8899999999998776
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-12 Score=146.83 Aligned_cols=222 Identities=14% Similarity=0.144 Sum_probs=178.6
Q ss_pred CCcEEEEEeCCCeEEEEeccCCCc----------CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEe---c
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCPL----------VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVL---S 134 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~L----------~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L---~ 134 (792)
+...+.....+..++.|+.+...+ +.-...+++++.++.|++.+.|...|.|-+||+++|-....| +
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence 344444555667788888865533 233467899999999999999999999999999999888888 5
Q ss_pred CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcc
Q 036953 135 GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEA 213 (792)
Q Consensus 135 gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~ 213 (792)
.|.++|++++... -++.+++++.+|.++.||.+++..+..+.....+..+.++.....++.+.++- |.++|..+.+..
T Consensus 491 ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv 569 (910)
T KOG1539|consen 491 AHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV 569 (910)
T ss_pred cccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence 8999999999987 77899999999999999999999999999999999999999999999988766 999999888755
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCce-------eeecCCCcccCCCCceEEEEecCC-CEEEEee
Q 036953 214 SSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSM-------TRATSPGYLRYPPPAVFVANAQSG-DHVSLAA 285 (792)
Q Consensus 214 ~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~-------~l~t~sg~~~~p~~~~~l~~~ssG-~~~~l~s 285 (792)
+ .+.+|.+.|++++|||||+.+++++-+..|+.||-.. .+....-...+.|..-+++..+.+ .-+.+++
T Consensus 570 R---~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 570 R---EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred H---HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 4 5667999999999999999999999888888877552 122222345566667777777666 4477777
Q ss_pred ccCcccCC
Q 036953 286 ELPLMSSL 293 (792)
Q Consensus 286 ~l~~l~gh 293 (792)
....++.+
T Consensus 647 NkslF~~v 654 (910)
T KOG1539|consen 647 NKSLFKSV 654 (910)
T ss_pred chhHheec
Confidence 66666544
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=135.21 Aligned_cols=199 Identities=17% Similarity=0.151 Sum_probs=142.0
Q ss_pred ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC-CCeEEEEe-ccCCCcCCCCCCeEEEEEcC-CCCEEEEEECCCe
Q 036953 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE-AESLRHLS-AKYCPLVPPPRSTIAAAFSP-DGRTLASTHGDHT 118 (792)
Q Consensus 42 k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~-d~sIrvWd-~~t~~L~gH~~~V~sLafSP-DG~~LaSGS~DGt 118 (792)
..++++-|.|+.+-.-. ...+..+.-.++|..+. +..++.-. ...++-..+..++++..|+. |.++|.+++-|.+
T Consensus 97 YP~tK~~wiPd~~g~~p--dlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYP--DLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred CCccceEecCCccccCc--chhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe
Confidence 46889999999641100 11111122334444432 11111111 11223345677899999998 8899999999999
Q ss_pred EEEEECCCCc---EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cc-CCCeeEEEEcCCC
Q 036953 119 VKIIDCQTGN---CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC---DF-YRPIASIAFHAEG 191 (792)
Q Consensus 119 VrIWDl~tgk---~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~---~h-~s~V~sVafSpdG 191 (792)
+.|||+.++. ....+-+|...|..++|....-+.+++++.||.||++|++..+.-..+ .. ..+...++|+++.
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999999863 355677899999999999856789999999999999999986544433 22 5678899999876
Q ss_pred -cEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 192 -ELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 192 -~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
+++|+-. ..+|.|.|++...... ..+..|...|+.++|.|.....++++++
T Consensus 255 pnymATf~~dS~~V~iLDiR~P~tpv--a~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 255 PNYMATFAMDSNKVVILDIRVPCTPV--ARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred chHHhhhhcCCceEEEEEecCCCcce--ehhhcCcccccceEecCCCCceeeecCC
Confidence 5666654 3449999999887542 4566799999999999999888888873
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-12 Score=135.84 Aligned_cols=182 Identities=23% Similarity=0.324 Sum_probs=139.6
Q ss_pred CcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEec---CCCCCc
Q 036953 69 KRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLS---GHRRTP 140 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~---gH~~~V 140 (792)
.-.++.++.-+.|++.|..+. .+.+|...|+.+.|.| +.++++++|.|..|++||+++..++..|- +|.+.|
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence 445666677889999998765 4678999999999999 56899999999999999999999998885 699999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcE------E-------------------EEe----ccCC-----------
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDANTSEC------I-------------------GSC----DFYR----------- 180 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~------v-------------------~t~----~h~s----------- 180 (792)
.++.|+. +++++++|+.|.++++|++...+. . ..| -|..
T Consensus 185 LSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ 263 (385)
T KOG1034|consen 185 LSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDF 263 (385)
T ss_pred EEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhh
Confidence 9999999 999999999999999999973210 0 000 0000
Q ss_pred -------------------------------------------C--eeEEEEcCCCcEEEEEc-CCeEEEEECCCCCccc
Q 036953 181 -------------------------------------------P--IASIAFHAEGELLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 181 -------------------------------------------~--V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
. ....+|++-++.||.+. .++|++||++..+...
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~ 343 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK 343 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc
Confidence 0 11234556677888888 4569999998877643
Q ss_pred CCeE-EecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 215 SPII-VLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 215 ~~~~-~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
.... .......|...+|+.|+..|++.+.+..++-|+
T Consensus 344 ~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 344 CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 2222 223467899999999999999998877666554
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-11 Score=133.41 Aligned_cols=181 Identities=15% Similarity=0.181 Sum_probs=147.0
Q ss_pred cEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCC-CCCcEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH-RRTPWVVR 144 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH-~~~VtsVa 144 (792)
..+++++..+++++||.+.. .+++|...|+++.++....+||+++..|.|.|..+.++.....|.-- ...|.-+.
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR 171 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence 46778889999999999844 57899999999999999999999999999999999998877777633 34567899
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--ccCCCeeEEEEcCCCcE-EEEEc-CCeEEEEECCCCCcccCCeEEe
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSC--DFYRPIASIAFHAEGEL-LAVAS-GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~--~h~s~V~sVafSpdG~~-LasgS-dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
|++....+|.+++.+|.|.+||+....++..+ .|..+...|+|+|.... |++.+ |.+|++||.+...... ..
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----~l 247 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----RL 247 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----ee
Confidence 99966777889999999999999998888777 48999999999998864 44445 6669999998766433 33
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe-----eCccccCCCce
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSSDSSM 254 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~d~~~ 254 (792)
....+...|+|.++|.+|+++.+ .||+|.....+
T Consensus 248 ~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 248 TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 44667899999999998888776 45555544443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-12 Score=131.46 Aligned_cols=193 Identities=17% Similarity=0.170 Sum_probs=140.9
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcC--CCCEEEEEECCCeEE
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSP--DGRTLASTHGDHTVK 120 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSP--DG~~LaSGS~DGtVr 120 (792)
.+.++.|.|++..+++- .+....+|+..+..++ +-.+....-.+|....++-+|+| |++.+++.+ |+++.
T Consensus 125 ~i~cvew~Pns~klasm------~dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~ 196 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASM------DDNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQ 196 (370)
T ss_pred ceeeEEEcCCCCeeEEe------ccCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEEEeC-CCcEE
Confidence 67899999988766554 2444445554444432 22222112234677788999999 899888755 78999
Q ss_pred EEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEe-ccCCCeeEEEEcCCC-cEEEE
Q 036953 121 IIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-SECIGSC-DFYRPIASIAFHAEG-ELLAV 196 (792)
Q Consensus 121 IWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~v~t~-~h~s~V~sVafSpdG-~~Las 196 (792)
.||+++.++...+. +|...|..+.|+|+...+|+||+.|+.|++||.+. ..++..+ +|..+++++.|+|.. ++|++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999988777765 68889999999997888999999999999999986 4577777 589999999999975 45566
Q ss_pred Ec-CCeEEEEECCCCC---------------------ccc-----CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 197 AS-GHKLYIWPYNNKE---------------------EAS-----SPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 197 gS-dd~V~IWDlrt~~---------------------~~~-----~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
++ |.+|.+|....-. ..+ .......|.+.|++++|+.-...++++-+
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 66 4558888664321 000 01133458899999999999998887774
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-11 Score=131.54 Aligned_cols=214 Identities=13% Similarity=0.143 Sum_probs=140.4
Q ss_pred EEEEEeCCCeEEEEeccCCCc------CCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 71 GLVSWVEAESLRHLSAKYCPL------VPPP-RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L------~gH~-~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
.+++.+..+-+..||+.+.++ .++. ..+....+++++++|+..+..|.|.|.-..+++.+..++ -.+.|..+
T Consensus 272 ~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 272 VIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred EEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 344444444555666554422 2232 245566666666666666666666666666666666665 46778999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCe--eEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccC--Ce-
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPI--ASIAFHAEGELLAVASGHK-LYIWPYNNKEEASS--PI- 217 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V--~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~--~~- 217 (792)
+|+. +++.|+.++.+|.|.+||++...++..+...+.| ++++.++++.+||+|++.+ |.|||.++...... |.
T Consensus 351 ~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 351 TFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 9998 8899999999999999999999999999665555 5677779999999999766 99999765432221 21
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceE
Q 036953 218 IVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLI 297 (792)
Q Consensus 218 ~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~V 297 (792)
.+..-...|+++.|++|.+.|+.++... ...-..+.+.....+.+||. .....+.|
T Consensus 430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~~~--knalrLVHvPS~TVFsNfP~----------------------~n~~vg~v 485 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDAQILAIASRVK--KNALRLVHVPSCTVFSNFPT----------------------SNTKVGHV 485 (514)
T ss_pred hhhhhheeeeeeeeCcchhhhhhhhhcc--ccceEEEeccceeeeccCCC----------------------CCCcccce
Confidence 2233467899999999999665544311 00001112222223333332 22356678
Q ss_pred EEeEECCCCcEEE
Q 036953 298 VPSVSIDDSRIDL 310 (792)
Q Consensus 298 wdV~~SpDGr~lv 310 (792)
.+++|||.|-+++
T Consensus 486 tc~aFSP~sG~lA 498 (514)
T KOG2055|consen 486 TCMAFSPNSGYLA 498 (514)
T ss_pred EEEEecCCCceEE
Confidence 8999999988887
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.8e-12 Score=135.51 Aligned_cols=172 Identities=25% Similarity=0.313 Sum_probs=134.8
Q ss_pred EEEEEeCCCeEEEEeccCC-------------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--------C---
Q 036953 71 GLVSWVEAESLRHLSAKYC-------------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ--------T--- 126 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~-------------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~--------t--- 126 (792)
++.++..|..|++|..... .|..|...|+++.|+|+|..|++|+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 6777788888888876432 367899999999999999999999999999999765 2
Q ss_pred -----CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCC
Q 036953 127 -----GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGH 200 (792)
Q Consensus 127 -----gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd 200 (792)
....+++.+|...|..++|+| ++.++++++.|+.+++||+..|+....+ +|...+..++|.|-++++++-+.+
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred hCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccC
Confidence 123456778999999999999 9999999999999999999999999888 599999999999999999987744
Q ss_pred e-EEEEECCCCCcccCC----------------eEEecCC----CCeEEEEEccCCCeEEEEEe
Q 036953 201 K-LYIWPYNNKEEASSP----------------IIVLKTR----RSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 201 ~-V~IWDlrt~~~~~~~----------------~~~~~h~----~sVtsVafSPdG~~LlaS~s 243 (792)
. .+.++++..+..... ...+.|. .-...++|+|+|..+++-++
T Consensus 187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 4 666665544322100 0111122 23467899999997776554
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-12 Score=142.28 Aligned_cols=166 Identities=17% Similarity=0.215 Sum_probs=131.8
Q ss_pred eCCCeEEEEeccCC-Cc-----C--CCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-------cEEEEecCCCCC
Q 036953 76 VEAESLRHLSAKYC-PL-----V--PPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG-------NCLKVLSGHRRT 139 (792)
Q Consensus 76 s~d~sIrvWd~~t~-~L-----~--gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg-------k~v~~L~gH~~~ 139 (792)
+..+.|-+++...- +| . -....|+.++|+| |..+|++++.||.|+||.+..+ .....+.+|...
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 45788888887632 22 1 2345699999999 9999999999999999998654 345778899999
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCe
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPI 217 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~ 217 (792)
|+.++|||.-.+.|++++.|.+|++||+++++.-..+ +|.+.|.+++|+|+|+.+++.+ |++|++|+-++.+...
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv--- 756 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV--- 756 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc---
Confidence 9999999988889999999999999999998766665 6999999999999999999988 6679999998876432
Q ss_pred EEec--CCCCeEEEEEccCCCeEEEEEee
Q 036953 218 IVLK--TRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 218 ~~~~--h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
.... -...--.+.|.-+|+++++++-+
T Consensus 757 ~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 757 YEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred ccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 1111 11223467788899988877743
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=138.74 Aligned_cols=242 Identities=16% Similarity=0.229 Sum_probs=178.3
Q ss_pred CcEEEEEeCCCeEEEEeccCCC-----------------------------------------cCCCCCCeEEEEEcCCC
Q 036953 69 KRGLVSWVEAESLRHLSAKYCP-----------------------------------------LVPPPRSTIAAAFSPDG 107 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~-----------------------------------------L~gH~~~V~sLafSPDG 107 (792)
...+.+++.|++||+|+...+. +-+..-++.+++.+|+|
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 4458899999999999985320 01234568999999999
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEcc--CCCCEEEEEeCCCeEEEEECCCC-cEEEEe-ccCCCee
Q 036953 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP--LRSEILASGSLDHEVRLWDANTS-ECIGSC-DFYRPIA 183 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP--~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~-~h~s~V~ 183 (792)
++|++|..-|+++|||+..-+.+..+.+|...|.|+.|+. ...++|++++.|.-|++||+... .++.++ +|.+.|+
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 9999999999999999999888888999999999999985 23578999999999999999764 455566 5899999
Q ss_pred EEEEcCCC--cEEEEEcCCeEEEEECCCCCcccCC---eEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC-----c
Q 036953 184 SIAFHAEG--ELLAVASGHKLYIWPYNNKEEASSP---IIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS-----S 253 (792)
Q Consensus 184 sVafSpdG--~~LasgSdd~V~IWDlrt~~~~~~~---~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~-----~ 253 (792)
++.|--.| ..+++++.++..+|+.......... ....-....++.++..|+.+++++.|.+.+|+..+. .
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 99998877 6777888777666766542211100 011113567999999999999999999888775442 2
Q ss_pred eeeecCCCc------ccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEE
Q 036953 254 MTRATSPGY------LRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 254 ~~l~t~sg~------~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
...+...++ ....|..++++..-+++.+.+.. ....+-||.-.|.-+.|++|=+.|+
T Consensus 632 k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlI 699 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLI 699 (1080)
T ss_pred eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhhe
Confidence 233333322 22344556666655666655554 2235668999999999999999888
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=135.50 Aligned_cols=197 Identities=15% Similarity=0.196 Sum_probs=151.9
Q ss_pred CCCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cC-
Q 036953 21 LRRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LV- 92 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~- 92 (792)
-..+.++||++..+.... -+...|+.+.+.-. +..|.+++.++.|.+....+++ +.
T Consensus 98 G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~----------------DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT----------------DEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred CcCceeeehhhHHHHHhhhccCCcceeEEEEecCC----------------cceeEEeccCCcEEEEecccCccccceec
Confidence 367789999998664443 23334555544333 3455566666777777666552 22
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEEEe-cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 93 PPPRSTIAAAFSPDGR-TLASTHGDHTVKIIDCQTGNCLKVL-SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 93 gH~~~V~sLafSPDG~-~LaSGS~DGtVrIWDl~tgk~v~~L-~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+....|.-+.|++..+ +|.+++.+|.|.+||+....++..+ +.|..+..+|+|+|.+..+|++.+.|+.|.+||.+..
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 2245577899999655 5567889999999999877665544 4799999999999988899999999999999999998
Q ss_pred cEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC
Q 036953 171 ECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 171 ~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG 235 (792)
+....+....+...++|.++|.+|+.|. .++|..||++..+... .....|...|++|+|-|.-
T Consensus 242 ~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv--~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 242 ASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV--AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCc--eEeeecccceeEEEeeecc
Confidence 8888888899999999999999999998 5669999999887542 4556688889999998865
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-11 Score=135.79 Aligned_cols=255 Identities=14% Similarity=0.100 Sum_probs=179.3
Q ss_pred EEEEEeCCCeEEEEeccC-----------CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---cEEEEecCC
Q 036953 71 GLVSWVEAESLRHLSAKY-----------CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG---NCLKVLSGH 136 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t-----------~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg---k~v~~L~gH 136 (792)
.|.+.+.|+++.+|.... +.+.+...+.+...|+|+++.+++-+..|-.++|..... .....+.||
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH 360 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH 360 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence 445555666666665543 344556677999999999999999999999999983322 234456799
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEEe----ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCC
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE-CIGSC----DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNK 210 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~v~t~----~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~ 210 (792)
.+.|++++|+| .+.+|++.+.|.|-|++-....+ .-..+ -|...++|++|-+....|++|.+.+ +++|+..+.
T Consensus 361 ~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~ 439 (764)
T KOG1063|consen 361 VDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKS 439 (764)
T ss_pred cccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHH
Confidence 99999999999 99999999999999998765222 22222 2777889999988666677777766 888865321
Q ss_pred C-------------------------------------------c------------------------------ccCCe
Q 036953 211 E-------------------------------------------E------------------------------ASSPI 217 (792)
Q Consensus 211 ~-------------------------------------------~------------------------------~~~~~ 217 (792)
- . ..+..
T Consensus 440 fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~ 519 (764)
T KOG1063|consen 440 FVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVH 519 (764)
T ss_pred HHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhH
Confidence 0 0 00011
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEe----------eCccccCCCceeeecCCC---cccCCCCceEEEEecCCCEEEEe
Q 036953 218 IVLKTRRSLRAVHFHPHAAPFVLTAE----------VNDLDSSDSSMTRATSPG---YLRYPPPAVFVANAQSGDHVSLA 284 (792)
Q Consensus 218 ~~~~h~~sVtsVafSPdG~~LlaS~s----------~~dLrs~d~~~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~ 284 (792)
.+.+|...|++++.+|+++.++++|. +|+...|.....+...+- .+.|.+...++...+.+....+.
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence 13357788999999999997777776 555555544433333222 45666666666666666554544
Q ss_pred e---------ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 285 A---------ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 285 s---------~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
. .....+.|..-||+++++||+++++ |+|.|++|--|....+
T Consensus 600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~Fa--------------------------TaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFA--------------------------TASRDKKVKVWEEPDL 650 (764)
T ss_pred eeecccchhhhhccccccceEEEEcccCcccceeE--------------------------EecCCceEEEEeccCc
Confidence 4 1223678999999999999999999 9999999999986544
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-12 Score=137.04 Aligned_cols=205 Identities=16% Similarity=0.154 Sum_probs=155.5
Q ss_pred CCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC----cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEE
Q 036953 92 VPPPRSTIAAAFSPD--GRTLASTHGDHTVKIIDCQTG----NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLW 165 (792)
Q Consensus 92 ~gH~~~V~sLafSPD--G~~LaSGS~DGtVrIWDl~tg----k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLW 165 (792)
.-+.+.|++++|+|. -+.+++|+.-|+|-+||+.+. .-+..+..|..+|.++.|+|.+...+++.+.||+|++-
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 457888999999993 368899999999999999533 24677889999999999999888999999999999999
Q ss_pred ECCCCcEEEEec---cCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 166 DANTSECIGSCD---FYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 166 Dl~tg~~v~t~~---h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
|+++...-..+. ....+.++.|+.+...++.+.+ +.+.+||+++.+... ....-|...|+.|+++|...+++++
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~--~~~~lh~kKI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY--ENLRLHKKKITSVALNPVCPWFLAT 340 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc--hhhhhhhcccceeecCCCCchheee
Confidence 999864333332 3456788899888877777764 359999999987643 2234466799999999999999998
Q ss_pred EeeC-ccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCC
Q 036953 242 AEVN-DLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSS 320 (792)
Q Consensus 242 ~s~~-dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg 320 (792)
++.+ ..+.||.+......+ + .++.. .|.-.|-+++|||+|--|+
T Consensus 341 ~s~D~T~kIWD~R~l~~K~s-------p-----------~lst~-------~HrrsV~sAyFSPs~gtl~---------- 385 (498)
T KOG4328|consen 341 ASLDQTAKIWDLRQLRGKAS-------P-----------FLSTL-------PHRRSVNSAYFSPSGGTLL---------- 385 (498)
T ss_pred cccCcceeeeehhhhcCCCC-------c-----------ceecc-------cccceeeeeEEcCCCCceE----------
Confidence 8844 333555442221100 0 11111 2888999999999976688
Q ss_pred CccccccccccccCCCCCccccccccccc
Q 036953 321 NMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 321 ~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
+-.+|.+|.-||.
T Consensus 386 ----------------TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 386 ----------------TTCQDNEIRVFDS 398 (498)
T ss_pred ----------------eeccCCceEEeec
Confidence 7889999999998
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.4e-11 Score=125.88 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=123.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
..+.|..+.|+|..+.|+.++.||.+++||+........|+ |..++.+++|.+ ...+++|+.|+.|+.+|+++++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC--CceEEEeccCceEEEEEecCCcce
Confidence 46789999999999999999999999999998886666665 999999999985 678999999999999999999888
Q ss_pred EEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCcc
Q 036953 174 GSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-----VNDL 247 (792)
Q Consensus 174 ~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-----~~dL 247 (792)
..-.|..++.++.+.+....+++|+ |.+|++||.+..... ........|+++... |+.|++++. .||+
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~----~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV----GTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc----cccccCceEEEEecc--CCEEEEeecCceEEEEEc
Confidence 7778999999999998888888888 778999999874422 233344588888765 677887666 6666
Q ss_pred ccCCC
Q 036953 248 DSSDS 252 (792)
Q Consensus 248 rs~d~ 252 (792)
+.-+.
T Consensus 163 Rn~~~ 167 (323)
T KOG1036|consen 163 RNLDE 167 (323)
T ss_pred ccccc
Confidence 64443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=128.69 Aligned_cols=140 Identities=27% Similarity=0.433 Sum_probs=118.7
Q ss_pred cEEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcCCC----CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDG----RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSPDG----~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf 145 (792)
..++.+..|+-+++...... ..|....+.++|+-|. .+++.|+.-|.|+|.|+.++++...+.+|...|..+.|
T Consensus 66 vtiy~c~~d~~ir~lq~y~D--~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~ 143 (385)
T KOG1034|consen 66 VTIYECPGDGGIRLLQSYAD--EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKF 143 (385)
T ss_pred EEEEEECCccceeeeeeccC--CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhc
Confidence 34566666665555543322 2578888999998743 37888889999999999999999999999999999999
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCC
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSC----DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKE 211 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~----~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~ 211 (792)
+|.+.+++++++.|..||+||+++..|+..| +|.+.|.+++|+.+|.+|++++ |..|++|+++..+
T Consensus 144 ~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 144 HPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred CCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 9988899999999999999999999999998 3888999999999999999998 6669999998543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-10 Score=132.27 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=135.2
Q ss_pred EEEEEeCCCeEEEEeccCC-----CcCCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYC-----PLVPP-PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~-----~L~gH-~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
.|...-.++.|.+|+...+ .+.++ .+.|.+++|+ ++.+|.+.+.+|.|.-||+.+++....+..-.+.|++++
T Consensus 39 ~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsia 117 (691)
T KOG2048|consen 39 QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIA 117 (691)
T ss_pred ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEE
Confidence 3566678899999998754 23444 4569999999 677889999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEe
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSC---DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~---~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~ 220 (792)
.+| .++.++.|++||.+..++...++..... ..++.+-+++|++++..|+.|+.|+ |++||..++..........
T Consensus 118 i~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~ 196 (691)
T KOG2048|consen 118 INP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQL 196 (691)
T ss_pred eCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecc
Confidence 999 8899999999998888888887765543 3568999999999999999999655 9999999887543111111
Q ss_pred c-----CCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 221 K-----TRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 221 ~-----h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
. ...-|.+|.|-.++. |+++.+-..+..|
T Consensus 197 d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FW 230 (691)
T KOG2048|consen 197 DRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFW 230 (691)
T ss_pred cccccCCceEEEEEEEeecCc-EEEecCCceEEEE
Confidence 1 122477888876665 4444433333333
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-11 Score=132.84 Aligned_cols=179 Identities=15% Similarity=0.161 Sum_probs=138.1
Q ss_pred ecCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCc
Q 036953 66 RDAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP 140 (792)
Q Consensus 66 ~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V 140 (792)
+.....|++++.|+++++||+.+++ +.-|.+.|.++.|+| ....|++|+.|++|.|.|++...+....-.-.+.|
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V 332 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV 332 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccce
Confidence 4567789999999999999999873 556899999999999 78899999999999999998432221111234678
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEec-cCCCeeEEEEcCCCc-EEEEEcCCe-EEEEECCCCCcccCC
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSCD-FYRPIASIAFHAEGE-LLAVASGHK-LYIWPYNNKEEASSP 216 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~~-h~s~V~sVafSpdG~-~LasgSdd~-V~IWDlrt~~~~~~~ 216 (792)
-.+.|+|+....++++..||+|+-+|+|+. ++++++. |.+.|.+++++..-. ++++++.++ |++|++.........
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 889999988888999999999999999984 8999885 999999999998764 667777555 999999655432100
Q ss_pred eEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 217 IIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 217 ~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
...+ .-+...|.++.|+-.++++.++..
T Consensus 413 ~~~~-~~~rl~c~~~~~~~a~~la~GG~k 440 (463)
T KOG0270|consen 413 EHSF-KLGRLHCFALDPDVAFTLAFGGEK 440 (463)
T ss_pred cccc-cccceeecccCCCcceEEEecCcc
Confidence 1111 123377888899888888777644
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-11 Score=125.71 Aligned_cols=147 Identities=15% Similarity=0.256 Sum_probs=116.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE-EEEec-----CCCCCcEEEEEcc-CCCCEEEEEeCCCeEEEE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC-LKVLS-----GHRRTPWVVRFHP-LRSEILASGSLDHEVRLW 165 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~-v~~L~-----gH~~~VtsVafSP-~dg~lLaSgS~DgtVrLW 165 (792)
.+-+.|.|+.|.|++.++++-. |..|.+|++..+.. +..+. +|....++-+|+| ++++.+++ ..|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEE
Confidence 3455899999999999999876 77899999987765 33332 3566778899999 55666665 469999999
Q ss_pred ECCCCcEEEEec--cCCCeeEEEEcCCCc-EEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 166 DANTSECIGSCD--FYRPIASIAFHAEGE-LLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 166 Dl~tg~~v~t~~--h~s~V~sVafSpdG~-~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
|+++.++...+. |...+..+.|+|+.+ +|++++|++ |+|||.++.+... ....+|.-+|.+|.|+|.-+.|+.+
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv--~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV--QELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc--cccCCCceEEEEEEecCccceEEEe
Confidence 999988877774 888899999999876 566777555 9999999887542 4456789999999999988777777
Q ss_pred Ee
Q 036953 242 AE 243 (792)
Q Consensus 242 ~s 243 (792)
++
T Consensus 277 ~~ 278 (370)
T KOG1007|consen 277 GG 278 (370)
T ss_pred cC
Confidence 65
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=134.03 Aligned_cols=147 Identities=24% Similarity=0.377 Sum_probs=119.9
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCc---------EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 036953 95 PRSTIAAAFSPDGR-TLASTHGDHTVKIIDCQTGN---------CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRL 164 (792)
Q Consensus 95 ~~~V~sLafSPDG~-~LaSGS~DGtVrIWDl~tgk---------~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrL 164 (792)
..+|.++.|.++.. +|++|+.|..|+||-++.+. ....+..|...|+++.|+| ++++|+||+.+++|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 35699999998655 99999999999999876432 2345678999999999999 9999999999999999
Q ss_pred EECC--------C-----Cc-E-E-EEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 165 WDAN--------T-----SE-C-I-GSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 165 WDl~--------t-----g~-~-v-~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
|... + .+ . + +.+ .|...|..++|++++.++++++ ++.+++||+..+.... ....|..-+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---~~~dh~~yv 168 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---ILDDHEHYV 168 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe---ecccccccc
Confidence 9776 2 11 1 1 112 4778899999999999999999 6669999999998543 566788999
Q ss_pred EEEEEccCCCeEEEEEeeC
Q 036953 227 RAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~ 245 (792)
..++|.|-+++++.-+.+.
T Consensus 169 qgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ceeecchhhhhhhhhccCc
Confidence 9999999999887655544
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-10 Score=124.66 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=125.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE 171 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~ 171 (792)
.+|.+....++..|+.+.+++++.|+.++||+ ..+.+.... -..++.++.|+| .+ .++.|+..|...+.|.++..
T Consensus 365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccce
Confidence 46888889999999999999999999999999 455555544 456789999999 66 99999999999999999977
Q ss_pred EEEEeccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 172 CIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 172 ~v~t~~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
.+.....+.+++.+.|+|+|.+||+++. +.|+||-+........... .-+..+|+.++|++|++++..-+.+++|--|
T Consensus 440 lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 440 LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-KCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-eecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 6666555899999999999999999994 5599999977664431221 2234899999999999998887777776554
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.8e-11 Score=123.85 Aligned_cols=234 Identities=12% Similarity=0.164 Sum_probs=160.5
Q ss_pred CccCCCCCCC--CCCCCCCCCCCCCceEeeecccc-eeeCCCCceeeeEEeeCCCceEeecCCCceeec--CCcEEEEEe
Q 036953 2 TGLSWPHDQN--SLRSQPSNHLRRRARNVSRLLAH-REISPKTKYVPKRQWVDASKLKTCGPSDSSVRD--AKRGLVSWV 76 (792)
Q Consensus 2 ~~~~w~~~~~--~~~~~~~~s~~s~~r~V~~l~~~-rels~~tk~V~s~aWspd~~lla~G~~a~sv~d--~~~~L~S~s 76 (792)
|..-|++++. .|..+.+ .+.+.++|+.... ..+... ...+.+.+.-.|+...++-|+ .-..+.+.+
T Consensus 100 tK~~wiPd~~g~~pdlLAT---s~D~LRlWri~~ee~~~~~~------~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLAT---SSDFLRLWRIGDEESRVELQ------SVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred cceEecCCccccCcchhhc---ccCeEEEEeccCcCCceehh------hhhccCcccccCCcccccccccCCcceeEeec
Confidence 3455777765 4433433 4667888877642 112111 111111121223333333333 245567777
Q ss_pred CCCeEEEEeccCC-------CcCCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEec---CCCCCcEEEEE
Q 036953 77 EAESLRHLSAKYC-------PLVPPPRSTIAAAFSPDG-RTLASTHGDHTVKIIDCQTGNCLKVLS---GHRRTPWVVRF 145 (792)
Q Consensus 77 ~d~sIrvWd~~t~-------~L~gH~~~V~sLafSPDG-~~LaSGS~DGtVrIWDl~tgk~v~~L~---gH~~~VtsVaf 145 (792)
-|.+-.+|+++++ +|..|.+.|+.++|...+ +.|++.+.||.|++||++..+....+. ....+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 8889999998764 578999999999999844 578999999999999998766443333 22457788999
Q ss_pred ccCCCCEEEEEeCC-CeEEEEECCC-CcEEEEe-ccCCCeeEEEEcCCC-cEEEEEcCCe-EEEEECCCCCc--ccCCeE
Q 036953 146 HPLRSEILASGSLD-HEVRLWDANT-SECIGSC-DFYRPIASIAFHAEG-ELLAVASGHK-LYIWPYNNKEE--ASSPII 218 (792)
Q Consensus 146 SP~dg~lLaSgS~D-gtVrLWDl~t-g~~v~t~-~h~s~V~sVafSpdG-~~LasgSdd~-V~IWDlrt~~~--~~~~~~ 218 (792)
+++|.++++|-..| ..|.+.|++. ..++..+ .|.+.|+.++|.|.. ..|++++|+. +.|||+...-. ...|..
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 99999999998766 5699999997 4567776 599999999999976 6888888777 99999976543 222344
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEee
Q 036953 219 VLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 219 ~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
.......|+.+.|++....-++.+..
T Consensus 331 ay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 331 AYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhhccceeeeeeecccCCCEEEEEec
Confidence 44467789999999766555555543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=132.23 Aligned_cols=175 Identities=14% Similarity=0.202 Sum_probs=122.0
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCC------cCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc-----------
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCP------LVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN----------- 128 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~------L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk----------- 128 (792)
.++-.|++.+-|.+++.||+++.. +.||...|.+++|.| |...|++|+.||.|.|||+.-..
T Consensus 110 pge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~ 189 (720)
T KOG0321|consen 110 PGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI 189 (720)
T ss_pred CCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence 356688999999999999998663 578999999999999 67789999999999999986321
Q ss_pred ----------------EEEEecCCCCCcEE---EEEccCCCCEEEEEeC-CCeEEEEECCCCcEEEEe------c---c-
Q 036953 129 ----------------CLKVLSGHRRTPWV---VRFHPLRSEILASGSL-DHEVRLWDANTSECIGSC------D---F- 178 (792)
Q Consensus 129 ----------------~v~~L~gH~~~Vts---VafSP~dg~lLaSgS~-DgtVrLWDl~tg~~v~t~------~---h- 178 (792)
.+..-+.|...|.+ +.+.. |...|++++. |+.||+||+++.+..... . +
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s 268 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS 268 (720)
T ss_pred hccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc
Confidence 01111234445554 44444 7889999987 999999999976443322 1 2
Q ss_pred --CCCeeEEEEcCCCcEEEEE-cCCeEEEEECCCCCcccCCeEEecC-CCC-eEEEEEccCCCeEEEEEe
Q 036953 179 --YRPIASIAFHAEGELLAVA-SGHKLYIWPYNNKEEASSPIIVLKT-RRS-LRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 179 --~s~V~sVafSpdG~~Lasg-Sdd~V~IWDlrt~~~~~~~~~~~~h-~~s-VtsVafSPdG~~LlaS~s 243 (792)
.-.+.++..+..|.+|++. .|+.|++||+.+..... ...+.++ ... -..-..+||+.+++.+..
T Consensus 269 krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP-~~~~sg~~~~sf~vks~lSpd~~~l~SgSs 337 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP-VAEFSGKLNSSFYVKSELSPDDCSLLSGSS 337 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc-hhhccCcccceeeeeeecCCCCceEeccCC
Confidence 2346778888888766554 57779999998776432 1111121 111 123357899998887666
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-11 Score=127.10 Aligned_cols=203 Identities=14% Similarity=0.182 Sum_probs=146.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-CC
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG---NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN-TS 170 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg---k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~-tg 170 (792)
..+|+|.+|++|+..+|.+-..+.|.||..... +..++++.|...|++++|+| ..+.|++|+.|..-++|... .+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCC
Confidence 567999999999999999999999999987654 46788999999999999999 88999999999999999984 44
Q ss_pred cE---EEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccC-CeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 171 EC---IGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASS-PIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 171 ~~---v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~-~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+- +..+.++..++++.|+|.++.|++++..+ |.||-+........ .......+++|++++|||++-.+++++.|.
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 32 23347899999999999999999999766 89998877664321 122344678999999999998666666566
Q ss_pred ccccCCCce-eeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 246 DLDSSDSSM-TRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 246 dLrs~d~~~-~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
..+.....+ .+........| |..+-+..-..-.....++|-.+.|+|+|..|+
T Consensus 169 k~rVfSayIK~Vdekpap~pW------------gsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPW------------GSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred ceeEEEEeeeccccCCCCCCC------------ccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 555322221 11111111111 111111110001113578999999999999887
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=148.15 Aligned_cols=237 Identities=21% Similarity=0.258 Sum_probs=154.9
Q ss_pred eeeeEEeeCCCc-eEeecCCCceeecCCcEEEEEeCCCeEEEEecc--CCC----c---CCCCCCeEEEEEcCCCCE---
Q 036953 43 YVPKRQWVDASK-LKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAK--YCP----L---VPPPRSTIAAAFSPDGRT--- 109 (792)
Q Consensus 43 ~V~s~aWspd~~-lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~--t~~----L---~gH~~~V~sLafSPDG~~--- 109 (792)
+....+|+|.+. +++.|..+... |. +.+.+.++.+|... ... . ..-....+.++|.+.+..
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~-D~-----sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~G 81 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQF-DA-----SFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHG 81 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhcc-cc-----ccccccccceeeecccCccccccccccccccccceeeeecccCCCccc
Confidence 557889999986 46666543333 11 11334444444432 111 1 112345789999997765
Q ss_pred -EEEEECCCeEEEEECCC---C---cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---ccC
Q 036953 110 -LASTHGDHTVKIIDCQT---G---NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC---DFY 179 (792)
Q Consensus 110 -LaSGS~DGtVrIWDl~t---g---k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~---~h~ 179 (792)
|+.|..||.|.+||... + ..+..+..|.+.|.++.|++..+++|++|+.||+|.|||+++-+.-..+ ...
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~ 161 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP 161 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence 88888999999999865 2 2355667899999999999977789999999999999999985433333 245
Q ss_pred CCeeEEEEcCCC-cEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeee
Q 036953 180 RPIASIAFHAEG-ELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRA 257 (792)
Q Consensus 180 s~V~sVafSpdG-~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~ 257 (792)
+.|.+++|+..- ..|++++. +++.|||++..+.+. .......+..+..+.|||+...-++.+...|-
T Consensus 162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii-~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~---------- 230 (1049)
T KOG0307|consen 162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII-KLSDTPGRMHCSVLAWHPDHATQLLVASGDDS---------- 230 (1049)
T ss_pred ccceEeccchhhhHHhhccCCCCCceeccccCCCccc-ccccCCCccceeeeeeCCCCceeeeeecCCCC----------
Confidence 779999999765 56777774 469999999886542 11222234568899999998776665543210
Q ss_pred cCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC-cEEE
Q 036953 258 TSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS-RIDL 310 (792)
Q Consensus 258 t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG-r~lv 310 (792)
.+.+.+|+. |...+.+.++.+|..-|..+.+.+.+ ++++
T Consensus 231 ---------~PviqlWDl-----R~assP~k~~~~H~~GilslsWc~~D~~lll 270 (1049)
T KOG0307|consen 231 ---------APVIQLWDL-----RFASSPLKILEGHQRGILSLSWCPQDPRLLL 270 (1049)
T ss_pred ---------CceeEeecc-----cccCCchhhhcccccceeeeccCCCCchhhh
Confidence 122333331 11222334445577777777777665 5555
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-11 Score=134.20 Aligned_cols=219 Identities=17% Similarity=0.160 Sum_probs=147.0
Q ss_pred CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEcc-CCCCEEEEEeCCCeEEEEE
Q 036953 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHP-LRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP-~dg~lLaSgS~DgtVrLWD 166 (792)
..|.||.+.|+|+.|+.||.+|++|+.|-.+.|||.-..|.++.+. ||...|.++.|-| .+..+++||..|+.|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 3588999999999999999999999999999999998888887775 8999999999998 4667899999999999999
Q ss_pred CCCC----------cEEEEe-ccCCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCcccC----C---eEEecCCCCe
Q 036953 167 ANTS----------ECIGSC-DFYRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASS----P---IIVLKTRRSL 226 (792)
Q Consensus 167 l~tg----------~~v~t~-~h~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~----~---~~~~~h~~sV 226 (792)
+... +.+..+ .|...|..++-.|++ ..|.+++ |+.|+-+|++....-.. + .......-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9841 222333 377889999999999 6788888 55599999987542110 0 0111122456
Q ss_pred EEEEEccCCCeEEEEEe-eCccccCCCceeeecCC--CcccCCCCc-eEEEE-ecCCCEEEEeeccCcccCCCceEEEeE
Q 036953 227 RAVHFHPHAAPFVLTAE-VNDLDSSDSSMTRATSP--GYLRYPPPA-VFVAN-AQSGDHVSLAAELPLMSSLPFLIVPSV 301 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s-~~dLrs~d~~~~l~t~s--g~~~~p~~~-~~l~~-~ssG~~~~l~s~l~~l~gh~~~VwdV~ 301 (792)
.++..+|...++++.++ +--.+..|.+..++... +..+.+++. ..++. ...|+. +...+ ...-......-+.
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl-kn~~g--n~~~~~~~~t~vt 280 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL-KNSQG--NLDRYITCCTYVT 280 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc-cCccc--ccccceeeeEEEE
Confidence 78999998887776665 33344445343333222 222333321 11111 111111 11111 1111233456788
Q ss_pred ECCCCcEEE
Q 036953 302 SIDDSRIDL 310 (792)
Q Consensus 302 ~SpDGr~lv 310 (792)
|+|+|.+++
T Consensus 281 fnpNGtElL 289 (758)
T KOG1310|consen 281 FNPNGTELL 289 (758)
T ss_pred ECCCCcEEE
Confidence 999999887
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-10 Score=129.08 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=108.4
Q ss_pred CeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCcE--EEEecCCCCCcEEEEEccCCC
Q 036953 79 ESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGD---HTVKIIDCQTGNC--LKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 79 ~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~D---GtVrIWDl~tgk~--v~~L~gH~~~VtsVafSP~dg 150 (792)
..|.+||.... .+..|...+...+|||||++|+..+.+ ..|++||+.+++. +..+.+| ...++|+| |+
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-DG 259 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-DG 259 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-CC
Confidence 57888887543 356778889999999999999988754 4699999988764 3333343 34689999 88
Q ss_pred CEEEEEe-CCCeEEE--EECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--CeEEEEECCCCCcccCCeEEecCCCC
Q 036953 151 EILASGS-LDHEVRL--WDANTSECIGSCDFYRPIASIAFHAEGELLAVASG--HKLYIWPYNNKEEASSPIIVLKTRRS 225 (792)
Q Consensus 151 ~lLaSgS-~DgtVrL--WDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d~V~IWDlrt~~~~~~~~~~~~h~~s 225 (792)
+.|+.++ .++.+.| ||+.+++......+...+....|+|||+.|+..++ +..+||+++...... ....+..
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~~~- 335 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA---SLVGGRG- 335 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEecCCC-
Confidence 8777654 6776555 57777765554456667788999999998877663 447777664432211 1122322
Q ss_pred eEEEEEccCCCeEEEEEe
Q 036953 226 LRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 226 VtsVafSPdG~~LlaS~s 243 (792)
..+.|+|||+.+++++.
T Consensus 336 -~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 336 -YSAQISADGKTLVMING 352 (429)
T ss_pred -CCccCCCCCCEEEEEcC
Confidence 45789999998877653
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-11 Score=136.97 Aligned_cols=188 Identities=20% Similarity=0.316 Sum_probs=136.0
Q ss_pred eeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC----CCcCCCCCCeEEEEEcCCCCEEE
Q 036953 36 EISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY----CPLVPPPRSTIAAAFSPDGRTLA 111 (792)
Q Consensus 36 els~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t----~~L~gH~~~V~sLafSPDG~~La 111 (792)
++..+...+.+++-+|+++++++....... +--.|++|+... ..+.+|.-.|+.++|||||++|+
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~-----------ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LL 588 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLK-----------EHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLL 588 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCc-----------cceEEEEEeccchhhhheecccceEEEEEEECCCCcEEE
Confidence 344566677777778887777665433322 123466776542 25889999999999999999999
Q ss_pred EEECCCeEEEEECCCCc----EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC--cEEEE---eccCCCe
Q 036953 112 STHGDHTVKIIDCQTGN----CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS--ECIGS---CDFYRPI 182 (792)
Q Consensus 112 SGS~DGtVrIWDl~tgk----~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg--~~v~t---~~h~s~V 182 (792)
+.+.|.++.+|...... .....+.|++.|+++.|+| ++.+++|+|.|++|++|..... +.+.. +.+...|
T Consensus 589 svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aV 667 (764)
T KOG1063|consen 589 SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAV 667 (764)
T ss_pred EeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCce
Confidence 99999999999875332 2234678999999999999 9999999999999999998877 44433 3688899
Q ss_pred eEEEEcCC-----CcEEEEEc-CCeEEEEECCCCCcccC---------CeEEecCCCCeEEEEEccCC
Q 036953 183 ASIAFHAE-----GELLAVAS-GHKLYIWPYNNKEEASS---------PIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 183 ~sVafSpd-----G~~LasgS-dd~V~IWDlrt~~~~~~---------~~~~~~h~~sVtsVafSPdG 235 (792)
+.++|.+- +..+++|- .+.|.+|.........+ ......+...|+.+.|.|..
T Consensus 668 TAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~ 735 (764)
T KOG1063|consen 668 TAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTC 735 (764)
T ss_pred eeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccc
Confidence 99999763 23566666 56699999763321110 01122356788999999863
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-11 Score=135.85 Aligned_cols=174 Identities=16% Similarity=0.192 Sum_probs=132.3
Q ss_pred CcEEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCC
Q 036953 69 KRGLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGH 136 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH 136 (792)
..+|..+.+|+.|++|.+..+ .+..|.+.|+++.|+| ....|++++.|-+|+|||+.+++....|.+|
T Consensus 640 ~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH 719 (1012)
T KOG1445|consen 640 DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH 719 (1012)
T ss_pred hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC
Confidence 456788889999999988643 3678999999999999 6778999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEEec--cCCCeeEEEEcCCCcEEEEEc-C----CeEEEEECC
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE-CIGSCD--FYRPIASIAFHAEGELLAVAS-G----HKLYIWPYN 208 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~v~t~~--h~s~V~sVafSpdG~~LasgS-d----d~V~IWDlr 208 (792)
.+.|.+++|+| +++.+++.+.|++|++|+.+.++ ++..-. ....-..|.|--||+++++.+ + ..|.+||..
T Consensus 720 tdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 720 TDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred cCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 99999999999 99999999999999999998764 333321 223445788888999888776 2 228899887
Q ss_pred CCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 209 NKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 209 t~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+-...........-.-.+.--.+.+|...++++++
T Consensus 799 ~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK 833 (1012)
T KOG1445|consen 799 TLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK 833 (1012)
T ss_pred hccCCcceeeeecccCccccccccCCCceEEEecC
Confidence 66532211222222222333446667776776665
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-09 Score=123.13 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=115.8
Q ss_pred eEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.++|.... ++..|...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+...+|+| |++.|
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP-DG~~l 260 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP-DGRKV 260 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC-CCCEE
Confidence 5667776533 35677888999999999999988764 468999999888653 4555677788899999 77665
Q ss_pred -EEEeCCCe--EEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCC----eEEEEECCCCCcccCCeEEecCCCCe
Q 036953 154 -ASGSLDHE--VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGH----KLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 154 -aSgS~Dgt--VrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd----~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
++.+.++. |.+||+.+++......+........|+|||+.|+..++. .|++||+..++.. .+..+...+
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~~~~~ 336 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----RISFGGGRY 336 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE----EeecCCCcc
Confidence 46666655 777799888765544555566789999999988877632 3899998765432 223334556
Q ss_pred EEEEEccCCCeEEEEE
Q 036953 227 RAVHFHPHAAPFVLTA 242 (792)
Q Consensus 227 tsVafSPdG~~LlaS~ 242 (792)
....|+|||+.++.+.
T Consensus 337 ~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 337 STPVWSPRGDLIAFTK 352 (435)
T ss_pred cCeEECCCCCEEEEEE
Confidence 7789999999888765
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8e-11 Score=129.71 Aligned_cols=211 Identities=18% Similarity=0.192 Sum_probs=152.4
Q ss_pred CCCCCCceEeeecccceeeCCCC------ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcC
Q 036953 19 NHLRRRARNVSRLLAHREISPKT------KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLV 92 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels~~t------k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~ 92 (792)
.+..+++.++|++.+.+...... +.+....-++++ ..|+..+..+-|.+...+++.+.
T Consensus 275 ~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~----------------~fia~~G~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS----------------NFIAIAGNNGHIHLLHAKTKELI 338 (514)
T ss_pred ecccceEEEEeeccccccccccCCCCcccchhheeEecCCC----------------CeEEEcccCceEEeehhhhhhhh
Confidence 55678899999998776555221 112222223333 34455556667777777766543
Q ss_pred C---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCc--EEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 93 P---PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP--WVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 93 g---H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V--tsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
. -.+.|..++|+.|++.|+.++.+|.|.+||++...+++.+.. .+.| +.+|.++ ++.+||+|+..|.|.|||.
T Consensus 339 ~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 339 TSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISL-NGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred heeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecC-CCceEEeccCcceEEEecc
Confidence 2 356799999999999999999999999999999999999873 3344 4466677 8899999999999999997
Q ss_pred CC------CcEEEEec-cCCCeeEEEEcCCCcEEEEEcC---CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe
Q 036953 168 NT------SECIGSCD-FYRPIASIAFHAEGELLAVASG---HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP 237 (792)
Q Consensus 168 ~t------g~~v~t~~-h~s~V~sVafSpdG~~LasgSd---d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~ 237 (792)
++ .+++..+. ....|+++.|++|.++|+.+|. +.+++..+.+...-..-...-..-..|+|++|+|.+.+
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~ 496 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGY 496 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCce
Confidence 64 46666664 6778999999999999999983 44999888665432210011223467999999999998
Q ss_pred EEEEEeeCcc
Q 036953 238 FVLTAEVNDL 247 (792)
Q Consensus 238 LlaS~s~~dL 247 (792)
++++.....+
T Consensus 497 lAvGNe~grv 506 (514)
T KOG2055|consen 497 LAVGNEAGRV 506 (514)
T ss_pred EEeecCCCce
Confidence 8877764443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.2e-10 Score=126.34 Aligned_cols=190 Identities=18% Similarity=0.253 Sum_probs=147.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-EEEEecCC-CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN-CLKVLSGH-RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk-~v~~L~gH-~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
+.+|.+|||+.+.+.||.+-.||.|.||++..+- +...+.++ .+.|.+++|.+ +..|++.+.+|+|.-||+.++++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEEecccCce
Confidence 6789999999999999999999999999998754 34556654 46899999995 67899999999999999999999
Q ss_pred EEEec-cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 173 IGSCD-FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 173 v~t~~-h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
...++ ..+.|++++.+|.+..++.+++++ ++.++....+... ...+....+.|.++.|+|++..++.++.++-|+
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~-~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir-- 179 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY-KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR-- 179 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE-EeecccccceEEEEEecCCccEEEecccCceEE--
Confidence 99886 678999999999999999998766 6666665554332 223344568999999999999888887666444
Q ss_pred CCceeeecCCCcccCCCCceEEEEecCCCEEEEee-ccC-cccCCCceEEEeEECCCCcEEE
Q 036953 251 DSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAA-ELP-LMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 251 d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s-~l~-~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+|++..++..++-+ .+. +-++-+..||++.|-.||..+.
T Consensus 180 ---------------------iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~s 220 (691)
T KOG2048|consen 180 ---------------------IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIAS 220 (691)
T ss_pred ---------------------EEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEE
Confidence 44445554444222 222 2233678899999999998886
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=122.78 Aligned_cols=217 Identities=16% Similarity=0.206 Sum_probs=155.8
Q ss_pred CCCCCC--CCCC-CCCCCCCCCceEeeecccceeeCC-CC-------ceeeeEEeeCCCceEeecCCCceeecCCcEEEE
Q 036953 6 WPHDQN--SLRS-QPSNHLRRRARNVSRLLAHREISP-KT-------KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVS 74 (792)
Q Consensus 6 w~~~~~--~~~~-~~~~s~~s~~r~V~~l~~~rels~-~t-------k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S 74 (792)
|-+.|. +|.. +-..++...-+++|+.-..+..+. +. ...-++.|+|+|..+-+|
T Consensus 112 wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--------------- 176 (406)
T KOG2919|consen 112 WYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--------------- 176 (406)
T ss_pred eeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec---------------
Confidence 555555 2322 333667778899998866554441 11 134577888888776666
Q ss_pred EeCCCeEEEEec-cCC-----------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcE
Q 036953 75 WVEAESLRHLSA-KYC-----------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141 (792)
Q Consensus 75 ~s~d~sIrvWd~-~t~-----------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vt 141 (792)
...+|++++. +.+ --.+..+-+.|++|+| +.+.++.|+....+-||.-..+.++..+-+|.+.|+
T Consensus 177 --ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 177 --YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT 254 (406)
T ss_pred --ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCee
Confidence 3456666666 222 1123456689999999 778999999999999999888889999999999999
Q ss_pred EEEEccCCCCEEEEEeC-CCeEEEEECCC-CcEEEEec-cCC-CeeEE--EEcCCCcEEEEEc-CCeEEEEECCCCCccc
Q 036953 142 VVRFHPLRSEILASGSL-DHEVRLWDANT-SECIGSCD-FYR-PIASI--AFHAEGELLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~-DgtVrLWDl~t-g~~v~t~~-h~s-~V~sV--afSpdG~~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
.++|++ +++.|++|.. |-.|.+||++. +.++..+. |.. .-..| ...|++++|++|+ ++.|++||+++....
T Consensus 255 hL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~- 332 (406)
T KOG2919|consen 255 HLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE- 332 (406)
T ss_pred eEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc-
Confidence 999999 8899999874 77899999997 45665553 322 23334 4468999999997 555999999885432
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 215 SPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 215 ~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+.....+.+.++.|+++|--. |+++++
T Consensus 333 -~sv~~~~sd~vNgvslnP~mp-ilatss 359 (406)
T KOG2919|consen 333 -VSVTGNYSDTVNGVSLNPIMP-ILATSS 359 (406)
T ss_pred -ccccccccccccceecCcccc-eeeecc
Confidence 234566889999999999966 444443
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=122.52 Aligned_cols=164 Identities=16% Similarity=0.258 Sum_probs=127.4
Q ss_pred EEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEE--ecCCC-CCcE
Q 036953 71 GLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTGNCLKV--LSGHR-RTPW 141 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tgk~v~~--L~gH~-~~Vt 141 (792)
.++.....+++++++..++ .+++|+..++.++|.. ....+.+|+.||+|++||+++...... +.++. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 4556667788999988775 4678999999999987 466889999999999999988765444 34555 4566
Q ss_pred EEEEccCCCCEEEEEe----CCCeEEEEECCCCcE-EEEe--ccCCCeeEEEEcCCC-cEEEEEcCCe-EEEEECCCCCc
Q 036953 142 VVRFHPLRSEILASGS----LDHEVRLWDANTSEC-IGSC--DFYRPIASIAFHAEG-ELLAVASGHK-LYIWPYNNKEE 212 (792)
Q Consensus 142 sVafSP~dg~lLaSgS----~DgtVrLWDl~tg~~-v~t~--~h~s~V~sVafSpdG-~~LasgSdd~-V~IWDlrt~~~ 212 (792)
+++.+- +.+++++|+ .|-.|.+||++..+. +..+ .|...|+++.|||.. ++|++||-++ |.|||++...+
T Consensus 122 ~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 122 CLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred EeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 677665 667777775 466799999998765 6666 489999999999976 6888888544 99999987765
Q ss_pred ccCCeEEecCCCCeEEEEEccCC
Q 036953 213 ASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 213 ~~~~~~~~~h~~sVtsVafSPdG 235 (792)
.........+...|..+.|+.++
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCC
Confidence 44344556678889999999888
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=129.77 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=133.5
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
.+...+.+..|+++|. .+++.++|+.|++|.-..- .+.....+|+|++|.|+.+.++.+..
T Consensus 102 AH~~A~~~gRW~~dGt----------------gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGA----------------GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred hhhhhhhhcccCCCCc----------------eeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 3444556666666653 6778889999999985422 44566788999999998888877765
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEE
Q 036953 116 DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLA 195 (792)
Q Consensus 116 DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~La 195 (792)
+ .+.|=.+.....+-..++|.+-|.++.|++ ..+++++|+.|-..++||-........-.|+.+|++++|.|+ +.++
T Consensus 166 ~-h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~ 242 (737)
T KOG1524|consen 166 G-HISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYL 242 (737)
T ss_pred C-eEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-ccee
Confidence 5 466767776666777889999999999999 889999999999999999865544444468899999999999 8888
Q ss_pred EEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 196 VASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 196 sgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+++.+.+++ . ....+.|..++|++||..+..+++
T Consensus 243 v~S~nt~R~---~-----------~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 243 LWSYNTARF---S-----------SPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred eeeeeeeee---c-----------CCCccceEEEEEcCCCceeecccc
Confidence 888766661 1 123466899999999998776665
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.9e-10 Score=126.47 Aligned_cols=182 Identities=14% Similarity=0.119 Sum_probs=119.1
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEE-C
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTH-G 115 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS-~ 115 (792)
....+....|+|+++.++... .+ ..+..|.+|+..+++ +.........++|+|||++|+.++ .
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s-----~~--------~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~ 268 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVS-----FE--------NKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSK 268 (429)
T ss_pred CCCccccceEcCCCCEEEEEE-----ec--------CCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEec
Confidence 344677889999988665431 01 123356667665442 222223345789999999988765 6
Q ss_pred CCeEEEE--ECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCC-cEEEEeccCCCeeEEEEcCCC
Q 036953 116 DHTVKII--DCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRLWDANTS-ECIGSCDFYRPIASIAFHAEG 191 (792)
Q Consensus 116 DGtVrIW--Dl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrLWDl~tg-~~v~t~~h~s~V~sVafSpdG 191 (792)
+|.+.|| |+.+++ ...+..+...+....|+| |++.|+.++ .++..++|++... .....+.+.. ....|+|||
T Consensus 269 ~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG 344 (429)
T PRK01742 269 DGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADG 344 (429)
T ss_pred CCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCC
Confidence 7766555 666665 455666777788999999 787666554 5788888876532 2222333333 457899999
Q ss_pred cEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 192 ELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 192 ~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
++|+..+.+.+.+||+.+++... .... .....+.|+|+|+.++.++.
T Consensus 345 ~~ia~~~~~~i~~~Dl~~g~~~~----lt~~-~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 345 KTLVMINGDNVVKQDLTSGSTEV----LSST-FLDESPSISPNGIMIIYSST 391 (429)
T ss_pred CEEEEEcCCCEEEEECCCCCeEE----ecCC-CCCCCceECCCCCEEEEEEc
Confidence 99988887778889998776321 1111 12356789999998887764
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=132.57 Aligned_cols=209 Identities=13% Similarity=0.156 Sum_probs=164.0
Q ss_pred CceEeeecccceeeCC---CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-----CcCCCC
Q 036953 24 RARNVSRLLAHREISP---KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----PLVPPP 95 (792)
Q Consensus 24 ~~r~V~~l~~~rels~---~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----~L~gH~ 95 (792)
+-.+||++...++.+. +...+.++.++.... ....|.+++.|..|+++|...+ ++.+|.
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~-------------~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS 547 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL-------------TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS 547 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchh-------------hhHhhhhccCCceEEEEecccccchhhhhcccc
Confidence 4467888888777663 445677777765521 2245667788999999998744 688999
Q ss_pred CCeEEEEEcCCC--CEEEEEECCCeEEEEECCC-CcEEEEecCC-----CCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 96 RSTIAAAFSPDG--RTLASTHGDHTVKIIDCQT-GNCLKVLSGH-----RRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 96 ~~V~sLafSPDG--~~LaSGS~DGtVrIWDl~t-gk~v~~L~gH-----~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
..|+++.|..+| .+.++++.|+.|. |+... ..-...|..| ...+.+++..| ..+++++++.|+.|+|||+
T Consensus 548 ssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i 625 (1080)
T KOG1408|consen 548 SSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDI 625 (1080)
T ss_pred cceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEec
Confidence 999999999877 7899999998775 44332 1112233322 35788999999 8999999999999999999
Q ss_pred CCCcEEEEec----cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 168 NTSECIGSCD----FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 168 ~tg~~v~t~~----h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
.+++.++.|+ +++....+..+|.|.||++++.++ |.++|+-++++.. ...+|..-|+.+.|.+|-+.|+..+
T Consensus 626 ~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA---~m~GHsE~VTG~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 626 ESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA---QMTGHSEAVTGVKFLNDCKHLISVS 702 (1080)
T ss_pred cccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh---hhcCcchheeeeeecccchhheeec
Confidence 9999999984 567788899999999999988555 9999999999764 6788999999999999999999888
Q ss_pred eeCccccC
Q 036953 243 EVNDLDSS 250 (792)
Q Consensus 243 s~~dLrs~ 250 (792)
++.-|-.|
T Consensus 703 gDgCIFvW 710 (1080)
T KOG1408|consen 703 GDGCIFVW 710 (1080)
T ss_pred CCceEEEE
Confidence 76544433
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=112.87 Aligned_cols=147 Identities=21% Similarity=0.303 Sum_probs=116.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
..|++|-..|..+-++.++.|+.++-||+.+|+..+.++||++.|.++.--. ....++||++||++|+||+++++++..
T Consensus 115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEE
Confidence 3589999999777777778999999999999999999999999999998854 456789999999999999999999988
Q ss_pred ecc-----------CCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 176 CDF-----------YRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 176 ~~h-----------~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
++. ..+|.+++ -+...|++|++.++.+|+++..+.. ..+.-..++..+.|.. +.+++.+.-
T Consensus 194 ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~t----~vfpipa~v~~v~F~~--d~vl~~G~g 265 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSEST----CVFPIPARVHLVDFVD--DCVLIGGEG 265 (325)
T ss_pred eccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCce----EEEecccceeEeeeec--ceEEEeccc
Confidence 742 23455554 4566899888878999999998853 4556677788899964 445666644
Q ss_pred CccccCC
Q 036953 245 NDLDSSD 251 (792)
Q Consensus 245 ~dLrs~d 251 (792)
..+..+.
T Consensus 266 ~~v~~~~ 272 (325)
T KOG0649|consen 266 NHVQSYT 272 (325)
T ss_pred cceeeee
Confidence 4454443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-09 Score=112.09 Aligned_cols=159 Identities=16% Similarity=0.301 Sum_probs=109.6
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---CcC-CCCCCeEEEEEcCCCCEEEEE--ECC
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---PLV-PPPRSTIAAAFSPDGRTLAST--HGD 116 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---~L~-gH~~~V~sLafSPDG~~LaSG--S~D 116 (792)
...++.|+++|..+..-.. ... +...+-.. ....|..++.+.. .+. .....|.+++|+|+|+.|++. ..+
T Consensus 7 ~~~~~~W~~~G~~l~~~~~-~~~-~~~~ks~~--~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~ 82 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQ-TRV-DKSGKSYY--GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMP 82 (194)
T ss_pred ceEEEEecccCCEEEEEEE-Eee-ccCcceEE--eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCC
Confidence 3467889999986533211 000 11111111 1122333333322 111 234469999999999987655 356
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC---CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcE
Q 036953 117 HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD---HEVRLWDANTSECIGSCDFYRPIASIAFHAEGEL 193 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D---gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~ 193 (792)
..|.|||++ ++.+..+. ...+..+.|+| ++++|++++.+ |.|.+||+++.+.+..+.+.. +..++|+|||++
T Consensus 83 ~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~ 157 (194)
T PF08662_consen 83 AKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRY 157 (194)
T ss_pred cccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCE
Confidence 799999996 66666664 56778999999 99999998754 679999999999988887665 689999999999
Q ss_pred EEEEc-------CCeEEEEECCCC
Q 036953 194 LAVAS-------GHKLYIWPYNNK 210 (792)
Q Consensus 194 LasgS-------dd~V~IWDlrt~ 210 (792)
|+++. +++++||++...
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEEeccceeccccEEEEEecCe
Confidence 99885 345999998543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=130.15 Aligned_cols=203 Identities=13% Similarity=0.198 Sum_probs=151.1
Q ss_pred eEEeeCCCceEee--cCCCceeecCCcEEEEEeCCCeEEEEeccCC------------CcCCCCCCeEEEEEcCCCCEEE
Q 036953 46 KRQWVDASKLKTC--GPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------------PLVPPPRSTIAAAFSPDGRTLA 111 (792)
Q Consensus 46 s~aWspd~~lla~--G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------------~L~gH~~~V~sLafSPDG~~La 111 (792)
...|++...+... +-.+.........+++++++++|++|+.... ++.+|.++|.|+++.+++..++
T Consensus 281 ~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y 360 (577)
T KOG0642|consen 281 TKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY 360 (577)
T ss_pred heecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence 4456666543211 1122222334567899999999999998321 4679999999999999999999
Q ss_pred EEECCCeEEEEECCCC----------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE--------
Q 036953 112 STHGDHTVKIIDCQTG----------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI-------- 173 (792)
Q Consensus 112 SGS~DGtVrIWDl~tg----------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v-------- 173 (792)
+|+.||+|+.|++... .....|.||.+.|+.+++|+ ..+.|++|+.||+|++|+.....+.
T Consensus 361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~ 439 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEH 439 (577)
T ss_pred eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCcccc
Confidence 9999999999966421 23456789999999999999 7788999999999999987654330
Q ss_pred ------------------------------------EEec--------cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECC
Q 036953 174 ------------------------------------GSCD--------FYRPIASIAFHAEGELLAVASGHK-LYIWPYN 208 (792)
Q Consensus 174 ------------------------------------~t~~--------h~s~V~sVafSpdG~~LasgSdd~-V~IWDlr 208 (792)
..+. ....++.+.++|.+.+.+++-.+. |+++|..
T Consensus 440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 0000 012356788899998888888554 9999999
Q ss_pred CCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 209 NKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 209 t~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
+++... ....|...++++++.|+|.+|+....+..++.+..
T Consensus 520 ~~~~l~---s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 520 TGKILH---SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccccch---heeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 988543 45668899999999999999888887776665443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-08 Score=110.51 Aligned_cols=211 Identities=11% Similarity=0.107 Sum_probs=124.8
Q ss_pred CCCceEeeecccceeeC-----CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCCCC
Q 036953 22 RRRARNVSRLLAHREIS-----PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPR 96 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels-----~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~ 96 (792)
..+.+.+|+.....++. ........+.++|+++.+.++.. .++....|...+++.+...... ....
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~----~~~~i~~~~~~~~g~l~~~~~~-----~~~~ 80 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR----PEFRVLSYRIADDGALTFAAES-----PLPG 80 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC----CCCcEEEEEECCCCceEEeeee-----cCCC
Confidence 35677888874322211 11123455677777775533311 1222233333333333322211 1223
Q ss_pred CeEEEEEcCCCCEEEEEEC-CCeEEEEECCCC----cEEEEecCCCCCcEEEEEccCCCCEEEE-EeCCCeEEEEECCCC
Q 036953 97 STIAAAFSPDGRTLASTHG-DHTVKIIDCQTG----NCLKVLSGHRRTPWVVRFHPLRSEILAS-GSLDHEVRLWDANTS 170 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~-DGtVrIWDl~tg----k~v~~L~gH~~~VtsVafSP~dg~lLaS-gS~DgtVrLWDl~tg 170 (792)
....++|+|++++|++++. ++.|.+|++++. +.+..+. +.....+++++| +++++++ ...++.|.+||+.+.
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCC
Confidence 4678999999999988774 889999999742 2233333 334467789999 7777754 456799999999863
Q ss_pred cEEE-------EeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCC-cccCCeEEe------cCCCCeEEEEEccC
Q 036953 171 ECIG-------SCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKE-EASSPIIVL------KTRRSLRAVHFHPH 234 (792)
Q Consensus 171 ~~v~-------t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~-~~~~~~~~~------~h~~sVtsVafSPd 234 (792)
..+. ..........+.|+|+|++|+++. ++.|.+||++... ......... .+......+.|+|+
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 3221 122345567899999999998886 5669999997421 111000111 11223346889999
Q ss_pred CCeEEEEEe
Q 036953 235 AAPFVLTAE 243 (792)
Q Consensus 235 G~~LlaS~s 243 (792)
+++++++..
T Consensus 239 g~~lyv~~~ 247 (330)
T PRK11028 239 GRHLYACDR 247 (330)
T ss_pred CCEEEEecC
Confidence 998887753
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.6e-11 Score=136.20 Aligned_cols=207 Identities=16% Similarity=0.214 Sum_probs=149.3
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
.+..++++++|..+++|..++. .+.||...|+.++.+.+...++++++|..|++|.+.++.++.++.+|++.|+++
T Consensus 201 tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtai 280 (1113)
T KOG0644|consen 201 TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAI 280 (1113)
T ss_pred ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeee
Confidence 3456888899999999998866 568999999999999988899999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCc--------------EEEEec-----------------cCCCeeEEEEcCCCc
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSE--------------CIGSCD-----------------FYRPIASIAFHAEGE 192 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~--------------~v~t~~-----------------h~s~V~sVafSpdG~ 192 (792)
+|+| - .+.+.||++++||.+-.. .+..+. ....+..++|...+-
T Consensus 281 afsP-~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~l 355 (1113)
T KOG0644|consen 281 AFSP-R----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLL 355 (1113)
T ss_pred ccCc-c----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccce
Confidence 9999 2 377899999999987110 000000 000122233333333
Q ss_pred EEEEEc------------CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCC
Q 036953 193 LLAVAS------------GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSP 260 (792)
Q Consensus 193 ~LasgS------------dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~s 260 (792)
.+++.+ +..+.+|++.++.... ....|.+.++.+.+||-...+..+++.+
T Consensus 356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H---~l~ghsd~~yvLd~Hpfn~ri~msag~d--------------- 417 (1113)
T KOG0644|consen 356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH---NLMGHSDEVYVLDVHPFNPRIAMSAGYD--------------- 417 (1113)
T ss_pred EEEeccccccccceeeeeeeEeeeeecccchhhh---hhcccccceeeeeecCCCcHhhhhccCC---------------
Confidence 333332 2237788887776543 4566788888888998877666555422
Q ss_pred CcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 261 GYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 261 g~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
...++|+...|.-+.... . ..+.+.+..||+||..++
T Consensus 418 -------gst~iwdi~eg~pik~y~-----~-gh~kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 418 -------GSTIIWDIWEGIPIKHYF-----I-GHGKLVDGKFSQDGTSIA 454 (1113)
T ss_pred -------CceEeeecccCCcceeee-----c-ccceeeccccCCCCceEe
Confidence 345666666665555444 1 267888999999999887
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-10 Score=127.98 Aligned_cols=146 Identities=20% Similarity=0.307 Sum_probs=120.6
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE---
Q 036953 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS--- 175 (792)
Q Consensus 99 ~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t--- 175 (792)
.+++|+.+|..+++|+.||++|||+..+...+.....|.+.|.++.|+| |+++|++.+.| ..++||++++-++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6899999999999999999999999877777777788999999999999 99999999999 899999987611100
Q ss_pred -----------------------e-----------------cc------------CCCeeEEEEcCCCcEEEEEc-CCeE
Q 036953 176 -----------------------C-----------------DF------------YRPIASIAFHAEGELLAVAS-GHKL 202 (792)
Q Consensus 176 -----------------------~-----------------~h------------~s~V~sVafSpdG~~LasgS-dd~V 202 (792)
+ .. ...|.+++.+.+|++++.|+ ++.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 0 00 22578999999999999999 5559
Q ss_pred EEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 203 YIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 203 ~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
-|++..+-+..+ .....|...|+.|.|+||.++++..+.++...
T Consensus 306 ai~~~~~lq~~~--~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 306 AIYDAKSLQRLQ--YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAA 349 (398)
T ss_pred EEEEeceeeeeE--eehhhheeeeeeEEEcCCcCcccccccCCcee
Confidence 999998877653 34456888999999999999888877666544
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-10 Score=126.56 Aligned_cols=149 Identities=19% Similarity=0.287 Sum_probs=111.6
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+.+|.+.|.++...|.|.+|++|+.||+|+||.+.+|.|++.+. -.+.|.+|+|+|.....++.+.....+.+-+..-|
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 47999999999999999999999999999999999999999987 55689999999933333333333333444332110
Q ss_pred --------------------------------------cEEEEeccCCCeeEEEEcCCCcEEEEEcC----CeEEEEECC
Q 036953 171 --------------------------------------ECIGSCDFYRPIASIAFHAEGELLAVASG----HKLYIWPYN 208 (792)
Q Consensus 171 --------------------------------------~~v~t~~h~s~V~sVafSpdG~~LasgSd----d~V~IWDlr 208 (792)
..-..+.+...|..+.||..|.||++... ..|.|.++.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 01123457788999999999999998762 239999997
Q ss_pred CCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 209 NKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 209 t~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+..... .+....+.|.++.|||...++++++.
T Consensus 555 K~~sQ~---PF~kskG~vq~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 555 KRKSQS---PFRKSKGLVQRVKFHPSKPYLFVATQ 586 (733)
T ss_pred cccccC---chhhcCCceeEEEecCCCceEEEEec
Confidence 766432 23345678999999999998887765
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-09 Score=111.95 Aligned_cols=162 Identities=27% Similarity=0.416 Sum_probs=131.0
Q ss_pred CCCeEEEEeccC-----CCcCCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCC
Q 036953 77 EAESLRHLSAKY-----CPLVPPPRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 77 ~d~sIrvWd~~t-----~~L~gH~~~V~sLafSPDG~~LaSGS~-DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg 150 (792)
.++.+++|+... ..+..|...|..++|+|+++.+++++. |+.+++|++..++.+..+.+|...|.+++|+| ++
T Consensus 132 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 210 (466)
T COG2319 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP-DG 210 (466)
T ss_pred CCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC-Cc
Confidence 378899998875 256789999999999999999998885 99999999998888999999999999999998 76
Q ss_pred C-EEEEEeCCCeEEEEECCCCcEEE-Ee-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 151 E-ILASGSLDHEVRLWDANTSECIG-SC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 151 ~-lLaSgS~DgtVrLWDl~tg~~v~-t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
. ++++++.|+.|++||...+..+. .+ .+.... -..|++++.++++++ ++.+++||++..... ......|...+
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~v 287 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL--LRTLSGHSSSV 287 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE--EEEEecCCccE
Confidence 6 66666999999999999887777 34 344443 338999998888777 455999999877651 11225678899
Q ss_pred EEEEEccCCCeEEEEE
Q 036953 227 RAVHFHPHAAPFVLTA 242 (792)
Q Consensus 227 tsVafSPdG~~LlaS~ 242 (792)
.++.|+|++..+++.+
T Consensus 288 ~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 288 LSVAFSPDGKLLASGS 303 (466)
T ss_pred EEEEECCCCCEEEEee
Confidence 9999999888777733
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.7e-09 Score=117.58 Aligned_cols=200 Identities=16% Similarity=0.141 Sum_probs=131.7
Q ss_pred eEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.++|.... .+..+...+...+|||||+.|+..+. +..|.+||+.+++.... ....+.+..+.|+| |++.|
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SP-DG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSP-DGSKL 257 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECC-CCCEE
Confidence 5777776433 34556678999999999999987643 45799999988864332 22334455789999 88777
Q ss_pred EEE-eCCC--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCC----eEEEEECCCCCcccCCeEEecCCCCe
Q 036953 154 ASG-SLDH--EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGH----KLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 154 aSg-S~Dg--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd----~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
+.. +.++ .|.+||+.+++..........+....|+|||+.|+..++. .|+++|+..++.. .........
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt~~~~~~ 333 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RITWEGSQN 333 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----EeecCCCCc
Confidence 654 4454 5889999988776655555677889999999988877642 2666677665432 222233445
Q ss_pred EEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC
Q 036953 227 RAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS 306 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG 306 (792)
....|+|||+.++........ ..+.+++..++....+... .......|+|||
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~--------------------~~I~~~dl~~g~~~~Lt~~--------~~~~~p~~SpDG 385 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQ--------------------QHIAKQDLATGGVQVLTDT--------FLDETPSIAPNG 385 (429)
T ss_pred cCEEECCCCCEEEEEEccCCC--------------------ceEEEEECCCCCeEEeCCC--------CCCCCceECCCC
Confidence 678999999988876643210 1234444444544433321 112357799999
Q ss_pred cEEEEcc
Q 036953 307 RIDLQHA 313 (792)
Q Consensus 307 r~lv~~~ 313 (792)
+.|++..
T Consensus 386 ~~i~~~s 392 (429)
T PRK03629 386 TMVIYSS 392 (429)
T ss_pred CEEEEEE
Confidence 9998433
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-09 Score=121.17 Aligned_cols=200 Identities=14% Similarity=0.160 Sum_probs=132.5
Q ss_pred eEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.+||.... ++..+...+.+.+|+|||+.|+..+. +..|++||+.+++... +..+.+......|+| +++.|
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp-DG~~l 262 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP-DGRRL 262 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC-CCCEE
Confidence 5777876533 35667778999999999999998874 3469999998877543 334455566789999 77655
Q ss_pred -EEEeCCC--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--Ce--EEEEECCCCCcccCCeEEecCCCCe
Q 036953 154 -ASGSLDH--EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG--HK--LYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 154 -aSgS~Dg--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d~--V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
++.+.++ .|.+||+.+++......+.......+|+|||+.|+..++ +. |+++|+.+++... ........
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~----lt~~g~~~ 338 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER----LTFQGNYN 338 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----eecCCCCc
Confidence 4556655 599999998876554445455567899999998888773 22 7888887655321 22223345
Q ss_pred EEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC
Q 036953 227 RAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS 306 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG 306 (792)
..++|+|||+.++.+..... . ..+.++...++..+.+..+ .......|+|||
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~----~----------------~~I~v~d~~~g~~~~Lt~~--------~~~~~p~~spdG 390 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGG----Q----------------YRIAVMDLSTGSVRTLTPG--------SLDESPSFAPNG 390 (433)
T ss_pred cCEEECCCCCEEEEEECCCC----c----------------eeEEEEECCCCCeEECCCC--------CCCCCceECCCC
Confidence 57899999998887653210 0 0234444444444433221 123456899999
Q ss_pred cEEEEcc
Q 036953 307 RIDLQHA 313 (792)
Q Consensus 307 r~lv~~~ 313 (792)
+++++..
T Consensus 391 ~~i~~~s 397 (433)
T PRK04922 391 SMVLYAT 397 (433)
T ss_pred CEEEEEE
Confidence 9988443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-08 Score=110.30 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=111.3
Q ss_pred eCCCeEEEEeccC-CC-----cCCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC-CcE--EEEecCCCCCcEEEEE
Q 036953 76 VEAESLRHLSAKY-CP-----LVPPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQT-GNC--LKVLSGHRRTPWVVRF 145 (792)
Q Consensus 76 s~d~sIrvWd~~t-~~-----L~gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~t-gk~--v~~L~gH~~~VtsVaf 145 (792)
..++.|.+|+..+ ++ ...+......++++|++++|++++ .++.|.+|++.. ++. +.... ..+....+.|
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~ 87 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIST 87 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEE
Confidence 4567777777642 21 112345677899999999987765 478899999873 332 22222 3345778999
Q ss_pred ccCCCCEEEEEe-CCCeEEEEECCC-C---cEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccC---
Q 036953 146 HPLRSEILASGS-LDHEVRLWDANT-S---ECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASS--- 215 (792)
Q Consensus 146 SP~dg~lLaSgS-~DgtVrLWDl~t-g---~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~--- 215 (792)
+| +++++++++ .++.|.+||+.+ + +.+..+........++++|+++++++++ ++.|.+||+++......
T Consensus 88 ~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~ 166 (330)
T PRK11028 88 DH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP 166 (330)
T ss_pred CC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC
Confidence 99 888887776 488999999974 2 2333333444567889999999987766 46699999976432210
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 216 PIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 216 ~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.............+.|+|+|++++++..
T Consensus 167 ~~~~~~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 167 AEVTTVEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred CceecCCCCCCceEEECCCCCEEEEEec
Confidence 0011122344678999999998887765
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.5e-10 Score=119.84 Aligned_cols=161 Identities=19% Similarity=0.233 Sum_probs=132.9
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC------CCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeE
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ------TGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEV 162 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~------tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtV 162 (792)
.+.+|.+.|+++.|+.++++|++|+.|..+++|++. +.+++.... .|...|.+++|.. ...++++|+.+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 467899999999999999999999999999999985 334555443 3668899999998 88999999999999
Q ss_pred EEEECCCCcEEEEeccCC---CeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeE
Q 036953 163 RLWDANTSECIGSCDFYR---PIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPF 238 (792)
Q Consensus 163 rLWDl~tg~~v~t~~h~s---~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~L 238 (792)
.+-|+++.+.+..+.+.. .|..+..+|..+.|++.++++ |.+||.+.......+..........+.+.|+|....|
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999999999987655 899999999999999988666 9999998877443344444456778899999999888
Q ss_pred EEEEe------eCccccCC
Q 036953 239 VLTAE------VNDLDSSD 251 (792)
Q Consensus 239 laS~s------~~dLrs~d 251 (792)
+++.. +||++...
T Consensus 210 i~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred EEeccccCCCCceeecccc
Confidence 87665 66666443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.9e-09 Score=118.55 Aligned_cols=188 Identities=14% Similarity=0.100 Sum_probs=121.1
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEE
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLAST 113 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSG 113 (792)
+......+....|+|+++.++... .. .....|.+|+...+ .+......+..++|+|||++|+..
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s-----~~--------~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~ 260 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVT-----FE--------SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFA 260 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEE-----ec--------CCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEE
Confidence 333344677889999988765431 01 11234555555443 122333445678999999988865
Q ss_pred -ECCC--eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC-Ce--EEEEECCCCcEEEEeccCCCeeEEEE
Q 036953 114 -HGDH--TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD-HE--VRLWDANTSECIGSCDFYRPIASIAF 187 (792)
Q Consensus 114 -S~DG--tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D-gt--VrLWDl~tg~~v~t~~h~s~V~sVaf 187 (792)
+.++ .|++||+.+++... +..+...+....|+| |++.|+..+.+ +. |.++|+.+++...............|
T Consensus 261 ~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~ 338 (429)
T PRK03629 261 LSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADV 338 (429)
T ss_pred EcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEE
Confidence 3344 58899998887554 444455678899999 88888776654 44 55557777655443334445667899
Q ss_pred cCCCcEEEEEc-C-C--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 188 HAEGELLAVAS-G-H--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 188 SpdG~~LasgS-d-d--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
+|||++|+..+ + + .|++||+.+++... +.. ........|+|||+.++.++.+
T Consensus 339 SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~----Lt~-~~~~~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 339 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV----LTD-TFLDETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEE----eCC-CCCCCCceECCCCCEEEEEEcC
Confidence 99999988765 2 2 38999998775321 211 2234467899999988887753
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-09 Score=114.02 Aligned_cols=221 Identities=14% Similarity=0.188 Sum_probs=151.5
Q ss_pred CCCCCCceEeeeccccee-------eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC--
Q 036953 19 NHLRRRARNVSRLLAHRE-------ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-- 89 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~re-------ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-- 89 (792)
.+.....++||+...... ...+...+.++.|-+. ..++.+.+++.|+++++|.....
T Consensus 30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhP--------------EfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHP--------------EFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCc--------------cccceEEEEecCCceeeeeeccccc
Confidence 455666788887422111 1123334555555333 34567788899999999987422
Q ss_pred -----------CcCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCc------EEEEec-------CCCCCcEEE
Q 036953 90 -----------PLVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTGN------CLKVLS-------GHRRTPWVV 143 (792)
Q Consensus 90 -----------~L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tgk------~v~~L~-------gH~~~VtsV 143 (792)
++......|+.+.|.| -|-.+++++.||.++||+.-.-- ....++ .+.....|+
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cv 175 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCV 175 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEE
Confidence 3445667899999999 67899999999999999875321 222222 366678899
Q ss_pred EEcc--CCCCEEEEEeCC-----CeEEEEECCCCc--EE--EEe-ccCCCeeEEEEcCCC----cEEEEEcCCeEEEEEC
Q 036953 144 RFHP--LRSEILASGSLD-----HEVRLWDANTSE--CI--GSC-DFYRPIASIAFHAEG----ELLAVASGHKLYIWPY 207 (792)
Q Consensus 144 afSP--~dg~lLaSgS~D-----gtVrLWDl~tg~--~v--~t~-~h~s~V~sVafSpdG----~~LasgSdd~V~IWDl 207 (792)
.|+| ....+|+.|+.+ +.++||...... .. .++ ++..+|++++|.|.- ..||+++.++|+||.+
T Consensus 176 sWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v 255 (361)
T KOG2445|consen 176 SWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKV 255 (361)
T ss_pred eeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEE
Confidence 9998 345678877765 478999876532 22 222 689999999999963 5789999777999999
Q ss_pred CCCC------------c-----ccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 208 NNKE------------E-----ASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 208 rt~~------------~-----~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
+... . +........|+..|..+.|+-.|..|.+++.+..++.|...
T Consensus 256 ~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 256 KVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 7421 0 00011234588899999999999977777778888876643
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-10 Score=125.66 Aligned_cols=160 Identities=14% Similarity=0.220 Sum_probs=120.2
Q ss_pred cEEEEEeCCCeEEEEeccC---CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 036953 70 RGLVSWVEAESLRHLSAKY---CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH 146 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t---~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafS 146 (792)
..++.++.|+.+.+.+... ..+..|.+.+.+-.|+|||.-|++.+.||.|+||. ++|....++.....+|.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence 3466677888888776542 24678999999999999999999999999999999 4565545555567899999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC-CcEEEEeccCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCCC
Q 036953 147 PLRSEILASGSLDHEVRLWDANT-SECIGSCDFYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRR 224 (792)
Q Consensus 147 P~dg~lLaSgS~DgtVrLWDl~t-g~~v~t~~h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~~ 224 (792)
|+..+.+++.+. .+.+=.+.. .++++--.|.+-|.+++|++..+++++|+.| +.+|||-.... ......|..
T Consensus 155 p~S~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~----Lf~S~~~ey 228 (737)
T KOG1524|consen 155 PNSNSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN----LFTSAAEEY 228 (737)
T ss_pred CCCCceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc----cccCChhcc
Confidence 944455544433 334333433 3445545699999999999999999999955 59999975544 223455889
Q ss_pred CeEEEEEccCCC
Q 036953 225 SLRAVHFHPHAA 236 (792)
Q Consensus 225 sVtsVafSPdG~ 236 (792)
+|++++|+|+..
T Consensus 229 ~ITSva~npd~~ 240 (737)
T KOG1524|consen 229 AITSVAFNPEKD 240 (737)
T ss_pred ceeeeeeccccc
Confidence 999999999944
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-09 Score=108.77 Aligned_cols=142 Identities=17% Similarity=0.255 Sum_probs=98.6
Q ss_pred EEEEEcCCCCEEEEEEC----------CCeEEEEECCC-CcEEEEec-CCCCCcEEEEEccCCCCEEEEE--eCCCeEEE
Q 036953 99 IAAAFSPDGRTLASTHG----------DHTVKIIDCQT-GNCLKVLS-GHRRTPWVVRFHPLRSEILASG--SLDHEVRL 164 (792)
Q Consensus 99 ~sLafSPDG~~LaSGS~----------DGtVrIWDl~t-gk~v~~L~-gH~~~VtsVafSP~dg~lLaSg--S~DgtVrL 164 (792)
..+.|+++|++|+.-.. -+...||.++. +..+..+. ...++|.+++|+| +++.++.+ ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 46788888887754332 13345555422 22333333 2455799999999 77776544 46789999
Q ss_pred EECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc----CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 165 WDANTSECIGSCDFYRPIASIAFHAEGELLAVAS----GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 165 WDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS----dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
||++ ++.+..+. ...++.+.|+|+|++|++++ .+.|.+||.++.+.+. ...+ ..++.++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFEH-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee----cccc-CcEEEEEEcCCCCEEEE
Confidence 9997 66666665 46778999999999999987 2459999999666432 2233 35789999999999998
Q ss_pred EEeeCccc
Q 036953 241 TAEVNDLD 248 (792)
Q Consensus 241 S~s~~dLr 248 (792)
+...+.++
T Consensus 161 a~t~~r~~ 168 (194)
T PF08662_consen 161 ATTSPRLR 168 (194)
T ss_pred EEecccee
Confidence 87655333
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-09 Score=115.21 Aligned_cols=167 Identities=14% Similarity=0.237 Sum_probs=121.7
Q ss_pred EEEEEeCCCeEEEEeccCC---Cc-CCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC----c----------EEE
Q 036953 71 GLVSWVEAESLRHLSAKYC---PL-VPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG----N----------CLK 131 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~---~L-~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg----k----------~v~ 131 (792)
.+.....|.++++++.+.. .+ ......|.|++|-| .++.|+.|...| |.||..... . .+.
T Consensus 112 ~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred hhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhhe
Confidence 3445566778888877643 12 23356799999999 666788887765 899976421 1 122
Q ss_pred EecCCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECC
Q 036953 132 VLSGHRRTPWVVRFHPLRSEILASGSL-DHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYN 208 (792)
Q Consensus 132 ~L~gH~~~VtsVafSP~dg~lLaSgS~-DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlr 208 (792)
.-.+| .+|+++.|++ |+..+++++. |..|.+||..++..+... ...+.+.-+.|+|||.+|+.+. |...++|+..
T Consensus 191 ~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 191 QDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred eCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence 23456 6899999999 8999999884 677999999998877665 4667788999999999888877 6669999664
Q ss_pred CCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 209 NKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 209 t~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
...... +. .. ..+.|...+|+|+|++|+.++.
T Consensus 269 q~wt~e-rw-~l-gsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 269 QSWTKE-RW-IL-GSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ccceec-ce-ec-cCCceeeeeecCCCCEEEEEEc
Confidence 432111 11 22 3348999999999999998876
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-10 Score=126.81 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=125.5
Q ss_pred ecccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC-----cCCCCCCeEEEEEc
Q 036953 30 RLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP-----LVPPPRSTIAAAFS 104 (792)
Q Consensus 30 ~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~-----L~gH~~~V~sLafS 104 (792)
++.-.+|+..++..|++++|+.+|.++++| ++|..+.+||....+ -.+|...|.+++|-
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SG----------------SDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASG----------------SDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFV 102 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeec----------------CCcceEEeecchhcceeeeeecccccceeEEeee
Confidence 345567888999999999999999888777 455556666654322 24799999999999
Q ss_pred C--CCCEEEEEECCCeEEEEECCCC----------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-
Q 036953 105 P--DGRTLASTHGDHTVKIIDCQTG----------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE- 171 (792)
Q Consensus 105 P--DG~~LaSGS~DGtVrIWDl~tg----------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~- 171 (792)
| +.+.+++|..|..|+++|+... +....+..|...|..++..|...+.+.++++||+++-+|++...
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 9 6678899999999999999842 34456678999999999999666999999999999999998731
Q ss_pred ------EEEEe----ccCCCeeEEEEcCCC-cEEEEEcCCe-EEEEECCC
Q 036953 172 ------CIGSC----DFYRPIASIAFHAEG-ELLAVASGHK-LYIWPYNN 209 (792)
Q Consensus 172 ------~v~t~----~h~s~V~sVafSpdG-~~LasgSdd~-V~IWDlrt 209 (792)
+...+ ..--...++..+|.. .+|++|+.+- .++||.++
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 11111 112346788999976 5788887666 99999543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.7e-08 Score=101.43 Aligned_cols=202 Identities=22% Similarity=0.342 Sum_probs=139.7
Q ss_pred eCCCeEEEEeccCCC-----cCCCC-CCeEEEEE-cCCCC-EEEEEEC-CCeEEEEECCC-CcEEEEecCCCCCcEEEEE
Q 036953 76 VEAESLRHLSAKYCP-----LVPPP-RSTIAAAF-SPDGR-TLASTHG-DHTVKIIDCQT-GNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 76 s~d~sIrvWd~~t~~-----L~gH~-~~V~sLaf-SPDG~-~LaSGS~-DGtVrIWDl~t-gk~v~~L~gH~~~VtsVaf 145 (792)
..++.+.+|+..... +..+. ..+..+.+ ++++. .++..+. |+.+++||... ......+..|...|..+.|
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 163 (466)
T COG2319 84 SSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF 163 (466)
T ss_pred cCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEE
Confidence 356666666655442 22322 36777777 78787 5555444 99999999988 7788889999999999999
Q ss_pred ccCCCCEEEEEeC-CCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCc-EEEEEc-CCeEEEEECCCCCcccCCeEEec
Q 036953 146 HPLRSEILASGSL-DHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGE-LLAVAS-GHKLYIWPYNNKEEASSPIIVLK 221 (792)
Q Consensus 146 SP~dg~lLaSgS~-DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~-~LasgS-dd~V~IWDlrt~~~~~~~~~~~~ 221 (792)
+| ++..+++++. |+.+++|++..+..+..+. |...+.+++|+|++. ++++++ ++.|++||........ .....
T Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~--~~~~~ 240 (466)
T COG2319 164 SP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR--STLSG 240 (466)
T ss_pred CC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEe--eecCC
Confidence 99 7778888885 9999999999988877775 789999999999998 555535 5569999887444321 12344
Q ss_pred CCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCE-EEEeeccCcccCCCceEEEe
Q 036953 222 TRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDH-VSLAAELPLMSSLPFLIVPS 300 (792)
Q Consensus 222 h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~-~~l~s~l~~l~gh~~~VwdV 300 (792)
|.... -..|+|++..++.++.+..++. |....... .... .+|...|..+
T Consensus 241 ~~~~~-~~~~~~~~~~~~~~~~d~~~~~-----------------------~~~~~~~~~~~~~------~~~~~~v~~~ 290 (466)
T COG2319 241 HSDSV-VSSFSPDGSLLASGSSDGTIRL-----------------------WDLRSSSSLLRTL------SGHSSSVLSV 290 (466)
T ss_pred CCcce-eEeECCCCCEEEEecCCCcEEE-----------------------eeecCCCcEEEEE------ecCCccEEEE
Confidence 54543 2389999965654443433333 22222111 1111 2367888899
Q ss_pred EECCCCcEEE
Q 036953 301 VSIDDSRIDL 310 (792)
Q Consensus 301 ~~SpDGr~lv 310 (792)
.+.|++..++
T Consensus 291 ~~~~~~~~~~ 300 (466)
T COG2319 291 AFSPDGKLLA 300 (466)
T ss_pred EECCCCCEEE
Confidence 9999998888
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=116.22 Aligned_cols=178 Identities=14% Similarity=0.210 Sum_probs=130.4
Q ss_pred EEEEEeCCCeEEEEeccCCCcC------CCCCC---eEEEEEcCCCCEEEEEECCCeEEEEEC-CCCcE--EEEe-----
Q 036953 71 GLVSWVEAESLRHLSAKYCPLV------PPPRS---TIAAAFSPDGRTLASTHGDHTVKIIDC-QTGNC--LKVL----- 133 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L~------gH~~~---V~sLafSPDG~~LaSGS~DGtVrIWDl-~tgk~--v~~L----- 133 (792)
.+.+.+.+..|++||.-++++. .|.+. ..+++|+|||.+|+.|-. ..|++||+ +.|.. +...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccc
Confidence 3444567889999999988664 34443 568999999999998654 58999999 44432 1111
Q ss_pred cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCC
Q 036953 134 SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNK 210 (792)
Q Consensus 134 ~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~ 210 (792)
.+..+.|.+++|+|.+.+.++.++.-..+-|+.-..+.++..+ +|.+.|+.+.|+++|+.|++|. +++|..||++..
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 2347889999999988889999999999999988888888887 6999999999999999999998 677999999987
Q ss_pred CcccCCeEEecCCC-CeE--EEEEccCCCeEEEEEeeCccccCC
Q 036953 211 EEASSPIIVLKTRR-SLR--AVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 211 ~~~~~~~~~~~h~~-sVt--sVafSPdG~~LlaS~s~~dLrs~d 251 (792)
+.+. ..+..|.. +-. -.+..|+++.|+....+.-|+.|+
T Consensus 284 ~~pv--~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 284 RDPV--YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD 325 (406)
T ss_pred cchh--hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence 7542 12222322 222 345578888555543444444443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9e-11 Score=136.05 Aligned_cols=152 Identities=18% Similarity=0.291 Sum_probs=122.4
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
.|.+|...|+|+.|...|.++++|+.|..|+||...++.++....||.+.|+.++.+. +...+++++.|+.|++|-+..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence 4679999999999999999999999999999999999999999999999999999998 888999999999999999999
Q ss_pred CcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeE-EecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 170 SECIGSC-DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPII-VLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 170 g~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~-~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+.++..+ +|.+.|++++|+|-. .++.++.+++||.+-.-....+.. .....+-+.++.|-.++..+++...+.
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 9999887 699999999999976 333366699999982222111111 122345566667766666565544433
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.9e-10 Score=124.44 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=108.3
Q ss_pred EEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--------CcEEEEecCCCCCcEEEEEccCCCCE
Q 036953 81 LRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT--------GNCLKVLSGHRRTPWVVRFHPLRSEI 152 (792)
Q Consensus 81 IrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t--------gk~v~~L~gH~~~VtsVafSP~dg~l 152 (792)
.+.|+.+. ++..|.+.|..++|.+....|++++.||++++|++.. -+++.+|.+|.++|.|+++.+ +++.
T Consensus 281 ~k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~ 358 (577)
T KOG0642|consen 281 TKKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEH 358 (577)
T ss_pred heecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceE
Confidence 45677766 6788999999999999999999999999999999932 246789999999999999999 9999
Q ss_pred EEEEeCCCeEEEEECCCC------c---EE-E-EeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCc
Q 036953 153 LASGSLDHEVRLWDANTS------E---CI-G-SCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEE 212 (792)
Q Consensus 153 LaSgS~DgtVrLWDl~tg------~---~v-~-t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~ 212 (792)
+++|+.||+|++|++... . .+ . ..+|.+.++.+++|.....|++++ |+++++|+......
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 999999999999966521 1 11 1 136899999999999888888887 77799999866553
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.7e-10 Score=123.45 Aligned_cols=162 Identities=14% Similarity=0.261 Sum_probs=122.0
Q ss_pred CCcEEEEEeCCCeEEEEeccCCC---c-----CCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC------------
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCP---L-----VPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQT------------ 126 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~---L-----~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~t------------ 126 (792)
.+..+..+..-+.+.+.+..... + .--+..|+|+.|-| +...|+.+..+|.+++||...
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 34455666666666666654321 1 11246799999999 666788888999999997631
Q ss_pred --Cc--------------EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcC
Q 036953 127 --GN--------------CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHA 189 (792)
Q Consensus 127 --gk--------------~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSp 189 (792)
+. ++..+.--.+.|...+|+| |+++||+.+.||.+||+|..+.+.+..+. ..+...|++|+|
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 11 1111122345788999999 99999999999999999999887766664 567899999999
Q ss_pred CCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEcc
Q 036953 190 EGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP 233 (792)
Q Consensus 190 dG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP 233 (792)
||++|++|+.|. |.||.+...+.+ ..-.+|+.+|+.|+|.|
T Consensus 343 DGKyIvtGGEDDLVtVwSf~erRVV---ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEERRVV---ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CccEEEecCCcceEEEEEeccceEE---EeccccccceeeEeecc
Confidence 999999999555 999999877743 35567999999999998
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-08 Score=116.21 Aligned_cols=251 Identities=15% Similarity=0.161 Sum_probs=160.9
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCC--EEEEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGR--TLAST 113 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~--~LaSG 113 (792)
.++..+.++.-++.+.++ .++++|+++|+|.+.++... ...+.|.|++|+|.+. .||++
T Consensus 398 GHtg~Vr~iSvdp~G~wl----------------asGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWL----------------ASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred ccCCeEEEEEecCCccee----------------eecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEE
Confidence 344455555555555544 44466666666666655211 2235699999999543 45544
Q ss_pred ECCCeEEEEEC---------------------------------CCC----cEEEEecCCCCCcEEEEEccCCCCEEEEE
Q 036953 114 HGDHTVKIIDC---------------------------------QTG----NCLKVLSGHRRTPWVVRFHPLRSEILASG 156 (792)
Q Consensus 114 S~DGtVrIWDl---------------------------------~tg----k~v~~L~gH~~~VtsVafSP~dg~lLaSg 156 (792)
-... +.|-+. ... +-+...-.|...|+.+.||. +|++|++.
T Consensus 462 ~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV 539 (733)
T KOG0650|consen 462 VGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATV 539 (733)
T ss_pred ecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEe
Confidence 3332 333332 110 01223335888999999999 99999998
Q ss_pred eCC---CeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEc
Q 036953 157 SLD---HEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFH 232 (792)
Q Consensus 157 S~D---gtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafS 232 (792)
.-+ +.|.|.++...+...-| ...+.+.++.|||...+|++++...|+|||+.+....+ ........|..++.|
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvK---kL~tg~kwiS~msih 616 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVK---KLLTGSKWISSMSIH 616 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHH---HHhcCCeeeeeeeec
Confidence 654 56899999887666555 46778999999999999999998889999998876544 344567789999999
Q ss_pred cCCCeEEEEEeeC-----ccccCCCc---eeeecCCC-cccCCCCceEEEEecC-CCEEEEee-------------ccCc
Q 036953 233 PHAAPFVLTAEVN-----DLDSSDSS---MTRATSPG-YLRYPPPAVFVANAQS-GDHVSLAA-------------ELPL 289 (792)
Q Consensus 233 PdG~~LlaS~s~~-----dLrs~d~~---~~l~t~sg-~~~~p~~~~~l~~~ss-G~~~~l~s-------------~l~~ 289 (792)
|.|..|++++.+. |++..... +.+..... ...+......|+.+.+ |..+.+-. .+..
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 9999999888744 34433222 11221111 2233333334444444 33322211 3345
Q ss_pred ccCCCce----EEEeEECCCCcEEE
Q 036953 290 MSSLPFL----IVPSVSIDDSRIDL 310 (792)
Q Consensus 290 l~gh~~~----VwdV~~SpDGr~lv 310 (792)
+.+|... |.++.|.|.-=+++
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpWLf 721 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPWLF 721 (733)
T ss_pred ccCceeecccceEeecccCCCceEE
Confidence 6778777 99999999988888
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.2e-10 Score=119.25 Aligned_cols=137 Identities=20% Similarity=0.340 Sum_probs=111.4
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC-CCCEEEEEeCCCeEEEEECCCCcEEEEec--c--CCCe
Q 036953 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL-RSEILASGSLDHEVRLWDANTSECIGSCD--F--YRPI 182 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~-dg~lLaSgS~DgtVrLWDl~tg~~v~t~~--h--~s~V 182 (792)
..++++-..|.|++||..+++.+..|+++...+..++|... .++.+.+|+.||+||+||++....+..+. . ..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 56788888999999999999999999999999999999763 56889999999999999999865554442 2 2467
Q ss_pred eEEEEcCCCcEEEEEc----CCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 183 ASIAFHAEGELLAVAS----GHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 183 ~sVafSpdG~~LasgS----dd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
.+++..-.++.+++|. .+. |.+||+|..+... ......|.+.|++|+|||....++++++.+
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL-RQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchh-hhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 7777776788888886 223 9999999888631 123456999999999999999999999844
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.5e-09 Score=116.75 Aligned_cols=187 Identities=14% Similarity=0.142 Sum_probs=127.2
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEE-E
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLA-S 112 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~La-S 112 (792)
+......+....|+|+++.++... .. ..+..|.+|+..+++ +..+...+...+|+|||+.|+ +
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s------~~-------~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~ 263 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMS------YA-------NGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMS 263 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEE------ec-------CCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEE
Confidence 444455678889999987664431 00 123456677765542 345566778899999999876 4
Q ss_pred EECCCe--EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEeccCCCeeEEEE
Q 036953 113 THGDHT--VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DH--EVRLWDANTSECIGSCDFYRPIASIAF 187 (792)
Q Consensus 113 GS~DGt--VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-Dg--tVrLWDl~tg~~v~t~~h~s~V~sVaf 187 (792)
.+.++. |.+||+.+++. ..+..+........|+| |++.|+..+. ++ .|.+||+.+++..........+....|
T Consensus 264 ~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~ 341 (435)
T PRK05137 264 LSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVW 341 (435)
T ss_pred EecCCCceEEEEECCCCce-EEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEE
Confidence 455554 77779887764 45666766778899999 8888777663 33 688889887765544444556677899
Q ss_pred cCCCcEEEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 188 HAEGELLAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 188 SpdG~~LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+|+|++|+.... + .|.+||+..+... .......+..+.|+|||+.|+.+..
T Consensus 342 SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-----~lt~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 342 SPRGDLIAFTKQGGGQFSIGVMKPDGSGER-----ILTSGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CCCCCEEEEEEcCCCceEEEEEECCCCceE-----eccCCCCCCCCeECCCCCEEEEEEc
Confidence 999999887652 2 3889998654421 1222234678899999998887664
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-08 Score=110.04 Aligned_cols=257 Identities=14% Similarity=0.118 Sum_probs=166.3
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---------CcC--CCCCCeEEEEEcC
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---------PLV--PPPRSTIAAAFSP 105 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---------~L~--gH~~~V~sLafSP 105 (792)
+..++..++.+.|+.++.+ |+++++|...++|++... .+. .|...|.|++|+-
T Consensus 52 ~~~H~GCiNAlqFS~N~~~----------------L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~ 115 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRF----------------LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL 115 (609)
T ss_pred hhhhccccceeeeccCCeE----------------EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc
Confidence 3344455556656555544 455567777788876421 233 4667899999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEecC--CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEEe---ccC
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSG--HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE-CIGSC---DFY 179 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk~v~~L~g--H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~v~t~---~h~ 179 (792)
..+++++|..+++|.+.|+.+.+.+.++.. ..+.|..+..+| -.++|++.+.++.|.+||.+..+ ++..+ ...
T Consensus 116 ~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 116 ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 889999999999999999999998888752 235999999999 57899999999999999998765 33222 456
Q ss_pred CCeeEEEEcCCCc-EEEEEc-CCeEEEEECCCCCcccCCe-EEec---CCCCeEEEEEccCCCeEEEEEe-----eCccc
Q 036953 180 RPIASIAFHAEGE-LLAVAS-GHKLYIWPYNNKEEASSPI-IVLK---TRRSLRAVHFHPHAAPFVLTAE-----VNDLD 248 (792)
Q Consensus 180 s~V~sVafSpdG~-~LasgS-dd~V~IWDlrt~~~~~~~~-~~~~---h~~sVtsVafSPdG~~LlaS~s-----~~dLr 248 (792)
..+..+.|+|... +|++.+ .+++.+||.+......... ..+. .......+.|+|+|..+++.-. ++|+.
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 6788999999875 556665 4559999998876431000 1111 1223467889999887765322 33433
Q ss_pred cCCCc-eeee-cCCCcccCCC------------------CceEEEEecC----CCE-------------EEEeeccCccc
Q 036953 249 SSDSS-MTRA-TSPGYLRYPP------------------PAVFVANAQS----GDH-------------VSLAAELPLMS 291 (792)
Q Consensus 249 s~d~~-~~l~-t~sg~~~~p~------------------~~~~l~~~ss----G~~-------------~~l~s~l~~l~ 291 (792)
+.-.. +... ...||.+.+. -.+.+|.... +.+ +.+..++.+++
T Consensus 275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr 354 (609)
T KOG4227|consen 275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR 354 (609)
T ss_pred cccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe
Confidence 31111 1111 0112222110 0122232211 111 23444667889
Q ss_pred CCCceEEEeEECCCCcEEE
Q 036953 292 SLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 292 gh~~~VwdV~~SpDGr~lv 310 (792)
||...+..|.|+|-..+|+
T Consensus 355 GHRSv~NQVRF~~H~~~l~ 373 (609)
T KOG4227|consen 355 GHRSVPNQVRFSQHNNLLV 373 (609)
T ss_pred cccccccceeecCCcceEe
Confidence 9999999999999999998
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-09 Score=113.72 Aligned_cols=148 Identities=19% Similarity=0.233 Sum_probs=124.0
Q ss_pred CceeecCCcEEEEEeCCCeEEEEeccCCCc-------CCCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCcEEEE
Q 036953 62 DSSVRDAKRGLVSWVEAESLRHLSAKYCPL-------VPPPRSTIAAAFSPDGRTLASTH--GDHTVKIIDCQTGNCLKV 132 (792)
Q Consensus 62 a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L-------~gH~~~V~sLafSPDG~~LaSGS--~DGtVrIWDl~tgk~v~~ 132 (792)
..+++-.+.+|+.+-++. |.++|++.-++ ..+..++.++.++.++.+|+.=+ ..|.|.|||+.+-+.+..
T Consensus 90 IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~ 168 (391)
T KOG2110|consen 90 ILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNT 168 (391)
T ss_pred eEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeE
Confidence 445666777888877665 99999986532 35777788888888888888543 468999999999999999
Q ss_pred ecCCCCCcEEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEecc---CCCeeEEEEcCCCcEEEEEcC-CeEEEEEC
Q 036953 133 LSGHRRTPWVVRFHPLRSEILASGSLDHE-VRLWDANTSECIGSCDF---YRPIASIAFHAEGELLAVASG-HKLYIWPY 207 (792)
Q Consensus 133 L~gH~~~VtsVafSP~dg~lLaSgS~Dgt-VrLWDl~tg~~v~t~~h---~s~V~sVafSpdG~~LasgSd-d~V~IWDl 207 (792)
+..|++.+-+++|++ +|.+|||++..|+ ||++.+.+|+.+..|.. ...|.+++|++++++|++.++ ++|+||.+
T Consensus 169 I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 169 INAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred EEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 999999999999999 9999999999998 79999999999999853 346889999999999999885 55999999
Q ss_pred CCCC
Q 036953 208 NNKE 211 (792)
Q Consensus 208 rt~~ 211 (792)
....
T Consensus 248 ~~~~ 251 (391)
T KOG2110|consen 248 EKVS 251 (391)
T ss_pred cccc
Confidence 7655
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=123.09 Aligned_cols=144 Identities=23% Similarity=0.347 Sum_probs=121.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
.|+.++|-|||..|+.+..| .+.|||.+.|..+..+++|+..|.+++|+. |++.+++|+.|+.|.+|+-+- +-+..+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~kl-EG~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKL-EGILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccc-cceeee
Confidence 79999999999999988766 699999999999999999999999999999 999999999999999998643 334556
Q ss_pred ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 177 DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 177 ~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
.|.+.|.|+.|+|-...|++++=...-+|........ .......|.+++|..||.+++.+-....|.
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~-----K~kss~R~~~CsWtnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS-----KHKSSSRIICCSWTNDGQYLALGMFNGTIS 157 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH-----hhhhheeEEEeeecCCCcEEEEeccCceEE
Confidence 8999999999999999999998444778887554322 223356789999999999998877766554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-08 Score=114.36 Aligned_cols=183 Identities=13% Similarity=0.097 Sum_probs=119.3
Q ss_pred CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEE-EEECC
Q 036953 41 TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLA-STHGD 116 (792)
Q Consensus 41 tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~La-SGS~D 116 (792)
...+....|+|+++.++.... .. ....|.+|+...++ +..+.....+.+|+|||++|+ +.+.+
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~----~~---------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSF----ER---------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred CCccccccCCCCCCEEEEEec----CC---------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC
Confidence 335667788888876554310 01 12345566655432 223344456789999999876 44555
Q ss_pred C--eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CCe--EEEEECCCCcEEEEeccCCCeeEEEEcCCC
Q 036953 117 H--TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DHE--VRLWDANTSECIGSCDFYRPIASIAFHAEG 191 (792)
Q Consensus 117 G--tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-Dgt--VrLWDl~tg~~v~t~~h~s~V~sVafSpdG 191 (792)
+ .|++||+.+++. ..+..+.......+|+| |++.|+.++. ++. |.++|+.+++.............++|+|||
T Consensus 270 g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 270 GNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDG 347 (433)
T ss_pred CCceEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCC
Confidence 5 599999988774 44555666667899999 8887776663 444 667787777654433333445578999999
Q ss_pred cEEEEEc-C-C--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 192 ELLAVAS-G-H--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 192 ~~LasgS-d-d--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
++|+..+ + + .|++||+.+++.. ...+........|+|||+.++.+..
T Consensus 348 ~~Ia~~~~~~~~~~I~v~d~~~g~~~-----~Lt~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 348 KKIAMVHGSGGQYRIAVMDLSTGSVR-----TLTPGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CEEEEEECCCCceeEEEEECCCCCeE-----ECCCCCCCCCceECCCCCEEEEEEe
Confidence 9988765 2 2 3999999776532 1222224456799999998887664
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-08 Score=109.36 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=112.0
Q ss_pred eEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGD---HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~D---GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.+++.... .+..+...+...+|+|||++|+.+..+ ..|++||+.+++... +..+.+.+..++|+| +++.|
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg~~l 248 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DGSKL 248 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEE
Confidence 4666665422 345666678999999999999987654 479999998886543 334566677899999 77665
Q ss_pred E-EEeCCC--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCe
Q 036953 154 A-SGSLDH--EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 154 a-SgS~Dg--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
+ +.+.++ .|.+||+.+++......+........|+|+|+.|+..++ + .|++||+...+.. .+..+...+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCc
Confidence 5 555444 588999988766554445455567899999998877653 2 4888898765522 233344567
Q ss_pred EEEEEccCCCeEEEEEe
Q 036953 227 RAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s 243 (792)
..+.|+|+|+.++.+..
T Consensus 325 ~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHR 341 (417)
T ss_pred cCeEECCCCCEEEEEEc
Confidence 78899999998887764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-08 Score=111.75 Aligned_cols=201 Identities=18% Similarity=0.170 Sum_probs=125.9
Q ss_pred eEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGD---HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~D---GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.++|.... ++..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+| |++.|
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG~~l 254 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-DGRTL 254 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEE
Confidence 4555555422 345677889999999999999887743 459999999887543 333445667899999 77766
Q ss_pred E-EEeCCCeEEEE--ECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--CeEEEE--ECCCCCcccCCeEEecCCCCe
Q 036953 154 A-SGSLDHEVRLW--DANTSECIGSCDFYRPIASIAFHAEGELLAVASG--HKLYIW--PYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 154 a-SgS~DgtVrLW--Dl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d~V~IW--Dlrt~~~~~~~~~~~~h~~sV 226 (792)
+ +.+.++...+| |+..++......+........|+|||+.|+..++ +...|| |+..++.. .........
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~----~lt~~g~~~ 330 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ----RVTFTGSYN 330 (427)
T ss_pred EEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE----EEecCCCCc
Confidence 5 66778876666 4555543332234445567899999998887663 334444 54444321 111222334
Q ss_pred EEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC
Q 036953 227 RAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS 306 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG 306 (792)
....|+|||+.++.++.... ...++++...++..+.+..+ .......|+|||
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g--------------------~~~I~v~d~~~g~~~~lt~~--------~~~~~p~~spdg 382 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGG--------------------AFKLYVQDLATGQVTALTDT--------TRDESPSFAPNG 382 (427)
T ss_pred CceEECCCCCEEEEEEccCC--------------------cEEEEEEECCCCCeEEccCC--------CCccCceECCCC
Confidence 56889999998887664220 01244555455544433321 122457899999
Q ss_pred cEEEEccc
Q 036953 307 RIDLQHAS 314 (792)
Q Consensus 307 r~lv~~~~ 314 (792)
++|++...
T Consensus 383 ~~l~~~~~ 390 (427)
T PRK02889 383 RYILYATQ 390 (427)
T ss_pred CEEEEEEe
Confidence 99984433
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.4e-09 Score=111.66 Aligned_cols=165 Identities=16% Similarity=0.228 Sum_probs=123.6
Q ss_pred CCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC---CCCCcEEEEEccCCC
Q 036953 77 EAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG---HRRTPWVVRFHPLRS 150 (792)
Q Consensus 77 ~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g---H~~~VtsVafSP~dg 150 (792)
+.+.+++++.+..... -.+..|.++.++ -++|+++=.+. |+|||+++-+.++++.. +...+.++.+++ .+
T Consensus 66 qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n 141 (391)
T KOG2110|consen 66 QPRKLKVVHFKKKTTICEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-AN 141 (391)
T ss_pred CCceEEEEEcccCceEEEEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC-CC
Confidence 3456777777655322 245678888886 56777777664 99999999998887763 444565566655 55
Q ss_pred CEEEEEe--CCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcC-Ce-EEEEECCCCCcccCCeEEec--CC
Q 036953 151 EILASGS--LDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASG-HK-LYIWPYNNKEEASSPIIVLK--TR 223 (792)
Q Consensus 151 ~lLaSgS--~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSd-d~-V~IWDlrt~~~~~~~~~~~~--h~ 223 (792)
.+++--+ ..|.|.+||+.+-+++..+. |++.+.+++|+++|.+||++++ ++ |+++.+..++... .+.. ..
T Consensus 142 ~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~---eFRRG~~~ 218 (391)
T KOG2110|consen 142 CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY---EFRRGTYP 218 (391)
T ss_pred ceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee---eeeCCcee
Confidence 5766432 46889999999999998885 9999999999999999999995 44 9999998888654 2222 24
Q ss_pred CCeEEEEEccCCCeEEEEEeeCccc
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
..|++++|+|++++|.+++....|.
T Consensus 219 ~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 219 VSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred eEEEEEEECCCCCeEEEecCCCeEE
Confidence 5789999999999888777655444
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.1e-09 Score=110.12 Aligned_cols=190 Identities=14% Similarity=0.196 Sum_probs=139.9
Q ss_pred ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-------CcCCCCCCeEEEEEcCCCCEEEEEE
Q 036953 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-------PLVPPPRSTIAAAFSPDGRTLASTH 114 (792)
Q Consensus 42 k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-------~L~gH~~~V~sLafSPDG~~LaSGS 114 (792)
..+++.+|+++...++.+. ..+.+.++..... .+..|...|+++.|+|..+.|++|+
T Consensus 11 ~pitchAwn~drt~iAv~~----------------~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs 74 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSP----------------NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS 74 (361)
T ss_pred CceeeeeecCCCceEEecc----------------CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc
Confidence 4678899999987766553 2333444443322 4678999999999999999999999
Q ss_pred CCCeEEEEECCC-C--cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-----ccCCCeeEEE
Q 036953 115 GDHTVKIIDCQT-G--NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-----DFYRPIASIA 186 (792)
Q Consensus 115 ~DGtVrIWDl~t-g--k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-----~h~s~V~sVa 186 (792)
.|..-++|.... + ++..++..+++.++++.|+| +++.|++|+..+.|.+|=++...--+.- ...+.|.+++
T Consensus 75 ~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 75 HDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred CCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence 999999999833 3 45566677999999999999 9999999999999999988765433221 3567789999
Q ss_pred EcCCCcEEEEEc-CCeEEEEECC-----CCCccc-----CCe-----EEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 187 FHAEGELLAVAS-GHKLYIWPYN-----NKEEAS-----SPI-----IVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 187 fSpdG~~LasgS-dd~V~IWDlr-----t~~~~~-----~~~-----~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
|||++-+|+.|+ |.+.++|..- ...... .+. ......+.+..+.|+|+|..|+-.+.+..+.
T Consensus 154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 999999999998 6667777542 211100 000 0113467899999999999988777655444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.8e-08 Score=108.34 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=108.0
Q ss_pred EEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEE
Q 036953 81 LRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGD---HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILA 154 (792)
Q Consensus 81 IrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~D---GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLa 154 (792)
|.++|.... .+..+...+...+|+|||++|+..+.+ ..|.+||+.+++... +....+.+....|+| |++.|+
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~la 258 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSKLA 258 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCEEE
Confidence 555555433 345667788999999999999877643 368999998886543 333444556789999 777665
Q ss_pred -EEeCCC--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCeE
Q 036953 155 -SGSLDH--EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSLR 227 (792)
Q Consensus 155 -SgS~Dg--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sVt 227 (792)
+.+.++ .|.+||+.+++......+........|+|||+.|+..++ + .|+++|+.+++... .........
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~----lt~~~~~~~ 334 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER----VTFVGNYNA 334 (430)
T ss_pred EEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----eecCCCCcc
Confidence 555555 588889998876554445555667899999998877663 2 38888887765322 111122334
Q ss_pred EEEEccCCCeEEEEEe
Q 036953 228 AVHFHPHAAPFVLTAE 243 (792)
Q Consensus 228 sVafSPdG~~LlaS~s 243 (792)
...|+|+|+.++.+..
T Consensus 335 ~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 335 RPRLSADGKTLVMVHR 350 (430)
T ss_pred ceEECCCCCEEEEEEc
Confidence 6789999998887763
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-08 Score=112.50 Aligned_cols=185 Identities=17% Similarity=0.139 Sum_probs=117.9
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEE-EEEC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLA-STHG 115 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~La-SGS~ 115 (792)
....+....|+|+++.++.... .+ ....|.+|+..+++ +......+...+|+|||+.|+ +.+.
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~----~~---------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~ 260 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSF----ES---------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSR 260 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEc----cC---------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEcc
Confidence 3445677889999876654310 01 12335666655442 223344567899999999887 4567
Q ss_pred CCeEEEEE--CCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEE--CCCCcEEEEeccCCCeeEEEEcCC
Q 036953 116 DHTVKIID--CQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DHEVRLWD--ANTSECIGSCDFYRPIASIAFHAE 190 (792)
Q Consensus 116 DGtVrIWD--l~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-DgtVrLWD--l~tg~~v~t~~h~s~V~sVafSpd 190 (792)
++...||. +.+++ ...+..+........|+| |++.|+..+. ++...+|. +.+++...............|+||
T Consensus 261 ~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD 338 (427)
T PRK02889 261 DGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD 338 (427)
T ss_pred CCCceEEEEECCCCC-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence 77766665 44444 555665666677889999 8887776554 45666665 445544333323334456889999
Q ss_pred CcEEEEEcC-C---eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 191 GELLAVASG-H---KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 191 G~~LasgSd-d---~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
|++|+..+. + .|++||+.+++... ... ......+.|+|||+.|+.+...
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g~~~~----lt~-~~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATGQVTA----LTD-TTRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCCCeEE----ccC-CCCccCceECCCCCEEEEEEec
Confidence 999887662 2 39999998776322 211 2234678999999988887753
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.8e-08 Score=106.38 Aligned_cols=216 Identities=14% Similarity=0.151 Sum_probs=138.4
Q ss_pred CCCceEeeecccc---eeeCCCCceeeeEEeeCCCce-EeecCCCceeecCCcEEEEEeCCC----eEEEEeccCCCc--
Q 036953 22 RRRARNVSRLLAH---REISPKTKYVPKRQWVDASKL-KTCGPSDSSVRDAKRGLVSWVEAE----SLRHLSAKYCPL-- 91 (792)
Q Consensus 22 ~s~~r~V~~l~~~---rels~~tk~V~s~aWspd~~l-la~G~~a~sv~d~~~~L~S~s~d~----sIrvWd~~t~~L-- 91 (792)
...-+.+|+.... +..+...+.+++++|.|.+.. ++.|. ..+..+|+.+... .++.-...-.++
T Consensus 118 nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC------r~gIciW~~s~tln~~r~~~~~s~~~~qvl~ 191 (445)
T KOG2139|consen 118 NDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC------RAGICIWSDSRTLNANRNIRMMSTHHLQVLQ 191 (445)
T ss_pred cCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee------cceeEEEEcCcccccccccccccccchhhee
Confidence 4455677766542 122234457899999998643 32221 2333444432211 111111111122
Q ss_pred -CCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 92 -VPPPRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 92 -~gH~~~V~sLafSPDG~~LaSGS~-DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
.+| ..|++|+|++||..+++++. |..|.|||.+++..+.....--+.++-+.|+| |+++|+.++-|+..++|+...
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcc
Confidence 344 57999999999999999885 67899999999987766655567889999999 999999999999999996554
Q ss_pred C-cEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCccc---------CCeE--------EecC----CCCeE
Q 036953 170 S-ECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEAS---------SPII--------VLKT----RRSLR 227 (792)
Q Consensus 170 g-~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~---------~~~~--------~~~h----~~sVt 227 (792)
. ....-.-..+.|...+|+|+|++|..+..+.-.+|.+.-.++.. .... .... .+.+.
T Consensus 270 ~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq 349 (445)
T KOG2139|consen 270 SWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQ 349 (445)
T ss_pred cceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccc
Confidence 3 33333334558999999999998777665544455442221100 0000 0011 35678
Q ss_pred EEEEccCCCeEEEEEeeC
Q 036953 228 AVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 228 sVafSPdG~~LlaS~s~~ 245 (792)
+++|.|.|.+++++-+-.
T Consensus 350 ~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 350 CLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred eeeECCCCCEEEEEEcCC
Confidence 999999999999887633
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=119.50 Aligned_cols=224 Identities=16% Similarity=0.166 Sum_probs=153.5
Q ss_pred CCCCCceEeeecccceeeCCCCceeeeEEeeCCCceEeecCCCceeec---CCcEEEEEeCCCeEEEEeccCCCc-----
Q 036953 20 HLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRD---AKRGLVSWVEAESLRHLSAKYCPL----- 91 (792)
Q Consensus 20 s~~s~~r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d---~~~~L~S~s~d~sIrvWd~~t~~L----- 91 (792)
....+.++||+....+. .+....-+|.+-..++........+-+ ..+.|+..++-..|++||.+..++
T Consensus 1129 as~dGvIRIwk~y~~~~----~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKW----KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred eccCceEEEeccccccc----CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc
Confidence 34566788998766543 233445567666554333222223333 456677777789999999986643
Q ss_pred CCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc---EEEEecCCCCC--cEEEEEccCCCCEEEEEeCCCeEEEE
Q 036953 92 VPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN---CLKVLSGHRRT--PWVVRFHPLRSEILASGSLDHEVRLW 165 (792)
Q Consensus 92 ~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk---~v~~L~gH~~~--VtsVafSP~dg~lLaSgS~DgtVrLW 165 (792)
.+....|+++.-+- .|+.|+.|-.||.|++||.+... .+...+.|+.. |..+.+.+..-..|++|+.||.|++|
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence 23344566665544 57999999999999999986432 46777788877 99999998444569999999999999
Q ss_pred ECCCCcEEEEe------ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCccc---CCeEEecCCCCeEEEEEccCCC
Q 036953 166 DANTSECIGSC------DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEAS---SPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 166 Dl~tg~~v~t~------~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~---~~~~~~~h~~sVtsVafSPdG~ 236 (792)
|++.......+ +.++..+++..|++...+|+|+...|+||++...+... .+.+.......+.+++|||..-
T Consensus 1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred ecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhH
Confidence 99984222111 23456999999999999999998679999996654321 1222233456789999999877
Q ss_pred eEEEEEeeCcc
Q 036953 237 PFVLTAEVNDL 247 (792)
Q Consensus 237 ~LlaS~s~~dL 247 (792)
.++++..++.+
T Consensus 1365 llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1365 LLAAGSADSTV 1375 (1387)
T ss_pred hhhhccCCceE
Confidence 55555434433
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-07 Score=106.55 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=105.8
Q ss_pred eEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGD---HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~D---GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.++|.... .+..+...+.+..|+|||++|+..+.+ ..|.+||+.+++... +....+......|+| |++.|
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKKL 276 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCEE
Confidence 4555554322 344566778899999999999876543 358899998876533 322233445789999 77766
Q ss_pred E-EEeCCCe--EEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCe
Q 036953 154 A-SGSLDHE--VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 154 a-SgS~Dgt--VrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
+ +.+.++. |.+||+.+++......+.......+|+|||+.|+..++ + .|+++|+.+++... ........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~----Lt~~g~~~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR----LTFEGEQN 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----EecCCCCC
Confidence 5 4566664 77889988876554445555678899999998877663 2 28888887765322 11122233
Q ss_pred EEEEEccCCCeEEEEEe
Q 036953 227 RAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s 243 (792)
...+|+|||+.++.+..
T Consensus 353 ~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 353 LGGSITPDGRSMIMVNR 369 (448)
T ss_pred cCeeECCCCCEEEEEEe
Confidence 45789999998887654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-07 Score=110.59 Aligned_cols=267 Identities=16% Similarity=0.130 Sum_probs=164.9
Q ss_pred CceeeeEEeeCCCc--e-EeecC--CCceeecCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcC-CCCEE
Q 036953 41 TKYVPKRQWVDASK--L-KTCGP--SDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSP-DGRTL 110 (792)
Q Consensus 41 tk~V~s~aWspd~~--l-la~G~--~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSP-DG~~L 110 (792)
...+....|.+++. + .++.. ...........+.. ..+..+.+|+.+... .......|.|+.|+| +...+
T Consensus 180 ~~~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll 258 (555)
T KOG1587|consen 180 KRQVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLS-EPDGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLL 258 (555)
T ss_pred hcceeeeeeccCCCcceEEEEeecccccccccccccccc-cCCceEEEEecCCCCCceEEEecCCceeEEEeccCCcceE
Confidence 34678889988876 2 22111 11110000011111 223378899987551 123467799999999 88899
Q ss_pred EEEECCCeEEEEECCCCcE--EEE----ecCCCCCcEEEEEccCCC--CEEEEEeCCCeEEEEECCCCcE-EEEe-----
Q 036953 111 ASTHGDHTVKIIDCQTGNC--LKV----LSGHRRTPWVVRFHPLRS--EILASGSLDHEVRLWDANTSEC-IGSC----- 176 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~--v~~----L~gH~~~VtsVafSP~dg--~lLaSgS~DgtVrLWDl~tg~~-v~t~----- 176 (792)
+.|..+|+|.+||+..+.. ... ...|..+++.+.|.. +. .-+++++.||.|..|+++.-.. +...
T Consensus 259 ~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~ 337 (555)
T KOG1587|consen 259 AGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK 337 (555)
T ss_pred EeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccc
Confidence 9999999999999987654 222 236899999999976 33 4499999999999999875321 1111
Q ss_pred -------ccCCCeeEEEEcCCC-cEEEEEcCCe-EEEEECCCCCcc----cCCe-EEecCCCCeEEEEEccCCCeEEEEE
Q 036953 177 -------DFYRPIASIAFHAEG-ELLAVASGHK-LYIWPYNNKEEA----SSPI-IVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 177 -------~h~s~V~sVafSpdG-~~LasgSdd~-V~IWDlrt~~~~----~~~~-~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
.....+++++|.+.. ..|++|++.+ |+--+-...+.. .+.. ....|.++|+.+.++|-+..+++++
T Consensus 338 ~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 338 KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee
Confidence 123468899999865 5677777544 544222222111 1112 3345889999999999999999999
Q ss_pred eeCccccCCCcee------eecCCC---cccC--CCCceEEEEecCCCEEEEee-----ccC--cccCCCceEEEeEECC
Q 036953 243 EVNDLDSSDSSMT------RATSPG---YLRY--PPPAVFVANAQSGDHVSLAA-----ELP--LMSSLPFLIVPSVSID 304 (792)
Q Consensus 243 s~~dLrs~d~~~~------l~t~sg---~~~~--p~~~~~l~~~ssG~~~~l~s-----~l~--~l~gh~~~VwdV~~Sp 304 (792)
++|.++.|..... +..... ...| ..+.+|+....+|+ +.++. ..+ ..+-+......+.+++
T Consensus 418 gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~ 496 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWDLLQDDEEPVLSQKVCSPALTRVRWSP 496 (555)
T ss_pred ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhhhhccccCCcccccccccccceeecCC
Confidence 9999998876521 111111 1334 33555655544444 44443 111 2222345566677888
Q ss_pred CCcEEE
Q 036953 305 DSRIDL 310 (792)
Q Consensus 305 DGr~lv 310 (792)
+|++|+
T Consensus 497 ~g~~la 502 (555)
T KOG1587|consen 497 NGKLLA 502 (555)
T ss_pred CCcEEE
Confidence 899998
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-09 Score=117.34 Aligned_cols=94 Identities=24% Similarity=0.359 Sum_probs=87.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
.+.|+..+|+|||++||+.+.||.+||||..+.+.+..++..-+...|++|+| |+++|++|++|--|.+|.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 45799999999999999999999999999999888877777788999999999 99999999999999999999998887
Q ss_pred Ee-ccCCCeeEEEEcC
Q 036953 175 SC-DFYRPIASIAFHA 189 (792)
Q Consensus 175 t~-~h~s~V~sVafSp 189 (792)
.- .|+++|..|+|+|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 75 6999999999986
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-07 Score=105.37 Aligned_cols=181 Identities=15% Similarity=0.152 Sum_probs=120.0
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEE-ECC--
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLAST-HGD-- 116 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSG-S~D-- 116 (792)
.+....|+|+++.++.... . .....|.+|+..++. +..+...+.+++|+|||+.|+.. +.+
T Consensus 191 ~~~~p~~Spdg~~la~~~~-----~--------~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSF-----E--------SGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred ceecccCCCCCCEEEEEEc-----C--------CCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCC
Confidence 4566678888776654310 0 012356677765542 33455567789999999988654 434
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC-C--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcE
Q 036953 117 HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD-H--EVRLWDANTSECIGSCDFYRPIASIAFHAEGEL 193 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D-g--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~ 193 (792)
..|++||+.+++. ..+..+........|+| +++.|+.++.. + .|.+||+.+++.............+.|+|+|++
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCE
Confidence 3588999987764 44444555566789999 88877766543 3 588889888775544445566778899999999
Q ss_pred EEEEcC-C---eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 194 LAVASG-H---KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 194 LasgSd-d---~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
|+.++. + .|++||+.++... .. ..........|+|+|+.|+.+..
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~~----~l-~~~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGER----VL-TDTGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCeE----Ec-cCCCCCCCceECCCCCEEEEEEe
Confidence 888763 2 4999998775421 11 11223445689999998887765
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.3e-07 Score=102.76 Aligned_cols=187 Identities=11% Similarity=0.042 Sum_probs=117.5
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEE-
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLAS- 112 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaS- 112 (792)
+......+....|+|+++.++.... .++. ..|.+|+..+++ +......+...+|+|||++|+.
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~----~~~~---------~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~ 260 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSF----EQKR---------PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFV 260 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEc----CCCC---------CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEE
Confidence 3334445677789999876654311 0111 234455554331 2223334557899999998874
Q ss_pred EECCC--eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEeccCCCeeEEEE
Q 036953 113 THGDH--TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DH--EVRLWDANTSECIGSCDFYRPIASIAF 187 (792)
Q Consensus 113 GS~DG--tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-Dg--tVrLWDl~tg~~v~t~~h~s~V~sVaf 187 (792)
.+.++ .|++||+.+++.. .+..+........|+| +++.++..+. ++ .|.++|+.+++...............|
T Consensus 261 ~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 261 LSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRL 338 (430)
T ss_pred EccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEE
Confidence 44444 6888899887644 4555666677789999 7776665553 33 577888888775443322233446789
Q ss_pred cCCCcEEEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 188 HAEGELLAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 188 SpdG~~LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+|+|++|+.... + .|.+||+.+++... .. .........|+|||+.++.+..
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~----lt-~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGSVRI----LT-DTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCCEEE----cc-CCCCCCCceECCCCCEEEEEEe
Confidence 999999887762 2 38999998765321 11 1112235689999998887764
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.9e-08 Score=102.78 Aligned_cols=152 Identities=15% Similarity=0.224 Sum_probs=111.5
Q ss_pred CCCeEEEEEcC-CCC--EEEEEECCCeEEEEECCCCcEE----------EEecCCCCCcEEEEEccCCCCEEEEEeCCCe
Q 036953 95 PRSTIAAAFSP-DGR--TLASTHGDHTVKIIDCQTGNCL----------KVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161 (792)
Q Consensus 95 ~~~V~sLafSP-DG~--~LaSGS~DGtVrIWDl~tgk~v----------~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt 161 (792)
.+.+.|..+.. +++ .++.|-.+|.|.+||+.++..+ .....|..+|.++.|.+ .-+.=++++.+..
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dk 228 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDK 228 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcccc
Confidence 44566666544 444 4567778999999999987433 33346999999999988 5555677888888
Q ss_pred EEEEECCCC--cEEE--Eec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC
Q 036953 162 VRLWDANTS--ECIG--SCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 162 VrLWDl~tg--~~v~--t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG 235 (792)
+..|+++.. .+.. .+. .+-.+..+..-||++.||+++ |++|+||+.++..... ....|...|++++|+|+.
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA---VLkyHsagvn~vAfspd~ 305 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA---VLKYHSAGVNAVAFSPDC 305 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh---hhhhhhcceeEEEeCCCC
Confidence 999988753 2211 111 334578889999999999999 8889999999988543 556689999999999998
Q ss_pred CeEEEEEeeCccccC
Q 036953 236 APFVLTAEVNDLDSS 250 (792)
Q Consensus 236 ~~LlaS~s~~dLrs~ 250 (792)
..+++++.+..|..|
T Consensus 306 ~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 306 ELMAAASKDARISLW 320 (323)
T ss_pred chhhhccCCceEEee
Confidence 766666655544433
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.6e-07 Score=102.60 Aligned_cols=145 Identities=17% Similarity=0.214 Sum_probs=93.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEECCC---CcEEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHG-----DHTVKIIDCQT---GNCLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRL 164 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~-----DGtVrIWDl~t---gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrL 164 (792)
........+|||||++|+..+. |..+.+|++.. ++......++.+.....+|+| |++.|+..+ .++...+
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~l 307 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRI 307 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceE
Confidence 3444567899999999887653 22344477665 333344433334556789999 888776655 4665555
Q ss_pred E--ECCC-CcEEEEe-ccCCCeeEEEEcCCCcEEEEEcC----CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 165 W--DANT-SECIGSC-DFYRPIASIAFHAEGELLAVASG----HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 165 W--Dl~t-g~~v~t~-~h~s~V~sVafSpdG~~LasgSd----d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
| ++.. +.....+ .....+....|+|||+.|+..+. ..|++||+.+++... +......+....|+|||+
T Consensus 308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----LTTSPENKESPSWAIDSL 383 (428)
T ss_pred EEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----ccCCCCCccceEECCCCC
Confidence 5 4432 2222333 34456678999999998887652 239999998876432 222334567899999999
Q ss_pred eEEEEEe
Q 036953 237 PFVLTAE 243 (792)
Q Consensus 237 ~LlaS~s 243 (792)
.|+.+..
T Consensus 384 ~L~f~~~ 390 (428)
T PRK01029 384 HLVYSAG 390 (428)
T ss_pred EEEEEEC
Confidence 8887664
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-08 Score=113.55 Aligned_cols=199 Identities=18% Similarity=0.213 Sum_probs=145.7
Q ss_pred CCCceEeeecccceeeCCC-CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcC----CCCC
Q 036953 22 RRRARNVSRLLAHREISPK-TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLV----PPPR 96 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels~~-tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~----gH~~ 96 (792)
.+++..||+......=|.+ ...++++.|-|-.= .|++.++.+-++.-|+.++++. --.+
T Consensus 189 QK~y~yvYD~~GtElHClk~~~~v~rLeFLPyHf----------------LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G 252 (545)
T KOG1272|consen 189 QKKYVYVYDNNGTELHCLKRHIRVARLEFLPYHF----------------LLVAASEAGFLKYQDVSTGKLVASIRTGAG 252 (545)
T ss_pred hhceEEEecCCCcEEeehhhcCchhhhcccchhh----------------eeeecccCCceEEEeechhhhhHHHHccCC
Confidence 4566667766555444432 23556665555533 3444556666777777777543 3456
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
.+..|+-+|-...+-+|...|+|.+|.....+++..+..|.++|.++++.+ ++.+++|.+.|..++|||+++-..+.++
T Consensus 253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeecccccccee
Confidence 788899999888999999999999999999999888899999999999999 9999999999999999999998777777
Q ss_pred ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCC--CcccCCeEEecCCCCeEEEEEccCCCeE
Q 036953 177 DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNK--EEASSPIIVLKTRRSLRAVHFHPHAAPF 238 (792)
Q Consensus 177 ~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~--~~~~~~~~~~~h~~sVtsVafSPdG~~L 238 (792)
....+...+++|..| +||.+-++.|.||.-.-. .....+.........|..+.|.|-++.|
T Consensus 332 ~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvL 394 (545)
T KOG1272|consen 332 RTPHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVL 394 (545)
T ss_pred ecCCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHee
Confidence 666777888888655 566666677999953222 1222233333345689999999988843
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.2e-07 Score=96.53 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=92.5
Q ss_pred CCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCCcE--EEEecCCCCCcEEEEEccCCCCEEEEEeCCCe-EEEEECCCC
Q 036953 95 PRSTIAAAFSPDGRTLAS-THGDHTVKIIDCQTGNC--LKVLSGHRRTPWVVRFHPLRSEILASGSLDHE-VRLWDANTS 170 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaS-GS~DGtVrIWDl~tgk~--v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt-VrLWDl~tg 170 (792)
+++..++.-.-+...||. |-.-|.|.|-|+...+. -..+.+|...|.+++.+- +|.++||+|..|| |||||..+|
T Consensus 136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCC
Confidence 444444443334344443 33468999999976654 367889999999999998 9999999999998 899999999
Q ss_pred cEEEEec---cCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCC
Q 036953 171 ECIGSCD---FYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKE 211 (792)
Q Consensus 171 ~~v~t~~---h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~ 211 (792)
+.+..+. ....|.+++|+|+..+|+++||. +|+||.++...
T Consensus 215 ~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 215 TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 9999985 44679999999999999999965 49999997654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.3e-07 Score=108.06 Aligned_cols=180 Identities=12% Similarity=0.084 Sum_probs=128.2
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEecc-------CC-CcCCCCCCeEEEEEcCCCCEEEEEE
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAK-------YC-PLVPPPRSTIAAAFSPDGRTLASTH 114 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~-------t~-~L~gH~~~V~sLafSPDG~~LaSGS 114 (792)
-.++.+++|++.++++|. .||.|.+|.-- +. .+.-|.+.|.+++|++||.+|++|+
T Consensus 207 ~~t~~~~spn~~~~Aa~d----------------~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG 270 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGD----------------SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG 270 (792)
T ss_pred cceeEEeccccceEEEec----------------cCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc
Confidence 356677888877776662 23333444221 11 3567899999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec------------cCCCe
Q 036953 115 GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD------------FYRPI 182 (792)
Q Consensus 115 ~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~------------h~s~V 182 (792)
..+.+.+|.+.+++ .+-+.--..+|..+.++| |+++.+.+..|+.|.+....+.....++. ..+-.
T Consensus 271 ~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 271 REGVLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred cceEEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 99999999999988 455566788999999999 99999999999999998775543332221 23446
Q ss_pred eEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEec--------CCCCeEEEEEccCCCeEEE
Q 036953 183 ASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLK--------TRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 183 ~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~--------h~~sVtsVafSPdG~~Lla 240 (792)
+.++++|.-+.++..+ .+.|++||+-+.+.+++...... +...++++.++..|.++++
T Consensus 349 t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT 415 (792)
T KOG1963|consen 349 TGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMAT 415 (792)
T ss_pred eeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEE
Confidence 6788899655555555 56699999988776543322221 2235788888888875544
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.4e-08 Score=106.88 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=111.7
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE-------------
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL------------- 130 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v------------- 130 (792)
.+..+.++..|+++|+|+.... ....|.+.|.++.|+|||++|++-+.| ..+||+.+++.++
T Consensus 155 ~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~ 233 (398)
T KOG0771|consen 155 DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFS 233 (398)
T ss_pred CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhh
Confidence 4467888899999999994322 346799999999999999999999999 8999999876111
Q ss_pred -------------EEe---c------------CC-------------CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 131 -------------KVL---S------------GH-------------RRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 131 -------------~~L---~------------gH-------------~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
..+ . -+ ...|++++.+. ++++++.|+.||.|-+++..+
T Consensus 234 ~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~ 312 (398)
T KOG0771|consen 234 SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKS 312 (398)
T ss_pred hceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEece
Confidence 000 0 01 23789999999 999999999999999999999
Q ss_pred CcEEEEec--cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECC
Q 036953 170 SECIGSCD--FYRPIASIAFHAEGELLAVAS-GHKLYIWPYN 208 (792)
Q Consensus 170 g~~v~t~~--h~s~V~sVafSpdG~~LasgS-dd~V~IWDlr 208 (792)
.+.++... |...|+.+.|+||.+++++.+ +.+..+.-+.
T Consensus 313 lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 313 LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 88888774 888999999999999988876 4446665553
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5e-07 Score=107.92 Aligned_cols=211 Identities=13% Similarity=0.169 Sum_probs=137.1
Q ss_pred CCCceEeeecccceeeCCC------CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------
Q 036953 22 RRRARNVSRLLAHREISPK------TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------ 89 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels~~------tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------ 89 (792)
.+..+.||+-...+.+... .+.|+.+.+... +..-.+++++.|+.||+|+-...
T Consensus 1084 ~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe--------------~D~aLlLtas~dGvIRIwk~y~~~~~~~e 1149 (1387)
T KOG1517|consen 1084 DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE--------------QDDALLLTASSDGVIRIWKDYADKWKKPE 1149 (1387)
T ss_pred CcceEEEEecccCceeccccCCCCCCCccceeeeecc--------------cchhheeeeccCceEEEecccccccCCce
Confidence 4566777777666665521 122333322111 23445778888999999974211
Q ss_pred ----------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeC
Q 036953 90 ----------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSL 158 (792)
Q Consensus 90 ----------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~ 158 (792)
.+.+-.+.-.-+.|.....+|++++.-..|+|||+...+++..+. +....|+++.-+...++.++.|-.
T Consensus 1150 LVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1150 LVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred eEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeec
Confidence 122222222445677655566666667899999998877777665 455678888776657899999999
Q ss_pred CCeEEEEECCCCc---EEEEe-ccCCC--eeEEEEcCCCc-EEEEEc-CCeEEEEECCCCCcccCCeEEecC---CCCeE
Q 036953 159 DHEVRLWDANTSE---CIGSC-DFYRP--IASIAFHAEGE-LLAVAS-GHKLYIWPYNNKEEASSPIIVLKT---RRSLR 227 (792)
Q Consensus 159 DgtVrLWDl~tg~---~v~t~-~h~s~--V~sVafSpdG~-~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h---~~sVt 227 (792)
||.|++||.+... .+..+ .|... |..+.+.+.|- .|++++ +|.|++||++...... ......| .+.++
T Consensus 1230 DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~-~~~iv~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET-FLTIVAHWEYGSALT 1308 (1387)
T ss_pred CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc-cceeeeccccCccce
Confidence 9999999998743 33344 46666 99999988774 478877 6669999999853332 2222222 33599
Q ss_pred EEEEccCCCeEEEEEeeCccc
Q 036953 228 AVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 228 sVafSPdG~~LlaS~s~~dLr 248 (792)
++..|++.. ++++++...+.
T Consensus 1309 al~VH~hap-iiAsGs~q~ik 1328 (1387)
T KOG1517|consen 1309 ALTVHEHAP-IIASGSAQLIK 1328 (1387)
T ss_pred eeeeccCCC-eeeecCcceEE
Confidence 999999998 55555433333
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-08 Score=103.68 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=110.9
Q ss_pred cEEEEEeCCCeEEEEeccCC--------------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--cE--EE
Q 036953 70 RGLVSWVEAESLRHLSAKYC--------------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG--NC--LK 131 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~--------------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg--k~--v~ 131 (792)
..++.+-+++.+.+||..++ ....|..+|.++.|.+.-..=++|+.+..+..|+++.. .+ -.
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence 34566678888889988764 23579999999999986666688888888999998643 21 11
Q ss_pred EecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcC-CeEEEEEC
Q 036953 132 VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASG-HKLYIWPY 207 (792)
Q Consensus 132 ~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSd-d~V~IWDl 207 (792)
.+.-..-.|..+.+-| |+++++|++.|+.||+|..++.+++..+. |...|++++|+|+..++|.++. .+|.+|++
T Consensus 246 e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 1222345688899999 99999999999999999999999999985 8899999999999999999994 45999986
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-06 Score=98.79 Aligned_cols=192 Identities=15% Similarity=0.160 Sum_probs=115.5
Q ss_pred cCCCCCCeEEEEEcCCCCEEE---EEECC--CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-----CC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLA---STHGD--HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-----DH 160 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~La---SGS~D--GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-----Dg 160 (792)
+......+.+-+|||||+.++ +...+ ..|.+.++.+++.... ....+.....+|+| |++.|+..+. |.
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di 257 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSP-RKKLLAFISDRYGNPDL 257 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECC-CCCEEEEEECCCCCcce
Confidence 444455677889999998532 33333 3577888887764333 33445556789999 8877776543 23
Q ss_pred eEEEEECCC---CcEEEEecc-CCCeeEEEEcCCCcEEEEEcC--Ce--EEEEECCCCCcccCCeEEecCCCCeEEEEEc
Q 036953 161 EVRLWDANT---SECIGSCDF-YRPIASIAFHAEGELLAVASG--HK--LYIWPYNNKEEASSPIIVLKTRRSLRAVHFH 232 (792)
Q Consensus 161 tVrLWDl~t---g~~v~t~~h-~s~V~sVafSpdG~~LasgSd--d~--V~IWDlrt~~~~~~~~~~~~h~~sVtsVafS 232 (792)
.+.+||+.. ++....... .......+|+|||+.|+..++ +. |+++++...... ...+......+....|+
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~--~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS--PRLLTKKYRNSSCPAWS 335 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc--eEEeccCCCCccceeEC
Confidence 345577765 233333332 234467899999998887662 33 666666432211 12233344567789999
Q ss_pred cCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEc
Q 036953 233 PHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQH 312 (792)
Q Consensus 233 PdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~ 312 (792)
|||+.|+.+..... ...+.+++...+....+... ...+....++|||+.|++.
T Consensus 336 PDG~~Laf~~~~~g--------------------~~~I~v~dl~~g~~~~Lt~~-------~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 336 PDGKKIAFCSVIKG--------------------VRQICVYDLATGRDYQLTTS-------PENKESPSWAIDSLHLVYS 388 (428)
T ss_pred CCCCEEEEEEcCCC--------------------CcEEEEEECCCCCeEEccCC-------CCCccceEECCCCCEEEEE
Confidence 99998887763211 01245555555655544432 2234557889999998844
Q ss_pred c
Q 036953 313 A 313 (792)
Q Consensus 313 ~ 313 (792)
.
T Consensus 389 ~ 389 (428)
T PRK01029 389 A 389 (428)
T ss_pred E
Confidence 3
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=101.19 Aligned_cols=138 Identities=18% Similarity=0.288 Sum_probs=103.1
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-c
Q 036953 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-F 178 (792)
Q Consensus 100 sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h 178 (792)
-+.|||+|+++|+.+.- .+.|-|..+-+..+.|.. -..|.-+.|..+...+|.....|+.|.+|++...+--..++ .
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 45799999999999877 677888877665544442 34567788988344445555688899999999888777774 6
Q ss_pred CCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 179 YRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 179 ~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
..++.+++|+|||+.|...+ +-+|.+|.+.+.+... ....+..+..++|+|||++.+....
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----LPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----ecccccCceeEEECCCCceeeeeec
Confidence 77899999999997776666 5569999999887432 2223445688999999997665544
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.6e-07 Score=93.99 Aligned_cols=136 Identities=11% Similarity=0.142 Sum_probs=107.2
Q ss_pred CCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC--------
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG-------- 135 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g-------- 135 (792)
....++....|+.+..||.++++ +.+|.+.|.++.--.....+++|+.||+++|||+++++++..+..
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR 204 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR 204 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcC
Confidence 45566777789999999999874 689999999999855556799999999999999999999887752
Q ss_pred -CC-CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCC
Q 036953 136 -HR-RTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNN 209 (792)
Q Consensus 136 -H~-~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt 209 (792)
|. ..|.+++. +.+++++|+ ...+.+|.++..+++..|....++..+.|.. +.++.++ .+.|.-|.+..
T Consensus 205 p~~g~wigala~---~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 205 PDWGKWIGALAV---NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cccCceeEEEec---cCceEEecC-CCceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccceeeeeecc
Confidence 22 34566665 457777665 5579999999999999999999999999854 3555555 44599998754
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.8e-07 Score=99.63 Aligned_cols=185 Identities=17% Similarity=0.163 Sum_probs=139.7
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCC-----c--CCCCCCeEEEEEcC-CCCEEEEEECC--CeEEEEECCCCcEEEEecCC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCP-----L--VPPPRSTIAAAFSP-DGRTLASTHGD--HTVKIIDCQTGNCLKVLSGH 136 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~-----L--~gH~~~V~sLafSP-DG~~LaSGS~D--GtVrIWDl~tgk~v~~L~gH 136 (792)
..+..|+++..++.+.+|..+.+- + .....++..|.-++ +...+++|+.. ..++|||+...+.++.-+.-
T Consensus 113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred hcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 356789999999999999987442 1 12235577777777 44566678887 78999999887655543321
Q ss_pred ---------CCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCC-cEEEEec-cCCCeeEEEEcCCCcEEEEEcCC-eE
Q 036953 137 ---------RRTPWVVRFHPLR--SEILASGSLDHEVRLWDANTS-ECIGSCD-FYRPIASIAFHAEGELLAVASGH-KL 202 (792)
Q Consensus 137 ---------~~~VtsVafSP~d--g~lLaSgS~DgtVrLWDl~tg-~~v~t~~-h~s~V~sVafSpdG~~LasgSdd-~V 202 (792)
.-.++++.|-+ + ...|++++.-+.|++||.+.+ +++..|. .+.+++++...|++++++++... .+
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred CCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence 12467789988 5 789999999999999999874 6888886 57899999999999999999844 49
Q ss_pred EEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCce
Q 036953 203 YIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSM 254 (792)
Q Consensus 203 ~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~ 254 (792)
..||+++++... ....+..+.|+++..||..++++.++-+..+|..|...
T Consensus 272 ~~FD~r~~kl~g--~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 272 AKFDLRGGKLLG--CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred heecccCceeec--cccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 999999988543 22455678999999999999655555566677655443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.4e-06 Score=89.71 Aligned_cols=167 Identities=15% Similarity=0.220 Sum_probs=117.2
Q ss_pred CCeEEEEeccCC-------CcCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCC--CcEE--EEecCCCCCcEEE
Q 036953 78 AESLRHLSAKYC-------PLVPPPRSTIAAAFSPDGRTLASTHGD---HTVKIIDCQT--GNCL--KVLSGHRRTPWVV 143 (792)
Q Consensus 78 d~sIrvWd~~t~-------~L~gH~~~V~sLafSPDG~~LaSGS~D---GtVrIWDl~t--gk~v--~~L~gH~~~VtsV 143 (792)
++-|.+|++.+. ++......++-|+|+|+.++|.++..+ |.|.-|.++. |+.. ........+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 556777776532 345677889999999999999998654 6677776654 4422 1112223344789
Q ss_pred EEccCCCCEEEEEeC-CCeEEEEECCC-Cc---EEEEeccCCC----------eeEEEEcCCCcEEEEEc--CCeEEEEE
Q 036953 144 RFHPLRSEILASGSL-DHEVRLWDANT-SE---CIGSCDFYRP----------IASIAFHAEGELLAVAS--GHKLYIWP 206 (792)
Q Consensus 144 afSP~dg~lLaSgS~-DgtVrLWDl~t-g~---~v~t~~h~s~----------V~sVafSpdG~~LasgS--dd~V~IWD 206 (792)
++++ ++++++++.. -+.|.++-+++ |. .+..+.|... +-...+.|++++|++.. .|+|.+|+
T Consensus 95 svd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 9999 8899998874 57899999976 32 3344445444 77889999999999987 67799999
Q ss_pred CCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 207 YNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 207 lrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+..++..............-+.+.|||++++..+.+++.
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~ 212 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN 212 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC
Confidence 997665432222224445567899999999888777644
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-06 Score=99.19 Aligned_cols=181 Identities=13% Similarity=0.098 Sum_probs=111.1
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEE-EECCCe
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLAS-THGDHT 118 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaS-GS~DGt 118 (792)
.+....|+|+++.++.... .++. ..|.+|+..+++ +..........+|+|||+.|+. .+.++.
T Consensus 219 ~~~~p~wSPDG~~La~~s~----~~g~---------~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSF----ENRK---------AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred cccCceECCCCCEEEEEEe----cCCC---------cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCC
Confidence 4567788888876544310 0111 234455544332 2222233457899999998875 455664
Q ss_pred --EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcE
Q 036953 119 --VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DH--EVRLWDANTSECIGSCDFYRPIASIAFHAEGEL 193 (792)
Q Consensus 119 --VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-Dg--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~ 193 (792)
|++||+.+++. ..+..+........|+| |++.|+..+. ++ .|.++|+.+++..............+|+|||++
T Consensus 286 ~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 286 PEIYVVDIATKAL-TRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred eEEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCE
Confidence 77889887764 44555666677899999 7777665543 33 467778887765443222233445789999999
Q ss_pred EEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 194 LAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 194 LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
|+..+. + .|.++|+.+++... .... .......|+|||+.++.+..
T Consensus 364 l~~~~~~~g~~~I~~~dl~~g~~~~----lt~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 364 MIMVNRTNGKFNIARQDLETGAMQV----LTST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred EEEEEecCCceEEEEEECCCCCeEE----ccCC-CCCCCceECCCCCEEEEEEe
Confidence 887652 2 27778887765321 1111 12234579999998877664
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.2e-07 Score=105.26 Aligned_cols=211 Identities=14% Similarity=0.155 Sum_probs=143.5
Q ss_pred CCCceEeeeccccee--eC-------CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC--
Q 036953 22 RRRARNVSRLLAHRE--IS-------PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP-- 90 (792)
Q Consensus 22 ~s~~r~V~~l~~~re--ls-------~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~-- 90 (792)
..+.+-+|++..... .+ .+...+..+.|..+.. . ..+++.+.|+.|..|+.+.-.
T Consensus 263 y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~-------------~-~~f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 263 YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH-------------N-TEFFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC-------------C-CceEEEecCCcEeeeeccccccc
Confidence 566778888876655 22 2333455666655321 1 457788889999999775221
Q ss_pred -----c--C-------CCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC---Cc-----EEEEecCCCCCcEEEEEcc
Q 036953 91 -----L--V-------PPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQT---GN-----CLKVLSGHRRTPWVVRFHP 147 (792)
Q Consensus 91 -----L--~-------gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~t---gk-----~v~~L~gH~~~VtsVafSP 147 (792)
+ . .-...+++++|.+ +...|+.|+.+|.|.--+-.. .. ....+..|.++|+.+.++|
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nP 408 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNP 408 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCC
Confidence 1 1 1223588999999 788999999999987733222 11 1234556889999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECC-CCcEEEEec-cCCCeeEEEEcCCCcEE-EEEc-CCeEEEEECCCCCcccCCeEEecCC
Q 036953 148 LRSEILASGSLDHEVRLWDAN-TSECIGSCD-FYRPIASIAFHAEGELL-AVAS-GHKLYIWPYNNKEEASSPIIVLKTR 223 (792)
Q Consensus 148 ~dg~lLaSgS~DgtVrLWDl~-tg~~v~t~~-h~s~V~sVafSpdG~~L-asgS-dd~V~IWDlrt~~~~~~~~~~~~h~ 223 (792)
...+++++++ |-+|+||.-. ...++..+. +...+.+++|||....+ +++. ++.|.|||+.......... ...+.
T Consensus 409 F~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s-~~~~~ 486 (555)
T KOG1587|consen 409 FYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS-QKVCS 486 (555)
T ss_pred Cccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc-ccccc
Confidence 8888888887 9999999987 667776664 55669999999998654 4444 4559999998776543122 22235
Q ss_pred CCeEEEEEccCCCeEEEEEeeCccc
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
...+.+.|++.|+.++++...+++.
T Consensus 487 ~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 487 PALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred cccceeecCCCCcEEEEecCCCcEE
Confidence 6677888999899666555444333
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-06 Score=104.42 Aligned_cols=187 Identities=12% Similarity=0.140 Sum_probs=130.8
Q ss_pred EeeCCCceEee-------cCCCceeecCCcEEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEEcCCCCE
Q 036953 48 QWVDASKLKTC-------GPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAFSPDGRT 109 (792)
Q Consensus 48 aWspd~~lla~-------G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLafSPDG~~ 109 (792)
.|.+.|.+++. .......+..+-.+++++.|+++|+|+.+.- ++..-...+.++...+.+..
T Consensus 1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 47777766432 1122223345577899999999999998632 12224566888999999999
Q ss_pred EEEEECCCeEEEEECCCCc-------EEEEecCCC-CC-cEEEEEccCCCC-EEEEEeCCCeEEEEECCCCcEEEEec--
Q 036953 110 LASTHGDHTVKIIDCQTGN-------CLKVLSGHR-RT-PWVVRFHPLRSE-ILASGSLDHEVRLWDANTSECIGSCD-- 177 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tgk-------~v~~L~gH~-~~-VtsVafSP~dg~-lLaSgS~DgtVrLWDl~tg~~v~t~~-- 177 (792)
+|.++.||.|.+.+++..+ +.+....+. +. |...+|...... .++.+...+.|..||++.....+.++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999999987521 122222222 22 333344443344 78888889999999999877666664
Q ss_pred -cCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 178 -FYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 178 -h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
..+.|++++.+|.+.+++.|.. |.+-+||++-...+. .....+..+|+.|..+|...
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~--sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL--SWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceee--cccCcccCCcceEEeeccCC
Confidence 4578999999999999999985 459999998776442 22344567888888888655
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-06 Score=94.90 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=95.7
Q ss_pred CEEE-EEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEE
Q 036953 108 RTLA-STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIA 186 (792)
Q Consensus 108 ~~La-SGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVa 186 (792)
++++ +-..++.|.|.|..+.+.+..+.........+.|+| |+++++.++.|+.|.++|+.+++.+.++.......+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence 3444 445689999999999999999986554445578999 99999999999999999999999999998888889999
Q ss_pred EcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEE-ec---CCCCeEEEEEccCCCeEEEEEe
Q 036953 187 FHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIV-LK---TRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 187 fSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~-~~---h~~sVtsVafSPdG~~LlaS~s 243 (792)
+++||++++++. .+.+.++|.++.+..+..... .. ....+..+..+|....++++-.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 999999999887 577999999988755411100 00 2346778888888886666543
|
... |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.2e-07 Score=97.28 Aligned_cols=155 Identities=15% Similarity=0.072 Sum_probs=116.7
Q ss_pred CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC-CCcEEEE-ecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 90 PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQ-TGNCLKV-LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 90 ~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~-tgk~v~~-L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
..++|.-.+..+.|+- +.+.+.+|+.|+.+.-||++ .++.+.. .+-|...|.++.-+|.++.+++||+.|-.|++||
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 5678999999999997 67889999999999999998 4444444 4568899999999987889999999999999999
Q ss_pred CCC-CcEEEEeccCCCeeEEEEcCCC--cEEEEEcCCeEEEEECCCCCccc--CCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 167 ANT-SECIGSCDFYRPIASIAFHAEG--ELLAVASGHKLYIWPYNNKEEAS--SPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 167 l~t-g~~v~t~~h~s~V~sVafSpdG--~~LasgSdd~V~IWDlrt~~~~~--~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
.++ ++++..-...+.|+.+.++|.- +.|+++-.++.+|-+........ .......|.+-++.-+|... ..++++
T Consensus 240 tRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~-~~~lAT 318 (339)
T KOG0280|consen 240 TRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK-DSFLAT 318 (339)
T ss_pred hhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccc-cceeee
Confidence 995 7888877778999999999964 45666666678888886655331 01122335555666667443 335666
Q ss_pred EeeC
Q 036953 242 AEVN 245 (792)
Q Consensus 242 ~s~~ 245 (792)
|+.+
T Consensus 319 CsFY 322 (339)
T KOG0280|consen 319 CSFY 322 (339)
T ss_pred eecc
Confidence 6544
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-06 Score=98.65 Aligned_cols=168 Identities=15% Similarity=0.090 Sum_probs=135.5
Q ss_pred EEEEEeCCCeEEEEeccCCCcC-------CCCCCeEEEEEc--------------------CCCCEEEEEECCCeEEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYCPLV-------PPPRSTIAAAFS--------------------PDGRTLASTHGDHTVKIID 123 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L~-------gH~~~V~sLafS--------------------PDG~~LaSGS~DGtVrIWD 123 (792)
.+.....|+.+|+|+...+++. .-.+...+..|. -|-..++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 3444467888999988766432 123344455553 1334677888899999999
Q ss_pred CCCCcEEEEec--CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcCC
Q 036953 124 CQTGNCLKVLS--GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASGH 200 (792)
Q Consensus 124 l~tgk~v~~L~--gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSdd 200 (792)
...++....+. +|.+.|.++.++. +-..|.|++.|+.+..|+...++.+..+. ....+.+++.+|||+.|++++ +
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-~ 164 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-R 164 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-c
Confidence 99999888876 6999999999998 88999999999999999999999888885 667789999999999999988 4
Q ss_pred eEEEEECCCCCcccCCeEEecCCCCeEEEEEccC-----CCeEEEEEe
Q 036953 201 KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPH-----AAPFVLTAE 243 (792)
Q Consensus 201 ~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPd-----G~~LlaS~s 243 (792)
.|++||+++.+.. ..+.+|.+.|+++.|--+ |.+++++..
T Consensus 165 ~ik~~~~~~kevv---~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 165 QIKVLDIETKEVV---ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA 209 (541)
T ss_pred eEEEEEccCceEE---EEecCCCcceEEEEEEEeccccccceeeeccc
Confidence 5999999998854 367789999999999887 788887665
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-07 Score=110.89 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=114.7
Q ss_pred CcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE-EecCCCCCcEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK-VLSGHRRTPWVV 143 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~-~L~gH~~~VtsV 143 (792)
...+.++.--+.|.+|+.... .+.+|.+.|..+.|+-||.++++.|.|.++++|++.+.+... ..-+|...|+.+
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC 224 (967)
T ss_pred EEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence 345666677788899987633 378999999999999999999999999999999999988665 556899999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-c-cCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCC
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSC-D-FYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKE 211 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~-h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~ 211 (792)
+|.| + .++|++.|.+.++|+.+..+.. .+ + ....+..++.+++...++++++| ++++||+....
T Consensus 225 ~~~~-n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 225 CFLP-N--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred Eecc-c--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 9998 4 9999999999999977654433 44 3 34679999999888888888854 59999986543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.1e-05 Score=81.32 Aligned_cols=216 Identities=13% Similarity=0.085 Sum_probs=141.9
Q ss_pred CCCCceEeeecc-cceeeCC-----CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC-CCeEEEEeccCCCcCC
Q 036953 21 LRRRARNVSRLL-AHREISP-----KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE-AESLRHLSAKYCPLVP 93 (792)
Q Consensus 21 ~~s~~r~V~~l~-~~rels~-----~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~-d~sIrvWd~~t~~L~g 93 (792)
+.++.+.+|++. ...+++. .....+-++|+++.+.+=++.... ..++...+.+.. ++.+...+.... .+
T Consensus 13 ~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~--~~ggvaay~iD~~~G~Lt~ln~~~~--~g 88 (346)
T COG2706 13 RESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG--EEGGVAAYRIDPDDGRLTFLNRQTL--PG 88 (346)
T ss_pred cCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecC--CcCcEEEEEEcCCCCeEEEeecccc--CC
Confidence 458889999887 4444442 223567789999986543321110 123333344442 366666654422 22
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCC-CcEE--EEecCCCCC----------cEEEEEccCCCCEEEEEeC-
Q 036953 94 PPRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQT-GNCL--KVLSGHRRT----------PWVVRFHPLRSEILASGSL- 158 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~-DGtVrIWDl~t-gk~v--~~L~gH~~~----------VtsVafSP~dg~lLaSgS~- 158 (792)
.+.+-++++++|++++++.. .|.|.++-++. |... ..+..|.+. +....|.| ++++|+++..
T Consensus 89 --~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG 165 (346)
T COG2706 89 --SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLG 165 (346)
T ss_pred --CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecC
Confidence 22378999999999999876 58899998865 4321 122236555 88899999 9899998863
Q ss_pred CCeEEEEECCCCcEEEE----eccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCC-cccCCe------EEecCCCC
Q 036953 159 DHEVRLWDANTSECIGS----CDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKE-EASSPI------IVLKTRRS 225 (792)
Q Consensus 159 DgtVrLWDl~tg~~v~t----~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~-~~~~~~------~~~~h~~s 225 (792)
--.|.+|++..++.... +......+-|.|||++++..+.. +++|-+|..+... ...... ..+....+
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 23589999998765433 24556778999999999888877 6779999987741 111011 11224567
Q ss_pred eEEEEEccCCCeEEEEEe
Q 036953 226 LRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 226 VtsVafSPdG~~LlaS~s 243 (792)
..++..++||++|.++..
T Consensus 246 ~aaIhis~dGrFLYasNR 263 (346)
T COG2706 246 AAAIHISPDGRFLYASNR 263 (346)
T ss_pred eeEEEECCCCCEEEEecC
Confidence 889999999998888764
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.5e-07 Score=100.61 Aligned_cols=178 Identities=15% Similarity=0.168 Sum_probs=137.5
Q ss_pred CCceeecCCcEEEEEeCCCeEEEEeccCCCc----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec--
Q 036953 61 SDSSVRDAKRGLVSWVEAESLRHLSAKYCPL----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-- 134 (792)
Q Consensus 61 ~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-- 134 (792)
.+.........|+.+..+..+.-+++..+.+ .-....++++..++...+|++|+.||.|..||..+...+..+.
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 4444444566788888888888888887754 3345789999999988899999999999999998876655553
Q ss_pred ----CCCC-----CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecc--CCCeeEEEEcCC--CcEEEEEcCCe
Q 036953 135 ----GHRR-----TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF--YRPIASIAFHAE--GELLAVASGHK 201 (792)
Q Consensus 135 ----gH~~-----~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h--~s~V~sVafSpd--G~~LasgSdd~ 201 (792)
.|.+ .|+++.|+. ++-.++.|+.+|.|.+||+++.+++..-.| .-+|..+.|.+. ++.+++.....
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~ 295 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRI 295 (703)
T ss_pred cccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHH
Confidence 2333 499999997 799999999999999999999999887765 457889999765 45666665555
Q ss_pred EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 202 LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 202 V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
++|||-.+++.. ........++.+|+-|++-.++++-.
T Consensus 296 ~kiWd~~~Gk~~----asiEpt~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 296 LKIWDECTGKPM----ASIEPTSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred hhhcccccCCce----eeccccCCcCceeeecCCceEEEecC
Confidence 999999998843 34444556999999998885555443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.6e-05 Score=81.83 Aligned_cols=149 Identities=15% Similarity=0.223 Sum_probs=99.3
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCC-CcEEEE---ec----------CCCCCcEEEEEccCCCCEEEEEe-C
Q 036953 95 PRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQT-GNCLKV---LS----------GHRRTPWVVRFHPLRSEILASGS-L 158 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~-DGtVrIWDl~t-gk~v~~---L~----------gH~~~VtsVafSP~dg~lLaSgS-~ 158 (792)
......++++|++++|+++.. +|.|.++++.. +..... +. .......++.|+| ++++++... .
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG 164 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLG 164 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecC
Confidence 345678999999999999875 89999999986 433222 21 1224567899999 888777764 3
Q ss_pred CCeEEEEECCCCc--EEE----EeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEec-------CC
Q 036953 159 DHEVRLWDANTSE--CIG----SCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLK-------TR 223 (792)
Q Consensus 159 DgtVrLWDl~tg~--~v~----t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~-------h~ 223 (792)
...|.+|++.... ... .+........+.|+|+++++++.. ++.|.+|++.............. ..
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 4479999987654 322 234667789999999999988877 56699998872221100111111 12
Q ss_pred CCeEEEEEccCCCeEEEEEee
Q 036953 224 RSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~ 244 (792)
.....++++|||++|+++...
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECT
T ss_pred CCceeEEEecCCCEEEEEecc
Confidence 367899999999999888753
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-06 Score=89.80 Aligned_cols=136 Identities=14% Similarity=0.211 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcE--EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-CCcEEE
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC--LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN-TSECIG 174 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~--v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~-tg~~v~ 174 (792)
..++.|++.+..++++-.+|.+.+-+...... ++..++|.-.++-..|+..+.+++.+|+.|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45788999899999999999999666555443 347889999999999998888999999999999999999 344444
Q ss_pred E--eccCCCeeEEEEcC-CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 175 S--CDFYRPIASIAFHA-EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 175 t--~~h~s~V~sVafSp-dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
. ..|...|.+|.-+| +..+|++|+ |+.|++||.|.-.+ |.....-.+.|..+.++|.-.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k---Pl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK---PLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC---ccccCccccceEEEEecchhh
Confidence 4 24888999998775 467999999 55699999986553 333334457899999999644
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-07 Score=104.54 Aligned_cols=160 Identities=17% Similarity=0.199 Sum_probs=127.1
Q ss_pred EEEEeCCCeEEEEeccCCCcCC--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCC
Q 036953 72 LVSWVEAESLRHLSAKYCPLVP--PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLR 149 (792)
Q Consensus 72 L~S~s~d~sIrvWd~~t~~L~g--H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~d 149 (792)
++.....+-+.+||-....+.. -...|..+.|-|.--.|++++..|.++.-|+.+|+.+..+..-.+.+..++-+| -
T Consensus 184 ~~AVAQK~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~ 262 (545)
T KOG1272|consen 184 FFAVAQKKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-Y 262 (545)
T ss_pred HHHhhhhceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-c
Confidence 3333444455555544222211 124588999999888899999999999999999999999988888999999999 7
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeE
Q 036953 150 SEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLR 227 (792)
Q Consensus 150 g~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVt 227 (792)
...+-+|...|+|.+|.....+++..+ .|.++|.+|+++++|.|+++++ |..++|||++...... ... ......
T Consensus 263 NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~---t~~-tp~~a~ 338 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH---TYR-TPHPAS 338 (545)
T ss_pred cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc---eee-cCCCcc
Confidence 789999999999999999998887665 6999999999999999999999 5669999999887443 222 245677
Q ss_pred EEEEccCCC
Q 036953 228 AVHFHPHAA 236 (792)
Q Consensus 228 sVafSPdG~ 236 (792)
.++||..|-
T Consensus 339 ~ls~Sqkgl 347 (545)
T KOG1272|consen 339 NLSLSQKGL 347 (545)
T ss_pred ccccccccc
Confidence 888988775
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.8e-06 Score=91.68 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=113.7
Q ss_pred EEEeCCCeEEEEeccCCCc----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC
Q 036953 73 VSWVEAESLRHLSAKYCPL----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL 148 (792)
Q Consensus 73 ~S~s~d~sIrvWd~~t~~L----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~ 148 (792)
+.-..++.+.+.|..+.+. ......-..+.|+|||+++++++.|+.|.++|+.+++.+..++.- ....++++++
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~- 87 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP- 87 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE---
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC-
Confidence 3444678888888876542 222222345789999999999999999999999999999998743 4568899999
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCcEEEEec--------cCCCeeEEEEcCCCcEEEEEc-C-CeEEEEECCCCCcccCCe
Q 036953 149 RSEILASGS-LDHEVRLWDANTSECIGSCD--------FYRPIASIAFHAEGELLAVAS-G-HKLYIWPYNNKEEASSPI 217 (792)
Q Consensus 149 dg~lLaSgS-~DgtVrLWDl~tg~~v~t~~--------h~s~V~sVafSpdG~~LasgS-d-d~V~IWDlrt~~~~~~~~ 217 (792)
|+++++.+. .++++.++|.++.++++.+. ..+.+..+..++....+++.- + +.|.+.|+...+... .
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~ 165 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--V 165 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--E
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--e
Confidence 888887665 68999999999999998873 234677888888888666665 3 558888887764322 2
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 218 IVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 218 ~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.............|+|++++++++..
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred eeecccccccccccCcccceeeeccc
Confidence 33445567788999999998877653
|
... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.54 E-value=5e-05 Score=84.06 Aligned_cols=147 Identities=15% Similarity=0.213 Sum_probs=101.3
Q ss_pred CCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCC--c--EEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHG----DHTVKIIDCQTG--N--CLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRLWD 166 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~----DGtVrIWDl~tg--k--~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrLWD 166 (792)
.....++++|++++|++... ++.|..|++... + .+............++++| ++++|+.+. .+++|.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEE
Confidence 44667899999999999877 568999988754 3 2333332345567799999 888888887 589999999
Q ss_pred CCC-CcEEEE---ec-----------cCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCc-cc-CCeEEecCCCCeE
Q 036953 167 ANT-SECIGS---CD-----------FYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEE-AS-SPIIVLKTRRSLR 227 (792)
Q Consensus 167 l~t-g~~v~t---~~-----------h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~-~~-~~~~~~~h~~sVt 227 (792)
+.. +..... +. ......++.|+|+|+++++.. .++|++|++..... .. ...........-+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 987 433222 21 234577999999999998876 56799999977652 21 0112233455678
Q ss_pred EEEEccCCCeEEEEEe
Q 036953 228 AVHFHPHAAPFVLTAE 243 (792)
Q Consensus 228 sVafSPdG~~LlaS~s 243 (792)
.+.|+|+++++++.+.
T Consensus 196 h~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNE 211 (345)
T ss_dssp EEEE-TTSSEEEEEET
T ss_pred EEEEcCCcCEEEEecC
Confidence 9999999998888775
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.8e-05 Score=88.63 Aligned_cols=187 Identities=12% Similarity=0.078 Sum_probs=116.9
Q ss_pred CeEEEEEcCCCCE-EEEEEC---CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEE-EEeCC--CeEEEEECCC
Q 036953 97 STIAAAFSPDGRT-LASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILA-SGSLD--HEVRLWDANT 169 (792)
Q Consensus 97 ~V~sLafSPDG~~-LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLa-SgS~D--gtVrLWDl~t 169 (792)
......|+|||+. ++..+. +..|.++|+.+++...... ..+......|+| |++.++ +.+.+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 6778999999985 665444 3568999998887655443 555667788999 776554 44444 4688889888
Q ss_pred CcEEEEeccCCCeeEEEEcCCCcEEEEEcCC----eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 170 SECIGSCDFYRPIASIAFHAEGELLAVASGH----KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 170 g~~v~t~~h~s~V~sVafSpdG~~LasgSdd----~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
++...............|+|||+.|+..++. .|+++|+.+++... ...... . ...|+|||+.++.+....
T Consensus 267 g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r---lt~~g~-~--~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 267 KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ---VVFHGK-N--NSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe---CccCCC-c--CceECCCCCEEEEEEcCC
Confidence 7754433333334456899999988877743 39999998776432 111111 1 248999999998877432
Q ss_pred ccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEcc
Q 036953 246 DLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHA 313 (792)
Q Consensus 246 dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~ 313 (792)
+-. +.. ....+++.....+..+.+... .......|+|||+.|++..
T Consensus 341 ~~~-------------~~~-~~~~I~v~d~~~g~~~~LT~~--------~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 341 NNE-------------FGK-NTFNLYLISTNSDYIRRLTAN--------GVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred Ccc-------------cCC-CCcEEEEEECCCCCeEECCCC--------CCcCCeEECCCCCEEEEEE
Confidence 100 000 011344445455555444432 1122477999999888443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.9e-06 Score=100.70 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=131.4
Q ss_pred CcEEEEEeCCCeEEEEeccCCCc---CCCCCC-----eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCc
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPL---VPPPRS-----TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP 140 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L---~gH~~~-----V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V 140 (792)
..+++.+...+.+-+|+.+...+ ..+... ..-+.++++.-++++|+.-+.|.+|+....+.-..+.+|.+.|
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 34566666777888888765421 122222 2234456677789999999999999987443333588999999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE--EeccCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCe
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDANTSECIG--SCDFYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPI 217 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~--t~~h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~ 217 (792)
..+.|+. |+.+++++|.|.++|+|++.+++... -|+|...+..++|+|. .+++++.+ ..++|+.+..+..
T Consensus 179 F~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~---- 251 (967)
T KOG0974|consen 179 FSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE---- 251 (967)
T ss_pred EEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh----
Confidence 9999998 99999999999999999999987654 4689999999999998 88888844 5999977655432
Q ss_pred EEecC-CCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 218 IVLKT-RRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 218 ~~~~h-~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
....| .+.|..++.+++...+++.+.+..++.++.
T Consensus 252 ~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 252 VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 23333 567899999887776666666666666554
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-06 Score=91.62 Aligned_cols=143 Identities=17% Similarity=0.226 Sum_probs=104.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE---------------------------------------------
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL--------------------------------------------- 130 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v--------------------------------------------- 130 (792)
-++..+.|+|.+++|+.|+.|+.++|-|--+-+..
T Consensus 211 lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~ 290 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWE 290 (447)
T ss_pred cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccc
Confidence 35889999999999999999998887553211100
Q ss_pred ---------------EEec------CCCCCcEEEEEccCCCCEEEEEeCC--CeEEEEECCCCcEEEEeccCCCeeEEEE
Q 036953 131 ---------------KVLS------GHRRTPWVVRFHPLRSEILASGSLD--HEVRLWDANTSECIGSCDFYRPIASIAF 187 (792)
Q Consensus 131 ---------------~~L~------gH~~~VtsVafSP~dg~lLaSgS~D--gtVrLWDl~tg~~v~t~~h~s~V~sVaf 187 (792)
..++ .-.-.+.-++|++ |..+++|-... +.+-+||++..+.-..+....+|....|
T Consensus 291 ~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~W 369 (447)
T KOG4497|consen 291 ESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEW 369 (447)
T ss_pred cchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEe
Confidence 0011 1122456699999 88888875432 4689999999888777888999999999
Q ss_pred cCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 188 HAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 188 SpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+|....|+.+.+ .++++|......... .....-.|..++|+.+|.+++..++
T Consensus 370 dP~~prL~vctg~srLY~W~psg~~~V~----vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 370 DPGRPRLVVCTGKSRLYFWAPSGPRVVG----VPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred CCCCceEEEEcCCceEEEEcCCCceEEe----cCCCCceeeeEEecCCCcEEEEEcC
Confidence 999987777764 449999887654332 2233478999999999998887765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=94.26 Aligned_cols=202 Identities=13% Similarity=0.171 Sum_probs=132.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-Cc----EEEEecCCC------------CCcEEEEEcc-CCCCEEEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT-GN----CLKVLSGHR------------RTPWVVRFHP-LRSEILASG 156 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t-gk----~v~~L~gH~------------~~VtsVafSP-~dg~lLaSg 156 (792)
.+-|.++.|+.+|.+|++|..+|.|.++.-.. .+ ....++.|. ..|..++|.+ .+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 35588999999999999999999999996432 21 223344443 3678899987 344567777
Q ss_pred eCCCeEEEEECCCCcE-----------------------------------EEEe--ccCCCeeEEEEcCCCcEEEEEcC
Q 036953 157 SLDHEVRLWDANTSEC-----------------------------------IGSC--DFYRPIASIAFHAEGELLAVASG 199 (792)
Q Consensus 157 S~DgtVrLWDl~tg~~-----------------------------------v~t~--~h~s~V~sVafSpdG~~LasgSd 199 (792)
+.|++|++|.+..... .+.+ .|.-.|++++++.|++.++++.+
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 8999999998864211 1112 24556899999999999999988
Q ss_pred CeEEEEECCCCCcccCCeEEecC-----CCCeEEEEEccCCCeEE-EEEeeCccccCCCcee-eecCCCcccCCCCceEE
Q 036953 200 HKLYIWPYNNKEEASSPIIVLKT-----RRSLRAVHFHPHAAPFV-LTAEVNDLDSSDSSMT-RATSPGYLRYPPPAVFV 272 (792)
Q Consensus 200 d~V~IWDlrt~~~~~~~~~~~~h-----~~sVtsVafSPdG~~Ll-aS~s~~dLrs~d~~~~-l~t~sg~~~~p~~~~~l 272 (792)
=+|.+|++..........-+..+ ..-|++..|||..-.++ .+++-..|+.-|.+.. +.. .....+
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd--------~hsKlf 256 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD--------AHSKLF 256 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc--------chhhhh
Confidence 88999999766543212222222 34588999999765544 4555555554443311 110 011122
Q ss_pred EEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 273 ANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 273 ~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.-..++..+.++.+ -...|.|+.|+.+||+++
T Consensus 257 Eepedp~~rsffse------iIsSISDvKFs~sGryil 288 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSE------IISSISDVKFSHSGRYIL 288 (433)
T ss_pred ccccCCcchhhHHH------HhhhhhceEEccCCcEEE
Confidence 22234444555543 567899999999999999
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.4e-06 Score=92.38 Aligned_cols=175 Identities=15% Similarity=0.253 Sum_probs=120.5
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecc
Q 036953 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF 178 (792)
Q Consensus 99 ~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h 178 (792)
..|+++.-..-|+.++....|+-+++..|..+.-|.-..+.++++..++ -..+|++|+.||.|..||.+....+.++..
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeec
Confidence 4555554333455555555788889999999888888889999999999 778999999999999999999877766632
Q ss_pred C------------CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC--CCCeEEEEEccCC-CeEEEEE
Q 036953 179 Y------------RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT--RRSLRAVHFHPHA-APFVLTA 242 (792)
Q Consensus 179 ~------------s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h--~~sVtsVafSPdG-~~LlaS~ 242 (792)
. ..|+++.|+.+|-.+++|. .+.++|||++..+. .....| .-+|..+.|.+.+ ..-++++
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p----l~~kdh~~e~pi~~l~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP----LLVKDHGYELPIKKLDWQDTDQQNKVVSM 291 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc----eeecccCCccceeeecccccCCCceEEec
Confidence 2 2389999999999999998 55699999999884 334444 6689999997762 2244444
Q ss_pred e-----eCccccCCCceeeec---CCCcccCCCCceEEEEecCC
Q 036953 243 E-----VNDLDSSDSSMTRAT---SPGYLRYPPPAVFVANAQSG 278 (792)
Q Consensus 243 s-----~~dLrs~d~~~~l~t---~sg~~~~p~~~~~l~~~ssG 278 (792)
. +|+-..+.....+.. ......+|...++|....++
T Consensus 292 Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 292 DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence 4 444333333322221 11233345555555554443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-05 Score=94.61 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=104.1
Q ss_pred CCeEEEEeccCC--------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--C--cEEEEecCCCCCcEEEEE
Q 036953 78 AESLRHLSAKYC--------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT--G--NCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 78 d~sIrvWd~~t~--------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t--g--k~v~~L~gH~~~VtsVaf 145 (792)
+..+.+|...+. .-..|...+++.+++|+++++++|..||.|.+|.--. + .....+.=|...|++++|
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f 259 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF 259 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence 444556665542 1235777789999999999999999999999996332 1 234556678899999999
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCC
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNK 210 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~ 210 (792)
++ ++.+|+||+..+-+-+|.+.+++....-+-.++|..+.++||+.+.++.. |+.|++....+.
T Consensus 260 S~-~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 260 SS-DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred ec-CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 99 99999999999999999999998443336889999999999998777766 666888876443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00013 Score=83.28 Aligned_cols=155 Identities=10% Similarity=0.044 Sum_probs=97.7
Q ss_pred eEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEE-C--CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTH-G--DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS-~--DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.+++..+++ +....+......|+|||+.|+... . +..|.++|+.+++. ..+..+........|+| |++.|
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SP-DG~~I 291 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVE-DDKRI 291 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECC-CCCEE
Confidence 34455554432 223345566788999999876543 2 35688889887764 44444444345578999 77766
Q ss_pred EEEe-CCC--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-C-------C--eEEEEECCCCCcccCCeEEe
Q 036953 154 ASGS-LDH--EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-G-------H--KLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 154 aSgS-~Dg--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-d-------d--~V~IWDlrt~~~~~~~~~~~ 220 (792)
+-.+ ..+ .|.+.|+.+++.......... ...|+|||++|+... . + .|++.|+.+++... +.
T Consensus 292 ~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~----LT 365 (419)
T PRK04043 292 VFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR----LT 365 (419)
T ss_pred EEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE----CC
Confidence 6555 333 588889988776444322222 248999999887765 2 2 48888987775321 22
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.. .......|+|||+.++.+..
T Consensus 366 ~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 366 AN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CC-CCcCCeEECCCCCEEEEEEc
Confidence 22 22335889999998887754
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.3e-05 Score=82.15 Aligned_cols=148 Identities=15% Similarity=0.187 Sum_probs=102.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCcEEEEecCCCCCcEEEEEccC-CCCEEEE-EeCCCeEEEEECCCC
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ-TGNCLKVLSGHRRTPWVVRFHPL-RSEILAS-GSLDHEVRLWDANTS 170 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~-tgk~v~~L~gH~~~VtsVafSP~-dg~lLaS-gS~DgtVrLWDl~tg 170 (792)
....|.++.+.++ +|++.- .+.|+||... .-+.++.+..-.++=--++..|. +..+|+. |-.-|.|.+-|+...
T Consensus 93 f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 3567888888754 555544 5689999987 44556666532222112334442 3334443 346689999999875
Q ss_pred cE---EEEeccCCCeeEEEEcCCCcEEEEEc-CCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 171 EC---IGSCDFYRPIASIAFHAEGELLAVAS-GHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 171 ~~---v~t~~h~s~V~sVafSpdG~~LasgS-dd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+. .....|.+.|.+++.+.+|.++|++| .++ |+|||..+++...+ ...-.....|++++|+|++.+|++++.-.
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E-~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE-LRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee-eecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 54 44457999999999999999999999 566 99999999986652 11122356799999999999888777633
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.2e-06 Score=93.66 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=121.6
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccC-CCCEEEEEeCCCeEEEEEC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPL-RSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~-dg~lLaSgS~DgtVrLWDl 167 (792)
+|.+|.+.|+.+.|+..|..|++|+.|..|.+||...++.+..|. +|...|....|-|+ +...+++++.||.|++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 678999999999999999999999999999999999888776665 79988888888873 4567999999999999876
Q ss_pred CC-CcEEEE---eccCCCeeEEEEcCCCc-EEEEEcCCe-EEEEECCCCCcccCCeEEecCCC---CeEEEEEccCCCeE
Q 036953 168 NT-SECIGS---CDFYRPIASIAFHAEGE-LLAVASGHK-LYIWPYNNKEEASSPIIVLKTRR---SLRAVHFHPHAAPF 238 (792)
Q Consensus 168 ~t-g~~v~t---~~h~s~V~sVafSpdG~-~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~---sVtsVafSPdG~~L 238 (792)
.. +.+..+ ..|.++|..++.-|+.. .|.+++.+. +.-+|++.............+.. ..+.++.+|-..+.
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 54 333322 36899999999999874 566666554 88899987654331111112222 57889999988765
Q ss_pred EEEEe-eCccccCCCc
Q 036953 239 VLTAE-VNDLDSSDSS 253 (792)
Q Consensus 239 laS~s-~~dLrs~d~~ 253 (792)
++.++ +.-.+.++.+
T Consensus 297 faVgG~dqf~RvYD~R 312 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQR 312 (559)
T ss_pred cccCChhhhhhhhccc
Confidence 55554 4444454443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.3e-05 Score=94.12 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=108.9
Q ss_pred CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCe
Q 036953 90 PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG-------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161 (792)
Q Consensus 90 ~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg-------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt 161 (792)
.+..|...|..++.++ ++.+|++|+.||+||+||+..- +...++.-....+..+.+.+ .++.+|.++.||.
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKDGS 1121 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCCCe
Confidence 5678888999999888 5599999999999999998631 22333433567888888888 8899999999999
Q ss_pred EEEEECCCC-------cEEEEe--ccCCCeeEE-EEcCC-Cc-EEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEE
Q 036953 162 VRLWDANTS-------ECIGSC--DFYRPIASI-AFHAE-GE-LLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRA 228 (792)
Q Consensus 162 VrLWDl~tg-------~~v~t~--~h~s~V~sV-afSpd-G~-~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVts 228 (792)
|++.++.-. .+.... ...+.+.++ +|... +. .|+.+.+ ++|..||+++..... ........+.|++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w-~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW-RLKNQLRHGLVTS 1200 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH-hhhcCccccceeE
Confidence 999988752 111111 233344333 33322 23 5555554 559999998876543 1122224578999
Q ss_pred EEEccCCCeEEEEEe-----eCcccc
Q 036953 229 VHFHPHAAPFVLTAE-----VNDLDS 249 (792)
Q Consensus 229 VafSPdG~~LlaS~s-----~~dLrs 249 (792)
++.+|.+..++.+.. .||+|.
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEeec
Confidence 999999998887666 555553
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.9e-06 Score=88.82 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=105.5
Q ss_pred CcEEEEEeCCCeEEEEeccCC-----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE-ecCCCCCcEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC-----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV-LSGHRRTPWV 142 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~-----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~-L~gH~~~Vts 142 (792)
...++++..-+.+|+||.+.+ ++.--..++.++...|+++++++|..-+.+..||++.++.... |++-.+.|++
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS 295 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence 567888889999999999865 2334466789999999999999999999999999999987766 8899999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCC
Q 036953 143 VRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAE 190 (792)
Q Consensus 143 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpd 190 (792)
+..+| ...++++|+.|..|||+|+.+.+++......+.++++.+.++
T Consensus 296 ih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 296 IHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred EEEcC-CCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 99999 888999999999999999999888877777778888877654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.8e-05 Score=88.85 Aligned_cols=196 Identities=13% Similarity=0.136 Sum_probs=140.3
Q ss_pred eeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC-----cCCCCCCeEEEEEcC--CCC
Q 036953 36 EISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP-----LVPPPRSTIAAAFSP--DGR 108 (792)
Q Consensus 36 els~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~-----L~gH~~~V~sLafSP--DG~ 108 (792)
++..+...++.+.|...+.. +.++++|..+.+|+-.... ..+|...|....|-| +.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~----------------l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDV----------------LASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred cccCCCCccceeeecccCce----------------eeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCc
Confidence 34455555666666555554 4455677777777765442 257999999999999 667
Q ss_pred EEEEEECCCeEEEEECCC-CcE--EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---c-cCC-
Q 036953 109 TLASTHGDHTVKIIDCQT-GNC--LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC---D-FYR- 180 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~t-gk~--v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~---~-h~s- 180 (792)
.+++++.||.|++=.+.. +.+ ...+..|.+.|..++.-|+....|.|++.|+.++-+|++...+...+ . ...
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 899999999999887643 322 34566799999999999988899999999999999999987665444 1 223
Q ss_pred --CeeEEEEcCCCc-EEEEEcCCe-EEEEECCCCCccc--------CCeEEe-cCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 181 --PIASIAFHAEGE-LLAVASGHK-LYIWPYNNKEEAS--------SPIIVL-KTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 181 --~V~sVafSpdG~-~LasgSdd~-V~IWDlrt~~~~~--------~~~~~~-~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
....++.+|... .+++++.+. +++||.++-.... .+.... .....|++++|+.++.-++++-.+.++
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 467889898775 788888666 9999997654321 011111 234569999999888878877765444
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.2e-05 Score=87.55 Aligned_cols=189 Identities=12% Similarity=0.079 Sum_probs=136.9
Q ss_pred CCCCCCceEeeecccceeeC---CC---CceeeeEEeeC--C-Cce-EeecCCCceeecCCcEEEEEeCCCeEEEEeccC
Q 036953 19 NHLRRRARNVSRLLAHREIS---PK---TKYVPKRQWVD--A-SKL-KTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY 88 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels---~~---tk~V~s~aWsp--d-~~l-la~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t 88 (792)
.+...+...+|+....+... +. +.......|.= + ..+ .-+-..+.-...+...++-+...+.+.+++...
T Consensus 10 ~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~ 89 (541)
T KOG4547|consen 10 LSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAG 89 (541)
T ss_pred ecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecC
Confidence 45577888999887765443 21 12344555640 0 000 000000111112333455556677777777765
Q ss_pred CCc------CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeE
Q 036953 89 CPL------VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162 (792)
Q Consensus 89 ~~L------~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtV 162 (792)
+.+ .+|.+.|+++.++.+...|.+++.|+.+..|+..+.+.++.+++.+..+.+++.+| |+..+++++ ++|
T Consensus 90 g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~i 166 (541)
T KOG4547|consen 90 GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQI 166 (541)
T ss_pred CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceE
Confidence 532 47999999999999999999999999999999999999999999999999999999 899998875 679
Q ss_pred EEEECCCCcEEEEe-ccCCCeeEEEEcCC-----CcEEEEEcC--CeEEEEECCCC
Q 036953 163 RLWDANTSECIGSC-DFYRPIASIAFHAE-----GELLAVASG--HKLYIWPYNNK 210 (792)
Q Consensus 163 rLWDl~tg~~v~t~-~h~s~V~sVafSpd-----G~~LasgSd--d~V~IWDlrt~ 210 (792)
++||+++++.+..| +|.++|+++.|--+ |+++.++.. ..+.+|-+...
T Consensus 167 k~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 167 KVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 99999999999999 58999999999876 777777663 33888877653
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.7e-06 Score=89.94 Aligned_cols=151 Identities=20% Similarity=0.323 Sum_probs=102.4
Q ss_pred CCeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEe-cCCCCCcEEEEEccCCCCEE
Q 036953 78 AESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVL-SGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 78 d~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L-~gH~~~VtsVafSP~dg~lL 153 (792)
...+.+|+...+ .+.||-.-++.++|+||+++|+++..|..|+|-....-..+..| -||+..|..++..+ +..|
T Consensus 131 ~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~L 208 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLL 208 (390)
T ss_pred ceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--Ccee
Confidence 344555654422 45789999999999999999999999999999887655445444 37999999999986 5679
Q ss_pred EEEeCCCeEEEEECCCCcEEEEeccCC---Cee----------EEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEE
Q 036953 154 ASGSLDHEVRLWDANTSECIGSCDFYR---PIA----------SIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIV 219 (792)
Q Consensus 154 aSgS~DgtVrLWDl~tg~~v~t~~h~s---~V~----------sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~ 219 (792)
+|+|.|++|++||+.+++++.++...+ .+. .++|......++..+++. ++++.....+... ..
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L~t~dl~s~~~~i~~lap~~f~~~~i~i~e~~~~~~~~~~~~p~~if~~~a~~~~~---v~ 285 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLLDTCDLSSLVIPILPLAPPKFIPTIIAIFESSRLVWLLCDGTPVVIFGAEALPTSL---VP 285 (390)
T ss_pred eecCCCCcEEEEecccCCcccccchhHhhhhccccCchhhhhhHHHHHHhhhhhheecCCCeEEEEeecCCCcee---EE
Confidence 999999999999999999887764222 221 122222233444444444 7777766655332 22
Q ss_pred ecCCCCeEEEEEcc
Q 036953 220 LKTRRSLRAVHFHP 233 (792)
Q Consensus 220 ~~h~~sVtsVafSP 233 (792)
......+.++++-.
T Consensus 286 l~~~~qv~d~a~~e 299 (390)
T KOG3914|consen 286 LVSEVQVWDLALLE 299 (390)
T ss_pred EEecccceeeeeee
Confidence 22333355555543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00087 Score=75.44 Aligned_cols=175 Identities=15% Similarity=0.168 Sum_probs=123.3
Q ss_pred EcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCC-eEEEEECCCCcEEEEeccCC
Q 036953 103 FSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH-EVRLWDANTSECIGSCDFYR 180 (792)
Q Consensus 103 fSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg-tVrLWDl~tg~~v~t~~h~s 180 (792)
|++ +|.+++..|. |+..|.+...+-.++ -+|.+.|.-..+.- +++-++.|..|+ .+-++|.++++.......-+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCcc
Confidence 444 7888887775 567777765554332 25778888888887 777899999999 89999999988777777788
Q ss_pred CeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecC
Q 036953 181 PIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATS 259 (792)
Q Consensus 181 ~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~ 259 (792)
.|.++..+++|++++++.+.- |.++|+.++.... ......+-|+...|||++++++-+--
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~---idkS~~~lItdf~~~~nsr~iAYafP---------------- 463 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKSEYGLITDFDWHPNSRWIAYAFP---------------- 463 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE---ecccccceeEEEEEcCCceeEEEecC----------------
Confidence 899999999999999998654 8888998887321 22334567999999999997765432
Q ss_pred CCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 260 PGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 260 sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.|+ -...+.+.+...++.....++ ...=.+.+|.|||++|+
T Consensus 464 ~gy---~tq~Iklydm~~~Kiy~vTT~-------ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 464 EGY---YTQSIKLYDMDGGKIYDVTTP-------TAYDFSPAFDPDGRYLY 504 (668)
T ss_pred cce---eeeeEEEEecCCCeEEEecCC-------cccccCcccCCCCcEEE
Confidence 111 123455555554444333321 11223478999999887
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.8e-05 Score=84.29 Aligned_cols=202 Identities=14% Similarity=0.191 Sum_probs=128.3
Q ss_pred CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEE-EEeccCC------Cc-----CCCCCCeEEEEEcCCC-
Q 036953 41 TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLR-HLSAKYC------PL-----VPPPRSTIAAAFSPDG- 107 (792)
Q Consensus 41 tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIr-vWd~~t~------~L-----~gH~~~V~sLafSPDG- 107 (792)
...+.++.|+..|.++++| +.+++++-...++..+ .++..+. .+ ..-...|+.+.|.+++
T Consensus 25 adiis~vef~~~Ge~LatG-------dkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATG-------DKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN 97 (433)
T ss_pred hcceeeEEeecccceEeec-------CCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence 3467899999999999999 5555655554444332 2222111 11 1223568899999854
Q ss_pred -CEEEEEECCCeEEEEECCCCcE-----------------------------------EEEe-cCCCCCcEEEEEccCCC
Q 036953 108 -RTLASTHGDHTVKIIDCQTGNC-----------------------------------LKVL-SGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 108 -~~LaSGS~DGtVrIWDl~tgk~-----------------------------------v~~L-~gH~~~VtsVafSP~dg 150 (792)
..++....|++|++|.+..... .+.+ .+|.--|.++.++. |.
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~ 176 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DK 176 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-cc
Confidence 5778888999999998753211 0111 25777889999998 87
Q ss_pred CEEEEEeCCCeEEEEECCCCc-EEEEec--------cCCCeeEEEEcCCCc-E-EEEEcCCeEEEEECCCCCccc-----
Q 036953 151 EILASGSLDHEVRLWDANTSE-CIGSCD--------FYRPIASIAFHAEGE-L-LAVASGHKLYIWPYNNKEEAS----- 214 (792)
Q Consensus 151 ~lLaSgS~DgtVrLWDl~tg~-~v~t~~--------h~s~V~sVafSpdG~-~-LasgSdd~V~IWDlrt~~~~~----- 214 (792)
..++++ .|=.|.+|++.--. +....+ ...-|++..|||... . ..+++.|.|++.|++....-.
T Consensus 177 Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 877775 57789999997532 222221 223578899999763 3 344456779999998432110
Q ss_pred --CC---e---EEecCCCCeEEEEEccCCCeEEE----EEeeCccccCC
Q 036953 215 --SP---I---IVLKTRRSLRAVHFHPHAAPFVL----TAEVNDLDSSD 251 (792)
Q Consensus 215 --~~---~---~~~~h~~sVtsVafSPdG~~Lla----S~s~~dLrs~d 251 (792)
++ . .+..--..|..+.|+++|+++++ +-.+||+....
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~ 304 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA 304 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC
Confidence 00 0 01112357899999999998875 44466665433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.8e-05 Score=87.06 Aligned_cols=251 Identities=11% Similarity=0.091 Sum_probs=151.2
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC---CCeEEEE----ecc-CCCcCCCCCCeEEEEEcCCCCEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE---AESLRHL----SAK-YCPLVPPPRSTIAAAFSPDGRTL 110 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~---d~sIrvW----d~~-t~~L~gH~~~V~sLafSPDG~~L 110 (792)
|......+.+|.....+++||+.++.+ +++-... |...+-. +.. .+++.||...|.-+.|+.+.++|
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlL-----KVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLL-----KVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred CCCceEEEEEEcccCCeEEecccccee-----EEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 667788999999999999998533222 3332221 1111110 001 22578999999999999999999
Q ss_pred EEEECCCeEEEEECCCCcEEE--EecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEE
Q 036953 111 ASTHGDHTVKIIDCQTGNCLK--VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAF 187 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~v~--~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVaf 187 (792)
-+...+|.|.+|-+-.+.-.. .-...+.-|.+++|+. ++..++..-.||.|.+=.+...+ ++... .......+.|
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLW 164 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce-ecchhcchheccceee
Confidence 999999999999987664211 1122456788999999 99999999999988877665432 22211 2223457899
Q ss_pred cCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCC-cccC
Q 036953 188 HAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPG-YLRY 265 (792)
Q Consensus 188 SpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg-~~~~ 265 (792)
++|.+.+..+- ++.+++||....-..+... ...-.++. .|+.-+..+..-. -..| +...
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~---~c~Vn~tg-~~s~~~~kia~i~---------------w~~g~~~~v 225 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEK---DCEVNGTG-IFSNFPTKIAEIE---------------WNTGPYQPV 225 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhh---ceEEeeee-eecCCCcccccee---------------eccCccccC
Confidence 99998777666 5569999986543222000 00011111 1222222211111 0111 1111
Q ss_pred CC-CceEEEEecCCCE---EEEeeccCcccCCCceEEEeEECCCCcEEEEcccc
Q 036953 266 PP-PAVFVANAQSGDH---VSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASR 315 (792)
Q Consensus 266 p~-~~~~l~~~ssG~~---~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~ 315 (792)
+| ...+......|.+ ++.....+++-+....|..+.++++|..+++.+..
T Consensus 226 ~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 226 PPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCc
Confidence 22 2333444455655 44444555555677889999999999999855543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00035 Score=79.85 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=55.7
Q ss_pred eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC---CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe
Q 036953 161 EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG---HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP 237 (792)
Q Consensus 161 tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd---d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~ 237 (792)
++++.++....+...+...++|.++.|+++++-|+++.+ .++.|||++..- ...-..++=+++-|+|.|+.
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~------v~df~egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP------VFDFPEGPRNTAFFNPHGNI 325 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE------eEeCCCCCccceEECCCCCE
Confidence 456666664455555567889999999999998888764 349999996643 23334566788999999997
Q ss_pred EEEEE
Q 036953 238 FVLTA 242 (792)
Q Consensus 238 LlaS~ 242 (792)
+++++
T Consensus 326 i~lAG 330 (566)
T KOG2315|consen 326 ILLAG 330 (566)
T ss_pred EEEee
Confidence 76665
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-05 Score=92.06 Aligned_cols=135 Identities=18% Similarity=0.297 Sum_probs=100.7
Q ss_pred CeEEEEEcCCC---CEEEEEECCCeEEEEECCC---CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 97 STIAAAFSPDG---RTLASTHGDHTVKIIDCQT---GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 97 ~V~sLafSPDG---~~LaSGS~DGtVrIWDl~t---gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
.|-.+.|++.. ..+++.+.. .-.+|++.. ......+.+|...|+++.|+|++...+++|+.|..|..||++..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hhcceecccCCCCceeEEecCcc-hhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 47778888832 345555544 455899853 34556778999999999999999999999999999999999984
Q ss_pred -cEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccC
Q 036953 171 -ECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPH 234 (792)
Q Consensus 171 -~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPd 234 (792)
.++..+ ........++|+-....+.+.+.++ |++||++.+.... .....|...|+.++|+.-
T Consensus 148 ~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl--~s~K~~vs~vn~~~fnr~ 212 (1081)
T KOG0309|consen 148 HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL--CSLKGHVSSVNSIDFNRF 212 (1081)
T ss_pred CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcce--EEecccceeeehHHHhhh
Confidence 456555 4667788999997665555555444 9999999887542 345557778888888764
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00022 Score=80.00 Aligned_cols=145 Identities=13% Similarity=0.100 Sum_probs=115.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDH-TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DG-tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
.+|...|.-..+.-+++.++.|..|| .+-|+|..+++ ++.+.+.-+.|..+..++ ++++++.+....++.+.|+.++
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCC
Confidence 46778899999988888999999999 89999998776 556666778899999999 9999999988889999999998
Q ss_pred cEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CC----eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 171 ECIGSC-DFYRPIASIAFHAEGELLAVAS-GH----KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 171 ~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd----~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+....- ...+-|+.+.|||++++||-+- ++ .|+++|+...+... .......-.+-+|.|++++|..-+
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~----vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD----VTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE----ecCCcccccCcccCCCCcEEEEEe
Confidence 765443 3567799999999999999886 32 39999998877322 222233445778999999886544
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.2e-06 Score=60.58 Aligned_cols=39 Identities=36% Similarity=0.805 Sum_probs=36.8
Q ss_pred CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 127 GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 127 gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
++++.++.+|.+.|++++|+| ++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 367889999999999999999 899999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.3e-05 Score=84.42 Aligned_cols=131 Identities=18% Similarity=0.324 Sum_probs=97.8
Q ss_pred CCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC---CeEEEEECCC
Q 036953 95 PRSTIAAAFSPDGRTLASTH--GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD---HEVRLWDANT 169 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS--~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D---gtVrLWDl~t 169 (792)
.++|.++.|+++++.|+++. .=-.+.|||++ ++.+..|. .++=.++-|+| .+++++.++-+ |.+-+||+.+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEEEEeecCCCCCceEEEeccc
Confidence 67899999999998887654 34678999975 66666664 45567799999 99999988854 7899999999
Q ss_pred CcEEEEeccCCCeeEEEEcCCCcEEEEEc-------CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC
Q 036953 170 SECIGSCDFYRPIASIAFHAEGELLAVAS-------GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 170 g~~v~t~~h~s~V~sVafSpdG~~LasgS-------dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG 235 (792)
.+++..+.... -+-+.|+|||++|+++. |++++||++.....-. ..-.+.+..+.|-|-.
T Consensus 346 ~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~-----~~f~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 346 RKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE-----KMFKSELLQVEWRPFN 412 (566)
T ss_pred hhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh-----hhhhHhHhheeeeecC
Confidence 88888776433 34578999999999886 4569999985543211 1112257788887643
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0034 Score=70.16 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=58.2
Q ss_pred EcCCCCEEEEEEC----------CCeEEEEECCCCcEEEEecCC-------CCCcEEEEEccCCCCEEEEEe-C-CCeEE
Q 036953 103 FSPDGRTLASTHG----------DHTVKIIDCQTGNCLKVLSGH-------RRTPWVVRFHPLRSEILASGS-L-DHEVR 163 (792)
Q Consensus 103 fSPDG~~LaSGS~----------DGtVrIWDl~tgk~v~~L~gH-------~~~VtsVafSP~dg~lLaSgS-~-DgtVr 163 (792)
+|||++.|+++.. +..|.+||+.+.+.+..+.-- ......++++| |+++|+... . +..|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 9999999988766 689999999999999888621 22334789999 888888765 3 78999
Q ss_pred EEECCCCcEEEEe
Q 036953 164 LWDANTSECIGSC 176 (792)
Q Consensus 164 LWDl~tg~~v~t~ 176 (792)
+.|+.+++.+..+
T Consensus 132 VvD~~~~kvv~ei 144 (352)
T TIGR02658 132 VVDLEGKAFVRMM 144 (352)
T ss_pred EEECCCCcEEEEE
Confidence 9999988776654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.1e-05 Score=83.04 Aligned_cols=113 Identities=16% Similarity=0.251 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 98 TIAAAFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
-+++.|..+......+.. ...+.+|....+.+. .+-||-..++.++|+| |+++++++..|..||+-....--.+.
T Consensus 110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Ie 187 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIE 187 (390)
T ss_pred cceeeeeeccceEEEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchh
Confidence 445555554555544443 445555555544443 3448999999999999 88999999999999998887766666
Q ss_pred Ee--ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcc
Q 036953 175 SC--DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEA 213 (792)
Q Consensus 175 t~--~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~ 213 (792)
.| +|...|..++.-++.. |++++ |++|++||+++++..
T Consensus 188 sfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 188 SFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hhccccHhheeeeeeccCce-eeecCCCCcEEEEecccCCcc
Confidence 65 6889999999876655 55555 666999999999865
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00038 Score=73.70 Aligned_cols=174 Identities=10% Similarity=0.014 Sum_probs=118.4
Q ss_pred CcEEEEEeCCCeEEEEeccCC--CcCCCCCC--eEEEEEcCCCCEEEEEECCCeEEEEECCCCc--EEE-EecCCCCCcE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC--PLVPPPRS--TIAAAFSPDGRTLASTHGDHTVKIIDCQTGN--CLK-VLSGHRRTPW 141 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~--~L~gH~~~--V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk--~v~-~L~gH~~~Vt 141 (792)
.-.+..++.|.++++.++... ...-|... +..+++++|++++++.+....|..|.+.... .+. .....+..-.
T Consensus 128 ~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF 207 (344)
T KOG4532|consen 128 KFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF 207 (344)
T ss_pred ccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence 445666777888888776543 23334443 8899999999999999999999999886532 223 2223344456
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-----ccCCCeeEEEEcCCCc--EEEEEc-CCeEEEEECCCCCc
Q 036953 142 VVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSC-----DFYRPIASIAFHAEGE--LLAVAS-GHKLYIWPYNNKEE 212 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~-----~h~s~V~sVafSpdG~--~LasgS-dd~V~IWDlrt~~~ 212 (792)
+..|+. ....+|++..||++.+||++.. .+.... .|.+.+..+.|++.|. +|+..- -..+++.|+++...
T Consensus 208 ~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 208 YNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred eeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 788998 7889999999999999999974 333332 4789999999998773 344333 34599999999875
Q ss_pred ccCCe----EEecCC-CCeEEEEEccCCCeEEEEEe
Q 036953 213 ASSPI----IVLKTR-RSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 213 ~~~~~----~~~~h~-~sVtsVafSPdG~~LlaS~s 243 (792)
.+... ....|. ..|..-.|+.++..+.+...
T Consensus 287 ~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 287 HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred eeEEecCccccccccccccccccccCCCcccccccc
Confidence 43111 111122 33677777777665555444
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.8e-06 Score=91.82 Aligned_cols=152 Identities=14% Similarity=0.182 Sum_probs=109.5
Q ss_pred CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-------CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCe
Q 036953 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT-------GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t-------gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt 161 (792)
+.+.||...|..++--.+.+-+++++.|++|++|.++. ..|..+++.|+.+|.++.|-. +.+++++| |+.
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGG 805 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCc
Confidence 35678999998887766888999999999999999863 236788899999999999988 77777765 899
Q ss_pred EEEEECCCCcEEEEec---cCCCeeEEEEcC--CCcEEEEEc--CCeEEEEECCCCCcccCCeEE--ecCCCCeEEEEEc
Q 036953 162 VRLWDANTSECIGSCD---FYRPIASIAFHA--EGELLAVAS--GHKLYIWPYNNKEEASSPIIV--LKTRRSLRAVHFH 232 (792)
Q Consensus 162 VrLWDl~tg~~v~t~~---h~s~V~sVafSp--dG~~LasgS--dd~V~IWDlrt~~~~~~~~~~--~~h~~sVtsVafS 232 (792)
|++||.--++++.... ..+.+..+.--+ +..++..++ ..+|+++|.+..+...+.... ......+++++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999998887776442 222333333222 444555543 455999999887754322222 2234678899999
Q ss_pred cCCCeEEEEEe
Q 036953 233 PHAAPFVLTAE 243 (792)
Q Consensus 233 PdG~~LlaS~s 243 (792)
+.|+.+++.-+
T Consensus 886 ~~GN~lAa~LS 896 (1034)
T KOG4190|consen 886 DKGNKLAAALS 896 (1034)
T ss_pred cCcchhhHHhc
Confidence 99998876544
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.6e-05 Score=83.47 Aligned_cols=139 Identities=11% Similarity=0.157 Sum_probs=100.9
Q ss_pred EEeCCCeEEEEeccCC--CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----cEEEEecCCCCCcEEEEEc
Q 036953 74 SWVEAESLRHLSAKYC--PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG-----NCLKVLSGHRRTPWVVRFH 146 (792)
Q Consensus 74 S~s~d~sIrvWd~~t~--~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg-----k~v~~L~gH~~~VtsVafS 146 (792)
+.+.+..+-+.+..++ +....+..|.++.|.-.++.+..|..+|.|..+|++.+ .+...|. |...|+++..-
T Consensus 229 s~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~L 307 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQIL 307 (425)
T ss_pred cccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhh
Confidence 3344555556666654 22235667999999988999999999999999999764 3555665 89999998876
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCcE---EEEec-cCCCe--eEEEEcCCCcEEEEEcCCe-EEEEECCCCCcc
Q 036953 147 PLRSEILASGSLDHEVRLWDANTSEC---IGSCD-FYRPI--ASIAFHAEGELLAVASGHK-LYIWPYNNKEEA 213 (792)
Q Consensus 147 P~dg~lLaSgS~DgtVrLWDl~tg~~---v~t~~-h~s~V--~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~ 213 (792)
..++++|++.+.+|+|++||++.-++ +..+. |-..- .-+-.++....++++++|. .+||.++.+...
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 65778888889999999999998666 55553 32222 2223345556777777766 999999988754
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0023 Score=79.89 Aligned_cols=211 Identities=16% Similarity=0.189 Sum_probs=123.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC---C---CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC---CCeEEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHG---D---HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL---DHEVRL 164 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~---D---GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~---DgtVrL 164 (792)
+.+.-..++|-.||++||+.+. + ..++||+-+ |+...+-+.-.+--..++|.| .|++|++.-. ...|.+
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEE
Confidence 3445668899999999998874 2 579999954 654433333333334689999 9999998864 345777
Q ss_pred EECCC---CcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe-EE
Q 036953 165 WDANT---SECIGSC-DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP-FV 239 (792)
Q Consensus 165 WDl~t---g~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~-Ll 239 (792)
|.-+. ++....+ .....|..+.|+.|+..||+-..+.|++|-..+..---+..........+..+.|+|.... |.
T Consensus 286 fErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 286 FERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred EecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence 76543 2222222 2356799999999999999988778999988766421111122223344556999996554 33
Q ss_pred EEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEee------cc----CcccCCCceEEEeEECCCCcEE
Q 036953 240 LTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAA------EL----PLMSSLPFLIVPSVSIDDSRID 309 (792)
Q Consensus 240 aS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s------~l----~~l~gh~~~VwdV~~SpDGr~l 309 (792)
+.+..+.+...+.........+.. +...-.+++ -+|+.+.+.. .. ..+. .+..|.+++|++++..+
T Consensus 366 v~t~~g~~~~~~~~~~v~~s~~~~--~~D~g~vaV-IDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~ 441 (928)
T PF04762_consen 366 VLTSNGQYEIYDFAWDVSRSPGSS--PNDNGTVAV-IDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRF 441 (928)
T ss_pred EEecCCcEEEEEEEEEEEecCCCC--ccCceEEEE-EeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeE
Confidence 333334443333332222222211 111112222 3455544433 11 1112 46788999999988644
Q ss_pred E
Q 036953 310 L 310 (792)
Q Consensus 310 v 310 (792)
+
T Consensus 442 a 442 (928)
T PF04762_consen 442 A 442 (928)
T ss_pred E
Confidence 4
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.02 Score=59.90 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=99.5
Q ss_pred eCCCeEEEEeccCCCcCC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC-----CCCCcEEEEEccCC
Q 036953 76 VEAESLRHLSAKYCPLVP-PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG-----HRRTPWVVRFHPLR 149 (792)
Q Consensus 76 s~d~sIrvWd~~t~~L~g-H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g-----H~~~VtsVafSP~d 149 (792)
...+.|..|+..++...- .......+++...+..|+.+..++ +.++|..+++....+.. .....+++++.+ +
T Consensus 19 ~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~ 96 (246)
T PF08450_consen 19 IPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-D 96 (246)
T ss_dssp TTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-T
T ss_pred cCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-C
Confidence 345666666665553211 111277888884335566666655 55669988865443332 345678899999 8
Q ss_pred CCEEEEEeCC--------CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCc-ccCCeE
Q 036953 150 SEILASGSLD--------HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEE-ASSPII 218 (792)
Q Consensus 150 g~lLaSgS~D--------gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~-~~~~~~ 218 (792)
+++.++.... +.|..++.. ++.......-...+.++|+|+++.|+++. .++|..|++..... ......
T Consensus 97 G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~ 175 (246)
T PF08450_consen 97 GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRV 175 (246)
T ss_dssp S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEE
T ss_pred CCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeee
Confidence 8888887644 557778877 66555555566789999999999887654 45699999865432 211111
Q ss_pred Eec--C-CCCeEEEEEccCCCeEE
Q 036953 219 VLK--T-RRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 219 ~~~--h-~~sVtsVafSPdG~~Ll 239 (792)
... . ....-.+++..+|+.++
T Consensus 176 ~~~~~~~~g~pDG~~vD~~G~l~v 199 (246)
T PF08450_consen 176 FIDFPGGPGYPDGLAVDSDGNLWV 199 (246)
T ss_dssp EEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred EEEcCCCCcCCCcceEcCCCCEEE
Confidence 211 1 22367899999998444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00051 Score=74.81 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=135.0
Q ss_pred cCCcEEEEEeCCCeEEEEeccC-CCc-----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC----CCcEEEEecCC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKY-CPL-----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ----TGNCLKVLSGH 136 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t-~~L-----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~----tgk~v~~L~gH 136 (792)
.....+++.++|.++|+|..+. +++ ..-+.+++++.+.++..+|+.|-..|++.-+.+. .....+....|
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h 113 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH 113 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence 3456789999999999997653 222 2236779999999999999999999999888664 23345666789
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-----------------------------------------cEEEE
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-----------------------------------------ECIGS 175 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-----------------------------------------~~v~t 175 (792)
...|..+-|+- ...++++++.|+.+.---.+.+ .++.+
T Consensus 114 ~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~ 192 (404)
T KOG1409|consen 114 QARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT 192 (404)
T ss_pred hcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence 99999999987 7788999888876543211111 11222
Q ss_pred e-ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 176 C-DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 176 ~-~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
+ +|.+.+.+++|.+....|.++.. .++.+||+-..+... ....+|...|..+..-+.-+.++++..+..|..|+..
T Consensus 193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee--eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 2 46778999999999999999884 459999997665432 4566788888888888877777777776666555544
Q ss_pred e
Q 036953 254 M 254 (792)
Q Consensus 254 ~ 254 (792)
.
T Consensus 271 ~ 271 (404)
T KOG1409|consen 271 V 271 (404)
T ss_pred c
Confidence 3
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0037 Score=71.66 Aligned_cols=282 Identities=15% Similarity=0.130 Sum_probs=164.9
Q ss_pred CCCCCCceEeeecccceeeCCC-CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCC----
Q 036953 19 NHLRRRARNVSRLLAHREISPK-TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVP---- 93 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels~~-tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~g---- 93 (792)
.+....++.+|.-.....+... -.-+.-+.+||+-+++.+-.-.-.... +.-.+...+++||+.++.+..
T Consensus 226 ~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~-----~~d~e~~~l~IWDI~tG~lkrsF~~ 300 (698)
T KOG2314|consen 226 VTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVE-----EDDNEGQQLIIWDIATGLLKRSFPV 300 (698)
T ss_pred EEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccC-----cccCCCceEEEEEccccchhcceec
Confidence 5667888888877666554422 234667788888877544311111101 112456789999999885431
Q ss_pred --CCCCe-EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC-----CeEEEE
Q 036953 94 --PPRST-IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD-----HEVRLW 165 (792)
Q Consensus 94 --H~~~V-~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D-----gtVrLW 165 (792)
....+ --..||.|++++|--..| .|.||+..+-..+-.-.-.-..|....|+| .+++||--... .++-|-
T Consensus 301 ~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~ 378 (698)
T KOG2314|consen 301 IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLM 378 (698)
T ss_pred cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEE
Confidence 11112 246899999999987775 699998765332211111235688899999 77777754321 346667
Q ss_pred ECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcC--------C---eEEEEECCCCCcccCCeEEecCCCCeEEEEEcc
Q 036953 166 DANTSECIGSCD-FYRPIASIAFHAEGELLAVASG--------H---KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP 233 (792)
Q Consensus 166 Dl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSd--------d---~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP 233 (792)
.+.+++.+++.. ++-.=..+-|-.+|.+|++--+ + .+.|+.++.... +.....-...|...+|-|
T Consensus 379 evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI---pve~velke~vi~FaWEP 455 (698)
T KOG2314|consen 379 EVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI---PVEVVELKESVIAFAWEP 455 (698)
T ss_pred ecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC---Cceeeecchheeeeeecc
Confidence 777776665543 2222234566677888876431 1 267777766653 345556678899999999
Q ss_pred CCCeEEEEEe--------eCccccCCCce----e-eecCCCcccCCCCceEEEEecCC---CEEEEee-cc---C-cccC
Q 036953 234 HAAPFVLTAE--------VNDLDSSDSSM----T-RATSPGYLRYPPPAVFVANAQSG---DHVSLAA-EL---P-LMSS 292 (792)
Q Consensus 234 dG~~LlaS~s--------~~dLrs~d~~~----~-l~t~sg~~~~p~~~~~l~~~ssG---~~~~l~s-~l---~-~l~g 292 (792)
.|+.+++-.+ .+.+.....+. . -+...+...|.|...+++++.-. ....+.. .. . +..-
T Consensus 456 ~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~ 535 (698)
T KOG2314|consen 456 HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP 535 (698)
T ss_pred CCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc
Confidence 9998876544 23333211110 1 12334456676666666555322 1222222 11 0 1111
Q ss_pred CCceEEEeEECCCCcEEE
Q 036953 293 LPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 293 h~~~VwdV~~SpDGr~lv 310 (792)
-.+....+.+.|+|||++
T Consensus 536 eh~~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 536 EHFAATEVEWDPTGRYVV 553 (698)
T ss_pred cccccccceECCCCCEEE
Confidence 234567889999999999
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=8e-05 Score=84.32 Aligned_cols=145 Identities=20% Similarity=0.179 Sum_probs=107.0
Q ss_pred cCCcEEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS- 134 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~- 134 (792)
+....+++.+.|+++++|..+.. ++..|+++|.++.|-.+.+.++++ |+-|.+||.--++.+....
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d 822 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED 822 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc
Confidence 56778899999999999998622 356899999999999888888765 7889999987776554332
Q ss_pred -CCCCCcEEEEEccC-CCCE-EEEEeCCCeEEEEECCCCcEEEEec------cCCCeeEEEEcCCCcEEEEEc-CCeEEE
Q 036953 135 -GHRRTPWVVRFHPL-RSEI-LASGSLDHEVRLWDANTSECIGSCD------FYRPIASIAFHAEGELLAVAS-GHKLYI 204 (792)
Q Consensus 135 -gH~~~VtsVafSP~-dg~l-LaSgS~DgtVrLWDl~tg~~v~t~~------h~s~V~sVafSpdG~~LasgS-dd~V~I 204 (792)
...+.+..+..-+. +..+ ++-|+...+||++|.+.++.+..+. .+.-+.+++.-+.|++++++- ++.|.+
T Consensus 823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~ 902 (1034)
T KOG4190|consen 823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI 902 (1034)
T ss_pred CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence 12223333333331 3334 4445788999999999987776653 235578999999999999886 556999
Q ss_pred EECCCCCcc
Q 036953 205 WPYNNKEEA 213 (792)
Q Consensus 205 WDlrt~~~~ 213 (792)
.|.++++.+
T Consensus 903 LDaR~G~vI 911 (1034)
T KOG4190|consen 903 LDARNGKVI 911 (1034)
T ss_pred EecCCCcee
Confidence 999998843
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00041 Score=74.58 Aligned_cols=205 Identities=15% Similarity=0.180 Sum_probs=125.7
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC-CCcCCC------------CCCeEEEEEcC
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY-CPLVPP------------PRSTIAAAFSP 105 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t-~~L~gH------------~~~V~sLafSP 105 (792)
.....++.+.|...|.+++|| |.+++++-....+. +....+. ..+.+| ...|..+.|..
T Consensus 24 tead~ItaVefd~tg~YlatG-------DkgGRVvlfer~~s-~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~ 95 (460)
T COG5170 24 TEADKITAVEFDETGLYLATG-------DKGGRVVLFEREKS-YGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD 95 (460)
T ss_pred cccceeeEEEeccccceEeec-------CCCceEEEeecccc-cccchhhhhhhcccccchhhhhhccHHHHhhheeeec
Confidence 344578999999999999999 44445444433322 2111110 012222 24578888876
Q ss_pred CC--CEEEEEECCCeEEEEECCCCcE-------------------------------------E-----EEe-cCCCCCc
Q 036953 106 DG--RTLASTHGDHTVKIIDCQTGNC-------------------------------------L-----KVL-SGHRRTP 140 (792)
Q Consensus 106 DG--~~LaSGS~DGtVrIWDl~tgk~-------------------------------------v-----~~L-~gH~~~V 140 (792)
++ ..++..+.|++|++|.+..... + +.+ ..|.--|
T Consensus 96 ~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhi 175 (460)
T COG5170 96 DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHI 175 (460)
T ss_pred CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEe
Confidence 43 4677888999999998753200 0 111 3466678
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----cc-----CCCeeEEEEcCCCc--EEEEEcCCeEEEEECCC
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC----DF-----YRPIASIAFHAEGE--LLAVASGHKLYIWPYNN 209 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~----~h-----~s~V~sVafSpdG~--~LasgSdd~V~IWDlrt 209 (792)
.++.|+. |...++++ .|-.|.+|++........+ .+ ..-|++..|||... +..+++.+.|++-|++.
T Consensus 176 NSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 176 NSISFNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred eeeeecC-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 8899988 77777764 5778999998753222221 12 23478889999753 45556677799999984
Q ss_pred CCcccCCe-------------EEecCCCCeEEEEEccCCCeEEE----EEeeCccccCCCc
Q 036953 210 KEEASSPI-------------IVLKTRRSLRAVHFHPHAAPFVL----TAEVNDLDSSDSS 253 (792)
Q Consensus 210 ~~~~~~~~-------------~~~~h~~sVtsVafSPdG~~Lla----S~s~~dLrs~d~~ 253 (792)
...-..+. .+..-.+.|..+.|+++|+++++ +-..||++.....
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~p 314 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNP 314 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCC
Confidence 32111000 01112467899999999997765 4446666654433
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00014 Score=76.57 Aligned_cols=74 Identities=27% Similarity=0.411 Sum_probs=64.1
Q ss_pred CCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc-EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 96 RSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN-CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 96 ~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk-~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
+.|.+++-+| ....+++|+.||.+-+||.+... ++..++.|+..|+.+-|+|.++..|+++++||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 4599999999 55677788899999999998663 34556789999999999999999999999999999999875
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.4e-05 Score=55.65 Aligned_cols=34 Identities=35% Similarity=0.464 Sum_probs=31.9
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIID 123 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWD 123 (792)
.+.+|...|++++|+|++++|++++.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3568999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0019 Score=81.64 Aligned_cols=115 Identities=19% Similarity=0.283 Sum_probs=83.3
Q ss_pred CeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecC-------------C--------CCCcEEEEEccCCCCEEE
Q 036953 97 STIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSG-------------H--------RRTPWVVRFHPLRSEILA 154 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~g-------------H--------~~~VtsVafSP~dg~lLa 154 (792)
....++|+|+++.|+++ +.++.|++||+.++.......+ + -....+++|++ ++++++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYV 819 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYV 819 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEE
Confidence 35679999999865544 5678999999987653211100 0 11346899999 888999
Q ss_pred EEeCCCeEEEEECCCCcEEEEecc--------------CCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCc
Q 036953 155 SGSLDHEVRLWDANTSECIGSCDF--------------YRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEE 212 (792)
Q Consensus 155 SgS~DgtVrLWDl~tg~~v~t~~h--------------~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~ 212 (792)
+-..++.|++||..++........ ......++++++|+++++-+ ++.|++||+++.+.
T Consensus 820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 999999999999988766544321 12467899999999777665 55699999988764
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00025 Score=76.18 Aligned_cols=203 Identities=14% Similarity=0.218 Sum_probs=125.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-E----EEEecCCC------------CCcEEEEEcc-CCCCEEEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN-C----LKVLSGHR------------RTPWVVRFHP-LRSEILASG 156 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk-~----v~~L~gH~------------~~VtsVafSP-~dg~lLaSg 156 (792)
.+-|+++.|...|.+|++|...|.|.+|.-.... | ...|++|. ..|..+.|-. .+-..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3558999999999999999999999999754321 2 23355554 3567788764 233566777
Q ss_pred eCCCeEEEEECCCCc-------------------EE-----------------------EEe--ccCCCeeEEEEcCCCc
Q 036953 157 SLDHEVRLWDANTSE-------------------CI-----------------------GSC--DFYRPIASIAFHAEGE 192 (792)
Q Consensus 157 S~DgtVrLWDl~tg~-------------------~v-----------------------~t~--~h~s~V~sVafSpdG~ 192 (792)
+.|++|++|.+.... ++ +.+ .|.-.+++++|+.|.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999886431 00 001 1333578999999999
Q ss_pred EEEEEcCCeEEEEECCCCCcccCCeEEecC-----CCCeEEEEEccCCCeEEE-EEeeCccccCCCceeeecCCCcccCC
Q 036953 193 LLAVASGHKLYIWPYNNKEEASSPIIVLKT-----RRSLRAVHFHPHAAPFVL-TAEVNDLDSSDSSMTRATSPGYLRYP 266 (792)
Q Consensus 193 ~LasgSdd~V~IWDlrt~~~~~~~~~~~~h-----~~sVtsVafSPdG~~Lla-S~s~~dLrs~d~~~~l~t~sg~~~~p 266 (792)
.++++.+-+|.+|++..........-...| ..-|++..|||....++. +++-..|...|.+..- -+ .
T Consensus 186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a----lc---d 258 (460)
T COG5170 186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA----LC---D 258 (460)
T ss_pred eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh----hc---c
Confidence 999988888999999766533212222222 245889999997665443 4433334333222100 00 0
Q ss_pred CCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 267 PPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 267 ~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.+...+....++...... .+-...|.++.|+++||+|+
T Consensus 259 n~~klfe~~~D~v~~~ff------~eivsSISD~kFs~ngryIl 296 (460)
T COG5170 259 NSKKLFELTIDGVDVDFF------EEIVSSISDFKFSDNGRYIL 296 (460)
T ss_pred CchhhhhhccCcccchhH------HHHhhhhcceEEcCCCcEEE
Confidence 001111111233333333 33677899999999999999
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.63 E-value=6e-05 Score=89.20 Aligned_cols=159 Identities=15% Similarity=0.165 Sum_probs=117.4
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCC--eEEEEEC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH--EVRLWDA 167 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg--tVrLWDl 167 (792)
.+..|....+|++|+-+.++|+.|+..|.|++|++.+|.......+|..+|+.+.-+. ++..+++.+.-. -..+|++
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHhcc
Confidence 3556788899999999999999999999999999999999999999999999999888 777776655433 3679998
Q ss_pred CC-CcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeE-EecCCCCeEEEEEccCCCeEEEEEee
Q 036953 168 NT-SECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPII-VLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 168 ~t-g~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~-~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
.. +.+..+|.. -.++.|+..-..-+.|. .+...|||+.+......... .......-+.+.|+|+.+.++--+-+
T Consensus 1175 ~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvL 1251 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVL 1251 (1516)
T ss_pred ccccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCcee
Confidence 65 445555533 34567776654444444 45699999998875432111 11223344788999999966666669
Q ss_pred CccccCCC
Q 036953 245 NDLDSSDS 252 (792)
Q Consensus 245 ~dLrs~d~ 252 (792)
||++....
T Consensus 1252 WDvR~~~a 1259 (1516)
T KOG1832|consen 1252 WDVRIPEA 1259 (1516)
T ss_pred eeeccHHH
Confidence 99997643
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0039 Score=78.94 Aligned_cols=141 Identities=15% Similarity=0.183 Sum_probs=90.6
Q ss_pred eEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCC---------------CCCcEEEEEccCCCC-EEEEEeCCC
Q 036953 98 TIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGH---------------RRTPWVVRFHPLRSE-ILASGSLDH 160 (792)
Q Consensus 98 V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH---------------~~~VtsVafSP~dg~-lLaSgS~Dg 160 (792)
...++|+| ++..+++...++.|++||..++... .+.+. -....+++|+| +++ ++++-+.++
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~ 762 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESS 762 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCC
Confidence 46899999 5666677777899999998776532 22211 12456799999 666 666667789
Q ss_pred eEEEEECCCCcEEEEe-------------c-c--------CCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCe
Q 036953 161 EVRLWDANTSECIGSC-------------D-F--------YRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPI 217 (792)
Q Consensus 161 tVrLWDl~tg~~v~t~-------------~-h--------~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~ 217 (792)
.|++||+.++...... . . ......++++++|+++++-. +++|++||..++.......
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec
Confidence 9999999876532111 0 0 01245889999998766666 5669999997765321000
Q ss_pred E----------EecCCCCeEEEEEccCCCeEEE
Q 036953 218 I----------VLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 218 ~----------~~~h~~sVtsVafSPdG~~Lla 240 (792)
. ....-.....++++++|+.+++
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 0 0001124668889998874443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0028 Score=67.37 Aligned_cols=166 Identities=10% Similarity=-0.046 Sum_probs=107.7
Q ss_pred cEEEEEeCCCeEEEEeccCCC-----cCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYCP-----LVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~-----L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
..|+.++..+.+.+|...+++ ...|...|+-+.=.. ....+..++.|+++++.++..+.....+.-..-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 355666666677777665442 122333222221111 22356778899999999987554332222111237889
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCC-c-EEEEe--ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccC--C
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTS-E-CIGSC--DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASS--P 216 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg-~-~v~t~--~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~--~ 216 (792)
.+++ |++++++.+....|..|.+... + .+... ...+.--+..|+.....+|++. ++.+.|||++....... .
T Consensus 165 ~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 165 HYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred EEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 9999 9999999999999999988753 2 23322 2444556788999999999999 55699999987653321 1
Q ss_pred eEEecCCCCeEEEEEccCCC
Q 036953 217 IIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 217 ~~~~~h~~sVtsVafSPdG~ 236 (792)
.....|.+.++.+.|++.|.
T Consensus 244 strp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred ccCCCCCCceEEEEecCCCc
Confidence 12234889999999998664
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.011 Score=67.28 Aligned_cols=218 Identities=11% Similarity=0.103 Sum_probs=135.3
Q ss_pred CCCCCceEeeeccccee-eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc----CCC
Q 036953 20 HLRRRARNVSRLLAHRE-ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL----VPP 94 (792)
Q Consensus 20 s~~s~~r~V~~l~~~re-ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L----~gH 94 (792)
+.....+.+|....+.. .......|.-+.++|.++++.+-...... +-.....-...++.+.+||...+.+ ..-
T Consensus 49 ~~~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~-~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~ 127 (561)
T COG5354 49 SEHAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPII-EPEIEISPFTSKNNVFVWDIASGMIVFSFNGI 127 (561)
T ss_pred hhhccceEEccccchhheeeeecCCceecccCcccceeeeeccCCcc-ChhhccCCccccCceeEEeccCceeEeecccc
Confidence 34566778887665543 33444567778889998887654322221 2222333333444688888887743 222
Q ss_pred CCC--eE-EEEEcCCCCEEEEEECCCeEEEEECCCCcEE-EEecCC-CCCcEEEEEccC-CCCEEEE-----EeCCCeEE
Q 036953 95 PRS--TI-AAAFSPDGRTLASTHGDHTVKIIDCQTGNCL-KVLSGH-RRTPWVVRFHPL-RSEILAS-----GSLDHEVR 163 (792)
Q Consensus 95 ~~~--V~-sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v-~~L~gH-~~~VtsVafSP~-dg~lLaS-----gS~DgtVr 163 (792)
..+ .. -+.|+.+.+++|--.. ..++|+++ +.... .-+..- ...|....|+|. +...|+. .+.+++++
T Consensus 128 ~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~ 205 (561)
T COG5354 128 SQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVR 205 (561)
T ss_pred CCcccccceeeeeecchhhhhhcc-CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEE
Confidence 222 33 6788888887765543 36999997 43321 111111 246778888883 3344443 35678899
Q ss_pred EEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc------------CCeEEEEECCCCCcccCCeEEecCCCCeEEEE
Q 036953 164 LWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS------------GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVH 230 (792)
Q Consensus 164 LWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS------------dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVa 230 (792)
+|.+..++.+.+.. ..-.-..+.|++.|++|++-- ...++|+++..... + ......++|...+
T Consensus 206 i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~-V~~~~~~pVhdf~ 281 (561)
T COG5354 206 ILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI---P-VEKDLKDPVHDFT 281 (561)
T ss_pred EEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc---c-eeccccccceeee
Confidence 99998777665542 333345789999998776531 13489999874432 1 2225688999999
Q ss_pred EccCCCeEEEEEee
Q 036953 231 FHPHAAPFVLTAEV 244 (792)
Q Consensus 231 fSPdG~~LlaS~s~ 244 (792)
|.|+++.+++..+.
T Consensus 282 W~p~S~~F~vi~g~ 295 (561)
T COG5354 282 WEPLSSRFAVISGY 295 (561)
T ss_pred ecccCCceeEEecc
Confidence 99999988887753
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00026 Score=89.20 Aligned_cols=137 Identities=13% Similarity=0.173 Sum_probs=105.1
Q ss_pred EEEEEeCCCeEEEEeccCCC------cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYCP------LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~------L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
..++++.|+.+++|.-..++ ..+. ..|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+.|.....+++
T Consensus 2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~ 2299 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFR 2299 (2439)
T ss_pred eEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCcccccee
Confidence 44555556666655543221 1233 779999999999999999999999999987 667777889999999999
Q ss_pred EccCCCCEEEEEe---CCCeEEEEECCCC---cEEEEeccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcc
Q 036953 145 FHPLRSEILASGS---LDHEVRLWDANTS---ECIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEA 213 (792)
Q Consensus 145 fSP~dg~lLaSgS---~DgtVrLWDl~tg---~~v~t~~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~ 213 (792)
|-. ..+++.+ .++.+.+||..-. .++. ..|.+.++++++-|..++|++|+. +.|++||++..+..
T Consensus 2300 Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2300 FIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred eee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence 964 6777765 5678999997542 2333 468999999999999999999994 45999999887754
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00068 Score=77.49 Aligned_cols=136 Identities=14% Similarity=0.194 Sum_probs=103.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-----------CCeEEEE
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-----------DHEVRLW 165 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-----------DgtVrLW 165 (792)
.-+-+.|||-|.+|++-...| |.+|--.+-..++.|. |. .|.-+.|+| ..++|+|-+. -..++||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCC-ccceEEEecCCccccCcccCCCceEEEE
Confidence 456799999999999999987 8899876666666675 76 488899999 9999998652 1569999
Q ss_pred ECCCCcEEEEecc---CCCe-eEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 166 DANTSECIGSCDF---YRPI-ASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 166 Dl~tg~~v~t~~h---~s~V-~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
|+++|...+.|.. ...+ .-+.||.|++++|.-..+.|.||+..+..... ...-.-..|....|+|.+..|+
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld---~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeec---ccccCCccccCcccCCCcceEE
Confidence 9999988887742 2222 24689999999999888889999986644221 0011245688999999988554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.035 Score=58.12 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=92.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECC--------CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE-EEEeCCCeEEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGD--------HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL-ASGSLDHEVRLW 165 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~D--------GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL-aSgS~DgtVrLW 165 (792)
....+.+++.++|+..++.... |.|..++.. ++...... .-....+++|+| +++.| ++-+..+.|..+
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~ 161 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSP-DGKTLYVADSFNGRIWRF 161 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEET-TSSEEEEEETTTTEEEEE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECC-cchheeecccccceeEEE
Confidence 3458899999999977776643 457777766 55443333 456678999999 77655 466778889999
Q ss_pred ECCCCc--E--EEEe---ccC-CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEE-ccCC
Q 036953 166 DANTSE--C--IGSC---DFY-RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHF-HPHA 235 (792)
Q Consensus 166 Dl~tg~--~--v~t~---~h~-s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVaf-SPdG 235 (792)
|+.... . ...+ ... +....++++.+|++.++.. .++|.++|.+ ++... .... ....+++++| -++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~--~i~~-p~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 162 DLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR--EIEL-PVPRPTNCAFGGPDG 237 (246)
T ss_dssp EEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE--EEE--SSSSEEEEEEESTTS
T ss_pred eccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE--EEcC-CCCCEEEEEEECCCC
Confidence 986422 1 1112 222 2478899999998766654 6779999987 55332 1222 2358999999 5777
Q ss_pred CeEEEEE
Q 036953 236 APFVLTA 242 (792)
Q Consensus 236 ~~LlaS~ 242 (792)
+.|++++
T Consensus 238 ~~L~vTt 244 (246)
T PF08450_consen 238 KTLYVTT 244 (246)
T ss_dssp SEEEEEE
T ss_pred CEEEEEe
Confidence 7777765
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0015 Score=78.25 Aligned_cols=173 Identities=12% Similarity=0.101 Sum_probs=118.2
Q ss_pred EEeCCCeEEEEeccCCCcC--CC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCC
Q 036953 74 SWVEAESLRHLSAKYCPLV--PP--PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLR 149 (792)
Q Consensus 74 S~s~d~sIrvWd~~t~~L~--gH--~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~d 149 (792)
-+.-.+.+..+|..+.+.. .+ ...|.-|+. +++.+.+|...|+|.+-|.++.+.+++|.+|.+.|.++.. .
T Consensus 152 ~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~ 226 (1118)
T KOG1275|consen 152 MGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---Q 226 (1118)
T ss_pred ecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---c
Confidence 3333444555666544321 11 223666665 5889999999999999999999999999999999988877 4
Q ss_pred CCEEEEEeCC---------CeEEEEECCCCcEEEEeccCCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCcccC-Ce
Q 036953 150 SEILASGSLD---------HEVRLWDANTSECIGSCDFYRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASS-PI 217 (792)
Q Consensus 150 g~lLaSgS~D---------gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~-~~ 217 (792)
+++|++||.. ..|++||++.-+.+.-+.......-+.|+|.- ..+++++ .+...+.|..+...... ..
T Consensus 227 GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~ 306 (1118)
T KOG1275|consen 227 GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK 306 (1118)
T ss_pred CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCcccee
Confidence 6899999854 45899999987776666544444567788864 3444444 66688888443332211 12
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 218 IVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 218 ~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
........+..++++++++.++.+-..+.|..|.
T Consensus 307 ~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 307 MVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2233445599999999999888777666555543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00046 Score=80.81 Aligned_cols=180 Identities=18% Similarity=0.244 Sum_probs=122.7
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-------CcCCCCCCeEEEEEcC-CCCEEEEEE
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-------PLVPPPRSTIAAAFSP-DGRTLASTH 114 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-------~L~gH~~~V~sLafSP-DG~~LaSGS 114 (792)
.+..+.|++... ....+++++..++ .+|+.... -+.+|..+|+.+.|+| ....+++++
T Consensus 69 ~vad~qws~h~a-------------~~~wiVsts~qka-iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs 134 (1081)
T KOG0309|consen 69 QVADVQWSPHPA-------------KPYWIVSTSNQKA-IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS 134 (1081)
T ss_pred hhcceecccCCC-------------CceeEEecCcchh-hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc
Confidence 455666666632 2234455554444 35655322 2568999999999999 566889999
Q ss_pred CCCeEEEEECCCCc-EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-ccCCCeeEEEEcCCC
Q 036953 115 GDHTVKIIDCQTGN-CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSC-DFYRPIASIAFHAEG 191 (792)
Q Consensus 115 ~DGtVrIWDl~tgk-~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~-~h~s~V~sVafSpdG 191 (792)
.|-.+..||+++-. .+..+..-......|.|+..++..+++ +..+.|++||++.+ .++..+ .+...++.++|..--
T Consensus 135 vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~ 213 (1081)
T KOG0309|consen 135 VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK 213 (1081)
T ss_pred ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhh
Confidence 99999999998753 555555555567789999867776665 56778999999986 455555 477788888887643
Q ss_pred --cEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 192 --ELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 192 --~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
..+-++.++.|+.||..+..... ........+|..-+|-|-|+-.+
T Consensus 214 ~s~~~s~~~d~tvkfw~y~kSt~e~--~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 214 YSEIMSSSNDGTVKFWDYSKSTTES--KRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred hhhhcccCCCCceeeeccccccccc--ceeccccCcceeccccccCceeE
Confidence 33444446779999997765432 23344567777778888665433
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0013 Score=72.91 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=107.6
Q ss_pred cCCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 91 LVPPPRSTIAAAFSPDGR-TLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~-~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
+..|...|..++|||..+ .+..++.+.+|+|.|+.+..++..+..+ ..+++++|.-++.+++..|-.+|.|.+||++.
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 456778899999999665 7888999999999999999999888877 78999999997778888888999999999987
Q ss_pred Cc-EEEEec---cCCCeeEEEEc------CCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 170 SE-CIGSCD---FYRPIASIAFH------AEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 170 g~-~v~t~~---h~s~V~sVafS------pdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
.+ ++..+. ...+|..++.- +.|-+|+.++. .+..|++........+.......+.+.+..+++..+.++
T Consensus 268 ~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l 346 (463)
T KOG1645|consen 268 PEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLL 346 (463)
T ss_pred CCchHhhhhhhhccCcceeecccCccccccccceEEeeeh-hhhhhhhhccccCCCcccccCCCcceeeeeecCccceEE
Confidence 43 222221 22344444332 33444544443 378888765544332223344456677888888778888
Q ss_pred EEEe
Q 036953 240 LTAE 243 (792)
Q Consensus 240 aS~s 243 (792)
++..
T Consensus 347 ~tyR 350 (463)
T KOG1645|consen 347 LTYR 350 (463)
T ss_pred EEec
Confidence 7765
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0025 Score=73.75 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=81.9
Q ss_pred CCeEEEEEcC-CCCEEEEE----ECCCe----EEEEECCCCcEE----EEecCCCCCcEEEEEccCCCCEEEEEeCCCeE
Q 036953 96 RSTIAAAFSP-DGRTLAST----HGDHT----VKIIDCQTGNCL----KVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162 (792)
Q Consensus 96 ~~V~sLafSP-DG~~LaSG----S~DGt----VrIWDl~tgk~v----~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtV 162 (792)
....++.||. +...+.+- +.+|. -.+|++..++.. ..+ .....|.+++++| +.+.++.|+.||.|
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCc-ccceEEEEecCCeE
Confidence 3456778877 55555543 23443 356776655421 222 4778999999999 89999999999999
Q ss_pred EEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCC
Q 036953 163 RLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKE 211 (792)
Q Consensus 163 rLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~ 211 (792)
.+||...+..... ...-..+.++|||+|.+|++|++ +.|.+||+.-..
T Consensus 284 iLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9999987643322 44556789999999999999996 559999986543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00016 Score=85.69 Aligned_cols=173 Identities=14% Similarity=0.127 Sum_probs=121.2
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCC-CcEEEEecCCCCC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDH--TVKIIDCQT-GNCLKVLSGHRRT 139 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DG--tVrIWDl~t-gk~v~~L~gH~~~ 139 (792)
.+...|+.+.-.+.|+++++.++. ..+|...|+-+.-+.||..+++.+.-. -..+|++.+ +...+.|.+
T Consensus 1111 ~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e---- 1186 (1516)
T KOG1832|consen 1111 GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE---- 1186 (1516)
T ss_pred cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc----
Confidence 355667777888899999998774 567889999999888999877665432 467999864 445555553
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCccc
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-----FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEAS 214 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-----h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~ 214 (792)
-.++.|+. ....-+.|.......+||+.++.++.++- ..-.-+...|+|+.++++--+ .+||++..+.+.
T Consensus 1187 d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndG----vLWDvR~~~aIh 1261 (1516)
T KOG1832|consen 1187 DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDG----VLWDVRIPEAIH 1261 (1516)
T ss_pred cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCc----eeeeeccHHHHh
Confidence 34688887 33444444445678999999988776641 222336788999988776422 699999886543
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 215 SPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 215 ~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
.+......+. -.|||+|..++..+.+||+++...
T Consensus 1262 ---~FD~ft~~~~-G~FHP~g~eVIINSEIwD~RTF~l 1295 (1516)
T KOG1832|consen 1262 ---RFDQFTDYGG-GGFHPSGNEVIINSEIWDMRTFKL 1295 (1516)
T ss_pred ---hhhhheeccc-ccccCCCceEEeechhhhhHHHHH
Confidence 2222223332 359999999999999999997543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0025 Score=75.77 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=106.1
Q ss_pred CcEEEEEeCCCeEEEEeccCC--CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 036953 69 KRGLVSWVEAESLRHLSAKYC--PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH 146 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~--~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafS 146 (792)
+..+.-+.-.+.+.+.+.... +...|... ..+|.+++||+.||+|.|..+-+.+...++. -..++.+++++
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~ 121 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALH 121 (846)
T ss_pred cceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEec
Confidence 344444455556666554432 11223222 4589999999999999999998888777665 45789999999
Q ss_pred cC----CCCEEEEEeCCCeEEEEECCC---CcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCC---
Q 036953 147 PL----RSEILASGSLDHEVRLWDANT---SECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSP--- 216 (792)
Q Consensus 147 P~----dg~lLaSgS~DgtVrLWDl~t---g~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~--- 216 (792)
|+ ..+.+++|+..| +.++.-+- ...+..-...++|.+++| .|+++|-++|.+|++||+...+.....
T Consensus 122 Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~p 198 (846)
T KOG2066|consen 122 PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPPP 198 (846)
T ss_pred cchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCCC
Confidence 92 367899999888 77775432 233323357789999998 488999999999999999887653211
Q ss_pred eEEecCCCCeEEEEEccCCC
Q 036953 217 IIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 217 ~~~~~h~~sVtsVafSPdG~ 236 (792)
.........-..+.|.++.+
T Consensus 199 ~~~~R~e~fpphl~W~~~~~ 218 (846)
T KOG2066|consen 199 SQSVRPELFPPHLHWQDEDR 218 (846)
T ss_pred CCCCCcccCCCceEecCCCe
Confidence 10001112234678877665
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0027 Score=69.32 Aligned_cols=183 Identities=15% Similarity=0.178 Sum_probs=112.3
Q ss_pred CCCCCceEeeecccceeeC-----CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCC
Q 036953 20 HLRRRARNVSRLLAHREIS-----PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPP 94 (792)
Q Consensus 20 s~~s~~r~V~~l~~~rels-----~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH 94 (792)
.+..+..+||-...-.+.+ ...+.+..+...+....+.+|...+. ..-++.++|-.--. .......|
T Consensus 42 ~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt-----vtefs~sedfnkm~---~~r~~~~h 113 (404)
T KOG1409|consen 42 VSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT-----VTEFALSEDFNKMT---FLKDYLAH 113 (404)
T ss_pred ccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce-----EEEEEhhhhhhhcc---hhhhhhhh
Confidence 3455556666433333333 23345566666666655555532222 23333333211000 00122356
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEC------------------------------------------CCCcEEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDC------------------------------------------QTGNCLKV 132 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl------------------------------------------~tgk~v~~ 132 (792)
...|..+-|+-...++++.+.|+.+. |-. +.-..+..
T Consensus 114 ~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~ 192 (404)
T KOG1409|consen 114 QARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT 192 (404)
T ss_pred hcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence 66677777776666666666654332 111 11123456
Q ss_pred ecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc--EEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCC
Q 036953 133 LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE--CIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNN 209 (792)
Q Consensus 133 L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~--~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt 209 (792)
+.+|.+.+.++.|.+ ...+|++|..|..+.+||+-.++ ....+.|...|..+.+-+.-+.|.+++ |+.|-+||++.
T Consensus 193 ~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 779999999999999 88999999999999999997543 334456888888888877777777777 66699999987
Q ss_pred CCc
Q 036953 210 KEE 212 (792)
Q Consensus 210 ~~~ 212 (792)
...
T Consensus 272 ~r~ 274 (404)
T KOG1409|consen 272 KRV 274 (404)
T ss_pred eee
Confidence 654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.049 Score=59.71 Aligned_cols=194 Identities=21% Similarity=0.181 Sum_probs=119.8
Q ss_pred CeEEEEEcC-CCCEEEEEECCCe-EEEEECCCCcEEEEecCCCCCc--EEEEEccCCCCEEEEEeCC-----CeEEEEEC
Q 036953 97 STIAAAFSP-DGRTLASTHGDHT-VKIIDCQTGNCLKVLSGHRRTP--WVVRFHPLRSEILASGSLD-----HEVRLWDA 167 (792)
Q Consensus 97 ~V~sLafSP-DG~~LaSGS~DGt-VrIWDl~tgk~v~~L~gH~~~V--tsVafSP~dg~lLaSgS~D-----gtVrLWDl 167 (792)
....++.+| +...++.+-.-|+ ..+||..+++....+....+.- -.-+|++ |+++|++.-.| |.|-+||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345778888 5666667766554 6789999998877665332221 1368999 99999987554 67999999
Q ss_pred C-CCcEEEEec-cCCCeeEEEEcCCCcEEEEEcCC-------------------eEEEEECCCCCcccCCeEE--ecCCC
Q 036953 168 N-TSECIGSCD-FYRPIASIAFHAEGELLAVASGH-------------------KLYIWPYNNKEEASSPIIV--LKTRR 224 (792)
Q Consensus 168 ~-tg~~v~t~~-h~s~V~sVafSpdG~~LasgSdd-------------------~V~IWDlrt~~~~~~~~~~--~~h~~ 224 (792)
. +-+.+..|. +.-..-.+.+.|||+.|+++..+ .|-..|..+++... ...+ ..|.-
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~-q~~Lp~~~~~l 163 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE-QVELPPDLHQL 163 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee-eeecCcccccc
Confidence 9 456666664 44455678899999998887532 13444555555432 1112 23567
Q ss_pred CeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCC-EEEEeeccCcccCCCceEEEeEEC
Q 036953 225 SLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGD-HVSLAAELPLMSSLPFLIVPSVSI 303 (792)
Q Consensus 225 sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~-~~~l~s~l~~l~gh~~~VwdV~~S 303 (792)
+|..++++++|. +..+..|.-...+ .++.+.+. ..|. ...+.............+=+|+++
T Consensus 164 SiRHLa~~~~G~--V~~a~Q~qg~~~~--------------~~PLva~~--~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~ 225 (305)
T PF07433_consen 164 SIRHLAVDGDGT--VAFAMQYQGDPGD--------------APPLVALH--RRGGALRLLPAPEEQWRRLNGYIGSIAAD 225 (305)
T ss_pred ceeeEEecCCCc--EEEEEecCCCCCc--------------cCCeEEEE--cCCCcceeccCChHHHHhhCCceEEEEEe
Confidence 899999999987 3334444222111 11222222 2233 222222222333456778889999
Q ss_pred CCCcEEE
Q 036953 304 DDSRIDL 310 (792)
Q Consensus 304 pDGr~lv 310 (792)
++|.+++
T Consensus 226 ~~g~~ia 232 (305)
T PF07433_consen 226 RDGRLIA 232 (305)
T ss_pred CCCCEEE
Confidence 9998886
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.003 Score=70.20 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=76.7
Q ss_pred EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcE-EEEE
Q 036953 119 VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGEL-LAVA 197 (792)
Q Consensus 119 VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~-Lasg 197 (792)
|++.+..+-+....+.+|...|.+++|+|.+..++..++.+++|++.|+++..++..+.....+++++|+.|... |+.|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 566665555556667789999999999995555899999999999999999999988887799999999988754 5555
Q ss_pred c-CCeEEEEECCCCCc
Q 036953 198 S-GHKLYIWPYNNKEE 212 (792)
Q Consensus 198 S-dd~V~IWDlrt~~~ 212 (792)
- .+.|+|||++..+.
T Consensus 255 l~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEG 270 (463)
T ss_pred ccCceEEEEEccCCCc
Confidence 4 45599999988764
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.02 Score=71.61 Aligned_cols=172 Identities=13% Similarity=0.203 Sum_probs=108.5
Q ss_pred cEEEEEeCCCeEEEE----eccCCC--cC-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---------------C-
Q 036953 70 RGLVSWVEAESLRHL----SAKYCP--LV-PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ---------------T- 126 (792)
Q Consensus 70 ~~L~S~s~d~sIrvW----d~~t~~--L~-gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~---------------t- 126 (792)
..++.+..+|.|.+. +..... .. .-..+|.+++||||+..|+....++++.+.+-. .
T Consensus 88 ~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~ 167 (928)
T PF04762_consen 88 ESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGES 167 (928)
T ss_pred CcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCC
Confidence 345555666666666 333322 12 235689999999999999999999988776532 0
Q ss_pred -------CcEEEEecC------------------------CCCCcEEEEEccCCCCEEEEEeC---C---CeEEEEECCC
Q 036953 127 -------GNCLKVLSG------------------------HRRTPWVVRFHPLRSEILASGSL---D---HEVRLWDANT 169 (792)
Q Consensus 127 -------gk~v~~L~g------------------------H~~~VtsVafSP~dg~lLaSgS~---D---gtVrLWDl~t 169 (792)
|+...+|.| +...-..++|-. |+.+++..+. + ..+|+|+-+
T Consensus 168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re- 245 (928)
T PF04762_consen 168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE- 245 (928)
T ss_pred ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-
Confidence 111122221 111334588988 9999998775 2 569999875
Q ss_pred CcEEEEec-cCCCeeEEEEcCCCcEEEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 170 SECIGSCD-FYRPIASIAFHAEGELLAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 170 g~~v~t~~-h~s~V~sVafSpdG~~LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
|....+-+ ..+--..++|-|.|++||+.-. + .|.+|.-+..+..............|..+.|++|+..|++...
T Consensus 246 G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 246 GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 55443332 2233347899999999999862 2 2777775544432211111134567999999999997776553
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.002 Score=76.50 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=104.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
.+.++|++++ ++.|+-|.-+|.|++++.... . .+...|... . .+|.+++||+.||+|.+-.+-+.+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~-~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------I-LEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------c-cCCceEEEecCCCcEEEeeccCCccce
Confidence 4567788886 789999999999999997643 3 333345543 3 389999999999999999999999989
Q ss_pred EeccCCCeeEEEEcCC-----CcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcccc
Q 036953 175 SCDFYRPIASIAFHAE-----GELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDS 249 (792)
Q Consensus 175 t~~h~s~V~sVafSpd-----G~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs 249 (792)
++.+..++.+++++|+ .+.+++|+..++.++.-+-.+... ........++|.++.|. |+ +++-+.+..++.
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~-~v~l~~~eG~I~~i~W~--g~-lIAWand~Gv~v 183 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKD-SVVLSEGEGPIHSIKWR--GN-LIAWANDDGVKV 183 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCcc-ceeeecCccceEEEEec--Cc-EEEEecCCCcEE
Confidence 9999999999999998 467888885557777654433322 23455678999999997 66 444444444443
Q ss_pred CC
Q 036953 250 SD 251 (792)
Q Consensus 250 ~d 251 (792)
.+
T Consensus 184 yd 185 (846)
T KOG2066|consen 184 YD 185 (846)
T ss_pred Ee
Confidence 33
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0007 Score=73.78 Aligned_cols=110 Identities=11% Similarity=0.142 Sum_probs=88.5
Q ss_pred CcEEEEEeCCCeEEEEeccCC--------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcE---EEEecCC
Q 036953 69 KRGLVSWVEAESLRHLSAKYC--------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNC---LKVLSGH 136 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~--------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~---v~~L~gH 136 (792)
+..++.+...+.|..+|.+.. +..-|...|+++..-. ++++|.+.+.+|+|++||++--++ +.++.||
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH 343 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH 343 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc
Confidence 456777788888988888754 2345888999998777 889999999999999999987776 8899999
Q ss_pred CCCcEEE--EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC
Q 036953 137 RRTPWVV--RFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY 179 (792)
Q Consensus 137 ~~~VtsV--afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~ 179 (792)
-+.-.-+ -.++ ....+++++.|...|+|.++.+..+.++.+.
T Consensus 344 vN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 344 VNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 7644333 3345 6678888999999999999999999888644
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.017 Score=67.96 Aligned_cols=189 Identities=16% Similarity=0.212 Sum_probs=122.7
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----c--CCCCCCeEEEEEcCCCCEE
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----L--VPPPRSTIAAAFSPDGRTL 110 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L--~gH~~~V~sLafSPDG~~L 110 (792)
+..+...|..+.|..+.. ++-+...++.|.+|-.-.+. + ...+..|.+|.|+.||.++
T Consensus 67 LeGH~~sV~vvTWNe~~Q----------------KLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI 130 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNENNQ----------------KLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI 130 (1189)
T ss_pred hccCcceEEEEEeccccc----------------cccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE
Confidence 334445555556655543 34444567778888765542 1 2345568999999999999
Q ss_pred EEEECCCeEEEEECCCCcEE-EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-------cEEEEe-----c
Q 036953 111 ASTHGDHTVKIIDCQTGNCL-KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-------ECIGSC-----D 177 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~v-~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-------~~v~t~-----~ 177 (792)
...-.||.|.+=.++.++.- +.+++ .-...+.|++ |.+.++.+-.+|.++++|.... .+.... .
T Consensus 131 cIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~ 207 (1189)
T KOG2041|consen 131 CIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSN 207 (1189)
T ss_pred EEEEccCCEEEEeeccceecchhcch--heccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecC
Confidence 99999999988776543321 12222 1234689999 8888888888999999997642 232221 1
Q ss_pred cCCCeeEEEEc--------CCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 178 FYRPIASIAFH--------AEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 178 h~s~V~sVafS--------pdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
+...|..+.|. ||...|+++.++ .+.|..-..... |.. ....-.|....|+++|..+++++.+.+-.
T Consensus 208 ~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~---Pvv-~dtgm~~vgakWnh~G~vLAvcG~~~da~ 283 (1189)
T KOG2041|consen 208 FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE---PVV-VDTGMKIVGAKWNHNGAVLAVCGNDSDAD 283 (1189)
T ss_pred CCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC---CeE-EecccEeecceecCCCcEEEEccCccccc
Confidence 34456677774 477889999854 477765433332 333 33347788999999999888777655444
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.048 Score=61.10 Aligned_cols=111 Identities=22% Similarity=0.245 Sum_probs=81.7
Q ss_pred EEcC-CCCEEEEEECCCeEEEEECCCC-----cEEEEecC-------CCCCcEEEEEccCCCCEEEEEe----------C
Q 036953 102 AFSP-DGRTLASTHGDHTVKIIDCQTG-----NCLKVLSG-------HRRTPWVVRFHPLRSEILASGS----------L 158 (792)
Q Consensus 102 afSP-DG~~LaSGS~DGtVrIWDl~tg-----k~v~~L~g-------H~~~VtsVafSP~dg~lLaSgS----------~ 158 (792)
.|.+ +|++++.... |+|.+.|+... +....+.. ..+.+.-+++++ +++.++... .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCC
Confidence 4566 8888877666 99999996433 22233221 223444599999 666666632 1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCc-EEEEEc--CCeEEEEECCCCCccc
Q 036953 159 DHEVRLWDANTSECIGSCDFYRPIASIAFHAEGE-LLAVAS--GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 159 DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~-~LasgS--dd~V~IWDlrt~~~~~ 214 (792)
.++|.++|..+++.+..+.....+..++++||++ +|++.. ++.|.++|..+.+...
T Consensus 278 ~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 2579999999999999998888999999999999 888776 3459999998887543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0094 Score=68.38 Aligned_cols=190 Identities=15% Similarity=0.171 Sum_probs=111.8
Q ss_pred ceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCC--CeEEEEeccCCC---cCCCCCCeEEEEEcCCCC
Q 036953 34 HREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEA--ESLRHLSAKYCP---LVPPPRSTIAAAFSPDGR 108 (792)
Q Consensus 34 ~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d--~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~ 108 (792)
.+.+......+..-.|++++..++.- +.... ..+.+++..+++ +......-..-+|+|||+
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~--------------~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~ 250 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYV--------------SFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGS 250 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEE--------------EEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCC
Confidence 34444444556666777776654322 11111 235555655442 122233445678999999
Q ss_pred EEEEEE-CCCe--EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCe--EEEEECCCCcEEEEeccCCCe
Q 036953 109 TLASTH-GDHT--VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHE--VRLWDANTSECIGSCDFYRPI 182 (792)
Q Consensus 109 ~LaSGS-~DGt--VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~Dgt--VrLWDl~tg~~v~t~~h~s~V 182 (792)
+|+.++ .|+. |.++|+.+++ +..+..-.+.-+.-.|+| |++.++-.+ ..|. |.+.|++.++..........-
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~ 328 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN 328 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC
Confidence 887665 4554 6667887666 344543333344678999 777766655 3444 666677766553333222222
Q ss_pred eEEEEcCCCcEEEEEc--CCe--EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 183 ASIAFHAEGELLAVAS--GHK--LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 183 ~sVafSpdG~~LasgS--dd~--V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
..-.|+|||++|+..+ ++. |.+.|+..... ............-.|.++|+.++....
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~----~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK----IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCc----EEEccccccCCCCCcCCCCceEEEecc
Confidence 2678999999998877 343 66666665553 223444444556788999997776654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0076 Score=68.67 Aligned_cols=137 Identities=9% Similarity=0.177 Sum_probs=99.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC---CeEEEEEC
Q 036953 93 PPPRSTIAAAFSPDGRTLASTH--GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD---HEVRLWDA 167 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS--~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D---gtVrLWDl 167 (792)
...++|...+|+|.++.|++.+ .+-.+.++|+... ....+. ...=..+.|+| ..++++.++-| |.+-+||.
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccC-cccEEEEecCCccccceEEecc
Confidence 5578999999999888887665 5778899998765 444443 22334578999 88999998866 56999998
Q ss_pred CCCcEEE-EeccCCCeeEEEEcCCCcEEEEEc-------CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 168 NTSECIG-SCDFYRPIASIAFHAEGELLAVAS-------GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 168 ~tg~~v~-t~~h~s~V~sVafSpdG~~LasgS-------dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
...-.+. .+. .....-+.|+||++++.+.. |..|.|||+.....- ..+.+.|.|.+++..
T Consensus 348 ~~rf~~~~~~~-~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-----------el~~~~W~p~~~~~t 415 (561)
T COG5354 348 AGRFKVAGAFN-GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-----------ELTNITWDPSGQYVT 415 (561)
T ss_pred CCceEEEEEee-cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-----------hhhhccccCCcccce
Confidence 7754443 332 23345578999999988764 345999999666521 467889999999777
Q ss_pred EEEeeC
Q 036953 240 LTAEVN 245 (792)
Q Consensus 240 aS~s~~ 245 (792)
+++..+
T Consensus 416 tsSs~~ 421 (561)
T COG5354 416 TSSSCP 421 (561)
T ss_pred eeccCC
Confidence 776655
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.001 Score=70.26 Aligned_cols=141 Identities=18% Similarity=0.152 Sum_probs=89.6
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCCCCCCeE-----EEEEcCCCCEEEEEEC-----CCeEEEEECCCCcEEEEecCCCC
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVPPPRSTI-----AAAFSPDGRTLASTHG-----DHTVKIIDCQTGNCLKVLSGHRR 138 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~-----sLafSPDG~~LaSGS~-----DGtVrIWDl~tgk~v~~L~gH~~ 138 (792)
+..+..+..|+.+.+.+.+.-.-..|..++. +.+....++.+.++.. -+..++|+++..+.+..-.....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~ 180 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD 180 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence 4556777778887777765421111222111 2222234555554432 23456677654432222122233
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--ccCCCeeEEEEcCC-CcEEEEEc-CCeEEEEECCC
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC--DFYRPIASIAFHAE-GELLAVAS-GHKLYIWPYNN 209 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~--~h~s~V~sVafSpd-G~~LasgS-dd~V~IWDlrt 209 (792)
.|.+++-+|...+++++|+.||.+-+||.++......+ .|+.+++.+-|||. +..|++++ ++.+..||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 49999999977788888999999999999987443333 48999999999986 46788888 45599999865
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0017 Score=75.22 Aligned_cols=75 Identities=27% Similarity=0.412 Sum_probs=64.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
..+..|.+++++|+..+|+.|+.||.|.+||...+.. .+....-.++.++||| ++.+++.|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 5677899999999999999999999999999876633 2334556688999999 9999999999999999998643
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.092 Score=56.54 Aligned_cols=140 Identities=18% Similarity=0.217 Sum_probs=86.0
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC--cEEEEec---CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 101 AAFSPDGRTLASTHGDHTVKIIDCQTG--NCLKVLS---GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 101 LafSPDG~~LaSGS~DGtVrIWDl~tg--k~v~~L~---gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
++.+.||+.||.- .|..|.|-..+.. .++.+.+ .....=+.++|+| |+.+||.+...|+|+++|+.... +..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEE
Confidence 4566788877764 4556666655432 1222222 2223346799999 99999999999999999997533 223
Q ss_pred e--------ccCCCeeEEEEcCCC-------cEEEEEcCCeEEEEECCCC--CcccCCe--EEe-cCCCCeEEEEEccCC
Q 036953 176 C--------DFYRPIASIAFHAEG-------ELLAVASGHKLYIWPYNNK--EEASSPI--IVL-KTRRSLRAVHFHPHA 235 (792)
Q Consensus 176 ~--------~h~s~V~sVafSpdG-------~~LasgSdd~V~IWDlrt~--~~~~~~~--~~~-~h~~sVtsVafSPdG 235 (792)
+ .....|..+.|-.-. ++|+....+.++-|-+..+ +.-.+.. .+. .....|+++.|+|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 2 234567777775432 4666666766666665322 1111111 111 246689999999998
Q ss_pred CeEEEEEe
Q 036953 236 APFVLTAE 243 (792)
Q Consensus 236 ~~LlaS~s 243 (792)
+.|++++.
T Consensus 160 ~LLlVgG~ 167 (282)
T PF15492_consen 160 RLLLVGGC 167 (282)
T ss_pred CEEEEecc
Confidence 87766655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.024 Score=70.27 Aligned_cols=171 Identities=12% Similarity=0.181 Sum_probs=106.9
Q ss_pred CCcEEEEEeCCCeEEEEeccCCCc---CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC----C--------------
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCPL---VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ----T-------------- 126 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~L---~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~----t-------------- 126 (792)
.+..++.....+.|.+.|..+..+ ..-..+|.+++||||++.++..+.++++.+-+-. .
T Consensus 79 d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~ 158 (1265)
T KOG1920|consen 79 DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKF 158 (1265)
T ss_pred ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccccccccccc
Confidence 344566666777777777776543 2346789999999999999999988888765421 0
Q ss_pred -----CcEEEEecCCCC---------------------CcEEEEEccCCCCEEEEE-----eCCCeEEEEECCCCcEEEE
Q 036953 127 -----GNCLKVLSGHRR---------------------TPWVVRFHPLRSEILASG-----SLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 127 -----gk~v~~L~gH~~---------------------~VtsVafSP~dg~lLaSg-----S~DgtVrLWDl~tg~~v~t 175 (792)
|+....|.|..+ .=+.|.|-- |+++++.. ...+.|++||-+ +..-..
T Consensus 159 v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~ 236 (1265)
T KOG1920|consen 159 VNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNST 236 (1265)
T ss_pred ceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcc
Confidence 111122322111 112488987 88898873 223789999987 332211
Q ss_pred e-ccCCCeeEEEEcCCCcEEEEEc----CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 176 C-DFYRPIASIAFHAEGELLAVAS----GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 176 ~-~h~s~V~sVafSpdG~~LasgS----dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
- ....--.+++|-|.|.++++-. ++.|.+|.-+..+..............|..++|+-++..|++
T Consensus 237 se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 237 SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence 1 1223345789999999998864 445888886554432211111122334899999999996655
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.051 Score=64.77 Aligned_cols=131 Identities=11% Similarity=0.106 Sum_probs=95.2
Q ss_pred CCeEEEEeccCC----CcCCCCCCeEEEEEcCC------C------CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcE
Q 036953 78 AESLRHLSAKYC----PLVPPPRSTIAAAFSPD------G------RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141 (792)
Q Consensus 78 d~sIrvWd~~t~----~L~gH~~~V~sLafSPD------G------~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vt 141 (792)
...+.+.|..+- .+.-|+..|+.+.|.|. + -.||++.-.|.|.+||...+..+..++.|..+|.
T Consensus 34 hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~q 113 (1062)
T KOG1912|consen 34 HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQ 113 (1062)
T ss_pred CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchh
Confidence 334444444332 34568889999999872 1 1567777789999999999988888999999999
Q ss_pred EEEEcc--CCC-CEEEEEeCCCeEEEEECCCCcEEEEeccCC-CeeEEEEcCCC-cE-EEEEcCCeEEEEECC
Q 036953 142 VVRFHP--LRS-EILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEG-EL-LAVASGHKLYIWPYN 208 (792)
Q Consensus 142 sVafSP--~dg-~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s-~V~sVafSpdG-~~-LasgSdd~V~IWDlr 208 (792)
.++|-+ ++. +.|+.-....++.+|+..+|+..+.+.... ...++.++|-. +. .+.++.+.|.+-+.-
T Consensus 114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 999977 334 566777778899999999999998886544 45568888844 44 444556666666553
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.2 Score=55.08 Aligned_cols=158 Identities=17% Similarity=0.203 Sum_probs=100.7
Q ss_pred CCeEEEEeccC-----CCcCCCCCCeEEEEEcCCCCEEEEEEC------------------CCeEEEEECCCCcEEEE--
Q 036953 78 AESLRHLSAKY-----CPLVPPPRSTIAAAFSPDGRTLASTHG------------------DHTVKIIDCQTGNCLKV-- 132 (792)
Q Consensus 78 d~sIrvWd~~t-----~~L~gH~~~V~sLafSPDG~~LaSGS~------------------DGtVrIWDl~tgk~v~~-- 132 (792)
.+.|-+||... +.+..|.-.-..+.+.|||+.|+++.. +-.+.+.|..+|+.+.+
T Consensus 76 ~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 76 RGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred cEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence 34566676651 134455556678889999988888732 22445556677876655
Q ss_pred e--cCCCCCcEEEEEccCCCCEEEEEeCCCe-------EEEEECCCCcEEEEe--------ccCCCeeEEEEcCCCcEEE
Q 036953 133 L--SGHRRTPWVVRFHPLRSEILASGSLDHE-------VRLWDANTSECIGSC--------DFYRPIASIAFHAEGELLA 195 (792)
Q Consensus 133 L--~gH~~~VtsVafSP~dg~lLaSgS~Dgt-------VrLWDl~tg~~v~t~--------~h~s~V~sVafSpdG~~La 195 (792)
+ .-|+..|..+++.+ ++..++-.-..+. |-+++. ++.+..+ .....+-+|++++++.+++
T Consensus 156 Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIA 232 (305)
T ss_pred cCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence 4 34888999999998 7666655543332 223332 2323222 2457899999999999998
Q ss_pred EEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 196 VAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 196 sgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+++ .+.+.+||..+++... ...-..+..|+-.+++ ++++++..
T Consensus 233 ~tsPrGg~~~~~d~~tg~~~~-----~~~l~D~cGva~~~~~--f~~ssG~G 277 (305)
T PF07433_consen 233 VTSPRGGRVAVWDAATGRLLG-----SVPLPDACGVAPTDDG--FLVSSGQG 277 (305)
T ss_pred EECCCCCEEEEEECCCCCEee-----ccccCceeeeeecCCc--eEEeCCCc
Confidence 888 5569999999987543 1122345667766666 44444433
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.18 Score=54.41 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC-------CCCCcEEEEEccCC-----CCEEEEEeCCCeEEEE
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG-------HRRTPWVVRFHPLR-----SEILASGSLDHEVRLW 165 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g-------H~~~VtsVafSP~d-----g~lLaSgS~DgtVrLW 165 (792)
-..++||||+..||.+...|+|++||+.. ..+..+.. -...|.++.|-+.. ...|+.-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 56899999999999999999999999875 33444432 23467777775411 2246666778877776
Q ss_pred ECCC-----CcEEEEec----cCCCeeEEEEcCCCcEEEEEc----CC--------eEEEEECCCCCc-----------c
Q 036953 166 DANT-----SECIGSCD----FYRPIASIAFHAEGELLAVAS----GH--------KLYIWPYNNKEE-----------A 213 (792)
Q Consensus 166 Dl~t-----g~~v~t~~----h~s~V~sVafSpdG~~LasgS----dd--------~V~IWDlrt~~~-----------~ 213 (792)
-+.. .+....|. ....|.++.|+|..++|++|+ ++ +|.-|.+-.... .
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 6532 23333332 467899999999999888886 11 366675533210 0
Q ss_pred c----------CC-eEE----ecCCCCeEEEEEccCCCeEEEEEe
Q 036953 214 S----------SP-IIV----LKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 214 ~----------~~-~~~----~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
. .. ... ....+.|..+..+|||..|++..-
T Consensus 205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~ 249 (282)
T PF15492_consen 205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHF 249 (282)
T ss_pred cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEc
Confidence 0 00 000 113577899999999997766544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.017 Score=64.36 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=84.4
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCCCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCC-CCcEEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVPPPR--STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHR-RTPWVVRF 145 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~gH~~--~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~-~~VtsVaf 145 (792)
+..++....++.+..++..++++.-... ...... .++.+++.++.||.+..+|..+++.+....... ........
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV 318 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence 3466777778888888887664321111 111111 256788888999999999999999887764222 22222233
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCC-Cee-EEEEcCCCcEEEEEcCCeEEEE
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIA-SIAFHAEGELLAVASGHKLYIW 205 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s-~V~-sVafSpdG~~LasgSdd~V~IW 205 (792)
.+..++.++.||.|.++|..+++.+..+.... .+. +..+ .++++++.+.+++|+.|
T Consensus 319 ---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~-~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 ---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVV-VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEE-ECCEEEEEeCCceEEEe
Confidence 34688889999999999999999998886333 332 2222 34555555556667765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.013 Score=67.13 Aligned_cols=143 Identities=19% Similarity=0.296 Sum_probs=92.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEE---CC-CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEE-EEeCCCe--EEEEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTH---GD-HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILA-SGSLDHE--VRLWD 166 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS---~D-GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLa-SgS~Dgt--VrLWD 166 (792)
-...+..-+|+|+++.++.-+ .. ..+.++|+++++....+. ..+.-...+|+| |++.|+ +...|+. |.+.|
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP-DGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC-CCCEEEEEECCCCCccEEEEc
Confidence 345577889999999876553 22 358999999887554443 223334478999 555555 5556665 56668
Q ss_pred CCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--Ce--EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 167 ANTSECIGSCDFYRPIASIAFHAEGELLAVASG--HK--LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 167 l~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d~--V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+..++..+.....+.-..-.|+|||++++..++ +. |+++|........ ......... .-.|+|||++++...
T Consensus 269 l~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r---iT~~~~~~~-~p~~SpdG~~i~~~~ 344 (425)
T COG0823 269 LDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR---LTFSGGGNS-NPVWSPDGDKIVFES 344 (425)
T ss_pred CCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE---eeccCCCCc-CccCCCCCCEEEEEe
Confidence 877764332223333346789999999988874 33 8888887776422 122222222 778999999888777
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0044 Score=42.47 Aligned_cols=39 Identities=44% Similarity=0.680 Sum_probs=34.3
Q ss_pred CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 127 GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 127 gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
++++..+..|...|.++.|++ +..++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355677778999999999999 778999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0068 Score=77.21 Aligned_cols=154 Identities=14% Similarity=0.201 Sum_probs=116.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE 171 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~ 171 (792)
-+-..|.++.=+|...+.++|+.||.|++|.-..++.+..+. +-...|+.+.|+. .|+.+..+..||.+.+|.+. .+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-Cc
Confidence 345678888888888899999999999999998888777765 2237899999998 88888888999999999997 34
Q ss_pred EEEEe-ccCCCeeEEEEcCCCcEEEEEc---CCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc
Q 036953 172 CIGSC-DFYRPIASIAFHAEGELLAVAS---GHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 172 ~v~t~-~h~s~V~sVafSpdG~~LasgS---dd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
+.... .|.....++.|-. ..+++++ +++ +.+||........ .....|...++++++-|.-+.+++++...+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s--~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS--LVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc--eeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence 44444 4777777777755 5666665 444 9999986655433 233668999999999999997777766555
Q ss_pred cccCCC
Q 036953 247 LDSSDS 252 (792)
Q Consensus 247 Lrs~d~ 252 (792)
+..+|.
T Consensus 2360 v~l~D~ 2365 (2439)
T KOG1064|consen 2360 VCLFDI 2365 (2439)
T ss_pred EEEeeh
Confidence 544443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.046 Score=60.86 Aligned_cols=137 Identities=15% Similarity=0.042 Sum_probs=85.2
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCC---CCCCe-EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEE-E
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVP---PPRST-IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWV-V 143 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~g---H~~~V-~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vts-V 143 (792)
+..++....++.+..+|..+++..- -...+ ..... ++..++.++.|+.+..+|..+|+.++...... .+.+ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 3455666666667666665553221 01111 11222 57788889999999999999999888765322 2221 1
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCee------EEEEcCCCcEEEEEc-CCeEEEEECCCCCcc
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIA------SIAFHAEGELLAVAS-GHKLYIWPYNNKEEA 213 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~------sVafSpdG~~LasgS-dd~V~IWDlrt~~~~ 213 (792)
.. .++.++.++.|+.+..||.++++.++.+....... +.... ++ .++.+. ++.+..+|.++++..
T Consensus 142 ~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 142 LV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred EE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEEECCCCEEEEEEccCCCEe
Confidence 22 23466777889999999999999988875433221 11111 33 455555 567999999888643
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.00052 Score=79.58 Aligned_cols=149 Identities=18% Similarity=0.236 Sum_probs=105.4
Q ss_pred cCCCCCCeEEEEEcC-CCCEEEEEE----CCCeEEEEECCCC----cEEEEecC-CCCCcEEEEEccCCCCEEEEEeCCC
Q 036953 91 LVPPPRSTIAAAFSP-DGRTLASTH----GDHTVKIIDCQTG----NCLKVLSG-HRRTPWVVRFHPLRSEILASGSLDH 160 (792)
Q Consensus 91 L~gH~~~V~sLafSP-DG~~LaSGS----~DGtVrIWDl~tg----k~v~~L~g-H~~~VtsVafSP~dg~lLaSgS~Dg 160 (792)
..+|....++++|++ |.+.||.|- .|..+.|||+.++ +....|.+ ......+++|-. +.+++.+|...+
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr 176 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSR 176 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccc
Confidence 456788899999999 788888884 3677999999876 22333433 344566899986 889999999999
Q ss_pred eEEEEECCCCcEEEEeccCCCeeEEEEcC-CCcEEEEEcCCeEEEEE-CCCCCcccCCeEEecC-----CCCeEEEEEcc
Q 036953 161 EVRLWDANTSECIGSCDFYRPIASIAFHA-EGELLAVASGHKLYIWP-YNNKEEASSPIIVLKT-----RRSLRAVHFHP 233 (792)
Q Consensus 161 tVrLWDl~tg~~v~t~~h~s~V~sVafSp-dG~~LasgSdd~V~IWD-lrt~~~~~~~~~~~~h-----~~sVtsVafSP 233 (792)
.++++|++........-....+..+..+| .+.+++...++.|-+|| .++-+. +.....+ ...+..++|.|
T Consensus 177 ~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnien---pl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIEN---PLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhcc---HHHHHhhCCCCcccceeeEEecc
Confidence 99999998543222222344567778888 78899988888899999 443332 1111111 23489999999
Q ss_pred CCCeEEEEEe
Q 036953 234 HAAPFVLTAE 243 (792)
Q Consensus 234 dG~~LlaS~s 243 (792)
...-++++..
T Consensus 254 trtglla~l~ 263 (783)
T KOG1008|consen 254 TRTGLLAVLS 263 (783)
T ss_pred CCcchhhhhc
Confidence 8776666554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.11 Score=53.27 Aligned_cols=139 Identities=19% Similarity=0.088 Sum_probs=87.5
Q ss_pred CCcEEEEEeCCCeEEEEeccCCCcCCC--------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCPLVPP--------PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRT 139 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~L~gH--------~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~ 139 (792)
.+..++....++.+..+|..++++.-. ......+....++..++.+..++.|..+|+.+|+.+..+......
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 344555556677888888766632111 011222233334888999998999999999999999888764422
Q ss_pred c-----------EEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEE
Q 036953 140 P-----------WVVRFHPLRSEILASGSLDHE-VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWP 206 (792)
Q Consensus 140 V-----------tsVafSP~dg~lLaSgS~Dgt-VrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWD 206 (792)
. ..+.+. ++ .++.++.++. +.+ |+.+++.++... ...+..+ ...++..|++++ ++.|.+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1 222222 34 6666777775 555 999999776444 3333332 345666666666 77799999
Q ss_pred CCCCCc
Q 036953 207 YNNKEE 212 (792)
Q Consensus 207 lrt~~~ 212 (792)
+++++.
T Consensus 229 ~~tG~~ 234 (238)
T PF13360_consen 229 LKTGKV 234 (238)
T ss_dssp TTTTEE
T ss_pred CCCCCE
Confidence 999874
|
... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.62 Score=51.90 Aligned_cols=144 Identities=13% Similarity=0.088 Sum_probs=77.6
Q ss_pred CCCcEEEEEccCCCC-EEEEE-eCCC---eEEEEECCCCcEEEEe--ccCCCe---eEEEEc-CCCcEEEEEc--CCe--
Q 036953 137 RRTPWVVRFHPLRSE-ILASG-SLDH---EVRLWDANTSECIGSC--DFYRPI---ASIAFH-AEGELLAVAS--GHK-- 201 (792)
Q Consensus 137 ~~~VtsVafSP~dg~-lLaSg-S~Dg---tVrLWDl~tg~~v~t~--~h~s~V---~sVafS-pdG~~LasgS--dd~-- 201 (792)
...+..+.|.+ +++ +++.- ..+. .+.++|..++.+...+ .....| ....|. +++..++..+ ++-
T Consensus 183 ~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 183 DYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred ccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 34577889988 666 33332 3332 3667788776554443 223332 356654 6666555444 332
Q ss_pred EEEEECCCCCcccCCeEEecCCCCeEE-EEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecC-CC
Q 036953 202 LYIWPYNNKEEASSPIIVLKTRRSLRA-VHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQS-GD 279 (792)
Q Consensus 202 V~IWDlrt~~~~~~~~~~~~h~~sVts-VafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ss-G~ 279 (792)
|++++...+.. ..+..+.-.|+. +.|+++++.+..++...+ |...+...+.-+ +.
T Consensus 262 ly~~~~~~~~~----~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~-------------------p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 262 LYLYDLDGGKP----RQLTSGDWEVTSILGWDEDNNRIYFTANGDN-------------------PGERHLYRVSLDSGG 318 (353)
T ss_dssp EEEEETTSSEE----EESS-SSS-EEEEEEEECTSSEEEEEESSGG-------------------TTSBEEEEEETTETT
T ss_pred EEEEcccccce----eccccCceeecccceEcCCCCEEEEEecCCC-------------------CCceEEEEEEeCCCC
Confidence 88888877652 234445666744 788999998887775321 112222222222 33
Q ss_pred EEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 280 HVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 280 ~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.....+.. ...| ..+.|||||++++
T Consensus 319 ~~~~LT~~--~~~~----~~~~~Spdg~y~v 343 (353)
T PF00930_consen 319 EPKCLTCE--DGDH----YSASFSPDGKYYV 343 (353)
T ss_dssp EEEESSTT--SSTT----EEEEE-TTSSEEE
T ss_pred CeEeccCC--CCCc----eEEEECCCCCEEE
Confidence 33333311 1112 7899999999998
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.014 Score=70.39 Aligned_cols=142 Identities=18% Similarity=0.168 Sum_probs=108.6
Q ss_pred CceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEEC---------CCeEEEEECCCCc
Q 036953 62 DSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHG---------DHTVKIIDCQTGN 128 (792)
Q Consensus 62 a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~---------DGtVrIWDl~tgk 128 (792)
....+..+..++.+...|++.+-|.+.. ++..|.+.|.++.. .|+.|++++. |..|+|||++.-+
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhh
Confidence 4445566677888888899999888765 56789999988776 5999999975 6678999998877
Q ss_pred EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcE---EEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeE
Q 036953 129 CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-SEC---IGSC-DFYRPIASIAFHAEGELLAVAS-GHKL 202 (792)
Q Consensus 129 ~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~---v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V 202 (792)
.+.-+.-+.++ .-+.|+|.-...++.++..|...+-|..+ +.+ +..+ ...+.+..++++++|+.++.+. ++.|
T Consensus 258 al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 258 ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 66555555554 55889997778899999999999998332 222 1222 3456699999999999999998 5569
Q ss_pred EEEE
Q 036953 203 YIWP 206 (792)
Q Consensus 203 ~IWD 206 (792)
.+|-
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9997
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.31 Score=59.05 Aligned_cols=140 Identities=13% Similarity=0.211 Sum_probs=93.9
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCC-cEEEEEccCCCCEEEEEeCCCe-----EEEEECCCC-----
Q 036953 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRT-PWVVRFHPLRSEILASGSLDHE-----VRLWDANTS----- 170 (792)
Q Consensus 102 afSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~-VtsVafSP~dg~lLaSgS~Dgt-----VrLWDl~tg----- 170 (792)
+|++.+..++.|+.||.|.+.+ +.-+.++.|+.+... |..+-... +..+|++.+.|++ +++||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3667888999999999887776 334455778877776 44444333 5578999888765 899998742
Q ss_pred -cEE---EEec-----cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccC-CeEEecCCCCeEEEEEccCCCe--
Q 036953 171 -ECI---GSCD-----FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASS-PIIVLKTRRSLRAVHFHPHAAP-- 237 (792)
Q Consensus 171 -~~v---~t~~-----h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~-~~~~~~h~~sVtsVafSPdG~~-- 237 (792)
+++ ..+. ...++.+++.|.+-+.+|+|-.++ |..+.-+-.+.... .........+|+.+.|..+++.
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 344 2222 245788999999989999998554 77764322211110 1223446789999999999987
Q ss_pred EEEEEe
Q 036953 238 FVLTAE 243 (792)
Q Consensus 238 LlaS~s 243 (792)
+++|..
T Consensus 188 Fv~Tt~ 193 (933)
T KOG2114|consen 188 FVATTE 193 (933)
T ss_pred EEEecc
Confidence 444444
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.013 Score=68.40 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=81.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcE-EEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vt-sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
.-.+.-+.|+|.-..||.+..+|.|.+..++ .+.++++.-|...++ +++|.| |+++|+.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 4458889999999999999999999999988 778899987887777 999999 8999999999999999999999888
Q ss_pred EE--eccCCCeeEEEEcC
Q 036953 174 GS--CDFYRPIASIAFHA 189 (792)
Q Consensus 174 ~t--~~h~s~V~sVafSp 189 (792)
.. +.....|.++-|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 77 45667788888863
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.098 Score=64.05 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=91.9
Q ss_pred CCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCC-cEEEEEcc----CCCCEEEEEeCCCeEEEEECCCCc--EEE---
Q 036953 106 DGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRT-PWVVRFHP----LRSEILASGSLDHEVRLWDANTSE--CIG--- 174 (792)
Q Consensus 106 DG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~-VtsVafSP----~dg~lLaSgS~DgtVrLWDl~tg~--~v~--- 174 (792)
+.+.|+.- .....|+-.|+..|+.+.....|... |..++-.. ....-.+.|-.++.+..||.|-.. ++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444433 34577999999999999998877654 55443321 123445677788899999998642 332
Q ss_pred -EeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 175 -SCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 175 -t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
.+.....+.|++-+.+|. ||+|+ +|.|++||- .++.. ...+.+-.++|..|+.+.||+++++||..+
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~-~g~~A--KT~lp~lG~pI~~iDvt~DGkwilaTc~ty 640 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGY-IAVGSNKGDIRLYDR-LGKRA--KTALPGLGDPIIGIDVTADGKWILATCKTY 640 (794)
T ss_pred cccccCCCceEEEecCCce-EEEEeCCCcEEeecc-cchhh--hhcCCCCCCCeeEEEecCCCcEEEEeecce
Confidence 123455678888777775 55555 666999994 33322 233445579999999999999999999833
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.029 Score=57.49 Aligned_cols=105 Identities=19% Similarity=0.112 Sum_probs=72.8
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccC----C
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFY----R 180 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~----s 180 (792)
++.++++++.++.+..||..+|+.+..+.. .+.+...-.. .+..++.++.|+.+..+|..+|+.++.. ... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 577888889999999999999999988875 3222221122 3456666778889999999999999884 322 1
Q ss_pred CeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcc
Q 036953 181 PIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEA 213 (792)
Q Consensus 181 ~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~ 213 (792)
.........++..++++. ++.|..+|.++++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEE
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEE
Confidence 112222333366666666 677999999998854
|
... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.013 Score=66.00 Aligned_cols=145 Identities=11% Similarity=0.056 Sum_probs=100.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--C-cEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEECCC
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT--G-NCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DHEVRLWDANT 169 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t--g-k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-DgtVrLWDl~t 169 (792)
|.+.|+-+... -.+++.+++.||.++.|--.. + +.+.-+..|-+.|.+++.+. ++.++.|.+. |+.+|++|+.+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 66667666544 467899999999999997543 1 33455667888899999998 8899999777 99999999988
Q ss_pred CcEEEEec---cCCCeeEEEEcCCC--cEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 170 SECIGSCD---FYRPIASIAFHAEG--ELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 170 g~~v~t~~---h~s~V~sVafSpdG--~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
-..+..+. ..+.+. +..++.. ..|+++. ++.+.++|-....+.. .....-|..+|..+.++|.++.+++..
T Consensus 86 ~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~-~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD-GYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred cchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCcc-ceecccccCceEEEEeeccccceeecc
Confidence 65554433 222222 2223322 2455555 3459999986655332 234445889999999999999766554
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.11 Score=62.13 Aligned_cols=191 Identities=15% Similarity=0.086 Sum_probs=126.4
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcC---CC-CEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSP---DG-RTL 110 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSP---DG-~~L 110 (792)
.+...++++.|.|..--.+ ..+-......|.+..-.|.|.+||...+ .+..|.+++..++|-+ +. ..|
T Consensus 53 ~h~s~V~~VrWap~~~p~~----llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRD----LLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL 128 (1062)
T ss_pred cCccceeEEEeccCCCchh----ccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence 4456899999998853211 1111123446677777888999998765 5678889999999987 33 356
Q ss_pred EEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC----cEEEEe----ccCC--
Q 036953 111 ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS----ECIGSC----DFYR-- 180 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg----~~v~t~----~h~s-- 180 (792)
+.-+...++.+|+..+|+..++.........|+.+.|.|.+.+..-+..|.|.+-+.-.. .+.+.+ +|.+
T Consensus 129 laIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~ 208 (1062)
T KOG1912|consen 129 LAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA 208 (1062)
T ss_pred EEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh
Confidence 666777899999999999999888666788889999988888888888888877765321 111111 1111
Q ss_pred -----------------------CeeEEEEcCCCc-EEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 181 -----------------------PIASIAFHAEGE-LLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 181 -----------------------~V~sVafSpdG~-~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
....++|+|.-+ .++..--..+.|+|++-..... ...-....+.-+.|-|+++
T Consensus 209 ~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~---vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 209 HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLA---VVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeE---EEEeccCCcceeEeccCCC
Confidence 112457788764 4444555669999997766443 1111233344566666654
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.44 Score=53.03 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=62.2
Q ss_pred cCCCCEEEEEE---------CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 104 SPDGRTLASTH---------GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 104 SPDG~~LaSGS---------~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
|||+++++... ..+.+.|||+.+++...... ....+....|+| +++.++-.. ++.|.++++.+++..+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-Cccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEE
Confidence 57787777642 24678999999876544333 367888999999 888888875 6789999988775443
Q ss_pred Eec-c-----------------CCCeeEEEEcCCCcEEEEEc
Q 036953 175 SCD-F-----------------YRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 175 t~~-h-----------------~s~V~sVafSpdG~~LasgS 198 (792)
.-. . -+.-..+-|+||+++|+...
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 221 1 12235688999999888764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.78 E-value=1.5 Score=49.62 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEE-e--CCCeEEEEECCCCcEE
Q 036953 98 TIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASG-S--LDHEVRLWDANTSECI 173 (792)
Q Consensus 98 V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSg-S--~DgtVrLWDl~tg~~v 173 (792)
-..++++++++.++.. ..++.|.+.|..+.+......- ......+++++ +++.+..+ . .++++.+.|..+.+.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 4577888888855544 4468999999887776666542 22667899999 55444444 4 3789999999999888
Q ss_pred EEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCccc-CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 174 GSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEAS-SPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 174 ~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~-~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.+......-..++++|+|+.++++. ++.|.+.|........ .......-...-..+.++|+|.++.+...
T Consensus 154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence 8864333238999999999877776 5669999976654331 01111222233457889999997776664
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.068 Score=63.31 Aligned_cols=137 Identities=14% Similarity=0.180 Sum_probs=96.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec--CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS--GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE 171 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~--gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~ 171 (792)
|...|.--+++..+++++.|+.-|.+++|+-..++. ..++ +-.+.+..+..++ +..++|.|+..+.|.++.++.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccC
Confidence 344455556677899999999999999999766653 3333 3455666777888 88889999999999999887743
Q ss_pred EEEE-----e--ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCC-CcccCCeEEecCCCCeEEEEEc
Q 036953 172 CIGS-----C--DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNK-EEASSPIIVLKTRRSLRAVHFH 232 (792)
Q Consensus 172 ~v~t-----~--~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~-~~~~~~~~~~~h~~sVtsVafS 232 (792)
+-.. . .|+..|++++|++++..|++|. .|+|..-.+... ........+..-...|-.++..
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 2211 1 2577899999999999999998 455777666652 1111122344556778777765
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.26 Score=58.80 Aligned_cols=108 Identities=10% Similarity=0.042 Sum_probs=75.5
Q ss_pred EcCCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe------------------------
Q 036953 103 FSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS------------------------ 157 (792)
Q Consensus 103 fSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS------------------------ 157 (792)
+++||+.+...+ ..+.+.+.|..+.+...++.- .+....+.+++ +++++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 345776654332 356778888887776666542 22345677777 666666554
Q ss_pred ----------------CCCeEEEEECCC-----CcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCc
Q 036953 158 ----------------LDHEVRLWDANT-----SECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEE 212 (792)
Q Consensus 158 ----------------~DgtVrLWDl~t-----g~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~ 212 (792)
.+++|.+.|.++ .+.+..+........+.++|||+++++++ ++.|.|+|+.+.+.
T Consensus 278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 235588888887 45666667777788999999999999988 56699999988653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.19 Score=58.19 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD 177 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~ 177 (792)
-....|.. .+.+|+-....+|+|+.--..+....++- ...+..+-. |.+|...+.+ .|.+||..+++.+..+.
T Consensus 71 g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~ 143 (443)
T PF04053_consen 71 GLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRID 143 (443)
T ss_dssp -SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEES
T ss_pred eeEEEEec-CccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEe
Confidence 45678888 45577777788899974222222223331 122333332 5666666544 89999999999999998
Q ss_pred cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCC------Ccc-cCCeEEec-CCCCeEEEEEccCCCeEEEEE
Q 036953 178 FYRPIASIAFHAEGELLAVASGHKLYIWPYNNK------EEA-SSPIIVLK-TRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 178 h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~------~~~-~~~~~~~~-h~~sVtsVafSPdG~~LlaS~ 242 (792)
... |..+.|+++|++++..+++.++|++.+.. +.. ........ -...|.+.+|.-+ .++.+.
T Consensus 144 v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 144 VSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp S-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-
T ss_pred cCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc
Confidence 665 89999999999999999888888887554 100 00122222 2678889999855 555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.67 E-value=3 Score=44.74 Aligned_cols=149 Identities=11% Similarity=0.122 Sum_probs=83.5
Q ss_pred cCCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEEEecCC-CCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 91 LVPPPRSTIAAAFSPDGR-TLASTHGDHTVKIIDCQTGNCLKVLSGH-RRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~-~LaSGS~DGtVrIWDl~tgk~v~~L~gH-~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
+.+-.+.+..++|+|+.+ .+++....+.|..++. .|+.++.+.-. .+..-+|++.. ++.++++--.++.+.++++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEe
Confidence 445566799999999755 5566667788888886 47777776532 34578889876 66666666568999999884
Q ss_pred CC--c----EEEEe--c----cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCC--CC-cccCCeEE------ecCCCCe
Q 036953 169 TS--E----CIGSC--D----FYRPIASIAFHAEGELLAVASGHK-LYIWPYNN--KE-EASSPIIV------LKTRRSL 226 (792)
Q Consensus 169 tg--~----~v~t~--~----h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt--~~-~~~~~~~~------~~h~~sV 226 (792)
.. . ....+ . .+..+..++|++.++.|+++-... ..||.++. .. ... .... ......+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF-VSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E-EEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee-eccccccccccceeccc
Confidence 31 1 11222 1 345689999999987777776433 55555543 11 110 0000 0123457
Q ss_pred EEEEEccCCCeEEEEE
Q 036953 227 RAVHFHPHAAPFVLTA 242 (792)
Q Consensus 227 tsVafSPdG~~LlaS~ 242 (792)
.++.++|....+++-+
T Consensus 174 S~l~~~p~t~~lliLS 189 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILS 189 (248)
T ss_dssp -EEEEETTTTEEEEEE
T ss_pred cceEEcCCCCeEEEEE
Confidence 8999999877666554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.57 Score=44.24 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=67.0
Q ss_pred eEEEEEcC-CC---CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 98 TIAAAFSP-DG---RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 98 V~sLafSP-DG---~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
|++|++.. |+ +.|++|+.|..|++|+- .+.+..+. ....|+.++-.. ...++.+-.+|+|-+|+- .+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeC--ccee
Confidence 66777665 33 58999999999999984 35667776 345677777665 478999999999999975 3445
Q ss_pred EEeccCCCeeEEEEcC---CC-cEEEEEc-CCeE
Q 036953 174 GSCDFYRPIASIAFHA---EG-ELLAVAS-GHKL 202 (792)
Q Consensus 174 ~t~~h~s~V~sVafSp---dG-~~LasgS-dd~V 202 (792)
+..+.+..+.++.+.. || .-|++|- +++|
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 5555556666666543 33 2455554 5544
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.02 Score=39.06 Aligned_cols=31 Identities=42% Similarity=0.598 Sum_probs=28.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIID 123 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWD 123 (792)
.|...|.++.|++++..+++++.|+.+++||
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5677899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.27 Score=58.95 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=83.6
Q ss_pred CCeEEEEEcCCCCEEEEEE------CCCe--EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC--------
Q 036953 96 RSTIAAAFSPDGRTLASTH------GDHT--VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD-------- 159 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS------~DGt--VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D-------- 159 (792)
..+...+++|||+.++... .|.. +.+++. .+.....+.+. ..+.-.|+| +++.+.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678999999999887765 2443 444454 23333333333 378899999 77777666432
Q ss_pred ----CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEE---EECCCCC-cccCCeEEec-CCCCeEEEE
Q 036953 160 ----HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYI---WPYNNKE-EASSPIIVLK-TRRSLRAVH 230 (792)
Q Consensus 160 ----gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~I---WDlrt~~-~~~~~~~~~~-h~~sVtsVa 230 (792)
+.+.+.++..++... .....|..+.|+|||+.++...+++|++ -....++ ....+..... -...+.++.
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 223333443333322 3356799999999999988877777777 4433333 1111222222 234468899
Q ss_pred EccCCCeEEEE
Q 036953 231 FHPHAAPFVLT 241 (792)
Q Consensus 231 fSPdG~~LlaS 241 (792)
|..++. |++.
T Consensus 504 W~~~~~-L~V~ 513 (591)
T PRK13616 504 WRTGDS-LVVG 513 (591)
T ss_pred EecCCE-EEEE
Confidence 999888 4443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.83 Score=55.60 Aligned_cols=173 Identities=15% Similarity=0.144 Sum_probs=110.0
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCC---cCCCCCC-eEEEEEcCCCCEEEEEECCC-----eEEEEECCCC------cEE-
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCP---LVPPPRS-TIAAAFSPDGRTLASTHGDH-----TVKIIDCQTG------NCL- 130 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~-V~sLafSPDG~~LaSGS~DG-----tVrIWDl~tg------k~v- 130 (792)
.++..++.+..++.|-..+..... +..+... |..+....+.+.|++-+.|+ .++|||++.- .++
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 456666777777777666654332 3445555 33333333446777777664 4899998632 233
Q ss_pred -EEecC-----CCCCcEEEEEccCCCCEEEEEeCCCeEEEEE--C-CCC--cEEEEeccCCCeeEEEEcCCCcE-EEEEc
Q 036953 131 -KVLSG-----HRRTPWVVRFHPLRSEILASGSLDHEVRLWD--A-NTS--ECIGSCDFYRPIASIAFHAEGEL-LAVAS 198 (792)
Q Consensus 131 -~~L~g-----H~~~VtsVafSP~dg~lLaSgS~DgtVrLWD--l-~tg--~~v~t~~h~s~V~sVafSpdG~~-LasgS 198 (792)
..+.. ...++.+++.+. +-+.++.|-.||.|.++. + +.. +.........+|+.+.+..+++. ++++.
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T 191 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT 191 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe
Confidence 12222 245688899998 788899999999999884 2 121 12222246789999999988876 44455
Q ss_pred CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 199 GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 199 dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
...|.+|.+.... +. ......+..+++|..|++....+++++
T Consensus 192 t~~V~~y~l~gr~-p~-~~~ld~~G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 192 TEQVMLYSLSGRT-PS-LKVLDNNGISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred cceeEEEEecCCC-cc-eeeeccCCccceeeecCCCCccEEEec
Confidence 5569999997443 22 233556788899999988665354444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.57 Score=58.73 Aligned_cols=166 Identities=12% Similarity=0.150 Sum_probs=102.6
Q ss_pred EEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCC
Q 036953 71 GLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg 150 (792)
..+....-+.+++|-.....- .-.+.|.++.|.-+.+.++.+..+|.|.+-|..+.... ....-.+.|.+++|+| |+
T Consensus 45 ~~~ei~~~~kv~~~~~s~~~~-~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~-De 121 (1265)
T KOG1920|consen 45 KIFEIESVGKVRLVAESFLPE-DGDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSP-DE 121 (1265)
T ss_pred cceeeeccccccceeecccCc-CCCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecC-CC
Confidence 333333333355554332211 22367999999999999999999999999988766422 2223457899999999 99
Q ss_pred CEEEEEeCCCeEEEEEC----CCCcEE-------------------EEec----------------------cCCCeeEE
Q 036953 151 EILASGSLDHEVRLWDA----NTSECI-------------------GSCD----------------------FYRPIASI 185 (792)
Q Consensus 151 ~lLaSgS~DgtVrLWDl----~tg~~v-------------------~t~~----------------------h~s~V~sV 185 (792)
++++..+.+.++.+-+- -..+++ ..|. ..+.=.+|
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~I 201 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSI 201 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceE
Confidence 99999888888765322 111111 0110 11122359
Q ss_pred EEcCCCcEEEEEc-----C-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 186 AFHAEGELLAVAS-----G-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 186 afSpdG~~LasgS-----d-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.|--||+++++.. + .+|++||-. +.... .......-=.+++|-|.|..+++...
T Consensus 202 sWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns---~se~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 202 SWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS---TSEPVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred EEccCCcEEEEEEEeccCCceeEEEeccc-chhhc---ccCcccccccceeecCCCCeEeeeee
Confidence 9999999999953 3 349999976 32111 01111222347889998886655433
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.56 Score=50.33 Aligned_cols=130 Identities=15% Similarity=0.056 Sum_probs=82.9
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCC---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEE-EE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVP---PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWV-VR 144 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~g---H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vts-Va 144 (792)
+..++-++-.+.+.-.|.+++.+.- ....+.+-+.- -|++++.|...|.+++.+.++|+..+.|.... .|.+ ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceE
Confidence 4445555555555555555543321 12233332222 47789999999999999999998888876432 3332 23
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCC-CeeEEEEcC-CCcEEEEEcCCe
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHA-EGELLAVASGHK 201 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s-~V~sVafSp-dG~~LasgSdd~ 201 (792)
..+ ++.++..++.|++.+..|.++..++...+-.+ -..+-+..+ ++.+.++...+.
T Consensus 101 ~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 101 CDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA 158 (354)
T ss_pred EcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence 344 78999999999999999999999998875333 233444555 455444444444
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.43 Score=56.94 Aligned_cols=92 Identities=13% Similarity=0.222 Sum_probs=64.6
Q ss_pred CCeEEEEECCC-----CcEEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcE------------EEEec
Q 036953 116 DHTVKIIDCQT-----GNCLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRLWDANTSEC------------IGSCD 177 (792)
Q Consensus 116 DGtVrIWDl~t-----gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrLWDl~tg~~------------v~t~~ 177 (792)
++.|.+.|..+ .+.+..+. -.....+++++| |+++++.++ .+.+|.+.|+.+.+. +....
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 35688888777 33444443 455678899999 777766554 689999999987542 33344
Q ss_pred cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCC
Q 036953 178 FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNN 209 (792)
Q Consensus 178 h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt 209 (792)
........+|+++|+...+-. +..|-.||+.+
T Consensus 373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 444455778999998666655 66699999876
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.4 Score=54.44 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=68.8
Q ss_pred cEEEEEeCCCeEEEEeccCCC--cC-------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCc
Q 036953 70 RGLVSWVEAESLRHLSAKYCP--LV-------PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP 140 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~--L~-------gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V 140 (792)
...+.+..++.|..||.+... +. .......|++-+.+| +||+|+.+|.||+||-...+....|.+-..+|
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 356677778888888887431 11 123346777777666 79999999999999954333445567888999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
.+|..+. ||++++..+ +..+.|++.
T Consensus 622 ~~iDvt~-DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTA-DGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecC-CCcEEEEee-cceEEEEEE
Confidence 9999999 888877654 567777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.085 Score=61.86 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=73.3
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCee-EEEEcCCCcEEEEEc-CCeEEEEECCCCCccc
Q 036953 138 RTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIA-SIAFHAEGELLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 138 ~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~-sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
-.|.-+.|+| .-+++|++..+|.|-+.-++ -+.++++. ++-.++ +++|.|||+.|++|- |++|++-|..++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3567799999 88999999999999998887 66777776 555666 999999999999998 6669999999887543
Q ss_pred CCeEEecCCCCeEEEEEcc
Q 036953 215 SPIIVLKTRRSLRAVHFHP 233 (792)
Q Consensus 215 ~~~~~~~h~~sVtsVafSP 233 (792)
. ....-...|.++-|.+
T Consensus 99 ~--~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 S--FLFSVETDISKGIWDR 115 (665)
T ss_pred c--cccccccchheeeccc
Confidence 1 1233456788888874
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.9 Score=48.80 Aligned_cols=170 Identities=15% Similarity=0.194 Sum_probs=113.1
Q ss_pred CcEEEEE-eCCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecCCCCCcE
Q 036953 69 KRGLVSW-VEAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPW 141 (792)
Q Consensus 69 ~~~L~S~-s~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~Vt 141 (792)
+.+++.. ...+.+.+.+..+.+.. .-......++++++++.+..+.. ++++.+.|..+++.+.....-..+ .
T Consensus 85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~ 163 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-T 163 (381)
T ss_pred CCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-c
Confidence 3333333 34577888885544221 11225678999999988887765 689999999988877775433233 8
Q ss_pred EEEEccCCCCEEE-EEeCCCeEEEEECCCCcEEE-----EeccCCCeeEEEEcCCCcEEEEEcC----CeEEEEECCCCC
Q 036953 142 VVRFHPLRSEILA-SGSLDHEVRLWDANTSECIG-----SCDFYRPIASIAFHAEGELLAVASG----HKLYIWPYNNKE 211 (792)
Q Consensus 142 sVafSP~dg~lLa-SgS~DgtVrLWDl~tg~~v~-----t~~h~s~V~sVafSpdG~~LasgSd----d~V~IWDlrt~~ 211 (792)
.+++.| +++.++ +-..+++|.+.|........ ..........+.++++|+++.+..+ +.+...|..+..
T Consensus 164 ~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 164 GVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred eEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 899999 777544 44578999999987765553 1333445578899999997777652 358888888776
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 212 EASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 212 ~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
...... ..... .-..+.++|+|+.+.+.-
T Consensus 243 v~~~~~-~~~~~-~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 243 VTATDL-PVGSG-APRGVAVDPAGKAAYVAN 271 (381)
T ss_pred EEEecc-ccccC-CCCceeECCCCCEEEEEe
Confidence 432101 11112 455688999999777664
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.52 Score=53.13 Aligned_cols=132 Identities=15% Similarity=0.066 Sum_probs=80.3
Q ss_pred cEEEEEeCCCeEEEEeccCCCcCCC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCC-CCcEEEEEc
Q 036953 70 RGLVSWVEAESLRHLSAKYCPLVPP--PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHR-RTPWVVRFH 146 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~L~gH--~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~-~~VtsVafS 146 (792)
..++....++.+..+|..+++..-. ......+.. ++..++.++.|+.+..+|..+++.+.....-. .......+.
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~ 334 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY 334 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE
Confidence 4555666677777777766532211 011111222 56788888899999999999998877654211 122223332
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEecc-CCCee-EEEEcCCCcEEEEEcCCeEEEEEC
Q 036953 147 PLRSEILASGSLDHEVRLWDANTSECIGSCDF-YRPIA-SIAFHAEGELLAVASGHKLYIWPY 207 (792)
Q Consensus 147 P~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h-~s~V~-sVafSpdG~~LasgSdd~V~IWDl 207 (792)
+..++.++.||.+.+.|..+|+.+..... ...+. ...+ .++++++...++.|+.++.
T Consensus 335 ---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 ---NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ---CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence 35778889999999999999998887753 22222 2222 2444444444666877764
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.96 E-value=4.8 Score=45.77 Aligned_cols=174 Identities=16% Similarity=0.105 Sum_probs=87.6
Q ss_pred cCCcEEEEEeCCC--eEEEEeccCC---CcCCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCc
Q 036953 67 DAKRGLVSWVEAE--SLRHLSAKYC---PLVPPP-RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP 140 (792)
Q Consensus 67 d~~~~L~S~s~d~--sIrvWd~~t~---~L~gH~-~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V 140 (792)
+++..|+....++ .+...|+.++ +|.... +......++++.+.++.......|+-.|+.+.+....+......+
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~ 125 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK 125 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc
Confidence 3444455444343 3444455554 333332 223356677888888766666788889999998777777666666
Q ss_pred EEEEEcc-CCCCEEEEEeC---C-------------------CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCc-EEEE
Q 036953 141 WVVRFHP-LRSEILASGSL---D-------------------HEVRLWDANTSECIGSCDFYRPIASIAFHAEGE-LLAV 196 (792)
Q Consensus 141 tsVafSP-~dg~lLaSgS~---D-------------------gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~-~Las 196 (792)
-...|.. .+...++-.-. | ..|.--|+.+|+....+.....+.-+.|+|... +|+.
T Consensus 126 g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 126 GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence 5566643 25555543321 1 235556888888887888888999999999775 4444
Q ss_pred EcCC---e--EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 197 ASGH---K--LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 197 gSdd---~--V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
|-.+ . -+||-+++-.....+.........+.-=-|.|||..|..
T Consensus 206 CHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 206 CHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred eccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 4322 2 266766443221101111111233444456666665554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=3 Score=45.69 Aligned_cols=151 Identities=11% Similarity=0.189 Sum_probs=98.6
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCC-CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH-RRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH-~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
+.+-...+.++.|+|+.+.|++..+...-.||=...|+.+.++.-. -...-.+.|-. +++++++--.++++.++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcC
Confidence 4555666999999999999988888877778877788888877521 12234577776 777777777888888887765
Q ss_pred CcEE-------EEe---cc-CCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEec-------CCCCeEEEE
Q 036953 170 SECI-------GSC---DF-YRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLK-------TRRSLRAVH 230 (792)
Q Consensus 170 g~~v-------~t~---~h-~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~-------h~~sVtsVa 230 (792)
...+ ..+ .+ +.....++|+|..+.|.++-... +.||.+......-....... .-..|.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 4221 111 22 56788999999999988887554 55555543331110111111 123577889
Q ss_pred EccCCCeEEEEE
Q 036953 231 FHPHAAPFVLTA 242 (792)
Q Consensus 231 fSPdG~~LlaS~ 242 (792)
|++....+++-+
T Consensus 240 ~~~~~~~LLVLS 251 (316)
T COG3204 240 FNAITNSLLVLS 251 (316)
T ss_pred ecCCCCcEEEEe
Confidence 988665555433
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.89 Score=48.15 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=82.2
Q ss_pred CCCEEEEEECCCeEEEEECC-CCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE----------
Q 036953 106 DGRTLASTHGDHTVKIIDCQ-TGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG---------- 174 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~-tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~---------- 174 (792)
.++.|+.|..+| +.+++.. ..+...... ...|..+..-+ +-+.++.-+ |+++.++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 578999999998 8999983 333333332 33499999998 666666654 6999999987643332
Q ss_pred -----EeccCCCeeEEE---EcCCCcEEEEEcCCeEEEEECCCCCccc-CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 175 -----SCDFYRPIASIA---FHAEGELLAVASGHKLYIWPYNNKEEAS-SPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 175 -----t~~h~s~V~sVa---fSpdG~~LasgSdd~V~IWDlrt~~~~~-~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.+.....+..++ -......|+++...+|.+|......... .......-.+.+..++|. ++.++++..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC
Confidence 222233444444 2234467777777788888876642211 122334456889999998 454555543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.8 Score=48.92 Aligned_cols=110 Identities=18% Similarity=0.215 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCEEEEE-ECCC----eEEEEECCCCcEEEE-ecCCCCCcEEEEEccCCCCEEEEEeCC-----------C
Q 036953 98 TIAAAFSPDGRTLAST-HGDH----TVKIIDCQTGNCLKV-LSGHRRTPWVVRFHPLRSEILASGSLD-----------H 160 (792)
Q Consensus 98 V~sLafSPDG~~LaSG-S~DG----tVrIWDl~tgk~v~~-L~gH~~~VtsVafSP~dg~lLaSgS~D-----------g 160 (792)
+....+|||+++++.+ +..| .++++|+.+++.+.. +..- ....+.|.+ +++.|+....| .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 4468899999999866 3333 599999999976543 2221 223499999 76666555433 2
Q ss_pred eEEEEECCCCcE--EEEec--cCCC-eeEEEEcCCCcEEEEEc---CC--eEEEEECCCC
Q 036953 161 EVRLWDANTSEC--IGSCD--FYRP-IASIAFHAEGELLAVAS---GH--KLYIWPYNNK 210 (792)
Q Consensus 161 tVrLWDl~tg~~--v~t~~--h~s~-V~sVafSpdG~~LasgS---dd--~V~IWDlrt~ 210 (792)
.|+.|++.+... ...+. .... ...+..++|+++|+..+ .. .+++.|+...
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 488888887632 23343 2333 67889999999887654 22 3899999875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.2 Score=51.67 Aligned_cols=169 Identities=16% Similarity=0.164 Sum_probs=88.4
Q ss_pred cCCCceeecCCcEEEEEeCCCeEEEE-eccCCC--cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC
Q 036953 59 GPSDSSVRDAKRGLVSWVEAESLRHL-SAKYCP--LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG 135 (792)
Q Consensus 59 G~~a~sv~d~~~~L~S~s~d~sIrvW-d~~t~~--L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g 135 (792)
|....++|..+...+......+|+++ +.+... ....+..+..+-. |..|...+.+ .|.+||..+++.++.+..
T Consensus 69 G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 69 GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV 144 (443)
T ss_dssp EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS
T ss_pred CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec
Confidence 33344555556666666667778885 332221 1111222333322 8878777665 899999999999999973
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-----------cEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEE
Q 036953 136 HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-----------ECIGSC-DFYRPIASIAFHAEGELLAVASGHKLY 203 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-----------~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~ 203 (792)
. .|..+.|++ ++++++..+.+ ++.+++.+.. .....+ .....|.+..|.-+ -++.+... +|+
T Consensus 145 ~--~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lk 218 (443)
T PF04053_consen 145 S--AVKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLK 218 (443)
T ss_dssp ---E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEE
T ss_pred C--CCcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEE
Confidence 3 389999999 88999888765 6777765433 123333 33778999999877 55555554 666
Q ss_pred EEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 204 IWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 204 IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
- +-.++.. ....-..+++=+...+..+.+.+...
T Consensus 219 Y--l~~Ge~~----~i~~ld~~~yllgy~~~~~~ly~~Dr 252 (443)
T PF04053_consen 219 Y--LVNGETG----IIAHLDKPLYLLGYLPKENRLYLIDR 252 (443)
T ss_dssp E--EETTEEE----EEEE-SS--EEEEEETTTTEEEEE-T
T ss_pred E--EEcCCcc----eEEEcCCceEEEEEEccCCEEEEEEC
Confidence 6 3344321 12223456666777776665555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.36 Score=57.41 Aligned_cols=137 Identities=12% Similarity=0.019 Sum_probs=89.4
Q ss_pred EEEEEeCCCeEEEEeccCCCc-----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE---EE--Ee-cCCCCC
Q 036953 71 GLVSWVEAESLRHLSAKYCPL-----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC---LK--VL-SGHRRT 139 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L-----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~---v~--~L-~gH~~~ 139 (792)
.+.-+..-+.+.+++-..+.+ .+-...+..+..|++..++|.|+..|.|.++-++.+.. +. .+ +.|+..
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~r 126 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCR 126 (726)
T ss_pred eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCce
Confidence 344445556666666555422 12334466677888888999999999999998875432 11 11 137889
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCC-----cEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCC
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANTS-----ECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNK 210 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-----~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~ 210 (792)
|++++|++ ++..+++|...|+|.+-.+... .....+...+.|-.+++. ++.+|++.. -+-.+++...+
T Consensus 127 VTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl-~r~~Lc~tE~e 199 (726)
T KOG3621|consen 127 VTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL-TRCILCQTEAE 199 (726)
T ss_pred EEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh-hhhheeecchh
Confidence 99999999 9999999999999998887762 122223466778777764 333333333 23455555444
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.48 E-value=4.2 Score=43.05 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=91.9
Q ss_pred cCCcEEEEEeCCCeEEEEecc-CC--CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE------------
Q 036953 67 DAKRGLVSWVEAESLRHLSAK-YC--PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK------------ 131 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~-t~--~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~------------ 131 (792)
.++..++.+.++| +.+++.. .. ....+...|..+...++-+.|++-+ |+.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 3566777777777 6677662 11 1122334499999999877777655 5999999987543222
Q ss_pred ---EecCCCCCcEEEE-EccCCCCEEEEEeCCCeEEEEECCCC-----cEEEEeccCCCeeEEEEcCCCcEEEEEcCCeE
Q 036953 132 ---VLSGHRRTPWVVR-FHPLRSEILASGSLDHEVRLWDANTS-----ECIGSCDFYRPIASIAFHAEGELLAVASGHKL 202 (792)
Q Consensus 132 ---~L~gH~~~VtsVa-fSP~dg~lLaSgS~DgtVrLWDl~tg-----~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V 202 (792)
.+ .....+...+ -....+...+.+...++|.+|..... +..+.+.....+..++|. ++.|+.+..+..
T Consensus 83 ~~~~~-~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f 159 (275)
T PF00780_consen 83 LPTKL-PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGF 159 (275)
T ss_pred ccccc-cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCce
Confidence 11 1223344444 11224444555556668888877652 466677788899999998 778888877779
Q ss_pred EEEECCCCCc
Q 036953 203 YIWPYNNKEE 212 (792)
Q Consensus 203 ~IWDlrt~~~ 212 (792)
.+.|+.++..
T Consensus 160 ~~idl~~~~~ 169 (275)
T PF00780_consen 160 YLIDLNTGSP 169 (275)
T ss_pred EEEecCCCCc
Confidence 9999986653
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.093 Score=63.10 Aligned_cols=133 Identities=17% Similarity=0.227 Sum_probs=89.2
Q ss_pred EEEEcCCCCEEEEEEC----CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 100 AAAFSPDGRTLASTHG----DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 100 sLafSPDG~~LaSGS~----DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
-..|+|...+|++++. .|.|.||- ++|++-.... ..-.++++|||| ..-.|+.|-.-|.+.+|...+.+.-..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccCh-HHHHHhhccccceeEEEecCCceeeee
Confidence 3468888888877764 47788874 5565432221 112356799999 777788888899999999887654333
Q ss_pred -eccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecC--CCC--eEEEEEccCCC
Q 036953 176 -CDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKT--RRS--LRAVHFHPHAA 236 (792)
Q Consensus 176 -~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h--~~s--VtsVafSPdG~ 236 (792)
..|..+|..+.|+++|..|+++..-+ |.+|.+....... -.....| .+. ..+..+++++.
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q-~~~~~~hel~~~ltl~cfRL~~~~E 162 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQ-TSNIMQHELNDQLTLWCFRLSYDRE 162 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccc-cchhhhhHhhceeeEEEEecCCChH
Confidence 35899999999999999999998544 9999886444332 1112222 233 34555566643
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.99 Score=50.85 Aligned_cols=142 Identities=10% Similarity=-0.009 Sum_probs=86.6
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCc-----E
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP-----W 141 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V-----t 141 (792)
+..++.+..++.+..+|.+++++.-....-..+.-+| .+..++.+..++.+.-+|..+|+.++.+......+ .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 199 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES 199 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence 4566777778889899988775432211100111122 35567778889999999999999998886432111 1
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCC--------eeEEEEcC---CCcEEEEEcCCeEEEEECCCC
Q 036953 142 VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRP--------IASIAFHA---EGELLAVASGHKLYIWPYNNK 210 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~--------V~sVafSp---dG~~LasgSdd~V~IWDlrt~ 210 (792)
..... +..++.++.++.+..+|..+++.++.+....+ ...+.-+| ++..++.+.++.++.+|..++
T Consensus 200 sP~v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 200 APATA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCEEE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 11111 23566677899999999999988776532111 11111122 444444445677999999888
Q ss_pred Ccc
Q 036953 211 EEA 213 (792)
Q Consensus 211 ~~~ 213 (792)
+..
T Consensus 277 ~~~ 279 (394)
T PRK11138 277 QIV 279 (394)
T ss_pred CEE
Confidence 743
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.14 E-value=2.5 Score=49.94 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=87.5
Q ss_pred cCCCCCCeEEEEEcCC----C-CEEEEEECCCeEEEEECC-----CCcEEEEecCCC-C----CcEEEEEccCCCCEEEE
Q 036953 91 LVPPPRSTIAAAFSPD----G-RTLASTHGDHTVKIIDCQ-----TGNCLKVLSGHR-R----TPWVVRFHPLRSEILAS 155 (792)
Q Consensus 91 L~gH~~~V~sLafSPD----G-~~LaSGS~DGtVrIWDl~-----tgk~v~~L~gH~-~----~VtsVafSP~dg~lLaS 155 (792)
..|.-.-|..+.|.|- - .+||+ .-.+.|.||.+. .++.+..-..+- . -..++.||| ...+|+.
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~V 129 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTV 129 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEE
Confidence 3455566999999993 3 34555 445679999875 223222211111 1 124688999 6667666
Q ss_pred EeCCCeEEEEECCC--CcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe--EEEEECCCCCcccCC-eEEecCCCCeEEEE
Q 036953 156 GSLDHEVRLWDANT--SECIGSCDFYRPIASIAFHAEGELLAVASGHK--LYIWPYNNKEEASSP-IIVLKTRRSLRAVH 230 (792)
Q Consensus 156 gS~DgtVrLWDl~t--g~~v~t~~h~s~V~sVafSpdG~~LasgSdd~--V~IWDlrt~~~~~~~-~~~~~h~~sVtsVa 230 (792)
-.....=.+++++. .+....+...+.|.|.+|.+||+.|+++-+.. -+|||-......... ...+.-.+.|.++.
T Consensus 130 LT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~ 209 (671)
T PF15390_consen 130 LTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIE 209 (671)
T ss_pred EecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEE
Confidence 55554445566654 33444457788999999999999888877555 689986544322111 12233345566665
Q ss_pred EccCCCeEEEEE
Q 036953 231 FHPHAAPFVLTA 242 (792)
Q Consensus 231 fSPdG~~LlaS~ 242 (792)
-.-|.. ++++.
T Consensus 210 AT~dsq-VAvaT 220 (671)
T PF15390_consen 210 ATVDSQ-VAVAT 220 (671)
T ss_pred Eeccce-EEEEe
Confidence 444433 44433
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=94.13 E-value=9.9 Score=40.86 Aligned_cols=193 Identities=12% Similarity=0.157 Sum_probs=98.6
Q ss_pred ceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCC-eEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEE
Q 036953 34 HREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAE-SLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 34 ~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~-sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaS 112 (792)
.+.+....+.+..++|+|+...+ +++.+....++....++ .++.+... + .+....+++..++.++++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tL------faV~d~~~~i~els~~G~vlr~i~l~-----g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTL------FAVQDEPGEIYELSLDGKVLRRIPLD-----G-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEE------EEEETTTTEEEEEETT--EEEEEE-S-----S--SSEEEEEE-STTEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeE------EEEECCCCEEEEEcCCCCEEEEEeCC-----C-CCCceeEEEECCCEEEEE
Confidence 44555555678999999986543 23346677777777654 44444432 2 345788899877766666
Q ss_pred EECCCeEEEEECCCCc------EEEEec-----CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC---CcEEEEe--
Q 036953 113 THGDHTVKIIDCQTGN------CLKVLS-----GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT---SECIGSC-- 176 (792)
Q Consensus 113 GS~DGtVrIWDl~tgk------~v~~L~-----gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t---g~~v~t~-- 176 (792)
--.++.+.++++.... ....+. .++..+-+++|.+ ..+.|+.+-...-.++|.++. ...+...
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence 5568999999884321 112222 3556789999999 555666666665566665543 2222111
Q ss_pred ---c----cCCCeeEEEEcCCCc-EEEEEc-CCeEEEEECCCCCcccCCeEEecC-------CCCeEEEEEccCCCeEEE
Q 036953 177 ---D----FYRPIASIAFHAEGE-LLAVAS-GHKLYIWPYNNKEEASSPIIVLKT-------RRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 177 ---~----h~s~V~sVafSpdG~-~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h-------~~sVtsVafSPdG~~Lla 240 (792)
. .-..+.+++++|... +++.+. +..|.++|. .++... ...+... -..--.|+|.++|+ |.+
T Consensus 161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~-~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYI 237 (248)
T PF06977_consen 161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVS-SLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYI 237 (248)
T ss_dssp HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEE-EEE-STTGGG-SS---SEEEEEE-TT---EEE
T ss_pred cccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEE-EEEeCCcccCcccccCCccEEEECCCCC-EEE
Confidence 1 234578999998764 444444 344888884 444222 1111110 12456899999997 444
Q ss_pred EE
Q 036953 241 TA 242 (792)
Q Consensus 241 S~ 242 (792)
++
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 44
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=1.4 Score=52.91 Aligned_cols=102 Identities=3% Similarity=-0.050 Sum_probs=60.6
Q ss_pred CCCCcEEEEEccCCCCEEEEEe------CCCe--EEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCC-e-EEEE
Q 036953 136 HRRTPWVVRFHPLRSEILASGS------LDHE--VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGH-K-LYIW 205 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaSgS------~Dgt--VrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd-~-V~IW 205 (792)
....+...+++| +++.++... .|+. |.+++.. +.. ..+........-.|+|+|+.|++..++ . +++.
T Consensus 348 ~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEe
Confidence 334678899999 777766654 2444 4444542 222 233223347889999999888777643 2 3333
Q ss_pred ECCCCCccc-------CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 206 PYNNKEEAS-------SPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 206 Dlrt~~~~~-------~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+........ .... .....|..+.|+|||.++++..
T Consensus 425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE
Confidence 322111110 0000 2245799999999999998766
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.34 Score=55.06 Aligned_cols=137 Identities=11% Similarity=0.052 Sum_probs=102.2
Q ss_pred eCCCeEEEEeccCC--C----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------CcEE---------EEec
Q 036953 76 VEAESLRHLSAKYC--P----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT------GNCL---------KVLS 134 (792)
Q Consensus 76 s~d~sIrvWd~~t~--~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t------gk~v---------~~L~ 134 (792)
.+++.+.++|.... + -.-|..+|.++.+++.+..+++....|.|.-|.... .+.. ..+.
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~ 198 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP 198 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccc
Confidence 35566777776432 1 235889999999999999999999999999999762 1111 1223
Q ss_pred CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecc---------------------------------C-C
Q 036953 135 GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF---------------------------------Y-R 180 (792)
Q Consensus 135 gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h---------------------------------~-s 180 (792)
..+...+++.|+| ++..+.+-+.|..|++++.++++.++.++. . .
T Consensus 199 K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~ 277 (558)
T KOG0882|consen 199 KAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST 277 (558)
T ss_pred ccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc
Confidence 3456788999999 999999999999999999999876554410 0 1
Q ss_pred CeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcc
Q 036953 181 PIASIAFHAEGELLAVASGHKLYIWPYNNKEEA 213 (792)
Q Consensus 181 ~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~ 213 (792)
.-..+.|...|++|+-++--+|++.++.+....
T Consensus 278 ~~~~~~fdes~~flly~t~~gikvin~~tn~v~ 310 (558)
T KOG0882|consen 278 VGTNAVFDESGNFLLYGTILGIKVINLDTNTVV 310 (558)
T ss_pred ccceeEEcCCCCEEEeecceeEEEEEeecCeEE
Confidence 224567888899999888667999999888753
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.88 E-value=3.1 Score=44.44 Aligned_cols=154 Identities=12% Similarity=0.046 Sum_probs=84.7
Q ss_pred CcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC-CeEEEEE-CCCCCcccC
Q 036953 139 TPWVVRFHPLRSEILASGS-LDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIWP-YNNKEEASS 215 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS-~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd-d~V~IWD-lrt~~~~~~ 215 (792)
.+...++++ +++.++... .++.-.||-...+...........+....|++++...++... ...+++. ...++....
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688899999 777666555 333334443344443333334457888899999887777653 3355553 333332210
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCc
Q 036953 216 PIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPF 295 (792)
Q Consensus 216 ~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~ 295 (792)
..........|..+.++|||.++++.....+= ..+.+ -.+....+|.-..+.....+......
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~----~~v~v-------------a~V~r~~~g~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGG----GRVYV-------------AGVVRDGDGVPRRLTGPRRVAPPLLS 166 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCC----CeEEE-------------EEEEeCCCCCcceeccceEecccccC
Confidence 11111112289999999999999887743210 00000 11111112212233333333333456
Q ss_pred eEEEeEECCCCcEEE
Q 036953 296 LIVPSVSIDDSRIDL 310 (792)
Q Consensus 296 ~VwdV~~SpDGr~lv 310 (792)
.+.++.+.+++++++
T Consensus 167 ~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 167 DVTDVAWSDDSTLVV 181 (253)
T ss_pred cceeeeecCCCEEEE
Confidence 788999999999988
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.02 Score=67.02 Aligned_cols=152 Identities=15% Similarity=0.177 Sum_probs=101.6
Q ss_pred CCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcE--EEEecCCCCCcEEEEEccCCCCEEEEEe----CCCeEEEEEC
Q 036953 96 RSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTGNC--LKVLSGHRRTPWVVRFHPLRSEILASGS----LDHEVRLWDA 167 (792)
Q Consensus 96 ~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tgk~--v~~L~gH~~~VtsVafSP~dg~lLaSgS----~DgtVrLWDl 167 (792)
..+.|++++- |...++.|..+|.|.+-.+....- -....+|....++++|++.|.++|+.|- .|..++|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4477887766 445788999999999988754321 2345678899999999997778888773 3557999999
Q ss_pred CCC--cEEEEec----cCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCCCCeEEEEEcc-CCCeEE
Q 036953 168 NTS--ECIGSCD----FYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP-HAAPFV 239 (792)
Q Consensus 168 ~tg--~~v~t~~----h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP-dG~~Ll 239 (792)
.++ .+..... ......+++|..+.+++.+|... .++++|++...... ..-....+..+...| .+.++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~----~svnTk~vqG~tVdp~~~nY~- 211 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV----SSVNTKYVQGITVDPFSPNYF- 211 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh----hhhhhhhcccceecCCCCCce-
Confidence 986 3332221 33456689999888888888855 49999998543211 111123455666777 45544
Q ss_pred EEEeeCccccCCC
Q 036953 240 LTAEVNDLDSSDS 252 (792)
Q Consensus 240 aS~s~~dLrs~d~ 252 (792)
++..+.++..||.
T Consensus 212 cs~~dg~iAiwD~ 224 (783)
T KOG1008|consen 212 CSNSDGDIAIWDT 224 (783)
T ss_pred eccccCceeeccc
Confidence 4444666666664
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.3 Score=52.18 Aligned_cols=141 Identities=12% Similarity=0.147 Sum_probs=87.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC---CCCEEEEEeCCCeEEEEE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTH---GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL---RSEILASGSLDHEVRLWD 166 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS---~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~---dg~lLaSgS~DgtVrLWD 166 (792)
.--.+|..++|. ||+.++-.. .+|.+++=| .+.+..| .-|.++.|.|- +...++..-..+-|.+|.
T Consensus 17 qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 17 QAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred hhhccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 334578899997 787665442 234444333 2334444 46889999982 233566667788999998
Q ss_pred CCC-----CcEEEE----eccCC--CeeEEEEcCCCcEEEEEcCCeE-EEEECCCCCcccCCeEEecCCCCeEEEEEccC
Q 036953 167 ANT-----SECIGS----CDFYR--PIASIAFHAEGELLAVASGHKL-YIWPYNNKEEASSPIIVLKTRRSLRAVHFHPH 234 (792)
Q Consensus 167 l~t-----g~~v~t----~~h~s--~V~sVafSpdG~~LasgSdd~V-~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPd 234 (792)
+.- .+.+.. +...- --..+.|||....|++-....+ .+++++..... ........+-|.+.+|.+|
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr--VkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR--VKADIKTSGLIHCACWTKD 166 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce--EEEeccCCceEEEEEecCc
Confidence 862 222221 11111 2347889999999888764444 44555443321 1233457788999999999
Q ss_pred CCeEEEEEe
Q 036953 235 AAPFVLTAE 243 (792)
Q Consensus 235 G~~LlaS~s 243 (792)
|++|+++.+
T Consensus 167 G~RLVVAvG 175 (671)
T PF15390_consen 167 GQRLVVAVG 175 (671)
T ss_pred CCEEEEEeC
Confidence 999988765
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.19 E-value=11 Score=41.75 Aligned_cols=145 Identities=15% Similarity=0.198 Sum_probs=90.8
Q ss_pred CCeEEEEEcCCCCEEEEEEC-----C----CeEEEEECC-CCcEEEEecCCCCCcEEEEEccCCCCEEEEE-eCCCeEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHG-----D----HTVKIIDCQ-TGNCLKVLSGHRRTPWVVRFHPLRSEILASG-SLDHEVRL 164 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~-----D----GtVrIWDl~-tgk~v~~L~gH~~~VtsVafSP~dg~lLaSg-S~DgtVrL 164 (792)
...+.+...|+|.+.++... . ..-.||-+. .+..++.+.++-..-++++|+| |++.|+.+ +..+.|.-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEE
Confidence 34667888899887765443 1 112455544 5677777777777778999999 77665555 45578888
Q ss_pred EECCC--C----cEEEE-e-ccCCCeeEEEEcCCCcEEEEEc-CC-eEEEEECCCCCcccCCeEEecCCCCeEEEEE-cc
Q 036953 165 WDANT--S----ECIGS-C-DFYRPIASIAFHAEGELLAVAS-GH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHF-HP 233 (792)
Q Consensus 165 WDl~t--g----~~v~t-~-~h~s~V~sVafSpdG~~LasgS-dd-~V~IWDlrt~~~~~~~~~~~~h~~sVtsVaf-SP 233 (792)
|++.. + +.... + ...+..-.++...+|.+.+++. ++ +|.+|+.. ++... ...-....+++++| .|
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~---~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG---EIKLPVKRPTNPAFGGP 265 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE---EEECCCCCCccceEeCC
Confidence 87752 1 11111 1 1345566788888898876544 33 69999988 55432 22223366777777 45
Q ss_pred CCCeEEEEEeeC
Q 036953 234 HAAPFVLTAEVN 245 (792)
Q Consensus 234 dG~~LlaS~s~~ 245 (792)
+.+.|++++...
T Consensus 266 ~~~~L~iTs~~~ 277 (307)
T COG3386 266 DLNTLYITSARS 277 (307)
T ss_pred CcCEEEEEecCC
Confidence 567777766543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.19 E-value=8 Score=43.68 Aligned_cols=163 Identities=15% Similarity=0.070 Sum_probs=90.2
Q ss_pred CeEEEEeccCCCcCCC--CCC-eEEEEEcCCCCEEEEEECCC-----------eEEEEECCCCcE--EEEecCCCCC--c
Q 036953 79 ESLRHLSAKYCPLVPP--PRS-TIAAAFSPDGRTLASTHGDH-----------TVKIIDCQTGNC--LKVLSGHRRT--P 140 (792)
Q Consensus 79 ~sIrvWd~~t~~L~gH--~~~-V~sLafSPDG~~LaSGS~DG-----------tVrIWDl~tgk~--v~~L~gH~~~--V 140 (792)
..++++|+.++++..- ... ...+.|.+|++.|+....+. .|++|++.+... ...|...... .
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~ 229 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWF 229 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSE
T ss_pred EEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEE
Confidence 3488888887754321 111 12399999999887776443 378888877643 3556554443 4
Q ss_pred EEEEEccCCCCEEEEEe-C--C-CeEEEEECCCC-----cEEEEeccCCCe-eEEEEcCCCcEEEEEcC----CeEEEEE
Q 036953 141 WVVRFHPLRSEILASGS-L--D-HEVRLWDANTS-----ECIGSCDFYRPI-ASIAFHAEGELLAVASG----HKLYIWP 206 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS-~--D-gtVrLWDl~tg-----~~v~t~~h~s~V-~sVafSpdG~~LasgSd----d~V~IWD 206 (792)
..+..++ ++++++... . + ..+.+.|+..+ +..........+ ..+... .+.+++...+ ++|...+
T Consensus 230 ~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~ 307 (414)
T PF02897_consen 230 VSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVD 307 (414)
T ss_dssp EEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEE
T ss_pred EEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEec
Confidence 6788888 777766543 2 2 35788888875 344444444444 344443 5555554432 3477788
Q ss_pred CCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 207 YNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 207 lrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+...........+..+...+.-..+...+++|++.-.
T Consensus 308 l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 308 LADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp TTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred ccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence 8777642212244455554444444556777776554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=93.17 E-value=7.7 Score=42.07 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCEEEEEECCC--eEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 98 TIAAAFSPDGRTLASTHGDH--TVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DG--tVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
...+.|..+|..+-+.+.-| .|+.+|+.+++...... ...-.--+++... +++..-.=.++...+||..+-+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEEE
Confidence 55788877888777877665 69999999998765544 2233445566653 4455555578899999999999998
Q ss_pred EeccCCCeeEEEEcCCCcEEEE-EcCCeEEEEECCCCCc
Q 036953 175 SCDFYRPIASIAFHAEGELLAV-ASGHKLYIWPYNNKEE 212 (792)
Q Consensus 175 t~~h~s~V~sVafSpdG~~Las-gSdd~V~IWDlrt~~~ 212 (792)
++.....-+.++ .|++.|+. -+.++|+.+|..+.+.
T Consensus 125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred EEecCCcceEEE--cCCCEEEEECCccceEEECCcccce
Confidence 887766667777 34544444 4466799999876653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.14 E-value=3.7 Score=43.89 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE-CCCCcE
Q 036953 97 STIAAAFSPDGRTLASTH---GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD-ANTSEC 172 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS---~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD-l~tg~~ 172 (792)
.+...++++|++.++... ....++++.. +.....+. ....+..-.|++ ++.+.+....+...+++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence 588999999999887655 2334555543 33333321 223778889999 666666666566666663 333332
Q ss_pred EE-Ee--c-cCCCeeEEEEcCCCcEEEEEc----CCeEEEEECCCCCcc-----cCCeEEe-cCCCCeEEEEEccCCCeE
Q 036953 173 IG-SC--D-FYRPIASIAFHAEGELLAVAS----GHKLYIWPYNNKEEA-----SSPIIVL-KTRRSLRAVHFHPHAAPF 238 (792)
Q Consensus 173 v~-t~--~-h~s~V~sVafSpdG~~LasgS----dd~V~IWDlrt~~~~-----~~~~~~~-~h~~sVtsVafSPdG~~L 238 (792)
.. .. . ....|..+.++|||..++.-. +++|++--+.+.... ..+.... .....++.+.|.+++..+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 21 12 1 222899999999998877765 455777766433222 1122222 235689999999999855
Q ss_pred EEEEe
Q 036953 239 VLTAE 243 (792)
Q Consensus 239 laS~s 243 (792)
+.+..
T Consensus 181 V~~~~ 185 (253)
T PF10647_consen 181 VLGRS 185 (253)
T ss_pred EEeCC
Confidence 55443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=92.97 E-value=20 Score=40.88 Aligned_cols=137 Identities=16% Similarity=0.205 Sum_probs=78.4
Q ss_pred EEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecc
Q 036953 102 AFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF 178 (792)
Q Consensus 102 afSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h 178 (792)
+|.+||++|+.++. ...+.+.|+.+++..+.-.+-.....+..+++ +.+.++-....+.|+-.|+.+++....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 56789988776665 45677779998886655443323233567788 667777666778999999999877666643
Q ss_pred C-CCeeEEEE--cCCCcEEEEEc----C-------------------CeEEEEECCCCCcccCCeEEecCCCCeEEEEEc
Q 036953 179 Y-RPIASIAF--HAEGELLAVAS----G-------------------HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFH 232 (792)
Q Consensus 179 ~-s~V~sVaf--SpdG~~LasgS----d-------------------d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafS 232 (792)
. ..+-...| +.|+..++..- + .+|...|+++++. ..+......+.-+.|+
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~----~~v~~~~~wlgH~~fs 196 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER----KVVFEDTDWLGHVQFS 196 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E----EEEEEESS-EEEEEEE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce----eEEEecCccccCcccC
Confidence 3 33333555 34555554331 0 1367778877663 3455567889999999
Q ss_pred cCCCeEEEEEe
Q 036953 233 PHAAPFVLTAE 243 (792)
Q Consensus 233 PdG~~LlaS~s 243 (792)
|....+++=|.
T Consensus 197 P~dp~li~fCH 207 (386)
T PF14583_consen 197 PTDPTLIMFCH 207 (386)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCCCEEEEec
Confidence 98888877665
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=92.93 E-value=21 Score=40.97 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=92.2
Q ss_pred CCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---c--CCCCCCe-----EEEEEcCCC
Q 036953 38 SPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---L--VPPPRST-----IAAAFSPDG 107 (792)
Q Consensus 38 s~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L--~gH~~~V-----~sLafSPDG 107 (792)
...++.+.+..|.. ++++.-+ |.....|+....++.+++++..... + .-....| ....+..+|
T Consensus 67 s~sG~ll~~i~w~~-~~iv~~~------wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 67 SSSGKLLSSIPWDS-GRIVGMG------WTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred CCCCCEeEEEEECC-CCEEEEE------ECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 34455677888877 5555444 5667888888999999999885222 1 0111122 222333345
Q ss_pred CEEEEEECCCeEEEEECCCCc-EEEEec---CCCC------CcEE-EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 108 RTLASTHGDHTVKIIDCQTGN-CLKVLS---GHRR------TPWV-VRFHPLRSEILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk-~v~~L~---gH~~------~Vts-VafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
-.+++ .++.+.+.+-.... ..+.+. .... .... ..++. +....+....++.+.+.+-...+. +
T Consensus 140 ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc---c
Confidence 33333 34444443322211 111111 1000 0000 12232 333344444444555333222111 3
Q ss_pred ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 177 DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 177 ~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
...+++..++.||+|+++|.-.+ +.+.+.+..-.+... ............+.|.-+..
T Consensus 214 ~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~--e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 214 DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLC--EFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeE--EeecCcCCCCcEEEEECCCc
Confidence 33568999999999999988774 458787764443221 11122235567788875543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=92.78 E-value=1.9 Score=47.13 Aligned_cols=135 Identities=9% Similarity=0.119 Sum_probs=78.1
Q ss_pred CCEEEEEEC----------CCeEEEEECCCC----cEEEEe--cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 107 GRTLASTHG----------DHTVKIIDCQTG----NCLKVL--SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 107 G~~LaSGS~----------DGtVrIWDl~tg----k~v~~L--~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
-.+|++|.. .|.|.++++... ..+..+ ....++|++++--. +.++++ ..+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~--~~lv~~--~g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN--GRLVVA--VGNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET--TEEEEE--ETTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC--CEEEEe--ecCEEEEEEccCc
Confidence 456777653 288999999874 122222 23578899988653 443333 3588999999887
Q ss_pred c-EEEEec--cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc
Q 036953 171 E-CIGSCD--FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 171 ~-~v~t~~--h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
+ ....-. ....+.++... ++++++|. .+.+.++.++.....-...........++++.|-++++.++++....+
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 7 444433 34456666554 56888887 444666654432211111222334567899999877776666555444
Q ss_pred c
Q 036953 247 L 247 (792)
Q Consensus 247 L 247 (792)
+
T Consensus 196 l 196 (321)
T PF03178_consen 196 L 196 (321)
T ss_dssp E
T ss_pred E
Confidence 3
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=22 Score=43.71 Aligned_cols=183 Identities=12% Similarity=-0.010 Sum_probs=91.1
Q ss_pred eeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc--CCCCCCeEEEEEcCCCCEEEEEECC-----
Q 036953 44 VPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL--VPPPRSTIAAAFSPDGRTLASTHGD----- 116 (792)
Q Consensus 44 V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L--~gH~~~V~sLafSPDG~~LaSGS~D----- 116 (792)
+....|+|++++++.+. +. .+.+...|++.+..++.. ......-..++|.+|++.|+....+
T Consensus 129 l~~~~~Spdg~~la~~~------d~-----~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~ 197 (686)
T PRK10115 129 LGGMAITPDNTIMALAE------DF-----LSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLL 197 (686)
T ss_pred EeEEEECCCCCEEEEEe------cC-----CCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCC
Confidence 44455666666554441 10 112233466777765541 1122222569999999887766543
Q ss_pred -CeEEEEECCCC--cEEEEecCCCCCcEEEEEccCCCCEEEEEe---CCCeEEEEECC--CCcEEEEeccC-CCeeEEEE
Q 036953 117 -HTVKIIDCQTG--NCLKVLSGHRRTPWVVRFHPLRSEILASGS---LDHEVRLWDAN--TSECIGSCDFY-RPIASIAF 187 (792)
Q Consensus 117 -GtVrIWDl~tg--k~v~~L~gH~~~VtsVafSP~dg~lLaSgS---~DgtVrLWDl~--tg~~v~t~~h~-s~V~sVaf 187 (792)
..|+.+++.++ +-...+........-..+.+.++++++..+ .++.+.+|+.. +++....+... .....+.
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 276 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD- 276 (686)
T ss_pred CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-
Confidence 36888888887 444455543333332233333666655443 34578888853 34433333322 2223333
Q ss_pred cCCCcEEEEEcCC----eEEEEECCCCCcccCCeEEecC--CCCeEEEEEccCCCeEEEEEe
Q 036953 188 HAEGELLAVASGH----KLYIWPYNNKEEASSPIIVLKT--RRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 188 SpdG~~LasgSdd----~V~IWDlrt~~~~~~~~~~~~h--~~sVtsVafSPdG~~LlaS~s 243 (792)
+..+.+++....+ +|...++..... ...+..+ ...|..+.+. ++.|+++..
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~---~~~l~~~~~~~~i~~~~~~--~~~l~~~~~ 333 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQ---WEELIPPRENIMLEGFTLF--TDWLVVEER 333 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCccc---CeEEECCCCCCEEEEEEEE--CCEEEEEEE
Confidence 3334444333321 244445543221 1223333 3367777776 555666554
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=92.73 E-value=4.2 Score=38.53 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=49.9
Q ss_pred cEEEEEcc---CCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEEC
Q 036953 140 PWVVRFHP---LRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPY 207 (792)
Q Consensus 140 VtsVafSP---~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDl 207 (792)
|+++++.. +..+.|+.|+.|..||+|+- .+.+..+.-.+.+.+++-...+++.+.-.+++|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 55666554 23478999999999999975 46788888889999999887766555555777888875
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.24 Score=59.81 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=81.4
Q ss_pred eeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc--CCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 036953 44 VPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL--VPPPRSTIAAAFSPDGRTLASTHGDHTVKI 121 (792)
Q Consensus 44 V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L--~gH~~~V~sLafSPDG~~LaSGS~DGtVrI 121 (792)
.+-..|+|...+++... ++-...+++.++--...+- ...+-.+.+++|+|..-.|++|-.-|.+.+
T Consensus 18 sti~SWHPsePlfAVA~------------fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVAS------------FSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDV 85 (1416)
T ss_pred ccccccCCCCceeEEEE------------ecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEE
Confidence 34457998887765542 2223344455442211110 111223668999998889999999999999
Q ss_pred EECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 122 IDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 122 WDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
|..++.+.-.....|..+|..+.|++ ++..++|+..-|.|.+|.+.
T Consensus 86 ~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 86 QKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 99988776666668999999999999 99999999999999999765
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.67 Score=57.83 Aligned_cols=145 Identities=11% Similarity=0.064 Sum_probs=93.1
Q ss_pred CeEEEEEcCCCCEEEEE--ECCCeEEEEECCCCcE-----EEEec------CCCCCcEEEEEccCCCCEEEEEeCCCeEE
Q 036953 97 STIAAAFSPDGRTLAST--HGDHTVKIIDCQTGNC-----LKVLS------GHRRTPWVVRFHPLRSEILASGSLDHEVR 163 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSG--S~DGtVrIWDl~tgk~-----v~~L~------gH~~~VtsVafSP~dg~lLaSgS~DgtVr 163 (792)
.+..+..++|+...++. +++-.|..||+.+-.. ..-|. .......++.|+|.=....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 46667777787655443 4445788999864321 11111 23345677889985455566777899888
Q ss_pred EEECCCC-cEEEEeccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCC--CcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 164 LWDANTS-ECIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNK--EEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 164 LWDl~tg-~~v~t~~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~--~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
+..+... +.+..+......++++|+|.|+.++.|-. +++.-|-..-. ..+..+-. .....|.+|+|--...+++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~--~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPV--EENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCc--CCCcceeEEEEecceeEEE
Confidence 8877643 33344567788999999999999999984 44666654332 22211111 1257899999998888776
Q ss_pred EEEe
Q 036953 240 LTAE 243 (792)
Q Consensus 240 aS~s 243 (792)
+-+.
T Consensus 260 vy~n 263 (1405)
T KOG3630|consen 260 VYGN 263 (1405)
T ss_pred Eecc
Confidence 6443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.70 E-value=12 Score=41.45 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=73.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCC--C----cE-EEEecCCCCCcEEEEEccCCCCEEEEEeCCC-eEE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGD-HTVKIIDCQT--G----NC-LKVLSGHRRTPWVVRFHPLRSEILASGSLDH-EVR 163 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~D-GtVrIWDl~t--g----k~-v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg-tVr 163 (792)
++-..-+.++||||++.|+.+... +.|.-|++.. + +. ...+..+.+..-+++... ++.+.+++..++ .|.
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~ 238 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVV 238 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEE
Confidence 344556799999999999888664 7788777752 1 11 222334567777888887 888776555554 899
Q ss_pred EEECCCCcEEEEeccC-CCeeEEEEc-CCCcEEEEEc
Q 036953 164 LWDANTSECIGSCDFY-RPIASIAFH-AEGELLAVAS 198 (792)
Q Consensus 164 LWDl~tg~~v~t~~h~-s~V~sVafS-pdG~~LasgS 198 (792)
.|+.. ++.+..+... ..+++++|- ++.+.|++.+
T Consensus 239 ~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 99998 8888888655 778888884 5556665555
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.70 E-value=24 Score=38.83 Aligned_cols=168 Identities=18% Similarity=0.185 Sum_probs=99.0
Q ss_pred ecCCcEEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcC-CCCEEEEEECCCe-EEEEECCCCcEEEEecCCCC--CcE
Q 036953 66 RDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSP-DGRTLASTHGDHT-VKIIDCQTGNCLKVLSGHRR--TPW 141 (792)
Q Consensus 66 ~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSP-DG~~LaSGS~DGt-VrIWDl~tgk~v~~L~gH~~--~Vt 141 (792)
+|+...++...+++++..--. -......|+|+| ....++.+-.-|+ ..++|.+..+...++...++ .--
T Consensus 45 ~dgs~g~a~~~eaGk~v~~~~-------lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyG 117 (366)
T COG3490 45 RDGSFGAATLSEAGKIVFATA-------LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYG 117 (366)
T ss_pred cCCceeEEEEccCCceeeeee-------cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeec
Confidence 455556666666665432111 123344677887 3445555555454 56888887765544432111 112
Q ss_pred EEEEccCCCCEEEEEeCC-----CeEEEEECCCC-cEEEEec-cCCCeeEEEEcCCCcEEEEEcCC--------------
Q 036953 142 VVRFHPLRSEILASGSLD-----HEVRLWDANTS-ECIGSCD-FYRPIASIAFHAEGELLAVASGH-------------- 200 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~D-----gtVrLWDl~tg-~~v~t~~-h~s~V~sVafSpdG~~LasgSdd-------------- 200 (792)
.-+|+| |+.+|...-.| |.|-+||.+.+ +.+..+. |.-....+.|.+||+.++.+..+
T Consensus 118 HGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 118 HGVFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred ccccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence 246899 99988876554 67889999854 3344442 55556789999999999988642
Q ss_pred -----eEEEEECCCCCcccCCeEEe--cCCCCeEEEEEccCCCeEEEEEe
Q 036953 201 -----KLYIWPYNNKEEASSPIIVL--KTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 201 -----~V~IWDlrt~~~~~~~~~~~--~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.+.+.|..+++.+. ...+. .+.-+|..++..+||. +.+.|.
T Consensus 197 dsMePSlvlld~atG~lie-kh~Lp~~l~~lSiRHld~g~dgt-vwfgcQ 244 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIE-KHTLPASLRQLSIRHLDIGRDGT-VWFGCQ 244 (366)
T ss_pred hhcCccEEEEeccccchhh-hccCchhhhhcceeeeeeCCCCc-EEEEEE
Confidence 13334434444332 11111 2455788999999998 555554
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.4 Score=51.37 Aligned_cols=134 Identities=12% Similarity=0.101 Sum_probs=88.9
Q ss_pred CCCEEE-EEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC-------EEEEEeCCCeEEEEECCCCcE--EEE
Q 036953 106 DGRTLA-STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE-------ILASGSLDHEVRLWDANTSEC--IGS 175 (792)
Q Consensus 106 DG~~La-SGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~-------lLaSgS~DgtVrLWDl~tg~~--v~t 175 (792)
+.+.|+ ++.....++-.|+..|+.+....-|.. |.-+.+.| +.+ .-+.|-.|+.|.-||.+-... +..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 444444 455556788889999999888876665 77777877 321 223455688899999984321 111
Q ss_pred -----eccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 176 -----CDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 176 -----~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+.......|.+-.-+| ++++|+ ++.|++||- .+... ...+.+-..+|..|..+.+|++|+++|..+
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~A--KTAlPgLG~~I~hVdvtadGKwil~Tc~ty 493 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRA--KTALPGLGDAIKHVDVTADGKWILATCKTY 493 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhh--hhcccccCCceeeEEeeccCcEEEEecccE
Confidence 1233445566655555 566666 666999997 33322 234455678999999999999999999844
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=91.53 E-value=3.3 Score=49.93 Aligned_cols=110 Identities=14% Similarity=0.142 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEcc-CCCCEEEEEeCCCeEEEEECC-----CC
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHP-LRSEILASGSLDHEVRLWDAN-----TS 170 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP-~dg~lLaSgS~DgtVrLWDl~-----tg 170 (792)
..-+.-|.-++..++-+...++.|||...+.....-. ...+.|.++.|.. .+++.+++.+-.+.|.++.-. +.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3344444444444444445679999998876443222 4578899999964 378889999999999998542 11
Q ss_pred ----cEEEEe---cc-CCCeeEEEEcCCCcEEEEEcCCeEEEEECC
Q 036953 171 ----ECIGSC---DF-YRPIASIAFHAEGELLAVASGHKLYIWPYN 208 (792)
Q Consensus 171 ----~~v~t~---~h-~s~V~sVafSpdG~~LasgSdd~V~IWDlr 208 (792)
.+++.+ .+ ..+|.+..|.++|.+++.+ ++.++|+|-.
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 234443 23 3689999999998765554 4669998753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.8 Score=50.52 Aligned_cols=135 Identities=19% Similarity=0.183 Sum_probs=85.3
Q ss_pred EEEEeCCCeEEEEeccCCCcCC---CCCCeEEEEEcCCCC--EE-----EEEECCCeEEEEECCCCc--EEEEecCCC--
Q 036953 72 LVSWVEAESLRHLSAKYCPLVP---PPRSTIAAAFSPDGR--TL-----ASTHGDHTVKIIDCQTGN--CLKVLSGHR-- 137 (792)
Q Consensus 72 L~S~s~d~sIrvWd~~t~~L~g---H~~~V~sLafSPDG~--~L-----aSGS~DGtVrIWDl~tgk--~v~~L~gH~-- 137 (792)
+.+......|...|++.+++.. ..+.|+-+.+.|+.+ .+ +.|-.|..|.-||.+-.. .+..-++|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 3444445556666666554321 122377777777543 22 445567889999976322 233333332
Q ss_pred --CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECC
Q 036953 138 --RTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHKLYIWPYN 208 (792)
Q Consensus 138 --~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~IWDlr 208 (792)
....|.+-. ...+++.||.+|.|||||--..+....+ ....+|..|..+.+|++|+..++..|.+.|+.
T Consensus 429 ~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 429 TKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred cccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 223344433 5678999999999999997332222223 47789999999999999999998887777764
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.22 E-value=6.2 Score=44.32 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=57.3
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--Cc--EEEEecCCCCCcEEEEEccCCCCEEEEEeCC
Q 036953 96 RSTIAAAFSPDGRTLASTH-----------GDH-TVKIIDCQT--GN--CLKVLSGHRRTPWVVRFHPLRSEILASGSLD 159 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS-----------~DG-tVrIWDl~t--gk--~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D 159 (792)
.....|+|.++|+.+++-. ..+ .|.+++-.. |+ ....|...-....+++|.+ ++ ++++ ..+
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe-CCC
Confidence 3466889999998776642 123 677665432 33 2344544445678899988 66 5554 444
Q ss_pred CeEEEEECCCC-----cE--E-EEecc-----CCCeeEEEEcCCCcEEEEEc
Q 036953 160 HEVRLWDANTS-----EC--I-GSCDF-----YRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 160 gtVrLWDl~tg-----~~--v-~t~~h-----~s~V~sVafSpdG~~LasgS 198 (792)
...++.|.... +. + ..+.. ......+.|.|||.+.++-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 43344455321 21 1 11222 24477899999998766544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.78 E-value=6.2 Score=42.67 Aligned_cols=104 Identities=12% Similarity=0.035 Sum_probs=75.5
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCee-EEE
Q 036953 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIA-SIA 186 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~-sVa 186 (792)
.+++.|+-.+.+.--|..+|+.++.-. -...|.+-+.- -+++++.|...+.+++.+.++|...+.+.....|. ...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 456777888888888999998766533 22333332222 25679999999999999999998888876444433 234
Q ss_pred EcCCCcEEEEEcCC-eEEEEECCCCCccc
Q 036953 187 FHAEGELLAVASGH-KLYIWPYNNKEEAS 214 (792)
Q Consensus 187 fSpdG~~LasgSdd-~V~IWDlrt~~~~~ 214 (792)
..+++..+..++.+ ..+..|.++...+.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEE
Confidence 47889999999954 49999999888654
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.72 Score=36.89 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC 129 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~ 129 (792)
...|.+++|+|....||.+..||.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=90.21 E-value=10 Score=42.00 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=74.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-Cc
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-SE 171 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-g~ 171 (792)
+-...+..+..++||++++++..-....-||--...-...-..-...|..+.|.| ++.+.+. ...+.|+.=+... .+
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~-~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWML-ARGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEE-ETTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEE-eCCcEEEEccCCCCcc
Confidence 4456788999999999988886665566777432211111223567899999999 7666554 4888888887222 22
Q ss_pred EEEE----ec-cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 172 CIGS----CD-FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 172 ~v~t----~~-h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
.... +. ..-.+..++|.+++...++++++. .+.....++..+.......-...++.+.|..+.+-++
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCcc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence 1111 11 223478999999999999888774 3444445543220001112245688899976655443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=90.18 E-value=4 Score=47.03 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=80.1
Q ss_pred CeEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEEC--------------------CCeEEEEECCCCcEEEEecCC-C
Q 036953 79 ESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHG--------------------DHTVKIIDCQTGNCLKVLSGH-R 137 (792)
Q Consensus 79 ~sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS~--------------------DGtVrIWDl~tgk~v~~L~gH-~ 137 (792)
+.+..|+.... ...--+.+-|.|.-+.++|... -.++.+||+.+.+.++++.-- .
T Consensus 168 ~v~g~We~~~~----~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 168 EVKGRWEKDRG----PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp -EEEE--SB-T----T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccceeccCCC----CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 44556654321 1234567778887777777642 368999999999999888632 2
Q ss_pred -CCcEEEEEcc--CCCCEEEEEeCCCeEEEEEC-CCCcEE----EEec---c---------------CCCeeEEEEcCCC
Q 036953 138 -RTPWVVRFHP--LRSEILASGSLDHEVRLWDA-NTSECI----GSCD---F---------------YRPIASIAFHAEG 191 (792)
Q Consensus 138 -~~VtsVafSP--~dg~lLaSgS~DgtVrLWDl-~tg~~v----~t~~---h---------------~s~V~sVafSpdG 191 (792)
..+..++|.. ....-++.+....+|..|-- ..++.. ..+. . ..-|+.|..|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 2455677753 22233455555556655533 343221 1111 0 2347899999999
Q ss_pred cEEEEEc--CCeEEEEECCCCCcccCCeE-EecC---------------CCCeEEEEEccCCCeEEEEEeeCc
Q 036953 192 ELLAVAS--GHKLYIWPYNNKEEASSPII-VLKT---------------RRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 192 ~~LasgS--dd~V~IWDlrt~~~~~~~~~-~~~h---------------~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
++|.++. ++.|+.||+......+..-. ..+. .+...-|..|.||++|.+|.+++.
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSLys 396 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNSLYS 396 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE----H
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEeeccc
Confidence 9999998 67799999987765431111 1111 112367889999999999999653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=88.67 E-value=22 Score=41.64 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=64.8
Q ss_pred EEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEE------------------eCCCeEEEEECCCC
Q 036953 109 TLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASG------------------SLDHEVRLWDANTS 170 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSg------------------S~DgtVrLWDl~tg 170 (792)
.++.++.+|.+...|..+|+.+....... ..+..+| ..++.+ ..++.+...|+.++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 57788889999999999999988765211 1123333 233322 24678999999999
Q ss_pred cEEEEeccC---------CCe--eEEEEcCCCcEEEEEc-CCeEEEEECCCCCccc
Q 036953 171 ECIGSCDFY---------RPI--ASIAFHAEGELLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 171 ~~v~t~~h~---------s~V--~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
+.++..... .+. ..+. -.+..|++++ ++.|+.+|.++++...
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceee
Confidence 988887543 111 1122 2456666666 6679999999998653
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.43 E-value=2.2 Score=45.08 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=64.2
Q ss_pred eecCCcEEEEEeCCCeEEEEeccCC-C----cCCCCCCeEEEEE-cCCCCEEEEEECCCeEEEEECCCCcEEEEecCCC-
Q 036953 65 VRDAKRGLVSWVEAESLRHLSAKYC-P----LVPPPRSTIAAAF-SPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHR- 137 (792)
Q Consensus 65 v~d~~~~L~S~s~d~sIrvWd~~t~-~----L~gH~~~V~sLaf-SPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~- 137 (792)
+..+...++.+..++.+.+|+.... . ...-...|.++-- -.++.+..++..|+.|+.|++.-++.+.....|+
T Consensus 66 v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 66 VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred ecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC
Confidence 3345667888888999998887611 1 1111222333322 2256688899999999999999888777776676
Q ss_pred CCcEEEEEccCCCCEEEEE--eCCCeEEEEECCC
Q 036953 138 RTPWVVRFHPLRSEILASG--SLDHEVRLWDANT 169 (792)
Q Consensus 138 ~~VtsVafSP~dg~lLaSg--S~DgtVrLWDl~t 169 (792)
..+....... .+..++.. |.|..++.|++..
T Consensus 146 ~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 3443333333 34455555 5556666666543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.10 E-value=1.3 Score=55.07 Aligned_cols=70 Identities=24% Similarity=0.368 Sum_probs=54.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE---ccCCCCEEEEEeCCCeEEEEEC
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF---HPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf---SP~dg~lLaSgS~DgtVrLWDl 167 (792)
..+|++++|+.||+.++.|-.+|.|.+||...++..+.+..|..+.+++-+ .. ++..++++..-|. +|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 467999999999999999999999999999999999998877776666543 33 4456666655554 4543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.84 E-value=23 Score=39.00 Aligned_cols=159 Identities=13% Similarity=0.076 Sum_probs=93.7
Q ss_pred EEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEec---cCCCeeEEEEcCCCcEEEEEcC------CeEEEEECCCC
Q 036953 141 WVVRFHPLRSEILASGSLDHE-VRLWDANTSECIGSCD---FYRPIASIAFHAEGELLAVASG------HKLYIWPYNNK 210 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~Dgt-VrLWDl~tg~~v~t~~---h~s~V~sVafSpdG~~LasgSd------d~V~IWDlrt~ 210 (792)
.++.|+|....-++.+-.-|+ ..++|....+...++. .....--=.||+||.+|+..-+ +-|-|||.+..
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 347888866666777766666 5688998876655542 1111223468999999998752 22899999744
Q ss_pred CcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc--cCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccC
Q 036953 211 EEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD--SSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELP 288 (792)
Q Consensus 211 ~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr--s~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~ 288 (792)
-.. .-....|.-.-..+.|.+||+.++...+--... ..-.++.+. ...|++.+.+..+|+.+.--. ++
T Consensus 151 fqr--vgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld-------sMePSlvlld~atG~liekh~-Lp 220 (366)
T COG3490 151 FQR--VGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD-------SMEPSLVLLDAATGNLIEKHT-LP 220 (366)
T ss_pred cce--ecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh-------hcCccEEEEeccccchhhhcc-Cc
Confidence 321 112333444456789999999887766511111 111112121 133556666656666522111 11
Q ss_pred cccCCCceEEEeEECCCCcEEE
Q 036953 289 LMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 289 ~l~gh~~~VwdV~~SpDGr~lv 310 (792)
-+.+...|--++..+||+...
T Consensus 221 -~~l~~lSiRHld~g~dgtvwf 241 (366)
T COG3490 221 -ASLRQLSIRHLDIGRDGTVWF 241 (366)
T ss_pred -hhhhhcceeeeeeCCCCcEEE
Confidence 012566788899999999887
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.78 E-value=1.6 Score=46.16 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=62.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCc-EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cC-CCe
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGN-CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FY-RPI 182 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk-~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~-s~V 182 (792)
-+..++.|..+|.|++|+.+... ....+..-...|.++--.-.++.+.+++..|+.|+.|++.-.+.+.... |+ ..+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 46789999999999999976221 1111111222333332222355688999999999999998777665553 33 344
Q ss_pred eEEEEcCCCcEEEEE--cCC-eEEEEECCCC
Q 036953 183 ASIAFHAEGELLAVA--SGH-KLYIWPYNNK 210 (792)
Q Consensus 183 ~sVafSpdG~~Lasg--Sdd-~V~IWDlrt~ 210 (792)
........++.++.+ |.+ .++.|++..-
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 444444445555554 322 2666665443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=87.66 E-value=13 Score=43.53 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=65.3
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCCCC----C------CeE--EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCC
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVPPP----R------STI--AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH 136 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~gH~----~------~V~--sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH 136 (792)
+..++....++.+.-+|..++++.-+. . .+. .+... ++..++.++.++.|+-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 445666666777777777766432111 0 000 11111 2267888889999999999999999888643
Q ss_pred CCC-----c-EEEEEccCCCCEEEEEe---------CCCeEEEEECCCCcEEEEecc
Q 036953 137 RRT-----P-WVVRFHPLRSEILASGS---------LDHEVRLWDANTSECIGSCDF 178 (792)
Q Consensus 137 ~~~-----V-tsVafSP~dg~lLaSgS---------~DgtVrLWDl~tg~~v~t~~h 178 (792)
... + ....+. + .+++.++ .++.+..+|..+|+.++.+..
T Consensus 140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 221 1 112222 2 3454443 367899999999999888753
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.07 E-value=2 Score=53.59 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=70.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCcE-EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCee
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGNC-LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIA 183 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk~-v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~ 183 (792)
.+..++.|+..|.+-..|....-. ...=..-.++|++++|+. ++.+++.|-.+|-|.+||+..++..+.+. +..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 456788888888898888754311 111112457999999998 99999999999999999999999888874 444444
Q ss_pred ---EEEEcCCCcEEEEEcCCeEEEEEC
Q 036953 184 ---SIAFHAEGELLAVASGHKLYIWPY 207 (792)
Q Consensus 184 ---sVafSpdG~~LasgSdd~V~IWDl 207 (792)
-+.+..++..+.++..++ .+|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~G-sf~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGG-SFWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCC-ceEEE
Confidence 444555666666665333 25544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=86.55 E-value=1.6 Score=34.87 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=29.4
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
...|..++|+| ..+++|.++.||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 35689999999 8999999999999999998 4443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.55 E-value=46 Score=37.54 Aligned_cols=114 Identities=22% Similarity=0.175 Sum_probs=71.0
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEE--EEecCC----------CCCcEEEEEccCCCCEEEEEe---CC-----
Q 036953 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCL--KVLSGH----------RRTPWVVRFHPLRSEILASGS---LD----- 159 (792)
Q Consensus 100 sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v--~~L~gH----------~~~VtsVafSP~dg~lLaSgS---~D----- 159 (792)
.-++...+..++--+.+|.|+--|+...... ..+.-- .+.-.-+++++ ..++|+.-- .+
T Consensus 188 ~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~-~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA-ASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp --EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET-TTTEEEEEEEE--TT-TTS
T ss_pred ccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc-ccCeEEEEecCCCCCCccC
Confidence 3345555666666788899888887655421 112100 12233477877 444444321 11
Q ss_pred --CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCc-EEEEEc--CCeEEEEECCCCCccc
Q 036953 160 --HEVRLWDANTSECIGSCDFYRPIASIAFHAEGE-LLAVAS--GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 160 --gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~-~LasgS--dd~V~IWDlrt~~~~~ 214 (792)
.+|.++|+.+++.+..+....++.+|..+.+.+ +|++.+ ++.|.+||..+++...
T Consensus 267 pgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 247888999999999998777899999998876 555443 4559999999987543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=84.98 E-value=4.6 Score=42.43 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=47.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEe---------------ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCC
Q 036953 149 RSEILASGSLDHEVRLWDANTSECIGSC---------------DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 149 dg~lLaSgS~DgtVrLWDl~tg~~v~t~---------------~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~ 211 (792)
++++++..+.+|.+++||+.+++.+..- .....|..+..+.+|.-|++-+++..+.||..-..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~ 98 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGC 98 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccce
Confidence 5688999999999999999998765432 13356777888888877777777678888875543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=84.59 E-value=14 Score=44.86 Aligned_cols=104 Identities=16% Similarity=0.241 Sum_probs=63.5
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--ccCCCeeEEEEc--CCCc-EEEEEcCCeEEEEECCCCC--
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC--DFYRPIASIAFH--AEGE-LLAVASGHKLYIWPYNNKE-- 211 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~--~h~s~V~sVafS--pdG~-~LasgSdd~V~IWDlrt~~-- 211 (792)
.+.-+.-+. -++..+.-+...++.|||.+.+.....- ...+.|.+++|. |+++ .|++|-.+.|.+|--.+..
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 334444444 3344344344557999999988755443 348899999996 5666 4556668888888543211
Q ss_pred ---cccCCe---EEec-CCCCeEEEEEccCCCeEEEEEe
Q 036953 212 ---EASSPI---IVLK-TRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 212 ---~~~~~~---~~~~-h~~sVtsVafSPdG~~LlaS~s 243 (792)
....+. .... ...+|.+..|.++|..++.++.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence 111111 1122 3468999999999996665554
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.62 E-value=44 Score=36.00 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=78.4
Q ss_pred CcEEEEEeCCCeEEE-EeccCCCcCCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEE--CCCCc-----EEEEecC----
Q 036953 69 KRGLVSWVEAESLRH-LSAKYCPLVPPPRSTIAAAFSPDGRTLAST-HGDHTVKIID--CQTGN-----CLKVLSG---- 135 (792)
Q Consensus 69 ~~~L~S~s~d~sIrv-Wd~~t~~L~gH~~~V~sLafSPDG~~LaSG-S~DGtVrIWD--l~tgk-----~v~~L~g---- 135 (792)
++.|.++..++.+.+ |+. -.--+.++|+-|.+.+..- +.+-+|.-|| +.+|. .+..++.
T Consensus 138 ~g~Ly~~~~~h~v~~i~~~--------v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~ 209 (310)
T KOG4499|consen 138 GGELYSWLAGHQVELIWNC--------VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF 209 (310)
T ss_pred ccEEEEeccCCCceeeehh--------ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc
Confidence 445566655555443 221 1224578999888777654 5677887787 55553 2333332
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCC-CcEEEEEc
Q 036953 136 HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAE-GELLAVAS 198 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpd-G~~LasgS 198 (792)
..-..-+++..- ++++.+++-..++|...|..+|+.+..+. ....+++++|--. -..|++..
T Consensus 210 e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 210 ESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 112234566666 88999999999999999999999999885 5678999999633 24454443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=83.55 E-value=30 Score=38.87 Aligned_cols=98 Identities=8% Similarity=0.061 Sum_probs=55.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCC-----CcEEE---EecC----CCCCcEEEEEccCCCCEEEEEeCC-----
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQT-----GNCLK---VLSG----HRRTPWVVRFHPLRSEILASGSLD----- 159 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~t-----gk~v~---~L~g----H~~~VtsVafSP~dg~lLaSgS~D----- 159 (792)
....+++.+++ |++++.+...++.|.+. ++... .+.. +......++|.| |+.+.++.+..
T Consensus 73 ~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKV 149 (367)
T ss_pred CccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCcee
Confidence 45788898888 44445554333445432 12221 2222 234577899999 88887766521
Q ss_pred --------------CeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc
Q 036953 160 --------------HEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 160 --------------gtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS 198 (792)
+.|.-+|..+++.. .+. .......++|+++|+++++-.
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence 33455555544322 222 223356899999999887654
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=83.33 E-value=16 Score=41.80 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=50.2
Q ss_pred EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------cCCCeeEEEEc-----CCC---cE
Q 036953 131 KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD---------FYRPIASIAFH-----AEG---EL 193 (792)
Q Consensus 131 ~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~---------h~s~V~sVafS-----pdG---~~ 193 (792)
..++...+.|++++.+ |-.+++.|..+|.+.+.|+|....+..-. ....++++.|. .|+ -.
T Consensus 80 ~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp EEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred hheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 3444567899999997 57799999999999999998887776631 23457788775 233 35
Q ss_pred EEEEc-CCeEEEEECC
Q 036953 194 LAVAS-GHKLYIWPYN 208 (792)
Q Consensus 194 LasgS-dd~V~IWDlr 208 (792)
+++|. .+.+.+|.+.
T Consensus 158 L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEe
Confidence 66666 4558888774
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=83.30 E-value=75 Score=34.70 Aligned_cols=120 Identities=16% Similarity=0.269 Sum_probs=69.9
Q ss_pred eEEEEECCCCcEEEEecC-CCCCcEEE---EEccC---CCCEEEEEeC----------CCeEEEEECCCC-------cEE
Q 036953 118 TVKIIDCQTGNCLKVLSG-HRRTPWVV---RFHPL---RSEILASGSL----------DHEVRLWDANTS-------ECI 173 (792)
Q Consensus 118 tVrIWDl~tgk~v~~L~g-H~~~VtsV---afSP~---dg~lLaSgS~----------DgtVrLWDl~tg-------~~v 173 (792)
.|+|.|..+.+.+..+.- ....+.++ .+..+ ...+++.|+. .|.|.++++... +.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 577778777766655431 12233333 33321 1466666642 288999999884 223
Q ss_pred EEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 174 GSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 174 ~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
......++|.+++-- ++ +|+++.+.+|++|++...+... ..........+.++... +++++++.
T Consensus 83 ~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~-~~~~~~~~~~i~sl~~~--~~~I~vgD 146 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLL-KKAFYDSPFYITSLSVF--KNYILVGD 146 (321)
T ss_dssp EEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEE-EEEEE-BSSSEEEEEEE--TTEEEEEE
T ss_pred EEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCcccch-hhheecceEEEEEEecc--ccEEEEEE
Confidence 334578899998865 34 4777777889999998877221 22233334466666655 55566554
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.07 E-value=37 Score=36.54 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=82.0
Q ss_pred CCeEEEEEcCCCCEEEEEECC---------CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHGD---------HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~D---------GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
...+.-..+|+|++++-.-.| |.++.|-+. ..+..+...-+.-.+++|+.+...+.++-+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 345667788999984322122 344444432 222233333344567899873444555667888898888
Q ss_pred --CCCCc-----EEEEecc----CC-CeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEcc
Q 036953 167 --ANTSE-----CIGSCDF----YR-PIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP 233 (792)
Q Consensus 167 --l~tg~-----~v~t~~h----~s-~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP 233 (792)
..+|. .+..+.. +. ..-.++...+|++.+++- .++|...|..+++... .+.-....|++++|--
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~---eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILL---EIKLPTPQITSCCFGG 263 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEE---EEEcCCCceEEEEecC
Confidence 55543 2333322 11 123455567788777666 4559999999998654 2223467899999963
Q ss_pred C-CCeEEEEE
Q 036953 234 H-AAPFVLTA 242 (792)
Q Consensus 234 d-G~~LlaS~ 242 (792)
. -..+.+++
T Consensus 264 kn~d~~yvT~ 273 (310)
T KOG4499|consen 264 KNLDILYVTT 273 (310)
T ss_pred CCccEEEEEe
Confidence 3 23344444
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=82.87 E-value=92 Score=38.37 Aligned_cols=111 Identities=11% Similarity=0.005 Sum_probs=66.5
Q ss_pred CCeEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC------CeEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHG-----DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD------HEVRL 164 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~-----DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D------gtVrL 164 (792)
-.+..+.|+||+++|+.+.. .-.|++.|+.+++.+........ ..++|.+ |++.|+....+ ..|..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 34677899999998887643 23588889988863322111111 4599999 66655544332 36888
Q ss_pred EECCCC--cEEEEecc-CCCee-EEEEcCCCcEEEEEc----CCeEEEEECCC
Q 036953 165 WDANTS--ECIGSCDF-YRPIA-SIAFHAEGELLAVAS----GHKLYIWPYNN 209 (792)
Q Consensus 165 WDl~tg--~~v~t~~h-~s~V~-sVafSpdG~~LasgS----dd~V~IWDlrt 209 (792)
+++.++ +-...+.. ..... .+..+.++++++..+ +..+.+|+...
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 888887 33334432 22232 333455787766544 23389998643
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=82.60 E-value=61 Score=35.93 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCe------EEEEECCC--C--cEE-----EEecCCCC--------CcEEEEEccCCCCE
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHT------VKIIDCQT--G--NCL-----KVLSGHRR--------TPWVVRFHPLRSEI 152 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGt------VrIWDl~t--g--k~v-----~~L~gH~~--------~VtsVafSP~dg~l 152 (792)
+....+.+.+++..++.-+.++. +..+++.. + ..+ ..+..-.+ -.-+|++.+ ++.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCCE
Confidence 45667777765555555566665 54444432 1 001 11111111 334688855 8888
Q ss_pred EEEEeCC------CeEEEEECCCCcEEEEe----------------ccCCCeeEEEEcCCCcEEEEEc------CC--e-
Q 036953 153 LASGSLD------HEVRLWDANTSECIGSC----------------DFYRPIASIAFHAEGELLAVAS------GH--K- 201 (792)
Q Consensus 153 LaSgS~D------gtVrLWDl~tg~~v~t~----------------~h~s~V~sVafSpdG~~LasgS------dd--~- 201 (792)
+++--.+ ..|..+|.. |+.+..+ ..+..+.+++++|+|+.|+++. ++ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887777 788888876 5544333 2345688999999999666553 11 1
Q ss_pred ------EEEEEC--CCCC-cccCCeEEec------CCCCeEEEEEccCCCeEEE
Q 036953 202 ------LYIWPY--NNKE-EASSPIIVLK------TRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 202 ------V~IWDl--rt~~-~~~~~~~~~~------h~~sVtsVafSPdG~~Lla 240 (792)
++|+.+ .+.. .......... ....|..+.+-++++.++.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444444 4312 1110111111 3567889999999995543
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=82.55 E-value=1.4e+02 Score=37.28 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=94.6
Q ss_pred CCCCeEEEEEc---C--C--CCEEEEEECCCeEEEEEC------CC---------CcEEEEecC---CCCCcEEEEEccC
Q 036953 94 PPRSTIAAAFS---P--D--GRTLASTHGDHTVKIIDC------QT---------GNCLKVLSG---HRRTPWVVRFHPL 148 (792)
Q Consensus 94 H~~~V~sLafS---P--D--G~~LaSGS~DGtVrIWDl------~t---------gk~v~~L~g---H~~~VtsVafSP~ 148 (792)
-..+|..++|. . + .++|++ -....+.|+.. .. ..++..+.. -..+..+++|+|.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 45678889988 2 2 234444 44456677761 11 122333431 1236778999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCC----cEEEEe--cc----------CCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCc
Q 036953 149 RSEILASGSLDHEVRLWDANTS----ECIGSC--DF----------YRPIASIAFHAEGELLAVASGHKLYIWPYNNKEE 212 (792)
Q Consensus 149 dg~lLaSgS~DgtVrLWDl~tg----~~v~t~--~h----------~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~ 212 (792)
+...||.....|...+||+... ...... .. .+.-..+.|..+-+.|++++..++.++|++....
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQ 236 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCc
Confidence 8889999999999999999211 111111 11 1233478899888899999888899999987765
Q ss_pred ccCCeEEecCCCCeEEEEEccC--CCeEEEEEe
Q 036953 213 ASSPIIVLKTRRSLRAVHFHPH--AAPFVLTAE 243 (792)
Q Consensus 213 ~~~~~~~~~h~~sVtsVafSPd--G~~LlaS~s 243 (792)
.. ..........|..+.-+|. +..++.|..
T Consensus 237 ~~-~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~ 268 (765)
T PF10214_consen 237 TE-YLVTAKTWSWILDVKRSPDNPSHVFILTSK 268 (765)
T ss_pred cc-hhccCCChhheeeEEecCCccceEEEEecC
Confidence 32 1233445678999999988 444444444
|
These proteins are found in fungi. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=82.28 E-value=24 Score=43.96 Aligned_cols=108 Identities=14% Similarity=0.057 Sum_probs=71.7
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCC--------cEEEEEcc---------------CCCCEEEEEeCCCeE
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRT--------PWVVRFHP---------------LRSEILASGSLDHEV 162 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~--------VtsVafSP---------------~dg~lLaSgS~DgtV 162 (792)
.+..++.++.++.|.-.|..+|+.+.++...... .+++.+.. ..+..++.++.|+.+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 4667888888899999999999999888633211 22344421 123478888899999
Q ss_pred EEEECCCCcEEEEeccCCCee-------------EEEEcC--CCcEEEEEc-----------CCeEEEEECCCCCcc
Q 036953 163 RLWDANTSECIGSCDFYRPIA-------------SIAFHA--EGELLAVAS-----------GHKLYIWPYNNKEEA 213 (792)
Q Consensus 163 rLWDl~tg~~v~t~~h~s~V~-------------sVafSp--dG~~LasgS-----------dd~V~IWDlrt~~~~ 213 (792)
.-.|.++|+.+..+..++.+. .+.-.| .+..+++++ ++.|+-+|.++++..
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999998876544331 111112 133455553 244999999998854
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=82.11 E-value=8.8 Score=44.28 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=58.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEcc---CCC-----------------C
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP---LRS-----------------E 151 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP---~dg-----------------~ 151 (792)
......+.++..+|++++.++...-|.|.|+|+.++..++.++|-.+.= +.|-. ... -
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEE
Confidence 3445668999999999998888888999999999998888887765432 12211 011 1
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 152 ILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 152 lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
+++-.-.-|.|.+|++++|..+..+
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEE
Confidence 2334556778888888887766655
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=80.89 E-value=33 Score=33.67 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=70.5
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC--------cEEEEecCCCCCcEEEEEcc----CCCCEEEEEeCCCeEEEEECC
Q 036953 101 AAFSPDGRTLASTHGDHTVKIIDCQTG--------NCLKVLSGHRRTPWVVRFHP----LRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 101 LafSPDG~~LaSGS~DGtVrIWDl~tg--------k~v~~L~gH~~~VtsVafSP----~dg~lLaSgS~DgtVrLWDl~ 168 (792)
-+|......|+.++.-++|.|++.... ..+..|. -...|++++-.+ ++.+.|+.|+ ...+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 355555556777778888888876532 2333443 445677765443 2355666665 5579999999
Q ss_pred CCcEEEEeccCCCeeEEEEcC----CCcEEEEEcCCeEEEEECCCCC
Q 036953 169 TSECIGSCDFYRPIASIAFHA----EGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 169 tg~~v~t~~h~s~V~sVafSp----dG~~LasgSdd~V~IWDlrt~~ 211 (792)
+..-+...+..+.++++.+-. +..++++|++..|.-||....+
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 877665556678888887742 3456777766668888865544
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=80.75 E-value=85 Score=36.08 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=61.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCC-CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH-RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH-~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
.+.+..|++||+++++|.-..+|.+.|.+.+-.+....+.-. ......+.|.- ++..++.- ...+.+.......
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l~~--~~~l~lvg~~~~~-- 290 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVLSW--EDELLLVGPDGDS-- 290 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEEEe--CCEEEEECCCCCc--
Confidence 457999999999999999999999999887666666555533 34566777875 33333322 3344444422211
Q ss_pred EEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCC
Q 036953 174 GSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 174 ~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~ 211 (792)
+.|.-++..++..--|+|+|..-...+
T Consensus 291 -----------~~~~~~~~~~l~~E~DG~riit~~~~~ 317 (410)
T PF04841_consen 291 -----------ISFWYDGPVILVSEIDGVRIITSTSHE 317 (410)
T ss_pred -----------eEEeccCceEEeccCCceEEEeCCceE
Confidence 233334444444444558887654443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 792 | ||||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-12 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-06 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-12 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-06 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-12 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-12 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-12 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-12 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-12 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-12 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-12 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-12 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-12 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-12 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-12 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-12 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-12 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-12 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-12 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 4e-11 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 6e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 7e-07 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-07 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 3e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 4e-06 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 5e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 1e-05 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 2e-05 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-05 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 4e-05 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 5e-05 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 8e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 5e-04 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 5e-04 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 6e-04 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 8e-04 |
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 792 | |||
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.97 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.96 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.96 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.96 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.96 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.96 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.96 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.96 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.96 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.95 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.95 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.95 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.95 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.95 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.94 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.94 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.94 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.94 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.94 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.94 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.94 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.93 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.93 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.93 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.93 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.93 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.93 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.93 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.93 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.93 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.93 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.93 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.93 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.92 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.92 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.92 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.92 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.92 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.92 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.92 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.92 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.92 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.92 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.92 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.92 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.92 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.92 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.92 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.92 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.91 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.91 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.91 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.91 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.91 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.91 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.91 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.91 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.91 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.91 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.9 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.9 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.9 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.9 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.9 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.9 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.9 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.89 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.89 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.89 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.89 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.89 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.88 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.88 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.88 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.88 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.88 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.88 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.88 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.88 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.88 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.88 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.88 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.88 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.87 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.87 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.87 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.87 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.87 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.87 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.87 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.87 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.87 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.87 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.87 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.86 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.86 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.85 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.85 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.85 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.85 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.85 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.85 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.85 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.85 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.84 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.84 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.84 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.84 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.84 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.84 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.83 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.83 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.82 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.82 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.82 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.82 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.81 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.81 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.81 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.8 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.8 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.77 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.76 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.76 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.75 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.74 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.7 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.67 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.66 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.66 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.65 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.64 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.64 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.62 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.62 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.62 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.61 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.61 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.61 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.6 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.6 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.6 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.58 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.58 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.53 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.53 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.53 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.52 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.5 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.49 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.49 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.47 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.46 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.44 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.43 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.42 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.42 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.4 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.38 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.38 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.34 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.31 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.3 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.3 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.29 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.26 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.24 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.23 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.11 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.08 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.08 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.06 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.06 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.05 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.04 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.04 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.98 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.97 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.96 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.95 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.94 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.94 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.93 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.91 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.88 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.88 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.86 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.83 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.77 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.76 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.73 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.72 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.72 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.71 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.7 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.7 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.66 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.62 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.6 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.6 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.58 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.54 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.53 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.51 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.51 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.47 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.47 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.43 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.3 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.3 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.26 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.25 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.25 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.24 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.23 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.23 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.17 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.06 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.05 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.0 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.97 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.95 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.92 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.87 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.85 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.68 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.67 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.65 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.62 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.58 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.57 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.55 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.55 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.54 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.48 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.47 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.39 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.38 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.35 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.31 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.26 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.23 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.16 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.14 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.14 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.12 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.06 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.06 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.0 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.98 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.95 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.94 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.85 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.77 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 96.72 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.68 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.56 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.42 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.42 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.37 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.31 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.26 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.22 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.2 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.18 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 96.09 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.09 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.0 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.0 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 95.96 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.92 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.86 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.85 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 95.85 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.76 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.63 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 95.51 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 95.36 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.29 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.2 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 95.09 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 94.98 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 94.96 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 94.89 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 94.88 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 94.4 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 94.31 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 94.21 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 94.12 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 94.05 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 93.71 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 93.71 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.66 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 93.61 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 93.52 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.12 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 92.9 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 92.8 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 92.75 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 92.54 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 92.4 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 92.26 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 92.09 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 90.63 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 89.94 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 89.09 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 87.83 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 87.33 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 87.01 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 83.04 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 81.74 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 81.06 |
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=266.41 Aligned_cols=267 Identities=13% Similarity=0.100 Sum_probs=203.2
Q ss_pred eEeeecccceeeCCCCceeeeEEeeCCCceEeecCCC-c----------------------------------eeecCCc
Q 036953 26 RNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSD-S----------------------------------SVRDAKR 70 (792)
Q Consensus 26 r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a-~----------------------------------sv~d~~~ 70 (792)
.+.|+....... .....+.+++|++++++++++... . ..+..+.
T Consensus 16 ~r~w~~~~~~~~-~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 94 (344)
T 4gqb_B 16 AREWNLPPNAPA-CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER 94 (344)
T ss_dssp -------CCSCS-SCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT
T ss_pred ccccCCCCCCcc-cccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC
Confidence 345665544332 344578999999999887654310 0 0112345
Q ss_pred EEEEEeCCCeEEEEeccCCC--------cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEE
Q 036953 71 GLVSWVEAESLRHLSAKYCP--------LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWV 142 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~--------L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vts 142 (792)
.+++++.|++|++||..+++ +.+|.+.|++++|+|++++|++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 78899999999999998663 3489999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---cCCCeeEEEEcCC-CcEEEEEc-CCeEEEEECCCCCcccCCe
Q 036953 143 VRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD---FYRPIASIAFHAE-GELLAVAS-GHKLYIWPYNNKEEASSPI 217 (792)
Q Consensus 143 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~---h~s~V~sVafSpd-G~~LasgS-dd~V~IWDlrt~~~~~~~~ 217 (792)
++|++++..+|++++.|++|++||+++++++..+. +...+.+++|+|+ +++|++++ ++.|+|||+++++.. .
T Consensus 175 ~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~---~ 251 (344)
T 4gqb_B 175 VAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV---L 251 (344)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC---E
T ss_pred EEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE---E
Confidence 99999555789999999999999999999888773 4567999999985 56888888 556999999988754 3
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEe-eCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCce
Q 036953 218 IVLKTRRSLRAVHFHPHAAPFVLTAE-VNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFL 296 (792)
Q Consensus 218 ~~~~h~~sVtsVafSPdG~~LlaS~s-~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~ 296 (792)
.+..|...|++++|+|++..++++++ +..| .+|+...+.... +.+|...
T Consensus 252 ~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i-----------------------~vwd~~~~~~~~-------~~~H~~~ 301 (344)
T 4gqb_B 252 SSAVHSQCVTGLVFSPHSVPFLASLSEDCSL-----------------------AVLDSSLSELFR-------SQAHRDF 301 (344)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEETTSCE-----------------------EEECTTCCEEEE-------ECCCSSC
T ss_pred EEcCCCCCEEEEEEccCCCeEEEEEeCCCeE-----------------------EEEECCCCcEEE-------EcCCCCC
Confidence 56779999999999999976555554 4433 344444443322 2459999
Q ss_pred EEEeEECCCCc-EEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 297 IVPSVSIDDSR-IDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 297 VwdV~~SpDGr-~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
|++++|+|+|+ +|+ ++++|++|.-|++-.+
T Consensus 302 V~~v~~sp~~~~lla--------------------------s~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 302 VRDATWSPLNHSLLT--------------------------TVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEEECSSSTTEEE--------------------------EEETTSCEEEEECCC-
T ss_pred EEEEEEeCCCCeEEE--------------------------EEcCCCeEEEEECCCC
Confidence 99999999987 555 7899999999987544
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=262.83 Aligned_cols=266 Identities=17% Similarity=0.240 Sum_probs=210.0
Q ss_pred CCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEE
Q 036953 38 SPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLAST 113 (792)
Q Consensus 38 s~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSG 113 (792)
..+...+.++.|+|++. .+++++.|++|++||..++ .+.+|.+.|.+++|+|++++|++|
T Consensus 105 ~gh~~~V~~~~~~p~~~----------------~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFS----------------VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp ECCSSCEEEEEECSSSS----------------EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred cccCCcEEEEEEcCCCC----------------EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEE
Confidence 34455666777766654 4566788999999998866 467899999999999999999999
Q ss_pred ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCc
Q 036953 114 HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGE 192 (792)
Q Consensus 114 S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~ 192 (792)
+.|++|+|||+.+++++..+.+|...|.+++|+| ++++|++++.|++|++||+++++++..+ .|...|.++.|+++++
T Consensus 169 s~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247 (410)
T ss_dssp ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC
Confidence 9999999999999999999999999999999999 8999999999999999999999998888 5888999999999999
Q ss_pred EEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccC--------------------CCeEEEEEeeCccccCC
Q 036953 193 LLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPH--------------------AAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 193 ~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPd--------------------G~~LlaS~s~~dLrs~d 251 (792)
+|++++. +.|++||+++.+.. .....|...|.+++|+|+ +.++++++.+..++.|+
T Consensus 248 ~l~s~s~D~~v~vwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 248 LIASCSNDQTVRVWVVATKECK---AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp EEEEEETTSCEEEEETTTCCEE---EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcee---eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE
Confidence 9999984 55999999887643 245678899999999997 45566665555555444
Q ss_pred C-----ceeeecCCC---cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEEEccccccC
Q 036953 252 S-----SMTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRAS 318 (792)
Q Consensus 252 ~-----~~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~ 318 (792)
. ...+....+ ...+.+...+++.+..+..+.++. ....+.+|...|++++|+|+|.+|+
T Consensus 325 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-------- 396 (410)
T 1vyh_C 325 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV-------- 396 (410)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE--------
T ss_pred CCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEE--------
Confidence 2 223332222 223444444444555555555554 1235567999999999999999998
Q ss_pred CCCccccccccccccCCCCCccccccccccc
Q 036953 319 SSNMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 319 Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
+++.|++|.-|+.
T Consensus 397 ------------------sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 397 ------------------TGSVDQTVKVWEC 409 (410)
T ss_dssp ------------------EEETTSEEEEEC-
T ss_pred ------------------EEeCCCcEEEEeC
Confidence 8899999998874
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=252.54 Aligned_cols=282 Identities=15% Similarity=0.168 Sum_probs=215.6
Q ss_pred ceEeeecccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCCCCe
Q 036953 25 ARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPPRST 98 (792)
Q Consensus 25 ~r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V 98 (792)
..+.|.... +....+...+.+++|++++. ..+..+++++.|+++++|+.... .+.+|...|
T Consensus 17 ~~~~~g~~~-~~~~~H~~~V~~v~~~~~~~------------~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v 83 (321)
T 3ow8_A 17 GTNQYGILF-KQEQAHDDAIWSVAWGTNKK------------ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGV 83 (321)
T ss_dssp ----CEEEE-EETTSSSSCEEEEEEC-------------------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred hhhhhhhee-eecccCCCcEEEEEEecCCC------------CCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCE
Confidence 344444433 33446778999999988743 22446788899999999987644 367999999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-
Q 036953 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD- 177 (792)
Q Consensus 99 ~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~- 177 (792)
.+++|++++..+++++.|++|+|||+.+++++..+..|...+.+++|+| ++++|++++.|++|++||+++++....+.
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~ 162 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDT 162 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecC
Confidence 9999999999999999999999999999999999999999999999999 99999999999999999999998887774
Q ss_pred cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc---
Q 036953 178 FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS--- 253 (792)
Q Consensus 178 h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~--- 253 (792)
+...+.+++|+|++++|++++ ++.|++||+++++... ....|...|++++|+|+++.|++++.+..++.|+..
T Consensus 163 ~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 163 RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH---TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred CCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 678899999999999999998 4559999998877432 455688899999999999977777665555544432
Q ss_pred --eeeecCCC---cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcc
Q 036953 254 --MTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQ 323 (792)
Q Consensus 254 --~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~ 323 (792)
..+..... ...|.+....++.+..+..+.++. ....+.+|...|++++|+|+|+.|+
T Consensus 240 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~------------- 306 (321)
T 3ow8_A 240 LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIV------------- 306 (321)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-------------
T ss_pred eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-------------
Confidence 22222222 233444444444445444555544 1234567999999999999999999
Q ss_pred ccccccccccCCCCCccccccccccc
Q 036953 324 IEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 324 ~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
+++.|++|.-||.
T Consensus 307 -------------s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 307 -------------SVGDDQEIHIYDC 319 (321)
T ss_dssp -------------EEETTCCEEEEEC
T ss_pred -------------EEeCCCeEEEEeC
Confidence 7888999988883
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-27 Score=268.85 Aligned_cols=211 Identities=15% Similarity=0.205 Sum_probs=164.7
Q ss_pred CCCceEeeecccc-----eeeCCCCceeeeEEeeCCCceEeecCCC----cee--e-----------------------c
Q 036953 22 RRRARNVSRLLAH-----REISPKTKYVPKRQWVDASKLKTCGPSD----SSV--R-----------------------D 67 (792)
Q Consensus 22 ~s~~r~V~~l~~~-----rels~~tk~V~s~aWspd~~lla~G~~a----~sv--~-----------------------d 67 (792)
..+.+++|+.... ..+..+...+..++|+|+++.++++... ..+ + +
T Consensus 79 ~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~ 158 (611)
T 1nr0_A 79 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPS 158 (611)
T ss_dssp TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSS
T ss_pred CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCC
Confidence 4567899987432 2344567789999999999886543221 011 1 1
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-------CC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-------GH 136 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-------gH 136 (792)
+...+++++.|+++++|+.... .+.+|.+.|.+++|+||+++|++++.|++|+|||+.+++++..+. +|
T Consensus 159 ~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 159 RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238 (611)
T ss_dssp SSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred CCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccccc
Confidence 2236999999999999998754 467999999999999999999999999999999999999988884 79
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----------------------------------------
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC---------------------------------------- 176 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~---------------------------------------- 176 (792)
.+.|.+++|+| ++++|++++.|++|++||+++++++..+
T Consensus 239 ~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~ 317 (611)
T 1nr0_A 239 SGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSID 317 (611)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEE
T ss_pred CCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcc
Confidence 99999999999 9999999999999999999987655432
Q ss_pred ----ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC
Q 036953 177 ----DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 177 ----~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG 235 (792)
.|...|.+++|+|+|++|++++ |+.|++||+.+++.... ....|...|.+++|++++
T Consensus 318 ~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~--~~~~h~~~v~~~~~s~~~ 379 (611)
T 1nr0_A 318 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV--FPDVHATMITGIKTTSKG 379 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC--SSCSCSSCEEEEEECTTS
T ss_pred eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee--cccCCcceEEEEEECCCC
Confidence 3677899999999999999999 45599999987653220 012344555555555443
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=256.95 Aligned_cols=270 Identities=14% Similarity=0.092 Sum_probs=200.0
Q ss_pred CCceEeeecccceeeCCCCceeeeEEeeCCCceEeecCCC------cee-----------------------------ec
Q 036953 23 RRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSD------SSV-----------------------------RD 67 (792)
Q Consensus 23 s~~r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a------~sv-----------------------------~d 67 (792)
......|+++.... ..+...+.+++|+|+|++++++..+ ..+ +.
T Consensus 25 ~~~~~~w~~p~~~p-~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 25 SSKGSAWGRPVTAP-ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWV 103 (357)
T ss_dssp ----------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEE
T ss_pred CccccccCCCCCCc-ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEc
Confidence 34456677655432 3466789999999999998776431 111 11
Q ss_pred CCcEEEEEeCCCeEEEEeccCCC--------cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCP--------LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRT 139 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~--------L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~ 139 (792)
.+..+++++.+++|++||..+++ ..+|...|++++|+|++++|++|+.|++|+|||+.+++++..+.+|...
T Consensus 104 ~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~ 183 (357)
T 4g56_B 104 SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE 183 (357)
T ss_dssp TTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC
Confidence 23457788899999999987552 2479999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---ccCCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCccc
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC---DFYRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~---~h~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
|++++|++++..++++++.|++|++||+++++++..+ .+...+.+++|+|++ .+|++++ ++.|++||+++.+..
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~- 262 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA- 262 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC-
T ss_pred EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe-
Confidence 9999999944568999999999999999998877665 356789999999985 6788887 455999999987754
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEe-eCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCC
Q 036953 215 SPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSL 293 (792)
Q Consensus 215 ~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh 293 (792)
.....|...|++++|+|++..++++++ +.. +.+|+...+...... +|
T Consensus 263 --~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-----------------------i~iwd~~~~~~~~~~-------~H 310 (357)
T 4g56_B 263 --QTSAVHSQNITGLAYSYHSSPFLASISEDCT-----------------------VAVLDADFSEVFRDL-------SH 310 (357)
T ss_dssp --EEECCCSSCEEEEEECSSSSCCEEEEETTSC-----------------------EEEECTTSCEEEEEC-------CC
T ss_pred --EEEeccceeEEEEEEcCCCCCEEEEEeCCCE-----------------------EEEEECCCCcEeEEC-------CC
Confidence 355678899999999999876665554 333 344444444433322 48
Q ss_pred CceEEEeEECC-CCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 294 PFLIVPSVSID-DSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 294 ~~~VwdV~~Sp-DGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
...|.+++|+| ||++|+ ++++|++|.-|++...
T Consensus 311 ~~~V~~vafsP~d~~~l~--------------------------s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 311 RDFVTGVAWSPLDHSKFT--------------------------TVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSCEEEEEECSSSTTEEE--------------------------EEETTSCEEEEECC--
T ss_pred CCCEEEEEEeCCCCCEEE--------------------------EEcCCCeEEEEECCCC
Confidence 99999999998 899999 8999999999997543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-27 Score=249.76 Aligned_cols=268 Identities=15% Similarity=0.178 Sum_probs=212.6
Q ss_pred ceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCE
Q 036953 34 HREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRT 109 (792)
Q Consensus 34 ~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~ 109 (792)
.+.+..+...+..+.|++++++ +++++.|++|++|+..++ .+..|...|.+++|+|++++
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~----------------l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 111 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRL----------------LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSE----------------EEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSE
T ss_pred heeecCCCCceEEEEECCCCCE----------------EEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCE
Confidence 4556677788999999988764 455578899999998765 34678999999999999999
Q ss_pred EEEEECCCeEEEEECCCC----cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeE
Q 036953 110 LASTHGDHTVKIIDCQTG----NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIAS 184 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tg----k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~s 184 (792)
|++|+.|+.|++||+.++ +....+.+|.+.|.++.|++ ++ .+++++.|++|++||+++++++..+. |...|.+
T Consensus 112 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~ 189 (340)
T 1got_B 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189 (340)
T ss_dssp EEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEE
Confidence 999999999999999875 35677889999999999998 54 58999999999999999999988884 8899999
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----eeeec
Q 036953 185 IAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----MTRAT 258 (792)
Q Consensus 185 VafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~~l~t 258 (792)
++|+|++++|++++ ++.|++||+++++... ....|...|++++|+|+++.|++++.+..++.|+.. ..+..
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~---~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~ 266 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCeeEE---EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc
Confidence 99999999999998 5559999998876432 456688999999999999988887776666655533 11111
Q ss_pred CC---C--cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccc
Q 036953 259 SP---G--YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSA 328 (792)
Q Consensus 259 ~s---g--~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~ 328 (792)
.. + ...|.+....++.+..+..+.++. ....+.+|...|++++|+|||++|+
T Consensus 267 ~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~------------------ 328 (340)
T 1got_B 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA------------------ 328 (340)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEE------------------
T ss_pred CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEE------------------
Confidence 11 0 233444555555555555555554 1235678999999999999999999
Q ss_pred cccccCCCCCcccccccccc
Q 036953 329 SLHLQSDSNVEQDGTVPSME 348 (792)
Q Consensus 329 ~~q~~~~~sgs~D~tv~p~~ 348 (792)
+++.|++|.-|+
T Consensus 329 --------s~s~D~~i~iWd 340 (340)
T 1got_B 329 --------TGSWDSFLKIWN 340 (340)
T ss_dssp --------EEETTSCEEEEC
T ss_pred --------EEcCCccEEecC
Confidence 788999988875
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=253.68 Aligned_cols=275 Identities=17% Similarity=0.184 Sum_probs=200.9
Q ss_pred eCCCCc-eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC-------cCCCCCCeEEEEEcCCCC
Q 036953 37 ISPKTK-YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP-------LVPPPRSTIAAAFSPDGR 108 (792)
Q Consensus 37 ls~~tk-~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~-------L~gH~~~V~sLafSPDG~ 108 (792)
+..+.. .+..++|+|++++++++ +.|++|++|+...+. ..+|...|.+++|+|+++
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~----------------~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~ 74 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASC----------------GGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN 74 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEE----------------ETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS
T ss_pred ecCCCCCcEEEEEECCCCCEEEEE----------------cCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC
Confidence 334444 78899999998755444 667777888765431 368999999999999999
Q ss_pred EEEEEECCCeEEEEECCCC--cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc---EEEEe-ccCCCe
Q 036953 109 TLASTHGDHTVKIIDCQTG--NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE---CIGSC-DFYRPI 182 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~tg--k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~---~v~t~-~h~s~V 182 (792)
+|++|+.|++|+|||+..+ +++..+.+|...|.+++|+| ++++|++++.|++|++||+++++ ++..+ .|...|
T Consensus 75 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v 153 (345)
T 3fm0_A 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153 (345)
T ss_dssp EEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred EEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence 9999999999999999876 46788999999999999999 99999999999999999998764 34444 488899
Q ss_pred eEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCce-------
Q 036953 183 ASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSM------- 254 (792)
Q Consensus 183 ~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~------- 254 (792)
.+++|+|++++|++++. +.|++||.+..+... ......|...|++++|+|++++|++++.+..++.|+...
T Consensus 154 ~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~-~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~ 232 (345)
T 3fm0_A 154 KHVVWHPSQELLASASYDDTVKLYREEEDDWVC-CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV 232 (345)
T ss_dssp EEEEECSSSSCEEEEETTSCEEEEEEETTEEEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE-EEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccc
Confidence 99999999999999994 559999997765321 234567899999999999999888877776666654211
Q ss_pred ----------eeecCCC-------cccCCCCceEEEEecCCCEEEEeecc--------------CcccCCCceEEEeEEC
Q 036953 255 ----------TRATSPG-------YLRYPPPAVFVANAQSGDHVSLAAEL--------------PLMSSLPFLIVPSVSI 303 (792)
Q Consensus 255 ----------~l~t~sg-------~~~~p~~~~~l~~~ssG~~~~l~s~l--------------~~l~gh~~~VwdV~~S 303 (792)
.+.+..+ ...|.+....++.+..+..+.++... ....+|...|.+++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 312 (345)
T 3fm0_A 233 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN 312 (345)
T ss_dssp CCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC
T ss_pred eeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe
Confidence 0001111 11222222223333333333333210 1234688888888888
Q ss_pred CCC-cEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 304 DDS-RIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 304 pDG-r~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
|++ .+|+ +++.|++|.-|+.....+.
T Consensus 313 p~~~~~la--------------------------S~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 313 PKEPGLLA--------------------------SCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp SSSTTEEE--------------------------EEETTSCEEEEEECC----
T ss_pred CCCceEEE--------------------------EcCCCCcEEEEEecCCCCc
Confidence 887 4777 8999999999998887654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-27 Score=245.10 Aligned_cols=246 Identities=13% Similarity=0.165 Sum_probs=200.2
Q ss_pred ceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCE
Q 036953 34 HREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRT 109 (792)
Q Consensus 34 ~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~ 109 (792)
++.+..+...+..++|+|++.++ ++++.|+++++|+..++ .+..|...|.+++|+|++++
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l----------------~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 69 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWV----------------LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNW 69 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEE----------------EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTE
T ss_pred EEeecCCCCceEEEEECCCCCEE----------------EEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCE
Confidence 44555667789999999997754 44577899999998765 35689999999999999999
Q ss_pred EEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEe-ccCCCeeEEEE
Q 036953 110 LASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC-IGSC-DFYRPIASIAF 187 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-v~t~-~h~s~V~sVaf 187 (792)
|++|+.|++|++||+.+++++..+.+|.+.|++++|+| ++++|++|+.|++|++||++++.. ...+ .|...|.+++|
T Consensus 70 l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence 99999999999999999999999999999999999999 899999999999999999998744 4445 58899999999
Q ss_pred cC-CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEcc--CCCeEEEEEeeCccccCCCceeeecCCCcc
Q 036953 188 HA-EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP--HAAPFVLTAEVNDLDSSDSSMTRATSPGYL 263 (792)
Q Consensus 188 Sp-dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP--dG~~LlaS~s~~dLrs~d~~~~l~t~sg~~ 263 (792)
+| ++.+|++++ |+.|++||++...... .....+...+..++|+| ++.++++++.+.
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~------------------ 208 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNF--TLTTGQERGVNYVDYYPLPDKPYMITASDDL------------------ 208 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSSCSE--EEECCCTTCEEEEEECCSTTCCEEEEEETTS------------------
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCccc--eeccCCcCcEEEEEEEEcCCCCEEEEEcCCC------------------
Confidence 99 678999998 5569999998766432 22334667899999987 566666555444
Q ss_pred cCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccc
Q 036953 264 RYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGT 343 (792)
Q Consensus 264 ~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~t 343 (792)
.+.+|+..++.++.. +.+|...|..+.|+|++++|+ +++.|++
T Consensus 209 -----~i~iWd~~~~~~~~~------~~~h~~~v~~~~~~p~~~~l~--------------------------s~s~Dg~ 251 (304)
T 2ynn_A 209 -----TIKIWDYQTKSCVAT------LEGHMSNVSFAVFHPTLPIII--------------------------SGSEDGT 251 (304)
T ss_dssp -----EEEEEETTTTEEEEE------EECCSSCEEEEEECSSSSEEE--------------------------EEETTSC
T ss_pred -----eEEEEeCCCCcccee------eCCCCCCEEEEEECCCCCEEE--------------------------EEcCCCe
Confidence 344555555544333 345999999999999999999 8999999
Q ss_pred cccccccCCC
Q 036953 344 VPSMETFPVI 353 (792)
Q Consensus 344 v~p~~~~~~~ 353 (792)
|.-||...++
T Consensus 252 i~iWd~~~~~ 261 (304)
T 2ynn_A 252 LKIWNSSTYK 261 (304)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999977663
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-27 Score=246.73 Aligned_cols=272 Identities=12% Similarity=0.146 Sum_probs=205.8
Q ss_pred eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC---------CCcCCCCCCeEEEEEcC
Q 036953 35 REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY---------CPLVPPPRSTIAAAFSP 105 (792)
Q Consensus 35 rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t---------~~L~gH~~~V~sLafSP 105 (792)
..+..+...+.+++|++++ ...+++++.|++|++|+... ..+.+|...|.+++|+|
T Consensus 11 ~~l~gH~~~V~~l~~~~~~---------------~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 75 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQ---------------PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75 (319)
T ss_dssp EEECCCSSCEEEEEECSSC---------------TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT
T ss_pred EEEccccceEEEEEccCCC---------------ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC
Confidence 3566777888888888753 22556678888999998642 14679999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEE
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASI 185 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sV 185 (792)
++++|++|+.|++|+|||+.+++++..+.+|...|.+++|+| ++++|++++.|++|++||++.........|...+.++
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV 154 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEE
Confidence 999999999999999999999999999999999999999999 9999999999999999999765444444689999999
Q ss_pred EEcCCC------cEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----
Q 036953 186 AFHAEG------ELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS----- 253 (792)
Q Consensus 186 afSpdG------~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~----- 253 (792)
.|+|.. .+|++++. +.|++||+++.+.. .....|...|++++|+|++++|++++.+..++.|+..
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE---ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEE---EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh---eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 999854 47888884 55999999887643 3456789999999999999988887776655555432
Q ss_pred eeeecCCC--cccCCCCceEEEEecCCCEEEEee-c-----------c-CcccCCCceEEEeEECCCCcEEEEccccccC
Q 036953 254 MTRATSPG--YLRYPPPAVFVANAQSGDHVSLAA-E-----------L-PLMSSLPFLIVPSVSIDDSRIDLQHASRRAS 318 (792)
Q Consensus 254 ~~l~t~sg--~~~~p~~~~~l~~~ssG~~~~l~s-~-----------l-~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~ 318 (792)
..+..... ...|.+....++....+. +.++. . . .....|...+++++|+|||++|+
T Consensus 232 ~~~~~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-------- 302 (319)
T 3frx_A 232 YTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF-------- 302 (319)
T ss_dssp EEEECCSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE--------
T ss_pred EEecCCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEE--------
Confidence 22222111 233444444444433322 22221 0 0 11233567899999999999999
Q ss_pred CCCccccccccccccCCCCCccccccccccccCC
Q 036953 319 SSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 319 Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+|+.|++|.-|++..+
T Consensus 303 ------------------sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 303 ------------------AGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ------------------EEETTSCEEEEEEEEC
T ss_pred ------------------EeecCceEEEEEEeec
Confidence 8999999999997653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-27 Score=250.89 Aligned_cols=262 Identities=14% Similarity=0.173 Sum_probs=210.9
Q ss_pred cccceeeCCCCceeeeEEeeCCCceEeecCCCceeecC--------------------------CcEEEEEeCCCeEEEE
Q 036953 31 LLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDA--------------------------KRGLVSWVEAESLRHL 84 (792)
Q Consensus 31 l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~--------------------------~~~L~S~s~d~sIrvW 84 (792)
+...+.+..+...+.+++|++++.+++++..+..+..+ +..+++++.|+.+++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 44556777888899999999999888777665544222 2356777889999999
Q ss_pred eccCC----------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC-CCCEE
Q 036953 85 SAKYC----------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL-RSEIL 153 (792)
Q Consensus 85 d~~t~----------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~-dg~lL 153 (792)
+.... .+.+|...|.+++|+|+++.|++++.|++|++||+.+++++..+.+|...|.+++|+|. ++++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 87532 34579999999999999999999999999999999999999999999999999999883 45899
Q ss_pred EEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEE
Q 036953 154 ASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHF 231 (792)
Q Consensus 154 aSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVaf 231 (792)
++|+.|++|++||+++++++..+. |...|.+++|+|++++|++++. +.|++||++..+... ......+...+++++|
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~-~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-IYSKESIIFGASSVDF 292 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCTTCCSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEcCCCcccceeEEEE
Confidence 999999999999999999998884 8899999999999999999995 559999998876432 0011123457899999
Q ss_pred ccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEE
Q 036953 232 HPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQ 311 (792)
Q Consensus 232 SPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~ 311 (792)
+|+++.+++++.+.. +.+|+..++..+.. +.+|...|++++|+|||++|+
T Consensus 293 s~~g~~l~~g~~d~~-----------------------i~vwd~~~~~~~~~------l~~h~~~v~~l~~spdg~~l~- 342 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYT-----------------------INVWDVLKGSRVSI------LFGHENRVSTLRVSPDGTAFC- 342 (354)
T ss_dssp CTTSSEEEEEETTSC-----------------------EEEEETTTCSEEEE------ECCCSSCEEEEEECTTSSCEE-
T ss_pred eCCCCEEEEEECCCc-----------------------EEEEECCCCceEEE------EECCCCcEEEEEECCCCCEEE-
Confidence 999997777665443 44555555554332 345999999999999999999
Q ss_pred ccccccCCCCccccccccccccCCCCCcccccccccc
Q 036953 312 HASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSME 348 (792)
Q Consensus 312 ~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~ 348 (792)
+++.|++|.-|+
T Consensus 343 -------------------------sgs~D~~v~vW~ 354 (354)
T 2pbi_B 343 -------------------------SGSWDHTLRVWA 354 (354)
T ss_dssp -------------------------EEETTSEEEEEC
T ss_pred -------------------------EEcCCCCEEecC
Confidence 788899888775
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-26 Score=235.68 Aligned_cols=256 Identities=20% Similarity=0.335 Sum_probs=198.3
Q ss_pred eeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEE
Q 036953 36 EISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLA 111 (792)
Q Consensus 36 els~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~La 111 (792)
.+..+...+.+++|+|+++++ ++++.|+.+++|+...+ .+.+|...|.+++|+|++++|+
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l----------------~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 81 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWL----------------ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEE----------------EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEcccCCcEEEEEECCCCCEE----------------EEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEE
Confidence 344667789999999987654 44567888888887655 3578999999999999999999
Q ss_pred EEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCC
Q 036953 112 STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAE 190 (792)
Q Consensus 112 SGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpd 190 (792)
+++.|+.|++||+.+++++..+.+|...|.+++|+| ++++|++++.|++|++||+++++++..+. |...|.+++|+|+
T Consensus 82 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred EECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence 999999999999999999999999999999999999 99999999999999999999999888884 7889999999999
Q ss_pred CcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----eeeecCCC---
Q 036953 191 GELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----MTRATSPG--- 261 (792)
Q Consensus 191 G~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~~l~t~sg--- 261 (792)
+++|++++ ++.|++||+++.+... .....+...+..++|+|+++++++++.+..++.++.. ..+.....
T Consensus 161 ~~~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 238 (312)
T 4ery_A 161 GSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEE--EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS
T ss_pred CCEEEEEeCCCcEEEEECCCCceee--EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE
Confidence 99999998 4559999998876432 1223456789999999999988887775555544432 12221111
Q ss_pred --cccC-CCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEE
Q 036953 262 --YLRY-PPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 262 --~~~~-p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
...+ +.....++.+..+..+.++. -...+.+|...|+.++++|++++++
T Consensus 239 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 295 (312)
T 4ery_A 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 295 (312)
T ss_dssp CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEE
T ss_pred EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceE
Confidence 0111 12233344444444444443 1234567999999999999999998
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=239.54 Aligned_cols=276 Identities=13% Similarity=0.115 Sum_probs=204.8
Q ss_pred eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEE
Q 036953 35 REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAF 103 (792)
Q Consensus 35 rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLaf 103 (792)
..+..++..+.++.|..... ....+..|++++.|++|++|+.... .+.+|...|.+++|
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~----------~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 84 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQK----------ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL 84 (343)
T ss_dssp EEEECCSSCEEEEEECCCSS----------TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEE
T ss_pred eeeccchhhhhheeeEEEee----------cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEE
Confidence 34556777888888733211 0013446788889999999997532 36799999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---ccCC
Q 036953 104 SPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC---DFYR 180 (792)
Q Consensus 104 SPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~---~h~s 180 (792)
+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||+......... .|..
T Consensus 85 ~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 163 (343)
T 2xzm_R 85 SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSD 163 (343)
T ss_dssp CSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSS
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCc
Confidence 99999999999999999999999999999999999999999999 9999999999999999999854333332 4778
Q ss_pred CeeEEEEcCCC----------cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcccc
Q 036953 181 PIASIAFHAEG----------ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDS 249 (792)
Q Consensus 181 ~V~sVafSpdG----------~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs 249 (792)
.|.+++|+|++ .+|++++ ++.|++||.+. +. ......|...|++++|+|+|++|++++.+..++.
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~---~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~i 239 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI---RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI 239 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE---EEEEECCSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce---eEEEcCccccceEEEECCCCCEEEEEcCCCeEEE
Confidence 89999999987 6888888 55699999432 21 2345678899999999999998888777655554
Q ss_pred CCCc------eeeecCC--CcccCCCCceEEEEecCCCEEEEee-cc----C--c-----------ccCCCceEEEeEEC
Q 036953 250 SDSS------MTRATSP--GYLRYPPPAVFVANAQSGDHVSLAA-EL----P--L-----------MSSLPFLIVPSVSI 303 (792)
Q Consensus 250 ~d~~------~~l~t~s--g~~~~p~~~~~l~~~ssG~~~~l~s-~l----~--~-----------l~gh~~~VwdV~~S 303 (792)
|+.. ..+.... ....|.+....++...++.. .++. .. . . ..+|...|++++|+
T Consensus 240 wd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v-~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 240 WDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGV-KIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp EESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCE-EEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred EECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCE-EEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 4431 1111111 12334444455555544443 3332 10 0 1 12688899999999
Q ss_pred CCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 304 DDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 304 pDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
|+|++|+ +|+.|++|.-|+.-.+
T Consensus 319 p~g~~l~--------------------------sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 319 ALGKKLF--------------------------AGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSSCCEE--------------------------EEETTSEEEEEEEEEE
T ss_pred CCCCeEE--------------------------EecCCceEEEEEEEcc
Confidence 9999999 7889999999986544
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=258.47 Aligned_cols=227 Identities=14% Similarity=0.183 Sum_probs=181.0
Q ss_pred CceEeeeccc---ceeeCCCCceeeeEEeeCCCceEeecCCCcee--ecC--------------------------CcEE
Q 036953 24 RARNVSRLLA---HREISPKTKYVPKRQWVDASKLKTCGPSDSSV--RDA--------------------------KRGL 72 (792)
Q Consensus 24 ~~r~V~~l~~---~rels~~tk~V~s~aWspd~~lla~G~~a~sv--~d~--------------------------~~~L 72 (792)
+.+.+|+... .+.+..+...+..++|+|+++++++|..+..+ |+- +..+
T Consensus 39 ~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l 118 (611)
T 1nr0_A 39 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 118 (611)
T ss_dssp TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEE
Confidence 4677888753 33455677889999999999998888655443 221 1123
Q ss_pred EEEeCC----CeEEEEeccC--CCcCCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 036953 73 VSWVEA----ESLRHLSAKY--CPLVPPPRSTIAAAFSPDGR-TLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 73 ~S~s~d----~sIrvWd~~t--~~L~gH~~~V~sLafSPDG~-~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf 145 (792)
++++.+ +.+++|+... ..+.+|.+.|++++|+|++. .|++|+.|++|++||..+++++..+.+|...|++++|
T Consensus 119 ~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~f 198 (611)
T 1nr0_A 119 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 198 (611)
T ss_dssp EEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEE
T ss_pred EEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEE
Confidence 333333 3677777532 35789999999999999886 6999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccC-
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSC--------DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASS- 215 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~--------~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~- 215 (792)
+| ++++|++++.|++|++||+.+++++..+ .|...|.+++|+|++++|++++ |+.|++||+++++....
T Consensus 199 sp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 199 NP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 99 9999999999999999999999988877 5889999999999999999999 45599999987653210
Q ss_pred ---------------------------------------CeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 216 ---------------------------------------PIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 216 ---------------------------------------~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
.....+|...|++++|+|+|++|++++.+..++.|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd 352 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD 352 (611)
T ss_dssp ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 012235888999999999999888877766665544
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-25 Score=274.44 Aligned_cols=274 Identities=21% Similarity=0.250 Sum_probs=205.7
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEE
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaS 112 (792)
+..+...+.+++|+++++++ ++++.|++|++|+..++ .+.+|...|.+++|+|++++|++
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l----------------~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 674 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRI----------------ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIAT 674 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEE----------------EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EecccccEEEEEECCCCCEE----------------EEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEE
Confidence 34566778888888887654 44567889999998766 45789999999999999999999
Q ss_pred EECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC-CCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCC
Q 036953 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL-RSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAE 190 (792)
Q Consensus 113 GS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~-dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpd 190 (792)
++.|++|+|||+.+++.+..+.+|...|.+++|+|. +..++++++.|++|++||+++++++..+ .|...|.+++|+|+
T Consensus 675 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 675 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 754 (1249)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS
T ss_pred EeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC
Confidence 999999999999999999999999999999999983 3458999999999999999999998887 58899999999999
Q ss_pred CcEEEEEc-CCeEEEEECCCCCcccCCe----------EEecCCCCeEEEEEccCCCeEEEEEe----eCccccCCCcee
Q 036953 191 GELLAVAS-GHKLYIWPYNNKEEASSPI----------IVLKTRRSLRAVHFHPHAAPFVLTAE----VNDLDSSDSSMT 255 (792)
Q Consensus 191 G~~LasgS-dd~V~IWDlrt~~~~~~~~----------~~~~h~~sVtsVafSPdG~~LlaS~s----~~dLrs~d~~~~ 255 (792)
+++|++++ ++.|++||+++.+...... ........+.+++|+|+|+.+++++. .|++........
T Consensus 755 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence 99999998 5569999998775432000 00112347889999999997777654 333333332222
Q ss_pred eecC-C---CcccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccc
Q 036953 256 RATS-P---GYLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEP 326 (792)
Q Consensus 256 l~t~-s---g~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~ 326 (792)
+... . ....+.+....++.+..+..+.++. ....+.+|...|.+++|+|+|+.++
T Consensus 835 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~---------------- 898 (1249)
T 3sfz_A 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL---------------- 898 (1249)
T ss_dssp EECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE----------------
T ss_pred EcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEE----------------
Confidence 2211 1 1223333333444444444444433 1224567999999999999999999
Q ss_pred cccccccCCCCCccccccccccccCC
Q 036953 327 SASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 327 s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+++.|++|.-|+...+
T Consensus 899 ----------s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 899 ----------TASDDQTIRVWETKKV 914 (1249)
T ss_dssp ----------EEETTSCEEEEEHHHH
T ss_pred ----------EEeCCCeEEEEEcccc
Confidence 7888899998886543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-25 Score=243.90 Aligned_cols=282 Identities=16% Similarity=0.212 Sum_probs=200.4
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEEcCCCC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAFSPDGR 108 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLafSPDG~ 108 (792)
+...+.+++|+|+++++++|. +....+|.......+..+..... ....+...|.+++|+|+++
T Consensus 63 h~~~V~~v~fspdg~~la~g~------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred CCCEEEEEEECCCCCEEEEEc------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence 556788999999998887762 33344444433333333221110 0012333599999999999
Q ss_pred EEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEc
Q 036953 109 TLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFH 188 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafS 188 (792)
+|++|+.|++|+|||+.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||++++++...+.+...+.+++|+
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~ 215 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 215 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEE
Confidence 999999999999999999999999999999999999999 8999999999999999999999999888888999999999
Q ss_pred C-CCcEEEEEc-CCeEEEEECCCCCcccCC----eEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCce--------
Q 036953 189 A-EGELLAVAS-GHKLYIWPYNNKEEASSP----IIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSM-------- 254 (792)
Q Consensus 189 p-dG~~LasgS-dd~V~IWDlrt~~~~~~~----~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~-------- 254 (792)
| ++++|++++ ++.|++||+++++..... .....|...|++++|+|+++.|++++.+..++.|+...
T Consensus 216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 295 (393)
T 1erj_A 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295 (393)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence 9 899999998 455999999887643210 01145788999999999999888777655555443221
Q ss_pred ---------eeecCCC---cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECC------CCcEEEE
Q 036953 255 ---------TRATSPG---YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSID------DSRIDLQ 311 (792)
Q Consensus 255 ---------~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~Sp------DGr~lv~ 311 (792)
.+..... ...+.+....++.+..+..+.++. ....+.+|...|+++++++ +|.+|+
T Consensus 296 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~- 374 (393)
T 1erj_A 296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA- 374 (393)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE-
T ss_pred CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEE-
Confidence 1111111 112222333344444444444443 1124556888888888775 677777
Q ss_pred ccccccCCCCccccccccccccCCCCCccccccccccccCCCC
Q 036953 312 HASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIP 354 (792)
Q Consensus 312 ~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p 354 (792)
+++.|++|.-|+....+|
T Consensus 375 -------------------------sgs~Dg~i~iW~~~~~~p 392 (393)
T 1erj_A 375 -------------------------TGSGDCKARIWKYKKIAP 392 (393)
T ss_dssp -------------------------EEETTSEEEEEEEEEC--
T ss_pred -------------------------EECCCCcEEECcccccCC
Confidence 899999999999766544
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=231.64 Aligned_cols=241 Identities=15% Similarity=0.149 Sum_probs=192.6
Q ss_pred CCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCC
Q 036953 22 RRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPP 94 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH 94 (792)
..+.+++|+....+.+. .+...+..+.|+++++ .+++++.|++|++|+..++ .+.+|
T Consensus 33 ~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~s~s~d~~i~vwd~~~~~~~~~~~~h 96 (304)
T 2ynn_A 33 YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN----------------WIIVGSDDFRIRVFNYNTGEKVVDFEAH 96 (304)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT----------------EEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCC----------------EEEEECCCCEEEEEECCCCcEEEEEeCC
Confidence 56778999987765443 4555677777777654 4566688999999998876 35789
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG-NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg-k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
.+.|.+++|+|++++|++|+.|++|+|||+.++ .....+.+|...|.+++|+|.++.+|++|+.|++|++||++++++.
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~ 176 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS
T ss_pred CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 999999999999999999999999999999887 4567789999999999999967789999999999999999887665
Q ss_pred EEe--ccCCCeeEEEEcC--CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 174 GSC--DFYRPIASIAFHA--EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 174 ~t~--~h~s~V~sVafSp--dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
..+ .+...+..++|++ ++++|++++ ++.|++||+++++.. .....|...|++++|+|+++.|++++.+.
T Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~---~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg--- 250 (304)
T 2ynn_A 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVFHPTLPIIISGSEDG--- 250 (304)
T ss_dssp EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE---EEEECCSSCEEEEEECSSSSEEEEEETTS---
T ss_pred ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc---eeeCCCCCCEEEEEECCCCCEEEEEcCCC---
Confidence 555 4667899999986 678999998 555999999987753 35667899999999999999777666554
Q ss_pred cCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCc--EEE
Q 036953 249 SSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSR--IDL 310 (792)
Q Consensus 249 s~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr--~lv 310 (792)
.+.+|+..++...... ..|...+|+++++|+|+ +++
T Consensus 251 --------------------~i~iWd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 251 --------------------TLKIWNSSTYKVEKTL------NVGLERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp --------------------CEEEEETTTCCEEEEE------CCSSSSEEEEEECTTCGGGCEE
T ss_pred --------------------eEEEEECCCCceeeec------cCCCccEEEEEECCCCCceEEE
Confidence 3555665555554333 33778999999999885 455
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=248.31 Aligned_cols=274 Identities=16% Similarity=0.179 Sum_probs=209.8
Q ss_pred eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEE
Q 036953 35 REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTL 110 (792)
Q Consensus 35 rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~L 110 (792)
+.+..+...+.++.|+|++++ |++++.|++|++|+..++ .+..|...|.+++|+|++++|
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~----------------l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNW----------------IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSC----------------EEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEE
T ss_pred ecccccccEEEEEEEcCCCCE----------------EEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEE
Confidence 445677788999999998764 455678999999998765 467899999999999999999
Q ss_pred EEEECCCeEEEEECCCCc-------EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe------c
Q 036953 111 ASTHGDHTVKIIDCQTGN-------CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC------D 177 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk-------~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~------~ 177 (792)
++|+.|+.|+|||+.+.. ....+.+|.+.|.++.|.|.++..|++|+.|++|++||+++++.+..+ .
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 999999999999987532 345678999999999999955678999999999999999999988776 3
Q ss_pred cCCCeeEEEEcC-CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc--
Q 036953 178 FYRPIASIAFHA-EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-- 253 (792)
Q Consensus 178 h~s~V~sVafSp-dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-- 253 (792)
|...|.+++|++ ++++|++++ |+.|++||++..... ......|...|++++|+|+++.|++++.+..++.|+..
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA--VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC--CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc--eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 678899999987 789999998 555999999854322 23566789999999999999988877776666655533
Q ss_pred ---eeeecCC----------CcccCCCCceEEEEecCCCEEEEeec--------c-CcccCCCceEEEeEECCCCcEEEE
Q 036953 254 ---MTRATSP----------GYLRYPPPAVFVANAQSGDHVSLAAE--------L-PLMSSLPFLIVPSVSIDDSRIDLQ 311 (792)
Q Consensus 254 ---~~l~t~s----------g~~~~p~~~~~l~~~ssG~~~~l~s~--------l-~~l~gh~~~VwdV~~SpDGr~lv~ 311 (792)
..+.... ....|.+....++.+..+..+.++.. + ....+|...|++++|+|||++|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~- 360 (380)
T 3iz6_a 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC- 360 (380)
T ss_dssp EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEE-
T ss_pred cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEE-
Confidence 1111110 12234344444444444444444431 0 12257999999999999999999
Q ss_pred ccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 312 HASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 312 ~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+|+.|++|.-|+....
T Consensus 361 -------------------------sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 361 -------------------------TGSWDKNLKIWAFSGH 376 (380)
T ss_dssp -------------------------EECTTSCEEEEECCSS
T ss_pred -------------------------EeeCCCCEEEEecCCC
Confidence 8999999999996543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=244.16 Aligned_cols=294 Identities=19% Similarity=0.270 Sum_probs=224.0
Q ss_pred CCCceEeeecccc--eeeCCCCceeeeEEeeCCCceEeecCCCcee-------------------------ecCCcEEEE
Q 036953 22 RRRARNVSRLLAH--REISPKTKYVPKRQWVDASKLKTCGPSDSSV-------------------------RDAKRGLVS 74 (792)
Q Consensus 22 ~s~~r~V~~l~~~--rels~~tk~V~s~aWspd~~lla~G~~a~sv-------------------------~d~~~~L~S 74 (792)
..+...+|+...+ +.+..+...+..++|+|++..+.++..+..+ ...+..+++
T Consensus 241 ~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t 320 (577)
T 2ymu_A 241 DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 320 (577)
T ss_dssp TTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEE
Confidence 4556788876443 2233566678889999998876655433221 112456788
Q ss_pred EeCCCeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC
Q 036953 75 WVEAESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE 151 (792)
Q Consensus 75 ~s~d~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~ 151 (792)
+..|+.+++|+.... .+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+| +++
T Consensus 321 ~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~ 398 (577)
T 2ymu_A 321 ASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQ 398 (577)
T ss_dssp EETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSS
T ss_pred EeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCC
Confidence 889999999998755 45789999999999999999999999999999995 5778889999999999999999 999
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEE
Q 036953 152 ILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAV 229 (792)
Q Consensus 152 lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsV 229 (792)
+|++++.|++|++||. +++.+..+ .|...|.+++|+|++++|++++. +.|++||..... ......|...|+++
T Consensus 399 ~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~----~~~~~~~~~~v~~~ 473 (577)
T 2ymu_A 399 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVRGV 473 (577)
T ss_dssp CEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCE----EEEEECCSSCEEEE
T ss_pred EEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCE----EEEEcCCCCCEEEE
Confidence 9999999999999996 45566555 68899999999999999999985 559999974432 23456789999999
Q ss_pred EEccCCCeEEEEEeeCccccCCCc----eeeecCCC---cccCCCCceEEEEecCCCEEEEee----ccCcccCCCceEE
Q 036953 230 HFHPHAAPFVLTAEVNDLDSSDSS----MTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA----ELPLMSSLPFLIV 298 (792)
Q Consensus 230 afSPdG~~LlaS~s~~dLrs~d~~----~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s----~l~~l~gh~~~Vw 298 (792)
+|+|+++.|++++.+..++.|+.. ..+....+ .+.+.+....++.+..+..+.++. .+..+.+|...|+
T Consensus 474 ~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~ 553 (577)
T 2ymu_A 474 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 553 (577)
T ss_dssp EECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEE
T ss_pred EEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEE
Confidence 999999988887776666554422 12222222 233444444555555555666654 1234678999999
Q ss_pred EeEECCCCcEEEEccccccCCCCccccccccccccCCCCCcccccccccc
Q 036953 299 PSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSME 348 (792)
Q Consensus 299 dV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~ 348 (792)
+++|+|||++|+ +++.|++|.-||
T Consensus 554 ~~~fs~dg~~l~--------------------------s~~~D~~i~~Wd 577 (577)
T 2ymu_A 554 GVAFSPDGQTIA--------------------------SASSDKTVKLWN 577 (577)
T ss_dssp EEEECTTSSCEE--------------------------EEETTSCEEEEC
T ss_pred EEEEcCCCCEEE--------------------------EEeCCCEEEEeC
Confidence 999999999999 788899988886
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-25 Score=233.48 Aligned_cols=225 Identities=15% Similarity=0.226 Sum_probs=189.5
Q ss_pred CCCceEeeecccceee---CCCCceeeeEEeeCCCceEeecCCCceee-----------------------------cCC
Q 036953 22 RRRARNVSRLLAHREI---SPKTKYVPKRQWVDASKLKTCGPSDSSVR-----------------------------DAK 69 (792)
Q Consensus 22 ~s~~r~V~~l~~~rel---s~~tk~V~s~aWspd~~lla~G~~a~sv~-----------------------------d~~ 69 (792)
..+.+.+|+....+.+ ..+...+..++|+|+++++++|..+..+. ..+
T Consensus 75 ~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (340)
T 1got_B 75 QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154 (340)
T ss_dssp TTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET
T ss_pred CCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC
Confidence 5577899987665443 35666789999999999887765443221 112
Q ss_pred cEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf 145 (792)
..+++++.|++|++||..++ .+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|++++|
T Consensus 155 ~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~ 234 (340)
T 1got_B 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234 (340)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEE
T ss_pred CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEE
Confidence 35788899999999999866 46789999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC---CCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEec
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSCDFY---RPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLK 221 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~---s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~ 221 (792)
+| ++++|++++.|++|++||+++++.+..+.+. ..|.+++|+|+|++|+++++ +.|++||+.+.+.. .....
T Consensus 235 ~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---~~~~~ 310 (340)
T 1got_B 235 FP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA---GVLAG 310 (340)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---EEEEC
T ss_pred cC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe---eEeec
Confidence 99 9999999999999999999999888887644 47999999999999999985 55999999887643 35567
Q ss_pred CCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 222 TRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 222 h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
|...|++++|+|++..|++++.+..|+.|
T Consensus 311 h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 99999999999999988887777766654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-25 Score=232.09 Aligned_cols=267 Identities=16% Similarity=0.175 Sum_probs=184.3
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC------c-CC-CCCCeEEEEEcCCCC
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP------L-VP-PPRSTIAAAFSPDGR 108 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~------L-~g-H~~~V~sLafSPDG~ 108 (792)
+..++..+.++.|+++ .+++++.|++|++|+...+. + .+ |...|.+++|+|+++
T Consensus 10 ~~~h~~~v~~~~~s~~------------------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 71 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG------------------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS 71 (330)
T ss_dssp EECCSSCEEEEEEETT------------------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS
T ss_pred eccCCCceeeeccCCC------------------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC
Confidence 4455666777777654 45566788889999887531 2 34 999999999999999
Q ss_pred EEEEEECCCeEEEEECCC-------CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC----cEEEEe-
Q 036953 109 TLASTHGDHTVKIIDCQT-------GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS----ECIGSC- 176 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~t-------gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg----~~v~t~- 176 (792)
+|++|+.|++|+|||+.. .+.+..+.+|...|.+++|+| ++++|++|+.|++|++||++.. +++..+
T Consensus 72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 999999999999999853 356778899999999999999 8999999999999999999532 455555
Q ss_pred ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccC--CCeEEEEEeeCccccCCCc
Q 036953 177 DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPH--AAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 177 ~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPd--G~~LlaS~s~~dLrs~d~~ 253 (792)
.|...|.+++|+|++++|++++ |+.|++||.++..... ......|...|++++|+|+ +..+++++.+..++.|+..
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC-VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE-EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeE-EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence 5889999999999999999999 4559999987653211 2345678999999999998 5556666655555554422
Q ss_pred e----------eeecCCC-------cccCCCCceEEEEecCCCEEEEee-cc-------CcccCCCc-eEEEeEECC--C
Q 036953 254 M----------TRATSPG-------YLRYPPPAVFVANAQSGDHVSLAA-EL-------PLMSSLPF-LIVPSVSID--D 305 (792)
Q Consensus 254 ~----------~l~t~sg-------~~~~p~~~~~l~~~ssG~~~~l~s-~l-------~~l~gh~~-~VwdV~~Sp--D 305 (792)
. ......+ ...|.+....+....++ .+.++. .. ....+|.. .|++++|+| +
T Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg-~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~ 308 (330)
T 2hes_X 230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADG-VLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNG 308 (330)
T ss_dssp EECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTS-CEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC----
T ss_pred CCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCC-EEEEEEcCCCceEEEeccccccccceEEEEEEecCCC
Confidence 1 1111111 12222233333333333 333332 11 12245776 899999998 6
Q ss_pred CcEEEEccccccCCCCccccccccccccCCCCCcccccccccccc
Q 036953 306 SRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETF 350 (792)
Q Consensus 306 Gr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~ 350 (792)
|++|+ +++.|++|.-|+..
T Consensus 309 ~~~la--------------------------s~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 309 KTILA--------------------------TGGDDGIVNFWSLE 327 (330)
T ss_dssp -CCEE--------------------------EEETTSEEEEEEC-
T ss_pred ceEEE--------------------------EecCCCcEEEEEec
Confidence 88888 88999999999864
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=227.51 Aligned_cols=242 Identities=13% Similarity=0.086 Sum_probs=184.9
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcC--CCCEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSP--DGRTL 110 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSP--DG~~L 110 (792)
.+...+..++|+++++++ ++++.|++|++|+.... .+.+|.+.|.+++|++ ++++|
T Consensus 7 ~h~~~V~~~~~s~~g~~l----------------as~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l 70 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRM----------------ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTIL 70 (297)
T ss_dssp SCSSCEEEEEECTTSSEE----------------EEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEE
T ss_pred CCcCceEEEEECCCCCEE----------------EEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEE
Confidence 456678889998887654 55578899999987532 4679999999999986 48999
Q ss_pred EEEECCCeEEEEECCCCc--EEEEecCCCCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCCc---EEEEeccCCCee
Q 036953 111 ASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHPLR--SEILASGSLDHEVRLWDANTSE---CIGSCDFYRPIA 183 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk--~v~~L~gH~~~VtsVafSP~d--g~lLaSgS~DgtVrLWDl~tg~---~v~t~~h~s~V~ 183 (792)
++|+.|++|+|||+.+++ .+..+.+|...|.+++|+| + +.+|++++.|++|++||++++. ......|...|.
T Consensus 71 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~ 149 (297)
T 2pm7_B 71 ASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149 (297)
T ss_dssp EEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE
T ss_pred EEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccc
Confidence 999999999999998874 5677889999999999999 5 7899999999999999998763 222336888999
Q ss_pred EEEEcCC-------------CcEEEEEc-CCeEEEEECCCCCcccC-CeEEecCCCCeEEEEEccCC---CeEEEEEeeC
Q 036953 184 SIAFHAE-------------GELLAVAS-GHKLYIWPYNNKEEASS-PIIVLKTRRSLRAVHFHPHA---APFVLTAEVN 245 (792)
Q Consensus 184 sVafSpd-------------G~~LasgS-dd~V~IWDlrt~~~~~~-~~~~~~h~~sVtsVafSPdG---~~LlaS~s~~ 245 (792)
+++|+|+ +++|++++ |+.|++||+++.+.... ...+..|...|++++|+|++ .+|++++.+.
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence 9999997 57899998 45599999987653211 12445689999999999996 5454444444
Q ss_pred ccccCCCceeeecCCCcccCCCCceEEEEecCCC--E-EEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCc
Q 036953 246 DLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGD--H-VSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNM 322 (792)
Q Consensus 246 dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~--~-~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v 322 (792)
.++.| ....+. . ..+. ...+|...|++++|+|+|++|+
T Consensus 230 ~v~iW-----------------------d~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~la------------ 270 (297)
T 2pm7_B 230 TCIIW-----------------------TQDNEQGPWKKTLL----KEEKFPDVLWRASWSLSGNVLA------------ 270 (297)
T ss_dssp CEEEE-----------------------EESSTTSCCEEEES----SSSCCSSCEEEEEECSSSCCEE------------
T ss_pred cEEEE-----------------------EeCCCCCccceeee----ecccCCCcEEEEEECCCCCEEE------------
Confidence 44433 322211 0 1111 1134788999999999999999
Q ss_pred cccccccccccCCCCCcccccccccccc
Q 036953 323 QIEPSASLHLQSDSNVEQDGTVPSMETF 350 (792)
Q Consensus 323 ~~~~s~~~q~~~~~sgs~D~tv~p~~~~ 350 (792)
+++.|++|.-|+..
T Consensus 271 --------------s~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 271 --------------LSGGDNKVTLWKEN 284 (297)
T ss_dssp --------------EEETTSCEEEEEEC
T ss_pred --------------EEcCCCcEEEEEEC
Confidence 78889999999853
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-24 Score=218.70 Aligned_cols=237 Identities=18% Similarity=0.208 Sum_probs=193.9
Q ss_pred CCceEeeecccceeeC--------CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----
Q 036953 23 RRARNVSRLLAHREIS--------PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---- 90 (792)
Q Consensus 23 s~~r~V~~l~~~rels--------~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---- 90 (792)
.+..++|+....+... .+...+..+.|++++++ ++++..++.|++|+....+
T Consensus 71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------l~~~~~d~~i~~~d~~~~~~~~~ 134 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT----------------LIVGGEASTLSIWDLAAPTPRIK 134 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE----------------EEEEESSSEEEEEECCCC--EEE
T ss_pred CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCE----------------EEEEcCCCcEEEEECCCCCccee
Confidence 5678889876543222 24456777888877654 4445677888888876542
Q ss_pred --cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 91 --LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 91 --L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.|+.|++||++
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred eecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECC
Confidence 467889999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred CCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 169 TSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 169 tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
+++.+..+.+...+.+++|+|++++|++++ ++.|++||+++.+. .....|...|++++|+|+++.+++++.+.
T Consensus 214 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-- 287 (337)
T 1gxr_A 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK----YQLHLHESCVLSLKFAYCGKWFVSTGKDN-- 287 (337)
T ss_dssp TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE----EEECCCSSCEEEEEECTTSSEEEEEETTS--
T ss_pred CCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe----EEEcCCccceeEEEECCCCCEEEEecCCC--
Confidence 999999999999999999999999999998 45599999988763 34567889999999999999777666443
Q ss_pred ccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 248 DSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 248 rs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.+.+|...++....... |...|.++.|+|+|++|+
T Consensus 288 ---------------------~i~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~ 322 (337)
T 1gxr_A 288 ---------------------LLNAWRTPYGASIFQSK-------ESSSVLSCDISVDDKYIV 322 (337)
T ss_dssp ---------------------EEEEEETTTCCEEEEEE-------CSSCEEEEEECTTSCEEE
T ss_pred ---------------------cEEEEECCCCeEEEEec-------CCCcEEEEEECCCCCEEE
Confidence 24445555554442222 778899999999999999
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=240.55 Aligned_cols=234 Identities=17% Similarity=0.235 Sum_probs=188.9
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
.+.+|...|++++|+|++++|++|+.|++|+|||+.+++.+..+.+|.+.|++++|+| ++++|++|+.|++|++||+.+
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTS
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Confidence 4678999999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 170 SECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 170 g~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
++++..+ .|...|.+++|+|++++|++++ |+.|++||++++.... ....|...|.++.|+|++..+++++.+..+
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK---TFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 9998887 5889999999999999999998 5559999999887543 456788999999999999988777765555
Q ss_pred ccCCC-----ceeeecCCC---cccCCC--------------------CceEEEEecCCCEEEEee-----ccCcccCCC
Q 036953 248 DSSDS-----SMTRATSPG---YLRYPP--------------------PAVFVANAQSGDHVSLAA-----ELPLMSSLP 294 (792)
Q Consensus 248 rs~d~-----~~~l~t~sg---~~~~p~--------------------~~~~l~~~ssG~~~~l~s-----~l~~l~gh~ 294 (792)
+.|+. ...+..... ...|.+ +..+++.+..+..+.++. ....+.+|.
T Consensus 259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~ 338 (410)
T 1vyh_C 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 338 (410)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC
Confidence 54432 222222111 111211 123455555555555554 123456799
Q ss_pred ceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 295 FLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 295 ~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
..|.++.|+|+|++|+ +++.|++|.-||...+.
T Consensus 339 ~~v~~v~~~~~g~~l~--------------------------s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 339 NWVRGVLFHSGGKFIL--------------------------SCADDKTLRVWDYKNKR 371 (410)
T ss_dssp SCEEEEEECSSSSCEE--------------------------EEETTTEEEEECCTTSC
T ss_pred CcEEEEEEcCCCCEEE--------------------------EEeCCCeEEEEECCCCc
Confidence 9999999999999999 88999999999976553
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-24 Score=232.29 Aligned_cols=251 Identities=15% Similarity=0.204 Sum_probs=188.7
Q ss_pred eCCCeEEEEeccCCC------cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCC
Q 036953 76 VEAESLRHLSAKYCP------LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLR 149 (792)
Q Consensus 76 s~d~sIrvWd~~t~~------L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~d 149 (792)
+.|++|++||..+++ +.+|...|++++|+|+|++|++|+.|++|+|||+.+++++..+.+|...+.++.|++
T Consensus 122 gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~-- 199 (420)
T 4gga_A 122 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-- 199 (420)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC--
Confidence 457889999988763 457888999999999999999999999999999999999999999999999988864
Q ss_pred CCEEEEEeCCCeEEEEECCCCc-EEEEe-ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccC-CeEEecCCCC
Q 036953 150 SEILASGSLDHEVRLWDANTSE-CIGSC-DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASS-PIIVLKTRRS 225 (792)
Q Consensus 150 g~lLaSgS~DgtVrLWDl~tg~-~v~t~-~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~-~~~~~~h~~s 225 (792)
.+|++|+.|+.+++||..... .+..+ .|...+..+.|++++++|++++. +.+++||....+.... ......|...
T Consensus 200 -~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~ 278 (420)
T 4gga_A 200 -YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 278 (420)
T ss_dssp -TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSC
T ss_pred -CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCc
Confidence 899999999999999998754 44444 58899999999999999999985 4599999988764432 2345568889
Q ss_pred eEEEEEccCCCeEEEEEe--------eCccccCCCceeeecCCC--cccC-CCCceEEEE-ecCCCEEEEee-----ccC
Q 036953 226 LRAVHFHPHAAPFVLTAE--------VNDLDSSDSSMTRATSPG--YLRY-PPPAVFVAN-AQSGDHVSLAA-----ELP 288 (792)
Q Consensus 226 VtsVafSPdG~~LlaS~s--------~~dLrs~d~~~~l~t~sg--~~~~-p~~~~~l~~-~ssG~~~~l~s-----~l~ 288 (792)
|.+++|+|++..++++++ .|++........+..... ...+ +.....+.. +..+..+.++. ...
T Consensus 279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~ 358 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 358 (420)
T ss_dssp EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE
Confidence 999999999888877643 333333322222222221 1111 111122211 11222233332 122
Q ss_pred cccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 289 LMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 289 ~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
.+.+|...|++++|+|||++|+ +++.|+||.-|+++...|.
T Consensus 359 ~l~gH~~~V~~l~~spdg~~l~--------------------------S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 359 ELKGHTSRVLSLTMSPDGATVA--------------------------SAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EECCCSSCEEEEEECTTSSCEE--------------------------EEETTTEEEEECCSCSSCC
T ss_pred EEcCCCCCEEEEEEcCCCCEEE--------------------------EEecCCeEEEEECCCCCcc
Confidence 4567999999999999999999 8999999999999988665
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-25 Score=241.28 Aligned_cols=195 Identities=14% Similarity=0.170 Sum_probs=154.1
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcC-CCCEEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSP-DGRTLA 111 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSP-DG~~La 111 (792)
++...|++++|+|... ..|++++.|+.|++||..++ .+.+|.+.|++++|+| ++++|+
T Consensus 117 ~~~~~V~~l~~~P~~~---------------~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~ 181 (435)
T 4e54_B 117 PFDRRATSLAWHPTHP---------------STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFY 181 (435)
T ss_dssp ECSSCEEEEEECSSCT---------------TCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEE
T ss_pred CCCCCEEEEEEeCCCC---------------CEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEE
Confidence 4455688999988532 13455678999999998654 3568999999999998 789999
Q ss_pred EEECCCeEEEEECCCCcEEEEecC--CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEc
Q 036953 112 STHGDHTVKIIDCQTGNCLKVLSG--HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFH 188 (792)
Q Consensus 112 SGS~DGtVrIWDl~tgk~v~~L~g--H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafS 188 (792)
+|+.|++|+|||+.++........ +...+.+++|+| ++++|++|+.|++|++||++... +..+ .|...|.+++|+
T Consensus 182 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 182 ASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALN 259 (435)
T ss_dssp EECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCB-CCCSBCCSSCEEEEEEC
T ss_pred EEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcce-eEEEecccceEEeeeec
Confidence 999999999999987654433333 345678999999 99999999999999999997644 4444 588999999999
Q ss_pred CCCc-EEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 189 AEGE-LLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 189 pdG~-~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
|+++ +|++++ |+.|+|||+++.+..........|...|++++|+|+|++|++++.+..|+.|
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iw 323 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEE
Confidence 9986 677777 5559999998877554334456688999999999999988888775555443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-23 Score=218.47 Aligned_cols=272 Identities=14% Similarity=0.111 Sum_probs=204.9
Q ss_pred eeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---------CcCCCCCCeEEEEEcCC
Q 036953 36 EISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---------PLVPPPRSTIAAAFSPD 106 (792)
Q Consensus 36 els~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---------~L~gH~~~V~sLafSPD 106 (792)
.+..++..|++++|+|+.. ..|++++.|++|++|+.... .+.+|...|.+++|+|+
T Consensus 33 tL~GH~~~V~~v~~sp~~~---------------~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d 97 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFP---------------DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 97 (340)
T ss_dssp EECCCSSCEEEEEECTTCT---------------TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT
T ss_pred EECCccCCEEEEEEeCCCC---------------CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC
Confidence 4567888999999998731 24566688899999987543 35789999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--ccCCCeeE
Q 036953 107 GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC--DFYRPIAS 184 (792)
Q Consensus 107 G~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~--~h~s~V~s 184 (792)
+++|++++.|+.|++|+............+...+..+.+++ ++++|++++.|+.+++||+......... .+...+..
T Consensus 98 g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~ 176 (340)
T 4aow_A 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 176 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccc
Confidence 99999999999999999999998888888999999999999 8899999999999999999876554433 47889999
Q ss_pred EEEcCCC--cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----eee
Q 036953 185 IAFHAEG--ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----MTR 256 (792)
Q Consensus 185 VafSpdG--~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~~l 256 (792)
++|++++ .++++++ ++.|++||+++.+.. .....|...|++++|+|+++.|++++.+..++.|+.. ..+
T Consensus 177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 253 (340)
T 4aow_A 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK---TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253 (340)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEccCCCCcEEEEEcCCCEEEEEECCCCcee---eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence 9999875 4677777 455999999988753 2456788999999999999988877765555444322 222
Q ss_pred ecCCC--cccCCCCceEEEEecCCCEEEEee--------------ccCcccCCCceEEEeEECCCCcEEEEccccccCCC
Q 036953 257 ATSPG--YLRYPPPAVFVANAQSGDHVSLAA--------------ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSS 320 (792)
Q Consensus 257 ~t~sg--~~~~p~~~~~l~~~ssG~~~~l~s--------------~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg 320 (792)
..... ...+.+...+++...+ ..+.++. ......+|...|++++|+|||++|+
T Consensus 254 ~~~~~v~~~~~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~---------- 322 (340)
T 4aow_A 254 DGGDIINALCFSPNRYWLCAATG-PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF---------- 322 (340)
T ss_dssp ECSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE----------
T ss_pred cCCceEEeeecCCCCceeeccCC-CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE----------
Confidence 22211 2223333344444333 3333332 0112346899999999999999999
Q ss_pred CccccccccccccCCCCCccccccccccccCCC
Q 036953 321 NMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 321 ~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
+++.|++|.-|++..|+
T Consensus 323 ----------------sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 323 ----------------AGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ----------------EEETTSCEEEEEEEC--
T ss_pred ----------------EEeCCCEEEEEeCCCcC
Confidence 89999999999988774
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=227.97 Aligned_cols=228 Identities=17% Similarity=0.262 Sum_probs=190.5
Q ss_pred CCCCceEeeecccce-----eeCCCCceeeeEEeeCCCceEeecCCCceee--------------------------cCC
Q 036953 21 LRRRARNVSRLLAHR-----EISPKTKYVPKRQWVDASKLKTCGPSDSSVR--------------------------DAK 69 (792)
Q Consensus 21 ~~s~~r~V~~l~~~r-----els~~tk~V~s~aWspd~~lla~G~~a~sv~--------------------------d~~ 69 (792)
...+.+++|+....+ .+..+...+.++.|++++.+++++..+..++ ..+
T Consensus 55 s~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg 134 (321)
T 3ow8_A 55 SLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134 (321)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS
T ss_pred cCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC
Confidence 356778999875443 2446677889999999988776665443322 123
Q ss_pred cEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf 145 (792)
..++++..++.+++|+...+ .+..|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|++++|
T Consensus 135 ~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 214 (321)
T 3ow8_A 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 214 (321)
T ss_dssp SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEE
T ss_pred CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEE
Confidence 45777788999999998765 35678889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCC
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTR 223 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~ 223 (792)
+| ++++|++++.|++|++||+++++.+..+ .|...|.+++|+|++++|++++. +.|++||+++++... ....|.
T Consensus 215 sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~---~~~~h~ 290 (321)
T 3ow8_A 215 SP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH---TFFDHQ 290 (321)
T ss_dssp CT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCS
T ss_pred cC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE---EEcCCC
Confidence 99 9999999999999999999999988887 48899999999999999999985 459999999887543 456789
Q ss_pred CCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
..|++++|+|+++.|++++.+..++.|+.
T Consensus 291 ~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 291 DQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999998888877777776653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-23 Score=215.10 Aligned_cols=264 Identities=15% Similarity=0.214 Sum_probs=192.2
Q ss_pred eeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC------cCCCCCCeEEEEEcCCCCEEEEEECCC
Q 036953 44 VPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP------LVPPPRSTIAAAFSPDGRTLASTHGDH 117 (792)
Q Consensus 44 V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~------L~gH~~~V~sLafSPDG~~LaSGS~DG 117 (792)
.+.++|++++ ++++| .|++|++||..+++ +.+|...|++++|+|++++|++|+.|+
T Consensus 28 ~~~l~WS~~~-~lAvg-----------------~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg 89 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-----------------LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 89 (318)
T ss_dssp CBCEEECTTS-EEEEE-----------------ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred ceEEEECCCC-EEEEE-----------------eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC
Confidence 5678888764 34333 47788888887653 357888999999999999999999999
Q ss_pred eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEEe-ccCCCeeEEEEcCCCcEEE
Q 036953 118 TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE-CIGSC-DFYRPIASIAFHAEGELLA 195 (792)
Q Consensus 118 tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~v~t~-~h~s~V~sVafSpdG~~La 195 (792)
+|+|||+.+++++..+.+|...+.++.+. +.++++++.++.+++|+..... .+..+ .|...+..+.|++++++|+
T Consensus 90 ~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 166 (318)
T 4ggc_A 90 EVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA 166 (318)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred cEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEE
Confidence 99999999999999999999988877664 4899999999999999998764 33443 6889999999999999999
Q ss_pred EEcC-CeEEEEECCCCCcccC-CeEEecCCCCeEEEEEccCCCeEEEEEe--------eCccccCCCceeeecCCC--cc
Q 036953 196 VASG-HKLYIWPYNNKEEASS-PIIVLKTRRSLRAVHFHPHAAPFVLTAE--------VNDLDSSDSSMTRATSPG--YL 263 (792)
Q Consensus 196 sgSd-d~V~IWDlrt~~~~~~-~~~~~~h~~sVtsVafSPdG~~LlaS~s--------~~dLrs~d~~~~l~t~sg--~~ 263 (792)
+++. +.|++||+++++.... ......+...|..+.++|++..++..+. +|+............... ..
T Consensus 167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~ 246 (318)
T 4ggc_A 167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI 246 (318)
T ss_dssp EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeee
Confidence 9985 4599999988765432 2344557889999999999887775443 222222221111111111 11
Q ss_pred cC-CCCceEEE-EecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCC
Q 036953 264 RY-PPPAVFVA-NAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDS 336 (792)
Q Consensus 264 ~~-p~~~~~l~-~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~ 336 (792)
.+ +.....+. .+..+..+.++. ....+.+|...|++++|+|||++|+
T Consensus 247 ~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~-------------------------- 300 (318)
T 4ggc_A 247 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA-------------------------- 300 (318)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE--------------------------
T ss_pred eecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE--------------------------
Confidence 11 11122221 122222333332 1224567999999999999999999
Q ss_pred CCccccccccccccCCCC
Q 036953 337 NVEQDGTVPSMETFPVIP 354 (792)
Q Consensus 337 sgs~D~tv~p~~~~~~~p 354 (792)
+++.|++|.-|+++...|
T Consensus 301 S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 301 SAAADETLRLWRCFELDP 318 (318)
T ss_dssp EEETTTEEEEECCSCCCC
T ss_pred EEecCCeEEEEECCCCCC
Confidence 899999999999998876
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=219.34 Aligned_cols=270 Identities=10% Similarity=0.072 Sum_probs=200.4
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEE
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaS 112 (792)
+..+...+.+++|+++++++ +++..++.|++|+..++ .+.+|...|.+++|+|++++|++
T Consensus 28 l~~h~~~v~~~~~s~~~~~l----------------~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 91 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLL----------------FSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVT 91 (369)
T ss_dssp EECCSSCEEEEEECTTSCEE----------------EEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEeeceEEEEEEcCCCCEE----------------EEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEE
Confidence 44567789999999987654 44467788888887655 35789999999999999999999
Q ss_pred EECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC-----CeEEEEECCCCcE-----------EEEe
Q 036953 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD-----HEVRLWDANTSEC-----------IGSC 176 (792)
Q Consensus 113 GS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D-----gtVrLWDl~tg~~-----------v~t~ 176 (792)
++.|+.|++||+.+++.+..+. |...|.+++|+| +++++++++.+ +.|++||+..... +..+
T Consensus 92 ~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp EETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred EeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence 9999999999999999999888 889999999999 99999999999 9999999976532 1112
Q ss_pred -ccCC--CeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 177 -DFYR--PIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 177 -~h~s--~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
.+.. .+.+++|+|++++|++++ ++.|++||+++.... ......|...|.+++|+|+++.|++++.+..+..++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 170 ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY--VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEE--EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe--EEEEecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence 2333 899999999999999988 556999999884322 2345568899999999999998888776544443332
Q ss_pred -----ceeeecCCC--cccCCCCceEEEEecCCC--------------EEEEee-----ccCcccCCCceEEEeEECCCC
Q 036953 253 -----SMTRATSPG--YLRYPPPAVFVANAQSGD--------------HVSLAA-----ELPLMSSLPFLIVPSVSIDDS 306 (792)
Q Consensus 253 -----~~~l~t~sg--~~~~p~~~~~l~~~ssG~--------------~~~l~s-----~l~~l~gh~~~VwdV~~SpDG 306 (792)
...+..... ...+.+....++...... .+.+.. ....+.+|...|.+++|+|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 327 (369)
T 3zwl_B 248 STLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG 327 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred CCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC
Confidence 222221111 222333333333332222 222222 112345699999999999999
Q ss_pred cEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 307 RIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 307 r~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
++|+ +++.|++|.-|+...+
T Consensus 328 ~~l~--------------------------s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 328 TSYA--------------------------SGGEDGFIRLHHFEKS 347 (369)
T ss_dssp SEEE--------------------------EEETTSEEEEEEECHH
T ss_pred CEEE--------------------------EEcCCCeEEEEECccc
Confidence 9999 7888999999987554
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.1e-24 Score=227.39 Aligned_cols=226 Identities=15% Similarity=0.244 Sum_probs=188.3
Q ss_pred CCCCceEeeeccccee---eCCCCceeeeEEeeCCCceEeecCCCceee-------------------------------
Q 036953 21 LRRRARNVSRLLAHRE---ISPKTKYVPKRQWVDASKLKTCGPSDSSVR------------------------------- 66 (792)
Q Consensus 21 ~~s~~r~V~~l~~~re---ls~~tk~V~s~aWspd~~lla~G~~a~sv~------------------------------- 66 (792)
...+...+|+....+. +......+..++|+|++..+++|..+..+.
T Consensus 83 s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 162 (354)
T 2pbi_B 83 SQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF 162 (354)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE
T ss_pred eCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEE
Confidence 3567789998755433 334556788999999999988876543321
Q ss_pred -cCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCC
Q 036953 67 -DAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRT 139 (792)
Q Consensus 67 -d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~ 139 (792)
..+..+++++.|+++++||..+++ +.+|...|.+++|+| ++++|++|+.|++|++||+.+++++..+.+|...
T Consensus 163 ~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~ 242 (354)
T 2pbi_B 163 TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD 242 (354)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred eCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC
Confidence 134478899999999999998763 578999999999988 5789999999999999999999999999999999
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecc---CCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccC
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF---YRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASS 215 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h---~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~ 215 (792)
|++++|+| ++++|++++.|++|++||+++++.+..+.. ...+.+++|+|++++|++++.+ .|++||+.+++..
T Consensus 243 v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~-- 319 (354)
T 2pbi_B 243 VNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV-- 319 (354)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE--
T ss_pred eEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE--
Confidence 99999999 899999999999999999999888777743 3468999999999999999854 5999999887743
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 216 PIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 216 ~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
.....|...|++++|+|+|++|++++.+..++.|
T Consensus 320 -~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 320 -SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp -EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred -EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 2456799999999999999988887776666554
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-24 Score=247.34 Aligned_cols=269 Identities=13% Similarity=0.097 Sum_probs=198.4
Q ss_pred eeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---------CcCCCCCCeEEEEEcCC
Q 036953 36 EISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---------PLVPPPRSTIAAAFSPD 106 (792)
Q Consensus 36 els~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---------~L~gH~~~V~sLafSPD 106 (792)
.+..++..|.+++|++++ ...|++++.|++|++|+.... .+.+|...|.+++|+|+
T Consensus 377 ~l~~H~~~V~~v~~~~~~---------------~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~ 441 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDN---------------ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD 441 (694)
T ss_dssp EEECCSSCEEEEECCTTC---------------CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT
T ss_pred hcccCCceeEEEEecCCC---------------CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC
Confidence 345666777777776653 235677889999999987642 35789999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ccCCCe
Q 036953 107 GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC----DFYRPI 182 (792)
Q Consensus 107 G~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~----~h~s~V 182 (792)
+++|++|+.|++|+|||+.+++++..+.+|...|.+++|+| ++++|++++.|++|++||+......... .|...|
T Consensus 442 g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 99999999999999999999999999999999999999999 9999999999999999998765443332 377889
Q ss_pred eEEEEcCCC--cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----e
Q 036953 183 ASIAFHAEG--ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----M 254 (792)
Q Consensus 183 ~sVafSpdG--~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~ 254 (792)
.+++|+|++ .+|++++ ++.|++||+++.+.. .....|...|++++|+|+++.|++++.+..|+.|+.. .
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~---~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~ 597 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR---STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 597 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE---EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE---EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 999999987 5788888 555999999887643 2456789999999999999988877776666555432 1
Q ss_pred eeecCCC--cccCCCCceEEEEecCCCEEEEeec------------------------cCcccCCCceEEEeEECCCCcE
Q 036953 255 TRATSPG--YLRYPPPAVFVANAQSGDHVSLAAE------------------------LPLMSSLPFLIVPSVSIDDSRI 308 (792)
Q Consensus 255 ~l~t~sg--~~~~p~~~~~l~~~ssG~~~~l~s~------------------------l~~l~gh~~~VwdV~~SpDGr~ 308 (792)
.+..... ...+.+....++...++ .+.++.- ......+...+.+++|+|||++
T Consensus 598 ~~~~~~~v~~~~~sp~~~~l~~~~~~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~ 676 (694)
T 3dm0_A 598 SLEANSVIHALCFSPNRYWLCAATEH-GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGST 676 (694)
T ss_dssp CCBCSSCEEEEEECSSSSEEEEEETT-EEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSE
T ss_pred EecCCCcEEEEEEcCCCcEEEEEcCC-CEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCE
Confidence 1111111 22233333333332222 2222220 0011123345788999999999
Q ss_pred EEEccccccCCCCccccccccccccCCCCCcccccccccccc
Q 036953 309 DLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETF 350 (792)
Q Consensus 309 lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~ 350 (792)
|+ +|+.|++|.-|++.
T Consensus 677 l~--------------------------sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 677 LF--------------------------SGYTDGVIRVWGIG 692 (694)
T ss_dssp EE--------------------------EEETTSEEEEEEC-
T ss_pred EE--------------------------EEcCCCeEEEEecc
Confidence 99 89999999999864
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-24 Score=232.02 Aligned_cols=209 Identities=15% Similarity=0.162 Sum_probs=169.6
Q ss_pred CCCceEeeecccceeeC-------CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----C
Q 036953 22 RRRARNVSRLLAHREIS-------PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----P 90 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels-------~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~ 90 (792)
..+.+++|+....+.+. .+...+.+++|+|++++ |++++.|++|++||..++ .
T Consensus 101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~----------------l~sgs~d~~i~iwd~~~~~~~~~ 164 (344)
T 4gqb_B 101 DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ----------------AVSGSKDICIKVWDLAQQVVLSS 164 (344)
T ss_dssp TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSE----------------EEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCE----------------EEEEeCCCeEEEEECCCCcEEEE
Confidence 45678999886654322 35567888888888664 455678899999998876 4
Q ss_pred cCCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEec--CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 91 LVPPPRSTIAAAFSPDG-RTLASTHGDHTVKIIDCQTGNCLKVLS--GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG-~~LaSGS~DGtVrIWDl~tgk~v~~L~--gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
+.+|...|++++|++++ ..|++++.|++|+|||+.++++...+. .|...+.+++|+|.++++|++|+.|++|++||+
T Consensus 165 ~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred EcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 67999999999999987 478999999999999999999888775 456679999999977889999999999999999
Q ss_pred CCCcEEEEe-ccCCCeeEEEEcCCC-cEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-
Q 036953 168 NTSECIGSC-DFYRPIASIAFHAEG-ELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE- 243 (792)
Q Consensus 168 ~tg~~v~t~-~h~s~V~sVafSpdG-~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s- 243 (792)
++++++..+ .|...|++++|+|++ ++|++++. +.|+|||+++++. ....+|.+.|++++|+|+++.++++++
T Consensus 245 ~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~----~~~~~H~~~V~~v~~sp~~~~llas~s~ 320 (344)
T 4gqb_B 245 KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL----FRSQAHRDFVRDATWSPLNHSLLTTVGW 320 (344)
T ss_dssp CC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE----EEECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE----EEEcCCCCCEEEEEEeCCCCeEEEEEcC
Confidence 999998887 488999999999998 57888884 5599999988763 346779999999999999998887765
Q ss_pred eCccccC
Q 036953 244 VNDLDSS 250 (792)
Q Consensus 244 ~~dLrs~ 250 (792)
+..|..|
T Consensus 321 D~~v~~w 327 (344)
T 4gqb_B 321 DHQVVHH 327 (344)
T ss_dssp TSCEEEE
T ss_pred CCeEEEE
Confidence 5545443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-24 Score=227.70 Aligned_cols=288 Identities=11% Similarity=0.105 Sum_probs=209.9
Q ss_pred CCCCceEeeeccccee---eC--CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC----C--
Q 036953 21 LRRRARNVSRLLAHRE---IS--PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY----C-- 89 (792)
Q Consensus 21 ~~s~~r~V~~l~~~re---ls--~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t----~-- 89 (792)
...+..++|+...... +. .+...+..++|++++.++ +++..++.|++|+... .
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l----------------~~~~~dg~v~vw~~~~~~~~~~~ 105 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKII----------------AGALDNGSLELYSTNEANNAINS 105 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCE----------------EEEESSSCEEEECCSSTTSCCCE
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeE----------------EEEccCCeEEEeecccccccccc
Confidence 3556789999876542 21 345578899998887654 4446678889998876 1
Q ss_pred --CcCCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCc------EEE---EecCCCCCcEEEEEccCCCCEEEEEe
Q 036953 90 --PLVPPPRSTIAAAFSPD-GRTLASTHGDHTVKIIDCQTGN------CLK---VLSGHRRTPWVVRFHPLRSEILASGS 157 (792)
Q Consensus 90 --~L~gH~~~V~sLafSPD-G~~LaSGS~DGtVrIWDl~tgk------~v~---~L~gH~~~VtsVafSP~dg~lLaSgS 157 (792)
.+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++ ... .+.+|...|.+++|+|+++.+|++++
T Consensus 106 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 185 (416)
T 2pm9_A 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG 185 (416)
T ss_dssp EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES
T ss_pred hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc
Confidence 36789999999999998 8999999999999999998876 332 34679999999999993389999999
Q ss_pred CCCeEEEEECCCCcEEEEecc-------CCCeeEEEEcCCC-cEEEEEcCC----eEEEEECCCCCcccCCeEEe-cCCC
Q 036953 158 LDHEVRLWDANTSECIGSCDF-------YRPIASIAFHAEG-ELLAVASGH----KLYIWPYNNKEEASSPIIVL-KTRR 224 (792)
Q Consensus 158 ~DgtVrLWDl~tg~~v~t~~h-------~s~V~sVafSpdG-~~LasgSdd----~V~IWDlrt~~~~~~~~~~~-~h~~ 224 (792)
.|+.|++||+++++++..+.. ...+.+++|+|++ .+|++++++ .|++||+++.+... .... .|..
T Consensus 186 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~--~~~~~~~~~ 263 (416)
T 2pm9_A 186 SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL--QTLNQGHQK 263 (416)
T ss_dssp SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS--BCCCSCCSS
T ss_pred CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc--EEeecCccC
Confidence 999999999999999888853 6889999999997 688888844 79999998864321 2334 6889
Q ss_pred CeEEEEEcc-CCCeEEEEEeeCccccCCC-----ceeeecCCC---cccCCCCc-eEEEEecCCCEEEEeecc-----Cc
Q 036953 225 SLRAVHFHP-HAAPFVLTAEVNDLDSSDS-----SMTRATSPG---YLRYPPPA-VFVANAQSGDHVSLAAEL-----PL 289 (792)
Q Consensus 225 sVtsVafSP-dG~~LlaS~s~~dLrs~d~-----~~~l~t~sg---~~~~p~~~-~~l~~~ssG~~~~l~s~l-----~~ 289 (792)
.|++++|+| +++.|++++.+..++.|+. ...+....+ ...|.+.. ..++....+..+.++.-. ..
T Consensus 264 ~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 264 GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence 999999999 8887777776555554442 233332222 33344433 455555555555555410 00
Q ss_pred -----------------------------------ccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccC
Q 036953 290 -----------------------------------MSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQS 334 (792)
Q Consensus 290 -----------------------------------l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~ 334 (792)
...|...+..++|+|||++++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la------------------------ 399 (416)
T 2pm9_A 344 EQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQ------------------------ 399 (416)
T ss_dssp C----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEEC------------------------
T ss_pred cccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEE------------------------
Confidence 011455666777788888777
Q ss_pred CCCCccccccccccccCC
Q 036953 335 DSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 335 ~~sgs~D~tv~p~~~~~~ 352 (792)
+++.|++|.-|++..+
T Consensus 400 --~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 400 --ITPDGKGVSITNPKIS 415 (416)
T ss_dssp --BCTTSSCBCCBCCCCC
T ss_pred --EeCCCCeEEEEEeccC
Confidence 7889999999997654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-23 Score=221.35 Aligned_cols=252 Identities=13% Similarity=0.125 Sum_probs=185.9
Q ss_pred eeCCCCceeeeEEeeCCC-ceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC------cCCCCCCeEEEEEcC-CC
Q 036953 36 EISPKTKYVPKRQWVDAS-KLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP------LVPPPRSTIAAAFSP-DG 107 (792)
Q Consensus 36 els~~tk~V~s~aWspd~-~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~------L~gH~~~V~sLafSP-DG 107 (792)
.+..+...+.+++|++++ + .+++++.|+.|++|+..... +.+|...|.+++|+| ++
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~----------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 131 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPT----------------TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT 131 (383)
T ss_dssp EECCCSSCEEEEEECSSCTT----------------EEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE
T ss_pred eccCCCCCEEEEEECCCCCC----------------EEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC
Confidence 444666788888888886 4 44555778899999987552 247999999999999 78
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEecCC---CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCee
Q 036953 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGH---RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIA 183 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk~v~~L~gH---~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~ 183 (792)
++|++++.|+.|++||+.+ +.+..+..| ...|.+++|+| ++++|++++.|+.|++||++ ++++..+ .|...|.
T Consensus 132 ~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVT 208 (383)
T ss_dssp EEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEE
T ss_pred CEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEE
Confidence 9999999999999999985 556666544 48899999999 99999999999999999994 5666666 5889999
Q ss_pred EEEEcCCCc-EEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEcc-CCCeEEEEEee-----CccccCCCcee
Q 036953 184 SIAFHAEGE-LLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP-HAAPFVLTAEV-----NDLDSSDSSMT 255 (792)
Q Consensus 184 sVafSpdG~-~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP-dG~~LlaS~s~-----~dLrs~d~~~~ 255 (792)
+++|+|+++ +|++++ ++.|++||+++.+..........|...|++++|+| +++.|++++.+ |+++.......
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 999999998 888888 55699999988554332344557899999999999 99988877764 44444333333
Q ss_pred eecCCC---------c-----------ccC---------CCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC
Q 036953 256 RATSPG---------Y-----------LRY---------PPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS 306 (792)
Q Consensus 256 l~t~sg---------~-----------~~~---------p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG 306 (792)
+..... . ..+ ....+.+|+..++..+....+ ..|...+..++|+|||
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~----~~~~~~~~~~~~s~~g 364 (383)
T 3ei3_B 289 IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRD----PNAAGIISLNKFSPTG 364 (383)
T ss_dssp EEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECB----TTBCSCCCEEEECTTS
T ss_pred cccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecC----CCCCceEEEEEEecCc
Confidence 221110 0 001 123455666555555333321 1145677778999999
Q ss_pred cEEE
Q 036953 307 RIDL 310 (792)
Q Consensus 307 r~lv 310 (792)
++|+
T Consensus 365 ~~l~ 368 (383)
T 3ei3_B 365 DVLA 368 (383)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 9999
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=230.55 Aligned_cols=246 Identities=13% Similarity=0.066 Sum_probs=181.6
Q ss_pred CCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcC--CCCE
Q 036953 38 SPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSP--DGRT 109 (792)
Q Consensus 38 s~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSP--DG~~ 109 (792)
..+...+.+++|+++++++ ++++.|++|++|+...+ .+.+|...|.+++|++ ++++
T Consensus 10 ~~H~~~V~~v~~s~~g~~l----------------asgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~ 73 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRL----------------ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNI 73 (316)
T ss_dssp ----CCEEEEEECGGGCEE----------------EEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSC
T ss_pred ccccCeEEEeeEcCCCCEE----------------EEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCE
Confidence 3566788999998886644 55577888888887643 3679999999999986 4899
Q ss_pred EEEEECCCeEEEEECCCC--cEEEEecCCCCCcEEEEEccC-CCCEEEEEeCCCeEEEEECCCCcEE---EEe-ccCCCe
Q 036953 110 LASTHGDHTVKIIDCQTG--NCLKVLSGHRRTPWVVRFHPL-RSEILASGSLDHEVRLWDANTSECI---GSC-DFYRPI 182 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tg--k~v~~L~gH~~~VtsVafSP~-dg~lLaSgS~DgtVrLWDl~tg~~v---~t~-~h~s~V 182 (792)
|++|+.|++|+|||+.++ +.+..+.+|...|++++|+|+ ++.+|++++.|++|++||++++... ..+ .|...+
T Consensus 74 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v 153 (316)
T 3bg1_A 74 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC 153 (316)
T ss_dssp EEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCB
T ss_pred EEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCc
Confidence 999999999999999887 467788899999999999993 1789999999999999999876422 222 477889
Q ss_pred eEEEEcCC-----------------CcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC----CeEEE
Q 036953 183 ASIAFHAE-----------------GELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA----APFVL 240 (792)
Q Consensus 183 ~sVafSpd-----------------G~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG----~~Lla 240 (792)
.+++|+|+ +++|++++ |+.|++||++..........+..|...|++++|+|++ ..|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las 233 (316)
T 3bg1_A 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS 233 (316)
T ss_dssp CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE
T ss_pred ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE
Confidence 99999997 46889888 4559999997553211122345688999999999987 55555
Q ss_pred EEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCC
Q 036953 241 TAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSS 320 (792)
Q Consensus 241 S~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg 320 (792)
++.+..++.|+ ..+..... .....+..|...|++++|+|+|++|+
T Consensus 234 ~s~D~~v~iw~-----------------------~~~~~~~~--~~~~~~~~~~~~v~~v~~sp~g~~la---------- 278 (316)
T 3bg1_A 234 CSQDGRVFIWT-----------------------CDDASSNT--WSPKLLHKFNDVVWHVSWSITANILA---------- 278 (316)
T ss_dssp EETTCEEEEEE-----------------------CSSTTCCC--CBCCEEEECSSCEEEEEECTTTCCEE----------
T ss_pred EcCCCeEEEEE-----------------------ccCccccc--hhhhhhhcCCCcEEEEEEcCCCCEEE----------
Confidence 55455444432 21100000 00011223778999999999999999
Q ss_pred CccccccccccccCCCCCcccccccccccc
Q 036953 321 NMQIEPSASLHLQSDSNVEQDGTVPSMETF 350 (792)
Q Consensus 321 ~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~ 350 (792)
+++.|++|.-|+..
T Consensus 279 ----------------s~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 279 ----------------VSGGDNKVTLWKES 292 (316)
T ss_dssp ----------------EEESSSCEEEEEEC
T ss_pred ----------------EEcCCCeEEEEEEC
Confidence 78899999999853
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=216.47 Aligned_cols=274 Identities=14% Similarity=0.077 Sum_probs=193.1
Q ss_pred eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC--------CcCCCCCCeEEEEEcC-
Q 036953 35 REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC--------PLVPPPRSTIAAAFSP- 105 (792)
Q Consensus 35 rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~--------~L~gH~~~V~sLafSP- 105 (792)
+.+..+...+.+++|++++++++ ++..|+.|++|+.... .+.+|...|.+++|+|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~----------------~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 68 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVA----------------TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEE----------------EEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCG
T ss_pred ccCcccccceeEEEEcCCCCEEE----------------EeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCC
Confidence 34456777899999999876554 4467788888887643 2358999999999999
Q ss_pred -CCCEEEEEECCCeEEEEECCCC---------cEEEEecCCCCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCCcEE
Q 036953 106 -DGRTLASTHGDHTVKIIDCQTG---------NCLKVLSGHRRTPWVVRFHPLR--SEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 106 -DG~~LaSGS~DGtVrIWDl~tg---------k~v~~L~gH~~~VtsVafSP~d--g~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
|+++|++++.|+.|++||+.++ +.+..+.+|...|.+++|+| + +++|++++.|++|++||+++++.+
T Consensus 69 ~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHh
Confidence 6999999999999999999887 56788889999999999999 7 899999999999999999987644
Q ss_pred EEe--------------ccCCCeeEEEEcCC---CcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCC
Q 036953 174 GSC--------------DFYRPIASIAFHAE---GELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 174 ~t~--------------~h~s~V~sVafSpd---G~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG 235 (792)
..+ .+...+.+++|+|+ +.+|++++.++ +.+|+....+... ......|...|++++|+|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV-AAKLPGHKSLIRSISWAPSI 226 (351)
T ss_dssp TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE-EEECCCCCSCEEEEEECCCS
T ss_pred ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee-eeecCCCCcceeEEEECCCC
Confidence 322 35678999999997 88999998666 7666665554211 23345688999999999998
Q ss_pred ----CeEEEEEeeCccccCCCcee-----eecCCCccc---CCCCceEEEEec----CCCEEE-----EeeccCcccCCC
Q 036953 236 ----APFVLTAEVNDLDSSDSSMT-----RATSPGYLR---YPPPAVFVANAQ----SGDHVS-----LAAELPLMSSLP 294 (792)
Q Consensus 236 ----~~LlaS~s~~dLrs~d~~~~-----l~t~sg~~~---~p~~~~~l~~~s----sG~~~~-----l~s~l~~l~gh~ 294 (792)
+.|++++.+..++.|+.... ......... ............ ...... .......+.+|.
T Consensus 227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 227 GRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp SCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred CCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 55666665555555543321 100000000 000000000000 000000 001223456799
Q ss_pred ceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 295 FLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 295 ~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
..|.+++|+|+|++|+ +++.|++|.-|+...+
T Consensus 307 ~~v~~~~~s~~~~~l~--------------------------s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILS--------------------------SAGDDGKVRLWKATYS 338 (351)
T ss_dssp SCEEEEEECSSSCCEE--------------------------EEETTSCEEEEEECTT
T ss_pred ccEEEEEEcCCCCEEE--------------------------EecCCCcEEEEecCcC
Confidence 9999999999999999 8899999999998765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=219.07 Aligned_cols=271 Identities=18% Similarity=0.180 Sum_probs=197.8
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----c-----CCCCCCeEEEEEcCC---
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----L-----VPPPRSTIAAAFSPD--- 106 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L-----~gH~~~V~sLafSPD--- 106 (792)
.+...+.+++|+|+.. ++...++....++.|++|+..++. + ..|...|++++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~------------~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 83 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSK------------EGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNT 83 (366)
T ss_dssp TTCSCEEEEEECTTCC------------TTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTT
T ss_pred CCCCceEEEEEecccC------------CCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCC
Confidence 5667899999998621 223344444555577777766432 1 237788999999998
Q ss_pred -CCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ccCCC
Q 036953 107 -GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC----DFYRP 181 (792)
Q Consensus 107 -G~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~----~h~s~ 181 (792)
+++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|.++++|++++.|++|++||+++++.+..+ .+...
T Consensus 84 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 84 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163 (366)
T ss_dssp CCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred CCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence 6799999999999999999999999999999999999999977899999999999999999999998887 58899
Q ss_pred eeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccC-------------------------CeEEecCCCCeEEEEEccCC
Q 036953 182 IASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASS-------------------------PIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 182 V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~-------------------------~~~~~~h~~sVtsVafSPdG 235 (792)
|.+++|+|++++|++++ ++.|++||+++.+.... ......|...|.+++|+ +
T Consensus 164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 241 (366)
T 3k26_A 164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G 241 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred eeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence 99999999999999998 45599999987653210 00112278899999999 6
Q ss_pred CeEEEEEeeCccccCC-----C--------------ceeeecCCC---cccCCCC--ceEEEEecCCCEEEEeeccC---
Q 036953 236 APFVLTAEVNDLDSSD-----S--------------SMTRATSPG---YLRYPPP--AVFVANAQSGDHVSLAAELP--- 288 (792)
Q Consensus 236 ~~LlaS~s~~dLrs~d-----~--------------~~~l~t~sg---~~~~p~~--~~~l~~~ssG~~~~l~s~l~--- 288 (792)
+.+++++.+..++.|+ . ...+..... ...+.+. ...++.+..+..+.++.-..
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 6666665544333332 2 011111111 2233333 44555555545555544111
Q ss_pred ------cccCC--CceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccc
Q 036953 289 ------LMSSL--PFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 289 ------~l~gh--~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
.+.+| ...|++++|+|+|++|+ +++.|++|.-||.
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--------------------------s~~~dg~i~iwd~ 364 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILI--------------------------AVCDDASIWRWDR 364 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEECTTSSEEE--------------------------EEETTSEEEEEEC
T ss_pred ccccceEEcccccCCceEEEEeCCCCCeEE--------------------------EEeCCCEEEEEEe
Confidence 45556 79999999999999999 7888888888875
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-23 Score=230.50 Aligned_cols=295 Identities=20% Similarity=0.291 Sum_probs=222.7
Q ss_pred CCCceEeeecccc--eeeCCCCceeeeEEeeCCCceEeecCCCcee--e-----------------------cCCcEEEE
Q 036953 22 RRRARNVSRLLAH--REISPKTKYVPKRQWVDASKLKTCGPSDSSV--R-----------------------DAKRGLVS 74 (792)
Q Consensus 22 ~s~~r~V~~l~~~--rels~~tk~V~s~aWspd~~lla~G~~a~sv--~-----------------------d~~~~L~S 74 (792)
..+.+.+|+...+ +.+..+...+..++|++++.+++++..+..+ + ..+..+++
T Consensus 200 ~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~ 279 (577)
T 2ymu_A 200 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIAS 279 (577)
T ss_dssp TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEE
Confidence 4566888875433 2333566778899999998876665433322 1 12345778
Q ss_pred EeCCCeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC
Q 036953 75 WVEAESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE 151 (792)
Q Consensus 75 ~s~d~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~ 151 (792)
+..++.+++|+.... .+.+|...|.+++|+|+++.|++++.|++|++||+. ++.+..+.+|...|.+++|+| +++
T Consensus 280 ~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~-~g~ 357 (577)
T 2ymu_A 280 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSP-DGQ 357 (577)
T ss_dssp EETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSS
T ss_pred EeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECC-CCC
Confidence 889999999997644 467899999999999999999999999999999976 455778889999999999999 999
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEE
Q 036953 152 ILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAV 229 (792)
Q Consensus 152 lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsV 229 (792)
+|++++.|++|++||. +++.+..+ .|...|.+++|+|++++|++++. +.|++||... +. ......|...|+++
T Consensus 358 ~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~---~~~~~~~~~~v~~~ 432 (577)
T 2ymu_A 358 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QL---LQTLTGHSSSVWGV 432 (577)
T ss_dssp EEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-CE---EEEEECCSSCEEEE
T ss_pred EEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CE---EEEecCCCCCeEEE
Confidence 9999999999999996 45666665 58899999999999999999985 4599999643 32 23456789999999
Q ss_pred EEccCCCeEEEEEeeCccccCCCc----eeeecCCC---cccCCCCceEEEEecCCCEEEEee----ccCcccCCCceEE
Q 036953 230 HFHPHAAPFVLTAEVNDLDSSDSS----MTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA----ELPLMSSLPFLIV 298 (792)
Q Consensus 230 afSPdG~~LlaS~s~~dLrs~d~~----~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s----~l~~l~gh~~~Vw 298 (792)
+|+|+++.+++++.+..+..|+.. ..+..... ...+.+....++.+..+..+.++. ....+.+|...|.
T Consensus 433 ~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~ 512 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 512 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEE
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEE
Confidence 999999988877776655544322 12222221 233444555555555555555554 1234567999999
Q ss_pred EeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccc
Q 036953 299 PSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 299 dV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
+++|+|||++|+ +++.|++|.-||.
T Consensus 513 ~l~~s~dg~~l~--------------------------s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 513 GVAFSPDGQTIA--------------------------SASDDKTVKLWNR 537 (577)
T ss_dssp EEEECTTSSCEE--------------------------EEETTSEEEEECT
T ss_pred EEEEcCCCCEEE--------------------------EEECcCEEEEEeC
Confidence 999999999999 7889999999984
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-22 Score=210.52 Aligned_cols=237 Identities=11% Similarity=0.094 Sum_probs=191.4
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----c-----CCCCCCeEEEEEcCCCCE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----L-----VPPPRSTIAAAFSPDGRT 109 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L-----~gH~~~V~sLafSPDG~~ 109 (792)
.+...+..+.|+++++++++ +. ++.+++|+..... + .+|...|.+++|+|++++
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~----------------~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 111 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYT----------------GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEE----------------EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE
T ss_pred cCCCceEEEEEecCCcEEEE----------------cC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCE
Confidence 35556778888877665433 34 6788899886542 1 278899999999999999
Q ss_pred EEEEECCCeEEEEECCCCc--EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEE
Q 036953 110 LASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIA 186 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tgk--~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVa 186 (792)
|++++.|+.|++||+.+++ ....+..|...|.+++|+| +++++++++.|+.|++||+++++.+..+. |...+.+++
T Consensus 112 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 190 (337)
T 1gxr_A 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190 (337)
T ss_dssp EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEE
Confidence 9999999999999999887 6677889999999999999 99999999999999999999999888885 788999999
Q ss_pred EcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccC
Q 036953 187 FHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRY 265 (792)
Q Consensus 187 fSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~ 265 (792)
|+|++++|++++ ++.|++||+++.+.. ....+...+.+++|+|+++.+++++.+..
T Consensus 191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~------------------- 247 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDNTVRSWDLREGRQL----QQHDFTSQIFSLGYCPTGEWLAVGMESSN------------------- 247 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEECTTSSEEEEEETTSC-------------------
T ss_pred ECCCCCEEEEEecCCcEEEEECCCCceE----eeecCCCceEEEEECCCCCEEEEEcCCCc-------------------
Confidence 999999999998 556999999887643 34567888999999999998877664433
Q ss_pred CCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccc
Q 036953 266 PPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVP 345 (792)
Q Consensus 266 p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~ 345 (792)
+.+|....+.... +..|...|.++.|+|+|++++ +++.|++|.
T Consensus 248 ----i~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~--------------------------~~~~dg~i~ 290 (337)
T 1gxr_A 248 ----VEVLHVNKPDKYQ-------LHLHESCVLSLKFAYCGKWFV--------------------------STGKDNLLN 290 (337)
T ss_dssp ----EEEEETTSSCEEE-------ECCCSSCEEEEEECTTSSEEE--------------------------EEETTSEEE
T ss_pred ----EEEEECCCCCeEE-------EcCCccceeEEEECCCCCEEE--------------------------EecCCCcEE
Confidence 3334433433322 234888999999999999999 677888999
Q ss_pred cccccCCC
Q 036953 346 SMETFPVI 353 (792)
Q Consensus 346 p~~~~~~~ 353 (792)
-|+...++
T Consensus 291 ~~~~~~~~ 298 (337)
T 1gxr_A 291 AWRTPYGA 298 (337)
T ss_dssp EEETTTCC
T ss_pred EEECCCCe
Confidence 99876653
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=225.25 Aligned_cols=208 Identities=20% Similarity=0.338 Sum_probs=167.7
Q ss_pred CcCCCCC-CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE--E-EecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEE
Q 036953 90 PLVPPPR-STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL--K-VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLW 165 (792)
Q Consensus 90 ~L~gH~~-~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v--~-~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLW 165 (792)
++.+|.. .|.+++|+|+|++|++|+.|++|+|||+.+++.. . ...+|...|.+++|+| ++++|++++.|++|++|
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIW 88 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcEEEE
Confidence 4567887 8999999999999999999999999999887643 2 2368999999999999 99999999999999999
Q ss_pred ECCCCc--EEEEe-ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 166 DANTSE--CIGSC-DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 166 Dl~tg~--~v~t~-~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
|+.++. ++..+ .|...|.+++|+|++++|++++. +.|++||++.............|...|++++|+|+++.|+++
T Consensus 89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 168 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASA 168 (345)
T ss_dssp EECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEE
T ss_pred EccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEE
Confidence 998764 45555 58899999999999999999995 459999998775433223455688999999999999977777
Q ss_pred EeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCC
Q 036953 242 AEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSN 321 (792)
Q Consensus 242 ~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~ 321 (792)
+.+..+ .+|....+...... .+.+|...|++++|+|+|++|+
T Consensus 169 s~d~~i-----------------------~~w~~~~~~~~~~~----~~~~h~~~v~~l~~sp~g~~l~----------- 210 (345)
T 3fm0_A 169 SYDDTV-----------------------KLYREEEDDWVCCA----TLEGHESTVWSLAFDPSGQRLA----------- 210 (345)
T ss_dssp ETTSCE-----------------------EEEEEETTEEEEEE----EECCCSSCEEEEEECTTSSEEE-----------
T ss_pred eCCCcE-----------------------EEEEecCCCEEEEE----EecCCCCceEEEEECCCCCEEE-----------
Confidence 655433 33443333322211 2456999999999999999999
Q ss_pred ccccccccccccCCCCCccccccccccccC
Q 036953 322 MQIEPSASLHLQSDSNVEQDGTVPSMETFP 351 (792)
Q Consensus 322 v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~ 351 (792)
+++.|++|.-|+...
T Consensus 211 ---------------s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 211 ---------------SCSDDRTVRIWRQYL 225 (345)
T ss_dssp ---------------EEETTSCEEEEEEEC
T ss_pred ---------------EEeCCCeEEEecccc
Confidence 899999999998643
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-24 Score=230.44 Aligned_cols=272 Identities=15% Similarity=0.165 Sum_probs=204.6
Q ss_pred CCCCCCCceEeeecccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC--------
Q 036953 18 SNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-------- 89 (792)
Q Consensus 18 ~~s~~s~~r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-------- 89 (792)
+-.+.++++++|....+++.+.....+....|+.+. ++... +....++++..++.|++|+....
T Consensus 4 ~~~~~sk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~ 75 (402)
T 2aq5_A 4 QVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGF--CAVNP------KFMALICEASGGGAFLVLPLGKTGRVDKNVP 75 (402)
T ss_dssp ----CCTTTTCEEEECCGGGSEESCCBCCCCCSSCS--EEECS------SEEEEEBCCSSSCCEEEEETTCCEECCTTCC
T ss_pred cccCCCCCccccCcCCChhhcEecceeecCccCCCc--EEECC------CeEEEEEEEcCCCEEEEEECccCCCCCCCCc
Confidence 445789999999999988888777777777776552 22221 11123344577899999997432
Q ss_pred CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-------cEEEEecCCCCCcEEEEEccCCC-CEEEEEeCCC
Q 036953 90 PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG-------NCLKVLSGHRRTPWVVRFHPLRS-EILASGSLDH 160 (792)
Q Consensus 90 ~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg-------k~v~~L~gH~~~VtsVafSP~dg-~lLaSgS~Dg 160 (792)
.+.+|...|++++|+| ++++|++|+.||+|+|||+.++ +.+..+.+|...|.+++|+| ++ ++|++++.|+
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg 154 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDN 154 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTS
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCC
Confidence 3678999999999999 9999999999999999999987 66888999999999999999 65 7999999999
Q ss_pred eEEEEECCCCcEEEEe---ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEE-ecCCCC-eEEEEEccC
Q 036953 161 EVRLWDANTSECIGSC---DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIV-LKTRRS-LRAVHFHPH 234 (792)
Q Consensus 161 tVrLWDl~tg~~v~t~---~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~-~~h~~s-VtsVafSPd 234 (792)
+|++||+++++++..+ .|...|.+++|+|++++|++++ ++.|++||+++++... .. ..|... +..+.|+|+
T Consensus 155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 231 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA---EKDRPHEGTRPVHAVFVSE 231 (402)
T ss_dssp CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECSSCSSSCCEEEECST
T ss_pred EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee---eeccCCCCCcceEEEEcCC
Confidence 9999999999999888 3888999999999999999998 5569999999877432 33 355554 899999999
Q ss_pred CCeEEEEE---eeCccccCCCceeeecCCCcccCCCCceEEEEecCCCE-EEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 235 AAPFVLTA---EVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDH-VSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 235 G~~LlaS~---s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~-~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
++.++++. .+. .+.+|+...+.. ..... + .+...|..++|+|||++++
T Consensus 232 ~~~l~~g~~~~~d~-----------------------~i~iwd~~~~~~~~~~~~----~-~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 232 GKILTTGFSRMSER-----------------------QVALWDTKHLEEPLSLQE----L-DTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp TEEEEEEECTTCCE-----------------------EEEEEETTBCSSCSEEEE----C-CCCSSCEEEEEETTTTEEE
T ss_pred CcEEEEeccCCCCc-----------------------eEEEEcCccccCCceEEe----c-cCCCceeEEEEcCCCCEEE
Confidence 88555542 222 233344333222 11111 1 2566788999999999886
Q ss_pred EccccccCCCCccccccccccccCCCCCccccccccccccCCCC
Q 036953 311 QHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIP 354 (792)
Q Consensus 311 ~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p 354 (792)
.+++.|.+|.-|+...++|
T Consensus 284 -------------------------~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 284 -------------------------LCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp -------------------------EEETTCSCEEEEEECSSTT
T ss_pred -------------------------EEEcCCCeEEEEEecCCCc
Confidence 1456688888888877765
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-23 Score=218.42 Aligned_cols=249 Identities=13% Similarity=0.085 Sum_probs=190.0
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcCC--CC
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSPD--GR 108 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSPD--G~ 108 (792)
+..+...+.+++|++++++++++ ..|+.|++|+.... .+.+|...|.+++|+++ ++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~----------------~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 70 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATC----------------SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT 70 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEE----------------ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred ecCCcccEEEEEEcCCCCEEEEE----------------ECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCC
Confidence 33566788999999987755444 56777778877522 46789999999999986 99
Q ss_pred EEEEEECCCeEEEEECCCCc--EEEEecCCCCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCCcE---EEEeccCCC
Q 036953 109 TLASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHPLR--SEILASGSLDHEVRLWDANTSEC---IGSCDFYRP 181 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~tgk--~v~~L~gH~~~VtsVafSP~d--g~lLaSgS~DgtVrLWDl~tg~~---v~t~~h~s~ 181 (792)
+|++++.|+.|++||+.+++ .+..+.+|...|.+++|+| + +++|++++.|++|++||++++.. .....+...
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 149 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 149 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence 99999999999999999987 7788889999999999999 7 89999999999999999998732 223368899
Q ss_pred eeEEEEcC-------------CCcEEEEEc-CCeEEEEECCCCCcccCC-eEEecCCCCeEEEEEccC---CCeEEEEEe
Q 036953 182 IASIAFHA-------------EGELLAVAS-GHKLYIWPYNNKEEASSP-IIVLKTRRSLRAVHFHPH---AAPFVLTAE 243 (792)
Q Consensus 182 V~sVafSp-------------dG~~LasgS-dd~V~IWDlrt~~~~~~~-~~~~~h~~sVtsVafSPd---G~~LlaS~s 243 (792)
|.+++|+| ++++|++++ ++.|++||++........ .....|...|++++|+|+ ++.+++++.
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence 99999999 689999998 455999999876643212 234558899999999999 676666654
Q ss_pred eCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcc
Q 036953 244 VNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQ 323 (792)
Q Consensus 244 ~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~ 323 (792)
+..+ .+|....+...... .......|...|++++|+|||++|+
T Consensus 230 dg~i-----------------------~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~------------- 272 (379)
T 3jrp_A 230 DRTC-----------------------IIWTQDNEQGPWKK-TLLKEEKFPDVLWRASWSLSGNVLA------------- 272 (379)
T ss_dssp TSCE-----------------------EEEEESSTTSCCEE-EESSSSCCSSCEEEEEECSSSCCEE-------------
T ss_pred CCEE-----------------------EEEeCCCCCcccee-eeeccccCCCcEEEEEEcCCCCEEE-------------
Confidence 4433 33443333210000 0111234888999999999999998
Q ss_pred ccccccccccCCCCCccccccccccccCC
Q 036953 324 IEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 324 ~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+++.|++|.-|+...+
T Consensus 273 -------------~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 273 -------------LSGGDNKVTLWKENLE 288 (379)
T ss_dssp -------------EEESSSSEEEEEEEET
T ss_pred -------------EecCCCcEEEEeCCCC
Confidence 6677888888886643
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=220.55 Aligned_cols=259 Identities=14% Similarity=0.152 Sum_probs=202.4
Q ss_pred CCCceEeeecccceeeC----CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCC
Q 036953 22 RRRARNVSRLLAHREIS----PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVP 93 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels----~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~g 93 (792)
..+.+.+|+....+... .+...+..++|++++.++ +++..++.|++|+..++ .+.+
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l----------------~~~~~dg~i~iwd~~~~~~~~~~~~ 174 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFL----------------SVGLGNGLVDIYDVESQTKLRTMAG 174 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEE----------------EEEETTSCEEEEETTTCCEEEEECC
T ss_pred CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEE----------------EEECCCCeEEEEECcCCeEEEEecC
Confidence 34567778776554332 234567777887776544 44566788888888755 3568
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ-TGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~-tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
|...|.+++| +++.|++++.|+.|++||+. .+..+..+.+|.+.|.+++|+| ++++|++++.|++|++||++++++
T Consensus 175 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~ 251 (401)
T 4aez_A 175 HQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIP 251 (401)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSE
T ss_pred CCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCc
Confidence 9999999999 56899999999999999998 5667888999999999999999 999999999999999999999998
Q ss_pred EEEe-ccCCCeeEEEEcCCC-cEEEEEc---CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 173 IGSC-DFYRPIASIAFHAEG-ELLAVAS---GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 173 v~t~-~h~s~V~sVafSpdG-~~LasgS---dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
+..+ .+...|.+++|+|++ .++++++ ++.|++||+++++.. ....+...|++++|+|+++.++++++..
T Consensus 252 ~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~g~~-- 325 (401)
T 4aez_A 252 KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVDAGSQVTSLIWSPHSKEIMSTHGFP-- 325 (401)
T ss_dssp EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEECSSCEEEEEECSSSSEEEEEECTT--
T ss_pred cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEeCCCcEEEEEECCCCCeEEEEeecC--
Confidence 8887 588999999999977 5666664 566999999987643 3445778899999999999888766321
Q ss_pred ccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccccc
Q 036953 248 DSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPS 327 (792)
Q Consensus 248 rs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s 327 (792)
...+.+|...++....... +.+|...|.++.|+|||++|+
T Consensus 326 -------------------dg~i~v~~~~~~~~~~~~~----~~~h~~~v~~~~~s~dg~~l~----------------- 365 (401)
T 4aez_A 326 -------------------DNNLSIWSYSSSGLTKQVD----IPAHDTRVLYSALSPDGRILS----------------- 365 (401)
T ss_dssp -------------------TCEEEEEEEETTEEEEEEE----EECCSSCCCEEEECTTSSEEE-----------------
T ss_pred -------------------CCcEEEEecCCccceeEEE----ecCCCCCEEEEEECCCCCEEE-----------------
Confidence 1235555555544433322 345889999999999999999
Q ss_pred ccccccCCCCCccccccccccccCCCC
Q 036953 328 ASLHLQSDSNVEQDGTVPSMETFPVIP 354 (792)
Q Consensus 328 ~~~q~~~~~sgs~D~tv~p~~~~~~~p 354 (792)
+++.|.+|.-|++..++.
T Consensus 366 ---------s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 366 ---------TAASDENLKFWRVYDGDH 383 (401)
T ss_dssp ---------EECTTSEEEEEECCC---
T ss_pred ---------EEeCCCcEEEEECCCCcc
Confidence 788999999999988754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=225.59 Aligned_cols=194 Identities=12% Similarity=0.146 Sum_probs=147.2
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcCCCCEEEEE
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSPDGRTLAST 113 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSPDG~~LaSG 113 (792)
....+.+++|+|++++++++ ..|+.|++|+...+ .+.+|...|.+++|+|++++|+++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~----------------~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 73 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTT----------------TATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTC 73 (377)
T ss_dssp CSSCCSCCEECSSSSEEECC----------------CSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEe----------------cCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEE
Confidence 34578899999998877666 34556666665543 467899999999999999999999
Q ss_pred ECCCeEEEEECCCCc---EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---EEEe-c-cCCCeeEE
Q 036953 114 HGDHTVKIIDCQTGN---CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC---IGSC-D-FYRPIASI 185 (792)
Q Consensus 114 S~DGtVrIWDl~tgk---~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~---v~t~-~-h~s~V~sV 185 (792)
+.|++|+|||+.+++ ....+.+|...|++++|+| ++++|++++.|++|++||+++++. ...+ . |...|.++
T Consensus 74 s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 74 SQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp ETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred eCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 999999999999877 6778889999999999999 999999999999999999998763 4555 3 88999999
Q ss_pred EEcCCCcEEEEEcC-CeEEEEECCCCCcc--------------cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 186 AFHAEGELLAVASG-HKLYIWPYNNKEEA--------------SSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 186 afSpdG~~LasgSd-d~V~IWDlrt~~~~--------------~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
+|+|++++|++++. +.|++||++..+.. ........|...|++++|+|++++|++++.+..++.|
T Consensus 153 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 232 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIA 232 (377)
T ss_dssp EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 99999999999984 55999999643211 0011222788899999999999988887765555444
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-23 Score=223.20 Aligned_cols=265 Identities=15% Similarity=0.147 Sum_probs=190.4
Q ss_pred CCceEeeecccceeeCCC-C-ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCC
Q 036953 23 RRARNVSRLLAHREISPK-T-KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPR 96 (792)
Q Consensus 23 s~~r~V~~l~~~rels~~-t-k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~ 96 (792)
.+...+|+....+..... . .......|+++++ .++++..++.|++|+...+ .+.+|..
T Consensus 77 d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 140 (420)
T 3vl1_A 77 DGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMR----------------RFILGTTEGDIKVLDSNFNLQREIDQAHVS 140 (420)
T ss_dssp TTEEEEEECCSEETTTTSCSCCEEEEEEECSSSC----------------EEEEEETTSCEEEECTTSCEEEEETTSSSS
T ss_pred CCcEEEEEecccceeeEEecCCceEEEEEecCCC----------------EEEEEECCCCEEEEeCCCcceeeecccccC
Confidence 456778877655443321 1 1222223444443 4566678899999998765 3468999
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
.|.+++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||+++++++..+
T Consensus 141 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 219 (420)
T 3vl1_A 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTF 219 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEe
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999999988887
Q ss_pred c----cCCC---------------------eeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEE
Q 036953 177 D----FYRP---------------------IASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVH 230 (792)
Q Consensus 177 ~----h~s~---------------------V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVa 230 (792)
. +... +.+++|+|++++|++++. +.|++||+++.+... .....|...|++++
T Consensus 220 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~v~~~~ 297 (420)
T 3vl1_A 220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI--QLPSKFTCSCNSLT 297 (420)
T ss_dssp CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE--EECCTTSSCEEEEE
T ss_pred ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE--EcccccCCCceeEE
Confidence 4 3334 444556789999999984 459999998877432 22234778999999
Q ss_pred EccCCC-eEEEEEe-----eCccccCCC-ceeeecCCC----cccCCCCceEEEEecCCCEEEEee-c------------
Q 036953 231 FHPHAA-PFVLTAE-----VNDLDSSDS-SMTRATSPG----YLRYPPPAVFVANAQSGDHVSLAA-E------------ 286 (792)
Q Consensus 231 fSPdG~-~LlaS~s-----~~dLrs~d~-~~~l~t~sg----~~~~p~~~~~l~~~ssG~~~~l~s-~------------ 286 (792)
|+|+++ .+++++. .|+++.... ...+....+ ...++ +...++.+..+..+.++. .
T Consensus 298 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~ 376 (420)
T 3vl1_A 298 VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDIISDPESERPAIEFE 376 (420)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence 999999 6665555 444444333 222322111 12223 233444444444555444 1
Q ss_pred -cCcccCCCceEEEeEECCCCc
Q 036953 287 -LPLMSSLPFLIVPSVSIDDSR 307 (792)
Q Consensus 287 -l~~l~gh~~~VwdV~~SpDGr 307 (792)
...+..|...|.+++|+|||+
T Consensus 377 ~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 377 TPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp SCEEECCSSCCCCEEEEECCSS
T ss_pred CccEEccCCcceEEEEEccCCC
Confidence 113456788899999999999
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=246.41 Aligned_cols=287 Identities=8% Similarity=-0.021 Sum_probs=200.6
Q ss_pred CCCCceEeeeccccee-------eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----
Q 036953 21 LRRRARNVSRLLAHRE-------ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---- 89 (792)
Q Consensus 21 ~~s~~r~V~~l~~~re-------ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---- 89 (792)
...+.+++|+....+. +..+...+..++|+|++.. ......|++++.|++|++|+....
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~----------~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHA----------PHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCC----------SSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCC----------CCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 3556788998765432 2233456888999987420 012356788899999999998643
Q ss_pred -----------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-EEEEecCCCCCcEEE--EEccCCC-CEEE
Q 036953 90 -----------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN-CLKVLSGHRRTPWVV--RFHPLRS-EILA 154 (792)
Q Consensus 90 -----------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk-~v~~L~gH~~~VtsV--afSP~dg-~lLa 154 (792)
.+.+|...|++++|+++ ..|++|+.||+|++||+.+++ +...+.+|...|+++ .|+| ++ ++|+
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~la 327 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVS 327 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEE
Confidence 34678999999999986 489999999999999998764 456788999999999 4677 66 8999
Q ss_pred EEeCCCeEEEEECCCCcEEEEec-cC--CCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEE
Q 036953 155 SGSLDHEVRLWDANTSECIGSCD-FY--RPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVH 230 (792)
Q Consensus 155 SgS~DgtVrLWDl~tg~~v~t~~-h~--s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVa 230 (792)
|++.|++|+|||+++++++..+. +. ..+.+++|+|+++.|+++++ +.|++||+++.... ..+.+|...|++|+
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~---~~l~gH~~~V~sva 404 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV---HPLVSRETTITAIG 404 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC---EEEEECSSCEEEEE
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc---eeeecCCCceEEEE
Confidence 99999999999999887665552 33 35789999999999998884 55999999987653 34667999999999
Q ss_pred EccCCCeEEEEEeeCccccCCCceee-ecCCC-----------cccCCCCceEEEEecCCCEEE----EeeccCcccCCC
Q 036953 231 FHPHAAPFVLTAEVNDLDSSDSSMTR-ATSPG-----------YLRYPPPAVFVANAQSGDHVS----LAAELPLMSSLP 294 (792)
Q Consensus 231 fSPdG~~LlaS~s~~dLrs~d~~~~l-~t~sg-----------~~~~p~~~~~l~~~ssG~~~~----l~s~l~~l~gh~ 294 (792)
|+|+++.|++++.+..++.|+....+ ....+ .+.+.+....+.. .++-.+. -...+..+.+|.
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~~~~~~~~~~g~~~~~l~gh~ 483 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSSYEVYPLTVNDVSKAKIDAHG 483 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE-CCCCCCCC-------------CC
T ss_pred eCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc-cCCceecccccCCcceeeecCCC
Confidence 99999988888777778776643211 11000 1112221111111 0100000 011234566799
Q ss_pred ceEEEeEECCCCc---EEEEccccccCCCCccccccccccccCCCCCccccccccccc
Q 036953 295 FLIVPSVSIDDSR---IDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 295 ~~VwdV~~SpDGr---~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
..|++|+|+|+|. +++ +|+.|.+|.-|+.
T Consensus 484 ~~V~~Vafsp~~~~~~~lA--------------------------sg~~~g~vrlw~l 515 (524)
T 2j04_B 484 INITCTKWNETSAGGKCYA--------------------------FSNSAGLLTLEYL 515 (524)
T ss_dssp CSCCCEEECCSTTTTTEEE--------------------------EECTTSEEEEEEC
T ss_pred ceEEEEECCCCCCccHHHH--------------------------hhccCceEEEEEc
Confidence 9999999999964 888 7788888888873
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=227.36 Aligned_cols=230 Identities=16% Similarity=0.202 Sum_probs=185.3
Q ss_pred CCCCceEeeecccceee---CCCCceeeeEEeeCCCceEeecCCCceee-------------------------------
Q 036953 21 LRRRARNVSRLLAHREI---SPKTKYVPKRQWVDASKLKTCGPSDSSVR------------------------------- 66 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rel---s~~tk~V~s~aWspd~~lla~G~~a~sv~------------------------------- 66 (792)
...+.+++|+....+.. ..+...+..++|+|+++++++|..+..+.
T Consensus 85 s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~ 164 (380)
T 3iz6_a 85 SQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164 (380)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB
T ss_pred eCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEE
Confidence 35678999998665443 35666789999999999988876443321
Q ss_pred ---cCCcEEEEEeCCCeEEEEeccCCCc---------CCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC-CCcEEEE
Q 036953 67 ---DAKRGLVSWVEAESLRHLSAKYCPL---------VPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQ-TGNCLKV 132 (792)
Q Consensus 67 ---d~~~~L~S~s~d~sIrvWd~~t~~L---------~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~-tgk~v~~ 132 (792)
+.+..+++++.|++|++||..+++. .+|...|.+++|++ +++.|++|+.|++|++||+. .++.+..
T Consensus 165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~ 244 (380)
T 3iz6_a 165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT 244 (380)
T ss_dssp CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 1234689999999999999986631 57999999999987 89999999999999999997 4577889
Q ss_pred ecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC--------CCeeEEEEcCCCcEEEEEcC-CeEE
Q 036953 133 LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY--------RPIASIAFHAEGELLAVASG-HKLY 203 (792)
Q Consensus 133 L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~--------s~V~sVafSpdG~~LasgSd-d~V~ 203 (792)
+.+|.+.|++++|+| ++++|++++.|++|++||+++++++..+... ..+.+++|+|+|++|++++. +.|+
T Consensus 245 ~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 323 (380)
T 3iz6_a 245 YHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY 323 (380)
T ss_dssp ECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEE
T ss_pred ECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEE
Confidence 999999999999999 9999999999999999999999988877421 24899999999999999984 4599
Q ss_pred EEECCCCCcccCCe-EEecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 204 IWPYNNKEEASSPI-IVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 204 IWDlrt~~~~~~~~-~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
+||+...+...... ....|...|++++|+|+|+.|++++.+..++.|+
T Consensus 324 vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 324 VWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp EEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred EEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 99998876432110 1145889999999999999777766666555543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-23 Score=216.91 Aligned_cols=271 Identities=12% Similarity=0.069 Sum_probs=196.1
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcCCCCEEEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSPDG~~LaS 112 (792)
.+...+.+++|++++++++++ ..++.|++|+...+ .+.+|...|.+++|+|++++|++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~----------------~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 69 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAIC----------------PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEE----------------CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEE----------------eCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEE
Confidence 355678999999998766554 45666777766544 24589999999999999999999
Q ss_pred EECCCeEEEEECCCCcEEEE--ecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---EEEe--ccCCCeeEE
Q 036953 113 THGDHTVKIIDCQTGNCLKV--LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC---IGSC--DFYRPIASI 185 (792)
Q Consensus 113 GS~DGtVrIWDl~tgk~v~~--L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~---v~t~--~h~s~V~sV 185 (792)
++.|+.|++||+.+++.... +..|...|.+++|+| ++++|++++.|+.|++||++.++. ...+ .|...|.++
T Consensus 70 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 148 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL 148 (372)
T ss_dssp EETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred EcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEE
Confidence 99999999999988875444 467999999999999 899999999999999999998763 2333 478899999
Q ss_pred EEcCCCcEEEEEc-CCeEEEEECCCCC---------------cccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc-
Q 036953 186 AFHAEGELLAVAS-GHKLYIWPYNNKE---------------EASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD- 248 (792)
Q Consensus 186 afSpdG~~LasgS-dd~V~IWDlrt~~---------------~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr- 248 (792)
+|+|++++|++++ ++.|++||++... ..........|...|++++|+|+++.+++++.+..++
T Consensus 149 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 228 (372)
T 1k8k_C 149 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 228 (372)
T ss_dssp EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred EEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEE
Confidence 9999999999998 5559999975221 0011123346788999999999999888777644444
Q ss_pred ----cCCCceeeecCCC---cccCCCCceEEEEecCCCEEEEeec-----------------------------------
Q 036953 249 ----SSDSSMTRATSPG---YLRYPPPAVFVANAQSGDHVSLAAE----------------------------------- 286 (792)
Q Consensus 249 ----s~d~~~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s~----------------------------------- 286 (792)
.......+..... ...|.+....++.+.++..+.+...
T Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 229 ADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp EEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred EECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 3333333333222 2233334444555443333222221
Q ss_pred ----------cCcccCCCceEEEeE-ECCCC---cEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 287 ----------LPLMSSLPFLIVPSV-SIDDS---RIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 287 ----------l~~l~gh~~~VwdV~-~SpDG---r~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
.....+|...|.+++ ++++| ++|+ +++.|++|.-|+.-.+
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~--------------------------s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC--------------------------TTGMDGGMSIWDVRSL 362 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEEESTTTSCSEEE--------------------------EEETTSEEEEEEHHHH
T ss_pred cccccCccccccccccccCCcceeEEecCCCcceeeEE--------------------------EecCCCceEEEEecCh
Confidence 122347999999997 45777 8888 8999999999997654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=227.63 Aligned_cols=246 Identities=14% Similarity=0.095 Sum_probs=182.5
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-------------CcCCCCCCeEEEEEcCC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-------------PLVPPPRSTIAAAFSPD 106 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-------------~L~gH~~~V~sLafSPD 106 (792)
....+.++.|+.+ .+.+|. .+....++++..++.+|+|+.... ....+...+.+++||||
T Consensus 72 ~~~~v~s~~~~~~--~~~~g~-----~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 72 NDDSPTAIDASKG--IILVGC-----NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp TSCCCCEEEEETT--EEEEEC-----CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred CCCceEEEEeCCC--EEEEEE-----CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 3344556655544 333332 133445666667777888876432 22345667999999999
Q ss_pred CCEEEEEE--CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---ccCCC
Q 036953 107 GRTLASTH--GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC---DFYRP 181 (792)
Q Consensus 107 G~~LaSGS--~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~---~h~s~ 181 (792)
|+++++++ .|++|+|||+.+++++..+. |.+.|.+++|+| +++++++++.| .+++|+..+++.+... .+...
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~ 221 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWS 221 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCC
Confidence 99987654 68999999999999998886 788899999999 99999999855 5677777777665443 46778
Q ss_pred eeEEEEcCCCcEEEEEc-CC----eEEEEECCCCCcccC-CeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCcee
Q 036953 182 IASIAFHAEGELLAVAS-GH----KLYIWPYNNKEEASS-PIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMT 255 (792)
Q Consensus 182 V~sVafSpdG~~LasgS-dd----~V~IWDlrt~~~~~~-~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~ 255 (792)
|.+++|+|+++++++++ ++ .+++||+........ ......|...|++++|+|+|++|++++.+.
T Consensus 222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~---------- 291 (365)
T 4h5i_A 222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN---------- 291 (365)
T ss_dssp EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS----------
T ss_pred EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC----------
Confidence 99999999999999987 33 378888876653221 123456888999999999999777666544
Q ss_pred eecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCC
Q 036953 256 RATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSD 335 (792)
Q Consensus 256 l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~ 335 (792)
.+.+|+..++..+... ..+|...|++++|||||++|+
T Consensus 292 -------------~V~iwd~~~~~~~~~~-----~~gH~~~V~~v~fSpdg~~la------------------------- 328 (365)
T 4h5i_A 292 -------------SIALVKLKDLSMSKIF-----KQAHSFAITEVTISPDSTYVA------------------------- 328 (365)
T ss_dssp -------------CEEEEETTTTEEEEEE-----TTSSSSCEEEEEECTTSCEEE-------------------------
T ss_pred -------------EEEEEECCCCcEEEEe-----cCcccCCEEEEEECCCCCEEE-------------------------
Confidence 3555666665554322 346999999999999999999
Q ss_pred CCCccccccccccc
Q 036953 336 SNVEQDGTVPSMET 349 (792)
Q Consensus 336 ~sgs~D~tv~p~~~ 349 (792)
++|.|+||.-|++
T Consensus 329 -S~S~D~tvrvw~i 341 (365)
T 4h5i_A 329 -SVSAANTIHIIKL 341 (365)
T ss_dssp -EEETTSEEEEEEC
T ss_pred -EEeCCCeEEEEEc
Confidence 8999999999997
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-24 Score=226.88 Aligned_cols=277 Identities=16% Similarity=0.174 Sum_probs=204.5
Q ss_pred eeeeEEeeCCCc-eEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC------cCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 43 YVPKRQWVDASK-LKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP------LVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 43 ~V~s~aWspd~~-lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~------L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
.+.+++|+|+++ +++++.. .+..+++++.|+.|++|+..+.. ...|...|.+++|+|++++|++++.
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~------~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 87 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTV------SGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALD 87 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCB------SSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEES
T ss_pred hcceEeeCCCCCCEEEEEec------CcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEcc
Confidence 577889999986 6776632 22334445778899999987542 2468899999999999999999999
Q ss_pred CCeEEEEECCC----CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc------EEEEe----ccCCC
Q 036953 116 DHTVKIIDCQT----GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE------CIGSC----DFYRP 181 (792)
Q Consensus 116 DGtVrIWDl~t----gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~------~v~t~----~h~s~ 181 (792)
|+.|++||+.+ .+.+..+.+|...|++++|+|+++++|++++.|++|++||+++++ ....+ .|...
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 99999999987 458888999999999999999338999999999999999999876 33332 47889
Q ss_pred eeEEEEcCC-CcEEEEEcC-CeEEEEECCCCCcccCCeEEecC------CCCeEEEEEccCCCeEEEEEe-eC---cccc
Q 036953 182 IASIAFHAE-GELLAVASG-HKLYIWPYNNKEEASSPIIVLKT------RRSLRAVHFHPHAAPFVLTAE-VN---DLDS 249 (792)
Q Consensus 182 V~sVafSpd-G~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h------~~sVtsVafSPdG~~LlaS~s-~~---dLrs 249 (792)
|.+++|+|+ +.+|++++. +.|++||+++.+... ....+ ...|++++|+|++..+++++. +. .+..
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~ 244 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI---HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE---EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce---EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEE
Confidence 999999999 788999884 559999998876432 22223 788999999999865555544 43 5554
Q ss_pred CCCc------eeee-cCCC---cccCCC-CceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCC-cEEEEc
Q 036953 250 SDSS------MTRA-TSPG---YLRYPP-PAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDS-RIDLQH 312 (792)
Q Consensus 250 ~d~~------~~l~-t~sg---~~~~p~-~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDG-r~lv~~ 312 (792)
++.. ..+. .... ...|.+ ....++....+..+.++. ....+.+|...|++++|+|+| ++++
T Consensus 245 ~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~-- 322 (416)
T 2pm9_A 245 WDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA-- 322 (416)
T ss_dssp EETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEE--
T ss_pred EeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEE--
Confidence 4322 1111 1111 233433 344444444444555544 123455788999999999999 7888
Q ss_pred cccccCCCCccccccccccccCCCCCccccccccccccCCCC
Q 036953 313 ASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIP 354 (792)
Q Consensus 313 ~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p 354 (792)
+++.|++|.-|++..+.+
T Consensus 323 ------------------------s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 323 ------------------------CASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp ------------------------ECCSSSEEEEEESCCCCC
T ss_pred ------------------------EEecCCcEEEEEccCCCC
Confidence 788999999999877643
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-21 Score=220.74 Aligned_cols=263 Identities=11% Similarity=0.057 Sum_probs=196.7
Q ss_pred CCceEeeecccc-------eeeCCCCce-eeeEEeeC--CCceEeecCCCceeecC------------------------
Q 036953 23 RRARNVSRLLAH-------REISPKTKY-VPKRQWVD--ASKLKTCGPSDSSVRDA------------------------ 68 (792)
Q Consensus 23 s~~r~V~~l~~~-------rels~~tk~-V~s~aWsp--d~~lla~G~~a~sv~d~------------------------ 68 (792)
.+...+|+.... +.+..+... +.+++|+| ++++++++..+..+..+
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 117 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc
Confidence 456889987644 334456677 99999999 99887776544332111
Q ss_pred ----------CcEEEEEeCC----CeEEEEeccCC--CcCCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEE
Q 036953 69 ----------KRGLVSWVEA----ESLRHLSAKYC--PLVPPPRSTIAAAFSPDGR-TLASTHGDHTVKIIDCQTGNCLK 131 (792)
Q Consensus 69 ----------~~~L~S~s~d----~sIrvWd~~t~--~L~gH~~~V~sLafSPDG~-~LaSGS~DGtVrIWDl~tgk~v~ 131 (792)
+..++++..+ +.+++|+.... .+.+|...|.+++|+|+++ .|++++.|+.|++||+.+++.+.
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~ 197 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 197 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceee
Confidence 1123333333 46667763322 4678999999999999988 89999999999999999999999
Q ss_pred EecCCCC---CcEEEEEccCC-CCEEEEEeCCCeEEEEECCCCcEEEEe-----ccCCCeeEEEEcCCCcEEEEEc-CCe
Q 036953 132 VLSGHRR---TPWVVRFHPLR-SEILASGSLDHEVRLWDANTSECIGSC-----DFYRPIASIAFHAEGELLAVAS-GHK 201 (792)
Q Consensus 132 ~L~gH~~---~VtsVafSP~d-g~lLaSgS~DgtVrLWDl~tg~~v~t~-----~h~s~V~sVafSpdG~~LasgS-dd~ 201 (792)
.+.+|.. .|++++|+| + +++|++++.|+.|++||+++++.+..+ .|...|.+++|+ ++++|++++ ++.
T Consensus 198 ~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 198 SDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT 275 (615)
T ss_dssp EECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE
T ss_pred eecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCc
Confidence 9999999 999999999 7 999999999999999999999999998 788999999999 999999998 556
Q ss_pred EEEEECCCCCcccCCeEEecC----CCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecC
Q 036953 202 LYIWPYNNKEEASSPIIVLKT----RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQS 277 (792)
Q Consensus 202 V~IWDlrt~~~~~~~~~~~~h----~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ss 277 (792)
|++||+++.+... ....+ ...+.++.|. +++.+++++.+..+ .+|....
T Consensus 276 i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i-----------------------~~~d~~~ 328 (615)
T 1pgu_A 276 IRVWDVTTSKCVQ---KWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTL-----------------------NFYELGH 328 (615)
T ss_dssp EEEEETTTTEEEE---EEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCE-----------------------EEEETTE
T ss_pred EEEEECCCCcEEE---EEcCCCCcccCceeEEEeC-CCCeEEEEECCCCE-----------------------EEEECCC
Confidence 9999999876533 22222 3678888886 78877776654433 3333333
Q ss_pred CCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCcccccccccccc
Q 036953 278 GDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETF 350 (792)
Q Consensus 278 G~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~ 350 (792)
+.... .+.+|...|.++.+ |+ ++ +++.|++|.-|+..
T Consensus 329 ~~~~~------~~~~~~~~v~~~~~-~~---l~--------------------------~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 329 DEVLK------TISGHNKGITALTV-NP---LI--------------------------SGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEEE------EECCCSSCEEEEET-TT---TE--------------------------EEETTSCEEETTTT
T ss_pred CcEEE------EEeCCCCCEEEEEe-cC---cE--------------------------EECCCCeEEEEEch
Confidence 22221 23458888889999 87 55 46777777777765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=218.16 Aligned_cols=245 Identities=16% Similarity=0.154 Sum_probs=192.1
Q ss_pred CCCCceEeeeccccee-------eCCCCceeeeEEeeC-CCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---
Q 036953 21 LRRRARNVSRLLAHRE-------ISPKTKYVPKRQWVD-ASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC--- 89 (792)
Q Consensus 21 ~~s~~r~V~~l~~~re-------ls~~tk~V~s~aWsp-d~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~--- 89 (792)
...+.+.||+...... +..+...+..++|+| ++. .+++++.|+.|++|+...+
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~----------------~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN----------------VIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT----------------EEEEEETTSEEEEEECCTTCCS
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC----------------EEEEEeCCCeEEEEEccCCCCc
Confidence 4567889998754322 234566788899988 554 4455678899999998754
Q ss_pred --------CcCCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEe--cCCCCCcEEEEEccCCCCEEEEEeC
Q 036953 90 --------PLVPPPRSTIAAAFSPDG-RTLASTHGDHTVKIIDCQTGNCLKVL--SGHRRTPWVVRFHPLRSEILASGSL 158 (792)
Q Consensus 90 --------~L~gH~~~V~sLafSPDG-~~LaSGS~DGtVrIWDl~tgk~v~~L--~gH~~~VtsVafSP~dg~lLaSgS~ 158 (792)
.+.+|...|.+++|+|++ ++|++++.|+.|+|||+.+++.+..+ .+|...|.+++|+| ++++|++++.
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 196 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCR 196 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEET
T ss_pred cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEec
Confidence 246899999999999998 69999999999999999999999999 88999999999999 9999999999
Q ss_pred CCeEEEEECCCCcEEEEe--ccCCC-eeEEEEcCCCcEEEEE---c-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEE
Q 036953 159 DHEVRLWDANTSECIGSC--DFYRP-IASIAFHAEGELLAVA---S-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHF 231 (792)
Q Consensus 159 DgtVrLWDl~tg~~v~t~--~h~s~-V~sVafSpdG~~Lasg---S-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVaf 231 (792)
|++|++||+++++.+..+ .|... +.++.|+|++++|+++ + ++.|++||+++.+... ......+...+.+++|
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL-SLQELDTSSGVLLPFF 275 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS-EEEECCCCSSCEEEEE
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc-eEEeccCCCceeEEEE
Confidence 999999999999998887 35554 8999999999999998 4 4559999998876532 2233457788999999
Q ss_pred ccCCCeEEEEEe-eCccccCCCceeeecCCCcccCCCCceEEEEecCCCE-EEEeeccCcccCCCceEEEeEECCCCcEE
Q 036953 232 HPHAAPFVLTAE-VNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDH-VSLAAELPLMSSLPFLIVPSVSIDDSRID 309 (792)
Q Consensus 232 SPdG~~LlaS~s-~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~-~~l~s~l~~l~gh~~~VwdV~~SpDGr~l 309 (792)
+|+++.++++++ +. .+.+|...++.. ...... +. |...|.+++|+|+|+++
T Consensus 276 s~~~~~l~~~g~~dg-----------------------~i~i~d~~~~~~~~~~l~~---~~-~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDS-----------------------SIRYFEITSEAPFLHYLSM---FS-SKESQRGMGYMPKRGLE 328 (402)
T ss_dssp ETTTTEEEEEETTCS-----------------------CEEEEEECSSTTCEEEEEE---EC-CSSCCSEEEECCGGGSC
T ss_pred cCCCCEEEEEEcCCC-----------------------eEEEEEecCCCcceEeecc---cc-cCCcccceEEecccccc
Confidence 999998877774 33 244444444441 222211 22 56788999999999987
Q ss_pred E
Q 036953 310 L 310 (792)
Q Consensus 310 v 310 (792)
+
T Consensus 329 ~ 329 (402)
T 2aq5_A 329 V 329 (402)
T ss_dssp G
T ss_pred e
Confidence 6
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-22 Score=210.37 Aligned_cols=201 Identities=18% Similarity=0.252 Sum_probs=165.7
Q ss_pred CCCCceEeeecccc--------eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---
Q 036953 21 LRRRARNVSRLLAH--------REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC--- 89 (792)
Q Consensus 21 ~~s~~r~V~~l~~~--------rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~--- 89 (792)
...+.+++|+.... +.+..+...+..+.|+++++ .+++++.|++|++||..++
T Consensus 37 s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~----------------~l~s~s~D~~v~~wd~~~~~~~ 100 (319)
T 3frx_A 37 SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA----------------YALSASWDKTLRLWDVATGETY 100 (319)
T ss_dssp ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTTTEEE
T ss_pred cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC----------------EEEEEeCCCEEEEEECCCCCee
Confidence 35567889976432 23445666777777777765 4566688999999999876
Q ss_pred -CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC-----CCCEEEEEeCCCeEE
Q 036953 90 -PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL-----RSEILASGSLDHEVR 163 (792)
Q Consensus 90 -~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~-----dg~lLaSgS~DgtVr 163 (792)
.+.+|...|.+++|+|++++|++|+.|++|++||+. ++++..+.+|...|.+++|+|. ++.++++++.|++|+
T Consensus 101 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 179 (319)
T 3frx_A 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179 (319)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEE
T ss_pred EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEE
Confidence 467899999999999999999999999999999986 5678889999999999999982 234899999999999
Q ss_pred EEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 164 LWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 164 LWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
+||+++.+....+ .|...|.+++|+|++++|++++ |+.|++||+++.+.. ....+...|.+++|+|++..++++
T Consensus 180 ~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~v~~~~~sp~~~~la~~ 255 (319)
T 3frx_A 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM----YTLSAQDEVFSLAFSPNRYWLAAA 255 (319)
T ss_dssp EEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE----EEEECCSCEEEEEECSSSSEEEEE
T ss_pred EEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE----EEecCCCcEEEEEEcCCCCEEEEE
Confidence 9999999888777 5899999999999999999998 556999999887643 234456789999999999866654
Q ss_pred E
Q 036953 242 A 242 (792)
Q Consensus 242 ~ 242 (792)
.
T Consensus 256 ~ 256 (319)
T 3frx_A 256 T 256 (319)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-22 Score=210.00 Aligned_cols=275 Identities=13% Similarity=0.118 Sum_probs=200.0
Q ss_pred eCCCCceeeeEEeeC-CCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc-----------------CCCCCCe
Q 036953 37 ISPKTKYVPKRQWVD-ASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL-----------------VPPPRST 98 (792)
Q Consensus 37 ls~~tk~V~s~aWsp-d~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L-----------------~gH~~~V 98 (792)
+..+...+.+++|+| ++.++ +++..|+.|++|+...... .+|...|
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l----------------~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYM----------------LSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEE----------------EEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred eeccCCcEEEEEEecCCCCEE----------------EEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence 345777899999999 76644 4456788888888875421 3599999
Q ss_pred EEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC--CCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 99 IAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL--RSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 99 ~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~--dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
.+++|+| ++++|++++.|+.|++||+.+++.+..+. +...+.++.|++. ++.++++++.|+.|++||+++++.+..
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence 9999999 88899999999999999999999888887 7888999999983 334999999999999999999988888
Q ss_pred ec-cCCCeeEEEEcCCCc-EEEEEc-CCeEEEEECCCCCccc-------------CCeEEecCCCCeEEEEEccCCCeEE
Q 036953 176 CD-FYRPIASIAFHAEGE-LLAVAS-GHKLYIWPYNNKEEAS-------------SPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 176 ~~-h~s~V~sVafSpdG~-~LasgS-dd~V~IWDlrt~~~~~-------------~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
+. |...|.+++|+|+++ +|++++ ++.|++||++...... .......|...|++++|+|++++++
T Consensus 182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 75 889999999999998 577887 4559999998765211 0001135788999999999999888
Q ss_pred EEEeeCccccCCCc-----eeeecCC--------Cccc-CCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEe
Q 036953 240 LTAEVNDLDSSDSS-----MTRATSP--------GYLR-YPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPS 300 (792)
Q Consensus 240 aS~s~~dLrs~d~~-----~~l~t~s--------g~~~-~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV 300 (792)
+++.+..+..|+.. ....... .... .......++. ..+..+.++. ....+.+|...|.++
T Consensus 262 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~ 340 (408)
T 4a11_B 262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV-PYGSTIAVYTVYSGEQITMLKGHYKTVDCC 340 (408)
T ss_dssp EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE-EETTEEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEE-ecCCEEEEEECcCCcceeeeccCCCeEEEE
Confidence 87775555444322 1111000 0000 1111122222 2233333333 123456799999999
Q ss_pred EECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 301 VSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 301 ~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
+|+|+|++|+ +++.|++|.-|+...+++.
T Consensus 341 ~~s~~~~~l~--------------------------s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 341 VFQSNFQELY--------------------------SGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp EEETTTTEEE--------------------------EEETTSCEEEEEECC----
T ss_pred EEcCCCCEEE--------------------------EECCCCeEEEEeCCCCCcc
Confidence 9999999999 8999999999998888654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-22 Score=208.85 Aligned_cols=158 Identities=23% Similarity=0.362 Sum_probs=140.1
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
.+.+|.+.|++++|+|++++|++++.|+.|+|||+.+++....+.+|...|.+++|+| ++++|++++.|++|++||+++
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~ 96 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSS 96 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCC
Confidence 3568999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 170 SECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 170 g~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
++++..+ .|...|.+++|+|++++|++++ ++.|++||+++.+... ....|...|.+++|+|+++.+++++.+..+
T Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 173 (312)
T 4ery_A 97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173 (312)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE---EecCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence 9998887 4888999999999999999998 4559999998876432 455688899999999999988777765544
Q ss_pred ccCC
Q 036953 248 DSSD 251 (792)
Q Consensus 248 rs~d 251 (792)
+.++
T Consensus 174 ~~wd 177 (312)
T 4ery_A 174 RIWD 177 (312)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=215.33 Aligned_cols=264 Identities=12% Similarity=0.134 Sum_probs=192.7
Q ss_pred ceeeeEEeeCCCc-eEeecCCCceeecCCcEEEEEeCCCeEEEEec----cCCC--------------c------CCCCC
Q 036953 42 KYVPKRQWVDASK-LKTCGPSDSSVRDAKRGLVSWVEAESLRHLSA----KYCP--------------L------VPPPR 96 (792)
Q Consensus 42 k~V~s~aWspd~~-lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~----~t~~--------------L------~gH~~ 96 (792)
..+.+++|+|++. +++++ ..++.+++|+. ..+. + .+|..
T Consensus 46 ~~v~~~~~s~~~~~~l~~~----------------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYG----------------EKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTN 109 (425)
T ss_dssp SCCSEEEECSSCTTEEEEE----------------ETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CB
T ss_pred CceEEEEECCCCCcEEEEe----------------cCCceEEEEEEecccCCccccccccccccccccccccccccCCCC
Confidence 5678889998877 66555 33444444444 2221 1 23678
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
.|.+++|+|++++|++++.|+.|++|| .+++.+..+.+|...|.+++|+| ++++|++++.|+.|++||+++++.+..+
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHF 187 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEe
Confidence 999999999999999999999999999 67888999999999999999999 9999999999999999999999988887
Q ss_pred c-cCCC---------------eeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 177 D-FYRP---------------IASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 177 ~-h~s~---------------V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
. +... +.+++|++++.+++.+.++.|++||+++.+.. .....|...|++++|+|+++.+++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPT---GKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp CCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCS---EEECCCSSCEEEEEEETTTTEEEE
T ss_pred eccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCcee---eeeccCCCceEEEEECCCCCEEEE
Confidence 5 3333 89999999877555555677999999987643 345578899999999999998887
Q ss_pred EEeeCccccCCC-----ceeeecCCC---cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCc
Q 036953 241 TAEVNDLDSSDS-----SMTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSR 307 (792)
Q Consensus 241 S~s~~dLrs~d~-----~~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr 307 (792)
++.+..+..++. ...+..... ...+.+.. .++....+..+.++. ....+..|...|.++.|+|+|+
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 343 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQ 343 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSS
T ss_pred EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCC
Confidence 776555554442 233322222 22333333 444444444555544 1234456889999999999999
Q ss_pred EEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 308 IDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 308 ~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
+|+ +++.|.+|.-|+...+.
T Consensus 344 ~l~--------------------------~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 344 KYA--------------------------VAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEE--------------------------EEETTSCEEEEECHHHH
T ss_pred EEE--------------------------EEECCCeEEEEECCCCc
Confidence 999 67788888888876553
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=215.29 Aligned_cols=261 Identities=12% Similarity=0.047 Sum_probs=196.2
Q ss_pred CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECCC
Q 036953 41 TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGDH 117 (792)
Q Consensus 41 tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~DG 117 (792)
...+.+++|++++++++ ++..++.|++|+.... .+.+|...|.+++|+|++++|++++.|+
T Consensus 108 ~~~v~~~~~s~~~~~l~----------------~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIV----------------TGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVEN 171 (425)
T ss_dssp CBCEEEEEECTTSSEEE----------------EEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred CCceEEEEEcCCCCEEE----------------EEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCC
Confidence 44788888888876544 4456777888874322 4568999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEecCCCCC---------------cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCC
Q 036953 118 TVKIIDCQTGNCLKVLSGHRRT---------------PWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRP 181 (792)
Q Consensus 118 tVrIWDl~tgk~v~~L~gH~~~---------------VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~ 181 (792)
.|++||+.+++.+..+..+... +.+++|++ + ..+++++.|+.|++||+++++.+..+ .+...
T Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 249 (425)
T 1r5m_A 172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP 249 (425)
T ss_dssp CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSC
T ss_pred eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCc
Confidence 9999999999999999888777 99999998 5 56899999999999999998887777 58899
Q ss_pred eeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC-----cee
Q 036953 182 IASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS-----SMT 255 (792)
Q Consensus 182 V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~-----~~~ 255 (792)
|.+++|+|++++|++++ ++.|++||+++.+.. .....|...|.+++|+|++ .+++++.+..+..++. ...
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~ 325 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ---NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL 325 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEECSSSBSCS---EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCccc---eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe
Confidence 99999999999999998 455999999887643 3455688999999999999 6666666554444432 222
Q ss_pred eecCCC---cccCCCCceEEEEecCCCEEEEee----c---------------------cCcccCCCc--eEEEeEECCC
Q 036953 256 RATSPG---YLRYPPPAVFVANAQSGDHVSLAA----E---------------------LPLMSSLPF--LIVPSVSIDD 305 (792)
Q Consensus 256 l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s----~---------------------l~~l~gh~~--~VwdV~~SpD 305 (792)
+..... ...+.+....++.+..+..+.++. . ...+.+|.. .|.++.|+|+
T Consensus 326 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 405 (425)
T 1r5m_A 326 SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA 405 (425)
T ss_dssp EECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred cccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence 332222 233444444455555444444443 1 234566766 9999999999
Q ss_pred CcEEEEccccccCCCCccccccccccccCCCCCccccccccccc
Q 036953 306 SRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 306 Gr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
|++|+ +++.|++|.-|+.
T Consensus 406 ~~~l~--------------------------~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 406 GNKIS--------------------------VAYSLQEGSVVAI 423 (425)
T ss_dssp SSEEE--------------------------EEESSSCCEEEEC
T ss_pred CceEE--------------------------EEecCceEEEEee
Confidence 99998 6777788877764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.9e-23 Score=212.83 Aligned_cols=281 Identities=12% Similarity=0.062 Sum_probs=198.3
Q ss_pred CCceEeeecccceeeC----CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC-----cCC
Q 036953 23 RRARNVSRLLAHREIS----PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP-----LVP 93 (792)
Q Consensus 23 s~~r~V~~l~~~rels----~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~-----L~g 93 (792)
.+...+|+....+... .+...+.++.|+++.. .+..++++..++.|++|+..... +.+
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 109 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSL-------------QQRYLATGDFGGNLHIWNLEAPEMPVYSVKG 109 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCT-------------TTCCEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCC-------------CCceEEEecCCCeEEEEeCCCCCccEEEEEe
Confidence 6778899877654322 2344667777777620 13456677889999999987553 568
Q ss_pred CCCCeEEEEE------cCCCCEEEEEECCCeEEEEECCCCc-EEEEecCCCC----CcEEEE----EccCCCCEEEEEeC
Q 036953 94 PPRSTIAAAF------SPDGRTLASTHGDHTVKIIDCQTGN-CLKVLSGHRR----TPWVVR----FHPLRSEILASGSL 158 (792)
Q Consensus 94 H~~~V~sLaf------SPDG~~LaSGS~DGtVrIWDl~tgk-~v~~L~gH~~----~VtsVa----fSP~dg~lLaSgS~ 158 (792)
|...|.+++| +|++++|++++.|+.|++||+.+++ .+..+..|.+ .|.+++ |+| +++++++++.
T Consensus 110 ~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~ 188 (357)
T 3i2n_A 110 HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYD 188 (357)
T ss_dssp CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEET
T ss_pred cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEcc
Confidence 9999999954 6899999999999999999999887 6778876655 899998 677 8999999999
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEcC---CCcEEEEEc-CCeEEEEECCCCCcccCCe--EEecCCCCeEEEEEc
Q 036953 159 DHEVRLWDANTSECIGSCDFYRPIASIAFHA---EGELLAVAS-GHKLYIWPYNNKEEASSPI--IVLKTRRSLRAVHFH 232 (792)
Q Consensus 159 DgtVrLWDl~tg~~v~t~~h~s~V~sVafSp---dG~~LasgS-dd~V~IWDlrt~~~~~~~~--~~~~h~~sVtsVafS 232 (792)
|+.|++||+++++......+...+.+++|+| ++++|++++ ++.|++||+++.+...... ....|...|++++|+
T Consensus 189 d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 268 (357)
T 3i2n_A 189 NGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL 268 (357)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE
T ss_pred CCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC
Confidence 9999999999999888888999999999999 899999988 5669999998776543111 223688999999999
Q ss_pred cCCCe-EEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEE
Q 036953 233 PHAAP-FVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQ 311 (792)
Q Consensus 233 PdG~~-LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~ 311 (792)
|+++. +++++.+..++.|+...... ........... ...+....+ ..+.+|...|++++|+|+|++++
T Consensus 269 ~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~g~~~--~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~- 337 (357)
T 3i2n_A 269 PQNRELFLTAGGAGGLHLWKYEYPIQ----RSKKDSEGIEM--GVAGSVSLL----QNVTLSTQPISSLDWSPDKRGLC- 337 (357)
T ss_dssp TTEEEEEEEEETTSEEEEEEEECCSC----C--CCTTSCCC--CCCCEEEEE----EEEECCSSCEEEEEECSSSTTEE-
T ss_pred CCCCcEEEEEeCCCcEEEeecCCCcc----cccccCCCCcc--cccccccee----eccccCCCCeeEEEEcCCCCeEE-
Confidence 99994 55554444444333221000 00000000000 001111111 12455899999999999999876
Q ss_pred ccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 312 HASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 312 ~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
.+++.|++|.-|++...
T Consensus 338 ------------------------~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 338 ------------------------VCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp ------------------------EEEETTSEEEEEEECC-
T ss_pred ------------------------EEecCCCcEEEEECCCc
Confidence 14778888888886543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=217.20 Aligned_cols=269 Identities=9% Similarity=0.045 Sum_probs=200.6
Q ss_pred eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----------cCCCCCCeEEEEEc
Q 036953 35 REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----------LVPPPRSTIAAAFS 104 (792)
Q Consensus 35 rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----------L~gH~~~V~sLafS 104 (792)
+.+..+...+.+++|++ + .+++++.|+.|++|+..... +.+|...|.+++|+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~----------------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 71 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--S----------------FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 71 (397)
T ss_dssp EESSCSSSCEEEEEECS--S----------------EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--C----------------eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEe
Confidence 44556777888998876 2 45666788999999987654 46899999999999
Q ss_pred CC----C---CEEEEEECCCeEEEEECCCCcE-----EEEecCC-----CCCcEEEEEc----cCCCCE-EEEEeCCCeE
Q 036953 105 PD----G---RTLASTHGDHTVKIIDCQTGNC-----LKVLSGH-----RRTPWVVRFH----PLRSEI-LASGSLDHEV 162 (792)
Q Consensus 105 PD----G---~~LaSGS~DGtVrIWDl~tgk~-----v~~L~gH-----~~~VtsVafS----P~dg~l-LaSgS~DgtV 162 (792)
|+ + ++|++++.|+.|++||+.+++. +..+..| ...|.+++|+ | ++++ |++++.|+.|
T Consensus 72 ~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i 150 (397)
T 1sq9_A 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTT 150 (397)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCE
T ss_pred cccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcE
Confidence 99 9 9999999999999999998887 8888888 5999999999 9 8888 9999999999
Q ss_pred EEEECCC------CcEEE-----Ee--------ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEec-
Q 036953 163 RLWDANT------SECIG-----SC--------DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLK- 221 (792)
Q Consensus 163 rLWDl~t------g~~v~-----t~--------~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~- 221 (792)
++||+++ ++.+. .+ .+...+.+++|+|++ +|++++ ++.|++||+++.+... ....
T Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~ 226 (397)
T 1sq9_A 151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY---NFESQ 226 (397)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE---EEECC
T ss_pred EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeE---EEecc
Confidence 9999988 55544 44 267889999999999 999988 4559999998876432 3444
Q ss_pred --C---CCCeEEEEEccCCCeEEEEEee---CccccCCC-----ceeeec-------------CCC---cccCCCCceEE
Q 036953 222 --T---RRSLRAVHFHPHAAPFVLTAEV---NDLDSSDS-----SMTRAT-------------SPG---YLRYPPPAVFV 272 (792)
Q Consensus 222 --h---~~sVtsVafSPdG~~LlaS~s~---~dLrs~d~-----~~~l~t-------------~sg---~~~~p~~~~~l 272 (792)
| ...|++++|+|+++.|++++.+ ..+..++. ...+.. ..+ ...|.+....+
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 306 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 306 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence 6 8899999999999988887766 55554442 223332 122 23344444444
Q ss_pred EEecCCCEEEEee-----ccCccc------CC---------------CceEEEeEECCCC----------cEEEEccccc
Q 036953 273 ANAQSGDHVSLAA-----ELPLMS------SL---------------PFLIVPSVSIDDS----------RIDLQHASRR 316 (792)
Q Consensus 273 ~~~ssG~~~~l~s-----~l~~l~------gh---------------~~~VwdV~~SpDG----------r~lv~~~~~~ 316 (792)
+.+..+..+.++. ....+. +| ...|.+++|+|+| ++|+
T Consensus 307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~------ 380 (397)
T 1sq9_A 307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC------ 380 (397)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE------
T ss_pred EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE------
Confidence 4444444444443 112233 45 8999999999999 6777
Q ss_pred cCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 317 ASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 317 ~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+++.|++|.-|+.-.|
T Consensus 381 --------------------s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 381 --------------------CVCLDRSIRWFREAGG 396 (397)
T ss_dssp --------------------EEETTTEEEEEEEEC-
T ss_pred --------------------EecCCCcEEEEEcCCC
Confidence 7888999999987654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-22 Score=209.37 Aligned_cols=210 Identities=20% Similarity=0.226 Sum_probs=164.4
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--CcEEEEecCCCCCcEEEEEcc-CCCCEEEEEeCCCeEEEEEC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT--GNCLKVLSGHRRTPWVVRFHP-LRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t--gk~v~~L~gH~~~VtsVafSP-~dg~lLaSgS~DgtVrLWDl 167 (792)
+.+|.+.|.+++|+|+|++|++|+.|++|+|||+.. .+.+..+.+|.+.|++++|++ .++++|++|+.|++|++||+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 568999999999999999999999999999999974 367889999999999999986 24789999999999999999
Q ss_pred CCCc--EEEEe-ccCCCeeEEEEcCC--CcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC------
Q 036953 168 NTSE--CIGSC-DFYRPIASIAFHAE--GELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA------ 235 (792)
Q Consensus 168 ~tg~--~v~t~-~h~s~V~sVafSpd--G~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG------ 235 (792)
++++ .+..+ .|...|.+++|+|+ +++|++++ ++.|++||++...... ......|...|++++|+|++
T Consensus 85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-CEEEECCSSCEEEEEECCCC------
T ss_pred CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-eeeeecccCccceEeecCCccccccc
Confidence 9874 34444 48889999999998 88999988 5569999998764322 34566789999999999974
Q ss_pred -------CeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC--
Q 036953 236 -------APFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS-- 306 (792)
Q Consensus 236 -------~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG-- 306 (792)
+.|++++.+.. +.+|+...+..... ....+.+|...|.+++|+|+|
T Consensus 164 ~~~~~~~~~l~sgs~D~~-----------------------v~lwd~~~~~~~~~--~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNL-----------------------VKIWKYNSDAQTYV--LESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp ------CCEEEEEETTSC-----------------------EEEEEEETTTTEEE--EEEEECCCSSCEEEEEECCCCSS
T ss_pred CCCCCCcceEEEEcCCCc-----------------------EEEEEEcCCCceEE--EEEEecCCCCceEEEEECCCCCC
Confidence 44444443332 34444443331100 011355699999999999995
Q ss_pred -cEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 307 -RIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 307 -r~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
++|+ +++.|++|.-|+...+
T Consensus 219 ~~~la--------------------------s~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 219 RSYMA--------------------------SVSQDRTCIIWTQDNE 239 (297)
T ss_dssp SEEEE--------------------------EEETTSCEEEEEESST
T ss_pred ceEEE--------------------------EEECCCcEEEEEeCCC
Confidence 7888 8999999999997553
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-23 Score=221.78 Aligned_cols=228 Identities=13% Similarity=0.137 Sum_probs=171.4
Q ss_pred cCCcEEEEEeC------CCeEEEEeccCCC--------cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE--
Q 036953 67 DAKRGLVSWVE------AESLRHLSAKYCP--------LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL-- 130 (792)
Q Consensus 67 d~~~~L~S~s~------d~sIrvWd~~t~~--------L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v-- 130 (792)
..+..|++++. |+.+++|+...+. ..+|...|.+++|+|+++ +++++.||+|+|||+.+++..
T Consensus 52 pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~ 130 (357)
T 4g56_B 52 RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLV 130 (357)
T ss_dssp SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CC
T ss_pred CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEE
Confidence 34567888876 6778999875441 246889999999999875 567889999999999887654
Q ss_pred --EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCc-EEEEEc-CCeEEEE
Q 036953 131 --KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGE-LLAVAS-GHKLYIW 205 (792)
Q Consensus 131 --~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~-~LasgS-dd~V~IW 205 (792)
....+|...|++++|+| ++++|++++.|++|++||+++++++..+. |...|.+++|++++. +|++++ ++.|++|
T Consensus 131 ~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~w 209 (357)
T 4g56_B 131 NKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209 (357)
T ss_dssp CCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEEC
T ss_pred EeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEE
Confidence 23458999999999999 99999999999999999999999998885 889999999999885 677777 5569999
Q ss_pred ECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-eCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEe
Q 036953 206 PYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLA 284 (792)
Q Consensus 206 Dlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~ 284 (792)
|+++++... ......+...+++++|+|++..+++++. +.. +.+|+..++....
T Consensus 210 d~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-----------------------i~~wd~~~~~~~~-- 263 (357)
T 4g56_B 210 DTRKPKPAT-RIDFCASDTIPTSVTWHPEKDDTFACGDETGN-----------------------VSLVNIKNPDSAQ-- 263 (357)
T ss_dssp CTTSSSCBC-BCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-----------------------EEEEESSCGGGCE--
T ss_pred ECCCCceee-eeeeccccccccchhhhhcccceEEEeecccc-----------------------eeEEECCCCcEeE--
Confidence 999887543 2223346778999999999776666654 332 3444444433322
Q ss_pred eccCcccCCCceEEEeEECCCC-cEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 285 AELPLMSSLPFLIVPSVSIDDS-RIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 285 s~l~~l~gh~~~VwdV~~SpDG-r~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
.+.+|...|.+++|+|+| ++|+ +++.|++|.-||.-.+
T Consensus 264 ----~~~~~~~~v~~l~~sp~~~~~la--------------------------sgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 264 ----TSAVHSQNITGLAYSYHSSPFLA--------------------------SISEDCTVAVLDADFS 302 (357)
T ss_dssp ----EECCCSSCEEEEEECSSSSCCEE--------------------------EEETTSCEEEECTTSC
T ss_pred ----EEeccceeEEEEEEcCCCCCEEE--------------------------EEeCCCEEEEEECCCC
Confidence 234588899999999998 5777 7899999999997655
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=239.95 Aligned_cols=251 Identities=11% Similarity=0.061 Sum_probs=181.6
Q ss_pred CceeeeEEeeCCC---------ceEeecCCCce---eecCCcEEEEEeCCCeEEEEeccCCC--------cCCCCCCeEE
Q 036953 41 TKYVPKRQWVDAS---------KLKTCGPSDSS---VRDAKRGLVSWVEAESLRHLSAKYCP--------LVPPPRSTIA 100 (792)
Q Consensus 41 tk~V~s~aWspd~---------~lla~G~~a~s---v~d~~~~L~S~s~d~sIrvWd~~t~~--------L~gH~~~V~s 100 (792)
...+.+++|+|++ .+++++..... .......+.+++.|++|++|+..+++ +..|.+.|.+
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~ 212 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD 212 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEE
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEE
Confidence 3467889999986 67777642211 00112346778899999999987654 3467788999
Q ss_pred EEEcCC------CCEEEEEECCCeEEEEECCCCcE-----------EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEE
Q 036953 101 AAFSPD------GRTLASTHGDHTVKIIDCQTGNC-----------LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVR 163 (792)
Q Consensus 101 LafSPD------G~~LaSGS~DGtVrIWDl~tgk~-----------v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVr 163 (792)
++|+|+ +.+|++++.||+|+|||+.+++. ...+.+|...|++++|++ + ..|++|+.|++|+
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~ 290 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFVA 290 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEEE
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEEE
Confidence 999996 57999999999999999986642 246789999999999998 4 5899999999999
Q ss_pred EEECCCCc-EEEEe-ccCCCeeEE--EEcCCC-cEEEEEc-CCeEEEEECCCCCcccCCeEEecCC--CCeEEEEEccCC
Q 036953 164 LWDANTSE-CIGSC-DFYRPIASI--AFHAEG-ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTR--RSLRAVHFHPHA 235 (792)
Q Consensus 164 LWDl~tg~-~v~t~-~h~s~V~sV--afSpdG-~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~--~sVtsVafSPdG 235 (792)
+||+++++ +...+ .|...|.++ .|++++ ++|++++ |+.|+|||+++.+... ....|. ..|.+++|+|++
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~---~~~~~~~~~~v~~v~fsp~~ 367 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK---TTVSRFRGSNLVPVVYCPQI 367 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC---EEEEECSCCSCCCEEEETTT
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc---ccccccccCcccceEeCCCc
Confidence 99999763 43444 588999999 578888 8999998 5569999998876543 223332 358899999999
Q ss_pred CeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEcccc
Q 036953 236 APFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASR 315 (792)
Q Consensus 236 ~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~ 315 (792)
+.+++++.+.. +.+|+...+.+... +.+|...|++++|+|+|++|+
T Consensus 368 ~~l~s~~~d~t-----------------------v~lwd~~~~~~~~~------l~gH~~~V~sva~Sp~g~~l~----- 413 (524)
T 2j04_B 368 YSYIYSDGASS-----------------------LRAVPSRAAFAVHP------LVSRETTITAIGVSRLHPMVL----- 413 (524)
T ss_dssp TEEEEECSSSE-----------------------EEEEETTCTTCCEE------EEECSSCEEEEECCSSCCBCE-----
T ss_pred CeEEEeCCCCc-----------------------EEEEECccccccee------eecCCCceEEEEeCCCCCeEE-----
Confidence 97666554432 34444444443222 234999999999999999999
Q ss_pred ccCCCCccccccccccccCCCCCccccccccccccC
Q 036953 316 RASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFP 351 (792)
Q Consensus 316 ~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~ 351 (792)
+|+.|++|.-|+...
T Consensus 414 ---------------------Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 414 ---------------------AGSADGSLIITNAAR 428 (524)
T ss_dssp ---------------------EEETTTEEECCBSCS
T ss_pred ---------------------EEECCCEEEEEechH
Confidence 899999999999644
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-22 Score=207.49 Aligned_cols=230 Identities=14% Similarity=0.176 Sum_probs=171.4
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC-C-----CcCCCCCCeEEEEEcCCCCEE
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY-C-----PLVPPPRSTIAAAFSPDGRTL 110 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t-~-----~L~gH~~~V~sLafSPDG~~L 110 (792)
+..+...+.+++|+|+.. .+..++++..|+.|++|+..+ + .+.+|...|.+++|+|++++|
T Consensus 35 ~~~h~~~v~~~~~~~~~~-------------~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTL-------------PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101 (368)
T ss_dssp SSCCSSCEEEEEECCTTS-------------SSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred ccCCCCceEEEEEcCCCC-------------CceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEE
Confidence 345667899999998830 122455567788888888875 2 356799999999999999999
Q ss_pred EEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE--ccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCC--------
Q 036953 111 ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF--HPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-------- 180 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf--SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s-------- 180 (792)
++++.|+.|++||+.+++.+. +.+|...|++++| ++ ++++|++++.|++|++||+++++++..+....
T Consensus 102 ~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 179 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI 179 (368)
T ss_dssp EEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE
T ss_pred EEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec
Confidence 999999999999999988766 4569999999999 88 88899999999999999999887665554322
Q ss_pred ----------------------------------CeeEEEEcCCCcE----EEEEc-CCeEEEEECCCCCcccCCeEEec
Q 036953 181 ----------------------------------PIASIAFHAEGEL----LAVAS-GHKLYIWPYNNKEEASSPIIVLK 221 (792)
Q Consensus 181 ----------------------------------~V~sVafSpdG~~----LasgS-dd~V~IWDlrt~~~~~~~~~~~~ 221 (792)
.+..+.+.++... +++++ ++.|++||++.............
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 2334444443332 67776 55699999987753221233344
Q ss_pred CCC------------CeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCc
Q 036953 222 TRR------------SLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPL 289 (792)
Q Consensus 222 h~~------------sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~ 289 (792)
|.. .|++++|+|++++|++++.+.. +.+|+..++..+..
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-----------------------i~iwd~~~~~~~~~------ 310 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-----------------------FSFWDKDARTKLKT------ 310 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-----------------------EEEEETTTTEEEEE------
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCe-----------------------EEEEECCCCcEEEE------
Confidence 433 7999999999998877775543 44555555444332
Q ss_pred ccCCCceEEEeEECCCCcEEE
Q 036953 290 MSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 290 l~gh~~~VwdV~~SpDGr~lv 310 (792)
+.+|...|.+++|+|||++|+
T Consensus 311 ~~~~~~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 311 SEQLDQPISACCFNHNGNIFA 331 (368)
T ss_dssp CCCCSSCEEEEEECTTSSCEE
T ss_pred ecCCCCCceEEEECCCCCeEE
Confidence 335889999999999999999
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=215.02 Aligned_cols=203 Identities=16% Similarity=0.099 Sum_probs=162.3
Q ss_pred CCcCCCCCCeEEEEE-----cC-CCCEEEEEECCCeEEEEECCCC-------cEEEEecCCCCCcEEEEEccCCCCEEEE
Q 036953 89 CPLVPPPRSTIAAAF-----SP-DGRTLASTHGDHTVKIIDCQTG-------NCLKVLSGHRRTPWVVRFHPLRSEILAS 155 (792)
Q Consensus 89 ~~L~gH~~~V~sLaf-----SP-DG~~LaSGS~DGtVrIWDl~tg-------k~v~~L~gH~~~VtsVafSP~dg~lLaS 155 (792)
..+.+|.+.|++++| ++ ++++|++|+.|++|+|||+.+. .....+.+|...|.+++|+| ++.++++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s 93 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAIS 93 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEEE
Confidence 457799999999999 77 9999999999999999998743 45678899999999999999 9999999
Q ss_pred EeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEcc
Q 036953 156 GSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP 233 (792)
Q Consensus 156 gS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP 233 (792)
++.|++|++||+++++++..+ .|...|.+++|+|++++|++++ ++.|++||+....... ......|...|.+++|+|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~v~~~~~~~ 172 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS-SAEKENHSDWVSCVRYSP 172 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEE-CCTTTSCSSCEEEEEECC
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceee-eecccCCCceeeeeeecc
Confidence 999999999999999988887 5899999999999999999998 5559999997432111 011125778899999999
Q ss_pred CC----------CeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEEC
Q 036953 234 HA----------APFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSI 303 (792)
Q Consensus 234 dG----------~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~S 303 (792)
++ .++++++.+..+ .+|+ ..+.... .+.+|...|.+++|+
T Consensus 173 ~~~~~~~~~~~~~~l~s~~~d~~i-----------------------~iwd-~~~~~~~------~~~~h~~~v~~~~~s 222 (343)
T 2xzm_R 173 IMKSANKVQPFAPYFASVGWDGRL-----------------------KVWN-TNFQIRY------TFKAHESNVNHLSIS 222 (343)
T ss_dssp CCCSCSCCCSSCCEEEEEETTSEE-----------------------EEEE-TTTEEEE------EEECCSSCEEEEEEC
T ss_pred ccccccccCCCCCEEEEEcCCCEE-----------------------EEEc-CCCceeE------EEcCccccceEEEEC
Confidence 87 344444433333 3333 1111111 234588999999999
Q ss_pred CCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccc
Q 036953 304 DDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 304 pDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
|||++|+ +++.|++|.-||.
T Consensus 223 ~~g~~l~--------------------------sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 223 PNGKYIA--------------------------TGGKDKKLLIWDI 242 (343)
T ss_dssp TTSSEEE--------------------------EEETTCEEEEEES
T ss_pred CCCCEEE--------------------------EEcCCCeEEEEEC
Confidence 9999999 8999999999996
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-21 Score=202.09 Aligned_cols=227 Identities=17% Similarity=0.203 Sum_probs=185.7
Q ss_pred CCCceEeeecccc--------eeeCCCCceeeeEEeeCCCceEeecCCCceee--------------------------c
Q 036953 22 RRRARNVSRLLAH--------REISPKTKYVPKRQWVDASKLKTCGPSDSSVR--------------------------D 67 (792)
Q Consensus 22 ~s~~r~V~~l~~~--------rels~~tk~V~s~aWspd~~lla~G~~a~sv~--------------------------d 67 (792)
..+.+++|+.... +.+..+...+..+.|++++++++++..+..+. .
T Consensus 59 ~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (340)
T 4aow_A 59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138 (340)
T ss_dssp TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEee
Confidence 4567999987543 23445677899999999999887776554432 2
Q ss_pred CCcEEEEEeCCCeEEEEeccCC-----CcCCCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCcEEEEecCCCCCc
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC-----PLVPPPRSTIAAAFSPDG--RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP 140 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~-----~L~gH~~~V~sLafSPDG--~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V 140 (792)
.+..+++++.|+.+++|+.... .+.+|...+.+++|++++ ..+++++.|+.|++||+.+++.+..+.+|.+.|
T Consensus 139 ~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v 218 (340)
T 4aow_A 139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL 218 (340)
T ss_dssp TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcE
Confidence 2345788899999999998643 467899999999999854 578999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccC-----
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASS----- 215 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~----- 215 (792)
++++|+| ++++|++++.|++|++||+++.+++..+.+...+.++.|+|++.+++.+.++.|++||++.......
T Consensus 219 ~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 297 (340)
T 4aow_A 219 NTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 297 (340)
T ss_dssp EEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-
T ss_pred EEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccc
Confidence 9999999 9999999999999999999999999999988999999999999988888888899999987653220
Q ss_pred -CeEEecCCCCeEEEEEccCCCeEEEEEeeCcccc
Q 036953 216 -PIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDS 249 (792)
Q Consensus 216 -~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs 249 (792)
......|...|++++|+|++++|++++.+..|+.
T Consensus 298 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp ------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 1122357889999999999998887776554443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=234.81 Aligned_cols=245 Identities=13% Similarity=0.162 Sum_probs=198.6
Q ss_pred ceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCE
Q 036953 34 HREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRT 109 (792)
Q Consensus 34 ~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~ 109 (792)
++.+..+...+.+++|+|++.+++++ ..++.|++|+..++ .+.+|...|.+++|+|++++
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~----------------~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 69 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTT----------------LYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNW 69 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEE----------------ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTE
T ss_pred ceeeecCCCceEEEEECCCCCEEEEE----------------eCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCE
Confidence 44556677789999999998765544 56788899988765 45689999999999999999
Q ss_pred EEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-ccCCCeeEEEE
Q 036953 110 LASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSC-DFYRPIASIAF 187 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~-~h~s~V~sVaf 187 (792)
|++++.||.|+|||+.+++.+..+.+|.+.|++++|+| ++++|++++.|++|++||+.++ .....+ .|...|.+++|
T Consensus 70 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999 9999999999999999999987 555555 58899999999
Q ss_pred cC-CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEcc--CCCeEEEEEeeCccccCCCceeeecCCCcc
Q 036953 188 HA-EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP--HAAPFVLTAEVNDLDSSDSSMTRATSPGYL 263 (792)
Q Consensus 188 Sp-dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP--dG~~LlaS~s~~dLrs~d~~~~l~t~sg~~ 263 (792)
+| ++++|++++ ++.|++||++..+... .....+...+..++|+| ++..+++++.+.
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------------------ 208 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNF--TLTTGQERGVNYVDYYPLPDKPYMITASDDL------------------ 208 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSCSE--EEECCCTTCCCEEEECCSTTCCEEEEECTTS------------------
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCccee--EEecCCCCCEEEEEEEECCCCCEEEEEeCCC------------------
Confidence 99 888999988 5569999998776432 22233458899999999 888666655433
Q ss_pred cCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccc
Q 036953 264 RYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGT 343 (792)
Q Consensus 264 ~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~t 343 (792)
.+.+|+..++...... .+|...|..+.|+|+|++++ +++.|++
T Consensus 209 -----~i~~~d~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~--------------------------~~~~dg~ 251 (814)
T 3mkq_A 209 -----TIKIWDYQTKSCVATL------EGHMSNVSFAVFHPTLPIII--------------------------SGSEDGT 251 (814)
T ss_dssp -----EEEEEETTTTEEEEEE------ECCSSCEEEEEECSSSSEEE--------------------------EEETTSC
T ss_pred -----EEEEEECCCCcEEEEE------cCCCCCEEEEEEcCCCCEEE--------------------------EEeCCCe
Confidence 2444554444433322 34888999999999999999 7888999
Q ss_pred cccccccCC
Q 036953 344 VPSMETFPV 352 (792)
Q Consensus 344 v~p~~~~~~ 352 (792)
|.-|+...+
T Consensus 252 v~vwd~~~~ 260 (814)
T 3mkq_A 252 LKIWNSSTY 260 (814)
T ss_dssp EEEEETTTC
T ss_pred EEEEECCCC
Confidence 999987655
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-21 Score=211.79 Aligned_cols=180 Identities=22% Similarity=0.306 Sum_probs=148.4
Q ss_pred EEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 036953 71 GLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH 146 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafS 146 (792)
.+++++.|+.|++|+..++ .+.+|...|.+++|+|++++|++++.|++|++||+.++++...+. +...+.+++|+
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~ 215 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS 215 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE
Confidence 4566678899999998765 367899999999999999999999999999999999999888876 66789999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCccc---
Q 036953 147 PLRSEILASGSLDHEVRLWDANTSECIGSC--------DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEAS--- 214 (792)
Q Consensus 147 P~dg~lLaSgS~DgtVrLWDl~tg~~v~t~--------~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~--- 214 (792)
|.++++|++++.|++|++||+++++.+..+ .|...|.+++|+|++++|++++ |+.|++||++......
T Consensus 216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 295 (393)
T 1erj_A 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295 (393)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence 978899999999999999999999887765 4778999999999999999998 5569999997653211
Q ss_pred ------CCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 215 ------SPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 215 ------~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
.......|...|.+++|+|++.+|++++.+..+..|+
T Consensus 296 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd 338 (393)
T 1erj_A 296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338 (393)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 1123456889999999999999888777655555444
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=211.85 Aligned_cols=193 Identities=10% Similarity=0.151 Sum_probs=148.7
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---------------CcCCCC--------
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---------------PLVPPP-------- 95 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---------------~L~gH~-------- 95 (792)
.....+.+++|++++.++++| ..|+.|++|+.... .+.+|.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g----------------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 89 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATG----------------DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKS 89 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEE----------------ETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGT
T ss_pred cccCcEEEEEECCCCCEEEEE----------------cCCCeEEEEEecCCCCCCcccccceeEeccccccccccccccc
Confidence 345689999999998766554 56677777776532 345787
Q ss_pred ----CCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCcEE---------------------------------------
Q 036953 96 ----RSTIAAAFSPDG--RTLASTHGDHTVKIIDCQTGNCL--------------------------------------- 130 (792)
Q Consensus 96 ----~~V~sLafSPDG--~~LaSGS~DGtVrIWDl~tgk~v--------------------------------------- 130 (792)
..|.+++|+|++ ..|++++.|++|++||+.+++..
T Consensus 90 ~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
T 3dw8_B 90 LEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPR 169 (447)
T ss_dssp EEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEE
T ss_pred ccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccce
Confidence 889999999988 89999999999999998764432
Q ss_pred EE-ecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEe--------ccCCCeeEEEEcCCC-cEEEEEcC
Q 036953 131 KV-LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-SECIGSC--------DFYRPIASIAFHAEG-ELLAVASG 199 (792)
Q Consensus 131 ~~-L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~v~t~--------~h~s~V~sVafSpdG-~~LasgSd 199 (792)
.. +.+|...|++++|+| ++++|+++ .|++|++||+++ ++.+..+ .|...|.+++|+|++ ++|++++.
T Consensus 170 ~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 170 RIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp EEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred EEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence 12 368999999999999 89999998 799999999994 4555532 578899999999998 89999984
Q ss_pred -CeEEEEECCCCCcccC-CeEEecCCC------------CeEEEEEccCCCeEEEEEeeCccccC
Q 036953 200 -HKLYIWPYNNKEEASS-PIIVLKTRR------------SLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 200 -d~V~IWDlrt~~~~~~-~~~~~~h~~------------sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
+.|++||+++.+.... ......+.. .|++++|+|++++|++++. ..++.|
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iw 311 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVW 311 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEE
T ss_pred CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEE
Confidence 5599999998874221 123344444 8999999999998877665 444433
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.6e-22 Score=208.96 Aligned_cols=206 Identities=17% Similarity=0.257 Sum_probs=157.5
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--cEEEEe-cC-CCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG--NCLKVL-SG-HRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg--k~v~~L-~g-H~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
+.+|.+.|.+++|+++ +|++|+.|++|+|||+.++ +.+..+ .+ |...|++++|+| ++++|++++.|++|++||
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~ 86 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWA 86 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEE
Confidence 5689999999999987 9999999999999999875 455566 44 999999999999 899999999999999999
Q ss_pred CCC-------CcEEEEe-ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCc-ccCCeEEecCCCCeEEEEEccCCC
Q 036953 167 ANT-------SECIGSC-DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEE-ASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 167 l~t-------g~~v~t~-~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~-~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
+.. .+++..+ .|...|.+++|+|++++|++++. +.|++||++.... .........|...|++++|+|++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 166 (330)
T 2hes_X 87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA 166 (330)
T ss_dssp C-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS
T ss_pred cccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC
Confidence 953 3455555 58899999999999999999994 5599999954322 111234556889999999999999
Q ss_pred eEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCC--CcEEEEccc
Q 036953 237 PFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDD--SRIDLQHAS 314 (792)
Q Consensus 237 ~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpD--Gr~lv~~~~ 314 (792)
.|++++.+..++. |....+.... ...+.+|...|++++|+|+ +..|+
T Consensus 167 ~l~s~s~D~~i~i-----------------------W~~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~---- 215 (330)
T 2hes_X 167 LLASSSYDDTVRI-----------------------WKDYDDDWEC----VAVLNGHEGTVWSSDFDKTEGVFRLC---- 215 (330)
T ss_dssp EEEEEETTSCEEE-----------------------EEEETTEEEE----EEEECCCSSCEEEEEECCSSSSCEEE----
T ss_pred EEEEEcCCCeEEE-----------------------EECCCCCeeE----EEEccCCCCcEEEEEecCCCCeeEEE----
Confidence 7776665554443 3333321111 1234569999999999999 77888
Q ss_pred cccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 315 RRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 315 ~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+++.|++|.-|+...+
T Consensus 216 ----------------------s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 216 ----------------------SGSDDSTVRVWKYMGD 231 (330)
T ss_dssp ----------------------EEETTSCEEEEEEEEE
T ss_pred ----------------------EEeCCCeEEEEEecCC
Confidence 7899999999996543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-22 Score=212.47 Aligned_cols=228 Identities=11% Similarity=0.058 Sum_probs=173.5
Q ss_pred CcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
+..++++..++.+++|+..+.. +..| ..+....|++++++|++|+.|+.|+|||+.+++....+.+|...|++++
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 146 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLK 146 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEE
T ss_pred CCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEE
Confidence 3456777789999999987653 2334 4455557899999999999999999999999999888899999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h 222 (792)
|+| ++++|++++.|++|++||+++++.+..+. |...|.+++|+|++++|++++. +.|++||+++++..........+
T Consensus 147 ~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 225 (420)
T 3vl1_A 147 FFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 225 (420)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBT
T ss_pred ECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCC
Confidence 999 89999999999999999999998888774 8899999999999999999984 55999999988754311111124
Q ss_pred CCCeEEEEEc---------------------cCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEE
Q 036953 223 RRSLRAVHFH---------------------PHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHV 281 (792)
Q Consensus 223 ~~sVtsVafS---------------------PdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~ 281 (792)
...|.+++|. |+++.+++++.+. .+.+|+...+...
T Consensus 226 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 226 HDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG-----------------------VITVHNVFSKEQT 282 (420)
T ss_dssp TCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-----------------------CEEEEETTTCCEE
T ss_pred CCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC-----------------------eEEEEECCCCcee
Confidence 5566666664 4554444433222 2333443333332
Q ss_pred EEeeccCcccCCCceEEEeEECCCCc-EEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 282 SLAAELPLMSSLPFLIVPSVSIDDSR-IDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 282 ~l~s~l~~l~gh~~~VwdV~~SpDGr-~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
... ...|...|++++|+|+|+ +++ +++.|.+|.-||.-.+
T Consensus 283 ~~~-----~~~~~~~v~~~~~~~~~~~~l~--------------------------~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 283 IQL-----PSKFTCSCNSLTVDGNNANYIY--------------------------AGYENGMLAQWDLRSP 323 (420)
T ss_dssp EEE-----CCTTSSCEEEEEECSSCTTEEE--------------------------EEETTSEEEEEETTCT
T ss_pred EEc-----ccccCCCceeEEEeCCCCCEEE--------------------------EEeCCCeEEEEEcCCC
Confidence 221 234788999999999999 888 7889999999997655
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-21 Score=240.03 Aligned_cols=210 Identities=16% Similarity=0.224 Sum_probs=172.2
Q ss_pred CCCceEeeecccceee---CCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cCCC
Q 036953 22 RRRARNVSRLLAHREI---SPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVPP 94 (792)
Q Consensus 22 ~s~~r~V~~l~~~rel---s~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH 94 (792)
..+.+.+|+....+.+ ..+...+.+++|+|+++++ ++++.|+.|++|+..+++ +.+|
T Consensus 635 ~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l----------------~s~~~d~~v~vwd~~~~~~~~~~~~~ 698 (1249)
T 3sfz_A 635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI----------------ATCSADKKVKIWDSATGKLVHTYDEH 698 (1249)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE----------------EEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEE----------------EEEeCCCeEEEEECCCCceEEEEcCC
Confidence 5567889988765443 3566788888998886644 455678899999988763 5689
Q ss_pred CCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 95 PRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 95 ~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
...|.+++|+| ++..+++|+.|+.|++||+.+++++..+.+|.+.|++++|+| +++++++++.|++|++||+++++.
T Consensus 699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEE
T ss_pred CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcc
Confidence 99999999999 566899999999999999999999999999999999999999 999999999999999999987654
Q ss_pred EEEe--------------------------------------------------------ccCCCeeEEEEcCCCcEEEE
Q 036953 173 IGSC--------------------------------------------------------DFYRPIASIAFHAEGELLAV 196 (792)
Q Consensus 173 v~t~--------------------------------------------------------~h~s~V~sVafSpdG~~Las 196 (792)
...+ .+...+.+++|+|+++++++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 857 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE
Confidence 4332 34567888999999999988
Q ss_pred EcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 197 ASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 197 gSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
++. +.|++||+.++... .....|...|++++|+|+++.+++++.+..++.|+
T Consensus 858 ~~~dg~v~vwd~~~~~~~---~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 858 ALSQYCVELWNIDSRLKV---ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp ECSSSCEEEEETTTTEEE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EeCCCeEEEEEcCCCcee---eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 884 44999999877643 34567889999999999999888887766666554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=203.98 Aligned_cols=248 Identities=10% Similarity=0.079 Sum_probs=181.0
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC-------cCCCCCCeEEEEEcCCCC-EE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP-------LVPPPRSTIAAAFSPDGR-TL 110 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~-------L~gH~~~V~sLafSPDG~-~L 110 (792)
.+...+.+++|+|++.++++ +..|+.|++|+..... +.+|...|.+++|+|+++ +|
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~----------------~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLI----------------TSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEE----------------EETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEE
T ss_pred CCCCcEEEEEEcCCCCEEEE----------------EcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEE
Confidence 56678999999998765444 4566777777765432 347899999999999999 99
Q ss_pred EEEECCCeEEEEEC-CCCcEEEEecC--CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC---------CcEEEEecc
Q 036953 111 ASTHGDHTVKIIDC-QTGNCLKVLSG--HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT---------SECIGSCDF 178 (792)
Q Consensus 111 aSGS~DGtVrIWDl-~tgk~v~~L~g--H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t---------g~~v~t~~h 178 (792)
++|+.|+.|++||+ .+++ ...+.+ |...|.+++|+| ++++++++.|+.|++||+++ ++++..+.+
T Consensus 73 ~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 149 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPS-FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV 149 (342)
T ss_dssp EEEETTSCEEEECSSSSSS-EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred EEEcCCCeEEEEEeccCCc-eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEee
Confidence 99999999999999 7775 477888 999999999998 78999999999999999988 777777788
Q ss_pred CCCeeEEEEcCCCcEEEEEc-CCeEEEEECCC-CCcccCCeEEecCCCCeEEEEEcc-CCCeEEEEEeeCc-----cccC
Q 036953 179 YRPIASIAFHAEGELLAVAS-GHKLYIWPYNN-KEEASSPIIVLKTRRSLRAVHFHP-HAAPFVLTAEVND-----LDSS 250 (792)
Q Consensus 179 ~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt-~~~~~~~~~~~~h~~sVtsVafSP-dG~~LlaS~s~~d-----Lrs~ 250 (792)
...+.+++|++++ |++++ ++.|++||+++ ..... ......+...|.+++|+| +++.+++++.+.. ++..
T Consensus 150 ~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 150 KNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG-TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCC-EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred CCceEEEEecCCc--EEEEeCCCeEEEEECCccccccc-eeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 9999999999988 66665 66799999988 54322 233455788999999999 9998877776433 3332
Q ss_pred ------CCceeeecCCC------------cccCCCCceEEEEecCCCEEEEee-----ccCcccCC-CceEEEeEECCCC
Q 036953 251 ------DSSMTRATSPG------------YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSL-PFLIVPSVSIDDS 306 (792)
Q Consensus 251 ------d~~~~l~t~sg------------~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh-~~~VwdV~~SpDG 306 (792)
.....+..... ...+.+....++.+..+..+.++. ....+.+| ...|++++ |||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~ 304 (342)
T 1yfq_A 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD 304 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS
T ss_pred CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC
Confidence 22223332211 223333333333333333333333 12245566 88888888 888
Q ss_pred cEEE
Q 036953 307 RIDL 310 (792)
Q Consensus 307 r~lv 310 (792)
++|+
T Consensus 305 ~~l~ 308 (342)
T 1yfq_A 305 NILC 308 (342)
T ss_dssp SEEE
T ss_pred CeEE
Confidence 8888
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=193.69 Aligned_cols=249 Identities=12% Similarity=0.133 Sum_probs=192.9
Q ss_pred CCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-------Cc
Q 036953 22 RRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-------PL 91 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-------~L 91 (792)
..+...+|+....+... .+...+..+.|++++.+ ++++..++.+++|+.... .+
T Consensus 37 ~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------l~~~~~dg~i~~~~~~~~~~~~~~~~~ 100 (313)
T 3odt_A 37 RDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKEL----------------LLFGGKDTMINGVPLFATSGEDPLYTL 100 (313)
T ss_dssp TTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTE----------------EEEEETTSCEEEEETTCCTTSCC-CEE
T ss_pred cCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCE----------------EEEecCCCeEEEEEeeecCCCCcccch
Confidence 55678899886654333 34567788888887654 455577888888887532 35
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE 171 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~ 171 (792)
.+|...|.+++| +++.|++++.|+.|++|| .++.+..+..|...|.++.|.|.+++++++++.|+.|++|| ..+
T Consensus 101 ~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~ 174 (313)
T 3odt_A 101 IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDK 174 (313)
T ss_dssp CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTE
T ss_pred hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCc
Confidence 689999999999 688999999999999999 67888899999999999999987889999999999999999 445
Q ss_pred EEEEec--cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 172 CIGSCD--FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 172 ~v~t~~--h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
.+..+. +...+.+++|+|++. |++++ ++.|++||+++.+... ....|...|++++|+|++. +++++.+..
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~-l~~~~~dg~-- 247 (313)
T 3odt_A 175 VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR---TYEGHESFVYCIKLLPNGD-IVSCGEDRT-- 247 (313)
T ss_dssp EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECTTSC-EEEEETTSE--
T ss_pred eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh---hhhcCCceEEEEEEecCCC-EEEEecCCE--
Confidence 555553 888999999999999 66665 6669999999877432 4556889999999999994 666665443
Q ss_pred cCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccc
Q 036953 249 SSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSA 328 (792)
Q Consensus 249 s~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~ 328 (792)
+.+|+..++....... .|...|++++|+|+|++++
T Consensus 248 ---------------------v~iwd~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~------------------ 282 (313)
T 3odt_A 248 ---------------------VRIWSKENGSLKQVIT------LPAISIWSVDCMSNGDIIV------------------ 282 (313)
T ss_dssp ---------------------EEEECTTTCCEEEEEE------CSSSCEEEEEECTTSCEEE------------------
T ss_pred ---------------------EEEEECCCCceeEEEe------ccCceEEEEEEccCCCEEE------------------
Confidence 3344444444433332 3777899999999999665
Q ss_pred cccccCCCCCccccccccccccCCC
Q 036953 329 SLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 329 ~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
++.|.+|.-|+...++
T Consensus 283 ---------~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 283 ---------GSSDNLVRIFSQEKSR 298 (313)
T ss_dssp ---------EETTSCEEEEESCGGG
T ss_pred ---------EeCCCcEEEEeCCCCc
Confidence 6778888888876653
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-21 Score=212.03 Aligned_cols=238 Identities=15% Similarity=0.188 Sum_probs=178.2
Q ss_pred cEEEEEeCCCeEEEEeccC----------C----CcCCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcE-----
Q 036953 70 RGLVSWVEAESLRHLSAKY----------C----PLVPPPRSTIAAAFSPDGR-TLASTHGDHTVKIIDCQTGNC----- 129 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t----------~----~L~gH~~~V~sLafSPDG~-~LaSGS~DGtVrIWDl~tgk~----- 129 (792)
..++++..++.|++|+... . .+.+|...|++++|+|++. +|++|+.||.|++||+.++..
T Consensus 142 ~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 221 (430)
T 2xyi_A 142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI 221 (430)
T ss_dssp EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEE
T ss_pred cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCcee
Confidence 4567777889999999875 2 3468999999999999888 999999999999999987422
Q ss_pred --EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC---cEEEEe-ccCCCeeEEEEcCCCc-EEEEEc-CCe
Q 036953 130 --LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS---ECIGSC-DFYRPIASIAFHAEGE-LLAVAS-GHK 201 (792)
Q Consensus 130 --v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg---~~v~t~-~h~s~V~sVafSpdG~-~LasgS-dd~ 201 (792)
...+.+|...|.+++|+|.++.+|++++.|+.|++||++++ +++..+ .|...|++++|+|+++ +|++++ ++.
T Consensus 222 ~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~ 301 (430)
T 2xyi_A 222 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 301 (430)
T ss_dssp ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe
Confidence 46677899999999999977889999999999999999986 455555 6889999999999997 677877 556
Q ss_pred EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-eCccccCCCceeeecCC--CcccCCCCceEEEEecCC
Q 036953 202 LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDLDSSDSSMTRATSP--GYLRYPPPAVFVANAQSG 278 (792)
Q Consensus 202 V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dLrs~d~~~~l~t~s--g~~~~p~~~~~l~~~ssG 278 (792)
|++||++..... ......|...|++++|+|+++.++++++ +..|..|+....-.... .....+ .
T Consensus 302 v~vwd~~~~~~~--~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----------~ 368 (430)
T 2xyi_A 302 VALWDLRNLKLK--LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP-----------P 368 (430)
T ss_dssp EEEEETTCTTSC--SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC-----------T
T ss_pred EEEEeCCCCCCC--eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCC-----------c
Confidence 999999885432 2345568999999999999987666554 44444333221000000 000000 0
Q ss_pred CEEEEeeccCcccCCCceEEEeEECCCCc-EEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 279 DHVSLAAELPLMSSLPFLIVPSVSIDDSR-IDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 279 ~~~~l~s~l~~l~gh~~~VwdV~~SpDGr-~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
..+ ..+.+|...|.++.|+|+|+ +++ ++++|++|.-|++...
T Consensus 369 ~~~------~~~~~h~~~v~~~~~~p~~~~~l~--------------------------s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 369 ELL------FIHGGHTAKISDFSWNPNEPWIIC--------------------------SVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TEE------EECCCCSSCEEEEEECSSSTTEEE--------------------------EEETTSEEEEEEECHH
T ss_pred ceE------EEcCCCCCCceEEEECCCCCCEEE--------------------------EEECCCCEEEeEcccc
Confidence 111 12345888999999999999 777 6888888888886543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-22 Score=207.52 Aligned_cols=247 Identities=13% Similarity=0.130 Sum_probs=186.4
Q ss_pred CCCceeeeEEeeCCCce-EeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc-----CCCCCCeEEEEEcCC---CCE
Q 036953 39 PKTKYVPKRQWVDASKL-KTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL-----VPPPRSTIAAAFSPD---GRT 109 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~l-la~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L-----~gH~~~V~sLafSPD---G~~ 109 (792)
.+...+..++|+|++.. +++|.. ...|+.|++|+..+++. .+|...|.+++|+|+ +++
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~-------------~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNF-------------ARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC---------------CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCC
T ss_pred CCCCceEEEEEcCCCceEEEecCc-------------cCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCce
Confidence 36668899999998743 333310 00277788888776532 368899999999998 799
Q ss_pred EEEEECCCeEEEEECCCCc-EEEEecCCCCCcEEEEE------ccCCCCEEEEEeCCCeEEEEECCCCc-EEEEec-c--
Q 036953 110 LASTHGDHTVKIIDCQTGN-CLKVLSGHRRTPWVVRF------HPLRSEILASGSLDHEVRLWDANTSE-CIGSCD-F-- 178 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tgk-~v~~L~gH~~~VtsVaf------SP~dg~lLaSgS~DgtVrLWDl~tg~-~v~t~~-h-- 178 (792)
|++++.|+.|++||+.+++ .+..+.+|...|.++.| +| ++++|++++.|++|++||+++++ ++..+. +
T Consensus 83 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 161 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG 161 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT
T ss_pred EEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCC
Confidence 9999999999999999888 88999999999999965 67 88999999999999999999886 566663 2
Q ss_pred --CCCeeEEE----EcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEcc---CCCeEEEEEeeCccc
Q 036953 179 --YRPIASIA----FHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP---HAAPFVLTAEVNDLD 248 (792)
Q Consensus 179 --~s~V~sVa----fSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP---dG~~LlaS~s~~dLr 248 (792)
...+.+++ |++++++|++++. +.|++||+++.+. .....+...|++++|+| ++..+++++.+..+.
T Consensus 162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL----RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE----EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce----eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 33788888 7889999999985 5699999998874 23566788999999999 889887776555444
Q ss_pred cCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCc-EEEEccccccCCCCcccccc
Q 036953 249 SSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSR-IDLQHASRRASSSNMQIEPS 327 (792)
Q Consensus 249 s~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr-~lv~~~~~~~~Sg~v~~~~s 327 (792)
.++ ...+....... ...+.+|...|+++.|+|+|+ +++
T Consensus 238 i~d-----------------------~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~----------------- 276 (357)
T 3i2n_A 238 VFD-----------------------MRTQHPTKGFA-SVSEKAHKSTVWQVRHLPQNRELFL----------------- 276 (357)
T ss_dssp EEE-----------------------EEEEETTTEEE-EEEEECCSSCEEEEEEETTEEEEEE-----------------
T ss_pred EEe-----------------------CcCCCccccee-eeccCCCcCCEEEEEECCCCCcEEE-----------------
Confidence 332 21111100000 001235889999999999999 777
Q ss_pred ccccccCCCCCccccccccccccCCC
Q 036953 328 ASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 328 ~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
+++.|.+|.-|+...+.
T Consensus 277 ---------~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 277 ---------TAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp ---------EEETTSEEEEEEEECCS
T ss_pred ---------EEeCCCcEEEeecCCCc
Confidence 78889999999987664
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=204.97 Aligned_cols=226 Identities=16% Similarity=0.208 Sum_probs=182.8
Q ss_pred cEEEEEeCCCeEEEEeccCCCc-----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYCPL-----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~L-----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
..+++++.++.|++|+..++.. ..|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 183 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLS 183 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEE
Confidence 4577788899999999987642 24889999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCC-CcEEEEe-ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEec
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANT-SECIGSC-DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLK 221 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~t-g~~v~t~-~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~ 221 (792)
|++ +++++++.|+.|++||++. +..+..+ .|...|.+++|+|++++|++++. +.|++||+++.+.. .....
T Consensus 184 ~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~---~~~~~ 257 (401)
T 4aez_A 184 WNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK---FTKTN 257 (401)
T ss_dssp EET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE---EEECC
T ss_pred ECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc---EEecC
Confidence 954 7999999999999999994 5555555 58899999999999999999985 55999999987643 24456
Q ss_pred CCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeE
Q 036953 222 TRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSV 301 (792)
Q Consensus 222 h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~ 301 (792)
|...|.+++|+|++..++++++.. ....+.+|+..++....... +...|.+++
T Consensus 258 ~~~~v~~~~~~p~~~~ll~~~~gs--------------------~d~~i~i~d~~~~~~~~~~~-------~~~~v~~~~ 310 (401)
T 4aez_A 258 HNAAVKAVAWCPWQSNLLATGGGT--------------------MDKQIHFWNAATGARVNTVD-------AGSQVTSLI 310 (401)
T ss_dssp CSSCCCEEEECTTSTTEEEEECCT--------------------TTCEEEEEETTTCCEEEEEE-------CSSCEEEEE
T ss_pred CcceEEEEEECCCCCCEEEEecCC--------------------CCCEEEEEECCCCCEEEEEe-------CCCcEEEEE
Confidence 889999999999998888877410 01235566666665554443 556799999
Q ss_pred ECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 302 SIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 302 ~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
|+|+|+++++. +|..|.+|.-|+...+
T Consensus 311 ~s~~~~~l~~~------------------------~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 311 WSPHSKEIMST------------------------HGFPDNNLSIWSYSSS 337 (401)
T ss_dssp ECSSSSEEEEE------------------------ECTTTCEEEEEEEETT
T ss_pred ECCCCCeEEEE------------------------eecCCCcEEEEecCCc
Confidence 99999999810 1556778888886543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-22 Score=218.89 Aligned_cols=205 Identities=14% Similarity=0.108 Sum_probs=160.2
Q ss_pred CCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcE--EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 92 VPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNC--LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 92 ~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~--v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
.+|...|++++|+| ++++||+|+.||+|+|||+.+++. ...+.+|.+.|++++|+|.++++|++|+.|++|++||++
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 46888899999999 678999999999999999987754 445568999999999998778999999999999999998
Q ss_pred CCcEEEEec---cCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-
Q 036953 169 TSECIGSCD---FYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE- 243 (792)
Q Consensus 169 tg~~v~t~~---h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s- 243 (792)
++....... +...+.+++|++++++|++++. +.|++||++.... .....|...|++++|+|+++.++++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~----~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL----WNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC----CCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee----EEEecccceEEeeeecCCCceEEEEecC
Confidence 765544432 3446789999999999999995 5599999975432 234568899999999999987777665
Q ss_pred eCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcc
Q 036953 244 VNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQ 323 (792)
Q Consensus 244 ~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~ 323 (792)
+..++.|+ ...+... .......+|...|.+++|+|||++|+
T Consensus 272 d~~v~iwd-----------------------~~~~~~~---~~~~~~~~h~~~v~~~~~spdg~~l~------------- 312 (435)
T 4e54_B 272 DQTVKIWD-----------------------LRQVRGK---ASFLYSLPHRHPVNAACFSPDGARLL------------- 312 (435)
T ss_dssp TSBCCEEE-----------------------TTTCCSS---SCCSBCCBCSSCEEECCBCTTSSEEE-------------
T ss_pred cceeeEEe-----------------------ccccccc---ceEEEeeeccccccceeECCCCCeeE-------------
Confidence 44444332 2111110 01112235889999999999999999
Q ss_pred ccccccccccCCCCCccccccccccccCC
Q 036953 324 IEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 324 ~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+++.|.+|.-|++..+
T Consensus 313 -------------s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 313 -------------TTDQKSEIRVYSASQW 328 (435)
T ss_dssp -------------EEESSSCEEEEESSSS
T ss_pred -------------EEcCCCEEEEEECCCC
Confidence 8899999999997655
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-21 Score=202.95 Aligned_cols=211 Identities=21% Similarity=0.238 Sum_probs=169.8
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--CCcEEEEecCCCCCcEEEEEccCC--CCEEEEEeCCCeEEEE
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ--TGNCLKVLSGHRRTPWVVRFHPLR--SEILASGSLDHEVRLW 165 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~--tgk~v~~L~gH~~~VtsVafSP~d--g~lLaSgS~DgtVrLW 165 (792)
.+.+|...|++++|+|++++|++|+.|+.|+|||+. +++.+..+.+|...|++++|++ + +++|++++.|++|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEE
Confidence 456899999999999999999999999999999998 5567788999999999999987 5 8999999999999999
Q ss_pred ECCCCc--EEEEe-ccCCCeeEEEEcCC--CcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEcc------
Q 036953 166 DANTSE--CIGSC-DFYRPIASIAFHAE--GELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP------ 233 (792)
Q Consensus 166 Dl~tg~--~v~t~-~h~s~V~sVafSpd--G~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP------ 233 (792)
|+++++ .+..+ .|...|.+++|+|+ +++|++++ ++.|++||++...... ......|...|++++|+|
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC-EEEEECCTTCEEEEEECCCC----
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee-eEEecCCCCceEEEEEcCcccccc
Confidence 999986 55555 48899999999999 89999988 5569999998875443 345567899999999999
Q ss_pred -------CCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCC-
Q 036953 234 -------HAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDD- 305 (792)
Q Consensus 234 -------dG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpD- 305 (792)
++..+++++.+.. +.+|+...+...... ...+.+|...|.+++|+|+
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~-----------------------i~i~d~~~~~~~~~~--~~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNL-----------------------VKIWKYNSDAQTYVL--ESTLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp ------CTTCEEEEEETTSC-----------------------EEEEEEETTTTEEEE--EEEECCCSSCEEEEEECCCC
T ss_pred ccccCCCCCCEEEEEeCCCe-----------------------EEEEEecCCCcceee--EEEEecccCcEeEEEECCCC
Confidence 5776666665443 333443333221110 1124458999999999999
Q ss_pred --CcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 306 --SRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 306 --Gr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
|++|+ +++.|++|.-|+...++
T Consensus 219 ~~~~~l~--------------------------s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 219 LLRSYLA--------------------------SVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp SSSEEEE--------------------------EEETTSCEEEEEESSTT
T ss_pred CCCCeEE--------------------------EEeCCCEEEEEeCCCCC
Confidence 89999 78899999999977663
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=211.66 Aligned_cols=210 Identities=18% Similarity=0.184 Sum_probs=156.8
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc--EEEEecCCCCCcEEEEEcc-CCCCEEEEEeCCCeEEEEE
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHP-LRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk--~v~~L~gH~~~VtsVafSP-~dg~lLaSgS~DgtVrLWD 166 (792)
.+.+|.+.|++++|+|+|++|++|+.|++|+|||+.+++ .+..+.+|.+.|++++|++ .++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 356899999999999999999999999999999998775 4678899999999999975 2478999999999999999
Q ss_pred CCCCc--EEEEe-ccCCCeeEEEEcCC--CcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC----
Q 036953 167 ANTSE--CIGSC-DFYRPIASIAFHAE--GELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA---- 236 (792)
Q Consensus 167 l~tg~--~v~t~-~h~s~V~sVafSpd--G~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~---- 236 (792)
+++++ .+..+ .|...|.+++|+|+ +.+|++++. +.|++||++.............|...|.+++|+|+..
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 99874 45555 58899999999998 789999984 5599999987642210122345788899999999842
Q ss_pred -------------eEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEEC
Q 036953 237 -------------PFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSI 303 (792)
Q Consensus 237 -------------~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~S 303 (792)
.|++++.+ ..+.+|+...+..... ...+.+|...|++++|+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D-----------------------~~v~lWd~~~~~~~~~---~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCD-----------------------NLIKLWKEEEDGQWKE---EQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTT-----------------------SBCCEEEECTTSCEEE---EECCBCCSSCEEEEECC
T ss_pred cccccccCccccceEEEecCC-----------------------CeEEEEEeCCCCccce---eeecccCCCceEEEEec
Confidence 22222212 2344455433221111 12356799999999999
Q ss_pred CCC----cEEEEccccccCCCCccccccccccccCCCCCccccccccccccC
Q 036953 304 DDS----RIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFP 351 (792)
Q Consensus 304 pDG----r~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~ 351 (792)
|++ ++|+ +++.|++|.-|+...
T Consensus 222 p~~~~~~~~la--------------------------s~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 222 PSIGLPTSTIA--------------------------SCSQDGRVFIWTCDD 247 (316)
T ss_dssp CCSSCSCCEEE--------------------------EEETTCEEEEEECSS
T ss_pred CCCCCCCceEE--------------------------EEcCCCeEEEEEccC
Confidence 997 7888 899999999998654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.1e-21 Score=195.03 Aligned_cols=209 Identities=15% Similarity=0.167 Sum_probs=165.4
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----cEEEEecCCCCCcEEEEEccC-CCCEEEEEeCCCeEEEE
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG----NCLKVLSGHRRTPWVVRFHPL-RSEILASGSLDHEVRLW 165 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg----k~v~~L~gH~~~VtsVafSP~-dg~lLaSgS~DgtVrLW 165 (792)
+.+|.+.|++++|+|++++|++|+.||.|+|||+.++ +....+.+|...|++++|+|. ++++|++++.|++|++|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 5689999999999999999999999999999999876 467778899999999999984 48999999999999999
Q ss_pred ECCCC---------cEEEEe-ccCCCeeEEEEcCC--CcEEEEEc-CCeEEEEECCCCCcccCCeE----------EecC
Q 036953 166 DANTS---------ECIGSC-DFYRPIASIAFHAE--GELLAVAS-GHKLYIWPYNNKEEASSPII----------VLKT 222 (792)
Q Consensus 166 Dl~tg---------~~v~t~-~h~s~V~sVafSpd--G~~LasgS-dd~V~IWDlrt~~~~~~~~~----------~~~h 222 (792)
|++++ +++..+ .|...|.+++|+|+ +++|++++ ++.|++||+++.+....... ...+
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 99886 445555 58899999999999 99999988 55599999988775432111 1146
Q ss_pred CCCeEEEEEccC---CCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEE
Q 036953 223 RRSLRAVHFHPH---AAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVP 299 (792)
Q Consensus 223 ~~sVtsVafSPd---G~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~Vwd 299 (792)
...+.+++|+|+ +..+++++.+. ...++....+....+. .+.+|...|.+
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~----~~~~h~~~i~~ 219 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQ-----------------------AIIYQRGKDGKLHVAA----KLPGHKSLIRS 219 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTE-----------------------EEEEEECTTSCEEEEE----ECCCCCSCEEE
T ss_pred ccceeEEEeccCCCCCcEEEEecCCC-----------------------cEEEEccCCCceeeee----ecCCCCcceeE
Confidence 778999999997 77565555322 1223333333332222 24568999999
Q ss_pred eEECCCC----cEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 300 SVSIDDS----RIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 300 V~~SpDG----r~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
++|+|+| ++|+ +++.|++|.-||...+
T Consensus 220 ~~~~p~~~~~~~~l~--------------------------s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 220 ISWAPSIGRWYQLIA--------------------------TGCKDGRIRIFKITEK 250 (351)
T ss_dssp EEECCCSSCSSEEEE--------------------------EEETTSCEEEEEEEEC
T ss_pred EEECCCCCCcceEEE--------------------------EEcCCCeEEEEeCCCC
Confidence 9999998 8888 7899999999997655
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-21 Score=198.96 Aligned_cols=206 Identities=14% Similarity=0.208 Sum_probs=170.3
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+.+|...|++++|+|++++|++++.|+.|+|||+.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||+.++
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~ 106 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNG 106 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Confidence 568999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cEEEEeccCCCeeEEEEcCCCcEEEEEcC------CeEEEEECCCCCccc--------CCeEEecCCC--CeEEEEEccC
Q 036953 171 ECIGSCDFYRPIASIAFHAEGELLAVASG------HKLYIWPYNNKEEAS--------SPIIVLKTRR--SLRAVHFHPH 234 (792)
Q Consensus 171 ~~v~t~~h~s~V~sVafSpdG~~LasgSd------d~V~IWDlrt~~~~~--------~~~~~~~h~~--sVtsVafSPd 234 (792)
+++..+.+...+.+++|+|++++|+++++ +.|++||++...... .......+.. .+.+++|+|+
T Consensus 107 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (369)
T 3zwl_B 107 QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK 186 (369)
T ss_dssp CEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred cEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence 99999999999999999999999999885 469999998765322 1122233444 8999999999
Q ss_pred CCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecC-CCEEEEeeccCcccCCCceEEEeEECCCCcEEEEcc
Q 036953 235 AAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQS-GDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHA 313 (792)
Q Consensus 235 G~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ss-G~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~ 313 (792)
++.+++++.+.. +.+|+... +..... +..|...|.+++|+|+|++|+
T Consensus 187 ~~~l~~~~~dg~-----------------------i~i~d~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~--- 234 (369)
T 3zwl_B 187 GKYIIAGHKDGK-----------------------ISKYDVSNNYEYVDS------IDLHEKSISDMQFSPDLTYFI--- 234 (369)
T ss_dssp GCEEEEEETTSE-----------------------EEEEETTTTTEEEEE------EECCSSCEEEEEECTTSSEEE---
T ss_pred CCEEEEEcCCCE-----------------------EEEEECCCCcEeEEE------EecCCCceeEEEECCCCCEEE---
Confidence 998777664443 33344333 222222 233788999999999999999
Q ss_pred ccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 314 SRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 314 ~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+++.|++|.-||...+
T Consensus 235 -----------------------~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 235 -----------------------TSSRDTNSFLVDVSTL 250 (369)
T ss_dssp -----------------------EEETTSEEEEEETTTC
T ss_pred -----------------------EecCCceEEEEECCCC
Confidence 6778899999996544
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.9e-22 Score=214.40 Aligned_cols=258 Identities=11% Similarity=0.068 Sum_probs=183.6
Q ss_pred CCCceeeeEEeeC-CCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC---C-----CcC-CCCCCeEEEEEcCCCC
Q 036953 39 PKTKYVPKRQWVD-ASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY---C-----PLV-PPPRSTIAAAFSPDGR 108 (792)
Q Consensus 39 ~~tk~V~s~aWsp-d~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t---~-----~L~-gH~~~V~sLafSPDG~ 108 (792)
.+...+.+++|++ ++. .+++++.|++|++|+... + .+. +|...|.+++|+|+++
T Consensus 61 ~h~~~V~~~~~s~~~~~----------------~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 61 NEPNSITSSAVSPGETP----------------YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD 124 (437)
T ss_dssp TTTSCEEEEEEECSSSC----------------EEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSS
T ss_pred CCCCceEEEEECCCCCC----------------EEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCC
Confidence 4556788888887 655 455667899999999865 2 122 6899999999999999
Q ss_pred EEEEEECCCeEEEEECC---CCcEEEEecC------------CCCCcEEEE--EccCCCCEEEEEeCCCeEEEEECCCCc
Q 036953 109 TLASTHGDHTVKIIDCQ---TGNCLKVLSG------------HRRTPWVVR--FHPLRSEILASGSLDHEVRLWDANTSE 171 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~---tgk~v~~L~g------------H~~~VtsVa--fSP~dg~lLaSgS~DgtVrLWDl~tg~ 171 (792)
+|++++.|++|++||+. +++.+..+.+ +...+.++. +++ ++.+|++++.|++|++||+++++
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 203 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLE 203 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCe
Confidence 99999999999999994 5555444332 455666666 556 78999999999999999999999
Q ss_pred EEEEec---cCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCCCCeEEEEEcc----CCCeEEEEEe
Q 036953 172 CIGSCD---FYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP----HAAPFVLTAE 243 (792)
Q Consensus 172 ~v~t~~---h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP----dG~~LlaS~s 243 (792)
++..+. |...|.+++|+|++++|++++.+ .|++||+++++... .....|...|++++|+| ++..+++++.
T Consensus 204 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 204 RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR--SWSFGDHAPITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE--EEBCTTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE--EEecCCCCceEEEEeccccCCCccEEEEEcC
Confidence 988884 68999999999999999999954 49999999876432 11236777899997765 4655555544
Q ss_pred eCccccCCCc-----eeeecCCCc---ccCCCCceEEEEecCCCEEEEeeccCcccC--CCceEEEeEECCCCcEEEEcc
Q 036953 244 VNDLDSSDSS-----MTRATSPGY---LRYPPPAVFVANAQSGDHVSLAAELPLMSS--LPFLIVPSVSIDDSRIDLQHA 313 (792)
Q Consensus 244 ~~dLrs~d~~-----~~l~t~sg~---~~~p~~~~~l~~~ssG~~~~l~s~l~~l~g--h~~~VwdV~~SpDGr~lv~~~ 313 (792)
+..++.|+.. ..+...... ..+.+. +..+ ....+.+ |...|++++|+ +|++|+
T Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l----~~~~~~~~~~~~~v~~l~~~-~~~~l~--- 344 (437)
T 3gre_A 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI---------EKGL----EELNFCGIRSLNALSTISVS-NDKILL--- 344 (437)
T ss_dssp TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB---------CSSG----GGCCCCCCCSGGGGCCEEEE-TTEEEE---
T ss_pred CCcEEEEEcCCCcEEEEEEcCCCCCccceeccc---------cccc----ccceecccccCCceEEEEEC-CceEEE---
Confidence 4334433322 222211110 011110 0000 1112334 88889999999 888888
Q ss_pred ccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 314 SRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 314 ~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
+++.|++|.-||+..++..
T Consensus 345 -----------------------s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 345 -----------------------TDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp -----------------------EEGGGTEEEEEETTCGGGC
T ss_pred -----------------------ecCCCCeEEEEECCCcccc
Confidence 8999999999998776433
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.6e-22 Score=209.14 Aligned_cols=205 Identities=18% Similarity=0.190 Sum_probs=158.8
Q ss_pred CCCceEeeecccc--eee---CCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC------
Q 036953 22 RRRARNVSRLLAH--REI---SPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP------ 90 (792)
Q Consensus 22 ~s~~r~V~~l~~~--rel---s~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~------ 90 (792)
..+.+.+|+.... +.+ ..+...+..++|++++++ +++++.|+.|++|+...+.
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~----------------l~s~s~d~~v~vwd~~~~~~~~~~~ 94 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNR----------------IVTCSQDRNAYVYEKRPDGTWKQTL 94 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCC----------------EEEEETTSSEEEC------CCCCEE
T ss_pred CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCE----------------EEEEeCCCeEEEEEcCCCCceeeee
Confidence 4677889988765 333 245667889999988654 4555778889999887543
Q ss_pred -cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc---EEEEecC-CCCCcEEEEEccCCCCEEEEEeCCCeEEEE
Q 036953 91 -LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN---CLKVLSG-HRRTPWVVRFHPLRSEILASGSLDHEVRLW 165 (792)
Q Consensus 91 -L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk---~v~~L~g-H~~~VtsVafSP~dg~lLaSgS~DgtVrLW 165 (792)
+.+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+.+ |...|++++|+| ++++|++++.|++|++|
T Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw 173 (377)
T 3dwl_C 95 VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVL 173 (377)
T ss_dssp ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEE
T ss_pred EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEE
Confidence 56899999999999999999999999999999999887 4677887 999999999999 89999999999999999
Q ss_pred ECC------------------CCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccC-CeEEecCCCC
Q 036953 166 DAN------------------TSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASS-PIIVLKTRRS 225 (792)
Q Consensus 166 Dl~------------------tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~-~~~~~~h~~s 225 (792)
|++ .++++..+.|...|.+++|+|++++|++++ ++.|++||+++.+.... ......|...
T Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 253 (377)
T 3dwl_C 174 SAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLP 253 (377)
T ss_dssp EECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSC
T ss_pred EEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCc
Confidence 985 344566667888999999999999999998 55699999998875210 1245568889
Q ss_pred eEEEEEccCCCeEEEEEee
Q 036953 226 LRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 226 VtsVafSPdG~~LlaS~s~ 244 (792)
|++++|+|+++.|+ ++.+
T Consensus 254 v~~~~~s~~~~~l~-~~~~ 271 (377)
T 3dwl_C 254 LRSLLWANESAIVA-AGYN 271 (377)
T ss_dssp EEEEEEEETTEEEE-EESS
T ss_pred eEEEEEcCCCCEEE-EEcC
Confidence 99999999998554 4443
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=210.97 Aligned_cols=228 Identities=13% Similarity=0.073 Sum_probs=148.9
Q ss_pred CCcEEEEEeCCCeEEEEeccCC---------CcCCCCCCeEEEEEcC--------CCCEEEEEECCCeEEEEECCCCcEE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC---------PLVPPPRSTIAAAFSP--------DGRTLASTHGDHTVKIIDCQTGNCL 130 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~---------~L~gH~~~V~sLafSP--------DG~~LaSGS~DGtVrIWDl~tgk~v 130 (792)
....+++++.|++|++|+...+ .+.+|.+.|++++|+| |+++|++|+.|++|+|||+.++.++
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~ 179 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI 179 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence 4456889999999999998654 3679999999999997 8899999999999999999988888
Q ss_pred EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------------ccCCCeeE
Q 036953 131 KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC--------------------------DFYRPIAS 184 (792)
Q Consensus 131 ~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~--------------------------~h~s~V~s 184 (792)
..+.+|...|.+++|+|++..+|++++.|++|++||+++++..... .+...+.+
T Consensus 180 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~ 259 (393)
T 4gq1_A 180 LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLAN 259 (393)
T ss_dssp EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSE
T ss_pred eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccccee
Confidence 8888899999999999944568999999999999999987543321 24567888
Q ss_pred EEEc-CCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC---CCceeeecC
Q 036953 185 IAFH-AEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS---DSSMTRATS 259 (792)
Q Consensus 185 VafS-pdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~---d~~~~l~t~ 259 (792)
+.|+ ++++.|++++ ++.+++||+...+... ....+...+..+.+.|+.+.+............ +..+...
T Consensus 260 v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-- 334 (393)
T 4gq1_A 260 VRWIGSDGSGILAMCKSGAWLRWNLFANNDYN---EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA-- 334 (393)
T ss_dssp EEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE--
T ss_pred eeeecCCCCEEEEEeCCCCEEEEECccCCCCc---eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE--
Confidence 8886 8999999998 4559999998776433 233455556666666654422110000000000 0000000
Q ss_pred CCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 260 PGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 260 sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
......+.+|+..++..... ..+|...|++++|+|||++|+
T Consensus 335 ----gs~Dg~V~lwd~~~~~~~~~------~~~~~~~V~svafspdG~~LA 375 (393)
T 4gq1_A 335 ----HSQHGLIQLINTYEKDSNSI------PIQLGMPIVDFCWHQDGSHLA 375 (393)
T ss_dssp ----ETTTTEEEEEETTCTTCCEE------EEECSSCEEEEEECTTSSEEE
T ss_pred ----ECCCCEEEEEECCCCcEEEE------ecCCCCcEEEEEEcCCCCEEE
Confidence 00112344455444443222 234778999999999999999
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-20 Score=211.06 Aligned_cols=204 Identities=13% Similarity=0.163 Sum_probs=160.6
Q ss_pred CCCceEeeecccc-----------eeeCCCCceeeeEEeeCCCceEeecCCC----cee---------------------
Q 036953 22 RRRARNVSRLLAH-----------REISPKTKYVPKRQWVDASKLKTCGPSD----SSV--------------------- 65 (792)
Q Consensus 22 ~s~~r~V~~l~~~-----------rels~~tk~V~s~aWspd~~lla~G~~a----~sv--------------------- 65 (792)
..+.+.+|+.... +.+..+...+..++|+++++.++++... ..+
T Consensus 86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~ 165 (615)
T 1pgu_A 86 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINA 165 (615)
T ss_dssp TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEE
T ss_pred CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEE
Confidence 4567899988532 2333466789999999999987665432 111
Q ss_pred ----ecCCcEEEEEeCCCeEEEEeccCC----CcCCCCC---CeEEEEEcCC-CCEEEEEECCCeEEEEECCCCcEEEEe
Q 036953 66 ----RDAKRGLVSWVEAESLRHLSAKYC----PLVPPPR---STIAAAFSPD-GRTLASTHGDHTVKIIDCQTGNCLKVL 133 (792)
Q Consensus 66 ----~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~---~V~sLafSPD-G~~LaSGS~DGtVrIWDl~tgk~v~~L 133 (792)
.+++..++++..++.+++|+.... .+.+|.. .|.+++|+|+ +++|++++.|+.|++||+.+++.+..+
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred EEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 112237899999999999998765 4567988 9999999999 999999999999999999999999999
Q ss_pred -c---CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC-----CCeeEEEEcCCCcEEEEEc-CCeEE
Q 036953 134 -S---GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY-----RPIASIAFHAEGELLAVAS-GHKLY 203 (792)
Q Consensus 134 -~---gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~-----s~V~sVafSpdG~~LasgS-dd~V~ 203 (792)
. +|...|.+++|+ ++++|++++.|++|++||+++++.+..+... ..+.++.|. +++++++++ ++.|+
T Consensus 246 ~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~ 322 (615)
T 1pgu_A 246 EDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLN 322 (615)
T ss_dssp CBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEE
T ss_pred cccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEE
Confidence 6 899999999999 7899999999999999999999998888543 678888886 888888888 55599
Q ss_pred EEECCCCCcccCCeEEecCCCCeEEEEE
Q 036953 204 IWPYNNKEEASSPIIVLKTRRSLRAVHF 231 (792)
Q Consensus 204 IWDlrt~~~~~~~~~~~~h~~sVtsVaf 231 (792)
+||+++.+... ....|...|++++|
T Consensus 323 ~~d~~~~~~~~---~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 323 FYELGHDEVLK---TISGHNKGITALTV 347 (615)
T ss_dssp EEETTEEEEEE---EECCCSSCEEEEET
T ss_pred EEECCCCcEEE---EEeCCCCCEEEEEe
Confidence 99998755322 23334455555555
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-21 Score=202.30 Aligned_cols=231 Identities=15% Similarity=0.131 Sum_probs=174.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc--EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk--~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
.|...|.+++|+|++++|++++.|+.|+|||+.+++ .+..+.+|...|.+++|+| ++++|++++.|++|++||++++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETT
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCC
Confidence 478899999999999999999999999999999887 8889999999999999999 9999999999999999999988
Q ss_pred cEEEEe---ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCe-EEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 171 ECIGSC---DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPI-IVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 171 ~~v~t~---~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~-~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+....+ .+...|.+++|+|++++|++++. +.|++||++..+...... ....|...|++++|+|+++.+++++.+.
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 755443 58889999999999999999985 459999998876422111 2244788999999999999888777655
Q ss_pred ccccCCC--------------------ceeeecC---CC---cccCCCCceEEEEecCCCEEEEee-----ccCcccCCC
Q 036953 246 DLDSSDS--------------------SMTRATS---PG---YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLP 294 (792)
Q Consensus 246 dLrs~d~--------------------~~~l~t~---sg---~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~ 294 (792)
.+..++. ...+... .+ ...+.+....++.+..+..+.++. ....+..|.
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 5554441 1111111 11 223333433444444444444444 122345677
Q ss_pred ceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccC
Q 036953 295 FLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFP 351 (792)
Q Consensus 295 ~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~ 351 (792)
..|.+++|+|+|++++ ++ .|.+|.-|+...
T Consensus 245 ~~v~~~~~~~~~~~l~--------------------------~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 245 LPLLAVTFITESSLVA--------------------------AG-HDCFPVLFTYDS 274 (372)
T ss_dssp CCEEEEEEEETTEEEE--------------------------EE-TTSSCEEEEEET
T ss_pred CCeEEEEEecCCCEEE--------------------------EE-eCCeEEEEEccC
Confidence 8888999999998887 44 777888888665
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=219.78 Aligned_cols=231 Identities=18% Similarity=0.210 Sum_probs=185.7
Q ss_pred CCCCCceEeeecccc--------eeeCCCCceeeeEEeeCCCceEeecCCCceee--c----------------------
Q 036953 20 HLRRRARNVSRLLAH--------REISPKTKYVPKRQWVDASKLKTCGPSDSSVR--D---------------------- 67 (792)
Q Consensus 20 s~~s~~r~V~~l~~~--------rels~~tk~V~s~aWspd~~lla~G~~a~sv~--d---------------------- 67 (792)
....+.+++|+.... +.+..+...+.++.|+++++++++|..+..++ +
T Consensus 401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480 (694)
T ss_dssp EETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence 345677899987542 34456777899999999998877765444322 1
Q ss_pred --CCcEEEEEeCCCeEEEEeccCC-------CcCCCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCcEEEEecCC
Q 036953 68 --AKRGLVSWVEAESLRHLSAKYC-------PLVPPPRSTIAAAFSPDG--RTLASTHGDHTVKIIDCQTGNCLKVLSGH 136 (792)
Q Consensus 68 --~~~~L~S~s~d~sIrvWd~~t~-------~L~gH~~~V~sLafSPDG--~~LaSGS~DGtVrIWDl~tgk~v~~L~gH 136 (792)
.+..+++++.|++|++|+.... ...+|...|.+++|+|++ ..|++++.|++|+|||+.++++...+.+|
T Consensus 481 s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h 560 (694)
T 3dm0_A 481 SLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH 560 (694)
T ss_dssp CTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred eCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 2335788899999999997533 235799999999999976 68999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCC
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSP 216 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~ 216 (792)
.+.|++++|+| ++++|++++.|++|++||+++++.+..+.+...+.+++|+|++.+|++++++.|+|||+++.+.....
T Consensus 561 ~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~ 639 (694)
T 3dm0_A 561 TGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDL 639 (694)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhh
Confidence 99999999999 99999999999999999999999998888888999999999999999999888999999887643200
Q ss_pred e----------------EEecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 217 I----------------IVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 217 ~----------------~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
. ....+...+++++|+|+|++|++++.+..|+.|+
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 640 KVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp CCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 0 0001122478999999999888877777666554
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-21 Score=227.62 Aligned_cols=249 Identities=13% Similarity=0.081 Sum_probs=190.2
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcCC--CC
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSPD--GR 108 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSPD--G~ 108 (792)
+..+...+.+++|+++++++ ++++.|+.|++|+.... .+.+|.+.|.+++|+++ ++
T Consensus 5 l~gH~~~V~~l~~s~dg~~l----------------atg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRL----------------ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT 68 (753)
T ss_dssp ---CCCCEEEECCCSSSCCE----------------EEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS
T ss_pred cccCcceeEEEEECCCCCeE----------------EEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC
Confidence 34566788999999886644 44467788888887522 46789999999999987 99
Q ss_pred EEEEEECCCeEEEEECCCCc--EEEEecCCCCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCCc---EEEEeccCCC
Q 036953 109 TLASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHPLR--SEILASGSLDHEVRLWDANTSE---CIGSCDFYRP 181 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~tgk--~v~~L~gH~~~VtsVafSP~d--g~lLaSgS~DgtVrLWDl~tg~---~v~t~~h~s~ 181 (792)
+|++|+.||.|++||+.+++ .+..+.+|...|++++|+| + ++++++++.|++|++||++++. ......+...
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~ 147 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred EEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence 99999999999999999887 7788889999999999999 7 8999999999999999998873 2333368899
Q ss_pred eeEEEEcC-------------CCcEEEEEc-CCeEEEEECCCCCcccC-CeEEecCCCCeEEEEEccC---CCeEEEEEe
Q 036953 182 IASIAFHA-------------EGELLAVAS-GHKLYIWPYNNKEEASS-PIIVLKTRRSLRAVHFHPH---AAPFVLTAE 243 (792)
Q Consensus 182 V~sVafSp-------------dG~~LasgS-dd~V~IWDlrt~~~~~~-~~~~~~h~~sVtsVafSPd---G~~LlaS~s 243 (792)
|.+++|+| ++++|++++ ++.|++||+++...... ......|...|++++|+|+ ++.+++++.
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 99999999 588899988 55599999987754321 2234568899999999999 776666665
Q ss_pred eCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcc
Q 036953 244 VNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQ 323 (792)
Q Consensus 244 ~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~ 323 (792)
+..++ +|+...+..... ........|...|++++|+|+|++++
T Consensus 228 Dg~I~-----------------------iwd~~~~~~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~------------- 270 (753)
T 3jro_A 228 DRTCI-----------------------IWTQDNEQGPWK-KTLLKEEKFPDVLWRASWSLSGNVLA------------- 270 (753)
T ss_dssp SSCEE-----------------------EEEESSSSSCCB-CCBSSSSCCSSCCCCEEECTTTCCEE-------------
T ss_pred CCEEE-----------------------EecCCCCCCcce-eEEeccCCCCCceEEEEEcCCCCEEE-------------
Confidence 54333 333333211000 01122345888999999999999999
Q ss_pred ccccccccccCCCCCccccccccccccCC
Q 036953 324 IEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 324 ~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+++.|++|.-|+...+
T Consensus 271 -------------s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 271 -------------LSGGDNKVTLWKENLE 286 (753)
T ss_dssp -------------EECSSSCEECCBCCSS
T ss_pred -------------EEcCCCEEEEEecCCC
Confidence 6778888888887754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-20 Score=218.30 Aligned_cols=238 Identities=16% Similarity=0.158 Sum_probs=191.5
Q ss_pred CCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCC
Q 036953 22 RRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPP 94 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH 94 (792)
..+.+.+|+....+.+. .+...+..+.|+|+++++ ++++.++.|++|+..++ .+.+|
T Consensus 33 ~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l----------------~~~~~dg~i~vw~~~~~~~~~~~~~~ 96 (814)
T 3mkq_A 33 YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWI----------------IVGSDDFRIRVFNYNTGEKVVDFEAH 96 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEE----------------EEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEE----------------EEEeCCCeEEEEECCCCcEEEEEecC
Confidence 45779999987654433 566788999999987654 44467888999998765 35689
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG-NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg-k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
...|.+++|+|++++|++++.|+.|++||+.++ .....+.+|...|.+++|+|.+++++++++.|++|++||+.+++..
T Consensus 97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~ 176 (814)
T 3mkq_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence 999999999999999999999999999999887 6778888999999999999967789999999999999999988766
Q ss_pred EEec--cCCCeeEEEEcC--CCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 174 GSCD--FYRPIASIAFHA--EGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 174 ~t~~--h~s~V~sVafSp--dG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
..+. +...+..++|+| ++.+|++++. +.|++||+++++.. .....|...|++++|+|+++.+++++.+..
T Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-- 251 (814)
T 3mkq_A 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVFHPTLPIIISGSEDGT-- 251 (814)
T ss_dssp EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE---EEEECCSSCEEEEEECSSSSEEEEEETTSC--
T ss_pred eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE---EEEcCCCCCEEEEEEcCCCCEEEEEeCCCe--
Confidence 6653 448899999999 9999999984 55999999887643 345568899999999999997776664443
Q ss_pred cCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCc
Q 036953 249 SSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSR 307 (792)
Q Consensus 249 s~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr 307 (792)
+.+|...++...... ..|...++.++++|+|+
T Consensus 252 ---------------------v~vwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 252 ---------------------LKIWNSSTYKVEKTL------NVGLERSWCIATHPTGR 283 (814)
T ss_dssp ---------------------EEEEETTTCSEEEEE------CCSSSSEEEEEECTTCG
T ss_pred ---------------------EEEEECCCCcEEEEe------ecCCCcEEEEEEccCCC
Confidence 444554454443333 23677899999999997
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=199.63 Aligned_cols=202 Identities=13% Similarity=0.130 Sum_probs=161.7
Q ss_pred CcCCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEec--CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 90 PLVPPPRSTIAAAFSPDG-RTLASTHGDHTVKIIDCQTGNCLKVLS--GHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG-~~LaSGS~DGtVrIWDl~tgk~v~~L~--gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
.+.+|...|++++|+|++ ++|++|+.|+.|+|||+.+++....+. +|...|.+++|+|+++++|++++.|++|++||
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 346899999999999998 999999999999999999888777765 69999999999996679999999999999999
Q ss_pred CCCCcEEEEe-c---cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 167 ANTSECIGSC-D---FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 167 l~tg~~v~t~-~---h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
+++. .+..+ . +...|.+++|+|++++|++++ ++.|++||++ .+. ......|...|++++|+|+++.++++
T Consensus 148 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~---~~~~~~h~~~v~~~~~~~~~~~~l~s 222 (383)
T 3ei3_B 148 FSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHE---IFKEKLHKAKVTHAEFNPRCDWLMAT 222 (383)
T ss_dssp TTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCE---EEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred CCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCE---EEEeccCCCcEEEEEECCCCCCEEEE
Confidence 9964 44444 2 347899999999999999999 4559999994 332 23456789999999999999944444
Q ss_pred E-eeCccccCCCceeeecCCCcccCCCCceEEEEecC----CCEEEEeeccCcccCCCceEEEeEECC-CCcEEEEcccc
Q 036953 242 A-EVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQS----GDHVSLAAELPLMSSLPFLIVPSVSID-DSRIDLQHASR 315 (792)
Q Consensus 242 ~-s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ss----G~~~~l~s~l~~l~gh~~~VwdV~~Sp-DGr~lv~~~~~ 315 (792)
+ .+..++ +|+... +...... +|...|.+++|+| +|++|+
T Consensus 223 ~~~d~~i~-----------------------iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~~l~----- 267 (383)
T 3ei3_B 223 SSVDATVK-----------------------LWDLRNIKDKNSYIAEM-------PHEKPVNAAYFNPTDSTKLL----- 267 (383)
T ss_dssp EETTSEEE-----------------------EEEGGGCCSTTCEEEEE-------ECSSCEEEEEECTTTSCEEE-----
T ss_pred EeCCCEEE-----------------------EEeCCCCCcccceEEEe-------cCCCceEEEEEcCCCCCEEE-----
Confidence 4 343333 333333 3333333 2788999999999 999999
Q ss_pred ccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 316 RASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 316 ~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+++.|.+|.-||...+
T Consensus 268 ---------------------~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 268 ---------------------TTDQRNEIRVYSSYDW 283 (383)
T ss_dssp ---------------------EEESSSEEEEEETTBT
T ss_pred ---------------------EEcCCCcEEEEECCCC
Confidence 7888999999997655
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=210.39 Aligned_cols=253 Identities=11% Similarity=0.061 Sum_probs=181.9
Q ss_pred ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC--------------CcCCCCCCeEEEEEcCCC
Q 036953 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC--------------PLVPPPRSTIAAAFSPDG 107 (792)
Q Consensus 42 k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~--------------~L~gH~~~V~sLafSPDG 107 (792)
..+.+++|+|+++++++|.....- . +-++.|++|+.... .+.+|.+.|.+++++ +
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~-s--------Gi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~ 83 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGN-N--------GIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--K 83 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSS-S--------SCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--T
T ss_pred CCEEEEEEeCCCcEEEEECCCccc-c--------CCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--C
Confidence 358999999999988876321110 0 12345677765422 356888899888775 5
Q ss_pred CEEEEEE-----------CCCeEEEEECCCCcEE----EEe-----cCCCCCcEEEEEccCCCCEEEEE--eCCCeEEEE
Q 036953 108 RTLASTH-----------GDHTVKIIDCQTGNCL----KVL-----SGHRRTPWVVRFHPLRSEILASG--SLDHEVRLW 165 (792)
Q Consensus 108 ~~LaSGS-----------~DGtVrIWDl~tgk~v----~~L-----~gH~~~VtsVafSP~dg~lLaSg--S~DgtVrLW 165 (792)
+.+++|. .|+.+++|++...+.. ... ..+...+.+++|+| |+++++++ +.|++|++|
T Consensus 84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iw 162 (365)
T 4h5i_A 84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRII 162 (365)
T ss_dssp TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEE
T ss_pred CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEe
Confidence 6676654 4778999998665322 111 13456789999999 88887654 478999999
Q ss_pred ECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 166 DANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 166 Dl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
|+++++++..+.+...|.+++|+|+|++|++++++++.+|+..+++... ......|...|++++|+|+++.+++++.+.
T Consensus 163 d~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~fspdg~~l~~~s~d~ 241 (365)
T 4h5i_A 163 DPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA-RKTDFDKNWSLSKINFIADDTVLIAASLKK 241 (365)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE-EECCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred ECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCccee-eeecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 9999999999999999999999999999999998889999988776432 112344778899999999999877766543
Q ss_pred ccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccc
Q 036953 246 DLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIE 325 (792)
Q Consensus 246 dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~ 325 (792)
.... .+..|....+...... ...+.+|...|.+++|+|||++|+
T Consensus 242 ~~~~-------------------~i~~~~~~~~~~~~~~--~~~~~~~~~~V~~~~~Spdg~~la--------------- 285 (365)
T 4h5i_A 242 GKGI-------------------VLTKISIKSGNTSVLR--SKQVTNRFKGITSMDVDMKGELAV--------------- 285 (365)
T ss_dssp SCCE-------------------EEEEEEEETTEEEEEE--EEEEESSCSCEEEEEECTTSCEEE---------------
T ss_pred ccee-------------------EEeecccccceeccee--eeeecCCCCCeEeEEECCCCCceE---------------
Confidence 2110 1233333333221111 122445889999999999999999
Q ss_pred ccccccccCCCCCccccccccccccCCCC
Q 036953 326 PSASLHLQSDSNVEQDGTVPSMETFPVIP 354 (792)
Q Consensus 326 ~s~~~q~~~~~sgs~D~tv~p~~~~~~~p 354 (792)
+|+.|++|.-||+..+++
T Consensus 286 -----------sgs~D~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 286 -----------LASNDNSIALVKLKDLSM 303 (365)
T ss_dssp -----------EEETTSCEEEEETTTTEE
T ss_pred -----------EEcCCCEEEEEECCCCcE
Confidence 899999999999877643
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=209.44 Aligned_cols=266 Identities=11% Similarity=0.090 Sum_probs=177.6
Q ss_pred CCCceEeeeccc---ceee----C-CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEecc---CC-
Q 036953 22 RRRARNVSRLLA---HREI----S-PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAK---YC- 89 (792)
Q Consensus 22 ~s~~r~V~~l~~---~rel----s-~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~---t~- 89 (792)
..+.+++|+... .... . .+...+.+++|++++.++ ++++.|+.|++|+.. .+
T Consensus 84 ~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l----------------~s~s~dg~i~vwd~~~~~~~~ 147 (437)
T 3gre_A 84 DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAF----------------AVSSKDGQIIVLKVNHYQQES 147 (437)
T ss_dssp TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEE----------------EEEETTSEEEEEEEEEEEETT
T ss_pred CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEE----------------EEEeCCCEEEEEEeccccCCc
Confidence 556788998755 2111 1 245567888888776644 444566666666653 11
Q ss_pred -------------CcCC--CCCCeEEEE--EcCCCCEEEEEECCCeEEEEECCCCcEEEEecC--CCCCcEEEEEccCCC
Q 036953 90 -------------PLVP--PPRSTIAAA--FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG--HRRTPWVVRFHPLRS 150 (792)
Q Consensus 90 -------------~L~g--H~~~V~sLa--fSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g--H~~~VtsVafSP~dg 150 (792)
.+.. +...+.++. +++++++|++++.|+.|++||+.+++++..+.+ |.+.|++++|+| ++
T Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~ 226 (437)
T 3gre_A 148 EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-EC 226 (437)
T ss_dssp EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TS
T ss_pred eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CC
Confidence 1112 667788888 668999999999999999999999999999998 899999999999 89
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEe--ccCCCeeEEEEc----CCCcEEEEEcCCe-EEEEECCCCCcccCCe------
Q 036953 151 EILASGSLDHEVRLWDANTSECIGSC--DFYRPIASIAFH----AEGELLAVASGHK-LYIWPYNNKEEASSPI------ 217 (792)
Q Consensus 151 ~lLaSgS~DgtVrLWDl~tg~~v~t~--~h~s~V~sVafS----pdG~~LasgSdd~-V~IWDlrt~~~~~~~~------ 217 (792)
++|++++.|++|++||+++++++..+ .+...|.+++|+ +++++|++++.++ |++||+++++......
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCC
T ss_pred CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCC
Confidence 99999999999999999999999887 567789999665 4678999998655 9999998876432000
Q ss_pred ---------------EEe--cCCCCeEEEEEccCCCeEEEEEeeCccccCCC-----ceeeecCCCcccCCCCceEEEEe
Q 036953 218 ---------------IVL--KTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS-----SMTRATSPGYLRYPPPAVFVANA 275 (792)
Q Consensus 218 ---------------~~~--~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~-----~~~l~t~sg~~~~p~~~~~l~~~ 275 (792)
... .|...|++++|+ +++.|++++.+..|+.|+. ...+..... .. ..+....
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~~--~~~~~~~ 380 (437)
T 3gre_A 307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSR---FS--DVFIPTQ 380 (437)
T ss_dssp CGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-----CC--CEEEEEE
T ss_pred ccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccc---cC--ceEEEEE
Confidence 001 156679999999 6776666655555554443 222322111 10 1111111
Q ss_pred cCCCEEEEe--------eccCcccCCCceEEEeEECCC--CcEEE
Q 036953 276 QSGDHVSLA--------AELPLMSSLPFLIVPSVSIDD--SRIDL 310 (792)
Q Consensus 276 ssG~~~~l~--------s~l~~l~gh~~~VwdV~~SpD--Gr~lv 310 (792)
.+.....+. ........|...|.+++++++ +.+|+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~ 425 (437)
T 3gre_A 381 VTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLV 425 (437)
T ss_dssp EETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEE
T ss_pred eecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEE
Confidence 111111111 011234459999999999998 77888
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-20 Score=201.93 Aligned_cols=227 Identities=19% Similarity=0.322 Sum_probs=186.3
Q ss_pred CCceEeeecccceeeC-----CCCceeeeEEeeCCCceEeecCCCceeecC------------------------CcEEE
Q 036953 23 RRARNVSRLLAHREIS-----PKTKYVPKRQWVDASKLKTCGPSDSSVRDA------------------------KRGLV 73 (792)
Q Consensus 23 s~~r~V~~l~~~rels-----~~tk~V~s~aWspd~~lla~G~~a~sv~d~------------------------~~~L~ 73 (792)
.+.+++|+....+... .+...|++++|+|+++++++|..+..+..+ +..++
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~ 203 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILS 203 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEE
Confidence 4568899987664332 345579999999999998887655443221 23466
Q ss_pred EEeCCCeEEEEeccCC-----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc----EEEEecCCCCCcEEEE
Q 036953 74 SWVEAESLRHLSAKYC-----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN----CLKVLSGHRRTPWVVR 144 (792)
Q Consensus 74 S~s~d~sIrvWd~~t~-----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk----~v~~L~gH~~~VtsVa 144 (792)
+++.++.+++|+.... .+.+|...+..+.|+|+++++++++.|+.|+|||..+++ .+..+..|...|.+++
T Consensus 204 sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~ 283 (420)
T 4gga_A 204 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283 (420)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEE
T ss_pred EEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeee
Confidence 7888999999998754 467899999999999999999999999999999998765 3567778999999999
Q ss_pred EccCCCCEEEEE--eCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc---CCeEEEEECCCCCcccCCeEE
Q 036953 145 FHPLRSEILASG--SLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS---GHKLYIWPYNNKEEASSPIIV 219 (792)
Q Consensus 145 fSP~dg~lLaSg--S~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS---dd~V~IWDlrt~~~~~~~~~~ 219 (792)
|+|.+..+++++ +.|++|++||+++++++..+.....+.++.|+++++.|++++ ++.|+|||+.+.+... .+
T Consensus 284 ~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~---~l 360 (420)
T 4gga_A 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA---EL 360 (420)
T ss_dssp ECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE---EE
T ss_pred eCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE---EE
Confidence 999777787765 479999999999999999999889999999999999888764 4559999999887543 55
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 220 LKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 220 ~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
.+|...|++++|+|+|++|++++.+..|+.|+.
T Consensus 361 ~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 361 KGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 679999999999999998888887776776653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-20 Score=205.55 Aligned_cols=252 Identities=13% Similarity=0.176 Sum_probs=185.8
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
.+..+++++.|++|++|+..++ .+.+|...|.+++|++++ .|++|+.||+|++||+.+++++..+.+|...|.++
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l 209 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEE
Confidence 3458899999999999998876 467899999999999988 99999999999999999999999999999999999
Q ss_pred EEcc-CCCCEEEEEeCCCeEEEEECCCCcEE-----------------------EEe-ccCCCeeEEEEcCCCcEEEEEc
Q 036953 144 RFHP-LRSEILASGSLDHEVRLWDANTSECI-----------------------GSC-DFYRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 144 afSP-~dg~lLaSgS~DgtVrLWDl~tg~~v-----------------------~t~-~h~s~V~sVafSpdG~~LasgS 198 (792)
+|++ .+++++++++.|++|++||+++++.. ..+ .|...+.++ ++++++|++++
T Consensus 210 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~ 287 (464)
T 3v7d_B 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS 287 (464)
T ss_dssp EEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE
T ss_pred EEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe
Confidence 9985 26789999999999999999986532 222 466677666 57889999998
Q ss_pred -CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----eeeecCCC---cccCCCCc
Q 036953 199 -GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----MTRATSPG---YLRYPPPA 269 (792)
Q Consensus 199 -dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~~l~t~sg---~~~~p~~~ 269 (792)
++.|++||+++.+... ....|...|++++|+|+++.+++++.+..++.++.. ..+..... ...+. +
T Consensus 288 ~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~- 362 (464)
T 3v7d_B 288 YDNTLIVWDVAQMKCLY---ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS-D- 362 (464)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-S-
T ss_pred CCCeEEEEECCCCcEEE---EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc-C-
Confidence 5559999998876432 455688999999999999988888776666555432 22222211 11122 1
Q ss_pred eEEEEecCCCEEEEeecc---Ccc-cCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccc
Q 036953 270 VFVANAQSGDHVSLAAEL---PLM-SSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVP 345 (792)
Q Consensus 270 ~~l~~~ssG~~~~l~s~l---~~l-~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~ 345 (792)
..++.+..+..+.++.-. ... ..+...+..++++++|++++ +++ |.+|.
T Consensus 363 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------------------------~~~-dg~i~ 415 (464)
T 3v7d_B 363 KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV--------------------------SGS-ENQFN 415 (464)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEE--------------------------EEE-TTEEE
T ss_pred CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEE--------------------------Eec-CCeEE
Confidence 233333334444444311 011 12455666778888888888 555 88889
Q ss_pred cccccCCCC
Q 036953 346 SMETFPVIP 354 (792)
Q Consensus 346 p~~~~~~~p 354 (792)
-||...+++
T Consensus 416 iwd~~~g~~ 424 (464)
T 3v7d_B 416 IYNLRSGKL 424 (464)
T ss_dssp EEETTTCCE
T ss_pred EEECCCCcE
Confidence 999877743
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.4e-21 Score=230.58 Aligned_cols=203 Identities=9% Similarity=0.008 Sum_probs=154.8
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecC------------------------CcEEEEEeCCCeEEEEeccCCCc---C
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDA------------------------KRGLVSWVEAESLRHLSAKYCPL---V 92 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~------------------------~~~L~S~s~d~sIrvWd~~t~~L---~ 92 (792)
+...+.+++|+|+++++++|..+..++.+ +..|++++.|++|++||..+++. .
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~ 95 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTV 95 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEE
Confidence 34567777777777776666543332110 22478888999999999986632 2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE-----------EEecCCCCCcEEEEEccCCCCEEEEEeCCCe
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL-----------KVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v-----------~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt 161 (792)
.|...|++++|+|++++|++|+.||+|++||+.+++.. ..+.+|.+.|++++|+|.+..++++++.|++
T Consensus 96 ~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~ 175 (902)
T 2oaj_A 96 FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT 175 (902)
T ss_dssp ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE
T ss_pred cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc
Confidence 36788999999999999999999999999999988753 2346799999999999955679999999999
Q ss_pred EEEEECCCCcEEEEecc-------------------CCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEE--
Q 036953 162 VRLWDANTSECIGSCDF-------------------YRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIV-- 219 (792)
Q Consensus 162 VrLWDl~tg~~v~t~~h-------------------~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~-- 219 (792)
| +||+++++++..+.. ...|.+++|+|+|++|++++.+ .|++||+++++.... ...
T Consensus 176 v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~-r~l~~ 253 (902)
T 2oaj_A 176 L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA-RTVFE 253 (902)
T ss_dssp E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE-ECSSC
T ss_pred E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE-Eeecc
Confidence 9 999999998887753 3679999999999999999954 599999988764320 000
Q ss_pred -e-------------cCCCCeEEEEEcc----CCCeEEEEEee
Q 036953 220 -L-------------KTRRSLRAVHFHP----HAAPFVLTAEV 244 (792)
Q Consensus 220 -~-------------~h~~sVtsVafSP----dG~~LlaS~s~ 244 (792)
. .+...|++++|++ ++..++++++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 0 1345799999964 44467777653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-21 Score=199.01 Aligned_cols=214 Identities=17% Similarity=0.230 Sum_probs=169.2
Q ss_pred CCceEeeecccceeeCC--------CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----
Q 036953 23 RRARNVSRLLAHREISP--------KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---- 90 (792)
Q Consensus 23 s~~r~V~~l~~~rels~--------~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---- 90 (792)
.+.+.+|+....+.+.. ....+..++|+++.. ..+..++++..++.|++|+..+++
T Consensus 43 ~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 110 (366)
T 3k26_A 43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN------------TSHPLLAVAGSRGIIRIINPITMQCIKH 110 (366)
T ss_dssp TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT------------TCCEEEEEEETTCEEEEECTTTCCEEEE
T ss_pred CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC------------CCCCEEEEecCCCEEEEEEchhceEeee
Confidence 44688998875544321 234577888887742 124467778899999999987663
Q ss_pred cCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEe---cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 91 LVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVL---SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 91 L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L---~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
+.+|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+ .+|...|.+++|+| ++++|++++.|+.|++||
T Consensus 111 ~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d 189 (366)
T 3k26_A 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWR 189 (366)
T ss_dssp EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEE
Confidence 568999999999999 9999999999999999999999999888 78999999999999 999999999999999999
Q ss_pred CCCCcEEEEec-----------------------------cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcc---
Q 036953 167 ANTSECIGSCD-----------------------------FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEA--- 213 (792)
Q Consensus 167 l~tg~~v~t~~-----------------------------h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~--- 213 (792)
+++++.+..+. +...|.+++|+ +++|++++ ++.|++||+++.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~ 267 (366)
T 3k26_A 190 INSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDK 267 (366)
T ss_dssp SCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGG
T ss_pred CCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccc
Confidence 99875443322 88899999998 77888888 556999999876531
Q ss_pred --------cCCeEEecCCCCeEEEEEccC--CCeEEEEEeeCccccCC
Q 036953 214 --------SSPIIVLKTRRSLRAVHFHPH--AAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 214 --------~~~~~~~~h~~sVtsVafSPd--G~~LlaS~s~~dLrs~d 251 (792)
........|...|++++|+|+ ++.|++++.+..|..|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd 315 (366)
T 3k26_A 268 IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD 315 (366)
T ss_dssp CCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred cccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence 002234457888999999999 99777776655555443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.1e-21 Score=201.53 Aligned_cols=178 Identities=12% Similarity=0.020 Sum_probs=138.1
Q ss_pred EEEEeCCCeEEEEec---------cCCC-----cCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEec-
Q 036953 72 LVSWVEAESLRHLSA---------KYCP-----LVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTGNCLKVLS- 134 (792)
Q Consensus 72 L~S~s~d~sIrvWd~---------~t~~-----L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tgk~v~~L~- 134 (792)
+++++.|+++++|+. .+.+ ..+|.+.|.+++|+| ++++|++++.|++|++||+.+++++..+.
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 167 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA 167 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence 555566666666644 3443 136668899999999 99999999999999999999999877764
Q ss_pred CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE-EEe-c-cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCC
Q 036953 135 GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI-GSC-D-FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 135 gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v-~t~-~-h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~ 211 (792)
.|...|++++|+| ++.+|++|+.|++|++||+++++.+ ..+ . |...|.+++|+|++.+|++++++.|++||+++.+
T Consensus 168 ~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 168 KSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDV 246 (343)
T ss_dssp CSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSST
T ss_pred CCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCC
Confidence 4566899999999 9999999999999999999999877 555 3 7899999999999999999998889999999887
Q ss_pred cccCCeEEecCCCCe--EEEEEccCCCeEEEEEe-eCccccC
Q 036953 212 EASSPIIVLKTRRSL--RAVHFHPHAAPFVLTAE-VNDLDSS 250 (792)
Q Consensus 212 ~~~~~~~~~~h~~sV--tsVafSPdG~~LlaS~s-~~dLrs~ 250 (792)
..........+...+ .+++|+|+++++++++. +..++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIY 288 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEE
Confidence 543111111122223 46999999998888766 5555544
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-19 Score=185.12 Aligned_cols=235 Identities=11% Similarity=0.103 Sum_probs=180.9
Q ss_pred eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEE
Q 036953 35 REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTL 110 (792)
Q Consensus 35 rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~L 110 (792)
+.+..+...+.+++| +++. .+++++.|+.|++|+.... .+..|...|.+++|+|++++|
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~----------------~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 74 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDS----------------KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELL 74 (313)
T ss_dssp EEECCCSSCEEEEEE-EETT----------------EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred HHhhCCCCCcEEEEe-cCCC----------------EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEE
Confidence 344566677888877 5544 3556678888999988755 345789999999999999999
Q ss_pred EEEECCCeEEEEECCCC---cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEE
Q 036953 111 ASTHGDHTVKIIDCQTG---NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIA 186 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tg---k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVa 186 (792)
++++.|+.|++|++... +.+..+.+|...|.++.|+ ++++++++.|++|++|| .++.+..+ .+...+.+++
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAK 149 (313)
T ss_dssp EEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEE
T ss_pred EEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEE
Confidence 99999999999998654 5677888999999999994 47999999999999999 55666666 5889999999
Q ss_pred EcC-CCcEEEEEcC-CeEEEEECCCCCcccCCeEEec-CCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcc
Q 036953 187 FHA-EGELLAVASG-HKLYIWPYNNKEEASSPIIVLK-TRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYL 263 (792)
Q Consensus 187 fSp-dG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~-h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~ 263 (792)
|++ ++++|++++. +.|++||..... ..... +...|.+++|+|++. +++++.+.
T Consensus 150 ~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg------------------ 205 (313)
T 3odt_A 150 VVSFSENKFLTASADKTIKLWQNDKVI-----KTFSGIHNDVVRHLAVVDDGH-FISCSNDG------------------ 205 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTEEE-----EEECSSCSSCEEEEEEEETTE-EEEEETTS------------------
T ss_pred EccCCCCEEEEEECCCCEEEEecCceE-----EEEeccCcccEEEEEEcCCCe-EEEccCCC------------------
Confidence 998 8899999884 559999933221 22333 788999999999998 66655443
Q ss_pred cCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccc
Q 036953 264 RYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGT 343 (792)
Q Consensus 264 ~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~t 343 (792)
.+.+|+..++..+... .+|...|.+++|+|+|+ ++ +++.|++
T Consensus 206 -----~i~i~d~~~~~~~~~~------~~~~~~i~~~~~~~~~~-l~--------------------------~~~~dg~ 247 (313)
T 3odt_A 206 -----LIKLVDMHTGDVLRTY------EGHESFVYCIKLLPNGD-IV--------------------------SCGEDRT 247 (313)
T ss_dssp -----EEEEEETTTCCEEEEE------ECCSSCEEEEEECTTSC-EE--------------------------EEETTSE
T ss_pred -----eEEEEECCchhhhhhh------hcCCceEEEEEEecCCC-EE--------------------------EEecCCE
Confidence 2444554455443333 34889999999999996 44 4778999
Q ss_pred cccccccCCC
Q 036953 344 VPSMETFPVI 353 (792)
Q Consensus 344 v~p~~~~~~~ 353 (792)
|.-||...++
T Consensus 248 v~iwd~~~~~ 257 (313)
T 3odt_A 248 VRIWSKENGS 257 (313)
T ss_dssp EEEECTTTCC
T ss_pred EEEEECCCCc
Confidence 9999976664
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-20 Score=198.84 Aligned_cols=214 Identities=13% Similarity=0.095 Sum_probs=147.0
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CcEEEE-------ecCCCCCcEEEEEccCCC-CEEEEEeCCCe
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT-GNCLKV-------LSGHRRTPWVVRFHPLRS-EILASGSLDHE 161 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t-gk~v~~-------L~gH~~~VtsVafSP~dg-~lLaSgS~Dgt 161 (792)
+.+|...|.+++|+|++++|++| .|+.|+|||+.+ ++.+.. +.+|...|++++|+| ++ ++|++++.|++
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGT 250 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSC
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCe
Confidence 36899999999999999999998 899999999984 444442 568999999999999 66 99999999999
Q ss_pred EEEEECCCCcE----EEEec-cCC------------CeeEEEEcCCCcEEEEEcCCeEEEEECCC-CCcccCCeEEecCC
Q 036953 162 VRLWDANTSEC----IGSCD-FYR------------PIASIAFHAEGELLAVASGHKLYIWPYNN-KEEASSPIIVLKTR 223 (792)
Q Consensus 162 VrLWDl~tg~~----v~t~~-h~s------------~V~sVafSpdG~~LasgSdd~V~IWDlrt-~~~~~~~~~~~~h~ 223 (792)
|++||+++++. +..+. +.. .|.+++|+|++++|++++++.|++||++. .+... ....|.
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~---~~~~~~ 327 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVE---TYQVHE 327 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSC---CEESCG
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccc---eeeccc
Confidence 99999999876 56664 443 89999999999999999996699999987 44332 222332
Q ss_pred C---------------CeEEEEEccCCCeEEEEEeeCccccCCCc----eeeecCCCccc--CCCCceEEEEecC--CCE
Q 036953 224 R---------------SLRAVHFHPHAAPFVLTAEVNDLDSSDSS----MTRATSPGYLR--YPPPAVFVANAQS--GDH 280 (792)
Q Consensus 224 ~---------------sVtsVafSPdG~~LlaS~s~~dLrs~d~~----~~l~t~sg~~~--~p~~~~~l~~~ss--G~~ 280 (792)
. .+..++|+|++++|++++.+..|+.|+.. ..+........ .......+..... ...
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDE 407 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTC
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccc
Confidence 1 13459999999988776665555544432 12221111000 0000011111000 000
Q ss_pred EEEeeccCcccCCCceEEEeEECCCCcEEEEccc
Q 036953 281 VSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHAS 314 (792)
Q Consensus 281 ~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~ 314 (792)
... . .-++...|+.++|+|+|.+|++...
T Consensus 408 ~~~----~-~~~~~~~i~~~~~~p~~~~la~~~~ 436 (447)
T 3dw8_B 408 ISV----D-SLDFNKKILHTAWHPKENIIAVATT 436 (447)
T ss_dssp EEG----G-GCCTTSCCCEEEECSSSSEEEEECS
T ss_pred ccc----c-ccccCCceeEEEECCCCCEEEEEec
Confidence 111 1 1136778999999999999985544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-20 Score=190.94 Aligned_cols=231 Identities=14% Similarity=0.110 Sum_probs=170.1
Q ss_pred CcCCCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCC-CcEE-EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 036953 90 PLVPPPRSTIAAAFSPD---GRTLASTHGDHTVKIIDCQT-GNCL-KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRL 164 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPD---G~~LaSGS~DGtVrIWDl~t-gk~v-~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrL 164 (792)
.+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ ++.+ ..+.+|...|++++|+| ++++|++++.|++|++
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKM 112 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCcEEE
Confidence 46789999999999998 69999999999999999987 5544 78889999999999999 9999999999999999
Q ss_pred EECCCCcEEEEeccCCCeeEEEE--cCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 165 WDANTSECIGSCDFYRPIASIAF--HAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 165 WDl~tg~~v~t~~h~s~V~sVaf--SpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
||+++++.+....|...|.+++| ++++++|++++ ++.|++||+++.+... .......+.++.+.+ ..++++
T Consensus 113 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 113 WDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM----VLQLPERCYCADVIY--PMAVVA 186 (368)
T ss_dssp EETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE----EEECSSCEEEEEEET--TEEEEE
T ss_pred EEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE----EEecCCCceEEEecC--CeeEEE
Confidence 99999999888889999999999 89999999988 5569999999887432 334445677777764 456666
Q ss_pred EeeCccccCCCc-----eeeec-CCC----cccC----CCCceEEEEecCCCEEEEeec--------cCcccCCCc----
Q 036953 242 AEVNDLDSSDSS-----MTRAT-SPG----YLRY----PPPAVFVANAQSGDHVSLAAE--------LPLMSSLPF---- 295 (792)
Q Consensus 242 ~s~~dLrs~d~~-----~~l~t-~sg----~~~~----p~~~~~l~~~ssG~~~~l~s~--------l~~l~gh~~---- 295 (792)
+.+..+..++.. ..... ... ...+ ......++....+..+.++.- ...+.+|..
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 664444433321 11100 000 0000 001111444444455444431 123344554
Q ss_pred --------eEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 296 --------LIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 296 --------~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
.|.+++|+|+|++|+ +++.|.+|.-||+..++
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~--------------------------s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLA--------------------------TVGSDGRFSFWDKDART 306 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEE--------------------------EEETTSCEEEEETTTTE
T ss_pred ccccccccceEEEEEecCCCEEE--------------------------EEccCCeEEEEECCCCc
Confidence 799999999999999 78889999999976653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-19 Score=193.72 Aligned_cols=262 Identities=13% Similarity=0.114 Sum_probs=191.5
Q ss_pred CCCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCC
Q 036953 21 LRRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVP 93 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~g 93 (792)
...+.+++|+....+.+. .+...+..+.|++++ .+++++.|++|++|+..++ .+.+
T Consensus 139 s~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-----------------~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 139 ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-----------------ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-----------------EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred cCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-----------------EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 355678888876655443 455567777776543 5677788999999998866 4678
Q ss_pred CCCCeEEEEEc--CCCCEEEEEECCCeEEEEECCCCc-----------------------EEEEecCCCCCcEEEEEccC
Q 036953 94 PPRSTIAAAFS--PDGRTLASTHGDHTVKIIDCQTGN-----------------------CLKVLSGHRRTPWVVRFHPL 148 (792)
Q Consensus 94 H~~~V~sLafS--PDG~~LaSGS~DGtVrIWDl~tgk-----------------------~v~~L~gH~~~VtsVafSP~ 148 (792)
|...|.+++|+ +++++|++|+.|++|++||+.+++ .+..+.+|...|.++. +
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~- 278 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G- 278 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-
Confidence 99999999999 478999999999999999998765 2556788999998874 4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 149 RSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 149 dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
+++++++++.|++|++||+++++++..+. |...|.+++|+|++++|++++. +.|++||+++++... ....|...|
T Consensus 279 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v 355 (464)
T 3v7d_B 279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY---TLQGHTALV 355 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE---EEeCCCCcE
Confidence 67899999999999999999999998884 8899999999999999999985 459999999887533 456789999
Q ss_pred EEEEEccCCCeEEEEEeeCccccCCCc-----eeeecCC--CcccCCCCceEEEEecCCCEEEEee---cc---CcccCC
Q 036953 227 RAVHFHPHAAPFVLTAEVNDLDSSDSS-----MTRATSP--GYLRYPPPAVFVANAQSGDHVSLAA---EL---PLMSSL 293 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~dLrs~d~~-----~~l~t~s--g~~~~p~~~~~l~~~ssG~~~~l~s---~l---~~l~gh 293 (792)
.+++|+ ++.+++++.+..++.|+.. ....... ....+.+....++.+.+ ..+.++. +. ..+..|
T Consensus 356 ~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d-g~i~iwd~~~g~~~~~~~~~~ 432 (464)
T 3v7d_B 356 GLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKD 432 (464)
T ss_dssp EEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEET-TEEEEEETTTCCEEESCTTTT
T ss_pred EEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecC-CeEEEEECCCCcEEehhhccC
Confidence 999997 4667776665555544332 2222111 12223333344444443 3444444 11 124568
Q ss_pred CceEEEeEECCCCcEEE
Q 036953 294 PFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 294 ~~~VwdV~~SpDGr~lv 310 (792)
...|++++|+ ++.++
T Consensus 433 ~~~v~~v~~~--~~~l~ 447 (464)
T 3v7d_B 433 ADQIWSVNFK--GKTLV 447 (464)
T ss_dssp CSEEEEEEEE--TTEEE
T ss_pred CCcEEEEEec--CCEEE
Confidence 9999999997 55555
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-20 Score=194.99 Aligned_cols=207 Identities=18% Similarity=0.193 Sum_probs=164.4
Q ss_pred CCCceEeeeccccee--------eCCC-----CceeeeEEee----CCCceEeecCCCceeecCCcEEEEEeCCCeEEEE
Q 036953 22 RRRARNVSRLLAHRE--------ISPK-----TKYVPKRQWV----DASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHL 84 (792)
Q Consensus 22 ~s~~r~V~~l~~~re--------ls~~-----tk~V~s~aWs----pd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvW 84 (792)
..+.+.+|+....+. +..+ ...+..+.|+ +++.. .++++..++.|++|
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------------~l~~~~~dg~i~iw 153 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH---------------RLVATDVKGTTYIW 153 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CE---------------EEEEEETTSCEEEE
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCce---------------EEEEEeCCCcEEEE
Confidence 456788898765442 2333 3667788887 66543 15556677888888
Q ss_pred eccC------CC---------c-------CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC---C---
Q 036953 85 SAKY------CP---------L-------VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG---H--- 136 (792)
Q Consensus 85 d~~t------~~---------L-------~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g---H--- 136 (792)
+... .. + ..|...|.+++|+|++ .|++++.|+.|++||+.+++.+..+.. |
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN 232 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence 8766 32 2 3478899999999999 999999999999999999999999998 9
Q ss_pred CCCcEEEEEccCCCCEEEEEeCC---CeEEEEECCCCcEEEEec--------------cCCCeeEEEEcCCCcEEEEEc-
Q 036953 137 RRTPWVVRFHPLRSEILASGSLD---HEVRLWDANTSECIGSCD--------------FYRPIASIAFHAEGELLAVAS- 198 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~D---gtVrLWDl~tg~~v~t~~--------------h~s~V~sVafSpdG~~LasgS- 198 (792)
...|.+++|+| ++++|++++.| +.|++||+++++++..+. |...|.+++|+|++++|++++
T Consensus 233 ~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 233 SNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp CCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred CCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence 99999999999 89999999999 999999999999888884 789999999999999999998
Q ss_pred CCeEEEEECCCCCcccCCeEEe------cC---------------CCCeEEEEEccCC----------CeEEEEEeeCcc
Q 036953 199 GHKLYIWPYNNKEEASSPIIVL------KT---------------RRSLRAVHFHPHA----------APFVLTAEVNDL 247 (792)
Q Consensus 199 dd~V~IWDlrt~~~~~~~~~~~------~h---------------~~sVtsVafSPdG----------~~LlaS~s~~dL 247 (792)
++.|++||+++.+... ... .| ...|++++|+|++ +.|++++.+..|
T Consensus 312 dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i 388 (397)
T 1sq9_A 312 DGKLRFWDVKTKERIT---TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 388 (397)
T ss_dssp TSEEEEEETTTTEEEE---EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred CCeEEEEEcCCCceeE---EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence 5569999998887543 333 45 8899999999998 556655554444
Q ss_pred c
Q 036953 248 D 248 (792)
Q Consensus 248 r 248 (792)
.
T Consensus 389 ~ 389 (397)
T 1sq9_A 389 R 389 (397)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=216.78 Aligned_cols=245 Identities=7% Similarity=-0.024 Sum_probs=171.2
Q ss_pred CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC--CcCCCCC-----CeEEEEEcCCCCEEEEE
Q 036953 41 TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC--PLVPPPR-----STIAAAFSPDGRTLAST 113 (792)
Q Consensus 41 tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~--~L~gH~~-----~V~sLafSPDG~~LaSG 113 (792)
...+..++|+|++++++++ +.++.+++|+.... .+. |.. .|.+++|||||++|++|
T Consensus 85 ~~~V~~vawSPdG~~LAs~----------------s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg 147 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVL----------------SNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG 147 (588)
T ss_dssp SCCEEEEEECSSSSCEEEE----------------ETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred CCcEEEEEECCCCCEEEEE----------------eCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEE
Confidence 5578888888887765544 66777777774322 234 444 59999999999999999
Q ss_pred ECCCeEEEEECCCCc-------EEEEe----cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---EEEe--c
Q 036953 114 HGDHTVKIIDCQTGN-------CLKVL----SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC---IGSC--D 177 (792)
Q Consensus 114 S~DGtVrIWDl~tgk-------~v~~L----~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~---v~t~--~ 177 (792)
+.||+|+|||+.+++ .+..+ .+|...|.+++|+| ++ +++++.|++|++||+.+++. ..++ .
T Consensus 148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~ 224 (588)
T 2j04_A 148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA 224 (588)
T ss_dssp ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECC
T ss_pred cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeeccc
Confidence 999999999999885 36776 67889999999999 76 88889999999999988773 3445 4
Q ss_pred cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEE--ccCCCeEEEEEeeCc-cccCCCce
Q 036953 178 FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHF--HPHAAPFVLTAEVND-LDSSDSSM 254 (792)
Q Consensus 178 h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVaf--SPdG~~LlaS~s~~d-Lrs~d~~~ 254 (792)
|...|.+++|+ |++|+++++++|++||+...+.. ....+|...|+.+.| +|++..++++..+.. ++..+ .+
T Consensus 225 h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~---~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d-~~ 298 (588)
T 2j04_A 225 SRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSIS---SLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLED-EL 298 (588)
T ss_dssp CSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEE---EEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESS-SE
T ss_pred ccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEE---EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeec-cE
Confidence 67889999999 68999999888999999887642 233479999999999 999987766554443 22222 11
Q ss_pred eeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCC
Q 036953 255 TRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASS 319 (792)
Q Consensus 255 ~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~S 319 (792)
.................+|.. .++ ....+. +.+.|+.+++||||+.+++.......+
T Consensus 299 ~~spd~~l~a~~d~~v~lW~~-~g~------~l~~~~-~~~~I~~va~SPdG~~lA~~~~i~~~~ 355 (588)
T 2j04_A 299 HVTADNIIAPYLEKKFKKWST-IWN------EFNNYE-TTLVIHGISLSPDGYSIAIVYDMERVA 355 (588)
T ss_dssp EEECCCSSHHHHHHHHHHTTT-TTT------SSSSSC-CEEEEEEEEECTTSSEEEEEEEEECSS
T ss_pred EECCCceEEEEcCCEEEEEEC-CCC------ceeeec-cceEEEEEEECCCCCEEEEEEeccCce
Confidence 111100000000011111111 111 123344 478899999999999999555554333
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=198.48 Aligned_cols=245 Identities=15% Similarity=0.205 Sum_probs=181.5
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
.+..++++..|+.|++|+..++ .+.+|...|.+++| +++.|++|+.||+|++||+.+++.+..+.+|...|.++
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l 219 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEE
Confidence 4567888899999999998866 36789999999999 78999999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEE---EEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeE
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECI---GSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPII 218 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v---~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~ 218 (792)
+|++ +++++++.|++|++||+++++.. ..+ .|...|.+++| ++++|++++ ++.|++||+++.+... .
T Consensus 220 ~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~---~ 291 (435)
T 1p22_A 220 RFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR---T 291 (435)
T ss_dssp ECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE---E
T ss_pred EEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE---E
Confidence 9975 69999999999999999987654 333 58889999999 788999988 5569999999887543 4
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----eeeecCCC---cccCCCCceEEEEecCCCEEEEee-----
Q 036953 219 VLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----MTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA----- 285 (792)
Q Consensus 219 ~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s----- 285 (792)
...|...|.++.|+ ++.+++++.+..++.++.. ..+..... ...+ ....++.+..+..+.++.
T Consensus 292 ~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 292 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred EcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 55688999999994 6667777665555544432 22222221 1122 222333334444444443
Q ss_pred ---------ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCC
Q 036953 286 ---------ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIP 354 (792)
Q Consensus 286 ---------~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p 354 (792)
....+.+|...|.++.+ +|+.|+ +++.|++|.-||...+.+
T Consensus 368 ~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~--------------------------s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 368 DPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIV--------------------------SSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp STTSCTTTTEEEEECCCSSCCCCEEE--CSSCEE--------------------------ECCSSSEEEEEC------
T ss_pred CccccccchheeeccCCCCCeEEEEe--CCCEEE--------------------------EEeCCCEEEEEECCCCCC
Confidence 12234567778888887 677777 799999999999877643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=199.00 Aligned_cols=198 Identities=9% Similarity=0.023 Sum_probs=154.7
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCC---eEEEEeccCC------------------------------
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAE---SLRHLSAKYC------------------------------ 89 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~---sIrvWd~~t~------------------------------ 89 (792)
.+.++.|+++++++.++ .++...+|....+. .+..|.....
T Consensus 6 p~~~v~~s~dg~~l~~~------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAI------IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCEEEECSSSSEEEEE------ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred cEEEEEecCCCCEEEEE------eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 45778899999876554 24556677766666 5666653211
Q ss_pred -----------------CcCCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECC--CCcEEEEec--CCCCCcEEEEEcc
Q 036953 90 -----------------PLVPPPRSTIAAAFSPDGRTL-ASTHGDHTVKIIDCQ--TGNCLKVLS--GHRRTPWVVRFHP 147 (792)
Q Consensus 90 -----------------~L~gH~~~V~sLafSPDG~~L-aSGS~DGtVrIWDl~--tgk~v~~L~--gH~~~VtsVafSP 147 (792)
...+|...|.+++|+|++++| ++++.|+.|+|||+. +++.+..+. .|...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 112566689999999999996 889999999999999 888888886 5778999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE----Ee-ccCCCeeEEEEcCC---CcEEEEEcC-CeEEEEECCCCCcccCCeE
Q 036953 148 LRSEILASGSLDHEVRLWDANTSECIG----SC-DFYRPIASIAFHAE---GELLAVASG-HKLYIWPYNNKEEASSPII 218 (792)
Q Consensus 148 ~dg~lLaSgS~DgtVrLWDl~tg~~v~----t~-~h~s~V~sVafSpd---G~~LasgSd-d~V~IWDlrt~~~~~~~~~ 218 (792)
++++|++++.|+.|++||+.+++... .+ .|...|.+++|+|+ +++|++++. +.|++||+++++... ..
T Consensus 160 -~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~ 236 (450)
T 2vdu_B 160 -DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD--KW 236 (450)
T ss_dssp -TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE--EE
T ss_pred -CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee--ee
Confidence 99999999999999999998876543 33 58899999999999 999999984 459999998876432 12
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 219 VLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 219 ~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
...|...|++++|+ ++++|++++.+..|+.|
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vw 267 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAW 267 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSEEEEE
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEE
Confidence 34688999999999 99988777765544443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-19 Score=192.69 Aligned_cols=228 Identities=17% Similarity=0.241 Sum_probs=172.2
Q ss_pred CcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
+..+++++.|++|++|+..++ .+.+|...|.+++|+ ++.|++|+.|++|++||+.+++.+..+.+|...|.++.
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 246 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 246 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEE
Confidence 347788899999999998866 467899999999995 67899999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h 222 (792)
| +++++++++.|+.|++||+++++++..+. |...+.+++| ++.+|++++ ++.|++||+++++... ....|
T Consensus 247 ~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~ 318 (445)
T 2ovr_B 247 Y---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH---TLTGH 318 (445)
T ss_dssp E---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE---EECCC
T ss_pred E---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE---EEcCC
Confidence 9 46889999999999999999999998885 8889999999 788999988 5559999999887543 45567
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCC-----ceeeecCCCc------ccCCCCceEEEEecCCCEEEEeec-----
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDS-----SMTRATSPGY------LRYPPPAVFVANAQSGDHVSLAAE----- 286 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~-----~~~l~t~sg~------~~~p~~~~~l~~~ssG~~~~l~s~----- 286 (792)
...+.++.++ ++.+++++.+..++.++. ...+.....+ ..+. ...++.+..+..+.++.-
T Consensus 319 ~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 319 QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred cccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence 8888888774 666777666555554432 2222221111 1121 123333333344444330
Q ss_pred cCcc-----cCCCceEEEeEECCCCcEEE
Q 036953 287 LPLM-----SSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 287 l~~l-----~gh~~~VwdV~~SpDGr~lv 310 (792)
...+ .+|...|++++|+|+|.+++
T Consensus 395 ~~~~~~~~~~~~~~~v~~~~~s~~~~~la 423 (445)
T 2ovr_B 395 IRNLVTLESGGSGGVVWRIRASNTKLVCA 423 (445)
T ss_dssp EEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred eeeeeccccCCCCceEEEEEecCCEEEEE
Confidence 0111 35789999999999999998
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=191.58 Aligned_cols=221 Identities=17% Similarity=0.170 Sum_probs=168.5
Q ss_pred cCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEec-------------CCCCCcEEEEEccCCCCEEEEE
Q 036953 91 LVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLS-------------GHRRTPWVVRFHPLRSEILASG 156 (792)
Q Consensus 91 L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~-------------gH~~~VtsVafSP~dg~lLaSg 156 (792)
+.+|.+.|++++|+| ++++|++|+.||.|+|||+.+++....+. +|...|.+++|+|+++.+|+++
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 567999999999999 99999999999999999999876544332 5999999999999777899999
Q ss_pred eCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCC---cEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEc
Q 036953 157 SLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEG---ELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFH 232 (792)
Q Consensus 157 S~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG---~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafS 232 (792)
+.|+.|++||+.+++.+..+.+...+.++.|++.+ .+|++++. +.|++||+++++.. .....|...|++++|+
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~v~~~~~~ 195 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS---HILQGHRQEILAVSWS 195 (408)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC---EEECCCCSCEEEEEEC
T ss_pred eCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee---eeecCCCCcEEEEEEC
Confidence 99999999999999999999999999999999854 48888884 45999999887643 3556688999999999
Q ss_pred cCCCeEEEEE-eeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEE
Q 036953 233 PHAAPFVLTA-EVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQ 311 (792)
Q Consensus 233 PdG~~LlaS~-s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~ 311 (792)
|+++++++++ .+..++.++...... .........+.. ..........|...|.+++|+|+|++++
T Consensus 196 ~~~~~ll~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 261 (408)
T 4a11_B 196 PRYDYILATASADSRVKLWDVRRASG-----------CLITLDQHNGKK--SQAVESANTAHNGKVNGLCFTSDGLHLL- 261 (408)
T ss_dssp SSCTTEEEEEETTSCEEEEETTCSSC-----------CSEECCTTTTCS--CCCTTTSSCSCSSCEEEEEECTTSSEEE-
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCCc-----------cccccccccccc--ceeeccccccccCceeEEEEcCCCCEEE-
Confidence 9999755444 444444433221000 000000000000 0011223456899999999999999999
Q ss_pred ccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 312 HASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 312 ~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
+++.|++|.-|+.-.++
T Consensus 262 -------------------------~~~~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 262 -------------------------TVGTDNRMRLWNSSNGE 278 (408)
T ss_dssp -------------------------EEETTSCEEEEETTTCC
T ss_pred -------------------------EecCCCeEEEEECCCCc
Confidence 78889999999976663
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-20 Score=210.95 Aligned_cols=267 Identities=16% Similarity=0.126 Sum_probs=191.5
Q ss_pred ceeeeEEeeCCCceEeecCCCceeecCC-----------cEEEEEeCCCeEEEEeccCCC----cC-CCCCCeEEEEEcC
Q 036953 42 KYVPKRQWVDASKLKTCGPSDSSVRDAK-----------RGLVSWVEAESLRHLSAKYCP----LV-PPPRSTIAAAFSP 105 (792)
Q Consensus 42 k~V~s~aWspd~~lla~G~~a~sv~d~~-----------~~L~S~s~d~sIrvWd~~t~~----L~-gH~~~V~sLafSP 105 (792)
.-+..++|+|||++++++..+..+++++ ..-+....++..+.|+....+ +. .|...|.+++|||
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSP 95 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSP 95 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECS
T ss_pred ccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECC
Confidence 5789999999999999988877774311 123344556666666655332 22 6788899999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEecCCCC-----CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-------EE
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR-----TPWVVRFHPLRSEILASGSLDHEVRLWDANTSE-------CI 173 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~-----~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~-------~v 173 (792)
||++||+++.||+|+|||... ++..+. |.. .|.+++|+| ++++|++|+.||+|++||+.+++ .+
T Consensus 96 dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l 171 (588)
T 2j04_A 96 IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFE 171 (588)
T ss_dssp SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceee
Confidence 999999999999999999644 677777 765 499999999 99999999999999999999875 25
Q ss_pred EEe-----ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEE-ecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 174 GSC-----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIV-LKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 174 ~t~-----~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~-~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
.++ +|...|.+++|+|+| +++++.|+.|++||+...+........ ..|...|.+++|+ |+.+++++ +.
T Consensus 172 ~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~-- 245 (588)
T 2j04_A 172 SSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PG-- 245 (588)
T ss_dssp EEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SS--
T ss_pred eeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CC--
Confidence 554 356799999999999 555555667999999877632111223 3577899999999 56555443 22
Q ss_pred ccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEE--CCCCcEEEEccccccCCCCcccc
Q 036953 248 DSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVS--IDDSRIDLQHASRRASSSNMQIE 325 (792)
Q Consensus 248 rs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~--SpDGr~lv~~~~~~~~Sg~v~~~ 325 (792)
.+.+|....+....+.. +|...|+++.| +|||..++++..... ++-+.
T Consensus 246 ---------------------tIkLWd~~~~~~~~~~~------gh~~~V~~va~~~s~d~~~La~a~edG~---klw~~ 295 (588)
T 2j04_A 246 ---------------------YVHKIDLKNYSISSLKT------GSLENFHIIPLNHEKESTILLMSNKTSY---KVLLE 295 (588)
T ss_dssp ---------------------EEEEEETTTTEEEEEEC------SCCSCCCEEEETTCSSCEEEEECSSCEE---EEEES
T ss_pred ---------------------eEEEEECCCCeEEEEEc------CCCceEEEEEeeeCCCCCEEEEEcCCCC---EEEee
Confidence 46667766544433332 49999999999 999998883322111 12221
Q ss_pred ccccccccCCC--CCcccccccccccc
Q 036953 326 PSASLHLQSDS--NVEQDGTVPSMETF 350 (792)
Q Consensus 326 ~s~~~q~~~~~--sgs~D~tv~p~~~~ 350 (792)
- ..++.+|. .+..|+++.-|...
T Consensus 296 d--~~~~spd~~l~a~~d~~v~lW~~~ 320 (588)
T 2j04_A 296 D--ELHVTADNIIAPYLEKKFKKWSTI 320 (588)
T ss_dssp S--SEEEECCCSSHHHHHHHHHHTTTT
T ss_pred c--cEEECCCceEEEEcCCEEEEEECC
Confidence 1 34456666 33449999999863
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-20 Score=190.52 Aligned_cols=228 Identities=11% Similarity=0.031 Sum_probs=170.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc---EEEEecCCCCCcEEEEEccCCCC-EEEEEeCCCeEEEEEC
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN---CLKVLSGHRRTPWVVRFHPLRSE-ILASGSLDHEVRLWDA 167 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk---~v~~L~gH~~~VtsVafSP~dg~-lLaSgS~DgtVrLWDl 167 (792)
.+|.+.|++++|+|++++|++++.|+.|+|||+.+++ ....+.+|...|.+++|+| +++ +|++++.|+.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEe
Confidence 4799999999999999999999999999999998877 3455568999999999999 899 9999999999999999
Q ss_pred -CCCcEEEEec--cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCC---------CCcccCCeEEecCCCCeEEEEEccC
Q 036953 168 -NTSECIGSCD--FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNN---------KEEASSPIIVLKTRRSLRAVHFHPH 234 (792)
Q Consensus 168 -~tg~~v~t~~--h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt---------~~~~~~~~~~~~h~~sVtsVafSPd 234 (792)
.+++...... |...|.+++|+| +++|++++ ++.|++||+++ .+... ...+...|++++|+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 87 IGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN----NTKVKNKIFTMDTNSS 161 (342)
T ss_dssp SSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS----SSSSCCCEEEEEECSS
T ss_pred ccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee----EEeeCCceEEEEecCC
Confidence 8887755556 899999999999 99999888 55599999986 44332 2347889999999998
Q ss_pred CCeEEEEEee-----Ccccc-CCCceeeec--CCC---cccCCC-CceEEEEecCCCEEEEee-----------ccCccc
Q 036953 235 AAPFVLTAEV-----NDLDS-SDSSMTRAT--SPG---YLRYPP-PAVFVANAQSGDHVSLAA-----------ELPLMS 291 (792)
Q Consensus 235 G~~LlaS~s~-----~dLrs-~d~~~~l~t--~sg---~~~~p~-~~~~l~~~ssG~~~~l~s-----------~l~~l~ 291 (792)
+ +++++.+ |+++. ......... ... ...+.+ ....++.+..+..+.++. ....+.
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 7 6666554 44443 222111111 111 233444 444455555555555422 111334
Q ss_pred CCC---------ceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 292 SLP---------FLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 292 gh~---------~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
.|. ..|.+++|+|+|++|+ +++.|++|.-||...++
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~--------------------------~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLY--------------------------TAGSDGIISCWNLQTRK 284 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEE--------------------------EEETTSCEEEEETTTTE
T ss_pred cccccccccccceeEEEEEEcCCCCEEE--------------------------EecCCceEEEEcCccHh
Confidence 454 4999999999999998 78888999999976653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-19 Score=196.31 Aligned_cols=224 Identities=11% Similarity=0.087 Sum_probs=167.1
Q ss_pred ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEecc--CCC----cC--CCCCCeEEEEEcCCCCEEEEE
Q 036953 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAK--YCP----LV--PPPRSTIAAAFSPDGRTLAST 113 (792)
Q Consensus 42 k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~--t~~----L~--gH~~~V~sLafSPDG~~LaSG 113 (792)
..+..++|+|+++.+ ++++..|+.|++|+.. .+. +. .|...|.+++|+|++++|+++
T Consensus 103 ~~v~~~~~s~d~~~l---------------~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 167 (450)
T 2vdu_B 103 SYIRNLRLTSDESRL---------------IACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA 167 (450)
T ss_dssp CCEEEEEECTTSSEE---------------EEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CceEEEEEcCCCCEE---------------EEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEE
Confidence 357888888887653 1333456677777766 332 22 577889999999999999999
Q ss_pred ECCCeEEEEECCCCcEEE----EecCCCCCcEEEEEccCC---CCEEEEEeCCCeEEEEECCCCcEEEEe--ccCCCeeE
Q 036953 114 HGDHTVKIIDCQTGNCLK----VLSGHRRTPWVVRFHPLR---SEILASGSLDHEVRLWDANTSECIGSC--DFYRPIAS 184 (792)
Q Consensus 114 S~DGtVrIWDl~tgk~v~----~L~gH~~~VtsVafSP~d---g~lLaSgS~DgtVrLWDl~tg~~v~t~--~h~s~V~s 184 (792)
+.|+.|++|++.+++... .+.+|...|++++|+| + +++|++++.|++|++||+++++++..+ .|...|.+
T Consensus 168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSS 246 (450)
T ss_dssp ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEE
T ss_pred eCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEE
Confidence 999999999998876543 7788999999999999 7 889999999999999999999888774 58899999
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEe-----------------------cCCCCeEEEEEccCCCeEEE
Q 036953 185 IAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVL-----------------------KTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 185 VafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~-----------------------~h~~sVtsVafSPdG~~Lla 240 (792)
++|+ ++++|++++ ++.|++||+++++.... .... .....|.+++|+|+++++++
T Consensus 247 ~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 324 (450)
T 2vdu_B 247 ICCG-KDYLLLSAGGDDKIFAWDWKTGKNLST-FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAF 324 (450)
T ss_dssp EEEC-STTEEEEEESSSEEEEEETTTCCEEEE-EECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEE
T ss_pred EEEC-CCCEEEEEeCCCeEEEEECCCCcEeee-ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEE
Confidence 9999 999999998 55699999998875431 1100 23467999999999998887
Q ss_pred EE-eeCccccCCCceeeecCCCcccCCCCceEEEEe--cCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 241 TA-EVNDLDSSDSSMTRATSPGYLRYPPPAVFVANA--QSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 241 S~-s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~--ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
++ .+. .+.+|.. ..+....... .+..+ ..|++++|+|++.+++
T Consensus 325 ~~~~d~-----------------------~i~iw~~~~~~~~~l~~~~---~~~~~-~~v~~~~~~~~~~~v~ 370 (450)
T 2vdu_B 325 FVEATK-----------------------CIIILEMSEKQKGDLALKQ---IITFP-YNVISLSAHNDEFQVT 370 (450)
T ss_dssp EETTCS-----------------------EEEEEEECSSSTTCEEEEE---EEECS-SCEEEEEEETTEEEEE
T ss_pred EECCCC-----------------------eEEEEEeccCCCCceeecc---EeccC-CceEEEEecCCcEEEE
Confidence 77 333 2444444 2221111111 12334 7799999999654444
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-20 Score=223.42 Aligned_cols=211 Identities=13% Similarity=0.053 Sum_probs=164.5
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
..+|...|++++|+|++++||+|+.||+|+|||..+.+....+ .|...|++++|+| +++|++++.|++|++||++++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTC
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCC
Confidence 4578999999999999999999999999999999887766655 4888999999999 569999999999999999999
Q ss_pred cEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCC--------eEEecCCCCeEEEEEccCCCeEEEE
Q 036953 171 ECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSP--------IIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 171 ~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~--------~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
+++..+.+...|++++|+|++++|++++ ++.|++||+++.+..... .....|...|++++|+|++..++++
T Consensus 90 ~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 90 KVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp SEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred cEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence 9999998889999999999999999998 455999999887642100 0124578899999999975444444
Q ss_pred Ee-eCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeec------------cCcccCCCceEEEeEECCCCcE
Q 036953 242 AE-VNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAE------------LPLMSSLPFLIVPSVSIDDSRI 308 (792)
Q Consensus 242 ~s-~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~------------l~~l~gh~~~VwdV~~SpDGr~ 308 (792)
+. +..+ .|+ ...+........ ......|...|++++|+|||++
T Consensus 170 g~~dg~v-lWd-----------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 170 SYEYVTL-TYS-----------------------LVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp ECSSCEE-EEE-----------------------TTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred EeCCCcE-EEE-----------------------CCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 43 3323 332 222211111110 0223456789999999999999
Q ss_pred EEEccccccCCCCccccccccccccCCCCCccccccccccccCCCC
Q 036953 309 DLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIP 354 (792)
Q Consensus 309 lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p 354 (792)
|+ +++.|++|.-||.-.+++
T Consensus 226 la--------------------------sgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 226 II--------------------------TIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EE--------------------------EEETTCCEEEEETTTCCE
T ss_pred EE--------------------------EEECCCeEEEEECCCCcE
Confidence 99 899999999999877754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-18 Score=179.76 Aligned_cols=226 Identities=19% Similarity=0.322 Sum_probs=180.1
Q ss_pred CCceEeeecccceeeC-----CCCceeeeEEeeCCCceEeecCCCceeecC------------------------CcEEE
Q 036953 23 RRARNVSRLLAHREIS-----PKTKYVPKRQWVDASKLKTCGPSDSSVRDA------------------------KRGLV 73 (792)
Q Consensus 23 s~~r~V~~l~~~rels-----~~tk~V~s~aWspd~~lla~G~~a~sv~d~------------------------~~~L~ 73 (792)
.+.+++|+....+.+. .+...+.+++|+++++++++|..+..+..+ +..++
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~ 123 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILS 123 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEE
Confidence 4568999987765443 345579999999999998887665544321 12355
Q ss_pred EEeCCCeEEEEeccCC-----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc----EEEEecCCCCCcEEEE
Q 036953 74 SWVEAESLRHLSAKYC-----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN----CLKVLSGHRRTPWVVR 144 (792)
Q Consensus 74 S~s~d~sIrvWd~~t~-----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk----~v~~L~gH~~~VtsVa 144 (792)
++..++.++.|+.... .+.+|...+..+.|++++++|++++.|+.|+|||+.+++ .......|.+.|..+.
T Consensus 124 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 203 (318)
T 4ggc_A 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203 (318)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEE
T ss_pred EEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEE
Confidence 6677888888877654 356899999999999999999999999999999998765 3455667889999999
Q ss_pred EccCCCCEEE--EEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc---CCeEEEEECCCCCcccCCeEE
Q 036953 145 FHPLRSEILA--SGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS---GHKLYIWPYNNKEEASSPIIV 219 (792)
Q Consensus 145 fSP~dg~lLa--SgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS---dd~V~IWDlrt~~~~~~~~~~ 219 (792)
++|.+..++. +++.+++|++||.+.........+...+..+.|+++++.+++++ ++.|+|||+++++... .+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~---~l 280 (318)
T 4ggc_A 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA---EL 280 (318)
T ss_dssp ECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE---EE
T ss_pred ecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE---EE
Confidence 9995666554 55678999999999999888888999999999999999887764 4559999999887543 55
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 220 LKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 220 ~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
.+|...|++++|+|++++|++++.+..|+.|+
T Consensus 281 ~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 281 KGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 67999999999999999888877766666654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-19 Score=193.06 Aligned_cols=245 Identities=16% Similarity=0.234 Sum_probs=182.7
Q ss_pred CcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
+..+++++.|+.|++|+..++ .+.+|...|.+++|+ ++.|++|+.|++|++||+.+++.+..+.+|...|.++.
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 206 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH 206 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEE
Confidence 567889999999999998866 467899999999997 67999999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h 222 (792)
|++ +.+++++.|++|++||+++++++..+ .|...+.+++| ++++|++++ ++.|++||+++.+... ....|
T Consensus 207 ~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~ 278 (445)
T 2ovr_B 207 LHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH---TLQGH 278 (445)
T ss_dssp EET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE---EECCC
T ss_pred ecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE---EecCC
Confidence 965 78999999999999999999988887 58899999999 788888888 4559999998876432 44568
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCCc-----eeeecCCCccc-CCCCceEEEEecCCCEEEEee-----ccCcc-
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----MTRATSPGYLR-YPPPAVFVANAQSGDHVSLAA-----ELPLM- 290 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~~l~t~sg~~~-~p~~~~~l~~~ssG~~~~l~s-----~l~~l- 290 (792)
...|.+++| ++..+++++.+..++.++.. ..+........ .......++.+..+..+.++. ....+
T Consensus 279 ~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 279 TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp SSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 889999999 78877777765555544322 22221111100 000111222222222333322 01112
Q ss_pred --cCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 291 --SSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 291 --~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
..|...|.++.++ +++++ +++.|++|.-|+...++
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~--------------------------s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVI--------------------------TSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEE--------------------------EEETTSEEEEEETTTCC
T ss_pred cCCCCCCCEEEEEEC--CCEEE--------------------------EEeCCCeEEEEECCCCc
Confidence 2377888888884 57777 78899999999977664
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-18 Score=182.73 Aligned_cols=258 Identities=13% Similarity=0.112 Sum_probs=187.0
Q ss_pred CCCceEeeecccceeeC--CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc---CCCCC
Q 036953 22 RRRARNVSRLLAHREIS--PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL---VPPPR 96 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels--~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L---~gH~~ 96 (792)
..+.+.+|+....+.+. .....+..++|+++++.+ +++...++.|++|+..++++ ..+..
T Consensus 10 ~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l---------------~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKV---------------YVANAHSNDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEE---------------EEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEE---------------EEECCCCCeEEEEECCCCeEEEEEECCC
Confidence 45678899887665543 122346777888876533 12334567788888766532 22334
Q ss_pred CeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE-EEEeCCCeEEEEECCCCcEEE
Q 036953 97 STIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL-ASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~v~ 174 (792)
.+.+++|+|++++|+.++ .|+.|++||+.+++.+..+..| ..+.+++|+| +++.+ ++++.|+.|++||+.+++.+.
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 899999999999886555 6799999999999988888755 4689999999 77766 788889999999999999998
Q ss_pred EeccCCCeeEEEEcCCCcEEE-EEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 175 SCDFYRPIASIAFHAEGELLA-VAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 175 t~~h~s~V~sVafSpdG~~La-sgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
.+.....+.+++|+|++++|+ +++ ++.|++||+++.+.. ....+...+.+++|+|+++++++++...
T Consensus 153 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~~g~~l~~~~~~~------- 221 (391)
T 1l0q_A 153 TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI----DTVKVEAAPSGIAVNPEGTKAYVTNVDK------- 221 (391)
T ss_dssp EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----EEEECSSEEEEEEECTTSSEEEEEEECS-------
T ss_pred EEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE----EEEecCCCccceEECCCCCEEEEEecCc-------
Confidence 888778889999999999875 445 456999999887643 3444667899999999999888776411
Q ss_pred ceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccc
Q 036953 253 SMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHL 332 (792)
Q Consensus 253 ~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~ 332 (792)
....+.+|+...+..+..... + ..+..+.++|||+.+++
T Consensus 222 -------------~~~~v~~~d~~~~~~~~~~~~------~-~~~~~~~~s~dg~~l~~--------------------- 260 (391)
T 1l0q_A 222 -------------YFNTVSMIDTGTNKITARIPV------G-PDPAGIAVTPDGKKVYV--------------------- 260 (391)
T ss_dssp -------------SCCEEEEEETTTTEEEEEEEC------C-SSEEEEEECTTSSEEEE---------------------
T ss_pred -------------CCCcEEEEECCCCeEEEEEec------C-CCccEEEEccCCCEEEE---------------------
Confidence 012345555555444333321 2 24688999999987740
Q ss_pred cCCCCCccccccccccccCC
Q 036953 333 QSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 333 ~~~~sgs~D~tv~p~~~~~~ 352 (792)
+++.|.+|.-||...+
T Consensus 261 ----s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 261 ----ALSFXNTVSVIDTATN 276 (391)
T ss_dssp ----EETTTTEEEEEETTTT
T ss_pred ----EcCCCCEEEEEECCCC
Confidence 4567888888886555
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-19 Score=194.51 Aligned_cols=214 Identities=16% Similarity=0.186 Sum_probs=161.3
Q ss_pred CCCceEeeecccc-------------eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC
Q 036953 22 RRRARNVSRLLAH-------------REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY 88 (792)
Q Consensus 22 ~s~~r~V~~l~~~-------------rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t 88 (792)
..+.+.+|+.... ..+..+...+..+.|++++. ..++++..++.|++|+...
T Consensus 149 ~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~---------------~~l~s~~~dg~i~vwd~~~ 213 (430)
T 2xyi_A 149 PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN---------------GYLLSASDDHTICLWDINA 213 (430)
T ss_dssp SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST---------------TEEEEECTTSCEEEEETTS
T ss_pred CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC---------------CeEEEEeCCCeEEEEeCCC
Confidence 3456888887541 11223444556666666543 2566677889999999875
Q ss_pred C-----------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC---cEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 89 C-----------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG---NCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 89 ~-----------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg---k~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
. .+.+|...|.+++|+| ++..|++++.|+.|++||+.++ +.+..+..|...|++++|+|++..++
T Consensus 214 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l 293 (430)
T 2xyi_A 214 TPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 293 (430)
T ss_dssp CCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred CCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEE
Confidence 2 3458999999999999 7889999999999999999987 57788889999999999999444589
Q ss_pred EEEeCCCeEEEEECCC-CcEEEEe-ccCCCeeEEEEcCCCc-EEEEEc-CCeEEEEECCCCCcc-----------cCCeE
Q 036953 154 ASGSLDHEVRLWDANT-SECIGSC-DFYRPIASIAFHAEGE-LLAVAS-GHKLYIWPYNNKEEA-----------SSPII 218 (792)
Q Consensus 154 aSgS~DgtVrLWDl~t-g~~v~t~-~h~s~V~sVafSpdG~-~LasgS-dd~V~IWDlrt~~~~-----------~~~~~ 218 (792)
++++.|++|++||+++ ++++..+ .|...|.+++|+|+++ +|++++ ++.|+|||++..... .....
T Consensus 294 ~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (430)
T 2xyi_A 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 373 (430)
T ss_dssp EEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE
T ss_pred EEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE
Confidence 9999999999999998 5666666 4889999999999995 677777 556999999873321 11123
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEe-eCccccC
Q 036953 219 VLKTRRSLRAVHFHPHAAPFVLTAE-VNDLDSS 250 (792)
Q Consensus 219 ~~~h~~sVtsVafSPdG~~LlaS~s-~~dLrs~ 250 (792)
...|...|++++|+|+++.++++++ +..|..|
T Consensus 374 ~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 374 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406 (430)
T ss_dssp CCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred cCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence 3457888999999999995555444 4444443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-18 Score=183.66 Aligned_cols=251 Identities=9% Similarity=0.038 Sum_probs=180.7
Q ss_pred CCceEeeecccceeeC--------CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----C
Q 036953 23 RRARNVSRLLAHREIS--------PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----P 90 (792)
Q Consensus 23 s~~r~V~~l~~~rels--------~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~ 90 (792)
.+...+|+....+... .+...+..++|++++. .++++..++.|++|+..++ .
T Consensus 143 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~~~s~~~d~~v~~~d~~~~~~~~~ 206 (433)
T 3bws_A 143 DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE----------------LWVSQMQANAVHVFDLKTLAYKAT 206 (433)
T ss_dssp SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE----------------EEEEEGGGTEEEEEETTTCCEEEE
T ss_pred CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE----------------EEEEECCCCEEEEEECCCceEEEE
Confidence 3446777665544332 1223455566655544 3445556788889988765 3
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe--------CCCe
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS--------LDHE 161 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS--------~Dgt 161 (792)
+..|...+.+++|+|+++++++++ .|+.|++||+.+++.+..+..+ ..+.+++|+| +++++++++ .|+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~ 284 (433)
T 3bws_A 207 VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSK-DGKELYIAQFSASNQESGGGR 284 (433)
T ss_dssp EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECT-TSSEEEEEEEESCTTCSCCEE
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcC-CCCEEEEEECCCCccccCCCe
Confidence 457888999999999999886555 7999999999999988888754 4599999999 888888887 5889
Q ss_pred EEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEE-c-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 162 VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVA-S-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 162 VrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~Lasg-S-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
|++||+++++.+..+.+...+.+++|+|+++.++++ + ++.|++||+++++.. ....+...+.+++|+|+++.++
T Consensus 285 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~~~~~~~~~~~s~dg~~l~ 360 (433)
T 3bws_A 285 LGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIPVFDKPNTIALSPDGKYLY 360 (433)
T ss_dssp EEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEECSSSEEEEEECTTSSEEE
T ss_pred EEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE----EEecCCCCCCeEEEcCCCCEEE
Confidence 999999999988888777889999999999765444 5 566999999877643 2345677899999999999888
Q ss_pred EEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 240 LTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 240 aS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+++...+.... ... +.......+.+|+..++..+.... ....+..++|+|||++++
T Consensus 361 ~~~~~~~~~~~--~~~------~~g~~dg~v~~~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~ 416 (433)
T 3bws_A 361 VSCRGPNHPTE--GYL------KKGLVLGKVYVIDTTTDTVKEFWE-------AGNQPTGLDVSPDNRYLV 416 (433)
T ss_dssp EEECCCCCTTT--CTT------SCCSSCCEEEEEETTTTEEEEEEE-------CSSSEEEEEECTTSCEEE
T ss_pred EEecCCCcccc--ccc------cccccceEEEEEECCCCcEEEEec-------CCCCCceEEEcCCCCEEE
Confidence 77753321100 000 001112356777766666554443 234689999999999987
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-19 Score=209.82 Aligned_cols=211 Identities=21% Similarity=0.239 Sum_probs=167.1
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--CCcEEEEecCCCCCcEEEEEccCC--CCEEEEEeCCCeEEEE
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ--TGNCLKVLSGHRRTPWVVRFHPLR--SEILASGSLDHEVRLW 165 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~--tgk~v~~L~gH~~~VtsVafSP~d--g~lLaSgS~DgtVrLW 165 (792)
.+.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|.+.|++++|++ + +++|++|+.||+|++|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEE
Confidence 357899999999999999999999999999999997 5567888999999999999998 5 8999999999999999
Q ss_pred ECCCCc--EEEEe-ccCCCeeEEEEcCC--CcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEcc------
Q 036953 166 DANTSE--CIGSC-DFYRPIASIAFHAE--GELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP------ 233 (792)
Q Consensus 166 Dl~tg~--~v~t~-~h~s~V~sVafSpd--G~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP------ 233 (792)
|+.+++ .+..+ .|...|.+++|+|+ +++|++++ ++.|++||++...... ......|...|++++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~-~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC-CEEEECCSSCEEEEEECCCC----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc-eeEeecCCCceEEEEecCcccccc
Confidence 999986 44444 58899999999999 99999998 5569999998875443 445667889999999999
Q ss_pred -------CCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCC-
Q 036953 234 -------HAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDD- 305 (792)
Q Consensus 234 -------dG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpD- 305 (792)
++..+++++.+..|+ +|+...+..... ....+.+|...|.+++|+|+
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~-----------------------iwd~~~~~~~~~--~~~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVK-----------------------IWKYNSDAQTYV--LESTLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp -----CGGGCCEEEEETTSCEE-----------------------EEEEETTTTEEE--EEEEECCCSSCEEEEEECCCC
T ss_pred cccccCCCCCEEEEEECCCeEE-----------------------EEeccCCcccce--eeeeecCCCCcEEEEEeccCC
Confidence 477777666554333 333333321100 01124568999999999999
Q ss_pred --CcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 306 --SRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 306 --Gr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
|++++ +++.|++|.-|+...++
T Consensus 217 ~~~~~l~--------------------------s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 217 LLRSYLA--------------------------SVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp SSSEEEE--------------------------EEESSSCEEEEEESSSS
T ss_pred CCCCEEE--------------------------EEecCCEEEEecCCCCC
Confidence 89999 77788888888877763
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-19 Score=188.66 Aligned_cols=179 Identities=13% Similarity=0.070 Sum_probs=139.9
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCCcCC--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---------CCcEEEEec-
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCPLVP--PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ---------TGNCLKVLS- 134 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~L~g--H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~---------tgk~v~~L~- 134 (792)
..+..+++++.|++|++|+..+++... ....|.++.|+|+ +++++.|++|++|+.. +++.+..+.
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 122 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV 122 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence 345678899999999999998664211 1355777788887 9999999999999665 555455554
Q ss_pred CCCCCcEEEEEcc-CCCCEEEEEeCCCeEEEEECCCCcEEEEe--ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCC
Q 036953 135 GHRRTPWVVRFHP-LRSEILASGSLDHEVRLWDANTSECIGSC--DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNK 210 (792)
Q Consensus 135 gH~~~VtsVafSP-~dg~lLaSgS~DgtVrLWDl~tg~~v~t~--~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~ 210 (792)
+|.+.|.+++|+| .+++++++++.|++|++||+++++++..+ .+...+.+++|+|++.+|++|+ ++.|++||++++
T Consensus 123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 6778999999998 35689999999999999999999987766 3556799999999999999988 555999999988
Q ss_pred CcccCCeEEec-CCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 211 EEASSPIIVLK-TRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 211 ~~~~~~~~~~~-h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
+... ..... |...|++++|+|++.+|++++. ..++.|+
T Consensus 203 ~~~~--~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd 241 (343)
T 3lrv_A 203 DQAS--SRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFD 241 (343)
T ss_dssp TSCC--EECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEE
T ss_pred CCCc--cEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEE
Confidence 7541 23444 8899999999999997777663 3444443
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-19 Score=190.39 Aligned_cols=205 Identities=12% Similarity=0.084 Sum_probs=143.2
Q ss_pred CCCceeeeEEeeCCCceEeecCCCce-eec-----------------------CCcEEEEEeCCCeEEEEeccCCCc---
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSS-VRD-----------------------AKRGLVSWVEAESLRHLSAKYCPL--- 91 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~s-v~d-----------------------~~~~L~S~s~d~sIrvWd~~t~~L--- 91 (792)
.+...+.+++|+|+++++++|..... +++ .+..++++..+++|++||..+++.
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR 96 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence 34456777777777777666543321 111 111223445567888888765531
Q ss_pred CCCCCCeEEEEEcCCC-----------------------------------CEEEE--EECCCeEEEEECCCCc------
Q 036953 92 VPPPRSTIAAAFSPDG-----------------------------------RTLAS--THGDHTVKIIDCQTGN------ 128 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG-----------------------------------~~LaS--GS~DGtVrIWDl~tgk------ 128 (792)
..|...|.+++|+++. +.++. |+.||.|++||+.+++
T Consensus 97 ~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~ 176 (355)
T 3vu4_A 97 IKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQD 176 (355)
T ss_dssp EECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC--------
T ss_pred EECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCcccccc
Confidence 2355677777776542 34444 5778999999998765
Q ss_pred ----------EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEec---cCCCeeEEEEcCCCcEE
Q 036953 129 ----------CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE-VRLWDANTSECIGSCD---FYRPIASIAFHAEGELL 194 (792)
Q Consensus 129 ----------~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt-VrLWDl~tg~~v~t~~---h~s~V~sVafSpdG~~L 194 (792)
++..+.+|.+.|++++|+| ++++|++++.|++ |++||+++++++..+. |...|.+++|+|++++|
T Consensus 177 ~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l 255 (355)
T 3vu4_A 177 QGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKL 255 (355)
T ss_dssp ----------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEE
T ss_pred ccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEE
Confidence 2678899999999999999 9999999999998 9999999999999986 88999999999999999
Q ss_pred EEEcC-CeEEEEECCCCCcccCCeEE-------------------e--cCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 195 AVASG-HKLYIWPYNNKEEASSPIIV-------------------L--KTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 195 asgSd-d~V~IWDlrt~~~~~~~~~~-------------------~--~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
++++. +.|+|||++...... .... . ........++|+++++.+++.+.+.
T Consensus 256 ~s~s~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg 327 (355)
T 3vu4_A 256 AVVSDKWTLHVFEIFNDQDNK-RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTR 327 (355)
T ss_dssp EEEETTCEEEEEESSCCSCCC-SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred EEEECCCEEEEEEccCCCCcc-cccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence 99985 559999997654221 0000 0 0122236688999998777766543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-18 Score=185.30 Aligned_cols=237 Identities=11% Similarity=0.037 Sum_probs=178.9
Q ss_pred EEEEEeCCCeEEEEeccCCC---------cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcE
Q 036953 71 GLVSWVEAESLRHLSAKYCP---------LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~---------L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vt 141 (792)
.+++...++.|++|+..+++ +.+|...|.+++|+++++.+++++.|+.|++||+.+++.+..+..|...+.
T Consensus 136 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 136 LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 34444556778888887552 347888999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCEE-EEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc---------CCeEEEEECCCCC
Q 036953 142 VVRFHPLRSEIL-ASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS---------GHKLYIWPYNNKE 211 (792)
Q Consensus 142 sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS---------dd~V~IWDlrt~~ 211 (792)
+++|+| +++++ ++++.|++|++||+++++.+..+.....+.+++|+|++++|++++ ++.|++||+++++
T Consensus 216 ~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~ 294 (433)
T 3bws_A 216 ILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK 294 (433)
T ss_dssp EEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE
T ss_pred EEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc
Confidence 999999 77766 555589999999999999998888777899999999999988877 3459999998876
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCccc
Q 036953 212 EASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMS 291 (792)
Q Consensus 212 ~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~ 291 (792)
... ...+...+..++|+|+++.+++++... ..+.+|+..++.......
T Consensus 295 ~~~----~~~~~~~~~~~~~~~~g~~l~~~~~~~----------------------~~v~v~d~~~~~~~~~~~------ 342 (433)
T 3bws_A 295 LID----TIGPPGNKRHIVSGNTENKIYVSDMCC----------------------SKIEVYDLKEKKVQKSIP------ 342 (433)
T ss_dssp EEE----EEEEEECEEEEEECSSTTEEEEEETTT----------------------TEEEEEETTTTEEEEEEE------
T ss_pred EEe----eccCCCCcceEEECCCCCEEEEEecCC----------------------CEEEEEECCCCcEEEEec------
Confidence 432 334455789999999999887776421 234455544444433322
Q ss_pred CCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 292 SLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 292 gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+...+..++++|||+++++.....+.. ....-.+|+.|.+|.-||...+
T Consensus 343 -~~~~~~~~~~s~dg~~l~~~~~~~~~~-----------~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 343 -VFDKPNTIALSPDGKYLYVSCRGPNHP-----------TEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp -CSSSEEEEEECTTSSEEEEEECCCCCT-----------TTCTTSCCSSCCEEEEEETTTT
T ss_pred -CCCCCCeEEEcCCCCEEEEEecCCCcc-----------ccccccccccceEEEEEECCCC
Confidence 456688999999999887433222111 0111226788999999986555
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-18 Score=180.50 Aligned_cols=205 Identities=13% Similarity=0.202 Sum_probs=159.1
Q ss_pred EEEEEeCCCeEEEEeccCCCc---CCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 036953 71 GLVSWVEAESLRHLSAKYCPL---VPPPRSTIAAAFSPDGRTL-ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH 146 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L---~gH~~~V~sLafSPDG~~L-aSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafS 146 (792)
.++++..++.|++|+..++++ ..+...+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~s 82 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS 82 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEEC
Confidence 456677899999999887642 1233459999999999987 566689999999999999998888655 89999999
Q ss_pred cCCCCEEE-EEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEE-EEEc-CCeEEEEECCCCCcccCCeEEecCC
Q 036953 147 PLRSEILA-SGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELL-AVAS-GHKLYIWPYNNKEEASSPIIVLKTR 223 (792)
Q Consensus 147 P~dg~lLa-SgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~L-asgS-dd~V~IWDlrt~~~~~~~~~~~~h~ 223 (792)
| ++++|+ +++.|++|++||+.+++.+..+.+...+.+++|+|++++| ++++ ++.|++||+++++... .....
T Consensus 83 p-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~----~~~~~ 157 (391)
T 1l0q_A 83 P-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN----TVSVG 157 (391)
T ss_dssp T-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EEECC
T ss_pred C-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE----EEecC
Confidence 9 777664 5557799999999999999888888889999999999977 5665 5669999998876432 33445
Q ss_pred CCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEEC
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSI 303 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~S 303 (792)
..+..++|+|+++.+++++... ..+.+|+...+....... +...+..++|+
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~----------------------~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~~ 208 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDS----------------------MSISVIDTVTNSVIDTVK-------VEAAPSGIAVN 208 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTT----------------------TEEEEEETTTTEEEEEEE-------CSSEEEEEEEC
T ss_pred CCcceEEECCCCCEEEEEeCCC----------------------CEEEEEECCCCeEEEEEe-------cCCCccceEEC
Confidence 6689999999999887665421 234555555554443332 45578899999
Q ss_pred CCCcEEE
Q 036953 304 DDSRIDL 310 (792)
Q Consensus 304 pDGr~lv 310 (792)
|+|++++
T Consensus 209 ~~g~~l~ 215 (391)
T 1l0q_A 209 PEGTKAY 215 (391)
T ss_dssp TTSSEEE
T ss_pred CCCCEEE
Confidence 9999888
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=190.21 Aligned_cols=203 Identities=11% Similarity=0.040 Sum_probs=144.7
Q ss_pred eeeeEEeeCC----CceEeecCCCceeec-CCcEEEEEe---CCCeEEEEeccC-CC----cCCCCCCeEEEEEcC---C
Q 036953 43 YVPKRQWVDA----SKLKTCGPSDSSVRD-AKRGLVSWV---EAESLRHLSAKY-CP----LVPPPRSTIAAAFSP---D 106 (792)
Q Consensus 43 ~V~s~aWspd----~~lla~G~~a~sv~d-~~~~L~S~s---~d~sIrvWd~~t-~~----L~gH~~~V~sLafSP---D 106 (792)
.+..++++|+ +.++.++.....++. .+.+++..+ .++.|++|++.. ++ +.+|...++.++|++ +
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~ 192 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM 192 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence 5667777888 666555443222222 345555554 389999999843 43 457888899999999 7
Q ss_pred CCEEEEEECCCeEEEEECCCCcEEEEecCCC---CCcEEEEEccCCCCEE------------EEEeCCCeEEEEECCCCc
Q 036953 107 GRTLASTHGDHTVKIIDCQTGNCLKVLSGHR---RTPWVVRFHPLRSEIL------------ASGSLDHEVRLWDANTSE 171 (792)
Q Consensus 107 G~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~---~~VtsVafSP~dg~lL------------aSgS~DgtVrLWDl~tg~ 171 (792)
+..|++++.|++|+|||+.+++++++|.+|. ..+.+++|+| ++.++ ++|+.|++|++||..+++
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 7999999999999999999999999998754 4677889999 88776 678899999999999999
Q ss_pred EEEEe------ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeE-EEEEccCCCeEEEEEe
Q 036953 172 CIGSC------DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLR-AVHFHPHAAPFVLTAE 243 (792)
Q Consensus 172 ~v~t~------~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVt-sVafSPdG~~LlaS~s 243 (792)
.+..+ .|...+.+..+ ++.++++++ |++|+|||+.+++... .+.+|...+. .++|+|||++|++++.
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~---tL~gH~~~vvs~vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTA---LLPPVSDQHWSFVKWSGTDSHLLAGQK 346 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEE---EECCC--CCCCEEEECSSSSEEEEECT
T ss_pred EEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEE---EecCCCCCeEEEEEECCCCCEEEEEEC
Confidence 87765 23334443333 478899988 5569999999988543 3445666544 6899999998877776
Q ss_pred eCccccCC
Q 036953 244 VNDLDSSD 251 (792)
Q Consensus 244 ~~dLrs~d 251 (792)
+..|+.|+
T Consensus 347 D~TIklWd 354 (356)
T 2w18_A 347 DGNIFVYH 354 (356)
T ss_dssp TSCEEEEE
T ss_pred CCcEEEec
Confidence 77666654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=189.08 Aligned_cols=211 Identities=12% Similarity=0.060 Sum_probs=146.9
Q ss_pred CCCceEeeeccccee--------eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----
Q 036953 22 RRRARNVSRLLAHRE--------ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---- 89 (792)
Q Consensus 22 ~s~~r~V~~l~~~re--------ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---- 89 (792)
..+.+++|+...... +..++..|+.++|+|..... ....+..|++++.|+++++||....
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~--------~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSAD--------NRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTT--------CSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccc--------cCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 456788998766533 23467789999998842100 0113457888899999999998654
Q ss_pred CcCCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEE-------------------------ecCCCCCcEEE
Q 036953 90 PLVPPPRSTIAAAFSPDG-RTLASTHGDHTVKIIDCQTGNCLKV-------------------------LSGHRRTPWVV 143 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG-~~LaSGS~DGtVrIWDl~tgk~v~~-------------------------L~gH~~~VtsV 143 (792)
.+.+|...|.+++|+|++ .+|++++.|++|++||+.+++.... ..+|...|.++
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v 260 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV 260 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence 356899999999999976 4899999999999999987754322 23678889999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCC------------------CeeEEEEcC--CCcEEEEEc-CCe
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYR------------------PIASIAFHA--EGELLAVAS-GHK 201 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s------------------~V~sVafSp--dG~~LasgS-dd~ 201 (792)
.|++.+++.+++++.|+++++||+..++....+. +.. ......|++ ++.++++++ ++.
T Consensus 261 ~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~ 340 (393)
T 4gq1_A 261 RWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL 340 (393)
T ss_dssp EEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE
T ss_pred eeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCE
Confidence 9984489999999999999999998766544331 211 122234443 334566666 556
Q ss_pred EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 202 LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 202 V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
|++||+.+++.. .....|..+|++++|+|||+.|++++.
T Consensus 341 V~lwd~~~~~~~---~~~~~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 341 IQLINTYEKDSN---SIPIQLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp EEEEETTCTTCC---EEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred EEEEECCCCcEE---EEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 999999888754 355678889999999999997766553
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-17 Score=177.89 Aligned_cols=198 Identities=15% Similarity=0.115 Sum_probs=155.7
Q ss_pred CeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCE
Q 036953 79 ESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGDH---TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEI 152 (792)
Q Consensus 79 ~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~DG---tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~l 152 (792)
+.|++|+.... .+.+|...|.+++|+|||++|++++.|+ .|++||+.+++.. .+..|.+.+.+++|+| +++.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp-dg~~ 236 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP-DGSK 236 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT-TSSE
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC-CCCE
Confidence 78999998754 3567889999999999999999999885 9999999998865 5667888999999999 8887
Q ss_pred EE-EEeCCCe--EEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC-C---eEEEEECCCCCcccCCeEEecCCCC
Q 036953 153 LA-SGSLDHE--VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG-H---KLYIWPYNNKEEASSPIIVLKTRRS 225 (792)
Q Consensus 153 La-SgS~Dgt--VrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd-d---~V~IWDlrt~~~~~~~~~~~~h~~s 225 (792)
|+ +++.|+. |++||+.+++......+...+.+++|+|||++|+++++ + .|++||+.+++. .....+...
T Consensus 237 la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~----~~l~~~~~~ 312 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP----QRITWEGSQ 312 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC----EECCCSSSE
T ss_pred EEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE----EEEecCCCc
Confidence 77 6666654 99999999887655567888999999999999888774 3 488889987653 223445677
Q ss_pred eEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCC
Q 036953 226 LRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDD 305 (792)
Q Consensus 226 VtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpD 305 (792)
+..++|+|+|++|++++.... ...+++|+..++....+.. +. .+..+.|+||
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g--------------------~~~i~~~d~~~~~~~~l~~-------~~-~~~~~~~spd 364 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGG--------------------QQHIAKQDLATGGVQVLSS-------TF-LDETPSLAPN 364 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSS--------------------CEEEEEEETTTCCEEECCC-------SS-SCEEEEECTT
T ss_pred ccCeEECCCCCEEEEEECcCC--------------------ceEEEEEECCCCCEEEecC-------CC-CcCCeEEcCC
Confidence 899999999998887775420 1235666666666543322 32 7889999999
Q ss_pred CcEEE
Q 036953 306 SRIDL 310 (792)
Q Consensus 306 Gr~lv 310 (792)
|+.|+
T Consensus 365 g~~l~ 369 (415)
T 2hqs_A 365 GTMVI 369 (415)
T ss_dssp SSEEE
T ss_pred CCEEE
Confidence 99988
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-17 Score=179.09 Aligned_cols=222 Identities=18% Similarity=0.319 Sum_probs=165.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
+|...|.+++| ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++| ++++|++|+.|++|++||+.+++.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcE
Confidence 56778999887 7999999999999999999999999999999999999998 468999999999999999999999
Q ss_pred EEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 173 IGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 173 v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
+..+ .|...|.+++|++ .+|++++ ++.|++||+++.+..........|...|++++| +++.+++++.+..+..+
T Consensus 206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW 281 (435)
T ss_dssp EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence 8888 4888999999974 5888887 555999999887754322355678899999999 67777777765544443
Q ss_pred C-----CceeeecCCCc---ccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEEEcccccc
Q 036953 251 D-----SSMTRATSPGY---LRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRA 317 (792)
Q Consensus 251 d-----~~~~l~t~sg~---~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~ 317 (792)
+ ....+....+. ..+. + ..++.+..+..+.+.. ....+.+|...|.++.+ +|++++
T Consensus 282 d~~~~~~~~~~~~~~~~v~~~~~~-~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~------- 350 (435)
T 1p22_A 282 NTSTCEFVRTLNGHKRGIACLQYR-D-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIV------- 350 (435)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEE-T-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEE-------
T ss_pred ECCcCcEEEEEcCCCCcEEEEEeC-C-CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEE-------
Confidence 3 22233322221 1111 1 1222323333333333 12245568888999888 788888
Q ss_pred CCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 318 SSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 318 ~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
+++.|++|.-||...+.
T Consensus 351 -------------------sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 351 -------------------SGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp -------------------EEETTSCEEEEEHHHHT
T ss_pred -------------------EEeCCCcEEEEECCCCC
Confidence 78899999999976653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-17 Score=173.19 Aligned_cols=203 Identities=13% Similarity=0.104 Sum_probs=143.6
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE-EEEeCCCeEEEEECCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL-ASGSLDHEVRLWDANT 169 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL-aSgS~DgtVrLWDl~t 169 (792)
+..|...|++++|+|||++|++|+.|+ ++|||+.+++....... ..+..+.+.+ +++.+ ++++.|++|++||+.+
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLH-RTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECT-TSSEEEEECSSTTEEEEEETTT
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcC-CCCEEEEEECCccEEEEEECCC
Confidence 467899999999999999999988775 78999988776655432 2578888988 56665 6677889999999999
Q ss_pred CcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe----------------------------------------EEEEECCC
Q 036953 170 SECIGSCDFYRPIASIAFHAEGELLAVASGHK----------------------------------------LYIWPYNN 209 (792)
Q Consensus 170 g~~v~t~~h~s~V~sVafSpdG~~LasgSdd~----------------------------------------V~IWDlrt 209 (792)
++++..+.+...|.+++|+++. ++++.++. |++||+++
T Consensus 91 ~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~ 168 (355)
T 3vu4_A 91 KQDVSRIKVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQS 168 (355)
T ss_dssp TEEEEEEECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC
T ss_pred CcEEEEEECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCC
Confidence 9999999888899999998763 22233333 55555544
Q ss_pred CCcc------------cC-CeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEec
Q 036953 210 KEEA------------SS-PIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQ 276 (792)
Q Consensus 210 ~~~~------------~~-~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~s 276 (792)
.+.. .. ......|...|++++|+|+|++|++++.+.. .+.+|+..
T Consensus 169 ~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~----------------------~v~iwd~~ 226 (355)
T 3vu4_A 169 SGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT----------------------IIRVFKTE 226 (355)
T ss_dssp ------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS----------------------EEEEEETT
T ss_pred CCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC----------------------EEEEEECC
Confidence 3200 00 1234557778888888888876665554432 14455555
Q ss_pred CCCEEEEeeccCcccC-CCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 277 SGDHVSLAAELPLMSS-LPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 277 sG~~~~l~s~l~~l~g-h~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
++.++.... .+ |...|.+++|+|||++|+ +++.|++|.-|+...+
T Consensus 227 ~~~~~~~~~-----~g~h~~~v~~~~~s~~~~~l~--------------------------s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 227 DGVLVREFR-----RGLDRADVVDMKWSTDGSKLA--------------------------VVSDKWTLHVFEIFND 272 (355)
T ss_dssp TCCEEEEEE-----CTTCCSCEEEEEECTTSCEEE--------------------------EEETTCEEEEEESSCC
T ss_pred CCcEEEEEE-----cCCCCCcEEEEEECCCCCEEE--------------------------EEECCCEEEEEEccCC
Confidence 555543332 13 889999999999999999 8899999999997655
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=174.70 Aligned_cols=198 Identities=12% Similarity=0.056 Sum_probs=139.7
Q ss_pred CCCeEEEEEcCC----CCEEEEEEC--------------------CCeEEEEEC-CCCcEEEEecCCCCCcEEEEEcc--
Q 036953 95 PRSTIAAAFSPD----GRTLASTHG--------------------DHTVKIIDC-QTGNCLKVLSGHRRTPWVVRFHP-- 147 (792)
Q Consensus 95 ~~~V~sLafSPD----G~~LaSGS~--------------------DGtVrIWDl-~tgk~v~~L~gH~~~VtsVafSP-- 147 (792)
...|..++|+|| ++++++++. |+.|++|++ .+++.+..+.+|...++.++|++
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ 190 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence 346889999999 888887663 888889988 44777788888888888888887
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEec-c---CCCeeEEEEcCCCcEEE------------EEcCCe-EEEEECCCC
Q 036953 148 LRSEILASGSLDHEVRLWDANTSECIGSCD-F---YRPIASIAFHAEGELLA------------VASGHK-LYIWPYNNK 210 (792)
Q Consensus 148 ~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h---~s~V~sVafSpdG~~La------------sgSdd~-V~IWDlrt~ 210 (792)
.++.+|++++.|++||+||+++++++.++. + ...+.+++|+|+|++++ +++.++ |++||..++
T Consensus 191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg 270 (356)
T 2w18_A 191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT 270 (356)
T ss_dssp TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence 466899999999999999999999999985 3 34677889999999874 455444 999999888
Q ss_pred CcccCCeE--EecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccC
Q 036953 211 EEASSPII--VLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELP 288 (792)
Q Consensus 211 ~~~~~~~~--~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~ 288 (792)
+....... ..+|...+.+.+++ +. ++++++.+ ..+++|+..+|.+++...
T Consensus 271 k~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~D----------------------gTIkIWDl~tGk~l~tL~--- 322 (356)
T 2w18_A 271 LSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTS----------------------GTIAIWDLLLGQCTALLP--- 322 (356)
T ss_dssp EEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETT----------------------SCEEEEETTTCSEEEEEC---
T ss_pred EEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCC----------------------CcEEEEECCCCcEEEEec---
Confidence 75430000 01333334333333 44 33333321 357788888888876654
Q ss_pred cccCCCceEE-EeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccc
Q 036953 289 LMSSLPFLIV-PSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 289 ~l~gh~~~Vw-dV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
+|...++ .++|+|||++|+ +|+.|+||.-||.
T Consensus 323 ---gH~~~vvs~vafSPDG~~La--------------------------SGS~D~TIklWd~ 355 (356)
T 2w18_A 323 ---PVSDQHWSFVKWSGTDSHLL--------------------------AGQKDGNIFVYHY 355 (356)
T ss_dssp ---CC--CCCCEEEECSSSSEEE--------------------------EECTTSCEEEEEE
T ss_pred ---CCCCCeEEEEEECCCCCEEE--------------------------EEECCCcEEEecC
Confidence 3666555 589999999999 8999999999984
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-16 Score=170.84 Aligned_cols=237 Identities=12% Similarity=0.056 Sum_probs=170.2
Q ss_pred CceEeeecccc--eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCe
Q 036953 24 RARNVSRLLAH--REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRST 98 (792)
Q Consensus 24 ~~r~V~~l~~~--rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V 98 (792)
+...+|+.... +.+..+...+...+|+|+++.++.+.. +. ....|++|+..+++ +..|...+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~-----~~--------~~~~i~~~d~~tg~~~~l~~~~~~~ 225 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTF-----ES--------GRSALVIQTLANGAVRQVASFPRHN 225 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEEC-----TT--------SSCEEEEEETTTCCEEEEECCSSCE
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEe-----cC--------CCcEEEEEECCCCcEEEeecCCCcc
Confidence 46677776543 223334457888899999876654421 10 12478888877653 45788889
Q ss_pred EEEEEcCCCCEEE-EEECCCe--EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcE
Q 036953 99 IAAAFSPDGRTLA-STHGDHT--VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DH--EVRLWDANTSEC 172 (792)
Q Consensus 99 ~sLafSPDG~~La-SGS~DGt--VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-Dg--tVrLWDl~tg~~ 172 (792)
.+++|+|||++|+ +++.|+. |++||+.+++. ..+..|...+.+++|+| ++++|++++. ++ .|.+||+.+++.
T Consensus 226 ~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 226 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAP 303 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred cCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCE
Confidence 9999999999888 6665554 99999988875 56778999999999999 8888888776 44 688889998876
Q ss_pred EEEeccCCCeeEEEEcCCCcEEEEEcC----CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 173 IGSCDFYRPIASIAFHAEGELLAVASG----HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 173 v~t~~h~s~V~sVafSpdG~~LasgSd----d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
.....+...+.+++|+|+|++|++++. ..|++||+.+++.. .+..+ ..+.+++|+|+|+.|++++.+..-
T Consensus 304 ~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~----~l~~~-~~~~~~~~spdg~~l~~~s~~~~~- 377 (415)
T 2hqs_A 304 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ----VLSST-FLDETPSLAPNGTMVIYSSSQGMG- 377 (415)
T ss_dssp EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE----ECCCS-SSCEEEEECTTSSEEEEEEEETTE-
T ss_pred EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE----EecCC-CCcCCeEEcCCCCEEEEEEcCCCc-
Confidence 554456678899999999999988873 24999999887642 23333 389999999999988877754310
Q ss_pred cCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCc
Q 036953 249 SSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSR 307 (792)
Q Consensus 249 s~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr 307 (792)
..++++....+.... +.+|...|++++|+|.-.
T Consensus 378 -------------------~~l~~~d~~g~~~~~-------l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 378 -------------------SVLNLVSTDGRFKAR-------LPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp -------------------EEEEEEETTSCCEEE-------CCCSSSEEEEEEECCCCC
T ss_pred -------------------cEEEEEECCCCcEEE-------eeCCCCCCcCCccccccc
Confidence 124555544332222 334889999999999754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=152.65 Aligned_cols=252 Identities=12% Similarity=0.061 Sum_probs=167.6
Q ss_pred CCCceEeeecccceeeC--CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC-CC----cCCC
Q 036953 22 RRRARNVSRLLAHREIS--PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY-CP----LVPP 94 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels--~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t-~~----L~gH 94 (792)
..+...+|+....+... .....+..+.|+|++++++++ .++.|.+|+... ++ ...|
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-----------------~~~~i~~~d~~~~~~~~~~~~~~ 82 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLN-----------------SEGLLYRLSLAGDPSPEKVDTGF 82 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEE-----------------ETTEEEEEESSSCCSCEECCCTT
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEE-----------------cCCeEEEEeCCCCCCceEecccc
Confidence 45667888876654432 334567888999998766543 145677787766 42 2234
Q ss_pred -CCCeEEEEEcCCCCEEEEEEC--CCeEEEE--ECCCCcEEEEecCCCCCcEEEEEccCCCCEEE-EEeCCCeEEEEEC-
Q 036953 95 -PRSTIAAAFSPDGRTLASTHG--DHTVKII--DCQTGNCLKVLSGHRRTPWVVRFHPLRSEILA-SGSLDHEVRLWDA- 167 (792)
Q Consensus 95 -~~~V~sLafSPDG~~LaSGS~--DGtVrIW--Dl~tgk~v~~L~gH~~~VtsVafSP~dg~lLa-SgS~DgtVrLWDl- 167 (792)
...+.+++|+||+++|++++. ++.++|| ++.+++ ...+..+. .+..++|+| ++++|+ +++.|+.+++|++
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~ 159 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP-DGKSFTYCGIRDQVFDIYSMD 159 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT-TSSEEEEEEEETTEEEEEEEE
T ss_pred ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC-CCCEEEEEECCCCceEEEEEE
Confidence 367889999999999999983 3445555 555554 44555444 489999999 777666 7889999999985
Q ss_pred -CCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 168 -NTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 168 -~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
.+++......+...+.+++|+|++++|++++ ++.++||+++..... ......+...+..++|+|++++|++++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 160 IDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS--VERITDSAYGDWFPHPSPSGDKVVFVSYD 237 (297)
T ss_dssp TTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--EEECCCCSEEEEEEEECTTSSEEEEEEEE
T ss_pred CCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC--cEEEecCCcccCCeEECCCCCEEEEEEcC
Confidence 4555554456778899999999999887765 445888887632211 22344466778999999999988877764
Q ss_pred CccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEE
Q 036953 245 NDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQ 311 (792)
Q Consensus 245 ~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~ 311 (792)
....... ......++++....+....+.. +.+|...++.+.|+|||+.|++
T Consensus 238 ~~~~~~~------------~~~~~~l~~~d~~~~~~~~~~~----~~~~~~~~~~~~~spdg~~l~~ 288 (297)
T 2ojh_A 238 ADVFDHP------------RDLDVRVQLMDMDGGNVETLFD----LFGGQGTMNSPNWSPDGDEFAY 288 (297)
T ss_dssp TTCCSCC------------SSEEEEEEEEETTSCSCEEEEE----EEESTTTSCSCCBCTTSSEEEE
T ss_pred CCCCccc------------ccCceEEEEEecCCCCceeeec----cCCCCcccccceECCCCCEEEE
Confidence 3211000 0001235566655555444332 2236677888999999998883
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-15 Score=148.34 Aligned_cols=204 Identities=9% Similarity=0.032 Sum_probs=144.3
Q ss_pred eCCCeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CcEEEEecCC-CCCcEEEEEccCCC
Q 036953 76 VEAESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT-GNCLKVLSGH-RRTPWVVRFHPLRS 150 (792)
Q Consensus 76 s~d~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t-gk~v~~L~gH-~~~VtsVafSP~dg 150 (792)
..++.|++|+..++ .+..|...|.+++|+||+++|++++ ++.|++||+.+ ++....+..| ...|.+++|+| ++
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg 96 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DG 96 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TS
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CC
Confidence 35678888888765 3456888999999999999999987 78999999999 8877766666 36789999999 89
Q ss_pred CEEEEEe--CCCeEEE--EECCCCcEEEEeccCCCeeEEEEcCCCcEEE-EEc-CCeEEEEECCCCCcccCCeEEecCCC
Q 036953 151 EILASGS--LDHEVRL--WDANTSECIGSCDFYRPIASIAFHAEGELLA-VAS-GHKLYIWPYNNKEEASSPIIVLKTRR 224 (792)
Q Consensus 151 ~lLaSgS--~DgtVrL--WDl~tg~~v~t~~h~s~V~sVafSpdG~~La-sgS-dd~V~IWDlrt~~~~~~~~~~~~h~~ 224 (792)
++|++++ .++.+++ ||+.+++ ...+.....+..++|+|++++|+ ++. ++.++||+++..... ......+..
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~ 173 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV--ETRLTHGEG 173 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC--EEECCCSSS
T ss_pred CEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc--ceEcccCCC
Confidence 9999998 3344455 5555555 34444445689999999999887 444 566888886432211 223455677
Q ss_pred CeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEec-CCCEEEEeeccCcccCCCceEEEeEEC
Q 036953 225 SLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQ-SGDHVSLAAELPLMSSLPFLIVPSVSI 303 (792)
Q Consensus 225 sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~s-sG~~~~l~s~l~~l~gh~~~VwdV~~S 303 (792)
.+.+++|+|+++.+++++... ....+|... .+.... .+..+...++.+.|+
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~----------------------~~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~s 225 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRT----------------------GQMQIWRVRVDGSSVE------RITDSAYGDWFPHPS 225 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTT----------------------SSCEEEEEETTSSCEE------ECCCCSEEEEEEEEC
T ss_pred ccccceECCCCCEEEEEecCC----------------------CCccEEEECCCCCCcE------EEecCCcccCCeEEC
Confidence 899999999999887776421 012222222 222221 122366789999999
Q ss_pred CCCcEEEEc
Q 036953 304 DDSRIDLQH 312 (792)
Q Consensus 304 pDGr~lv~~ 312 (792)
|||++|++.
T Consensus 226 ~dg~~l~~~ 234 (297)
T 2ojh_A 226 PSGDKVVFV 234 (297)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 999998833
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-14 Score=147.02 Aligned_cols=203 Identities=12% Similarity=0.040 Sum_probs=147.8
Q ss_pred eCCCeEEEEeccCCCc----CCCC---------CCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCcEEEEecCCCCCc
Q 036953 76 VEAESLRHLSAKYCPL----VPPP---------RSTIAAAFSPDGRTLASTH--GDHTVKIIDCQTGNCLKVLSGHRRTP 140 (792)
Q Consensus 76 s~d~sIrvWd~~t~~L----~gH~---------~~V~sLafSPDG~~LaSGS--~DGtVrIWDl~tgk~v~~L~gH~~~V 140 (792)
..++.|.+||..+++. ..+. ..+.+++|+|+++++++++ .++.|.+||+.+++.+..+..+...+
T Consensus 108 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMS 187 (353)
T ss_dssp TTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTC
T ss_pred cCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCcc
Confidence 3457778887765532 1111 1278999999999888776 47899999999999988887677778
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----cCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcc
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-----FYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEA 213 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-----h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~ 213 (792)
.+++|+| ++++++.++.++.|.+||+.+++.+..+. +...+..++|+|++++|++++ ++.|++||..+++..
T Consensus 188 ~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 188 TGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp CCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred ceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 9999999 88999999999999999999998887764 344678899999999877776 356999999887754
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCC
Q 036953 214 SSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSL 293 (792)
Q Consensus 214 ~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh 293 (792)
. ..... . -..++|+|+|++++++.... ..+.+++..++..+.... .
T Consensus 267 ~---~~~~~-~-~~~~~~s~dg~~l~v~~~~~----------------------~~v~~~d~~~~~~~~~~~-------~ 312 (353)
T 3vgz_A 267 A---KVAAP-E-SLAVLFNPARNEAYVTHRQA----------------------GKVSVIDAKSYKVVKTFD-------T 312 (353)
T ss_dssp E---EEECS-S-CCCEEEETTTTEEEEEETTT----------------------TEEEEEETTTTEEEEEEE-------C
T ss_pred E---EEEcC-C-CceEEECCCCCEEEEEECCC----------------------CeEEEEECCCCeEEEEEe-------c
Confidence 3 11111 2 25689999999877766321 124444544444433322 2
Q ss_pred CceEEEeEECCCCcEEEEcc
Q 036953 294 PFLIVPSVSIDDSRIDLQHA 313 (792)
Q Consensus 294 ~~~VwdV~~SpDGr~lv~~~ 313 (792)
...++.++|+|||+++++..
T Consensus 313 ~~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 313 PTHPNSLALSADGKTLYVSV 332 (353)
T ss_dssp CSEEEEEEECTTSCEEEEEE
T ss_pred CCCCCeEEEcCCCCEEEEEE
Confidence 34678999999999777443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-14 Score=150.34 Aligned_cols=174 Identities=10% Similarity=0.061 Sum_probs=132.6
Q ss_pred CCcEEEEEeCCCeEEEEeccCCCc----CCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCcE-EEEecCCCCCcE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCPL----VPPPRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQTGNC-LKVLSGHRRTPW 141 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~L----~gH~~~V~sLafSPDG~~LaSGS~-DGtVrIWDl~tgk~-v~~L~gH~~~Vt 141 (792)
.+..+++...++.|++||..++++ ..+...+ .++|+||++++++++. ++.|.+||+.+++. ...+..+..+..
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 87 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMA 87 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCC
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCcc
Confidence 444566667788999999886643 2345556 9999999997777766 88999999999987 777776776666
Q ss_pred EEEEccCCCCEEEEEeCCC---eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCe-EEEEECCCCCcccC
Q 036953 142 VVRFHPLRSEILASGSLDH---EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHK-LYIWPYNNKEEASS 215 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~Dg---tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~-V~IWDlrt~~~~~~ 215 (792)
+++|+| ++++++++..++ .|++||+.+++.+..+.......+++|+|+|++|++++ ++. |++|++........
T Consensus 88 ~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 88 DVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp CEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred ceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 699999 888888554442 89999999999988887777889999999998666554 467 99999986543211
Q ss_pred C-eEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 216 P-IIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 216 ~-~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
. ............++|+|+|+++++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 195 (331)
T 3u4y_A 167 TGQEFISGGTRPFNITFTPDGNFAFVANL 195 (331)
T ss_dssp EEEEEECSSSSEEEEEECTTSSEEEEEET
T ss_pred cCCccccCCCCccceEECCCCCEEEEEeC
Confidence 1 122234556899999999998877764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-15 Score=171.77 Aligned_cols=211 Identities=11% Similarity=0.107 Sum_probs=143.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCc--EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk--~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
.|.+++|||||++|++++. +.|++||+.+++ ....+..|...+..++|+| |+++|+.++ ++.|++||+.+++...
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 3789999999999999987 899999999873 3456777888999999999 999999887 5699999999987765
Q ss_pred EeccCCC-----------------eeEEEEcCCCcEEEEEc-CC---------------------------------eEE
Q 036953 175 SCDFYRP-----------------IASIAFHAEGELLAVAS-GH---------------------------------KLY 203 (792)
Q Consensus 175 t~~h~s~-----------------V~sVafSpdG~~LasgS-dd---------------------------------~V~ 203 (792)
....... +..++|+|||++|++++ ++ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 5432221 47899999999988876 32 688
Q ss_pred EEECCC-CCcccCCeEEe--cCCCCeEEEEEccCCCeEEEEEe----------eCccccCCCceeeecCC-------Ccc
Q 036953 204 IWPYNN-KEEASSPIIVL--KTRRSLRAVHFHPHAAPFVLTAE----------VNDLDSSDSSMTRATSP-------GYL 263 (792)
Q Consensus 204 IWDlrt-~~~~~~~~~~~--~h~~sVtsVafSPdG~~LlaS~s----------~~dLrs~d~~~~l~t~s-------g~~ 263 (792)
+||+.+ ++... ... .+...+..++| |||+.|++++. .|++........+.... ...
T Consensus 267 ~~d~~~~~~~~~---~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 342 (741)
T 2ecf_A 267 VISPAEQAQTQW---IDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL 342 (741)
T ss_dssp EECSSTTCCCEE---ECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred EEECCCCCceEE---ecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence 999987 65322 111 35677999999 99998887664 22222222222222111 133
Q ss_pred cCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEe-EECCCCcEEEEccc
Q 036953 264 RYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPS-VSIDDSRIDLQHAS 314 (792)
Q Consensus 264 ~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV-~~SpDGr~lv~~~~ 314 (792)
.|.+....++....+...++.. ....+..+...|..+ .|+|||+.|++.+.
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~ 399 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAG 399 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence 4444443444444333222221 122344567778887 59999998874443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=168.87 Aligned_cols=146 Identities=15% Similarity=0.127 Sum_probs=117.0
Q ss_pred CCCCCeEEEEEcCCCCEEE----EEECCCeEEEEECCCC--------c---EEEEecCCCCCcEEEEEccCCCCEEEEEe
Q 036953 93 PPPRSTIAAAFSPDGRTLA----STHGDHTVKIIDCQTG--------N---CLKVLSGHRRTPWVVRFHPLRSEILASGS 157 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~La----SGS~DGtVrIWDl~tg--------k---~v~~L~gH~~~VtsVafSP~dg~lLaSgS 157 (792)
.+...|.+++|+|++++|+ +|+.|+.|+|||+.++ + .+..+.+|...|++++|+|+++++|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4566799999999999999 7888999999998654 1 24566789999999999994489999999
Q ss_pred CCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEec-------CCCCeEE
Q 036953 158 LDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLK-------TRRSLRA 228 (792)
Q Consensus 158 ~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~-------h~~sVts 228 (792)
.|++|++||+++++.+... .|...|.+++|+|+|++|++++. +.|++||.+ ++... .... |...|.+
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~---~~~~~~~~~~~~~~~v~~ 245 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK---VIPCPPFYESDHPVRVLD 245 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE---EECCCTTCCTTSCEEEEE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc---cccCCcccCCCCceeEEE
Confidence 9999999999998665443 57889999999999999999984 559999998 33211 1111 2237999
Q ss_pred EEEccCCCeEEEEE
Q 036953 229 VHFHPHAAPFVLTA 242 (792)
Q Consensus 229 VafSPdG~~LlaS~ 242 (792)
++|++++.++++..
T Consensus 246 v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 246 VLWIGTYVFAIVYA 259 (434)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEecCceEEEEEc
Confidence 99999888665544
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-15 Score=171.36 Aligned_cols=209 Identities=8% Similarity=-0.008 Sum_probs=147.2
Q ss_pred CCCceEeeecccceeeC---CCCc---eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---c-
Q 036953 22 RRRARNVSRLLAHREIS---PKTK---YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---L- 91 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels---~~tk---~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L- 91 (792)
..+...+|+....+... .... .+...+|+|+++.++++..... .+....++.+.+|+..+++ +
T Consensus 35 ~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~-------~~~~~~~~~i~~~d~~~~~~~~l~ 107 (723)
T 1xfd_A 35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEP-------IYQHSYTGYYVLSKIPHGDPQSLD 107 (723)
T ss_dssp SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC-------CSSSCCCSEEEEEESSSCCCEECC
T ss_pred CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCcc-------ceeecceeeEEEEECCCCceEecc
Confidence 34578899876654322 2222 3788999999997766532111 1112235678888887653 2
Q ss_pred --CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCc------------------EEEEEccCCCC
Q 036953 92 --VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP------------------WVVRFHPLRSE 151 (792)
Q Consensus 92 --~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V------------------tsVafSP~dg~ 151 (792)
.+|...+..++|||||++|++++. +.|++||+.+++.......+...+ .+++|+| |++
T Consensus 108 ~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~ 185 (723)
T 1xfd_A 108 PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGT 185 (723)
T ss_dssp CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSS
T ss_pred CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCC
Confidence 234455889999999999999886 789999999988777766555444 7899999 999
Q ss_pred EEEEEeCCC----------------------------------eEEEEECCCCcEEEEec-c------CCCeeEEEEcCC
Q 036953 152 ILASGSLDH----------------------------------EVRLWDANTSECIGSCD-F------YRPIASIAFHAE 190 (792)
Q Consensus 152 lLaSgS~Dg----------------------------------tVrLWDl~tg~~v~t~~-h------~s~V~sVafSpd 190 (792)
.|++++.|+ +|++||+.+++....+. + ...+..++|+||
T Consensus 186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpD 265 (723)
T 1xfd_A 186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS 265 (723)
T ss_dssp EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCC
Confidence 999887653 79999999887644443 2 457889999999
Q ss_pred CcEEEEEcC-----CeEEEEECCCCCcccCCeEEecCCCCe----EEEEEccCCCeEEEE
Q 036953 191 GELLAVASG-----HKLYIWPYNNKEEASSPIIVLKTRRSL----RAVHFHPHAAPFVLT 241 (792)
Q Consensus 191 G~~LasgSd-----d~V~IWDlrt~~~~~~~~~~~~h~~sV----tsVafSPdG~~LlaS 241 (792)
|++|++..+ ..|++||+.+++... .....+...+ ..++|+|||+.|+..
T Consensus 266 g~~l~~~~~~~~~~~~i~~~d~~~g~~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 266 TKVAVTWLNRAQNVSILTLCDATTGVCTK--KHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp SEEEEEEEETTSCEEEEEEEETTTCCEEE--EEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred CeEEEEEEcCCCCeEEEEEEeCCCCcceE--EEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 998877642 239999998876432 1112233333 378999999988875
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-13 Score=157.73 Aligned_cols=240 Identities=10% Similarity=0.028 Sum_probs=165.2
Q ss_pred CcEEEEEeCCCeEEEEec--cCCCc---CCCCCCeEEEEEcC----CCCEEEEEEC-CCeEEEEECCCCcEEEEecCC--
Q 036953 69 KRGLVSWVEAESLRHLSA--KYCPL---VPPPRSTIAAAFSP----DGRTLASTHG-DHTVKIIDCQTGNCLKVLSGH-- 136 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~--~t~~L---~gH~~~V~sLafSP----DG~~LaSGS~-DGtVrIWDl~tgk~v~~L~gH-- 136 (792)
+..+++.+.+++|++||. .+.+. ..+...+..++|+| ||++|++++. +++|.|||..+++++..+..+
T Consensus 190 g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~ 269 (543)
T 1nir_A 190 GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 269 (543)
T ss_dssp SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE
T ss_pred CCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCc
Confidence 345666677788999998 55422 12455689999999 9999999884 899999999999998888642
Q ss_pred --------CC-CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE--EeccCCCeeEEEEcCCCcEEEEEc--CCeEE
Q 036953 137 --------RR-TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG--SCDFYRPIASIAFHAEGELLAVAS--GHKLY 203 (792)
Q Consensus 137 --------~~-~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~--t~~h~s~V~sVafSpdG~~LasgS--dd~V~ 203 (792)
.. .+..+.++|++..++++...+++|.+||+.+.+.+. .+.+...+.++.|+|+|++|++++ +++|.
T Consensus 270 ~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~ 349 (543)
T 1nir_A 270 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVA 349 (543)
T ss_dssp CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEE
T ss_pred ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEE
Confidence 23 788999999666777888899999999998865444 556677788999999999877665 56799
Q ss_pred EEECCCCCcccCCeEE--ecCCCCeEEEEEccCCCeEEEEEe-------eCcccc-------CCCceeeecCCC---ccc
Q 036953 204 IWPYNNKEEASSPIIV--LKTRRSLRAVHFHPHAAPFVLTAE-------VNDLDS-------SDSSMTRATSPG---YLR 264 (792)
Q Consensus 204 IWDlrt~~~~~~~~~~--~~h~~sVtsVafSPdG~~LlaS~s-------~~dLrs-------~d~~~~l~t~sg---~~~ 264 (792)
+||..+++... .... ..|......+ ++|++..+++++. +|+++. +....++....+ +..
T Consensus 350 v~D~~tg~l~~-~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~ 427 (543)
T 1nir_A 350 VIDSKDRRLSA-LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK 427 (543)
T ss_dssp EEETTTTEEEE-EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred EEECCCCeEEE-eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE
Confidence 99999887543 1111 1143333333 5788666666654 344444 332233443322 455
Q ss_pred CCCCceEEEEecC-------CCEEEEeecc------Cc--------ccCCCceEEEeEECCCCcEEE
Q 036953 265 YPPPAVFVANAQS-------GDHVSLAAEL------PL--------MSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 265 ~p~~~~~l~~~ss-------G~~~~l~s~l------~~--------l~gh~~~VwdV~~SpDGr~lv 310 (792)
+.+....+|+... ++.+.++.-. .. +..+..+++.+.|+|||++++
T Consensus 428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~ 494 (543)
T 1nir_A 428 THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 494 (543)
T ss_dssp CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred cCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEE
Confidence 6666667777541 2233443310 11 134578999999999999998
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=142.35 Aligned_cols=203 Identities=10% Similarity=0.052 Sum_probs=131.6
Q ss_pred CCCceEeeecccc---eeeC--CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC-CCeEEEEecc--CCCc--
Q 036953 22 RRRARNVSRLLAH---REIS--PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE-AESLRHLSAK--YCPL-- 91 (792)
Q Consensus 22 ~s~~r~V~~l~~~---rels--~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~-d~sIrvWd~~--t~~L-- 91 (792)
..+.+.+|+.... +.+. .....+..++|+|+++.+.+ +.. ++.+++|+.. ++.+
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~----------------~~~~~~~v~~~~~~~~~~~~~~ 76 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYV----------------GVRPEFRVLAYRIAPDDGALTF 76 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEE----------------EETTTTEEEEEEECTTTCCEEE
T ss_pred CCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEE----------------eecCCCeEEEEEecCCCCceee
Confidence 3566788876421 1111 22334566777777664332 222 2556666654 2221
Q ss_pred ---CCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECC---CCcEEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEE
Q 036953 92 ---VPPPRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQ---TGNCLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVR 163 (792)
Q Consensus 92 ---~gH~~~V~sLafSPDG~~LaSGS~-DGtVrIWDl~---tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVr 163 (792)
......+..++|+|++++|++++. ++.|++||+. ..+.+..+..+ ..+.+++|+| +++++++++ .|+.|+
T Consensus 77 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 77 AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRIC 154 (343)
T ss_dssp EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEE
T ss_pred ccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEE
Confidence 011237889999999998877765 8899999994 34455555544 4588999999 888777777 899999
Q ss_pred EEECCC-CcEEE----E--eccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCC--CCcccCCeEEe--c----CCCCe
Q 036953 164 LWDANT-SECIG----S--CDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNN--KEEASSPIIVL--K----TRRSL 226 (792)
Q Consensus 164 LWDl~t-g~~v~----t--~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt--~~~~~~~~~~~--~----h~~sV 226 (792)
+||+.+ ++... . ......+..++|+|++++|++++ ++.|++||++. ++... ..... . ....+
T Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~ 233 (343)
T 1ri6_A 155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC-VQTLDMMPENFSDTRWA 233 (343)
T ss_dssp EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE-EEEEECSCTTCCSCCCE
T ss_pred EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE-EeeccccCccccccCCc
Confidence 999987 65432 1 23455788999999999776654 56699999964 22110 01111 1 13457
Q ss_pred EEEEEccCCCeEEEEEe
Q 036953 227 RAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s 243 (792)
..++|+|+|++++++..
T Consensus 234 ~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 234 ADIHITPDGRHLYACDR 250 (343)
T ss_dssp EEEEECTTSSEEEEEET
T ss_pred cceEECCCCCEEEEEec
Confidence 78999999998877663
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-14 Score=160.89 Aligned_cols=237 Identities=14% Similarity=0.092 Sum_probs=162.8
Q ss_pred CcEEEEEeCCCeEEEEeccCCCc----C-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC--CCCcEEEEecCCCCCcE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPL----V-PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDC--QTGNCLKVLSGHRRTPW 141 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L----~-gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl--~tgk~v~~L~gH~~~Vt 141 (792)
+..+++...+++|.+||..++++ . ++. +..++|+|||++|++++.|++|++||+ .+++++..+. +...+.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~ 225 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEAR 225 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcc
Confidence 34556666788999999887643 2 333 899999999999999999999999999 8888888887 455689
Q ss_pred EEEEccC---CCCEEEEEe-CCCeEEEEECCCCcEEEEecc------------CCCeeEEEEcCCCcEEEEEc--CCeEE
Q 036953 142 VVRFHPL---RSEILASGS-LDHEVRLWDANTSECIGSCDF------------YRPIASIAFHAEGELLAVAS--GHKLY 203 (792)
Q Consensus 142 sVafSP~---dg~lLaSgS-~DgtVrLWDl~tg~~v~t~~h------------~s~V~sVafSpdG~~LasgS--dd~V~ 203 (792)
.++|+|. +++++++++ .+++|.+||..+++++..+.. ...+..+.+++++..++++. ++.|.
T Consensus 226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~ 305 (543)
T 1nir_A 226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 305 (543)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE
Confidence 9999982 556777766 589999999999999888742 23688999999887666554 55699
Q ss_pred EEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-eCccccCCC-----ceeeec----CCC-cccC-CCC-ce
Q 036953 204 IWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDLDSSDS-----SMTRAT----SPG-YLRY-PPP-AV 270 (792)
Q Consensus 204 IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dLrs~d~-----~~~l~t----~sg-~~~~-p~~-~~ 270 (792)
+||+.+.+... .....+...+..+.|+|+|+++++++. ...|..+|. ...+.. ..+ ..++ .+. ..
T Consensus 306 vvd~~~~~~l~--~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~ 383 (543)
T 1nir_A 306 LVNYKDIDNLT--VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGP 383 (543)
T ss_dssp EEECTTSSSCE--EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEE
T ss_pred EEEecCCCcce--eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCcc
Confidence 99998766432 123345667889999999998887765 333333222 122221 111 1111 122 23
Q ss_pred EEEEec-CCCEEEEeec------------cCcccCCCceEEEeEECCCCcEEE
Q 036953 271 FVANAQ-SGDHVSLAAE------------LPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 271 ~l~~~s-sG~~~~l~s~------------l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.++... .++.+.+..- ...+++|...++.+.++|||++|+
T Consensus 384 ~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~ 436 (543)
T 1nir_A 384 VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY 436 (543)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEE
T ss_pred EEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEE
Confidence 223222 2234444431 123445667778899999999998
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-13 Score=142.38 Aligned_cols=203 Identities=11% Similarity=0.105 Sum_probs=136.2
Q ss_pred CCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc-----CC
Q 036953 22 RRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL-----VP 93 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L-----~g 93 (792)
..+.+.+|+....+... ...... .++|+++++.+. +....++.|.+|+..++++ ..
T Consensus 18 ~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~---------------~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVV---------------VTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp GGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEE---------------EEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred CCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEE---------------EEeCCCCeEEEEECCCCceeEEeccc
Confidence 45567788766544332 222334 666777665321 1112355677777665543 23
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC-EEEEEeCCCe-EEEEECC
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDH---TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE-ILASGSLDHE-VRLWDAN 168 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DG---tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~-lLaSgS~Dgt-VrLWDl~ 168 (792)
+.....+++|+|++++|+++..++ .|.+||+.+++.+..+..+ ..+.+++|+| +++ ++++...++. |.+|++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~ 159 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP-NGNGLILIDRSSANTVRRFKID 159 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT-TSSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC-CCCEEEEEecCCCceEEEEEEC
Confidence 344444599999999999555553 8999999999988887744 4568999999 776 5555566688 9999987
Q ss_pred CCcEE-----EEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 169 TSECI-----GSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 169 tg~~v-----~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
....+ ..+........++|+|+|++|++++ ++.|++||+.+++... ..........+..++|+|+|++++++
T Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 160 ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-LLNAVGTNNLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-EEEEEECSSCCCCEEECTTSSEEEEE
T ss_pred CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-eeeeccCCCCCceEEECCCCCEEEEE
Confidence 64332 2234556789999999999766655 5569999998877511 12233345677899999999987766
Q ss_pred Ee
Q 036953 242 AE 243 (792)
Q Consensus 242 ~s 243 (792)
..
T Consensus 239 ~~ 240 (331)
T 3u4y_A 239 TE 240 (331)
T ss_dssp CS
T ss_pred Ec
Confidence 53
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-14 Score=144.90 Aligned_cols=165 Identities=12% Similarity=0.084 Sum_probs=121.5
Q ss_pred eCCCeEEEEecc-CC-----CcCCCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECC--CCc--EEEEecCCCCCcEEEE
Q 036953 76 VEAESLRHLSAK-YC-----PLVPPPRSTIAAAFSPDGRTLASTHGD-HTVKIIDCQ--TGN--CLKVLSGHRRTPWVVR 144 (792)
Q Consensus 76 s~d~sIrvWd~~-t~-----~L~gH~~~V~sLafSPDG~~LaSGS~D-GtVrIWDl~--tgk--~v~~L~gH~~~VtsVa 144 (792)
..++.|++|+.. .+ ....|...+.+++|+|++++|++++.+ +.|++|++. +++ .+..+..+. .+..++
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 90 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIS 90 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEE
T ss_pred CCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEE
Confidence 567788888774 22 123567788999999999999998886 999999997 554 344555444 789999
Q ss_pred EccCCCCEEEEEe-CCCeEEEEECC---CCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCC-CCcccCC-
Q 036953 145 FHPLRSEILASGS-LDHEVRLWDAN---TSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNN-KEEASSP- 216 (792)
Q Consensus 145 fSP~dg~lLaSgS-~DgtVrLWDl~---tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt-~~~~~~~- 216 (792)
|+| +++++++++ .++.|++||+. ..+.+..+.....+.+++|+|+|++|++++ ++.|++||+.+ ++.....
T Consensus 91 ~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 169 (343)
T 1ri6_A 91 TDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP 169 (343)
T ss_dssp ECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred EcC-CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc
Confidence 999 888776665 48899999994 445556666666799999999999887775 56799999987 4321100
Q ss_pred -eEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 217 -IIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 217 -~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
.........+..++|+|+++++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 170 AEVTTVEGAGPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp EEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred cccccCCCCCcceEEECCCCCEEEEEe
Confidence 11222345788999999999887766
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-14 Score=159.92 Aligned_cols=155 Identities=10% Similarity=0.004 Sum_probs=122.0
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---------------CcCCCCCCeEEEEEcCC-
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---------------PLVPPPRSTIAAAFSPD- 106 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---------------~L~gH~~~V~sLafSPD- 106 (792)
.+..++|++++++++.+. .+++.|+.|++|+..+. .+.+|...|.+++|+|+
T Consensus 94 ~v~~l~~spdg~~lav~~------------~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 161 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACM------------MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV 161 (434)
T ss_dssp CEEEEEECTTSCEEEEEE------------EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC
T ss_pred cccEEEEcCCCCEEEEEE------------eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC
Confidence 477888888877654110 03346777888876432 24568999999999997
Q ss_pred CCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-c-------
Q 036953 107 GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-F------- 178 (792)
Q Consensus 107 G~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h------- 178 (792)
+++|++++.||+|+|||+.+++.+....+|...|++++|+| ++++|++|+.|++|++||++ ++....+. +
T Consensus 162 ~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 162 PSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDH 239 (434)
T ss_dssp TTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred CCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCC
Confidence 89999999999999999999887777778999999999999 89999999999999999998 55555542 1
Q ss_pred CCCeeEEEEcCCCcEEEEEc--CC------eEEEEECCCCC
Q 036953 179 YRPIASIAFHAEGELLAVAS--GH------KLYIWPYNNKE 211 (792)
Q Consensus 179 ~s~V~sVafSpdG~~LasgS--dd------~V~IWDlrt~~ 211 (792)
...+.+++|++++.++++.+ ++ .+++||+++.+
T Consensus 240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 12789999999988886544 21 29999998764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=166.84 Aligned_cols=175 Identities=13% Similarity=0.134 Sum_probs=129.8
Q ss_pred eeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcCCCCEEEEEECCC
Q 036953 44 VPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSPDGRTLASTHGDH 117 (792)
Q Consensus 44 V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSPDG~~LaSGS~DG 117 (792)
+...+|+|+++.++.+ .. +.|.+|+..++ ++..|...+..++|||||++|++++. +
T Consensus 111 v~~~~~SpDg~~l~~~----------------~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~ 172 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFP----------------LG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-R 172 (741)
T ss_dssp SCCCEECTTSSEEEEE----------------ET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-T
T ss_pred cceeEECCCCCEEEEE----------------eC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-C
Confidence 5667788887765444 21 67888887765 35677788999999999999999885 5
Q ss_pred eEEEEECCCCcEEEEecCCCCC----------------cEEEEEccCCCCEEEEEeCCC---------------------
Q 036953 118 TVKIIDCQTGNCLKVLSGHRRT----------------PWVVRFHPLRSEILASGSLDH--------------------- 160 (792)
Q Consensus 118 tVrIWDl~tgk~v~~L~gH~~~----------------VtsVafSP~dg~lLaSgS~Dg--------------------- 160 (792)
.|++||+.+++.......+... +..+.|+| |+++|++++.|+
T Consensus 173 ~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 173 NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 8999999988766555544332 47899999 999999888765
Q ss_pred ------------eEEEEECCC-CcEEEEe---ccCCCeeEEEEcCCCcEEEEEcC------CeEEEEECCCCCcccCCeE
Q 036953 161 ------------EVRLWDANT-SECIGSC---DFYRPIASIAFHAEGELLAVASG------HKLYIWPYNNKEEASSPII 218 (792)
Q Consensus 161 ------------tVrLWDl~t-g~~v~t~---~h~s~V~sVafSpdG~~LasgSd------d~V~IWDlrt~~~~~~~~~ 218 (792)
.|++||+.+ ++..... .+...+..++| |||++|++++. ..|++||+.+++... .
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~---~ 327 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV---L 327 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE---E
T ss_pred ecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE---E
Confidence 789999998 8766544 35677899999 99999887642 239999998877432 2
Q ss_pred EecCC-C---CeEEEEEccCCCeEEEE
Q 036953 219 VLKTR-R---SLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 219 ~~~h~-~---sVtsVafSPdG~~LlaS 241 (792)
...+. . .+..++|+|||+.++++
T Consensus 328 ~~~~~~~~~~~~~~~~~spdg~~~~~~ 354 (741)
T 2ecf_A 328 AHETSPTWVPLHNSLRFLDDGSILWSS 354 (741)
T ss_dssp EEEECSSCCCCCSCCEECTTSCEEEEE
T ss_pred EEcCCCCcCCcCCceEECCCCeEEEEe
Confidence 22222 2 45688999999944443
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=142.07 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=122.3
Q ss_pred EEEEEeCCCeEEEEeccCCCcC---CCCC---CeEEEEEcCCCCEEEE-EECCCeEEEEECCCCcEEEEecC-C----CC
Q 036953 71 GLVSWVEAESLRHLSAKYCPLV---PPPR---STIAAAFSPDGRTLAS-THGDHTVKIIDCQTGNCLKVLSG-H----RR 138 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L~---gH~~---~V~sLafSPDG~~LaS-GS~DGtVrIWDl~tgk~v~~L~g-H----~~ 138 (792)
.+++...++.|.+||..++++. .... .+..++|+|++++++. +..++.|.+||+.+++.+..+.. + ..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 5677788899999998766321 1222 4788999999987654 45578999999999998877763 2 22
Q ss_pred CcEEEEEccCCCCEEEEEe------------CCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEE
Q 036953 139 TPWVVRFHPLRSEILASGS------------LDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWP 206 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS------------~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWD 206 (792)
.+.+++|+| ++++++++. .++.|.+||+.+++.+..+.....+..++|+|+|++|+++ ++.|++||
T Consensus 83 ~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d 160 (337)
T 1pby_B 83 SLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMD 160 (337)
T ss_dssp CTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEE
T ss_pred cccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEE
Confidence 678899999 888888876 5799999999999988888767778899999999988888 45699999
Q ss_pred CCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 207 YNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 207 lrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
+.+++... ....+. ....+.|+|+++.++++
T Consensus 161 ~~~~~~~~---~~~~~~-~~~~~~~s~dg~~l~~~ 191 (337)
T 1pby_B 161 PEAGTLVE---DKPIQS-WEAETYAQPDVLAVWNQ 191 (337)
T ss_dssp TTTTEEEE---EECSTT-TTTTTBCCCBCCCCCCC
T ss_pred CCCCcEee---eeeccc-cCCCceeCCCccEEeee
Confidence 98876432 111111 01123678888766543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.2e-15 Score=170.13 Aligned_cols=223 Identities=11% Similarity=0.052 Sum_probs=152.7
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cCCCCC---CeEEEEEcCCCCEEEEEEC
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVPPPR---STIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~---~V~sLafSPDG~~LaSGS~ 115 (792)
....++|+|+++++.. ..+++|++|+..+++ +..|.. .|.+++|||||++|++++.
T Consensus 18 ~~~~~~~spdg~~~~~-----------------~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~ 80 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-----------------EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYN 80 (723)
T ss_dssp CCCCCCBSSSSCBCCC-----------------CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEES
T ss_pred cccccEEcCCCcEEEE-----------------eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEec
Confidence 3567889999875432 134567777776553 233443 4899999999999999987
Q ss_pred C---------CeEEEEECCCCcEEEEec---CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecc-CCC-
Q 036953 116 D---------HTVKIIDCQTGNCLKVLS---GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF-YRP- 181 (792)
Q Consensus 116 D---------GtVrIWDl~tgk~v~~L~---gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h-~s~- 181 (792)
+ +.+++||+.+++. ..+. +|...+..++|+| |++.|+.++. ++|++||+.+++....... ...
T Consensus 81 ~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~ 157 (723)
T 1xfd_A 81 VEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV 157 (723)
T ss_dssp CCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT
T ss_pred CccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc
Confidence 4 7888999998875 3343 4555688999999 9999999886 7999999999877665532 222
Q ss_pred -----------------eeEEEEcCCCcEEEEEc-CC----------------------------------eEEEEECCC
Q 036953 182 -----------------IASIAFHAEGELLAVAS-GH----------------------------------KLYIWPYNN 209 (792)
Q Consensus 182 -----------------V~sVafSpdG~~LasgS-dd----------------------------------~V~IWDlrt 209 (792)
+.+++|+|||++|++++ ++ .|++||+.+
T Consensus 158 ~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 37899999999999876 21 599999987
Q ss_pred CCcccCCeEEec------CCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEE
Q 036953 210 KEEASSPIIVLK------TRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSL 283 (792)
Q Consensus 210 ~~~~~~~~~~~~------h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l 283 (792)
++... .+.. +...+..++|+|||+.+++...... ....+.+|+..++....+
T Consensus 238 ~~~~~---~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-------------------~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 238 PTHDL---EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ-------------------NVSILTLCDATTGVCTKK 295 (723)
T ss_dssp SCCCE---ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS-------------------CEEEEEEEETTTCCEEEE
T ss_pred CceeE---EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC-------------------CeEEEEEEeCCCCcceEE
Confidence 76321 1222 2567899999999996655443210 001345566666665544
Q ss_pred eeccCcccCCCceEE----EeEECCCCcEEEEc
Q 036953 284 AAELPLMSSLPFLIV----PSVSIDDSRIDLQH 312 (792)
Q Consensus 284 ~s~l~~l~gh~~~Vw----dV~~SpDGr~lv~~ 312 (792)
.... +...+. .+.|+|||+.|++.
T Consensus 296 ~~~~-----~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 296 HEDE-----SEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp EEEE-----CSSCCCCCCCCCEECTTSCSEEEE
T ss_pred EEec-----cCCEEeccCCCceEcCCCCeEEEE
Confidence 3311 222222 67899999977743
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=160.76 Aligned_cols=245 Identities=12% Similarity=0.115 Sum_probs=159.5
Q ss_pred CceEeeecccceeeC--CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC-----CCc----C
Q 036953 24 RARNVSRLLAHREIS--PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY-----CPL----V 92 (792)
Q Consensus 24 ~~r~V~~l~~~rels--~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t-----~~L----~ 92 (792)
+...+|+....+... .....+...+|+|+++.++.. .++.|.+|+..+ ++. .
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-----------------~~~~i~v~~~~~~~~~~g~~~~~~~ 163 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-----------------RNHNLYIARGGKLGEGMSRAIAVTI 163 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-----------------ETTEEEEEECBCTTSCCCCCEESCS
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-----------------ECCeEEEEecCcccccCCCcEEecc
Confidence 456677765543322 233456667788887655443 235677777665 421 1
Q ss_pred CCCCC--------------eEEEEEcCCCCEEEEEE---------------------------------CCCeEEEEECC
Q 036953 93 PPPRS--------------TIAAAFSPDGRTLASTH---------------------------------GDHTVKIIDCQ 125 (792)
Q Consensus 93 gH~~~--------------V~sLafSPDG~~LaSGS---------------------------------~DGtVrIWDl~ 125 (792)
.+... +.+++|||||++|++++ .+..|++||+.
T Consensus 164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~ 243 (706)
T 2z3z_A 164 DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA 243 (706)
T ss_dssp CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence 22222 47899999999999987 45689999999
Q ss_pred CCcEEEEec--CCCCCcEEEEEccCCCCEEEEEeCCC-----eEEEEECCCCcEEEE-ec--cCC---CeeEEEEcC--C
Q 036953 126 TGNCLKVLS--GHRRTPWVVRFHPLRSEILASGSLDH-----EVRLWDANTSECIGS-CD--FYR---PIASIAFHA--E 190 (792)
Q Consensus 126 tgk~v~~L~--gH~~~VtsVafSP~dg~lLaSgS~Dg-----tVrLWDl~tg~~v~t-~~--h~s---~V~sVafSp--d 190 (792)
+++...... .|...+..++|+| |+++|++++.|+ +|++||+.+++.... .. ... .+..+.|+| +
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 244 TGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN 322 (706)
T ss_dssp TTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS
T ss_pred CCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC
Confidence 887655443 4677899999999 999999888776 899999999843333 32 222 246789999 9
Q ss_pred CcEEEEEcC-CeEEEEECC-CCCcccCCeEEecCCCCeEE-EEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCC
Q 036953 191 GELLAVASG-HKLYIWPYN-NKEEASSPIIVLKTRRSLRA-VHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPP 267 (792)
Q Consensus 191 G~~LasgSd-d~V~IWDlr-t~~~~~~~~~~~~h~~sVts-VafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~ 267 (792)
|++|++++. +.++||++. .++.. ..+..+...+.. ++|+|+++.|++++....-. .
T Consensus 323 g~~l~~~~~~g~~~l~~~~~~~~~~---~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~------------------~ 381 (706)
T 2z3z_A 323 NQFIWQSRRDGWNHLYLYDTTGRLI---RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPL------------------E 381 (706)
T ss_dssp SEEEEEECTTSSCEEEEEETTSCEE---EECCCSSSCEEEEEEECTTSSEEEEEESSSCTT------------------C
T ss_pred CEEEEEEccCCccEEEEEECCCCEE---EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCc------------------e
Confidence 999888874 447777765 33321 233445666776 89999999888877532100 0
Q ss_pred CceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEcccc
Q 036953 268 PAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASR 315 (792)
Q Consensus 268 ~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~ 315 (792)
..++.+....+....+ . +...+..+.|||||+++++....
T Consensus 382 ~~l~~~d~~~~~~~~l-------~-~~~~~~~~~~spdg~~l~~~~~~ 421 (706)
T 2z3z_A 382 RHFYCIDIKGGKTKDL-------T-PESGMHRTQLSPDGSAIIDIFQS 421 (706)
T ss_dssp BEEEEEETTCCCCEES-------C-CSSSEEEEEECTTSSEEEEEEEC
T ss_pred EEEEEEEcCCCCceec-------c-CCCceEEEEECCCCCEEEEEecC
Confidence 1133333333332211 1 44568899999999998844333
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-13 Score=141.44 Aligned_cols=164 Identities=9% Similarity=0.097 Sum_probs=111.1
Q ss_pred CCeEEEEeccCCC------cCCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC-Cc--EEEEecC---------CCC
Q 036953 78 AESLRHLSAKYCP------LVPPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQT-GN--CLKVLSG---------HRR 138 (792)
Q Consensus 78 d~sIrvWd~~t~~------L~gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~t-gk--~v~~L~g---------H~~ 138 (792)
++.|.+|+...+. +..+...+..++|+|||++|++++ .++.|.+||+.. ++ .+..+.. +..
T Consensus 62 ~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~ 141 (347)
T 3hfq_A 62 EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGS 141 (347)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSC
T ss_pred CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCC
Confidence 3456666654332 123566788999999999999888 689999999963 32 2333321 123
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECC-CCcEEEE--e--ccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCC--
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDAN-TSECIGS--C--DFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNN-- 209 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~-tg~~v~t--~--~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt-- 209 (792)
.+.+++|+| +++++++...++.|++||+. +++.... + .....+..++|+|||++|++++ ++.|++|++..
T Consensus 142 ~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~ 220 (347)
T 3hfq_A 142 HIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT 220 (347)
T ss_dssp CEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred CceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 488899999 77777777778999999998 5543322 2 2344678899999999777754 45699999875
Q ss_pred CCcccCCeEEecCC------CCeEEEEEccCCCeEEEEEe
Q 036953 210 KEEASSPIIVLKTR------RSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 210 ~~~~~~~~~~~~h~------~sVtsVafSPdG~~LlaS~s 243 (792)
++... ........ ..+..++|+|||++++++..
T Consensus 221 g~~~~-~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~ 259 (347)
T 3hfq_A 221 GAFTQ-LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR 259 (347)
T ss_dssp TEEEE-EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred CceEE-eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence 32111 11111111 45889999999998877664
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-13 Score=155.21 Aligned_cols=213 Identities=10% Similarity=0.012 Sum_probs=141.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-----C
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-----S 170 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-----g 170 (792)
..|.+++|+|| ++++.+. |+.|++||+.+++... +..+...+..++|+| |++.|+++ .|+.|++||+.+ +
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCC
Confidence 56999999999 6666654 5899999999887554 445777889999999 99999885 689999999998 8
Q ss_pred cEEEEecc-CCC--------------eeEEEEcCCCcEEEEEc---------------------------------C-Ce
Q 036953 171 ECIGSCDF-YRP--------------IASIAFHAEGELLAVAS---------------------------------G-HK 201 (792)
Q Consensus 171 ~~v~t~~h-~s~--------------V~sVafSpdG~~LasgS---------------------------------d-d~ 201 (792)
+....... ... +.++.|+|||++|++++ . ..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 77654432 222 48999999999999886 1 23
Q ss_pred EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee----------CccccCCCceeee--cCC------Ccc
Q 036953 202 LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV----------NDLDSSDSSMTRA--TSP------GYL 263 (792)
Q Consensus 202 V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~----------~dLrs~d~~~~l~--t~s------g~~ 263 (792)
|++||+.+++... ......+...+..++|+|||+.|+++... |++........+. ... ...
T Consensus 237 l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 237 VGIYHLATGKTVY-LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEETTTTEEEE-CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEECCCCceEe-eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 9999998876432 11112355679999999999988876542 2333321111111 111 123
Q ss_pred cCCC--CceEEEEecCCCEEEEee------ccCcccCCCceEEE-eEECCCCcEEEEccc
Q 036953 264 RYPP--PAVFVANAQSGDHVSLAA------ELPLMSSLPFLIVP-SVSIDDSRIDLQHAS 314 (792)
Q Consensus 264 ~~p~--~~~~l~~~ssG~~~~l~s------~l~~l~gh~~~Vwd-V~~SpDGr~lv~~~~ 314 (792)
.|.+ ...+++....+...++.. ....+..+...+.. +.|+|||+.|++...
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~ 375 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST 375 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEES
T ss_pred eeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEec
Confidence 4544 445555554443333322 11234456667776 799999998874443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-12 Score=134.87 Aligned_cols=162 Identities=9% Similarity=0.090 Sum_probs=126.9
Q ss_pred CCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC----CCCCcEEEEEccC
Q 036953 77 EAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG----HRRTPWVVRFHPL 148 (792)
Q Consensus 77 ~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g----H~~~VtsVafSP~ 148 (792)
.++.|.+||..+++ +..+...+.+++|+|++++|++++.++.|.+||+.+++.+..+.. +...+.+++|+|
T Consensus 162 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 240 (353)
T 3vgz_A 162 KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT- 240 (353)
T ss_dssp SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-
T ss_pred CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-
Confidence 46678888876553 223555688999999999999999999999999999998877764 566788999999
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCC
Q 036953 149 RSEILASGS-LDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRS 225 (792)
Q Consensus 149 dg~lLaSgS-~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~s 225 (792)
++++++.++ .++.|.+||+.+++.+..+..... ..++|+|+|++++++. ++.|.+||..+++... .......
T Consensus 241 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~----~~~~~~~ 315 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK----TFDTPTH 315 (353)
T ss_dssp TTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EEECCSE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE----EEecCCC
Confidence 777665555 559999999999998888765443 5799999999766655 5669999998876432 2334457
Q ss_pred eEEEEEccCCCeEEEEEee
Q 036953 226 LRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 226 VtsVafSPdG~~LlaS~s~ 244 (792)
+..++|+|+|++++++...
T Consensus 316 ~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 316 PNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEEECTTSCEEEEEEEC
T ss_pred CCeEEEcCCCCEEEEEEcc
Confidence 8999999999988887764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.5e-13 Score=162.28 Aligned_cols=178 Identities=8% Similarity=-0.006 Sum_probs=142.3
Q ss_pred eeeeEEee-CCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---CcCCCCC-CeEEEEEcCCCCEEEEEECCC
Q 036953 43 YVPKRQWV-DASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---PLVPPPR-STIAAAFSPDGRTLASTHGDH 117 (792)
Q Consensus 43 ~V~s~aWs-pd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---~L~gH~~-~V~sLafSPDG~~LaSGS~DG 117 (792)
.+..+.|+ |+++.++.+ . ++.+.+|+...+ .+..|.. .+..++|+ ||+.|++++.+.
T Consensus 297 ~v~~~~~S~pdG~~la~~----------------~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~ 358 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFV----------------S-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREG 358 (1045)
T ss_dssp GGGEEEEEECGGGCEEEE----------------E-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTE
T ss_pred ccceeeecCCCCCEEEEE----------------E-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCC
Confidence 35667777 776654433 1 456667766544 3456777 89999999 999999999988
Q ss_pred eEE-EEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEE
Q 036953 118 TVK-IIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLA 195 (792)
Q Consensus 118 tVr-IWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~La 195 (792)
.+. +||+.+++.. .+.+|...+..++|+| ++++|++++.++.|++||+.+++....+ .+...+.+++|+|||++|+
T Consensus 359 ~l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la 436 (1045)
T 1k32_A 359 DFLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA 436 (1045)
T ss_dssp EEEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEE
T ss_pred ceEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEE
Confidence 888 9999877654 4448888999999999 9999999999999999999999888777 6788899999999999998
Q ss_pred EEc-CC----------eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 196 VAS-GH----------KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 196 sgS-dd----------~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
+++ ++ .|++||+.+++. .....+...+..++|+|||+.|++.+..
T Consensus 437 ~~~~~~~~~~~~~~~~~i~l~d~~~g~~----~~l~~~~~~~~~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 437 YGFPLKHGETDGYVMQAIHVYDMEGRKI----FAATTENSHDYAPAFDADSKNLYYLSYR 492 (1045)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETTTTEE----EECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred EEecCccccccCCCCCeEEEEECCCCcE----EEeeCCCcccCCceEcCCCCEEEEEecc
Confidence 876 33 599999987652 2345567788999999999988877763
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-13 Score=138.25 Aligned_cols=143 Identities=13% Similarity=0.089 Sum_probs=108.4
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCCcC---CCCC--CeEEEEEcCCCCEEEE-EECCCeEEEEECCCCcEEEEecCC----
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCPLV---PPPR--STIAAAFSPDGRTLAS-THGDHTVKIIDCQTGNCLKVLSGH---- 136 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~L~---gH~~--~V~sLafSPDG~~LaS-GS~DGtVrIWDl~tgk~v~~L~gH---- 136 (792)
.++..+++...++.|.+||..++++. .... .+..++|+|++++++. +..++.|.+||+.+++.+..+..+
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~ 88 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG 88 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc
Confidence 45556777788999999998766321 1222 5789999999987654 456899999999999888777633
Q ss_pred --CCCcEEEEEccCCCCEEEEEeCC------------CeEEEEECCCCc---EEEEeccCCCeeEEEEcCCCcEEEEEcC
Q 036953 137 --RRTPWVVRFHPLRSEILASGSLD------------HEVRLWDANTSE---CIGSCDFYRPIASIAFHAEGELLAVASG 199 (792)
Q Consensus 137 --~~~VtsVafSP~dg~lLaSgS~D------------gtVrLWDl~tg~---~v~t~~h~s~V~sVafSpdG~~LasgSd 199 (792)
...+.+++|+| +++++++++.+ +.|.+||+.+++ .+..+.+...+.+++|+|+|+ +++++.
T Consensus 89 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~ 166 (349)
T 1jmx_B 89 EVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP 166 (349)
T ss_dssp EEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS
T ss_pred cccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC
Confidence 23378899999 88899888865 899999998843 334455556788999999999 555543
Q ss_pred CeEEEEECCCCCc
Q 036953 200 HKLYIWPYNNKEE 212 (792)
Q Consensus 200 d~V~IWDlrt~~~ 212 (792)
.|++||+.+++.
T Consensus 167 -~i~~~d~~~~~~ 178 (349)
T 1jmx_B 167 -DIYKMDVKTGKY 178 (349)
T ss_dssp -SEEEECTTTCCE
T ss_pred -cEEEEeCCCCce
Confidence 399999988764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-12 Score=132.92 Aligned_cols=136 Identities=16% Similarity=0.112 Sum_probs=93.2
Q ss_pred CCCceEeeecccceeeC--CCCc---eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcC----
Q 036953 22 RRRARNVSRLLAHREIS--PKTK---YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLV---- 92 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels--~~tk---~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~---- 92 (792)
..+...+|+....+.+. .... .+..++|+++++.+ +++...++.|.+|+..+++..
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l---------------~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIA---------------YATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEE---------------EEEETTTTEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEE---------------EEEeCCCCeEEEEECCCCCeEeeEE
Confidence 34567788776654433 1122 35666777776532 122233456666766544221
Q ss_pred -CC----CCCeEEEEEcCCCCEEEEEE------------CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEE
Q 036953 93 -PP----PRSTIAAAFSPDGRTLASTH------------GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILAS 155 (792)
Q Consensus 93 -gH----~~~V~sLafSPDG~~LaSGS------------~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaS 155 (792)
++ ...+..++|+|||++|+++. .++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++
T Consensus 74 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~ 151 (337)
T 1pby_B 74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYG 151 (337)
T ss_dssp CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEE
T ss_pred cCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEE
Confidence 11 22577899999999999886 679999999999988877764 45678899999 8887777
Q ss_pred EeCCCeEEEEECCCCcEEEEe
Q 036953 156 GSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 156 gS~DgtVrLWDl~tg~~v~t~ 176 (792)
+ ++.|++||+.+++.+..+
T Consensus 152 ~--~~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 152 L--GRDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp E--SSSEEEEETTTTEEEEEE
T ss_pred e--CCeEEEEECCCCcEeeee
Confidence 7 688999999988776555
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.2e-13 Score=161.50 Aligned_cols=190 Identities=12% Similarity=0.052 Sum_probs=144.1
Q ss_pred CCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCcEEEEecCCCC-CcEEEEEccCCCCEEEEEeCCCeEE-EEECCCCc
Q 036953 95 PRSTIAAAFS-PDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR-TPWVVRFHPLRSEILASGSLDHEVR-LWDANTSE 171 (792)
Q Consensus 95 ~~~V~sLafS-PDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~-~VtsVafSP~dg~lLaSgS~DgtVr-LWDl~tg~ 171 (792)
...+.+++|+ |||++|++++ ++.|.+|++.+++.. .+..|.. .+..++|+ +++.|++++.+..+. +||+.+++
T Consensus 295 ~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 295 IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp CGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCC
T ss_pred ccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCC
Confidence 3468999999 9999999988 789999999877644 4667877 89999999 778888888888888 99998887
Q ss_pred EEEEeccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 172 CIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 172 ~v~t~~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
......+...+..++|+|||++|++++. +.|++||+.+++... ....+...+..++|+|||++|++++...+...
T Consensus 371 ~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~---~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~- 446 (1045)
T 1k32_A 371 AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNSRFIAYGFPLKHGET- 446 (1045)
T ss_dssp EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTSCEEEEEEEECSSTT-
T ss_pred ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE---eccCCCCCccceEECCCCCeEEEEecCccccc-
Confidence 6555566678999999999999998885 469999998876432 33367788899999999998877765321000
Q ss_pred CCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEE
Q 036953 251 DSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQ 311 (792)
Q Consensus 251 d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~ 311 (792)
.......+++|+...+.... +..|...+..+.|+|||+.|++
T Consensus 447 ------------~~~~~~~i~l~d~~~g~~~~-------l~~~~~~~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 447 ------------DGYVMQAIHVYDMEGRKIFA-------ATTENSHDYAPAFDADSKNLYY 488 (1045)
T ss_dssp ------------CSCCEEEEEEEETTTTEEEE-------CSCSSSBEEEEEECTTSCEEEE
T ss_pred ------------cCCCCCeEEEEECCCCcEEE-------eeCCCcccCCceEcCCCCEEEE
Confidence 00111246667665554222 2236777889999999999883
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-12 Score=134.65 Aligned_cols=148 Identities=12% Similarity=0.163 Sum_probs=104.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCc--EEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEEC
Q 036953 94 PPRSTIAAAFSPDGRTLASTHG---DHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRLWDA 167 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~---DGtVrIWDl~tgk--~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrLWDl 167 (792)
+...+..++|+|||+ |++++. ++.|++||+.+++ .+..+..+...+..++|+| ++++|++++ .+++|++||+
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEe
Confidence 445677899999999 655554 6899999997765 3445456778899999999 888888877 7899999999
Q ss_pred CC-Cc--EEEEeccC----------CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeE-EecCCCCeEEEEEc
Q 036953 168 NT-SE--CIGSCDFY----------RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPII-VLKTRRSLRAVHFH 232 (792)
Q Consensus 168 ~t-g~--~v~t~~h~----------s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~-~~~h~~sVtsVafS 232 (792)
.. ++ .+..+... ..+.+++|+|+|+++++.. ++.|++||+........... ..........++|+
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s 195 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS 195 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence 63 32 33333221 2488899999999555554 45699999983322210111 12233467889999
Q ss_pred cCCCeEEEEEe
Q 036953 233 PHAAPFVLTAE 243 (792)
Q Consensus 233 PdG~~LlaS~s 243 (792)
|||+++++++.
T Consensus 196 pdg~~l~v~~~ 206 (347)
T 3hfq_A 196 PDGQYAFLAGE 206 (347)
T ss_dssp TTSSEEEEEET
T ss_pred CCCCEEEEEeC
Confidence 99998777653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=160.93 Aligned_cols=211 Identities=9% Similarity=0.051 Sum_probs=143.1
Q ss_pred CCceEeeecccceeeCCCCc------eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc---CC
Q 036953 23 RRARNVSRLLAHREISPKTK------YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL---VP 93 (792)
Q Consensus 23 s~~r~V~~l~~~rels~~tk------~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L---~g 93 (792)
.+...+|+....+....... .+...+|+|+++.++.+... ...|..+.++.|++|+..+++. ..
T Consensus 35 d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~-------~~~~~~s~~~~i~~~d~~~g~~~~~~~ 107 (719)
T 1z68_A 35 DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDY-------SKLWRYSYTATYYIYDLSNGEFVRGNE 107 (719)
T ss_dssp TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEE-------EECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecC-------ceeEEeecceEEEEEECCCCcccccee
Confidence 45677888766544332221 27789999999877655210 0111112356799999887765 44
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEe-cCCCCCc-----------------EEEEEccCCCCEEEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVL-SGHRRTP-----------------WVVRFHPLRSEILAS 155 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L-~gH~~~V-----------------tsVafSP~dg~lLaS 155 (792)
....+..++|||||++|+++. |+.|++||+.+++..... .++...| .+++|+| |+++|++
T Consensus 108 l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~ 185 (719)
T 1z68_A 108 LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAY 185 (719)
T ss_dssp CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEE
T ss_pred cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEE
Confidence 456789999999999999986 779999999888765433 2333222 4899999 9999999
Q ss_pred EeCCC----------------------------------eEEEEECCCCcEE---EE-----e-ccCCCeeEEEEcCCCc
Q 036953 156 GSLDH----------------------------------EVRLWDANTSECI---GS-----C-DFYRPIASIAFHAEGE 192 (792)
Q Consensus 156 gS~Dg----------------------------------tVrLWDl~tg~~v---~t-----~-~h~s~V~sVafSpdG~ 192 (792)
++.|. +|++||+.+++.. .. + .+...+..++|+||++
T Consensus 186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~ 265 (719)
T 1z68_A 186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER 265 (719)
T ss_dssp EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE
T ss_pred EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe
Confidence 88652 7899999987642 21 1 3566789999999988
Q ss_pred EEEEEcC---C--eEEEEE----CCCCCcccCCe-EEecCCCCeE-----EEEEccCCCeEEEEE
Q 036953 193 LLAVASG---H--KLYIWP----YNNKEEASSPI-IVLKTRRSLR-----AVHFHPHAAPFVLTA 242 (792)
Q Consensus 193 ~LasgSd---d--~V~IWD----lrt~~~~~~~~-~~~~h~~sVt-----sVafSPdG~~LlaS~ 242 (792)
++++..+ + .|++|| ..+++...... ....+...+. .+.|+|||+.++...
T Consensus 266 ~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 266 VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence 7777442 1 289999 76665433110 0134555565 789999999877643
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-11 Score=129.95 Aligned_cols=179 Identities=11% Similarity=0.022 Sum_probs=125.6
Q ss_pred EEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 036953 47 RQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKII 122 (792)
Q Consensus 47 ~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIW 122 (792)
.+|+|+++.++.... .++.. .|.+|+..++. ..++...+..++|+|||++|+.++.++.|++|
T Consensus 41 ~~~SpDg~~l~~~~~----~~g~~---------~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~ 107 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGA----FDGPW---------NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRV 107 (388)
T ss_dssp CCBCTTSCEEEEEEC----TTSSC---------EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEE
T ss_pred ccCCCCCCEEEEEEc----CCCCc---------eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEE
Confidence 678888876544321 01122 34455554432 23444455567899999999999999999999
Q ss_pred ECCCCcEEEEecCCCCCcEEEEE--ccCCCCEEEEE----------------------eCCCeEEEEECCCCcEEEEecc
Q 036953 123 DCQTGNCLKVLSGHRRTPWVVRF--HPLRSEILASG----------------------SLDHEVRLWDANTSECIGSCDF 178 (792)
Q Consensus 123 Dl~tgk~v~~L~gH~~~VtsVaf--SP~dg~lLaSg----------------------S~DgtVrLWDl~tg~~v~t~~h 178 (792)
|+.+++....+..+...+....| ++ ++++++.. ..+..|.+||+.+++......+
T Consensus 108 d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 186 (388)
T 3pe7_A 108 DLATLEENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE 186 (388)
T ss_dssp ETTTCCEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE
T ss_pred ECCCCcceeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC
Confidence 99999887777767665654444 78 78887743 2346799999999987777777
Q ss_pred CCCeeEEEEcC-CCcEEEEEcCC-------eEEEEECCCCCcccCCeEEecCC--CCeEEEEEccCCCeEEEEEe
Q 036953 179 YRPIASIAFHA-EGELLAVASGH-------KLYIWPYNNKEEASSPIIVLKTR--RSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 179 ~s~V~sVafSp-dG~~LasgSdd-------~V~IWDlrt~~~~~~~~~~~~h~--~sVtsVafSPdG~~LlaS~s 243 (792)
...+..+.|+| ||+.|+....+ .|++||....+.. .+..+. ..+..+.|+|||+.|+..+.
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 187 NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR----KVKTHAEGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE----ESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE----EeeeCCCCcccccceECCCCCEEEEEec
Confidence 78899999999 99988876632 4888888665422 222333 35788999999998876544
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.44 E-value=8.4e-12 Score=142.14 Aligned_cols=242 Identities=12% Similarity=0.030 Sum_probs=148.6
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---CcCCCC-CCeEEEEEcCCCCEEEEEEC---
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---PLVPPP-RSTIAAAFSPDGRTLASTHG--- 115 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---~L~gH~-~~V~sLafSPDG~~LaSGS~--- 115 (792)
.+..++|++|++.++.+. ..++++++|+...+ ++..|. ..+..++|+|| +.+++++.
T Consensus 23 ~~~~~~~~~DG~~la~~s---------------~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g 86 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVG---------------FSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKG 86 (582)
T ss_dssp CEEEEEEEETTTEEEEEE---------------EETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTT
T ss_pred chheeecCCCCCeEEEEE---------------ccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCC
Confidence 578888999887665431 12555666665433 344555 57999999999 77777775
Q ss_pred CCeEEEEECCC---CcEEEEecCCCCCcEEEEEccCCCC-EEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCC
Q 036953 116 DHTVKIIDCQT---GNCLKVLSGHRRTPWVVRFHPLRSE-ILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEG 191 (792)
Q Consensus 116 DGtVrIWDl~t---gk~v~~L~gH~~~VtsVafSP~dg~-lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG 191 (792)
+...+||.+.. ++.. .+... ..+...+|+| +++ ++++.+.++.+.+||+.+++......+.. .+++|+|||
T Consensus 87 ~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG 161 (582)
T 3o4h_A 87 AEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRG 161 (582)
T ss_dssp SCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEET
T ss_pred CcceEEEEEeccCCCccc-cccCC-CCceeeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCC
Confidence 45566665433 3322 44322 2355678888 553 44444444555699999988766665444 899999999
Q ss_pred cEEEEEcC-----CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC--ccccCCC---ce-eeecCC
Q 036953 192 ELLAVASG-----HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN--DLDSSDS---SM-TRATSP 260 (792)
Q Consensus 192 ~~LasgSd-----d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~--dLrs~d~---~~-~l~t~s 260 (792)
++|++++. ..|++||+.+++. ..+..+...+..++|+|||+.|+.+.... .|..++. .. .+....
T Consensus 162 ~~la~~~~~~~~~~~i~~~d~~~g~~----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 237 (582)
T 3o4h_A 162 DLIAGLGFFGGGRVSLFTSNLSSGGL----RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPS 237 (582)
T ss_dssp TEEEEEEEEETTEEEEEEEETTTCCC----EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSC
T ss_pred CEEEEEEEcCCCCeEEEEEcCCCCCc----eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCC
Confidence 99997763 2399999988764 24566778899999999999888444332 2332221 11 111111
Q ss_pred C---ccc--------CCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 261 G---YLR--------YPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 261 g---~~~--------~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
. ... |.+....++....+....+..--.........|.+++|+ ||++++
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~g~~~~~~~~~v~~~~~s-dg~~l~ 297 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDGERVEAPQGNHGRVVLW-RGKLVT 297 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEETTEEECCCSSEEEEEEEE-TTEEEE
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEECCeeccCCCceEEEEec-CCEEEE
Confidence 1 122 544443334334444444443101111345678899999 998887
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-13 Score=155.48 Aligned_cols=206 Identities=15% Similarity=0.226 Sum_probs=136.3
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCC---CcEEEEEccCCCCEEEEEeC---------CCeEEEEEC
Q 036953 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR---TPWVVRFHPLRSEILASGSL---------DHEVRLWDA 167 (792)
Q Consensus 100 sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~---~VtsVafSP~dg~lLaSgS~---------DgtVrLWDl 167 (792)
+++|+|||++++ .+.|++|++||+.+++....+.+|.. .+.+++|+| |+++|++++. |++|++||+
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEEC
Confidence 779999995444 55799999999999998877765543 489999999 9999998876 789999999
Q ss_pred CCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCe-----------------EEEE
Q 036953 168 NTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSL-----------------RAVH 230 (792)
Q Consensus 168 ~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sV-----------------tsVa 230 (792)
.+++.+........+..++|+|||+.|+.+.++.|++||+.+++... ....++...| .+++
T Consensus 98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~--l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQ--ITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEE--CCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEE--EecCCCcCCeEcccccceeeeecccCcccEE
Confidence 99876322223456889999999999999998889999998776432 1111122212 4899
Q ss_pred EccCCCeEEEEEeeC-ccccC-----CC---c--eeee-cCCCcccCCCCceEEEEecCCCEE---EEeeccCcccCCCc
Q 036953 231 FHPHAAPFVLTAEVN-DLDSS-----DS---S--MTRA-TSPGYLRYPPPAVFVANAQSGDHV---SLAAELPLMSSLPF 295 (792)
Q Consensus 231 fSPdG~~LlaS~s~~-dLrs~-----d~---~--~~l~-t~sg~~~~p~~~~~l~~~ssG~~~---~l~s~l~~l~gh~~ 295 (792)
|+|||+.|+++..+. .+..+ .. . ..+. ...|. ..+...+.+++...+..+ .+.. ...+.+|..
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~-~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~ 253 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA-KNPVVRIFIIDTTYPAYVGPQEVPV-PAMIASSDY 253 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS-CCCEEEEEEEESSCHHHHCCEECCC-CHHHHTSCE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC-CCCeeEEEEEECCCCCccceeEccC-CccCCCCcc
Confidence 999999888776542 11100 00 0 0000 00000 001113445554443321 2111 012346888
Q ss_pred eEEEeEECCCCcEEEE
Q 036953 296 LIVPSVSIDDSRIDLQ 311 (792)
Q Consensus 296 ~VwdV~~SpDGr~lv~ 311 (792)
.+..+.|||||++++.
T Consensus 254 ~~~~~~~SpD~~~~~~ 269 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQ 269 (719)
T ss_dssp EEEEEEESSSSEEEEE
T ss_pred eEEEeEEeCCCeEEEE
Confidence 9999999999987773
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-12 Score=150.97 Aligned_cols=206 Identities=14% Similarity=0.140 Sum_probs=141.2
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCC-----cEEEEEccCCCCEEEEEeCC---------CeEE
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRT-----PWVVRFHPLRSEILASGSLD---------HEVR 163 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~-----VtsVafSP~dg~lLaSgS~D---------gtVr 163 (792)
..+++|+|||++++++ |++|++||+.++++...+.+|... ...+.|+| |+++|+.++.+ +.+.
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEEE
Confidence 5588999999988886 999999999999988888877643 24478999 99999998876 4567
Q ss_pred EEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCe-----------------
Q 036953 164 LWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSL----------------- 226 (792)
Q Consensus 164 LWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sV----------------- 226 (792)
+||+.+++......+...+..++|||||+.|+.+.++.|++||+.+++... +...++...+
T Consensus 96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~--lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR--ITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE--CCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE--EcCCCCccceecCcccccccchhcCCC
Confidence 999999987655556778999999999999999998889999998776432 1111122222
Q ss_pred EEEEEccCCCeEEEEEeeCc-cccCCCc------------eeeec-CCCcccCCCCceEEEEecC---C---CEEEEeec
Q 036953 227 RAVHFHPHAAPFVLTAEVND-LDSSDSS------------MTRAT-SPGYLRYPPPAVFVANAQS---G---DHVSLAAE 286 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~d-Lrs~d~~------------~~l~t-~sg~~~~p~~~~~l~~~ss---G---~~~~l~s~ 286 (792)
..+.|+|||+.|+....+.. ++.+... ..+.- ..|.. .+...+.+++... + ..+.+...
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~-~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV-NPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC-CCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc-CCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 35899999998887765332 2211100 00000 01100 0111356667666 5 34444321
Q ss_pred cCcccCCCceEEEeEECCCCcEEE
Q 036953 287 LPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 287 l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
..+.++...+..+.|||||+.++
T Consensus 253 -~~~~~~~~~~~~~~wspdg~~~~ 275 (740)
T 4a5s_A 253 -ASMLIGDHYLCDVTWATQERISL 275 (740)
T ss_dssp -HHHHTSCEEEEEEEEEETTEEEE
T ss_pred -ccCCCCCeEEEEEEEeCCCeEEE
Confidence 11224788999999999999776
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.2e-11 Score=125.90 Aligned_cols=147 Identities=10% Similarity=0.171 Sum_probs=100.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEE------ecC--------CCCCcEEEEEccCCCCEEEEEe-
Q 036953 94 PPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKV------LSG--------HRRTPWVVRFHPLRSEILASGS- 157 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~------L~g--------H~~~VtsVafSP~dg~lLaSgS- 157 (792)
+......+++ ++++|++++ .++.|.+|++.....+.. ..+ +...+.+++|+| ++++++.++
T Consensus 98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~ 174 (361)
T 3scy_A 98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDL 174 (361)
T ss_dssp SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEET
T ss_pred CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeC
Confidence 4456778888 888888877 578999999975432211 111 123357899999 888665554
Q ss_pred CCCeEEEEECCCCc-------E-------EEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEe-
Q 036953 158 LDHEVRLWDANTSE-------C-------IGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVL- 220 (792)
Q Consensus 158 ~DgtVrLWDl~tg~-------~-------v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~- 220 (792)
.++.|++|++.... . ............++|+|+|++|++++ ++.|.+||+.+++... .....
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~-~~~~~~ 253 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE-IQTVAA 253 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE-EEEEES
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE-eEEEec
Confidence 58899999887533 1 22234566788999999999887776 5669999998654221 11111
Q ss_pred --cCCCCeEEEEEccCCCeEEEEEee
Q 036953 221 --KTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 221 --~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
.+......++|+|||++|+++...
T Consensus 254 ~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 254 DTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp CSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred CCCCCCCcccEEECCCCCEEEEECCC
Confidence 123457899999999988776643
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-11 Score=128.32 Aligned_cols=202 Identities=12% Similarity=0.106 Sum_probs=133.2
Q ss_pred CCCceEeeecccceeeCC--CCc--eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc----C-
Q 036953 22 RRRARNVSRLLAHREISP--KTK--YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL----V- 92 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels~--~tk--~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L----~- 92 (792)
..+...+|+....+.+.. ... ....++|+++++.+ +++...++.|.+|+..+++. .
T Consensus 19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~---------------~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTA---------------YVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEE---------------EEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEE---------------EEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 456677887765543321 111 34555666665432 12223456677777665422 1
Q ss_pred CC-----CCCeEEEEEcCCCCEEEEEECC------------CeEEEEECCCCc---EEEEecCCCCCcEEEEEccCCCCE
Q 036953 93 PP-----PRSTIAAAFSPDGRTLASTHGD------------HTVKIIDCQTGN---CLKVLSGHRRTPWVVRFHPLRSEI 152 (792)
Q Consensus 93 gH-----~~~V~sLafSPDG~~LaSGS~D------------GtVrIWDl~tgk---~v~~L~gH~~~VtsVafSP~dg~l 152 (792)
.+ ...+..++|+|||++|++++.+ +.|.+||+.+++ .+..+. +...+.+++|+| +++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~- 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGS- 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSC-
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC-CCc-
Confidence 12 2237889999999999998865 899999998854 334444 334688999999 777
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeccCC----------------------------------------------------
Q 036953 153 LASGSLDHEVRLWDANTSECIGSCDFYR---------------------------------------------------- 180 (792)
Q Consensus 153 LaSgS~DgtVrLWDl~tg~~v~t~~h~s---------------------------------------------------- 180 (792)
++.++ +.|++||+.+++.+..+....
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 55544 349999999988776653221
Q ss_pred -----------------CeeEEEEcC-CCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 181 -----------------PIASIAFHA-EGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 181 -----------------~V~sVafSp-dG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
.+..++|+| ++++++++ ++.|++||+.+++... .......+.+++|+|++++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIK----AANLDHTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEE----EEECSSCCCEEEECSSSSCEEEES
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEE----EEcCCCCccceEECCCCCEEEEec
Confidence 345677889 99999988 6779999998876432 222344577999999999888754
Q ss_pred eeCccc
Q 036953 243 EVNDLD 248 (792)
Q Consensus 243 s~~dLr 248 (792)
....+.
T Consensus 314 ~~~~v~ 319 (349)
T 1jmx_B 314 TFNDLA 319 (349)
T ss_dssp BSSEEE
T ss_pred CCCeEE
Confidence 433333
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-11 Score=145.37 Aligned_cols=176 Identities=14% Similarity=0.114 Sum_probs=122.6
Q ss_pred eeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cCCCCC-----CeEEEEEcCCCCEEEEEE
Q 036953 44 VPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVPPPR-----STIAAAFSPDGRTLASTH 114 (792)
Q Consensus 44 V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~-----~V~sLafSPDG~~LaSGS 114 (792)
...+.|++++.++.++ ++.|++|+..+++ +.+|.. ....++|||||++|++++
T Consensus 19 ~~~~~w~~dg~~~~~~------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~ 80 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------------------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEY 80 (740)
T ss_dssp CCCEEECSSSEEEEEE------------------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEE
T ss_pred ccccEECCCCcEEEEc------------------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEE
Confidence 4577888887544322 4667777766542 233332 234589999999999998
Q ss_pred CC---------CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--cCCCe-
Q 036953 115 GD---------HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD--FYRPI- 182 (792)
Q Consensus 115 ~D---------GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~--h~s~V- 182 (792)
.+ +.+.+||+.+++.. .+..|.+.+..++|+| |++.|+.+. |+.|++||+.+++...... ....+
T Consensus 81 ~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~ 157 (740)
T 4a5s_A 81 NYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIY 157 (740)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred CCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcccee
Confidence 76 56679999998754 4667888999999999 999998884 7899999999887654321 21212
Q ss_pred ----------------eEEEEcCCCcEEEEEc-C-C-----------------------------------eEEEEECCC
Q 036953 183 ----------------ASIAFHAEGELLAVAS-G-H-----------------------------------KLYIWPYNN 209 (792)
Q Consensus 183 ----------------~sVafSpdG~~LasgS-d-d-----------------------------------~V~IWDlrt 209 (792)
..+.|||||++|+..+ + . .|++||+.+
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~ 237 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS 237 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence 3589999999998874 1 1 378889887
Q ss_pred ---CCcccCCeEEe------cCCCCeEEEEEccCCCeEEEE
Q 036953 210 ---KEEASSPIIVL------KTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 210 ---~~~~~~~~~~~------~h~~sVtsVafSPdG~~LlaS 241 (792)
++... ...+. .+...+..++|+|||+.++..
T Consensus 238 ~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 238 LSSVTNAT-SIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp CCSSSCCC-EEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCCcce-EEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 63211 11122 256678999999999955543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.5e-12 Score=144.40 Aligned_cols=180 Identities=11% Similarity=0.053 Sum_probs=125.5
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCcEEEEecCCC-CCcEEEEEccCCCCEEEEEeC---CCeEEEEECCC
Q 036953 95 PRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQTGNCLKVLSGHR-RTPWVVRFHPLRSEILASGSL---DHEVRLWDANT 169 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~-DGtVrIWDl~tgk~v~~L~gH~-~~VtsVafSP~dg~lLaSgS~---DgtVrLWDl~t 169 (792)
...|++++|+|||++|++++. ||+++||++.+++. ..+..|. ..+..+.|+| | +++++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCC-C-eEEEEeccCCCCcceEEEEEec
Confidence 446999999999999999887 99999999976655 4455555 6899999999 6 78887775 45556654432
Q ss_pred ---CcEEEEeccCCCeeEEEEcCCCc--EEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 170 ---SECIGSCDFYRPIASIAFHAEGE--LLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 170 ---g~~v~t~~h~s~V~sVafSpdG~--~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
+... .+.....+...+|+|+|+ .+++++++.+.+||+.+++... ...+.. .+++|+|||+.+++++.+
T Consensus 98 ~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~----l~~~~~--~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 98 SRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE----LARLPG--FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp TSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE----EEEESS--CEEEEEEETTEEEEEEEE
T ss_pred cCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE----eecCCC--ceEEECCCCCEEEEEEEc
Confidence 2222 443334455678888885 4455556667799998776332 222222 789999999988876654
Q ss_pred CccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 245 NDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 245 ~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
..- ...+++++..++..+.+. +|...+..+.|||||+.|+
T Consensus 171 ~~~-------------------~~~i~~~d~~~g~~~~l~-------~~~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 171 GGG-------------------RVSLFTSNLSSGGLRVFD-------SGEGSFSSASISPGMKVTA 210 (582)
T ss_dssp ETT-------------------EEEEEEEETTTCCCEEEC-------CSSCEEEEEEECTTSCEEE
T ss_pred CCC-------------------CeEEEEEcCCCCCceEee-------cCCCccccceECCCCCEEE
Confidence 210 012566665666655443 3778899999999999998
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-10 Score=125.68 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=105.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCcEEEEecC-CCCCcEEEEEccCCCCE--EEEEe-------------C
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQ-TGNCLKVLSG-HRRTPWVVRFHPLRSEI--LASGS-------------L 158 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~-tgk~v~~L~g-H~~~VtsVafSP~dg~l--LaSgS-------------~ 158 (792)
..+..++|+|||++|++++.+ .|.+||+. +++....... ..+.+..++|+| ++++ ++++. .
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 457889999999999999988 99999997 7776543321 113366789999 8884 44553 6
Q ss_pred CCeEEEEECC-CCcEEEEec-----cCCCeeEEEEcCCCcEEEEEc--CCeEEEEECC-CCCcccCCeEEe--cCCCCeE
Q 036953 159 DHEVRLWDAN-TSECIGSCD-----FYRPIASIAFHAEGELLAVAS--GHKLYIWPYN-NKEEASSPIIVL--KTRRSLR 227 (792)
Q Consensus 159 DgtVrLWDl~-tg~~v~t~~-----h~s~V~sVafSpdG~~LasgS--dd~V~IWDlr-t~~~~~~~~~~~--~h~~sVt 227 (792)
++++++|++. +++....+. +...+.+++|+|+|++|+++. ++.|++||+. +++... ..... .+...+.
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL-VGSVDAPDPGDHPR 196 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE-EEEEECSSTTCCEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE-eeeEecCCCCCCCC
Confidence 8999999997 465544332 456799999999999888775 4569999998 554321 11111 1356789
Q ss_pred EEEEccCCCeEEEEEe
Q 036953 228 AVHFHPHAAPFVLTAE 243 (792)
Q Consensus 228 sVafSPdG~~LlaS~s 243 (792)
.++|+|+|++++++..
T Consensus 197 ~~~~spdg~~l~v~~~ 212 (365)
T 1jof_A 197 WVAMHPTGNYLYALME 212 (365)
T ss_dssp EEEECTTSSEEEEEET
T ss_pred EeEECCCCCEEEEEEC
Confidence 9999999998877654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=9.3e-11 Score=125.98 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCE--EEEEE-------------CCCeEEEEECC-CCcEEEEec----CCCCCcEEEEEccCCCCEEEEEe
Q 036953 98 TIAAAFSPDGRT--LASTH-------------GDHTVKIIDCQ-TGNCLKVLS----GHRRTPWVVRFHPLRSEILASGS 157 (792)
Q Consensus 98 V~sLafSPDG~~--LaSGS-------------~DGtVrIWDl~-tgk~v~~L~----gH~~~VtsVafSP~dg~lLaSgS 157 (792)
+..++|+|||++ +++++ .++++.+|++. .++....+. .+...+.+++|+| ++++++++.
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~ 163 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSAD 163 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEE
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEc
Confidence 456899999995 44543 68999999997 466544443 2556799999999 888887765
Q ss_pred C-CCeEEEEECC-CCcEE--EEec---cCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCC--CCccc--CCeEEec---
Q 036953 158 L-DHEVRLWDAN-TSECI--GSCD---FYRPIASIAFHAEGELLAVAS--GHKLYIWPYNN--KEEAS--SPIIVLK--- 221 (792)
Q Consensus 158 ~-DgtVrLWDl~-tg~~v--~t~~---h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt--~~~~~--~~~~~~~--- 221 (792)
. ++.|++||+. +++.. ..+. +...+..++|+|+|++|++++ ++.|.+|+++. ++... .......
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 4 6899999998 67653 2332 356789999999999988876 45699998753 33210 0011111
Q ss_pred --CCC------CeEEEE-EccCCCeEEEEEee
Q 036953 222 --TRR------SLRAVH-FHPHAAPFVLTAEV 244 (792)
Q Consensus 222 --h~~------sVtsVa-fSPdG~~LlaS~s~ 244 (792)
+.. .+..++ |+|||++|+++...
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCC
Confidence 111 488999 99999988776643
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-09 Score=115.04 Aligned_cols=249 Identities=14% Similarity=0.107 Sum_probs=158.1
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeec---CCcEEEE-----EeCCCeEEEEeccCCCc-----CCCCCCeEEEEEcCC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRD---AKRGLVS-----WVEAESLRHLSAKYCPL-----VPPPRSTIAAAFSPD 106 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d---~~~~L~S-----~s~d~sIrvWd~~t~~L-----~gH~~~V~sLafSPD 106 (792)
.-..+..++++++++++.+......+.. ....++. ...++.|.+|+..++++ .++-.....++++++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 3456888899999887655432211100 0000000 00234566776654432 234557899999999
Q ss_pred CCEEEEEECCCeEEEEECCCCc-EEEEe---------cCCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcEEEE
Q 036953 107 GRTLASTHGDHTVKIIDCQTGN-CLKVL---------SGHRRTPWVVRFHPLRSEILASGS-LDHEVRLWDANTSECIGS 175 (792)
Q Consensus 107 G~~LaSGS~DGtVrIWDl~tgk-~v~~L---------~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrLWDl~tg~~v~t 175 (792)
|+.+++...++.|++||..... .+..+ .++...+.+++|+|+++.++++.+ .++.|++|| .+++.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 9988888889999999986542 45555 345557899999986678888886 699999999 56777777
Q ss_pred eccC-----------CCeeEEEEcCC-CcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 176 CDFY-----------RPIASIAFHAE-GELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 176 ~~h~-----------s~V~sVafSpd-G~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+... .....++++++ +.++++.. +++|++||..+++... ......+...+..++|+| +. ++...
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~p-g~-~~~~~ 257 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-EIKHASFGRNVFAISYIP-GF-LFAVN 257 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECCTTTTTCEEEEEEET-TE-EEEEE
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE-EEeccccCCCcceeeecC-CE-EEEeC
Confidence 6421 23789999999 66666555 5569999998666432 111123456788999999 43 33333
Q ss_pred eeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 243 EVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 243 s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+. +...+ .....++++...+|..+..... ..++-...+.++++|||++++
T Consensus 258 g~--~~v~~-------------~~~~~v~~~~~~~g~~~~~~~~---~~~~~~~p~~ia~~~dG~lyv 307 (329)
T 3fvz_A 258 GK--PYFGD-------------QEPVQGFVMNFSSGEIIDVFKP---VRKHFDMPHDIVASEDGTVYI 307 (329)
T ss_dssp CC--CCTTC-------------SCCCCEEEEETTTCCEEEEECC---SSSCCSSEEEEEECTTSEEEE
T ss_pred CC--EEecc-------------CCCcEEEEEEcCCCeEEEEEcC---CCCccCCeeEEEECCCCCEEE
Confidence 21 11111 1122455666566666555431 133567789999999997777
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-10 Score=120.15 Aligned_cols=169 Identities=11% Similarity=0.095 Sum_probs=115.2
Q ss_pred EEEEe-CCCeEEEEeccCC-CcC-----------------CCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCc---
Q 036953 72 LVSWV-EAESLRHLSAKYC-PLV-----------------PPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGN--- 128 (792)
Q Consensus 72 L~S~s-~d~sIrvWd~~t~-~L~-----------------gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk--- 128 (792)
++... .++.+.+|+.... .+. .+...+.+++|+|||++|++++ .++.|++|++....
T Consensus 112 l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~ 191 (361)
T 3scy_A 112 IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANAD 191 (361)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcc
Confidence 44444 5678899987532 111 1122358899999999777665 47899999887543
Q ss_pred ----E------EEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcEE--EEec----cCCCeeEEEEcCCC
Q 036953 129 ----C------LKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRLWDANTSECI--GSCD----FYRPIASIAFHAEG 191 (792)
Q Consensus 129 ----~------v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrLWDl~tg~~v--~t~~----h~s~V~sVafSpdG 191 (792)
. ......+...+..++|+| ++++++.++ .+++|.+||+.+++.. ..+. +......++|+|||
T Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg 270 (361)
T 3scy_A 192 NKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG 270 (361)
T ss_dssp TCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS
T ss_pred cccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCC
Confidence 1 111223456688999999 888777766 6899999999877542 2221 23457899999999
Q ss_pred cEEEEEc-C--CeEEEEECCC--CCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 192 ELLAVAS-G--HKLYIWPYNN--KEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 192 ~~LasgS-d--d~V~IWDlrt--~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
++|+++. + +.|.+|++.. ++.. ..........+..++|+|+|++|++++.
T Consensus 271 ~~l~v~~~~~~~~i~v~~~~~~~g~~~--~~~~~~~g~~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 271 KYLYASNRLKADGVAIFKVDETNGTLT--KVGYQLTGIHPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp SEEEEEECSSSCEEEEEEECTTTCCEE--EEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred CEEEEECCCCCCEEEEEEEcCCCCcEE--EeeEecCCCCCceEEECCCCCEEEEEEC
Confidence 9987766 3 4599999963 3311 1112222456789999999998887774
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-10 Score=123.41 Aligned_cols=192 Identities=14% Similarity=0.101 Sum_probs=132.5
Q ss_pred cCCCCCCeEE-----EEEcCCCCEEEEEEC-CC--eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeE
Q 036953 91 LVPPPRSTIA-----AAFSPDGRTLASTHG-DH--TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162 (792)
Q Consensus 91 L~gH~~~V~s-----LafSPDG~~LaSGS~-DG--tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtV 162 (792)
+..|...... .+|+|||++|+.++. ++ .|.+||+.+++......++...+..+.|+| +++.|+.++.++.|
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l 104 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNL 104 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEEETTTEE
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeE
Confidence 3344444554 789999999999987 66 488889999988777777776666788999 99999999999999
Q ss_pred EEEECCCCcEEEEeccC-CCeeEE--EEcCCCcEEEEEc-----------------------CCeEEEEECCCCCcccCC
Q 036953 163 RLWDANTSECIGSCDFY-RPIASI--AFHAEGELLAVAS-----------------------GHKLYIWPYNNKEEASSP 216 (792)
Q Consensus 163 rLWDl~tg~~v~t~~h~-s~V~sV--afSpdG~~LasgS-----------------------dd~V~IWDlrt~~~~~~~ 216 (792)
++||+.+++....+... ..+... .+++++++++... +..|++||+.+++..
T Consensus 105 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~--- 181 (388)
T 3pe7_A 105 MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST--- 181 (388)
T ss_dssp EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE---
T ss_pred EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE---
Confidence 99999999877666433 333333 3489999887421 234999999887632
Q ss_pred eEEecCCCCeEEEEEcc-CCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCC-
Q 036953 217 IIVLKTRRSLRAVHFHP-HAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLP- 294 (792)
Q Consensus 217 ~~~~~h~~sVtsVafSP-dG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~- 294 (792)
....+...+..+.|+| ||+.|+.+.... .+. ....+.++....+....+.. ...
T Consensus 182 -~l~~~~~~~~~~~~sp~dg~~l~~~~~~~----~~~-------------~~~~l~~~d~~~~~~~~l~~------~~~~ 237 (388)
T 3pe7_A 182 -VILQENQWLGHPIYRPYDDSTVAFCHEGP----HDL-------------VDARMWLINEDGTNMRKVKT------HAEG 237 (388)
T ss_dssp -EEEEESSCEEEEEEETTEEEEEEEEECSC----TTT-------------SSCSEEEEETTSCCCEESCC------CCTT
T ss_pred -EeecCCccccccEECCCCCCEEEEEEecC----CCC-------------CcceEEEEeCCCCceEEeee------CCCC
Confidence 3445667789999999 999887766421 000 01123333333333333222 122
Q ss_pred ceEEEeEECCCCcEEE
Q 036953 295 FLIVPSVSIDDSRIDL 310 (792)
Q Consensus 295 ~~VwdV~~SpDGr~lv 310 (792)
..+..+.|||||+.|+
T Consensus 238 ~~~~~~~~spdg~~l~ 253 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALV 253 (388)
T ss_dssp EEEEEEEECTTSSCEE
T ss_pred cccccceECCCCCEEE
Confidence 3577889999999776
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-10 Score=124.10 Aligned_cols=183 Identities=9% Similarity=0.039 Sum_probs=120.3
Q ss_pred eeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---CcCCCCCC-eEEEEEcCCCCEEEEEECCCeE
Q 036953 44 VPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---PLVPPPRS-TIAAAFSPDGRTLASTHGDHTV 119 (792)
Q Consensus 44 V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---~L~gH~~~-V~sLafSPDG~~LaSGS~DGtV 119 (792)
+...+|+|+++.++..... ++.. .|.+|+...+ ++..+... ...+.|+|||++|+..+.++.|
T Consensus 38 ~~~~~~SpdG~~l~~~~~~----~g~~---------~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l 104 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF----DGNR---------NYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNL 104 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT----TSSC---------EEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEE
T ss_pred eecCcCCCCCCEEEEEEec----CCCc---------eEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcE
Confidence 5667788888765443111 1222 3444444433 12222222 3347899999999999999999
Q ss_pred EEEECCCCcEEEEecCCCCCcEE-------------------EEEccCCCCEEEEE-----eCCCeEEEEECCCCcEEEE
Q 036953 120 KIIDCQTGNCLKVLSGHRRTPWV-------------------VRFHPLRSEILASG-----SLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 120 rIWDl~tgk~v~~L~gH~~~Vts-------------------VafSP~dg~lLaSg-----S~DgtVrLWDl~tg~~v~t 175 (792)
++||+.+++....+..+...... +.|+| +++.++.. ..+..|.+||+.+++....
T Consensus 105 ~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~ 183 (396)
T 3c5m_A 105 MKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVI 183 (396)
T ss_dssp EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred EEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence 99999988876666655442222 24566 55554433 3566899999999887777
Q ss_pred eccCCCeeEEEEcC-CCcEEEEEcC-------CeEEEEECCCCCcccCCeEEecC--CCCeEEEEEccCCCeEEEEEee
Q 036953 176 CDFYRPIASIAFHA-EGELLAVASG-------HKLYIWPYNNKEEASSPIIVLKT--RRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 176 ~~h~s~V~sVafSp-dG~~LasgSd-------d~V~IWDlrt~~~~~~~~~~~~h--~~sVtsVafSPdG~~LlaS~s~ 244 (792)
..+...+..+.|+| +++.|+..++ ..|++||+...+.. ....+ ...+..+.|+|+|+.|+.....
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (396)
T 3c5m_A 184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR----KIKEHAEGESCTHEFWIPDGSAMAYVSYF 258 (396)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE----ESSCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee----EeeccCCCccccceEECCCCCEEEEEecC
Confidence 77778899999999 7887766542 24899998765422 12222 2357889999999988776543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=5.6e-09 Score=107.06 Aligned_cols=142 Identities=11% Similarity=0.164 Sum_probs=102.8
Q ss_pred CCCCCeEEEEEc-CCCCEEEEEEC-CCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 93 PPPRSTIAAAFS-PDGRTLASTHG-DHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 93 gH~~~V~sLafS-PDG~~LaSGS~-DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
++...+..++++ ++++.+++... ++.|++|| .+++.+..+. .+...+.++++++ +++++++...++.|.+||..
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~- 150 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN- 150 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-
Confidence 345678999994 67766665543 88999999 5677776664 3446789999999 88888888888999999964
Q ss_pred CcEEEEec---cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEec--CCCCeEEEEEccCCCeEEEE
Q 036953 170 SECIGSCD---FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLK--TRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 170 g~~v~t~~---h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~--h~~sVtsVafSPdG~~LlaS 241 (792)
++.+..+. ....+..++++++|+++++.. ++.|++||..... . ..... +...+..++++++|+.+++.
T Consensus 151 g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~---~~~~~~g~~~~p~~i~~d~~G~l~v~~ 224 (286)
T 1q7f_A 151 GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-L---RQIGGEGITNYPIGVGINSNGEILIAD 224 (286)
T ss_dssp SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-E---EEESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCE-E---EEEccCCccCCCcEEEECCCCCEEEEe
Confidence 56666663 345689999999999777766 5679999974432 1 11211 23578899999999744433
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.7e-09 Score=108.69 Aligned_cols=183 Identities=10% Similarity=0.037 Sum_probs=119.0
Q ss_pred ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc----CCCCCCeEEEEEcCCCCEEEEEECC-
Q 036953 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL----VPPPRSTIAAAFSPDGRTLASTHGD- 116 (792)
Q Consensus 42 k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L----~gH~~~V~sLafSPDG~~LaSGS~D- 116 (792)
......+|++++++..+ ...++.|.+|+..++++ ..+...+.+++|+++|+.+++...+
T Consensus 45 ~~~~~~~~~~~g~l~~~----------------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~ 108 (333)
T 2dg1_A 45 LQLEGLNFDRQGQLFLL----------------DVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF 108 (333)
T ss_dssp CCEEEEEECTTSCEEEE----------------ETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTS
T ss_pred ccccCcEECCCCCEEEE----------------ECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCC
Confidence 34556666666554322 23445566666554432 1355779999999999988877666
Q ss_pred ---CeEEEEECCCCcEEEEec--CCCCCcEEEEEccCCCCEEEEEeC------CCeEEEEECCCCcEEEEeccCCCeeEE
Q 036953 117 ---HTVKIIDCQTGNCLKVLS--GHRRTPWVVRFHPLRSEILASGSL------DHEVRLWDANTSECIGSCDFYRPIASI 185 (792)
Q Consensus 117 ---GtVrIWDl~tgk~v~~L~--gH~~~VtsVafSP~dg~lLaSgS~------DgtVrLWDl~tg~~v~t~~h~s~V~sV 185 (792)
+.|.+||..+++....+. .+...+.+++++| +++++++... .+.|..||..+++..........+..+
T Consensus 109 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 187 (333)
T 2dg1_A 109 KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGI 187 (333)
T ss_dssp SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEE
T ss_pred CCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccce
Confidence 689999998877554443 3456789999999 8888887654 356777777666554444444567899
Q ss_pred EEcCCCcEEEEEc--CCeEEEEECCCC-CcccCC--eEE--ecCCCCeEEEEEccCCCeEEEE
Q 036953 186 AFHAEGELLAVAS--GHKLYIWPYNNK-EEASSP--IIV--LKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 186 afSpdG~~LasgS--dd~V~IWDlrt~-~~~~~~--~~~--~~h~~sVtsVafSPdG~~LlaS 241 (792)
+|+|+|+.|+++. ++.|++||++.. +..... ... ......+..++++++|+.++++
T Consensus 188 ~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~ 250 (333)
T 2dg1_A 188 ALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250 (333)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred EECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEE
Confidence 9999998665554 567999999642 221100 001 1112467889999999855444
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-09 Score=126.25 Aligned_cols=141 Identities=13% Similarity=0.069 Sum_probs=101.6
Q ss_pred EEEEc--CCCCE-EEEEEC-CCeEEEEECC--CCcEEEEecC-----CCCCcEEEEEccCCCCEEEEEeCC---------
Q 036953 100 AAAFS--PDGRT-LASTHG-DHTVKIIDCQ--TGNCLKVLSG-----HRRTPWVVRFHPLRSEILASGSLD--------- 159 (792)
Q Consensus 100 sLafS--PDG~~-LaSGS~-DGtVrIWDl~--tgk~v~~L~g-----H~~~VtsVafSP~dg~lLaSgS~D--------- 159 (792)
...|+ |||++ |+.++. +..|.+|++. .......+.. |...+..++|+| |++.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCc
Confidence 55565 99998 776654 5567777765 2033455655 667789999999 99999988877
Q ss_pred -CeEEEEECCC------CcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CC--------eEEEEECC-CCCcccCCeEE-e
Q 036953 160 -HEVRLWDANT------SECIGSC-DFYRPIASIAFHAEGELLAVAS-GH--------KLYIWPYN-NKEEASSPIIV-L 220 (792)
Q Consensus 160 -gtVrLWDl~t------g~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd--------~V~IWDlr-t~~~~~~~~~~-~ 220 (792)
.+|++||+.+ ++..... .+...+..++|+|||++|+.++ ++ .|++||+. +++... ...+ .
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~-~~~l~~ 238 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD-TRTLLG 238 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE-EEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc-cEEeCC
Confidence 5899999998 6665555 5566788899999999998776 32 49999998 452111 1223 3
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.+...+..+.|+|||+ +++++.
T Consensus 239 ~~~~~~~~~~~spdg~-l~~~~~ 260 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGS-LIVATD 260 (662)
T ss_dssp ETTBCEEEEEECTTSC-EEEEEC
T ss_pred CCCceEcceEECCCCe-EEEEEC
Confidence 3467899999999999 655553
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-08 Score=119.37 Aligned_cols=227 Identities=8% Similarity=0.031 Sum_probs=141.1
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCC---CCCCeEEEEEcCCCCEEEEEECCCe-
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVP---PPRSTIAAAFSPDGRTLASTHGDHT- 118 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~g---H~~~V~sLafSPDG~~LaSGS~DGt- 118 (792)
.+....|+|+++.++.+. ...+ .+...|++|+..+++... ....+..++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~-----~~~G------~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGL-----SASG------SDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQD 194 (710)
T ss_dssp EEEEEEECTTSSEEEEEE-----EETT------CSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCS
T ss_pred EEEEEEECCCCCEEEEEE-----cCCC------CceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcc
Confidence 466778999988765541 0110 122367778777653211 1112567999999999999988766
Q ss_pred ---------------EEEEECCCCcE--EEEec--CCCCCcEEEEEccCCCCEEEEEeC-----CCeEEEEECCC-----
Q 036953 119 ---------------VKIIDCQTGNC--LKVLS--GHRRTPWVVRFHPLRSEILASGSL-----DHEVRLWDANT----- 169 (792)
Q Consensus 119 ---------------VrIWDl~tgk~--v~~L~--gH~~~VtsVafSP~dg~lLaSgS~-----DgtVrLWDl~t----- 169 (792)
|++|++.+++. ...+. .|...+..+.|+| |+++|+..+. +..|++||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 99999988762 23333 3566788999999 8888887764 67899999986
Q ss_pred -C--cEEEEeccCCCeeEEEEcCCCcEEEEEcC-----CeEEEEECCCCCcccCCeEEecCCC--CeEEEEEccCCCeEE
Q 036953 170 -S--ECIGSCDFYRPIASIAFHAEGELLAVASG-----HKLYIWPYNNKEEASSPIIVLKTRR--SLRAVHFHPHAAPFV 239 (792)
Q Consensus 170 -g--~~v~t~~h~s~V~sVafSpdG~~LasgSd-----d~V~IWDlrt~~~~~~~~~~~~h~~--sVtsVafSPdG~~Ll 239 (792)
+ .......+...+.. .|+++|+.|+..++ .+|.+||+.+++... ...+..+.. .+..+.|++++. ++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~-lv 350 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK-WKVLVPEHEKDVLEWVACVRSNF-LV 350 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG-CEEEECCCSSCEEEEEEEETTTE-EE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc-ceeccCCCCCCeEEEEEEEcCCE-EE
Confidence 4 23333344444444 48889987776652 249999998764211 123334433 688899986554 55
Q ss_pred EEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 240 LTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 240 aS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
++....... .+.++...+|...... ..+...|..+.++|+|..++
T Consensus 351 ~~~~~~g~~--------------------~l~~~~~~~g~~~~~l------~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 351 LCYLHDVKN--------------------TLQLHDLATGALLKIF------PLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp EEEEETTEE--------------------EEEEEETTTCCEEEEE------CCCSSEEEEEECCTTCSEEE
T ss_pred EEEEECCEE--------------------EEEEEECCCCCEEEec------CCCCceEEEEecCCCCCEEE
Confidence 555432100 1222332244432221 12466788888999987666
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.6e-09 Score=120.35 Aligned_cols=185 Identities=9% Similarity=-0.030 Sum_probs=124.5
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcC--CCCCCe--EEEEEcCCCCEEEEEECCCe
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLV--PPPRST--IAAAFSPDGRTLASTHGDHT 118 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~--gH~~~V--~sLafSPDG~~LaSGS~DGt 118 (792)
.+...+|+|+++.++... + ..++++..|++|+..+++.. .+...+ ..++|+|||+.|+.++.|..
T Consensus 122 ~~~~~~~SPDG~~la~~~------~-----~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQ------K-----PNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp EEEEEEECTTSSEEEEEE------E-----ETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCC
T ss_pred EEEEEEECCCCCEEEEEE------C-----CCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCC
Confidence 467788999988765441 1 01234578999999877543 233333 68999999999999998876
Q ss_pred -------------EEEEECCCCc----EEEEecCCCCCcEEEEEccCCCCEEEEEeCCC----eEEEEECCCCcEEEEec
Q 036953 119 -------------VKIIDCQTGN----CLKVLSGHRRTPWVVRFHPLRSEILASGSLDH----EVRLWDANTSECIGSCD 177 (792)
Q Consensus 119 -------------VrIWDl~tgk----~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg----tVrLWDl~tg~~v~t~~ 177 (792)
|++|++.+++ .+.....|...+..+.|+| |+++|+..+.++ .|.+||..+++......
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 269 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK 269 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeec
Confidence 9999998876 3333334667889999999 888888777666 68888876666655555
Q ss_pred cCCCeeEEEEcCCCcEEEEEc----CCeEEEEECCCCCcccCCeEEecC--CCCeEEEEEccCCCeEEEEEe
Q 036953 178 FYRPIASIAFHAEGELLAVAS----GHKLYIWPYNNKEEASSPIIVLKT--RRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 178 h~s~V~sVafSpdG~~LasgS----dd~V~IWDlrt~~~~~~~~~~~~h--~~sVtsVafSPdG~~LlaS~s 243 (792)
+...+....| ++|++++.+. +.+|.+||+.+++... ...+..+ ...+..++|+ + ..++++..
T Consensus 270 ~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~l~~~~~~-~-~~lv~~~~ 337 (695)
T 2bkl_A 270 GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARAS-WKEIVPEDSSASLLSVSIV-G-GHLSLEYL 337 (695)
T ss_dssp CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGG-CEEEECCCSSCEEEEEEEE-T-TEEEEEEE
T ss_pred CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccC-CeEEecCCCCCeEEEEEEE-C-CEEEEEEE
Confidence 5556666666 5666444443 2459999997765311 1223332 4567888888 4 44655554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-08 Score=102.37 Aligned_cols=181 Identities=13% Similarity=0.100 Sum_probs=117.2
Q ss_pred ceeeeEEeeCCCc-eEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC--CcCCCCCCeEEEEEcCCCCEEEEEECCCe
Q 036953 42 KYVPKRQWVDASK-LKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC--PLVPPPRSTIAAAFSPDGRTLASTHGDHT 118 (792)
Q Consensus 42 k~V~s~aWspd~~-lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~--~L~gH~~~V~sLafSPDG~~LaSGS~DGt 118 (792)
......+|+++++ ++ |+...++.|..|+...+ .+..+...+.+++++++|+.+++...++.
T Consensus 28 ~~~eg~~~d~~g~~l~----------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVI----------------FSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRR 91 (296)
T ss_dssp SSEEEEEEEGGGTEEE----------------EEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred ccccCCeEeCCCCEEE----------------EEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence 3456677777765 33 23333444555544432 12234567999999999998877777789
Q ss_pred EEEEECCCCcEEEEecCC----CCCcEEEEEccCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEec
Q 036953 119 VKIIDCQTGNCLKVLSGH----RRTPWVVRFHPLRSEILASGSL-----------------DHEVRLWDANTSECIGSCD 177 (792)
Q Consensus 119 VrIWDl~tgk~v~~L~gH----~~~VtsVafSP~dg~lLaSgS~-----------------DgtVrLWDl~tg~~v~t~~ 177 (792)
|.+||..+++........ ...+..++++| +++++++.+. .+.|..+|.. ++......
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR 169 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec
Confidence 999999888755443221 23567899999 8898887321 3456666665 55544445
Q ss_pred cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECC-CCCc-ccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 178 FYRPIASIAFHAEGELLAVAS-GHKLYIWPYN-NKEE-ASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 178 h~s~V~sVafSpdG~~LasgS-dd~V~IWDlr-t~~~-~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
.......++|+|+++.|++.+ ++.|++||+. .++. .. ......+...+..++++++|+.++++
T Consensus 170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~-~~~~~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ-GVHFTVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE-EEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC-CeEeeCCCCCCCeEEECCCCCEEEEc
Confidence 666789999999999885555 4569999997 3332 11 11122234456789999999844443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.1e-09 Score=108.70 Aligned_cols=151 Identities=17% Similarity=0.232 Sum_probs=101.9
Q ss_pred CeEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEECC---C--eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 79 ESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGD---H--TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 79 ~sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS~D---G--tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
..|.+|+...++...- ..+..++|||||++|+..+.+ + .|.+||+.+++.......+ . +..+.|+| +++.|
T Consensus 43 ~~l~~~d~~~~~~~~l-~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l 118 (347)
T 2gop_A 43 NTIVIENLKNNARRFI-ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKL 118 (347)
T ss_dssp EEEEEEETTTCCEEEE-ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEE
T ss_pred ceEEEEeCCCCceEEc-ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEE
Confidence 3456666554421111 457889999999999987754 3 4888898888766555433 3 99999999 88888
Q ss_pred EEEeCC---------------------------CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC-------
Q 036953 154 ASGSLD---------------------------HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG------- 199 (792)
Q Consensus 154 aSgS~D---------------------------gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd------- 199 (792)
+.++.+ ..|.+||+.+++.+..+... .+..+.|+|+| +++++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~ 196 (347)
T 2gop_A 119 LIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQY 196 (347)
T ss_dssp EEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCS
T ss_pred EEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccc
Confidence 877642 56999999988773444324 78899999999 7777642
Q ss_pred C-e--EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 200 H-K--LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 200 d-~--V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
. . |+++| +++. ..+..+ ..+..+ +|+|+.|++.+..
T Consensus 197 ~~~~~l~~~d--~~~~----~~l~~~-~~~~~~--spdg~~l~~~~~~ 235 (347)
T 2gop_A 197 FKFWDIYIWE--DGKE----EKMFEK-VSFYAV--DSDGERILLYGKP 235 (347)
T ss_dssp SCCEEEEEEE--TTEE----EEEEEE-ESEEEE--EECSSCEEEEECC
T ss_pred cccccEEEeC--CCce----EEeccC-cceeeE--CCCCCEEEEEEcc
Confidence 1 3 55566 3332 122223 445544 9999988877643
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-08 Score=105.50 Aligned_cols=171 Identities=12% Similarity=0.071 Sum_probs=105.2
Q ss_pred eeeeEEeeCCCceEeecCCCceeec--CCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEECC-
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRD--AKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTHGD- 116 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d--~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS~D- 116 (792)
.+....|+|+++.++.... .. +... |.+|+...++ +..+.. +..++|+|||+.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~----~~~~~~~~---------l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~ 125 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRA----NEEKKVSE---------IWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKR 125 (347)
T ss_dssp SCEEEEECTTSSEEEEEEE----ETTTTEEE---------EEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECC
T ss_pred cCCCeEECCCCCEEEEEEe----ccCCCcce---------EEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccC
Confidence 4566789999887655310 01 1122 3333433221 222233 8999999999999888642
Q ss_pred --------------------------CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCC-------eEE
Q 036953 117 --------------------------HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH-------EVR 163 (792)
Q Consensus 117 --------------------------GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg-------tVr 163 (792)
..|++||+.+++.+..+.. . .+..+.|+| ++ +++++..+. ...
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~ 201 (347)
T 2gop_A 126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWD 201 (347)
T ss_dssp CC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEE
T ss_pred CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEeccccccccccccc
Confidence 5799999998876455554 4 889999999 77 888776542 344
Q ss_pred EEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-C--------CeEEEEECCCCCcccCCeEEe-cCCCCeEE-EEEc
Q 036953 164 LWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-G--------HKLYIWPYNNKEEASSPIIVL-KTRRSLRA-VHFH 232 (792)
Q Consensus 164 LWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-d--------d~V~IWDlrt~~~~~~~~~~~-~h~~sVts-VafS 232 (792)
+|.+.+++......+ ..+..+ +|+|++|+..+ + ..|++|| +++. .... .+...+.. +.|+
T Consensus 202 l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~----~~l~~~~~~~~~~~~~~s 272 (347)
T 2gop_A 202 IYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV----MGILDEVDRGVGQAKIKD 272 (347)
T ss_dssp EEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE----EESSTTCCSEEEEEEEET
T ss_pred EEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce----EeccccCCcccCCccEEc
Confidence 444435554443344 444444 99999887765 2 2488888 3331 1222 34567776 8999
Q ss_pred cCCCeEEEEEe
Q 036953 233 PHAAPFVLTAE 243 (792)
Q Consensus 233 PdG~~LlaS~s 243 (792)
++ +++++.
T Consensus 273 -dg--~~~~~~ 280 (347)
T 2gop_A 273 -GK--VYFTLF 280 (347)
T ss_dssp -TE--EEEEEE
T ss_pred -Cc--EEEEEe
Confidence 87 444443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-08 Score=103.13 Aligned_cols=145 Identities=10% Similarity=0.088 Sum_probs=109.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC----CeEEEEECC
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD----HEVRLWDAN 168 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D----gtVrLWDl~ 168 (792)
.+...+.+++|+++++.++++..++.|.+||..+++....+..+...+.+++|++ +++++++...+ +.|.+||..
T Consensus 42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTT
T ss_pred ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCC
Confidence 4556689999999999888888899999999988876655545677899999999 88888877766 689999998
Q ss_pred CCcEEEEec---cCCCeeEEEEcCCCcEEEEEcC-------CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeE
Q 036953 169 TSECIGSCD---FYRPIASIAFHAEGELLAVASG-------HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPF 238 (792)
Q Consensus 169 tg~~v~t~~---h~s~V~sVafSpdG~~LasgSd-------d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~L 238 (792)
+++....+. ....+.+++++|+|+++++... ..|+.||....+.. ........+..++|+|+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~i~~~~dg~~l 196 (333)
T 2dg1_A 121 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQNISVANGIALSTDEKVL 196 (333)
T ss_dssp SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE----EEEEEESSEEEEEECTTSSEE
T ss_pred CCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE----EeecCCCcccceEECCCCCEE
Confidence 877653332 3457899999999998887763 34777776544322 122233457899999999977
Q ss_pred EEEE
Q 036953 239 VLTA 242 (792)
Q Consensus 239 laS~ 242 (792)
+++.
T Consensus 197 ~v~~ 200 (333)
T 2dg1_A 197 WVTE 200 (333)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6655
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-09 Score=121.78 Aligned_cols=194 Identities=9% Similarity=-0.031 Sum_probs=132.6
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEE--ECCCeEEEEECCCCcEEEEecCCCCCcE---------EEEEc--cCCCCE-EEEE
Q 036953 91 LVPPPRSTIAAAFSPDGRTLAST--HGDHTVKIIDCQTGNCLKVLSGHRRTPW---------VVRFH--PLRSEI-LASG 156 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSG--S~DGtVrIWDl~tgk~v~~L~gH~~~Vt---------sVafS--P~dg~l-LaSg 156 (792)
+.+|...+..++|+++...+++. +.++...||....+.....+..|...+. ...|+ | |++. |+..
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la~~ 97 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLVFT 97 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEEEE
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeec-CCCeEEEEE
Confidence 45688899999999876666766 5588999999655555677777776666 66676 8 7776 6655
Q ss_pred eC-CCeEEEEECC--C-CcEEEEec-----cCCCeeEEEEcCCCcEEEEEcCC-----------eEEEEECCC------C
Q 036953 157 SL-DHEVRLWDAN--T-SECIGSCD-----FYRPIASIAFHAEGELLAVASGH-----------KLYIWPYNN------K 210 (792)
Q Consensus 157 S~-DgtVrLWDl~--t-g~~v~t~~-----h~s~V~sVafSpdG~~LasgSdd-----------~V~IWDlrt------~ 210 (792)
+. +..|.+||+. . ++...... +...+..++|+|||+.|+.++.+ .|++||+.+ +
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 43 5677777876 3 54433333 45568899999999999888743 499999987 3
Q ss_pred CcccCCeEEe-cCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEec-CC---CEEEEee
Q 036953 211 EEASSPIIVL-KTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQ-SG---DHVSLAA 285 (792)
Q Consensus 211 ~~~~~~~~~~-~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~s-sG---~~~~l~s 285 (792)
+. ..+. .+...+..++|+|||+.|+.+..+..... |....+.++... +| ....+..
T Consensus 178 ~~----~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~---------------~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 178 AV----RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP---------------WEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp GS----EESSCSCSSEECCCEECTTSSEEEEEEECTTCCT---------------TTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred ce----eEEEecCCCcccCceECCCCCEEEEEECCCCCCC---------------CCCcEEEEEEECCCCcccccEEeCC
Confidence 32 2334 45567888999999998887775432111 111235566655 34 3333332
Q ss_pred ccCcccCCCceEEEeEECCCCcEEE
Q 036953 286 ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 286 ~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
++...+..+.|+|||++++
T Consensus 239 ------~~~~~~~~~~~spdg~l~~ 257 (662)
T 3azo_A 239 ------GPEEAIAQAEWAPDGSLIV 257 (662)
T ss_dssp ------ETTBCEEEEEECTTSCEEE
T ss_pred ------CCCceEcceEECCCCeEEE
Confidence 2567889999999999554
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-07 Score=109.75 Aligned_cols=238 Identities=12% Similarity=0.051 Sum_probs=152.7
Q ss_pred EEEEEeCCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--CCcEEEEecCCCCCcEEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ--TGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~--tgk~v~~L~gH~~~VtsVaf 145 (792)
.+++...++.+.++|..++++. .....+..+.|+|||+++++++.|+.|.+||+. +++.+..+... .....++|
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~ 247 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIET 247 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEE
Confidence 4455557889999998876432 234467899999999999999999999999996 78888887743 34678999
Q ss_pred c----cCCCCEEEEEe-CCCeEEEEECCCCcEEEEeccC-----------------------------------------
Q 036953 146 H----PLRSEILASGS-LDHEVRLWDANTSECIGSCDFY----------------------------------------- 179 (792)
Q Consensus 146 S----P~dg~lLaSgS-~DgtVrLWDl~tg~~v~t~~h~----------------------------------------- 179 (792)
+ | ++++++.+. .+++|.++|..+.+++..+...
T Consensus 248 s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd 326 (567)
T 1qks_A 248 SKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 326 (567)
T ss_dssp CCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred ccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEe
Confidence 9 7 777777665 5699999999888777664210
Q ss_pred ---------------CCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEE---ecCCCCeEEEEEccCCCeEE
Q 036953 180 ---------------RPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIV---LKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 180 ---------------s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~---~~h~~sVtsVafSPdG~~Ll 239 (792)
....++.|+|+|++|+++. +++|.++|+.+.+... .... ..|...-..+ ++|++..+.
T Consensus 327 ~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~-~i~vgg~~Phpg~g~~~-~~p~~g~v~ 404 (567)
T 1qks_A 327 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA-IEDTGGQTPHPGRGANF-VHPTFGPVW 404 (567)
T ss_dssp TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE-EEECSSSSBCCTTCEEE-EETTTEEEE
T ss_pred cCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEE-EEeccCcCCCCccceee-ECCCCCcEE
Confidence 0122567999999988776 5779999999887543 1111 1132212122 688866676
Q ss_pred EEEeeC--cc-----cc-------CCCceeeecCCC---cccCCCCceEEEEecCC-------CEEEEee--cc------
Q 036953 240 LTAEVN--DL-----DS-------SDSSMTRATSPG---YLRYPPPAVFVANAQSG-------DHVSLAA--EL------ 287 (792)
Q Consensus 240 aS~s~~--dL-----rs-------~d~~~~l~t~sg---~~~~p~~~~~l~~~ssG-------~~~~l~s--~l------ 287 (792)
++.... .| +. |.....+....+ +.+..+...++|+.... +.+.+.. .+
T Consensus 405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~ 484 (567)
T 1qks_A 405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 484 (567)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence 665422 22 22 222223333221 34455666667775521 1233333 11
Q ss_pred ---Ccc--------cCCCceEEEeEECCCCcEEEEc
Q 036953 288 ---PLM--------SSLPFLIVPSVSIDDSRIDLQH 312 (792)
Q Consensus 288 ---~~l--------~gh~~~VwdV~~SpDGr~lv~~ 312 (792)
..+ .....+++.+.|++||+++.++
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred CCcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence 011 1124589999999999998844
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.6e-08 Score=102.90 Aligned_cols=167 Identities=10% Similarity=-0.020 Sum_probs=121.8
Q ss_pred EEEEE-eCCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCC-----CCc
Q 036953 71 GLVSW-VEAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHR-----RTP 140 (792)
Q Consensus 71 ~L~S~-s~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~-----~~V 140 (792)
++|.. ..++.|.+||..+.++. ........+++++++ .++++. .++.|.+||..+++....+.... ...
T Consensus 55 ~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p 133 (328)
T 3dsm_A 55 IGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGST 133 (328)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBC
T ss_pred EEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCc
Confidence 34444 44678999998876542 234678899999888 455555 88999999999998877776332 145
Q ss_pred EEEEEccCCCCEEEEEe-CCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC-----------CeEEEEECC
Q 036953 141 WVVRFHPLRSEILASGS-LDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG-----------HKLYIWPYN 208 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS-~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd-----------d~V~IWDlr 208 (792)
..+++ . ++.++++.. .+++|.+||+.+++.+..+........+.++++|++++++.. +.|.+||..
T Consensus 134 ~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 134 EQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp CCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred ceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 67777 3 556666554 589999999999998888876666788999999998777664 469999998
Q ss_pred CCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 209 NKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 209 t~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+.+... ............++|+|+++.++++.
T Consensus 212 t~~v~~--~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 212 TFTVEK--QFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp TTEEEE--EEECCTTCCCEEEEECTTSCEEEEES
T ss_pred CCeEEE--EEecCCCCCceeEEEecCCCEEEEEc
Confidence 876432 11122234688999999999887754
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=5.5e-08 Score=99.61 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=120.6
Q ss_pred CCcEEEEEeC--CCeEEEEeccCCC---c-CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec--CCCCC
Q 036953 68 AKRGLVSWVE--AESLRHLSAKYCP---L-VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS--GHRRT 139 (792)
Q Consensus 68 ~~~~L~S~s~--d~sIrvWd~~t~~---L-~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~--gH~~~ 139 (792)
.+..+|.... ++.|.+|+..... + ..+...+.+++++++|+.+++...++.|++||.. ++.+..+. ++...
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 165 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEF 165 (286)
T ss_dssp TTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSS
T ss_pred CCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCC
Confidence 4556666653 6788888843321 1 1344578999999999988877788999999964 56666664 45567
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecc---CCCeeEEEEcCCCcEEEEEc-CC-eEEEEECCCCCccc
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF---YRPIASIAFHAEGELLAVAS-GH-KLYIWPYNNKEEAS 214 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h---~s~V~sVafSpdG~~LasgS-dd-~V~IWDlrt~~~~~ 214 (792)
+.++++++ +++++++...++.|++||. +++.+..+.. ...+..++++++|+++++.. ++ .|++||... +...
T Consensus 166 p~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~ 242 (286)
T 1q7f_A 166 PNGVVVND-KQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLIS 242 (286)
T ss_dssp EEEEEECS-SSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEE
T ss_pred cEEEEECC-CCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEE
Confidence 89999999 8888888888999999997 4566666643 25789999999999888876 44 799999643 3221
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 215 SPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 215 ~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
..........+..++|+|+|+ ++++..+
T Consensus 243 -~~~~~~~~~~~~~i~~~~~g~-l~vs~~~ 270 (286)
T 1q7f_A 243 -ALESKVKHAQCFDVALMDDGS-VVLASKD 270 (286)
T ss_dssp -EEEESSCCSCEEEEEEETTTE-EEEEETT
T ss_pred -EEcccCCCCcceeEEECCCCc-EEEECCC
Confidence 111111233478999999997 5555433
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.95 E-value=3e-08 Score=107.46 Aligned_cols=95 Identities=9% Similarity=0.079 Sum_probs=72.3
Q ss_pred CCeEEEEeccCCCc----CCCCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEECCCCcEEEEecC------CC
Q 036953 78 AESLRHLSAKYCPL----VPPPRSTIAAAFSPDGRTLASTHG----------DHTVKIIDCQTGNCLKVLSG------HR 137 (792)
Q Consensus 78 d~sIrvWd~~t~~L----~gH~~~V~sLafSPDG~~LaSGS~----------DGtVrIWDl~tgk~v~~L~g------H~ 137 (792)
++.+.+||..++++ ..+..+ .++|+|||++++++.. ++.|.+||+.+++.+..+.. +.
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence 45777887765533 223222 8999999999999863 67899999999988877753 23
Q ss_pred CCcEEEEEccCCCCEEEEEeC--CCeEEEEECCCCcEEEE
Q 036953 138 RTPWVVRFHPLRSEILASGSL--DHEVRLWDANTSECIGS 175 (792)
Q Consensus 138 ~~VtsVafSP~dg~lLaSgS~--DgtVrLWDl~tg~~v~t 175 (792)
.....++|+| ++++|+++.. +++|.+||+.+++.+..
T Consensus 108 ~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 108 NYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp CCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred CCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 5677899999 8999888764 68899999988776655
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-08 Score=107.09 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=68.8
Q ss_pred EEEccCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCC-
Q 036953 143 VRFHPLRSEILASGSL-----------DHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNK- 210 (792)
Q Consensus 143 VafSP~dg~lLaSgS~-----------DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~- 210 (792)
++|+| +++.++.+.. +++|.+||+.+++.+..+.... +.+++|+|||++|++++.+.|.+||..++
T Consensus 259 ~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~~ 336 (361)
T 2oiz_A 259 VGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDGGNVNVYDISQPE 336 (361)
T ss_dssp EEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECSSCEEEEECSSSS
T ss_pred EEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCCCeEEEEECCCCc
Confidence 56777 5555554432 3489999999999999987555 99999999999999888766999999988
Q ss_pred -CcccCCeEEecCCCCeEEEEEccCCC
Q 036953 211 -EEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 211 -~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
+... ........-..+.++|+|.
T Consensus 337 l~~~~---~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 337 PKLLR---TIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEE---EETTSCSSEEEEEECCCSC
T ss_pred ceeeE---EeccCCCCcEEEEecCCCC
Confidence 5332 2234566678899999986
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.94 E-value=4e-09 Score=111.77 Aligned_cols=188 Identities=10% Similarity=0.011 Sum_probs=120.5
Q ss_pred CCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 96 RSTIAAAFSPDGRTLASTHGD---HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~D---GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
..+..++|+|||++|+....+ ..|.+||+.+++......++......+.|+| +++.|+.++.++.|++||+.+++.
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCCc
Confidence 336778999999998877653 4788899988875544443333334478999 999999999999999999999876
Q ss_pred EEEec-cCCCeeE-------------------EEEcCCCcEEEEEc------CCeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 173 IGSCD-FYRPIAS-------------------IAFHAEGELLAVAS------GHKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 173 v~t~~-h~s~V~s-------------------VafSpdG~~LasgS------dd~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
..... ....... +.|+|+++.++... +..|++||+.+++.. ....+...+
T Consensus 115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~----~~~~~~~~~ 190 (396)
T 3c5m_A 115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE----VIHQDTAWL 190 (396)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE----EEEEESSCE
T ss_pred EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE----eeccCCccc
Confidence 65554 2222222 34677777665532 234999999887632 233566778
Q ss_pred EEEEEcc-CCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCC
Q 036953 227 RAVHFHP-HAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDD 305 (792)
Q Consensus 227 tsVafSP-dG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpD 305 (792)
..+.|+| +++.|+...... -.. ....+.++....+....+... .....+..+.|+||
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~-~~~----------------~~~~l~~~d~~~~~~~~l~~~-----~~~~~~~~~~~spd 248 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGP-HDL----------------VDARMWLVNEDGSNVRKIKEH-----AEGESCTHEFWIPD 248 (396)
T ss_dssp EEEEEETTEEEEEEEEECSC-SSS----------------CSCCCEEEETTSCCCEESSCC-----CTTEEEEEEEECTT
T ss_pred ccceECCCCCCEEEEEecCC-CCC----------------CCceEEEEECCCCceeEeecc-----CCCccccceEECCC
Confidence 9999999 788777665311 000 001233333333322222210 01346778999999
Q ss_pred CcEEE
Q 036953 306 SRIDL 310 (792)
Q Consensus 306 Gr~lv 310 (792)
|+.|+
T Consensus 249 g~~l~ 253 (396)
T 3c5m_A 249 GSAMA 253 (396)
T ss_dssp SSCEE
T ss_pred CCEEE
Confidence 99776
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.9e-08 Score=105.26 Aligned_cols=162 Identities=14% Similarity=0.197 Sum_probs=117.1
Q ss_pred eCCCeEEEEeccCC--Cc------------CCCCCCeEEEEEcC-CCCEEEEEE-CCCeEEEEECCCCcEEEEecC----
Q 036953 76 VEAESLRHLSAKYC--PL------------VPPPRSTIAAAFSP-DGRTLASTH-GDHTVKIIDCQTGNCLKVLSG---- 135 (792)
Q Consensus 76 s~d~sIrvWd~~t~--~L------------~gH~~~V~sLafSP-DG~~LaSGS-~DGtVrIWDl~tgk~v~~L~g---- 135 (792)
..++.|++|+.... .+ .++......++|+| +++.+++.+ .++.|++|| .+++.+..+..
T Consensus 109 ~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~ 187 (329)
T 3fvz_A 109 VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSG 187 (329)
T ss_dssp TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCS
T ss_pred CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCC
Confidence 34567777776433 11 24455789999999 788888776 689999999 56777777642
Q ss_pred ------CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---cCCCeeEEEEcCCCcEEEEEc--------
Q 036953 136 ------HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD---FYRPIASIAFHAEGELLAVAS-------- 198 (792)
Q Consensus 136 ------H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~---h~s~V~sVafSpdG~~LasgS-------- 198 (792)
+-..+.+++++|+.+.++++...++.|++||..+++.+..+. +...+..++|+| +..+...+
T Consensus 188 ~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~ 266 (329)
T 3fvz_A 188 SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQE 266 (329)
T ss_dssp SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSC
T ss_pred CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCC
Confidence 224489999999337888888889999999999899888873 556788999999 44444332
Q ss_pred CCeEEEEECCCCCcccCCeEE---ecCCCCeEEEEEccCCCeEEEEEe
Q 036953 199 GHKLYIWPYNNKEEASSPIIV---LKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 199 dd~V~IWDlrt~~~~~~~~~~---~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+..|++||+.+++... .. ..+......++++|+|. ++++..
T Consensus 267 ~~~v~~~~~~~g~~~~---~~~~~~~~~~~p~~ia~~~dG~-lyvad~ 310 (329)
T 3fvz_A 267 PVQGFVMNFSSGEIID---VFKPVRKHFDMPHDIVASEDGT-VYIGDA 310 (329)
T ss_dssp CCCEEEEETTTCCEEE---EECCSSSCCSSEEEEEECTTSE-EEEEES
T ss_pred CcEEEEEEcCCCeEEE---EEcCCCCccCCeeEEEECCCCC-EEEEEC
Confidence 2359999998877433 11 23556789999999994 655553
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-08 Score=112.04 Aligned_cols=140 Identities=11% Similarity=0.104 Sum_probs=107.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE 171 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~ 171 (792)
..+.. |+.++| |++.|+++ .++.|++||+.+......+..|+..+.++.+.+ . .++.++.||+|.+||+.+++
T Consensus 85 ~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~ 157 (388)
T 1xip_A 85 KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKS 157 (388)
T ss_dssp EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCC
T ss_pred eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCc
Confidence 34666 999999 99999999 889999999988776667777888899888876 2 38889999999999999887
Q ss_pred EEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCc--cc---CCeEEe---cCCCCeEEEEEccCCCeEEEEE
Q 036953 172 CIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEE--AS---SPIIVL---KTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 172 ~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~--~~---~~~~~~---~h~~sVtsVafSPdG~~LlaS~ 242 (792)
... ....|.+++|+|+| +.+...++++++|+....+. .. .+.... .|...|.+|.|.+++.++++=.
T Consensus 158 ~~~---~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 158 TKQ---LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEE---EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred ccc---ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 654 34689999999999 44444477799998876652 11 000011 2678899999999998776433
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-07 Score=94.12 Aligned_cols=141 Identities=9% Similarity=0.073 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
...+.+++++++++.+++.. ++.|.+||...... ..+. .....+.++++++ +++++++...++.|.+||..+....
T Consensus 66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~ 142 (270)
T 1rwi_B 66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT 142 (270)
T ss_dssp CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeE
Confidence 34678899999998655554 88999999876543 3333 2335789999999 8888888778899999987665443
Q ss_pred EEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 174 GSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 174 ~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
... .....+.+++++++|+++++.. ++.|++||........ ....+...+..++++++|. +.++.
T Consensus 143 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~d~~g~-l~v~~ 209 (270)
T 1rwi_B 143 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV---LPFTDITAPWGIAVDEAGT-VYVTE 209 (270)
T ss_dssp ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE---CCCSSCCSEEEEEECTTCC-EEEEE
T ss_pred eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe---ecccCCCCceEEEECCCCC-EEEEE
Confidence 322 2334678899999999777665 5679999987655321 1122336688999999995 55444
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-07 Score=111.87 Aligned_cols=146 Identities=10% Similarity=0.065 Sum_probs=106.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCe------
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDH-----TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE------ 161 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DG-----tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt------ 161 (792)
+|...+..++|||||++|+.+..++ +|++||+.+++.+.....+. .+..++|+| |++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTH-DGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECT-TSSEEEEEECCCCSSCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEe-CCCEEEEEEECCccccccc
Confidence 3444688999999999998776543 89999999998765433222 367899999 9999998888766
Q ss_pred ----------EEEEECCCCcE--EEEec---cCCCeeEEEEcCCCcEEEEEc------CCeEEEEECCC------CCccc
Q 036953 162 ----------VRLWDANTSEC--IGSCD---FYRPIASIAFHAEGELLAVAS------GHKLYIWPYNN------KEEAS 214 (792)
Q Consensus 162 ----------VrLWDl~tg~~--v~t~~---h~s~V~sVafSpdG~~LasgS------dd~V~IWDlrt------~~~~~ 214 (792)
|++|++.+++. ...+. +...+..+.|+|||++|+..+ +..|++||+.+ +...
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~- 278 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK- 278 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC-
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc-
Confidence 99999988762 22222 345678999999999888765 23499999976 3211
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 215 SPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 215 ~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
...+..+...+.. .|+|+|+.|++.+.
T Consensus 279 -~~~l~~~~~~~~~-~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 279 -WVKLIDNFEGEYD-YVTNEGTVFTFKTN 305 (710)
T ss_dssp -CEEEECSSSSCEE-EEEEETTEEEEEEC
T ss_pred -eEEeeCCCCcEEE-EEeccCCEEEEEEC
Confidence 2334445555555 48899998887764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.1e-07 Score=96.20 Aligned_cols=164 Identities=13% Similarity=0.045 Sum_probs=119.9
Q ss_pred CcEEEEEeCCCeEEEEeccCCC----cCCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCC-CCcEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCP----LVPPP-RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHR-RTPWV 142 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~----L~gH~-~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~-~~Vts 142 (792)
+..+++.+.++.|.+||.++++ +..+. ..+.++.++|+|+.|+ +.++.|+.||. +++.++.+..+. ..+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 3455566667777777775553 22333 4688999999999888 45788999998 899999998653 46888
Q ss_pred EEEccCCCCEEEEEeC-CCeEEEEECCCCcEEEEeccC-------CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcc
Q 036953 143 VRFHPLRSEILASGSL-DHEVRLWDANTSECIGSCDFY-------RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEA 213 (792)
Q Consensus 143 VafSP~dg~lLaSgS~-DgtVrLWDl~tg~~v~t~~h~-------s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~ 213 (792)
+.+.+ +++++++.+. ++.|..+|. +++.++.+... .....+.+.++|++|++.. ++.|.+||.+ ++..
T Consensus 82 ~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 82 ARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred cEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 99999 9999999887 778888886 77777776421 2345667889999999887 5669999987 6643
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 214 SSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 214 ~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
. ..........+.+.++|+.+++..
T Consensus 159 w----~~~~~~~~~~~~~~~~g~~~v~~~ 183 (276)
T 3no2_A 159 N----SVKLSGTPFSSAFLDNGDCLVACG 183 (276)
T ss_dssp E----EEECSSCCCEEEECTTSCEEEECB
T ss_pred E----EEECCCCccceeEcCCCCEEEEeC
Confidence 2 233334566788889998665543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.5e-07 Score=95.53 Aligned_cols=139 Identities=9% Similarity=0.037 Sum_probs=105.2
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 95 PRSTIAAAFSPDGR-TLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 95 ~~~V~sLafSPDG~-~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
.....+++|+|+++ .++++..++.|.+||..++ ...+..+...+.++++++ +++++++...++.|.+||..+++..
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEE
Confidence 44578999999998 6778888999999999877 666777788899999999 8888888777899999999888765
Q ss_pred EEec-----cCCCeeEEEEcCCCcEEEEE----c--------------CCeEEEEECCCCCcccCCeEEecCCCCeEEEE
Q 036953 174 GSCD-----FYRPIASIAFHAEGELLAVA----S--------------GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVH 230 (792)
Q Consensus 174 ~t~~-----h~s~V~sVafSpdG~~Lasg----S--------------dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVa 230 (792)
.... ....+..++++++|+++++. . .+.|+.||.. ++ ......+....+.++
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~----~~~~~~~~~~~~gi~ 178 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT----LSAPIRDRVKPNGLA 178 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC----EEEEECCCSSEEEEE
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC----EEEeecCCCCCccEE
Confidence 4432 12356789999999988873 2 2346666654 32 123344556778999
Q ss_pred EccCCCeEEEEE
Q 036953 231 FHPHAAPFVLTA 242 (792)
Q Consensus 231 fSPdG~~LlaS~ 242 (792)
|+|+++.+ ++.
T Consensus 179 ~s~dg~~l-v~~ 189 (296)
T 3e5z_A 179 FLPSGNLL-VSD 189 (296)
T ss_dssp ECTTSCEE-EEE
T ss_pred ECCCCCEE-EEe
Confidence 99999977 544
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-06 Score=90.54 Aligned_cols=144 Identities=10% Similarity=0.079 Sum_probs=94.4
Q ss_pred CCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCcEEEE-ecC----CCCCcEEEEEccCCCCEEEEEeCC--------
Q 036953 94 PPRSTIAAAFSPD-GRTLASTHGDHTVKIIDCQTGNCLKV-LSG----HRRTPWVVRFHPLRSEILASGSLD-------- 159 (792)
Q Consensus 94 H~~~V~sLafSPD-G~~LaSGS~DGtVrIWDl~tgk~v~~-L~g----H~~~VtsVafSP~dg~lLaSgS~D-------- 159 (792)
+...+.+++++++ ++.++ +..++.|.+||.. ++.... ... ....+.++++++ +++++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~ 145 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYT 145 (314)
T ss_dssp EECCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCC
T ss_pred CCCCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCccccccccc
Confidence 4467999999998 65444 4444579999988 765433 221 124588999999 88888877655
Q ss_pred -------CeEEEEECCCCcEEEEeccCCCeeEEEEc----CCCcEEEEEc--CCeEEEEECC-CCCcccC-CeEEe-cCC
Q 036953 160 -------HEVRLWDANTSECIGSCDFYRPIASIAFH----AEGELLAVAS--GHKLYIWPYN-NKEEASS-PIIVL-KTR 223 (792)
Q Consensus 160 -------gtVrLWDl~tg~~v~t~~h~s~V~sVafS----pdG~~LasgS--dd~V~IWDlr-t~~~~~~-~~~~~-~h~ 223 (792)
+.|..||.. ++.............++|+ ++++.|+++. +++|++||++ .++.... ..... .+.
T Consensus 146 ~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 146 RSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp BTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred ccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence 567888876 6555444444567899999 9997665553 5679999986 3321110 01111 122
Q ss_pred -CCeEEEEEccCCCeEEEE
Q 036953 224 -RSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 224 -~sVtsVafSPdG~~LlaS 241 (792)
.....++++++|+.+++.
T Consensus 225 ~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 225 EGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEE
T ss_pred CCCCCceEECCCCCEEEEE
Confidence 557889999999855544
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.2e-07 Score=91.68 Aligned_cols=169 Identities=9% Similarity=0.007 Sum_probs=118.5
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcC----CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLV----PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~----gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
+..+|....++.|..|+.....+. .....+..++++++|+.+++...++.|.+|+..+.............+.+++
T Consensus 77 ~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~ 156 (270)
T 1rwi_B 77 AGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA 156 (270)
T ss_dssp TCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEE
T ss_pred CCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEE
Confidence 344666655778888887654321 2235689999999999777777788999998665544333333345678999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h 222 (792)
+++ +++++++...++.|.+||.......... .....+.+++++++|.++++.. ++.|.+||........ ....+
T Consensus 157 ~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~---~~~~~ 232 (270)
T 1rwi_B 157 VDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV---LPFTG 232 (270)
T ss_dssp ECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE---CCCCS
T ss_pred EeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee---eccCC
Confidence 999 8888888777899999999876654432 2336788999999997777665 4569999986654221 11123
Q ss_pred CCCeEEEEEccCCCeEEEEE
Q 036953 223 RRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~ 242 (792)
...+.+++++++|+ ++++.
T Consensus 233 ~~~p~~i~~~~~g~-l~v~~ 251 (270)
T 1rwi_B 233 LNTPLAVAVDSDRT-VYVAD 251 (270)
T ss_dssp CSCEEEEEECTTCC-EEEEE
T ss_pred CCCceeEEECCCCC-EEEEE
Confidence 35689999999998 54444
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-07 Score=108.56 Aligned_cols=141 Identities=17% Similarity=0.116 Sum_probs=99.5
Q ss_pred CCCCCeEEEEEcCCCCEEEE-----EECCCeEEEEECCCCcEEEEecCCCCCc--EEEEEccCCCCEEEEEeCCCe----
Q 036953 93 PPPRSTIAAAFSPDGRTLAS-----THGDHTVKIIDCQTGNCLKVLSGHRRTP--WVVRFHPLRSEILASGSLDHE---- 161 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaS-----GS~DGtVrIWDl~tgk~v~~L~gH~~~V--tsVafSP~dg~lLaSgS~Dgt---- 161 (792)
+|...+..++|||||++|+. |+.+.+|++||+.+++.+. ..+...+ ..++|+| |++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEec-CCCEEEEEEecCCCCCc
Confidence 46667899999999999984 3445789999999987541 1122222 6799999 9999999988876
Q ss_pred ---------EEEEECCCCcE--EEEec---cCCCeeEEEEcCCCcEEEEEc-CC----eEEEEECCCCCcccCCeEEecC
Q 036953 162 ---------VRLWDANTSEC--IGSCD---FYRPIASIAFHAEGELLAVAS-GH----KLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 162 ---------VrLWDl~tg~~--v~t~~---h~s~V~sVafSpdG~~LasgS-dd----~V~IWDlrt~~~~~~~~~~~~h 222 (792)
|++|++.+++. ...+. +...+..+.|+|||++|+..+ ++ .|++||..+++ ...+..+
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~----~~~l~~~ 270 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD----FRLLVKG 270 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS----CEEEEEC
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc----eEEeecC
Confidence 99999998762 23332 345788999999999887765 33 37777654443 2234445
Q ss_pred CCCeEEEEEccCCCeEEEEE
Q 036953 223 RRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~ 242 (792)
...+....| ++|+ +++.+
T Consensus 271 ~~~~~~~~~-~~g~-l~~~s 288 (695)
T 2bkl_A 271 VGAKYEVHA-WKDR-FYVLT 288 (695)
T ss_dssp SSCCEEEEE-ETTE-EEEEE
T ss_pred CCceEEEEe-cCCc-EEEEE
Confidence 556666667 6777 66554
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-07 Score=107.61 Aligned_cols=183 Identities=10% Similarity=0.038 Sum_probs=115.3
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcC-CCCCC--eEEEEEcCCCCEEEEEECCCe-
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLV-PPPRS--TIAAAFSPDGRTLASTHGDHT- 118 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~-gH~~~--V~sLafSPDG~~LaSGS~DGt- 118 (792)
.+....|+|+++.++.+. ...+ .+...|++|+..++... .+... +..++|+|| +.|+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~-----~~~G------~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~ 231 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSV-----QDGG------SDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPK 231 (741)
T ss_dssp EEEEEEECTTSSEEEEEE-----EETT------CSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC-
T ss_pred EEEeEEECCCCCEEEEEE-----cCCC------CceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcc
Confidence 466778999988765541 1111 11235788887766432 11112 257899999 99998887654
Q ss_pred -------------EEEEECCCCcE--EEEec--CCCCCcEEEEEccCCCCEEEEEeCCC-----eEEEEECCCC--c-EE
Q 036953 119 -------------VKIIDCQTGNC--LKVLS--GHRRTPWVVRFHPLRSEILASGSLDH-----EVRLWDANTS--E-CI 173 (792)
Q Consensus 119 -------------VrIWDl~tgk~--v~~L~--gH~~~VtsVafSP~dg~lLaSgS~Dg-----tVrLWDl~tg--~-~v 173 (792)
|++|++.+++. ...+. .+...+..+.|+| |+++|+..+.++ .|++||+.++ + ..
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 89999987752 23333 3444688999999 888888777544 8999999887 4 44
Q ss_pred EEeccCCCeeEEEEcCCCcEEEEEcC-----CeEEEEECCCCC-cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 174 GSCDFYRPIASIAFHAEGELLAVASG-----HKLYIWPYNNKE-EASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 174 ~t~~h~s~V~sVafSpdG~~LasgSd-----d~V~IWDlrt~~-~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
............. +++|+.|+..++ .+|.+||+.+.. ... .....+...+..+.|+ +..++++..
T Consensus 311 ~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--~l~~~~~~~l~~~~~~--~~~lv~~~~ 381 (741)
T 1yr2_A 311 ALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD--TVVPESKDNLESVGIA--GNRLFASYI 381 (741)
T ss_dssp EEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEE--EEECCCSSEEEEEEEE--BTEEEEEEE
T ss_pred EecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccE--EEecCCCCeEEEEEEE--CCEEEEEEE
Confidence 4444444444443 488887777652 239999997752 111 1222334456677776 445665554
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.9e-07 Score=102.18 Aligned_cols=179 Identities=8% Similarity=0.041 Sum_probs=121.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-----------EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEE
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGN-----------CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLW 165 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk-----------~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLW 165 (792)
.++.+++++....+++|+.|+ +++|++...+ ....+ .+.. |+.++| ++++|+.+ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 689999999999999999985 6679865332 11223 3666 999999 56888888 88999999
Q ss_pred ECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 166 DANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 166 Dl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
|+++....... .+...+.++.+.+.. ++++.+++.|.+||++...... ....|++++|+|+| ++++..+
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE--EEEEETT
T ss_pred EchhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc--eEEEEcC
Confidence 99876544333 466778888776543 4444457779999998776421 34579999999999 5666655
Q ss_pred CccccCCCceeeecCCCcccCCCCceEEEEecCCCE---EEEeeccCccc---CCCceEEEeEECCCCcEEEEccccc
Q 036953 245 NDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDH---VSLAAELPLMS---SLPFLIVPSVSIDDSRIDLQHASRR 316 (792)
Q Consensus 245 ~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~---~~l~s~l~~l~---gh~~~VwdV~~SpDGr~lv~~~~~~ 316 (792)
.++..+ ....+.+ ..+... +.+. +|...|.++.|.++++++++....+
T Consensus 182 g~i~~~-----------------------~~~~~~~~~k~~I~~P-p~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~ 235 (388)
T 1xip_A 182 RSFQSF-----------------------AWRNGEMEKQFEFSLP-SELEELPVEEYSPLSVTILSPQDFLAVFGNVI 235 (388)
T ss_dssp SCEEEE-----------------------EEETTEEEEEEEECCC-HHHHTSCTTTSEEEEEEESSSSEEEEEEECCC
T ss_pred CcEEEE-----------------------cCCCccccccceecCC-cccccccCCCeeEEEEEEecCCeEEEEEcCCC
Confidence 544332 1122221 112111 1122 3789999999999999999544443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-06 Score=92.29 Aligned_cols=200 Identities=12% Similarity=0.045 Sum_probs=137.5
Q ss_pred CCCceEeeecccceeeCCC---C-ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCCCCC
Q 036953 22 RRRARNVSRLLAHREISPK---T-KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRS 97 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels~~---t-k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~~ 97 (792)
..+.+.+|+....+.+... . ..+....++|+++++.++ + ..+.....++. .+|.... +....
T Consensus 13 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~-------~--~~V~~~d~~G~-~~W~~~~----~~~~~ 78 (276)
T 3no2_A 13 GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSY-------S--KGAKMITRDGR-ELWNIAA----PAGCE 78 (276)
T ss_dssp TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEEC-------B--SEEEEECTTSC-EEEEEEC----CTTCE
T ss_pred CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeC-------C--CCEEEECCCCC-EEEEEcC----CCCcc
Confidence 4566777877565555421 1 246677778887766532 1 12333333332 3454432 12245
Q ss_pred eEEEEEcCCCCEEEEEEC-CCeEEEEECCCCcEEEEec------CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 98 TIAAAFSPDGRTLASTHG-DHTVKIIDCQTGNCLKVLS------GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~-DGtVrIWDl~tgk~v~~L~------gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+.++.+.+||+.+++.+. ++.|..+|. +++.++.+. .+......+++.+ +++++++...++.|.+||.. +
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-S
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-C
Confidence 889999999999999887 778888885 677777664 1222455677888 89999999999999999998 9
Q ss_pred cEEEEeccCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecC------CCCeEEEEEccCCCeEEEE
Q 036953 171 ECIGSCDFYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKT------RRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 171 ~~v~t~~h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h------~~sVtsVafSPdG~~LlaS 241 (792)
+.++.+.......++...++|++++++.++ +|..+|..+++... ..... -..+..+...++|..+++.
T Consensus 156 ~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w---~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 156 QLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR---RVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp CEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE---EEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE---EecCCCCCCccccccccceEcCCCCEEEEe
Confidence 999999876777788889999999888754 59999998887543 11111 1237788888998855443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-06 Score=91.31 Aligned_cols=166 Identities=11% Similarity=0.061 Sum_probs=119.4
Q ss_pred EEEEEe-CCCeEEEEeccCCCcC-----CC----CCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCcEEEEecCCCC
Q 036953 71 GLVSWV-EAESLRHLSAKYCPLV-----PP----PRSTIAAAFSPDGRTLASTH--GDHTVKIIDCQTGNCLKVLSGHRR 138 (792)
Q Consensus 71 ~L~S~s-~d~sIrvWd~~t~~L~-----gH----~~~V~sLafSPDG~~LaSGS--~DGtVrIWDl~tgk~v~~L~gH~~ 138 (792)
+++... .++.|.+||..+.++. +. ......+++ ++.+|+++. .++.|.+||+.+++.+..+.. ..
T Consensus 96 ~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~ 172 (328)
T 3dsm_A 96 KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GI 172 (328)
T ss_dssp EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SS
T ss_pred eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CC
Confidence 566655 6788888888765432 11 114556677 455666655 488999999999998887764 33
Q ss_pred CcEEEEEccCCCCEEEEEeCC----------CeEEEEECCCCcEEEEecc--CCCeeEEEEcCCCcEEEEEcCCeEEEEE
Q 036953 139 TPWVVRFHPLRSEILASGSLD----------HEVRLWDANTSECIGSCDF--YRPIASIAFHAEGELLAVASGHKLYIWP 206 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~D----------gtVrLWDl~tg~~v~t~~h--~s~V~sVafSpdG~~LasgSdd~V~IWD 206 (792)
....+.++| ++++++++..+ +.|.+||..+++.+..+.. ......++|+|++++|+++.. .|.+||
T Consensus 173 ~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d 250 (328)
T 3dsm_A 173 QPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMP 250 (328)
T ss_dssp CBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEE
T ss_pred CccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEE
Confidence 467899999 88887777655 7899999999988877653 447899999999999888766 799999
Q ss_pred CCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 207 YNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 207 lrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
..+.+...... ..........++++|++..+.++.
T Consensus 251 ~~t~~~~~~~~-~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 251 VEADRVPVRPF-LEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp TTCSSCCSSCS-BCCCSSCEEEEEECTTTCCEEEEE
T ss_pred CCCCceeeeee-ecCCCCceEEEEEcCCCCeEEEEc
Confidence 98776432111 111245688999999666676665
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-05 Score=81.28 Aligned_cols=140 Identities=9% Similarity=0.061 Sum_probs=100.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE-EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC-LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~-v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
+...+.+++++++|+.+++...++.|..||.. ++. ...+......+.++++.+ ++.++++...++.|..||. +++.
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCE
Confidence 34679999999999988877778899999986 432 222223556789999998 8888888777889999999 5554
Q ss_pred EEEe--ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 173 IGSC--DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 173 v~t~--~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
.... .....+..++++++|+++++.. ++.|..||. +++... .........+..++++++|+.++
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~~~~~~~~~i~~~~~g~l~v 198 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE--FKIPTPASGPVGITKGNDDALWF 198 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE--EECSSTTCCEEEEEECTTSSEEE
T ss_pred EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE--eeCCCCCCcceeEEECCCCCEEE
Confidence 4332 2346789999999998887766 467999998 444221 11122345688999999988443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.69 E-value=5.1e-06 Score=86.60 Aligned_cols=207 Identities=8% Similarity=0.035 Sum_probs=122.0
Q ss_pred eCCCeEEEEeccCCCc--CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC----CCCCcEEEEEccCC
Q 036953 76 VEAESLRHLSAKYCPL--VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG----HRRTPWVVRFHPLR 149 (792)
Q Consensus 76 s~d~sIrvWd~~t~~L--~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g----H~~~VtsVafSP~d 149 (792)
...+.|..|+..++.. ......+.+++++++|+++++ . ++.|.+||..+++....... ....+.+++++| +
T Consensus 32 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-d 108 (297)
T 3g4e_A 32 IPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-A 108 (297)
T ss_dssp TTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-T
T ss_pred CCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-C
Confidence 3455566666554422 123467999999999995554 4 56799999988765433321 123478899999 8
Q ss_pred CCEEEEEeCC---------CeEEEEECCC-CcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECC--CCCcccC
Q 036953 150 SEILASGSLD---------HEVRLWDANT-SECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYN--NKEEASS 215 (792)
Q Consensus 150 g~lLaSgS~D---------gtVrLWDl~t-g~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlr--t~~~~~~ 215 (792)
++++++...+ ..-.+|.+.. ++...........+.++|+|+++.|+.+. .++|.+||+. ++....
T Consensus 109 G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~- 187 (297)
T 3g4e_A 109 GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN- 187 (297)
T ss_dssp SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE-
T ss_pred CCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC-
Confidence 8877765322 2345554442 44443344445678999999998776654 5669999974 333211
Q ss_pred CeEE---ecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccC
Q 036953 216 PIIV---LKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSS 292 (792)
Q Consensus 216 ~~~~---~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~g 292 (792)
.... .........++++++|+.+++..... .+..+...+|..+.... .
T Consensus 188 ~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~-----------------------~v~~~d~~tG~~~~~i~------~ 238 (297)
T 3g4e_A 188 RRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG-----------------------RVIRLDPVTGKRLQTVK------L 238 (297)
T ss_dssp EEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT-----------------------EEEEECTTTCCEEEEEE------C
T ss_pred cEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC-----------------------EEEEEcCCCceEEEEEE------C
Confidence 1111 11235678899999997444332111 12222222344433322 1
Q ss_pred CCceEEEeEEC-CCCcEEEEcccc
Q 036953 293 LPFLIVPSVSI-DDSRIDLQHASR 315 (792)
Q Consensus 293 h~~~VwdV~~S-pDGr~lv~~~~~ 315 (792)
+...+.+++|. ||++.|++....
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCCceEEEEeCCCCCEEEEEcCC
Confidence 34578889998 898877744443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-06 Score=98.80 Aligned_cols=135 Identities=13% Similarity=0.047 Sum_probs=103.4
Q ss_pred CCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC--CCcEEEEeccCCCe
Q 036953 105 PDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN--TSECIGSCDFYRPI 182 (792)
Q Consensus 105 PDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~--tg~~v~t~~h~s~V 182 (792)
+.+..+++...++.|.+||..+++.+..+.. ...+..+.|+| |++++++++.|+.|.+||+. +++.+..+......
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC
Confidence 3445666777789999999999999888873 34577999999 99999999999999999996 78888888766677
Q ss_pred eEEEEc----CCCcEEEEEc--CCeEEEEECCCCCcccCCeEEec--------C-CCCeEEEEEccCCCeEEEEE
Q 036953 183 ASIAFH----AEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLK--------T-RRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 183 ~sVafS----pdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~--------h-~~sVtsVafSPdG~~LlaS~ 242 (792)
..++|+ |||+++++++ .+.|.++|..+.+.... ..... | ...+..+.+++++..++++.
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~-i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI-QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE-EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE-EeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence 899999 6999999887 56699999888775431 11111 1 22577788888776555443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-06 Score=101.87 Aligned_cols=186 Identities=9% Similarity=0.026 Sum_probs=117.6
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcC-CCCCCe--EEEEEcCCCCEEEEEECCC--
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLV-PPPRST--IAAAFSPDGRTLASTHGDH-- 117 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~-gH~~~V--~sLafSPDG~~LaSGS~DG-- 117 (792)
.+....|+|++++++.+. +.+ +.+...|++||+.+++.. .+...+ ..++|+ |++.|+.++.+.
T Consensus 130 ~l~~~~~SpDg~~lAy~~------~~~-----G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~ 197 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSL------SLA-----GSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPD 197 (693)
T ss_dssp EEEEEEECTTSSEEEEEE------ECS-----SCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC
T ss_pred EEEEEEECCCCCEEEEEE------ecC-----CCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcc
Confidence 456667888887765431 100 122346888888877532 222223 467999 999999998874
Q ss_pred -----------eEEEEECCCCcE--EEEec--C-CCCCcEEEEEccCCCCEEEEEe-C---CCeEEEEECCCC--cEEEE
Q 036953 118 -----------TVKIIDCQTGNC--LKVLS--G-HRRTPWVVRFHPLRSEILASGS-L---DHEVRLWDANTS--ECIGS 175 (792)
Q Consensus 118 -----------tVrIWDl~tgk~--v~~L~--g-H~~~VtsVafSP~dg~lLaSgS-~---DgtVrLWDl~tg--~~v~t 175 (792)
.|++|++.++.. ...+. . |...+..+.|+| |+++|+... . +..|++||+.++ +....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 399999987642 33333 3 455678899999 787765433 2 358999999876 34443
Q ss_pred eccCCCeeEEEEcCCCcEEEEEc-C----CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 176 CDFYRPIASIAFHAEGELLAVAS-G----HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 176 ~~h~s~V~sVafSpdG~~LasgS-d----d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
.......... |+++|..|+..+ . .+|..||+.++.... ...+..+...+. .|+++++.|+++....
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~--~~s~~g~~lv~~~~~~ 347 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH-WRDLIPERQQVL--TVHSGSGYLFAEYMVD 347 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG-CEEEECCCSSCE--EEEEETTEEEEEEEET
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc-cEEEecCCCCEE--EEEEECCEEEEEEEEC
Confidence 4444444444 566666555443 2 349999998765421 123444555554 8999999888776543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-05 Score=84.47 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=91.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC---C-CCCcEEEEEccCCCCEEEEEeC------CCeEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG---H-RRTPWVVRFHPLRSEILASGSL------DHEVRL 164 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g---H-~~~VtsVafSP~dg~lLaSgS~------DgtVrL 164 (792)
...+.+++|+++|+++++. .+ .|.+||..+++....... . ...+.+++++| +++++++... .+.|..
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEE
Confidence 3569999999999877654 44 499999988875433221 1 23578999999 8887776542 245666
Q ss_pred EECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECC--CC-CcccCCeEEe---cCCCCeEEEEEccCCC
Q 036953 165 WDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYN--NK-EEASSPIIVL---KTRRSLRAVHFHPHAA 236 (792)
Q Consensus 165 WDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlr--t~-~~~~~~~~~~---~h~~sVtsVafSPdG~ 236 (792)
+| +++...........+.++|+++++.|+.+. ++.|.+||+. ++ +... ..... ........++++++|.
T Consensus 166 ~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-~~~~~~~~~~~~~p~gi~~d~~G~ 242 (326)
T 2ghs_A 166 VA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-AEVFIDSTGIKGGMDGSVCDAEGH 242 (326)
T ss_dssp EE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-CEEEEECTTSSSEEEEEEECTTSC
T ss_pred Ee--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC-ceEEEECCCCCCCCCeeEECCCCC
Confidence 66 555443333445678999999998776654 4569999986 44 2211 11111 1234567889999997
Q ss_pred eEEEE
Q 036953 237 PFVLT 241 (792)
Q Consensus 237 ~LlaS 241 (792)
.++++
T Consensus 243 lwva~ 247 (326)
T 2ghs_A 243 IWNAR 247 (326)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.1e-06 Score=86.85 Aligned_cols=140 Identities=13% Similarity=0.097 Sum_probs=92.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec---CC-CCCcEEEEEccCCCCEEEE----EeC-------
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS---GH-RRTPWVVRFHPLRSEILAS----GSL------- 158 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~---gH-~~~VtsVafSP~dg~lLaS----gS~------- 158 (792)
+...+..++++++|+.+++...++.|.+||.. ++...... +. ...+.++++++ ++++++| +..
T Consensus 84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~ 161 (305)
T 3dr2_A 84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCP 161 (305)
T ss_dssp SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCC
T ss_pred CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccc
Confidence 34568999999999977666666889999986 55332221 11 23577899999 8888886 332
Q ss_pred ------CCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-C------CeEEEEECCCCCcccCCeEE-ecCCC
Q 036953 159 ------DHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-G------HKLYIWPYNNKEEASSPIIV-LKTRR 224 (792)
Q Consensus 159 ------DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-d------d~V~IWDlrt~~~~~~~~~~-~~h~~ 224 (792)
.+.|..||..+++..... .....+.++|+|+++.|+++. . +.|++||+.... ....... .....
T Consensus 162 ~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 162 ADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDG 239 (305)
T ss_dssp CCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSS
T ss_pred cccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCC
Confidence 256888888777655444 445678899999999777765 3 469999987543 1101111 11223
Q ss_pred CeEEEEEccCCCe
Q 036953 225 SLRAVHFHPHAAP 237 (792)
Q Consensus 225 sVtsVafSPdG~~ 237 (792)
....++++++|+.
T Consensus 240 ~pdgi~~d~~G~l 252 (305)
T 3dr2_A 240 LPDGFCVDRGGWL 252 (305)
T ss_dssp CCCSEEECTTSCE
T ss_pred CCCeEEECCCCCE
Confidence 3456788888883
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=0.00011 Score=74.41 Aligned_cols=142 Identities=11% Similarity=0.082 Sum_probs=102.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE-EecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK-VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~-~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
....+..++++++++.+++...++.|.+||. +++... .+..+...+.++++.+ +++++++...++.|..||. +++.
T Consensus 97 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~ 173 (299)
T 2z2n_A 97 PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDI 173 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCE
T ss_pred cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcE
Confidence 3457899999999988887777889999998 555433 2334556789999999 7888887777889999999 6665
Q ss_pred EEE-e-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 173 IGS-C-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 173 v~t-~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
... . .....+..++++++|+++++.. ++.|.+||. +++... .........+.+++++++|+ +.++.
T Consensus 174 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~~~~~~~~~i~~~~~g~-l~v~~ 242 (299)
T 2z2n_A 174 TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE--FKIPTPNARPHAITAGAGID-LWFTE 242 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECSSTTCCEEEEEECSTTC-EEEEE
T ss_pred EEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE--EECCCCCCCceeEEECCCCC-EEEec
Confidence 543 2 2345688999999999777665 567999998 544211 11222446789999999998 44443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-05 Score=83.20 Aligned_cols=142 Identities=12% Similarity=0.128 Sum_probs=98.1
Q ss_pred CCCCCeEEEEEcCCCCEEEE-------EECCCeEEEEECCCCcEEEEec----CCCCCcEEEEEccCC-CCEEEEEeCCC
Q 036953 93 PPPRSTIAAAFSPDGRTLAS-------THGDHTVKIIDCQTGNCLKVLS----GHRRTPWVVRFHPLR-SEILASGSLDH 160 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaS-------GS~DGtVrIWDl~tgk~v~~L~----gH~~~VtsVafSP~d-g~lLaSgS~Dg 160 (792)
..-....+++|+++++.+++ +..++.|.+||..+++...... ++...+.++.+++ + ++++++. .++
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~-~~~ 92 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVAD-MRL 92 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEE-TTT
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEE-CCC
Confidence 33445789999999988877 5778899999988877543222 2557789999999 6 6655554 445
Q ss_pred eEEEEECCCCcEEEE-ec-----cCCCeeEEEEcCCCcEEEEEcC----------------CeEEEEECCCCCcccCCeE
Q 036953 161 EVRLWDANTSECIGS-CD-----FYRPIASIAFHAEGELLAVASG----------------HKLYIWPYNNKEEASSPII 218 (792)
Q Consensus 161 tVrLWDl~tg~~v~t-~~-----h~s~V~sVafSpdG~~LasgSd----------------d~V~IWDlrt~~~~~~~~~ 218 (792)
.|.+||.. ++.... .. ....+.+++++++|+++++... +.|..||.. ++. ..
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~----~~ 166 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM----IQ 166 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE----EE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE----EE
Confidence 79999998 765543 22 1235789999999998877753 347777765 332 12
Q ss_pred EecCCCCeEEEEEc----cCCCeEEEEE
Q 036953 219 VLKTRRSLRAVHFH----PHAAPFVLTA 242 (792)
Q Consensus 219 ~~~h~~sVtsVafS----PdG~~LlaS~ 242 (792)
...+......++|+ |+++.++++.
T Consensus 167 ~~~~~~~~~~i~~~~~~d~dg~~l~v~~ 194 (314)
T 1pjx_A 167 VDTAFQFPNGIAVRHMNDGRPYQLIVAE 194 (314)
T ss_dssp EEEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred eccCCCCcceEEEecccCCCCCEEEEEE
Confidence 22333456889999 9997666654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.6e-06 Score=97.74 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=98.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCe-------
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGD-----HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE------- 161 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~D-----GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt------- 161 (792)
|...+..++|||||++|+.++.+ .+|++||+.+++.+.... +...+..++|+| | +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEEST-T-SEEEEEECCCC-------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEEC-C-CEEEEEEecCcccccccc
Confidence 33468899999999999887654 469999999998754321 222245789999 7 88888776654
Q ss_pred -------EEEEECCCCcE--EEEec---cCCCeeEEEEcCCCcEEEEEc-CC-----eEEEEECCCCCcccCCeEEecCC
Q 036953 162 -------VRLWDANTSEC--IGSCD---FYRPIASIAFHAEGELLAVAS-GH-----KLYIWPYNNKEEASSPIIVLKTR 223 (792)
Q Consensus 162 -------VrLWDl~tg~~--v~t~~---h~s~V~sVafSpdG~~LasgS-dd-----~V~IWDlrt~~~~~~~~~~~~h~ 223 (792)
|++|++.+++. ...+. +...+..+.|+|||++|+..+ ++ .|++||+.++.... ...+..+.
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~ 316 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP-VTALIPDL 316 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC-CEEEECSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc-cEEecCCC
Confidence 89999987652 23332 223588999999999888765 22 59999997762110 12333444
Q ss_pred CCeEEEEEccCCCeEEEEEe
Q 036953 224 RSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s 243 (792)
..+.... +|+|+.|++.+.
T Consensus 317 ~~~~~~~-~~dg~~l~~~s~ 335 (741)
T 1yr2_A 317 KAQWDFV-DGVGDQLWFVSG 335 (741)
T ss_dssp SSCEEEE-EEETTEEEEEEC
T ss_pred CceEEEE-eccCCEEEEEEC
Confidence 4455553 488998887764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-05 Score=87.79 Aligned_cols=166 Identities=11% Similarity=0.052 Sum_probs=106.0
Q ss_pred CcEEEEEe-CCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCcEEEEe----cCCCC
Q 036953 69 KRGLVSWV-EAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGRTLASTHGDH--TVKIIDCQTGNCLKVL----SGHRR 138 (792)
Q Consensus 69 ~~~L~S~s-~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~~LaSGS~DG--tVrIWDl~tgk~v~~L----~gH~~ 138 (792)
+..|+... .++.|+.|+...+.+. ....... ++|+++++.|+++..++ .|.+||...+.....+ .....
T Consensus 141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~ 219 (409)
T 3hrp_A 141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSG 219 (409)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCS
T ss_pred CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcC
Confidence 34454444 3577888887755321 1122233 99999999999988766 7999998766544444 22556
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE----ec-cCCCe--eEEEEcCCCcEEEEE-c-CCeEEEEECCC
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS----CD-FYRPI--ASIAFHAEGELLAVA-S-GHKLYIWPYNN 209 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t----~~-h~s~V--~sVafSpdG~~Lasg-S-dd~V~IWDlrt 209 (792)
.+.+++++| +...|+.+..++.|+.||..++..... .. ....- ..++|+|++..|+++ . .+.|+.||...
T Consensus 220 ~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 220 KIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp CCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred CcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence 788999999 444555577788999999988764332 11 11112 399999965444444 4 45699999764
Q ss_pred CCcccCCeEEecC---------------CCCeEEEEEccCCCeEEEEE
Q 036953 210 KEEASSPIIVLKT---------------RRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 210 ~~~~~~~~~~~~h---------------~~sVtsVafSPdG~~LlaS~ 242 (792)
... ....+ -.....++|+|+|+ |+++.
T Consensus 299 ~~~-----~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad 340 (409)
T 3hrp_A 299 ECE-----WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVD 340 (409)
T ss_dssp CEE-----EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEE
T ss_pred CEE-----EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEe
Confidence 311 11111 13478999999998 55443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-05 Score=83.92 Aligned_cols=237 Identities=9% Similarity=-0.034 Sum_probs=140.4
Q ss_pred ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEEC-----C
Q 036953 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHG-----D 116 (792)
Q Consensus 42 k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS~-----D 116 (792)
.....++++++++++.+.... .++...|+... ++.++-|-.......+|...+..++++++++.+++-.. +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~---~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQF---YQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGG---GCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCC---CCCceEEEEEC-CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence 456788888888875543110 01113555555 55554332111122356678999999999876665433 5
Q ss_pred CeEEEEECCCCcEEEEecC------CCCCcEEEEEccCCCCEEEEEe---CCCeEEEEECCCCcEEEEecc---------
Q 036953 117 HTVKIIDCQTGNCLKVLSG------HRRTPWVVRFHPLRSEILASGS---LDHEVRLWDANTSECIGSCDF--------- 178 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~g------H~~~VtsVafSP~dg~lLaSgS---~DgtVrLWDl~tg~~v~t~~h--------- 178 (792)
+.|.+||+.+++.+..+.. +...+..+++++.++..+++-. .++.|.+||+.+++....+..
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence 7899999999987766642 2245789999983455566665 688999999998876654421
Q ss_pred ---------------------CCCeeEEEEcCCCcEEEEEc-C-CeEEEEECCC---CCc----ccCCeEEecCCCCeEE
Q 036953 179 ---------------------YRPIASIAFHAEGELLAVAS-G-HKLYIWPYNN---KEE----ASSPIIVLKTRRSLRA 228 (792)
Q Consensus 179 ---------------------~s~V~sVafSpdG~~LasgS-d-d~V~IWDlrt---~~~----~~~~~~~~~h~~sVts 228 (792)
...+..++|+|+|+.|+++. . .+|+.++... ... .........+......
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 12368899999999888776 3 3466666421 110 0001112223334567
Q ss_pred EEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcE
Q 036953 229 VHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRI 308 (792)
Q Consensus 229 VafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~ 308 (792)
++++++|. +.++.... ..+..++..+|....+... + +......++++++|++
T Consensus 253 ia~d~~G~-l~va~~~~----------------------~~V~~~d~~~G~~~~~~~~-~----~~~~p~~va~~~~g~l 304 (343)
T 2qe8_A 253 ISIDKDHN-IYVGDLAH----------------------SAIGVITSADRAYKLLVTD-E----KLSWTDSFNFGSDGYL 304 (343)
T ss_dssp EEECTTCC-EEEEEGGG----------------------TEEEEEETTTTEEEEEEEC-G----GGSCEEEEEECTTSCE
T ss_pred EEECCCCC-EEEEccCC----------------------CeEEEEECCCCCEEEEEEC-C----ceecCCeeEECCCCcE
Confidence 89999987 44433211 1233333213333222221 1 2346788999999998
Q ss_pred EE
Q 036953 309 DL 310 (792)
Q Consensus 309 lv 310 (792)
++
T Consensus 305 ~v 306 (343)
T 2qe8_A 305 YF 306 (343)
T ss_dssp EE
T ss_pred EE
Confidence 87
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-05 Score=82.67 Aligned_cols=147 Identities=14% Similarity=0.110 Sum_probs=98.8
Q ss_pred CCeEEEEEcCCCCEEEEEECC---------CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE-EEEeCCCeEEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHGD---------HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL-ASGSLDHEVRLW 165 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~D---------GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL-aSgS~DgtVrLW 165 (792)
..++.++++|+|+.+++...+ ....||.+........+..+......++|+| +++.| ++.+.++.|.+|
T Consensus 98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~ 176 (297)
T 3g4e_A 98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAF 176 (297)
T ss_dssp EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEE
T ss_pred CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEE
Confidence 347899999999976654321 2345555543222333333445678999999 77655 556678899999
Q ss_pred EC--CCCcEE-----EEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEc-cCC
Q 036953 166 DA--NTSECI-----GSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFH-PHA 235 (792)
Q Consensus 166 Dl--~tg~~v-----~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafS-PdG 235 (792)
|+ .++... ..+. .......++++++|++.++.. ++.|.+||..+++... ....+...+++++|. |++
T Consensus 177 ~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~---~i~~p~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 177 DYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ---TVKLPVDKTTSCCFGGKNY 253 (297)
T ss_dssp EECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE---EEECSSSBEEEEEEESGGG
T ss_pred eccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE---EEECCCCCceEEEEeCCCC
Confidence 87 455432 1221 335678999999998777765 4569999998776432 233345679999998 899
Q ss_pred CeEEEEEeeCc
Q 036953 236 APFVLTAEVND 246 (792)
Q Consensus 236 ~~LlaS~s~~d 246 (792)
+.|++++....
T Consensus 254 ~~L~vt~~~~~ 264 (297)
T 3g4e_A 254 SEMYVTCARDG 264 (297)
T ss_dssp CEEEEEEBCTT
T ss_pred CEEEEEcCCcC
Confidence 98888876443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00027 Score=71.44 Aligned_cols=139 Identities=9% Similarity=0.009 Sum_probs=99.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE-EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL-KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v-~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
...+..++++++++.+++...++.|.+||.. ++.. ..+......+.++++.+ +++++++...++.|..||.. ++..
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~ 137 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIY 137 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEE
Confidence 4678999999999987777668899999987 5543 22233446789999998 88888887778899999987 5554
Q ss_pred EE-ec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 174 GS-CD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 174 ~t-~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
.. +. ....+..++++++|+++++.. ++.|..||. .++... .........+..++++++|..++
T Consensus 138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~~~~~~~~~i~~d~~g~l~v 203 (300)
T 2qc5_A 138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE--YPLPTNAAAPVGITSGNDGALWF 203 (300)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECSSTTCCEEEEEECTTSSEEE
T ss_pred EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE--eeCCCCCCCcceEEECCCCCEEE
Confidence 32 22 346789999999999766665 566999998 443211 11112345688999999987443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00013 Score=79.83 Aligned_cols=125 Identities=11% Similarity=-0.037 Sum_probs=82.7
Q ss_pred eEEEEeccCCCcCC---CCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEECCCCcEEEEecCC-------CCC
Q 036953 80 SLRHLSAKYCPLVP---PPRSTIAAAFSPDGRTLASTH----------GDHTVKIIDCQTGNCLKVLSGH-------RRT 139 (792)
Q Consensus 80 sIrvWd~~t~~L~g---H~~~V~sLafSPDG~~LaSGS----------~DGtVrIWDl~tgk~v~~L~gH-------~~~ 139 (792)
.+.++|..+.++.. -...- .++++|||++++++. .++.|.+||..+.+.+..+.-- ...
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~ 126 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY 126 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence 55666665543211 11123 899999999999886 3678999999988877766421 134
Q ss_pred cEEEEEccCCCCEEEEEeC--CCeEEEEECCCCcEEEE-eccCCCeeEEEEcCCCc--EEEEEcCCeEEEEECCCCC
Q 036953 140 PWVVRFHPLRSEILASGSL--DHEVRLWDANTSECIGS-CDFYRPIASIAFHAEGE--LLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~--DgtVrLWDl~tg~~v~t-~~h~s~V~sVafSpdG~--~LasgSdd~V~IWDlrt~~ 211 (792)
...+.|+| |+++|+.+.. +++|.++| .+++.+.. +..... +.+.++++ +++.+.++++.+||. +++
T Consensus 127 p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 127 SWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred ccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence 56899999 8898888774 57899999 99998888 654332 33344442 222223555666666 443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.4e-05 Score=83.03 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=98.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCC--eEEEEECCCCcEE
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH--EVRLWDANTSECI 173 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg--tVrLWDl~tg~~v 173 (792)
.....++|+++++.+++...++.|++||..+++........ .... ++|++ +++.|+.+..++ .|.+||...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 46889999999997777777899999999887766555443 3334 99999 888888887765 7999998776544
Q ss_pred EEe----c-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeE---EecCCCCe--EEEEEccCCCeEEEEE
Q 036953 174 GSC----D-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPII---VLKTRRSL--RAVHFHPHAAPFVLTA 242 (792)
Q Consensus 174 ~t~----~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~---~~~h~~sV--tsVafSPdG~~LlaS~ 242 (792)
..+ . ....+.+++++|++..|+++. ++.|+.||........ .. .......- ..++|+|++..|+++.
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~--~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL--IKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE--EEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE--EecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 444 2 456678999999544444444 5569999998765221 10 11111222 3899999766676665
Q ss_pred e
Q 036953 243 E 243 (792)
Q Consensus 243 s 243 (792)
.
T Consensus 286 ~ 286 (409)
T 3hrp_A 286 Q 286 (409)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.5e-05 Score=79.57 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=93.2
Q ss_pred CCeEEEEEcCCCCEEEE----EEC-------------CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC
Q 036953 96 RSTIAAAFSPDGRTLAS----THG-------------DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL 158 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaS----GS~-------------DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~ 158 (792)
..++.++++++|+.+++ |.. .+.|..||..+++..... .......++|+| +++.|+.+..
T Consensus 131 ~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~sp-dg~~lyv~~~ 207 (305)
T 3dr2_A 131 NSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSP-DEQTLYVSQT 207 (305)
T ss_dssp SCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECT-TSSEEEEEEC
T ss_pred CCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcC-CCCEEEEEec
Confidence 34678999999998886 332 246777887667654433 445678899999 8887766655
Q ss_pred C------CeEEEEECCCCcEE--EEe--ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEE
Q 036953 159 D------HEVRLWDANTSECI--GSC--DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRA 228 (792)
Q Consensus 159 D------gtVrLWDl~tg~~v--~t~--~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVts 228 (792)
. +.|.+||+..+... ..+ ........++++++|++.++ ..++|.+||.. ++.. ........+..
T Consensus 208 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~gv~~~~~~-g~~~----~~~~~~~~~~~ 281 (305)
T 3dr2_A 208 PEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGTGVCVFDSD-GQLL----GHIPTPGTASN 281 (305)
T ss_dssp CC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSSEEEEECTT-SCEE----EEEECSSCCCE
T ss_pred CCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCCcEEEECCC-CCEE----EEEECCCceeE
Confidence 4 78999998765411 111 12344567899999995544 45679999984 3322 12222235889
Q ss_pred EEEccCCCeEEEEEe
Q 036953 229 VHFHPHAAPFVLTAE 243 (792)
Q Consensus 229 VafSPdG~~LlaS~s 243 (792)
++|.++++.|.+++.
T Consensus 282 ~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 282 CTFDQAQQRLFITGG 296 (305)
T ss_dssp EEECTTSCEEEEEET
T ss_pred EEEeCCCCEEEEEcC
Confidence 999999988877764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00013 Score=79.80 Aligned_cols=155 Identities=10% Similarity=0.029 Sum_probs=92.4
Q ss_pred CCeEEEEeccCCCcCC-----------CCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCcEEEE-ecCCCCCcEEE
Q 036953 78 AESLRHLSAKYCPLVP-----------PPRSTIAAAFSPDGRTLASTHG--DHTVKIIDCQTGNCLKV-LSGHRRTPWVV 143 (792)
Q Consensus 78 d~sIrvWd~~t~~L~g-----------H~~~V~sLafSPDG~~LaSGS~--DGtVrIWDl~tgk~v~~-L~gH~~~VtsV 143 (792)
++.+.+||..+.+... +......++|+|||++|+++.. ++.|.++| .+++.+.. +.. .+. +
T Consensus 96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~~---~ 170 (373)
T 2mad_H 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PTC---Y 170 (373)
T ss_pred CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cce---E
Confidence 4567777765432211 0123458999999999999874 47899999 99988877 542 111 2
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEE--------------------------------------------------
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECI-------------------------------------------------- 173 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v-------------------------------------------------- 173 (792)
.+.|.....+++.+.|+++.+||. +++.+
T Consensus 171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~ 249 (373)
T 2mad_H 171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK 249 (373)
T ss_pred EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe
Confidence 233322334444445555555554 33222
Q ss_pred EEecc-----------CCCeeEEEEcCCCcEEEEEcC-----------CeEEEEECCCCCcccCCeEEecCCCCeEEEEE
Q 036953 174 GSCDF-----------YRPIASIAFHAEGELLAVASG-----------HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHF 231 (792)
Q Consensus 174 ~t~~h-----------~s~V~sVafSpdG~~LasgSd-----------d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVaf 231 (792)
..+.. ......+.++++++.++++.+ +.|.++|..+.+... ..........+.|
T Consensus 250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~----~i~~g~~p~~i~~ 325 (373)
T 2mad_H 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS----QISLGHDVDAISV 325 (373)
T ss_pred eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE----EEECCCCcCeEEE
Confidence 11100 111223678888887777542 359999998887543 2233345789999
Q ss_pred ccCCC-eEEEEE
Q 036953 232 HPHAA-PFVLTA 242 (792)
Q Consensus 232 SPdG~-~LlaS~ 242 (792)
+|||+ .++++.
T Consensus 326 s~Dg~~~l~v~~ 337 (373)
T 2mad_H 326 AQDGGPDLYALS 337 (373)
T ss_pred CCCCCeEEEEEc
Confidence 99999 454444
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.2e-05 Score=87.22 Aligned_cols=175 Identities=13% Similarity=0.176 Sum_probs=116.2
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCC----cCC----------C-CCCeEEEEEcCCCCEEEEEECC------CeEEEEECC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCP----LVP----------P-PRSTIAAAFSPDGRTLASTHGD------HTVKIIDCQ 125 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~----L~g----------H-~~~V~sLafSPDG~~LaSGS~D------GtVrIWDl~ 125 (792)
+.+..++.+..+..|.++|..+.. +.. . ...-..+..+|+| .++++..+ +.|.++|..
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence 344445556677889999986541 110 0 0123456788999 77766555 789999999
Q ss_pred CCcEEEEecCCC---CCcEEEEEccCCCCEEEEEe-------------------CCCeEEEEECCCCcEEEEeccC---C
Q 036953 126 TGNCLKVLSGHR---RTPWVVRFHPLRSEILASGS-------------------LDHEVRLWDANTSECIGSCDFY---R 180 (792)
Q Consensus 126 tgk~v~~L~gH~---~~VtsVafSP~dg~lLaSgS-------------------~DgtVrLWDl~tg~~v~t~~h~---s 180 (792)
+++.+..+..-. ..-..+-|+| +.+.+++.. .+.+|.+||+.+++.+.++... .
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 999998886221 2345688899 888888874 3789999999999888888653 2
Q ss_pred CeeEEEE--cCCCcEEEEEcC-------CeEEEEECCCCCcccCCeEEecC-----------------CCCeEEEEEccC
Q 036953 181 PIASIAF--HAEGELLAVASG-------HKLYIWPYNNKEEASSPIIVLKT-----------------RRSLRAVHFHPH 234 (792)
Q Consensus 181 ~V~sVaf--SpdG~~LasgSd-------d~V~IWDlrt~~~~~~~~~~~~h-----------------~~sVtsVafSPd 234 (792)
....+.| +|+++++++++. +.|.+|..+.++........... ......+.++||
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3445555 999998777653 34766665443211100000000 245678999999
Q ss_pred CCeEEEEEe
Q 036953 235 AAPFVLTAE 243 (792)
Q Consensus 235 G~~LlaS~s 243 (792)
|++|.++..
T Consensus 332 GrfLYVSnr 340 (462)
T 2ece_A 332 DKFLYLSLW 340 (462)
T ss_dssp SCEEEEEET
T ss_pred CCEEEEEeC
Confidence 999998876
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00014 Score=76.98 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=105.4
Q ss_pred cEEEEEeCCCeEEEEeccCCCcC---C----C-CCCeEEEEEcCCCCEEEEEEC------CCeEEEEECCCCcEEEEecC
Q 036953 70 RGLVSWVEAESLRHLSAKYCPLV---P----P-PRSTIAAAFSPDGRTLASTHG------DHTVKIIDCQTGNCLKVLSG 135 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~L~---g----H-~~~V~sLafSPDG~~LaSGS~------DGtVrIWDl~tgk~v~~L~g 135 (792)
..+|.+..+ .|.+|+..++++. . . ...+++++++++|+.+++... .+.|..+| +++.. .+..
T Consensus 101 g~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~ 176 (326)
T 2ghs_A 101 SKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFA 176 (326)
T ss_dssp TEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEE
T ss_pred CeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeC
Confidence 344444433 3667776544321 1 1 235889999999997765542 24555555 45433 3333
Q ss_pred CCCCcEEEEEccCCCCEE-EEEeCCCeEEEEECC--CC-c-----EEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEE
Q 036953 136 HRRTPWVVRFHPLRSEIL-ASGSLDHEVRLWDAN--TS-E-----CIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYI 204 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lL-aSgS~DgtVrLWDl~--tg-~-----~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~I 204 (792)
+......++|+| +++.+ ++.+.++.|.+||+. ++ + ....+. .......++++++|.+.++.. +++|.+
T Consensus 177 ~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 177 DISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp EESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred CCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 444678899999 77655 454567899999986 55 3 122222 234567899999998777664 467999
Q ss_pred EECCCCCcccCCeEEecCCCCeEEEEEc-cCCCeEEEEEeeC
Q 036953 205 WPYNNKEEASSPIIVLKTRRSLRAVHFH-PHAAPFVLTAEVN 245 (792)
Q Consensus 205 WDlrt~~~~~~~~~~~~h~~sVtsVafS-PdG~~LlaS~s~~ 245 (792)
||. .++... ........+++++|. ++++.|+++....
T Consensus 256 ~d~-~g~~~~---~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 256 YDT-DGNHIA---RYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp ECT-TCCEEE---EEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred ECC-CCCEEE---EEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 998 343221 223345579999998 8988887776544
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00014 Score=85.38 Aligned_cols=159 Identities=13% Similarity=0.102 Sum_probs=104.0
Q ss_pred CeEEEEeccCCC-----c---CC-CCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCc-EEEEecCCCCCcEEEE
Q 036953 79 ESLRHLSAKYCP-----L---VP-PPRSTIAAAFSPDGRTLASTHG----DHTVKIIDCQTGN-CLKVLSGHRRTPWVVR 144 (792)
Q Consensus 79 ~sIrvWd~~t~~-----L---~g-H~~~V~sLafSPDG~~LaSGS~----DGtVrIWDl~tgk-~v~~L~gH~~~VtsVa 144 (792)
..|.+|+..+.+ + .. |...+..+.|+|||++|+.... +..|++||+.+++ ....+..+.......
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~- 286 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL- 286 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-
T ss_pred cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-
Confidence 457777765442 1 22 3445788999999998865442 3589999998764 455666677666665
Q ss_pred EccCCCCEEEEEeCC---CeEEEEECCCCcE---EEEeccCCCeeEEEEcCCCcEEEEEc--CC--eEEEEECCCCCccc
Q 036953 145 FHPLRSEILASGSLD---HEVRLWDANTSEC---IGSCDFYRPIASIAFHAEGELLAVAS--GH--KLYIWPYNNKEEAS 214 (792)
Q Consensus 145 fSP~dg~lLaSgS~D---gtVrLWDl~tg~~---v~t~~h~s~V~sVafSpdG~~LasgS--dd--~V~IWDlrt~~~~~ 214 (792)
|+++++.+++....+ +.|..||+.++.. .....+...+. .|++++++|+... ++ .|++||+......
T Consensus 287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~- 363 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR- 363 (693)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEE-
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeE-
Confidence 555245555555544 5799999988654 33344444444 8899998887765 33 3999998754321
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 215 SPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 215 ~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.........+..+.++++++.++.+..
T Consensus 364 --~l~~p~~~~~~~~~~~~d~~~l~~~~s 390 (693)
T 3iuj_A 364 --EVALPGLGSVSGFNGKHDDPALYFGFE 390 (693)
T ss_dssp --EECCSSSSEEEECCCCTTCSCEEEEEE
T ss_pred --EeecCCCceEEeeecCCCCCEEEEEec
Confidence 122234456778888888887776654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00054 Score=69.15 Aligned_cols=165 Identities=12% Similarity=0.075 Sum_probs=111.2
Q ss_pred cEEEEEeC-CCeEEEEeccCCC-----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE-EecCCCCCcEE
Q 036953 70 RGLVSWVE-AESLRHLSAKYCP-----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK-VLSGHRRTPWV 142 (792)
Q Consensus 70 ~~L~S~s~-d~sIrvWd~~t~~-----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~-~L~gH~~~Vts 142 (792)
..+|.... ++.|..++.. ++ +......+.+++++++++.+++...++.|..||.. ++... .+......+.+
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 34444443 4556666654 22 12234668999999999988877768899999987 55442 23334567899
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEE
Q 036953 143 VRFHPLRSEILASGSLDHEVRLWDANTSECIGSC--DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIV 219 (792)
Q Consensus 143 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~--~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~ 219 (792)
+++.+ +++++++...++.|..||. +++..... .....+..++++++|+++++.. .+.|.+||. .++... ...
T Consensus 151 i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~ 225 (300)
T 2qc5_A 151 ITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE--YDI 225 (300)
T ss_dssp EEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EEC
T ss_pred EEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE--EEC
Confidence 99999 7887777777889999998 55544322 2345688999999998777765 456999998 333211 111
Q ss_pred ecCCCCeEEEEEccCCCeEEEEE
Q 036953 220 LKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 220 ~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
......+.+++++++|+ +.++.
T Consensus 226 ~~~~~~~~~i~~d~~g~-l~v~~ 247 (300)
T 2qc5_A 226 PTPNARPHAITAGKNSE-IWFTE 247 (300)
T ss_dssp SSTTCCEEEEEECSTTC-EEEEE
T ss_pred CCCCCCceEEEECCCCC-EEEec
Confidence 22456688999999998 44443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.23 E-value=6.9e-05 Score=83.03 Aligned_cols=209 Identities=13% Similarity=0.089 Sum_probs=127.1
Q ss_pred CCeEEEEeccCCCcCC-----C------CCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 78 AESLRHLSAKYCPLVP-----P------PRSTIAAAFSPDGRTLASTHG--DHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 78 d~sIrvWd~~t~~L~g-----H------~~~V~sLafSPDG~~LaSGS~--DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
++.|.+||..+.+... . ......++|+|||++++++.. ++.|.++|+.+++.+..+.-- + . ...
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g-~-~~~ 184 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D-C-YHI 184 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-S-E-EEE
T ss_pred CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C-c-cee
Confidence 5678888887664321 1 124557899999999998874 689999999999998888632 1 1 222
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCC-CcEEEEe-cc----CCCe-eEEEEc-CCCcEEEEEcCCeEEEEECCCCCcc-cC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANT-SECIGSC-DF----YRPI-ASIAFH-AEGELLAVASGHKLYIWPYNNKEEA-SS 215 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~t-g~~v~t~-~h----~s~V-~sVafS-pdG~~LasgSdd~V~IWDlrt~~~~-~~ 215 (792)
+ |.+.+.+++.+.||++.+.++.+ ++.+... .. ..++ ....|. ++|++++++.++.|++.|+...... ..
T Consensus 185 ~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~ 263 (386)
T 3sjl_D 185 F-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP 263 (386)
T ss_dssp E-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECC
T ss_pred e-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeec
Confidence 3 43567778888999999999976 5543322 11 1122 224664 7888777777778999999765421 11
Q ss_pred CeEEec--------CCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeecc
Q 036953 216 PIIVLK--------TRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAEL 287 (792)
Q Consensus 216 ~~~~~~--------h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l 287 (792)
+..... ....+..+.++|+++.+++......- +..+.+...+.+.+..+.+.+....
T Consensus 264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~-------------~~hk~~~~~V~viD~~t~kv~~~i~-- 328 (386)
T 3sjl_D 264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE-------------WRHKTASRFVVVLDAKTGERLAKFE-- 328 (386)
T ss_dssp CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT-------------TCTTSCEEEEEEEETTTCCEEEEEE--
T ss_pred ceeccccccccccccCCCcceeeECCCCCeEEEEeccccc-------------cccCCCCCEEEEEECCCCeEEEEEE--
Confidence 111000 11233357779999988877643210 0001112234444545555433322
Q ss_pred CcccCCCceEEEeEECCCCc-EEE
Q 036953 288 PLMSSLPFLIVPSVSIDDSR-IDL 310 (792)
Q Consensus 288 ~~l~gh~~~VwdV~~SpDGr-~lv 310 (792)
-...+|.+.+++||+ .|+
T Consensus 329 -----vg~~~~~lavs~D~~~~ly 347 (386)
T 3sjl_D 329 -----MGHEIDSINVSQDEKPLLY 347 (386)
T ss_dssp -----EEEEECEEEECSSSSCEEE
T ss_pred -----CCCCcceEEECCCCCeEEE
Confidence 123788999999997 555
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.2e-05 Score=83.89 Aligned_cols=97 Identities=12% Similarity=0.038 Sum_probs=73.8
Q ss_pred CeEEEEeccCCCcCC----CCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEECCCCcEEEEecCC-------C
Q 036953 79 ESLRHLSAKYCPLVP----PPRSTIAAAFSPDGRTLASTH----------GDHTVKIIDCQTGNCLKVLSGH-------R 137 (792)
Q Consensus 79 ~sIrvWd~~t~~L~g----H~~~V~sLafSPDG~~LaSGS----------~DGtVrIWDl~tgk~v~~L~gH-------~ 137 (792)
+.|.++|..+.++.+ -..+ .++++||+++|+++. .++.|.++|..+++.+..+.-- .
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 577777777654321 1223 899999999998876 3678999999999988777521 2
Q ss_pred CCcEEEEEccCCCCEEEEEeC--CCeEEEEECCCCcEEEEecc
Q 036953 138 RTPWVVRFHPLRSEILASGSL--DHEVRLWDANTSECIGSCDF 178 (792)
Q Consensus 138 ~~VtsVafSP~dg~lLaSgS~--DgtVrLWDl~tg~~v~t~~h 178 (792)
.....+.|+| |+++++.+.. +++|.+.|+.+++.+..+..
T Consensus 177 ~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 177 TYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp CCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred CCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence 3456799999 8888888764 58899999999998887754
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00013 Score=77.62 Aligned_cols=147 Identities=9% Similarity=0.004 Sum_probs=94.9
Q ss_pred CCCeEEEEEcCCCCEEEEE-E---CCCeEEEEECCCCcEEEEecCCC-----------------------------CCcE
Q 036953 95 PRSTIAAAFSPDGRTLAST-H---GDHTVKIIDCQTGNCLKVLSGHR-----------------------------RTPW 141 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSG-S---~DGtVrIWDl~tgk~v~~L~gH~-----------------------------~~Vt 141 (792)
...+..+++++++..++.+ . .++.|.+||+.+++..+.+.+|. ..+.
T Consensus 119 ~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~ 198 (343)
T 2qe8_A 119 NSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVN 198 (343)
T ss_dssp TCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEE
T ss_pred ccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccc
Confidence 3457899999865555444 4 57899999999888766665431 2358
Q ss_pred EEEEccCCCCEEEEEeCCC-eEEEEECC---CCc--------EEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECC
Q 036953 142 VVRFHPLRSEILASGSLDH-EVRLWDAN---TSE--------CIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYN 208 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~Dg-tVrLWDl~---tg~--------~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlr 208 (792)
+++|+| +++.|+.+..++ .+..++.. .+. .+..+........++++++|.++++.. ++.|.+||..
T Consensus 199 gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~ 277 (343)
T 2qe8_A 199 GIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSA 277 (343)
T ss_dssp EEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETT
T ss_pred eeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECC
Confidence 899999 888888777665 44444421 111 011222334567899999998888876 5669999984
Q ss_pred CCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 209 NKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 209 t~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
+++.. .............++|.+++..++++...
T Consensus 278 ~G~~~--~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 278 DRAYK--LLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp TTEEE--EEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred CCCEE--EEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 44321 11111224568899999998855555433
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00022 Score=75.21 Aligned_cols=169 Identities=12% Similarity=0.059 Sum_probs=115.0
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCC--CCCCeE--EEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVP--PPRSTI--AAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~g--H~~~V~--sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
+....+...++.|+.+|..++++.. -..... .+++ ++++|+.. -.++.+.+||..+.+.+.++.-- ..-+++
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGL 141 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGL 141 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEE
Confidence 3344444566779999988775432 122333 3444 44455444 46889999999999999988742 333556
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC------CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCC
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY------RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSP 216 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~------s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~ 216 (792)
++ +++.|+.+..+++|.++|..+.+.+..+... ..++.+.|. +|++++... ++.|.+.|.++++... .
T Consensus 142 t~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~-~ 216 (268)
T 3nok_A 142 CY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVG-V 216 (268)
T ss_dssp EE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEE-E
T ss_pred ec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEE-E
Confidence 64 4566666666889999999999988887421 256778887 776555553 5679999999988543 1
Q ss_pred eEEe-----------cCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 217 IIVL-----------KTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 217 ~~~~-----------~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
.... ...+-.+.++|+|+++.|+++++.|
T Consensus 217 Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~W 256 (268)
T 3nok_A 217 IDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLW 256 (268)
T ss_dssp EECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTC
T ss_pred EECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCC
Confidence 1111 1234679999999999999999987
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.00 E-value=8.6e-05 Score=86.26 Aligned_cols=171 Identities=9% Similarity=-0.032 Sum_probs=119.2
Q ss_pred cEEEEEe-CCCeEEEEeccCCCc-----CCCCCCeEEEEE-c-CCCCEEEEEE------------------CCCeEEEEE
Q 036953 70 RGLVSWV-EAESLRHLSAKYCPL-----VPPPRSTIAAAF-S-PDGRTLASTH------------------GDHTVKIID 123 (792)
Q Consensus 70 ~~L~S~s-~d~sIrvWd~~t~~L-----~gH~~~V~sLaf-S-PDG~~LaSGS------------------~DGtVrIWD 123 (792)
..++... .+..|.+.|..+.+. .........+++ + |++++++.++ .++.+.++|
T Consensus 102 ~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID 181 (595)
T 1fwx_A 102 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD 181 (595)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEE
Confidence 3444444 456788888877542 123456889998 5 8999998885 245899999
Q ss_pred CCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCC--------------------------------------eEEEE
Q 036953 124 CQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH--------------------------------------EVRLW 165 (792)
Q Consensus 124 l~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg--------------------------------------tVrLW 165 (792)
..+.+.+.++.--. ....++++| +++++++.+.+. .|.+.
T Consensus 182 ~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 182 ADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp TTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred CCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 99999888876322 456788999 888888887553 47777
Q ss_pred ECCC--CcE-EEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCc--------ccCCeEEecCCCCeEEEEEc
Q 036953 166 DANT--SEC-IGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEE--------ASSPIIVLKTRRSLRAVHFH 232 (792)
Q Consensus 166 Dl~t--g~~-v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~--------~~~~~~~~~h~~sVtsVafS 232 (792)
|.++ ++. +..+.......++.++|||+++++++ +++|.++|+.+.+. .........-...-..++|+
T Consensus 260 D~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~ 339 (595)
T 1fwx_A 260 DGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFD 339 (595)
T ss_dssp ECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEEC
T ss_pred eCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEEC
Confidence 8777 444 55665555667899999999999987 56699999986531 00011112223456789999
Q ss_pred cCCCeEEEEEe
Q 036953 233 PHAAPFVLTAE 243 (792)
Q Consensus 233 PdG~~LlaS~s 243 (792)
|+| ++.++..
T Consensus 340 ~dG-~aY~t~~ 349 (595)
T 1fwx_A 340 GRG-NAYTSLF 349 (595)
T ss_dssp TTS-EEEEEET
T ss_pred CCC-eEEEEEe
Confidence 999 6766654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0002 Score=80.81 Aligned_cols=147 Identities=11% Similarity=0.065 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCEEEEEE-------------------CCCeEEEEECCCCcEEEEecCC--CCCcEEEEE--ccCCCCEEE
Q 036953 98 TIAAAFSPDGRTLASTH-------------------GDHTVKIIDCQTGNCLKVLSGH--RRTPWVVRF--HPLRSEILA 154 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS-------------------~DGtVrIWDl~tgk~v~~L~gH--~~~VtsVaf--SP~dg~lLa 154 (792)
-+.+.|+|+++.+++.. .+.+|.+||+.+++.+.++.-- ......+.| +| ++++++
T Consensus 190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-dg~~aY 268 (462)
T 2ece_A 190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-TKLMGF 268 (462)
T ss_dssp CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-TCCEEE
T ss_pred cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-CCCEEE
Confidence 44688999999888874 3689999999998888877642 134556666 99 777766
Q ss_pred EEe------CCCeEEEEECCCCcE--EEEe--cc-----------------CCCeeEEEEcCCCcEEEEEc--CCeEEEE
Q 036953 155 SGS------LDHEVRLWDANTSEC--IGSC--DF-----------------YRPIASIAFHAEGELLAVAS--GHKLYIW 205 (792)
Q Consensus 155 SgS------~DgtVrLWDl~tg~~--v~t~--~h-----------------~s~V~sVafSpdG~~LasgS--dd~V~IW 205 (792)
.+. .+++|.+|....++. ++.+ .. ......|.+++||++|+++. .+.|.+|
T Consensus 269 V~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavf 348 (462)
T 2ece_A 269 INMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQY 348 (462)
T ss_dssp EEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEE
T ss_pred EEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEE
Confidence 655 567888776655421 1111 00 24578899999999999987 5669999
Q ss_pred ECCCCCcccCCeEE-ecCC---------C----CeEEEEEccCCCeEEEEEeeC
Q 036953 206 PYNNKEEASSPIIV-LKTR---------R----SLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 206 Dlrt~~~~~~~~~~-~~h~---------~----sVtsVafSPdG~~LlaS~s~~ 245 (792)
|+............ .+.. . .-..+.++|||++|+++.+++
T Consensus 349 dV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~ 402 (462)
T 2ece_A 349 DISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNSLY 402 (462)
T ss_dssp ECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECCCC
T ss_pred EecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcCCc
Confidence 98644322211111 1111 1 247789999999999998744
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00025 Score=74.63 Aligned_cols=160 Identities=9% Similarity=0.081 Sum_probs=107.2
Q ss_pred eEEEEeccCCCcCC---CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEE
Q 036953 80 SLRHLSAKYCPLVP---PPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILAS 155 (792)
Q Consensus 80 sIrvWd~~t~~L~g---H~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaS 155 (792)
.|+.+|..++++.. -..........++++.|+... .++.+.+||..+.+.+.++.--. .-++++ + +++.|+.
T Consensus 66 ~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt--~-dg~~L~~ 141 (262)
T 3nol_A 66 SIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLT--H-NDQYLIM 141 (262)
T ss_dssp EEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEE--E-CSSCEEE
T ss_pred eEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEe--c-CCCEEEE
Confidence 78888887764321 122333333333456666555 58899999999999999887422 224455 4 4455555
Q ss_pred EeCCCeEEEEECCCCcEEEEecc---C---CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEe--------
Q 036953 156 GSLDHEVRLWDANTSECIGSCDF---Y---RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVL-------- 220 (792)
Q Consensus 156 gS~DgtVrLWDl~tg~~v~t~~h---~---s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~-------- 220 (792)
...+++|.++|..+.+.+..+.. . ..++.+.|. +|+.++..- ++.|.+.|.++++... .....
T Consensus 142 SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~-~Id~~~L~~~~~~ 219 (262)
T 3nol_A 142 SDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTG-IIDLNGILAEAGP 219 (262)
T ss_dssp CCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEE-EEECTTGGGGSCS
T ss_pred ECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEE-EEECCcCcccccc
Confidence 55578899999999988888742 1 345668886 776555553 5679999999988543 11110
Q ss_pred --cCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 221 --KTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 221 --~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
...+-.+.++|+|+++.|+++++.|
T Consensus 220 ~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 220 LPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp CCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred ccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 1124679999999999999999987
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00046 Score=72.73 Aligned_cols=161 Identities=11% Similarity=0.037 Sum_probs=107.1
Q ss_pred CCeEEEEeccCCCcC-----CCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC
Q 036953 78 AESLRHLSAKYCPLV-----PPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE 151 (792)
Q Consensus 78 d~sIrvWd~~t~~L~-----gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~ 151 (792)
+..|+++|..++++. +.......+++. ++.|+.+. .++.+.++|..+.+.+..+.--... ...+++ |++
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~-Dg~ 117 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLAT-DGK 117 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEE-CSS
T ss_pred CCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEE-CCC
Confidence 456777777766422 111122345554 55666555 5789999999999999888622122 233455 555
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEeccC------CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEec---
Q 036953 152 ILASGSLDHEVRLWDANTSECIGSCDFY------RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLK--- 221 (792)
Q Consensus 152 lLaSgS~DgtVrLWDl~tg~~v~t~~h~------s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~--- 221 (792)
.++.+..+++|.++|..+.+.+..+... ..++.+.|. +|+.++... ++.|.+.|..+++... .....+
T Consensus 118 ~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~-~I~~~g~~~ 195 (266)
T 2iwa_A 118 ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLG-WILLPNLRK 195 (266)
T ss_dssp SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEE-EEECHHHHH
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEE-EEECCCccc
Confidence 5555557889999999999888887422 246788888 776555543 5679999999988543 111111
Q ss_pred --------CCCCeEEEEEccCCCeEEEEEeeC
Q 036953 222 --------TRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 222 --------h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
.....+.++|+|+++.++++++.|
T Consensus 196 ~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 196 KLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp HHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred ccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 114568999999999999999866
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00014 Score=80.63 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=88.8
Q ss_pred EEEcCCCCEEEEEEC-----CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe----------CCCeEEEE
Q 036953 101 AAFSPDGRTLASTHG-----DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS----------LDHEVRLW 165 (792)
Q Consensus 101 LafSPDG~~LaSGS~-----DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS----------~DgtVrLW 165 (792)
....|+++++++... ++.|.++|..+++.+..+..-..+ . +.++| |+++++.+. .++.|.+|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~sp-DG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVAD-DGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECC-CCCEEEEEcccccccccCCCCCEEEEE
Confidence 455689999988876 679999999999999888754444 4 99999 888776664 36789999
Q ss_pred ECCCCcEEEEeccC--------CCeeEEEEcCCCcEEEEEc---CCeEEEEECCCCCccc
Q 036953 166 DANTSECIGSCDFY--------RPIASIAFHAEGELLAVAS---GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 166 Dl~tg~~v~t~~h~--------s~V~sVafSpdG~~LasgS---dd~V~IWDlrt~~~~~ 214 (792)
|..+.+.+..+... .....+.|+|||++|+++. ++.|.++|+.+.+...
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 174 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence 99999998887432 2466799999999988875 3569999999987543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0011 Score=68.98 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=107.1
Q ss_pred CeEEEEeccCCCcCC---CCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEE
Q 036953 79 ESLRHLSAKYCPLVP---PPRSTIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILA 154 (792)
Q Consensus 79 ~sIrvWd~~t~~L~g---H~~~V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLa 154 (792)
..|+.+|..++++.. -...........++++|+.. -.++.+.+||..+.+.+.++.-- +.-+++++ +++.|+
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~-~~Gwglt~---dg~~L~ 118 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP-GEGWALTS---DDSHLY 118 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS-SCCCEEEE---CSSCEE
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC-CCceEEee---CCCEEE
Confidence 367788877664321 11223223233335555554 45889999999999999998743 23355654 344444
Q ss_pred EEeCCCeEEEEECCCCcEEEEeccC------CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEe-------
Q 036953 155 SGSLDHEVRLWDANTSECIGSCDFY------RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVL------- 220 (792)
Q Consensus 155 SgS~DgtVrLWDl~tg~~v~t~~h~------s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~------- 220 (792)
.+..+++|.++|..+.+.+..+... ..++.+.|. +|+.++..- ++.|.+.|.++++... .....
T Consensus 119 vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~-~idl~~l~~~~~ 196 (243)
T 3mbr_X 119 MSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA-WIDLQALVPDAD 196 (243)
T ss_dssp EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE-EEECGGGSTTTT
T ss_pred EECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE-EEECCcCccccc
Confidence 4455889999999999888887432 356777776 676655553 6679999999988543 11111
Q ss_pred ----cCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 221 ----KTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 221 ----~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
...+-.+.++|+|+++.|+++++.|
T Consensus 197 ~~~~~~~~vlNGIA~d~~~~~lfVTGK~w 225 (243)
T 3mbr_X 197 ALTDSTNDVLNGIAFDAEHDRLFVTGKRW 225 (243)
T ss_dssp SCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred cccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence 1224679999999999999999977
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=3.6e-06 Score=91.54 Aligned_cols=141 Identities=11% Similarity=0.004 Sum_probs=73.7
Q ss_pred CCcEEEEEeCCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCC-CcE-E
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR-TPW-V 142 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~-~Vt-s 142 (792)
.+..++.+..++.+..||..++++. .. +.+.+..+..+++.+++++.|+.|+.||..+|+.+..+..+.. .+. .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 4567788888888999998776431 11 3444444556777888888999999999999988777654321 110 0
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCccc
Q 036953 143 VRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 143 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
..+. ++..+++++.|+.|+.||.++|+.++.+..... ..++|++..+++++ ++.|+.||.++++...
T Consensus 87 p~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 87 PCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp SCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 1111 345678888899999999999999888754432 34566777888777 4569999999887543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.004 Score=65.49 Aligned_cols=138 Identities=13% Similarity=0.071 Sum_probs=91.6
Q ss_pred CeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecC-CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 97 STIAAAFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSG-HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~g-H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
....+.|++|+ .|+.++. ++.|.++|+.+++.+..+.- ......++.+.. +.+.++.-.++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCcE
Confidence 36799999986 4554442 57999999999998888752 222334566653 45556666789999999999999
Q ss_pred EEEeccC-CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC---CCCeEEEEEccCCCeEEEEE
Q 036953 173 IGSCDFY-RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT---RRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 173 v~t~~h~-s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h---~~sVtsVafSPdG~~LlaS~ 242 (792)
+.++... ..- ..+++||+.|+++. ++.|.++|..+.+... ....... -..++.+.|. +|. +.+..
T Consensus 99 ~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~-~I~Vg~~~~p~~~~nele~~-dg~-lyvn~ 168 (266)
T 2iwa_A 99 IKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIK-KHNVKYNGHRVIRLNELEYI-NGE-VWANI 168 (266)
T ss_dssp EEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEE-EEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred EEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEE-EEEECCCCcccccceeEEEE-CCE-EEEec
Confidence 9988654 332 33455777666655 5669999998877543 1111111 1246788888 663 55443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00067 Score=79.98 Aligned_cols=139 Identities=11% Similarity=0.127 Sum_probs=97.0
Q ss_pred EEcCCC---CEEEEEECCCeEEEEECCCCcEEEEecCCC-----------CCc------------------------EEE
Q 036953 102 AFSPDG---RTLASTHGDHTVKIIDCQTGNCLKVLSGHR-----------RTP------------------------WVV 143 (792)
Q Consensus 102 afSPDG---~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~-----------~~V------------------------tsV 143 (792)
....+| +.++.++.+|.++++|..+|+.+..+.... ..+ ..+
T Consensus 319 ~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~ 398 (677)
T 1kb0_A 319 DIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPM 398 (677)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCC
T ss_pred ecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCc
Confidence 333477 678999999999999999999887665211 001 146
Q ss_pred EEccCCCCEEEEEeC-------------------------------------------CCeEEEEECCCCcEEEEeccCC
Q 036953 144 RFHPLRSEILASGSL-------------------------------------------DHEVRLWDANTSECIGSCDFYR 180 (792)
Q Consensus 144 afSP~dg~lLaSgS~-------------------------------------------DgtVrLWDl~tg~~v~t~~h~s 180 (792)
+|+| +..+++.... .+.|..||+.+++.++.+.+..
T Consensus 399 a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~ 477 (677)
T 1kb0_A 399 SFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS 477 (677)
T ss_dssp EEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS
T ss_pred eEcC-CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC
Confidence 8888 6667766543 2789999999999999987766
Q ss_pred CeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 181 PIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 181 ~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
++....+..++.++++++ ++.+++||.++++... .....+...-.-+.|..+|+.+++...
T Consensus 478 ~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw--~~~~~~~~~~~p~~y~~~G~~~v~~~~ 539 (677)
T 1kb0_A 478 PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW--EAPTGTGVVAAPSTYMVDGRQYVSVAV 539 (677)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCcCcceEeCCCEEEEECCCCcEEEEECCCCceee--eeeCCCCcccCCEEEEeCCEEEEEEec
Confidence 666666677777777777 6679999999998653 112223223344567788876655543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0071 Score=61.43 Aligned_cols=144 Identities=10% Similarity=0.058 Sum_probs=95.6
Q ss_pred CeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 97 STIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
.+..++|++++..|+.+. .++.|.++|+..+.....+........++++++.++.++++-...+.|.++|+........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999776666555 5689999999766544444333356789999983455566666678999999875443322
Q ss_pred ecc-CCCeeEEEEcCCCcEEEEEc-C---CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 176 CDF-YRPIASIAFHAEGELLAVAS-G---HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 176 ~~h-~s~V~sVafSpdG~~LasgS-d---d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
... ......++++|++..|+.+. . +.|..+++...... ............+++++++..|+++..
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~---~~~~~~~~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR---ILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE---EEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE---EEEECCCCCCcEEEEcCCCCEEEEEEC
Confidence 322 25678999999766555544 2 45888888643321 111123345789999999887877664
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0043 Score=65.22 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCEEEEEECCC--eEEEEECCCCcEEEEecCCCCC-cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 98 TIAAAFSPDGRTLASTHGDH--TVKIIDCQTGNCLKVLSGHRRT-PWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DG--tVrIWDl~tgk~v~~L~gH~~~-VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
...+.|+ ++..+.+.+.+| .|+++|+.+++.+..+.-.... --++.+. ++++.+..-.++.+.+||..+.+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence 5788998 676666777666 8999999999988887643321 2335554 34555555568999999999999999
Q ss_pred EeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC---CCCeEEEEEccCCCeEEEEE
Q 036953 175 SCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT---RRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 175 t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h---~~sVtsVafSPdG~~LlaS~ 242 (792)
++.....-..++ ++++.|+.+. +++|+++|..+.+.... ...... -..++.+.|. +|+ +.+..
T Consensus 122 ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~-I~V~~~g~~~~~lNELe~~-~G~-lyan~ 188 (262)
T 3nol_A 122 SFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRT-ITVTAHGEELPELNELEWV-DGE-IFANV 188 (262)
T ss_dssp EEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEE-EECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred EEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEE-EEeccCCccccccceeEEE-CCE-EEEEE
Confidence 997554334444 5676666655 56699999998875541 111111 2445667886 564 55433
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0026 Score=65.50 Aligned_cols=131 Identities=12% Similarity=0.030 Sum_probs=87.1
Q ss_pred CcEEEEEeCCCeEEEEeccCCCc----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPL----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
+..+|.+..++.+..++.. ++. ..+...+.++...+++. ++.++.++.|..||.. ++.+..+......+.++.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence 5567777777777777766 321 12233455566666666 5556777888889988 777777765566677777
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcCCeEEEEEC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASGHKLYIWPY 207 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSdd~V~IWDl 207 (792)
+.+ ++.+++. + +.|..|| .+++.+..+. ....+.++...++|.+.+...++.|..+|.
T Consensus 184 ~d~-~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 184 IGK-DGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP 242 (330)
T ss_dssp ECT-TCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT
T ss_pred EcC-CCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC
Confidence 766 5555443 3 7788888 6777666654 335577778888877666665677888874
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=2.7e-05 Score=84.58 Aligned_cols=133 Identities=13% Similarity=0.083 Sum_probs=69.2
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCC--Cee
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR--PIA 183 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s--~V~ 183 (792)
++..+++++.|+.|+.||..+|+.++.+.. +.+.+..+.. ++.++++++.|+.|+.||..+++.++.+.... .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 678999999999999999999999999886 4555555555 66778888899999999999988776664221 010
Q ss_pred -EEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcccc
Q 036953 184 -SIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDS 249 (792)
Q Consensus 184 -sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs 249 (792)
+..+. ++..|++++ ++.|+.||.++++... ....+ . ...++|++..+++++.+..+..
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w---~~~~~-~---~~~~~p~~~~v~~~~~dg~v~a 144 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ---TLSSA-F---ADSLSPSTSLLYLGRTEYTITM 144 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEEC
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE---EecCC-C---cccccccCCEEEEEecCCEEEE
Confidence 01111 334555555 5569999999887543 11111 1 2345677777777665444443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00046 Score=77.33 Aligned_cols=107 Identities=17% Similarity=0.085 Sum_probs=84.8
Q ss_pred CCCCEEEEEECC-----CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe----------CCCeEEEEECCC
Q 036953 105 PDGRTLASTHGD-----HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS----------LDHEVRLWDANT 169 (792)
Q Consensus 105 PDG~~LaSGS~D-----GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS----------~DgtVrLWDl~t 169 (792)
++++++++.... +.|.++|+.+++.+..+..-..+ .+.++| |+++++.+. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 478888777653 69999999999999888744444 899999 777777665 467899999999
Q ss_pred CcEEEEeccC--------CCeeEEEEcCCCcEEEEEc---CCeEEEEECCCCCccc
Q 036953 170 SECIGSCDFY--------RPIASIAFHAEGELLAVAS---GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 170 g~~v~t~~h~--------s~V~sVafSpdG~~LasgS---dd~V~IWDlrt~~~~~ 214 (792)
++.+..+... .....+.|+|||++|+++. ++.|.++|+.+.+...
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~ 214 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDR 214 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEE
Confidence 9998887532 3456789999999999876 3459999999987543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0085 Score=62.69 Aligned_cols=143 Identities=10% Similarity=0.108 Sum_probs=89.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC-----CCCCcEEEEEccCCCCEEEEEeC-------------
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG-----HRRTPWVVRFHPLRSEILASGSL------------- 158 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g-----H~~~VtsVafSP~dg~lLaSgS~------------- 158 (792)
.+..+++.++...|+.+...+.|..+|..+++. ..+.. .......+++.+.+++++++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 578999998334566666566688888775542 22221 12356789998734566665432
Q ss_pred ----CCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEc
Q 036953 159 ----DHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFH 232 (792)
Q Consensus 159 ----DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafS 232 (792)
++.|..||..+++...........+.++|+++|++|+++. .++|++|++....... ......... ...+++.
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d 237 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRN 237 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEEC
T ss_pred ccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEEC
Confidence 3678889988776544333334567899999998776664 4679999987542211 111111223 6789999
Q ss_pred cCCCeEEEEE
Q 036953 233 PHAAPFVLTA 242 (792)
Q Consensus 233 PdG~~LlaS~ 242 (792)
++|+.+++..
T Consensus 238 ~~G~l~va~~ 247 (322)
T 2fp8_A 238 ADGHFWVSSS 247 (322)
T ss_dssp TTSCEEEEEE
T ss_pred CCCCEEEEec
Confidence 9998555443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0026 Score=67.02 Aligned_cols=138 Identities=8% Similarity=-0.012 Sum_probs=92.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
....+.|+ ++..+.+.+.+|.|+++|+.+++.+..+....-.--++.+. ++++....-.++.+.+||..+.+.+.++
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 35788887 45566677778899999999999877762111122346654 3566666667899999999999999999
Q ss_pred ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC---CCCeEEEEEccCCCeEEEEE
Q 036953 177 DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT---RRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 177 ~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h---~~sVtsVafSPdG~~LlaS~ 242 (792)
.....-..++ ++++.|+.+. +++|+++|..+.+.... ...... -..++.+.|. +|+ +.+..
T Consensus 133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~-I~V~~~g~~v~~lNeLe~~-dG~-lyanv 197 (268)
T 3nok_A 133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA-VQVKLRGQPVELINELECA-NGV-IYANI 197 (268)
T ss_dssp ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEE-EECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE-EEeCCCCcccccccccEEe-CCE-EEEEE
Confidence 7654445555 4677776665 56699999988875541 111112 2346778887 664 55433
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0036 Score=73.91 Aligned_cols=135 Identities=13% Similarity=0.149 Sum_probs=92.0
Q ss_pred CCC---EEEEEECCCeEEEEECCCCcEEEEecCCC-C--------------------------------------CcEEE
Q 036953 106 DGR---TLASTHGDHTVKIIDCQTGNCLKVLSGHR-R--------------------------------------TPWVV 143 (792)
Q Consensus 106 DG~---~LaSGS~DGtVrIWDl~tgk~v~~L~gH~-~--------------------------------------~VtsV 143 (792)
+|+ .++.++.+|.++++|..+|+.+....-.. . .-..+
T Consensus 315 ~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~ 394 (689)
T 1yiq_A 315 DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPM 394 (689)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCC
T ss_pred CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcc
Confidence 565 78899999999999999999875432110 0 01126
Q ss_pred EEccCCCCEEEEEeC---------------------------------------------CCeEEEEECCCCcEEEEecc
Q 036953 144 RFHPLRSEILASGSL---------------------------------------------DHEVRLWDANTSECIGSCDF 178 (792)
Q Consensus 144 afSP~dg~lLaSgS~---------------------------------------------DgtVrLWDl~tg~~v~t~~h 178 (792)
+|+| +..+++.... +++|+.||+.+++.++.+..
T Consensus 395 a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~ 473 (689)
T 1yiq_A 395 SYNP-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY 473 (689)
T ss_dssp EEET-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE
T ss_pred eECC-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC
Confidence 7888 6666665522 37899999999999999876
Q ss_pred CCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 179 YRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 179 ~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
..+...-.+...+.+++.++ ++.|+.||.++++... .........-.-+.|..+|+.+++...
T Consensus 474 ~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw--~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 474 VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW--EQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCccCccceECCCEEEEECCCCcEEEEECCCCccce--eeeCCCCcccCceEEEECCEEEEEEEe
Confidence 65555445666777888777 5669999999998653 111222222344677888886665443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0032 Score=74.93 Aligned_cols=185 Identities=13% Similarity=0.052 Sum_probs=104.1
Q ss_pred eeeeEEee-CCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-CcC-CCC-CCeEEEEEcCCCCEEEEEECC--
Q 036953 43 YVPKRQWV-DASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-PLV-PPP-RSTIAAAFSPDGRTLASTHGD-- 116 (792)
Q Consensus 43 ~V~s~aWs-pd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-~L~-gH~-~~V~sLafSPDG~~LaSGS~D-- 116 (792)
.+....|+ |++++++... +.+ +.+...|++++..++ ... ... .....++|+|||+.|+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~------~~~-----G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSV------DMS-----GNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEE------ESS-----SSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEE------eCC-----CCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCC
Confidence 34556777 7776654431 100 012235788887766 421 111 112368899999988887765
Q ss_pred ---CeEEEEECCCCcE--EEEec-CCCCCcEEEEEccCCCCEEEEEeC---CCeEEEEECCCC--cE--EEEec-cCCCe
Q 036953 117 ---HTVKIIDCQTGNC--LKVLS-GHRRTPWVVRFHPLRSEILASGSL---DHEVRLWDANTS--EC--IGSCD-FYRPI 182 (792)
Q Consensus 117 ---GtVrIWDl~tgk~--v~~L~-gH~~~VtsVafSP~dg~lLaSgS~---DgtVrLWDl~tg--~~--v~t~~-h~s~V 182 (792)
..|+++++.+++. ...+. ........+.|+| |+++|+..+. ...|.++|+.++ +. ..... .....
T Consensus 244 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 3688889887642 33333 2334567889999 8887776553 346888999875 33 22222 34455
Q ss_pred eEEEEcCCCcEEEEEcCC-----eEEEEECCCCCcccCCeEEecCCC--CeEEEEEccCCCeEEEEEe
Q 036953 183 ASIAFHAEGELLAVASGH-----KLYIWPYNNKEEASSPIIVLKTRR--SLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 183 ~sVafSpdG~~LasgSdd-----~V~IWDlrt~~~~~~~~~~~~h~~--sVtsVafSPdG~~LlaS~s 243 (792)
.++.|+..+.+++.+..+ +|..+|+.+..... . .+..+.. .+..+. ++++.|+++..
T Consensus 323 ~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~-~-~li~~~~~~~l~~~~--~~~~~lv~~~~ 386 (751)
T 2xe4_A 323 YDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWS-H-VLVDHSEDVFMESIA--VRSNYLVVAGR 386 (751)
T ss_dssp EEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCC-C-EEECCCSSEEEEEEE--ECSSEEEEEEE
T ss_pred EEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccce-e-eEECCCCCcEEEEEE--EECCEEEEEEE
Confidence 666665545555554432 48888876532111 1 0222333 344444 45666766654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.17 Score=52.57 Aligned_cols=177 Identities=13% Similarity=0.139 Sum_probs=99.6
Q ss_pred ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeE-EEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEECC-C-e
Q 036953 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESL-RHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGD-H-T 118 (792)
Q Consensus 42 k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sI-rvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS~D-G-t 118 (792)
.....++|++++++..+. .....++....++.+ ..|.. ...+..++++++|+.+++.... + .
T Consensus 32 ~~pegia~~~~g~lyv~d-------~~~~~I~~~d~~g~~~~~~~~--------~~~p~gia~~~dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTN-------HEVGEIVSITPDGNQQIHATV--------EGKVSGLAFTSNGDLVATGWNADSIP 96 (306)
T ss_dssp CCEEEEEECTTSCEEEEE-------TTTTEEEEECTTCCEEEEEEC--------SSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECCCCCEEEEe-------CCCCeEEEECCCCceEEEEeC--------CCCceeEEEcCCCcEEEEeccCCcce
Confidence 456678888887654332 123344444433332 23322 2358899999999966655433 2 4
Q ss_pred EEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEe----------ccCCCeeEEE
Q 036953 119 VKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC-IGSC----------DFYRPIASIA 186 (792)
Q Consensus 119 VrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-v~t~----------~h~s~V~sVa 186 (792)
|..+|..+++...... ........++..+ ++..+++-..++.|..+|..+++. +... ......+.+
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 6677877777543332 1223445666655 555555555688999999876532 2111 111234566
Q ss_pred EcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe
Q 036953 187 FHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP 237 (792)
Q Consensus 187 fSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~ 237 (792)
++++++|+++. .++|+.||+.............. ......++++++|+.
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l 225 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNL 225 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCE
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCE
Confidence 78888777665 45699999875221111111111 123456788888873
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0041 Score=73.43 Aligned_cols=144 Identities=15% Similarity=0.098 Sum_probs=93.3
Q ss_pred CCcEEEEEeCCCeEEEEeccCCCcC-----C-CCCCeEEEEEcC---CCCEEEEEE------CCCeEEEEECCCCcEEEE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCPLV-----P-PPRSTIAAAFSP---DGRTLASTH------GDHTVKIIDCQTGNCLKV 132 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~L~-----g-H~~~V~sLafSP---DG~~LaSGS------~DGtVrIWDl~tgk~v~~ 132 (792)
.+.+++....++.|..+|.+++++. . +......+..+| ++ .++.+. .++.|+.||..+|+.+..
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 3457778888899999998877432 1 111111112222 44 444443 378999999999999988
Q ss_pred ecCCC-------------------------------CCcEEEEEccCCCCEEEEEeCCCe-------------------E
Q 036953 133 LSGHR-------------------------------RTPWVVRFHPLRSEILASGSLDHE-------------------V 162 (792)
Q Consensus 133 L~gH~-------------------------------~~VtsVafSP~dg~lLaSgS~Dgt-------------------V 162 (792)
+..-. .....+.+.| +..+++.++.++. |
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 75210 0012578888 7788888887764 9
Q ss_pred EEEECCCCcEEEEeccC----------CCeeEEEEcCCCc---EEEEEc-CCeEEEEECCCCCcc
Q 036953 163 RLWDANTSECIGSCDFY----------RPIASIAFHAEGE---LLAVAS-GHKLYIWPYNNKEEA 213 (792)
Q Consensus 163 rLWDl~tg~~v~t~~h~----------s~V~sVafSpdG~---~LasgS-dd~V~IWDlrt~~~~ 213 (792)
..||.++|+.++.+... ....-.....+|+ .++.++ ++.|+++|.++++.+
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence 99999999999887421 1222222233564 677776 556999999998854
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0052 Score=72.41 Aligned_cols=145 Identities=12% Similarity=0.041 Sum_probs=93.8
Q ss_pred CCcEEEEEeCCCeEEEEeccCCCcC----CC-C-CCeEEEEEcC--CCCEEEEEEC------CCeEEEEECCCCcEEEEe
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCPLV----PP-P-RSTIAAAFSP--DGRTLASTHG------DHTVKIIDCQTGNCLKVL 133 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~L~----gH-~-~~V~sLafSP--DG~~LaSGS~------DGtVrIWDl~tgk~v~~L 133 (792)
.+.+++....++.|..+|..++++. .+ . .....+.-+| .+..++.++. ++.|+.||..+|+.+..+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 3567777788888999998877431 11 0 0000011111 2445555543 789999999999999888
Q ss_pred cCCCCC--------------------------------cEEEEEccCCCCEEEEEeCCC-------------------eE
Q 036953 134 SGHRRT--------------------------------PWVVRFHPLRSEILASGSLDH-------------------EV 162 (792)
Q Consensus 134 ~gH~~~--------------------------------VtsVafSP~dg~lLaSgS~Dg-------------------tV 162 (792)
...... ...++++| +..+++.++.++ .|
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 643211 12478888 677888777654 59
Q ss_pred EEEECCCCcEEEEeccC----------CCeeEEEEcCCC---cEEEEEc-CCeEEEEECCCCCcc
Q 036953 163 RLWDANTSECIGSCDFY----------RPIASIAFHAEG---ELLAVAS-GHKLYIWPYNNKEEA 213 (792)
Q Consensus 163 rLWDl~tg~~v~t~~h~----------s~V~sVafSpdG---~~LasgS-dd~V~IWDlrt~~~~ 213 (792)
..+|.++++.++.+... ....-+....+| +.++.++ ++.|+++|.++++.+
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI 350 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence 99999999999887421 112223334477 5677777 555999999998754
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.065 Score=63.48 Aligned_cols=171 Identities=8% Similarity=0.005 Sum_probs=114.9
Q ss_pred ecCCcEEEEEeCCCeEEEEeccCCCcC------------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEe
Q 036953 66 RDAKRGLVSWVEAESLRHLSAKYCPLV------------PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVL 133 (792)
Q Consensus 66 ~d~~~~L~S~s~d~sIrvWd~~t~~L~------------gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L 133 (792)
.+.+..+|.+..++-|..|+..++++. -....|.++...++++.|..|+.++-|.+||..+++.....
T Consensus 364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~ 443 (795)
T 4a2l_A 364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN 443 (795)
T ss_dssp ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC
T ss_pred ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee
Confidence 355677899888877888887655321 01356999999888886777787777999998887644332
Q ss_pred c----CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-------cCCCeeEEEEcCCCcEEEEEcCCeE
Q 036953 134 S----GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-------FYRPIASIAFHAEGELLAVASGHKL 202 (792)
Q Consensus 134 ~----gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-------h~s~V~sVafSpdG~~LasgSdd~V 202 (792)
. .....|.++...+ ++.+.+.. . +.+.+||..+++...... ....|.++..+++|.+.+... ++|
T Consensus 444 ~~~~~l~~~~v~~i~~d~-~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl 519 (795)
T 4a2l_A 444 QRNSQLVNENVYAILPDG-EGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGL 519 (795)
T ss_dssp TTTSCCSCSCEEEEEECS-SSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCE
T ss_pred cCCCCcCCCeeEEEEECC-CCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cce
Confidence 2 1345788998887 66655544 4 458999998876543321 135689999999998777665 669
Q ss_pred EEEECCCCCcccCC---eEEecCCCCeEEEEEccCCCeEEEE
Q 036953 203 YIWPYNNKEEASSP---IIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 203 ~IWDlrt~~~~~~~---~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
..||..+.+. ... ....-....|.++...++|...+.+
T Consensus 520 ~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 520 SVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT 560 (795)
T ss_dssp EEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence 9999866542 100 0000124578999999988855544
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.097 Score=62.01 Aligned_cols=172 Identities=9% Similarity=0.010 Sum_probs=115.0
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCCcC---------C-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC-
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCPLV---------P-PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG- 135 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~L~---------g-H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g- 135 (792)
|.+..+|.+..++-|..++.....+. + ....|.++...++|+.. .|+.++-|..||..+++.......
T Consensus 318 D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~ 396 (795)
T 4a2l_A 318 DSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQE 396 (795)
T ss_dssp CTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC-
T ss_pred eCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCC
Confidence 45677888888777888876544321 0 23459999999888744 577776799999887764433211
Q ss_pred -------CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----cCCCeeEEEEcCCCcEEEEEcCCeEE
Q 036953 136 -------HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-----FYRPIASIAFHAEGELLAVASGHKLY 203 (792)
Q Consensus 136 -------H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-----h~s~V~sVafSpdG~~LasgSdd~V~ 203 (792)
....|.++...+ ++++|..|+.++-|.+||..+++...... ....|.++...++|.+.+... ++|.
T Consensus 397 ~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~ 474 (795)
T 4a2l_A 397 DESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALV 474 (795)
T ss_dssp -----CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEE
T ss_pred CCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Ccee
Confidence 235788998887 67746667777889999998876544321 245789999988888766655 5699
Q ss_pred EEECCCCCcccCCeE---EecCCCCeEEEEEccCCCeEEEE
Q 036953 204 IWPYNNKEEASSPII---VLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 204 IWDlrt~~~~~~~~~---~~~h~~sVtsVafSPdG~~LlaS 241 (792)
+||..+.+....... ..-....|.++...++|...+.+
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 515 (795)
T 4a2l_A 475 RFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG 515 (795)
T ss_dssp EEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred EEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe
Confidence 999876543210000 00123578899998888855443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.09 Score=54.59 Aligned_cols=136 Identities=14% Similarity=0.089 Sum_probs=89.3
Q ss_pred CeEEEEEcCCCCEEEEEECC--CeEEEEECCCCcEEEEecCCCC-CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 97 STIAAAFSPDGRTLASTHGD--HTVKIIDCQTGNCLKVLSGHRR-TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~D--GtVrIWDl~tgk~v~~L~gH~~-~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
-+..+.|+. +..+.+.+.+ ..|+++|+.+++.+..+.-... .--++.+. ++++....-.++.+.+||..+.+.+
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEE
Confidence 467899985 5555555554 4899999999998888763322 22345554 3555566667899999999999999
Q ss_pred EEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC---CCCeEEEEEccCCCeEEE
Q 036953 174 GSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT---RRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 174 ~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h---~~sVtsVafSPdG~~Lla 240 (792)
.++.....-..++ ++++.|+.+. +++|+++|..+.+.... .....+ -..++.+.|. +|+ +.+
T Consensus 99 ~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~-I~V~~~g~~~~~lNeLe~~-~G~-lya 164 (243)
T 3mbr_X 99 ARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGS-IKVTAGGRPLDNLNELEWV-NGE-LLA 164 (243)
T ss_dssp EEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEE-EECEETTEECCCEEEEEEE-TTE-EEE
T ss_pred EEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEE-EEEccCCcccccceeeEEe-CCE-EEE
Confidence 9997655445565 4566555554 56699999998875441 111111 2356677776 554 443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.19 Score=52.31 Aligned_cols=148 Identities=8% Similarity=0.102 Sum_probs=97.4
Q ss_pred cCCCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCcEEEEecC-CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLA-STHGDHTVKIIDCQTGNCLKVLSG-HRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~La-SGS~DGtVrIWDl~tgk~v~~L~g-H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.++.+.- -....-+|++.+ ++.++++.-.++.+.++++.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEEC
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcC
Confidence 445556799999999766555 57778899999987 887777642 224578899988 77777776677889999876
Q ss_pred CCcE---EEEec-------cCCCeeEEEEcCCCcEEEEEcCC---eEEEEECC-CCCcccCCeEEe-------cCCCCeE
Q 036953 169 TSEC---IGSCD-------FYRPIASIAFHAEGELLAVASGH---KLYIWPYN-NKEEASSPIIVL-------KTRRSLR 227 (792)
Q Consensus 169 tg~~---v~t~~-------h~s~V~sVafSpdG~~LasgSdd---~V~IWDlr-t~~~~~~~~~~~-------~h~~sVt 227 (792)
.... +.... .+..+..++|+|+++.|+++... .|+.|+-. .... ..... .....+.
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~---l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE---LHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC---CEEEECHHHHHTCCSSCCC
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc---eeeecchhhccccccCCce
Confidence 5432 22221 23456899999999877777632 25555510 1111 11111 1234578
Q ss_pred EEEEccCCCeEEEEEe
Q 036953 228 AVHFHPHAAPFVLTAE 243 (792)
Q Consensus 228 sVafSPdG~~LlaS~s 243 (792)
+++++|....+++.+.
T Consensus 177 ~l~~dp~tg~lliLS~ 192 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSH 192 (255)
T ss_dssp EEEEETTTTEEEEEET
T ss_pred eEEEcCCCCeEEEEEC
Confidence 9999998777766654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.05 Score=56.80 Aligned_cols=141 Identities=7% Similarity=0.057 Sum_probs=91.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC--------------------CCCCcEEEEEccCCCCEEEEE
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG--------------------HRRTPWVVRFHPLRSEILASG 156 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g--------------------H~~~VtsVafSP~dg~lLaSg 156 (792)
...+++|+++++.++++..++.|..||..+++.. .+.. ....+.++++.+ +...|+.+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEE
Confidence 3567889999987888888999999998765432 2221 113578899986 33445555
Q ss_pred eCCCeEEEEECCCCcEEEEec-----cCCCeeEEEEcC-CCcEEEEEcC------------------CeEEEEECCCCCc
Q 036953 157 SLDHEVRLWDANTSECIGSCD-----FYRPIASIAFHA-EGELLAVASG------------------HKLYIWPYNNKEE 212 (792)
Q Consensus 157 S~DgtVrLWDl~tg~~v~t~~-----h~s~V~sVafSp-dG~~LasgSd------------------d~V~IWDlrt~~~ 212 (792)
...+.|..+|..+++...... .....+.+++.+ +|++.++... +.|..||..+++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 555668889987654322111 123578899999 9987776532 3488998866542
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 213 ASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 213 ~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.. ........+.++|+|+|+.++++..
T Consensus 178 ~~----~~~~~~~p~gia~~~dg~~lyv~d~ 204 (322)
T 2fp8_A 178 TL----LLKELHVPGGAEVSADSSFVLVAEF 204 (322)
T ss_dssp EE----EEEEESCCCEEEECTTSSEEEEEEG
T ss_pred EE----eccCCccCcceEECCCCCEEEEEeC
Confidence 21 1111233467899999997766643
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.045 Score=55.40 Aligned_cols=155 Identities=8% Similarity=-0.005 Sum_probs=93.4
Q ss_pred CCCeEEEEeccCCC---cC-CCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCC
Q 036953 77 EAESLRHLSAKYCP---LV-PPPRSTIAAAFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLR 149 (792)
Q Consensus 77 ~d~sIrvWd~~t~~---L~-gH~~~V~sLafSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~d 149 (792)
..+.|.+++..... +. ........++++|++..|+.+.. .+.|..++++................++++++++
T Consensus 99 ~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~ 178 (267)
T 1npe_A 99 QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFS 178 (267)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTT
T ss_pred CCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCC
Confidence 34566666654321 11 11245789999997776666654 3688888876433222222333567899999933
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecC-CCCe
Q 036953 150 SEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKT-RRSL 226 (792)
Q Consensus 150 g~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h-~~sV 226 (792)
+.++++-...+.|..+|+........+........++.. +..|+++. ++.|.++|..+++... ..... ....
T Consensus 179 ~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~---~i~~g~~~~p 253 (267)
T 1npe_A 179 SQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMD---TFHPHKQTRL 253 (267)
T ss_dssp TEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEE---EECCSSCCCC
T ss_pred CEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceE---EEcccccccc
Confidence 445566667789999999765443333333445667654 44555544 4669999998876432 22222 2246
Q ss_pred EEEEEccCCC
Q 036953 227 RAVHFHPHAA 236 (792)
Q Consensus 227 tsVafSPdG~ 236 (792)
..+++.|++.
T Consensus 254 ~gi~~~~~~~ 263 (267)
T 1npe_A 254 YGITIALSQC 263 (267)
T ss_dssp CCEEEECSCC
T ss_pred ceeeecCccC
Confidence 6788888765
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0044 Score=73.71 Aligned_cols=143 Identities=13% Similarity=0.060 Sum_probs=90.4
Q ss_pred CCCC-CeEEEEEc-CCCCEEEEEEC-CC----eEEEEECCCC-cEEE-EecCCCCCcEEEEEccCCCCEEEEEeCC----
Q 036953 93 PPPR-STIAAAFS-PDGRTLASTHG-DH----TVKIIDCQTG-NCLK-VLSGHRRTPWVVRFHPLRSEILASGSLD---- 159 (792)
Q Consensus 93 gH~~-~V~sLafS-PDG~~LaSGS~-DG----tVrIWDl~tg-k~v~-~L~gH~~~VtsVafSP~dg~lLaSgS~D---- 159 (792)
+|.- .+...+|| |||++|+.+.. +| +|+++|+.++ +.+. .+. .....+.|+| |++.|+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLR 245 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCC
Confidence 3443 57889999 99998886543 22 5999999988 6321 111 1134688999 77777766655
Q ss_pred -CeEEEEECCCCcE--EEEe--ccCCCeeEEEEcCCCcEEEEEc-C--C-eEEEEECCCCCcccCC--eEEec-CCCCeE
Q 036953 160 -HEVRLWDANTSEC--IGSC--DFYRPIASIAFHAEGELLAVAS-G--H-KLYIWPYNNKEEASSP--IIVLK-TRRSLR 227 (792)
Q Consensus 160 -gtVrLWDl~tg~~--v~t~--~h~s~V~sVafSpdG~~LasgS-d--d-~V~IWDlrt~~~~~~~--~~~~~-h~~sVt 227 (792)
..|.++++.+++. ...+ ........+.|+|||++|+..+ . . .|+++|+.++... . ..+.. ......
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~--~~~~~l~~~~~~~~~ 323 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH--NTLEIVRPREKGVRY 323 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC--CCEEESSCCCTTCCE
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC--ceeEEeecCCCCceE
Confidence 3688889987642 2333 2334567889999999888765 2 2 3999999875311 1 12222 334556
Q ss_pred EEEEccCCCeEEEEE
Q 036953 228 AVHFHPHAAPFVLTA 242 (792)
Q Consensus 228 sVafSPdG~~LlaS~ 242 (792)
++.|+. |+.|+..+
T Consensus 324 s~~~~~-g~~l~~~t 337 (751)
T 2xe4_A 324 DVQMHG-TSHLVILT 337 (751)
T ss_dssp EEEEET-TTEEEEEE
T ss_pred EEeeee-CCEEEEEe
Confidence 666654 55555554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.11 Score=54.76 Aligned_cols=162 Identities=11% Similarity=0.055 Sum_probs=101.2
Q ss_pred CeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC----CcEEEEecCCCCCcEEEEEccCCC
Q 036953 79 ESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQT----GNCLKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 79 ~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~t----gk~v~~L~gH~~~VtsVafSP~dg 150 (792)
..|+..+..... +......+..++|++++..|+.+. .++.|..+++.. ......+...-....++++.+.++
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 345566555432 222345678999998766665554 568999999876 222333333334568899986355
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-C--CeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 151 EILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS-G--HKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 151 ~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-d--d~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
+++++-..++.|.+.|+........+. .......++++|.+..|+.+. + ++|..+++...... ......-..-
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~---~~~~~~~~~P 166 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLVTENIQWP 166 (316)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE---EEECSSCSCE
T ss_pred eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE---EEEECCCCCc
Confidence 666666778899999987654433332 345678999998666555544 2 46888888644321 1112234567
Q ss_pred EEEEEccCCCeEEEEEe
Q 036953 227 RAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s 243 (792)
+.++|++++..|+.+..
T Consensus 167 ~gla~d~~~~~lY~~D~ 183 (316)
T 1ijq_A 167 NGITLDLLSGRLYWVDS 183 (316)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred eEEEEeccCCEEEEEEC
Confidence 89999998887877653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.053 Score=59.13 Aligned_cols=165 Identities=9% Similarity=-0.003 Sum_probs=108.4
Q ss_pred eCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC
Q 036953 76 VEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE 151 (792)
Q Consensus 76 s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~ 151 (792)
.....|+.++..... +......+..++|++....|+.. ...+.|..+++..+.....+........++++.+.++.
T Consensus 93 ~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ 172 (386)
T 3v65_B 93 ANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK 172 (386)
T ss_dssp ECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTE
T ss_pred ecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCe
Confidence 344567777765442 22234558899999866655554 45788999998876654444433345678899874566
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc--C-CeEEEEECCCCCcccCCeEEecCCCCeE
Q 036953 152 ILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS--G-HKLYIWPYNNKEEASSPIIVLKTRRSLR 227 (792)
Q Consensus 152 lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS--d-d~V~IWDlrt~~~~~~~~~~~~h~~sVt 227 (792)
++++-...+.|.+.++........+. .......++++|.+..|+.+. . ++|+.+++...... ......-..-+
T Consensus 173 lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~~~~~~~~~Pn 249 (386)
T 3v65_B 173 LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR---IIADTHLFWPN 249 (386)
T ss_dssp EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEECSSCSCEE
T ss_pred EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE---EEEECCCCCee
Confidence 66776777889999987654333332 335678999998777666554 3 45888888654421 12223344578
Q ss_pred EEEEccCCCeEEEEEe
Q 036953 228 AVHFHPHAAPFVLTAE 243 (792)
Q Consensus 228 sVafSPdG~~LlaS~s 243 (792)
.++|+|++..|+.+-.
T Consensus 250 Glavd~~~~~lY~aD~ 265 (386)
T 3v65_B 250 GLTIDYAGRRMYWVDA 265 (386)
T ss_dssp EEEEEGGGTEEEEEET
T ss_pred eEEEeCCCCEEEEEEC
Confidence 9999998887877653
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0099 Score=61.09 Aligned_cols=158 Identities=11% Similarity=-0.028 Sum_probs=101.9
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCCc----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEE
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCPL----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWV 142 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~L----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vts 142 (792)
+.+..+|.+..++.|..++.. +.+ ......+.++.+.+++..++. + +.|..|| .+++....+......+.+
T Consensus 145 ~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~ 219 (330)
T 3hxj_A 145 SEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTR 219 (330)
T ss_dssp CTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSC
T ss_pred cCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceec
Confidence 446668888777888888876 421 223345667777777775554 4 7799999 778877777766677888
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecc-CCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEec
Q 036953 143 VRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF-YRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLK 221 (792)
Q Consensus 143 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h-~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~ 221 (792)
+...+ ++. +..++.++.+..+|. +++.+..+.. ...+..+...+++.+.+...++.|..+|. +++... ....
T Consensus 220 ~~~~~-~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~---~~~~ 292 (330)
T 3hxj_A 220 PAISE-DGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKW---NFET 292 (330)
T ss_dssp CEECT-TSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEE---EEEC
T ss_pred eEECC-CCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEE---EEEc
Confidence 88887 554 555677888988884 5666666543 23344566666776655555667999995 444221 1222
Q ss_pred CCCCeEEEEEccCCC
Q 036953 222 TRRSLRAVHFHPHAA 236 (792)
Q Consensus 222 h~~sVtsVafSPdG~ 236 (792)
....+.++...++|.
T Consensus 293 ~~~~~~~~~~d~~g~ 307 (330)
T 3hxj_A 293 GSWIIATPVIDENGT 307 (330)
T ss_dssp SSCCCSCCEECTTCC
T ss_pred CCccccceEEcCCCE
Confidence 334455666666666
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0056 Score=65.10 Aligned_cols=103 Identities=6% Similarity=-0.017 Sum_probs=72.3
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCe---
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPI--- 182 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V--- 182 (792)
++..++.++.++.|..+|..+++.+..+............. +..++.++.++.|..+|..+++.++.+.....+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence 56788889999999999999999988877544332223332 357778889999999999999998887544332
Q ss_pred ---eEEEEcCCCcEEEEEc-CCeEEEEECCCCCcc
Q 036953 183 ---ASIAFHAEGELLAVAS-GHKLYIWPYNNKEEA 213 (792)
Q Consensus 183 ---~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~ 213 (792)
...... ++ .++++. ++.|..+|.++++..
T Consensus 179 ~~~~~~~~~-~~-~v~~g~~~g~l~~~d~~tG~~~ 211 (376)
T 3q7m_A 179 RGESAPTTA-FG-AAVVGGDNGRVSAVLMEQGQMI 211 (376)
T ss_dssp CCCCCCEEE-TT-EEEECCTTTEEEEEETTTCCEE
T ss_pred cCCCCcEEE-CC-EEEEEcCCCEEEEEECCCCcEE
Confidence 122222 34 455555 667999999888743
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0068 Score=64.43 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=87.3
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCC--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC-CCCCcEEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVP--PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG-HRRTPWVVRF 145 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~g--H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g-H~~~VtsVaf 145 (792)
+..++.+..++.+..++..++++.- .......+.. ++..++.++.++.|..+|..+++.+..... ....+.....
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 316 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL 316 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE
Confidence 4567777777888888887664321 1223444444 467888889999999999999998887762 2223333343
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEecc-CCCeeEEEEcCCCcEEEEEcCCeEEEEE
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSCDF-YRPIASIAFHAEGELLAVASGHKLYIWP 206 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h-~s~V~sVafSpdG~~LasgSdd~V~IWD 206 (792)
. +..|+.++.++.|.++|..+++.+..+.. ...+.......++.+++.+.++.|+.||
T Consensus 317 ~---~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 317 Y---NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp E---TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred E---CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 3 36788888999999999999998887754 3333221111244444444466688887
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.1 Score=56.00 Aligned_cols=164 Identities=9% Similarity=0.002 Sum_probs=106.0
Q ss_pred CCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCE
Q 036953 77 EAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEI 152 (792)
Q Consensus 77 ~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~l 152 (792)
....|+..+..... +......+..++|++....|+... ..+.|..+++..+.....+........++++.+.++.+
T Consensus 51 ~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 130 (349)
T 3v64_C 51 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 130 (349)
T ss_dssp CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence 34446666654332 122234578999998666665554 57889999988766444444333456789998745666
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc--C-CeEEEEECCCCCcccCCeEEecCCCCeEE
Q 036953 153 LASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS--G-HKLYIWPYNNKEEASSPIIVLKTRRSLRA 228 (792)
Q Consensus 153 LaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS--d-d~V~IWDlrt~~~~~~~~~~~~h~~sVts 228 (792)
+++-...+.|.+.++........+ ........++++|.+..|+.+. . ++|+.+++....... .....-..-+.
T Consensus 131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~~~~~~PnG 207 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IADTHLFWPNG 207 (349)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---SCCSSCSCEEE
T ss_pred EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE---EEECCCCCcce
Confidence 677777889999998765433333 2335678999999766655554 3 559999886543211 11123345689
Q ss_pred EEEccCCCeEEEEEe
Q 036953 229 VHFHPHAAPFVLTAE 243 (792)
Q Consensus 229 VafSPdG~~LlaS~s 243 (792)
++|+|++..|..+-.
T Consensus 208 la~d~~~~~lY~aD~ 222 (349)
T 3v64_C 208 LTIDYAGRRMYWVDA 222 (349)
T ss_dssp EEEETTTTEEEEEET
T ss_pred EEEeCCCCEEEEEEC
Confidence 999998887877653
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.35 Score=57.03 Aligned_cols=167 Identities=11% Similarity=0.034 Sum_probs=111.1
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCCcC-------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec--CCC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCPLV-------PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS--GHR 137 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~L~-------gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~--gH~ 137 (792)
+.+..+|.+..++-|..++..+..+. .....|.++...+++...+ |+.++-+..+|..+++...... ...
T Consensus 371 d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~ 449 (781)
T 3v9f_A 371 DGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNEL 449 (781)
T ss_dssp CTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCC
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCC
Confidence 45577888887777888877654221 1235689999888777554 6766678899987775433221 134
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-c-----CCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCC
Q 036953 138 RTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-F-----YRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 138 ~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h-----~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~ 211 (792)
..|.++...+ ++.+.+ ++. +-|..||..+++...... . ...|.++...++|.+.+...+++|..||.++.+
T Consensus 450 ~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE
T ss_pred CeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe
Confidence 6788888876 555444 455 569999988766543322 1 357899999999987776655669999986654
Q ss_pred cccCCeEEe-c---CCCCeEEEEEccCCCeEEEE
Q 036953 212 EASSPIIVL-K---TRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 212 ~~~~~~~~~-~---h~~sVtsVafSPdG~~LlaS 241 (792)
... .. . ....|.++...++|...+.+
T Consensus 527 ~~~----~~~~~~l~~~~i~~i~~d~~g~lWi~T 556 (781)
T 3v9f_A 527 VRK----FNQYEGFCSNTINQIYRSSKGQMWLAT 556 (781)
T ss_dssp EEE----ECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred EEE----ccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence 211 11 1 24578999999999855554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0029 Score=69.38 Aligned_cols=89 Identities=13% Similarity=-0.045 Sum_probs=72.2
Q ss_pred eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe----------CCCeEEEEECCCCcEEEEeccC--------
Q 036953 118 TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS----------LDHEVRLWDANTSECIGSCDFY-------- 179 (792)
Q Consensus 118 tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS----------~DgtVrLWDl~tg~~v~t~~h~-------- 179 (792)
+|.++|..+++.+..+..-..+ .+.++| |+++++.+. .+++|.+||+.+++.+.++...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 8889999999999988744445 799999 777777775 4789999999999999988532
Q ss_pred CCeeEEEEcCCCcEEEEEc---CCeEEE--EECCC
Q 036953 180 RPIASIAFHAEGELLAVAS---GHKLYI--WPYNN 209 (792)
Q Consensus 180 s~V~sVafSpdG~~LasgS---dd~V~I--WDlrt 209 (792)
.....+.++|||++|+++. ++.|.+ +|..+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 3456899999999999886 244888 99866
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.68 E-value=0.2 Score=54.95 Aligned_cols=167 Identities=10% Similarity=0.042 Sum_probs=110.1
Q ss_pred EEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCC----cEEEEecCCCCCcEEEE
Q 036953 73 VSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTG----NCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 73 ~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tg----k~v~~L~gH~~~VtsVa 144 (792)
+.......|+..+..... +......+..++|++....|+... ..+.|+.+++... .....+........+++
T Consensus 86 ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla 165 (400)
T 3p5b_L 86 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 165 (400)
T ss_dssp EEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEE
T ss_pred eEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEE
Confidence 333445678887776442 334456789999999666665554 5688999998752 23334443445678899
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc---CCeEEEEECCCCCcccCCeEEe
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS---GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS---dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
+.+.+++++++-...+.|.+.|+........+. .......|+++|.+.+|+.+. .++|+..++...... ....
T Consensus 166 vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~---~~~~ 242 (400)
T 3p5b_L 166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLVT 242 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE---EEEC
T ss_pred EEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE---EEEE
Confidence 987456666776778899999998765544443 445678999999766666554 245999998655422 1222
Q ss_pred cCCCCeEEEEEccCCCeEEEEE
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~ 242 (792)
..-..-+.+++++++..|+.+-
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD 264 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVD 264 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEEEeCCCEEEEEE
Confidence 2335678999999888787764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.046 Score=64.21 Aligned_cols=136 Identities=11% Similarity=0.167 Sum_probs=85.2
Q ss_pred CCCC---EEEEEECCCeEEEEECCCCcEEEEecCCC------------CCc------------------------EEEEE
Q 036953 105 PDGR---TLASTHGDHTVKIIDCQTGNCLKVLSGHR------------RTP------------------------WVVRF 145 (792)
Q Consensus 105 PDG~---~LaSGS~DGtVrIWDl~tgk~v~~L~gH~------------~~V------------------------tsVaf 145 (792)
.+|+ .++.++.+|.++++|..+|+.+..++... .++ ..+++
T Consensus 309 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~ 388 (668)
T 1kv9_A 309 IDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSF 388 (668)
T ss_dssp ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEE
T ss_pred cCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceE
Confidence 3665 68889999999999999999875443211 000 12577
Q ss_pred ccCCCCEEEEE------------------------------------eCCCeEEEEECCCCcEEEEeccCCCeeEEEEcC
Q 036953 146 HPLRSEILASG------------------------------------SLDHEVRLWDANTSECIGSCDFYRPIASIAFHA 189 (792)
Q Consensus 146 SP~dg~lLaSg------------------------------------S~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSp 189 (792)
+| +..+++.. ..++.|..||+.+++.++.+..........+..
T Consensus 389 dp-~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t 467 (668)
T 1kv9_A 389 NP-GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLST 467 (668)
T ss_dssp ET-TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE
T ss_pred CC-CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEe
Confidence 77 44444431 124789999999999998886555554444555
Q ss_pred CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 190 EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 190 dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.+.++++++ ++.|+.||.++++... .........-.-+.+..+|+.+++.+.
T Consensus 468 ~gg~vf~g~~dg~l~a~d~~tG~~l~--~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 468 AGNLVFQGTAAGQMHAYSADKGEALW--QFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCcccchhhhhhcChhhe--EecCCCCcccCceEEEECCEEEEEEEe
Confidence 677777777 5669999999988543 111111111123445567775555443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.03 Score=65.18 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCEEEEEECCC--------------------------------------eEEEEECCC--CcE-EEEecCC
Q 036953 98 TIAAAFSPDGRTLASTHGDH--------------------------------------TVKIIDCQT--GNC-LKVLSGH 136 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DG--------------------------------------tVrIWDl~t--gk~-v~~L~gH 136 (792)
...++++|||+++++.+.+. .|.|.|..+ ++. +..+..
T Consensus 197 pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv- 275 (595)
T 1fwx_A 197 LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI- 275 (595)
T ss_dssp CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-
T ss_pred ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-
Confidence 34577999999999888543 366777766 444 444432
Q ss_pred CCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCc------------EEEEeccCCCeeEEEEcCCCcEEEEEc--CCe
Q 036953 137 RRTPWVVRFHPLRSEILASGS-LDHEVRLWDANTSE------------CIGSCDFYRPIASIAFHAEGELLAVAS--GHK 201 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS-~DgtVrLWDl~tg~------------~v~t~~h~s~V~sVafSpdG~~LasgS--dd~ 201 (792)
.....++.++| |+++++.++ .+.+|.++|+.+.+ .+...........++|+++| .+++.. ++.
T Consensus 276 g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsq 353 (595)
T 1fwx_A 276 ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQ 353 (595)
T ss_dssp ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTE
T ss_pred CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCc
Confidence 23456799999 888766655 68899999998653 45556667788999999999 666655 677
Q ss_pred EEEEECCCCC------cccCCe-EEecCCCC--e---EEEEEccCCCeEEEEEee
Q 036953 202 LYIWPYNNKE------EASSPI-IVLKTRRS--L---RAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 202 V~IWDlrt~~------~~~~~~-~~~~h~~s--V---tsVafSPdG~~LlaS~s~ 244 (792)
|.+||+.... ...... ....|-.+ . ..+.++|||++|+++++.
T Consensus 354 V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 354 VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred EEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 9999997621 111011 11112111 1 123457999988888763
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.82 Score=53.88 Aligned_cols=169 Identities=4% Similarity=-0.040 Sum_probs=109.8
Q ss_pred ecCCcEEEEEeCCCeEEEEeccCCCcC-------------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 036953 66 RDAKRGLVSWVEAESLRHLSAKYCPLV-------------PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV 132 (792)
Q Consensus 66 ~d~~~~L~S~s~d~sIrvWd~~t~~L~-------------gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~ 132 (792)
.|....+|.+..++-|..++.....+. -....|.++...++|+.. .|+.++-|.+||..+++....
T Consensus 320 ~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 320 QDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp ECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC
T ss_pred EeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEc
Confidence 466778999887777888877644321 023469999998887644 556555588899765432211
Q ss_pred e---cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---cCCCeeEEEEcCCCcEEEEEcCCeEEEEE
Q 036953 133 L---SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD---FYRPIASIAFHAEGELLAVASGHKLYIWP 206 (792)
Q Consensus 133 L---~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~---h~s~V~sVafSpdG~~LasgSdd~V~IWD 206 (792)
. ......|.++...+ ++.+.+ |+.++-+..+|..+++...... ....|.++...++|.+.+... ++|.+||
T Consensus 399 ~~~~~~~~~~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~ 475 (781)
T 3v9f_A 399 KENRELLSNSVLCSLKDS-EGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVID 475 (781)
T ss_dssp -----CCCSBEEEEEECT-TSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEE
T ss_pred cCCCCCCCcceEEEEECC-CCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEe
Confidence 1 12345688888876 555544 6777789999988776443321 246788999888887666554 6799999
Q ss_pred CCCCCcccCCeEEecC-----CCCeEEEEEccCCCeEEEE
Q 036953 207 YNNKEEASSPIIVLKT-----RRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 207 lrt~~~~~~~~~~~~h-----~~sVtsVafSPdG~~LlaS 241 (792)
..+.+... ..... ...|.++...++|...+.+
T Consensus 476 ~~~~~~~~---~~~~~~~~~~~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 476 LASKKVIH---HYDTSNSQLLENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp SSSSSCCE---EECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred CCCCeEEe---cccCcccccccceeEEEEEcCCCCEEEEE
Confidence 87765321 11111 3578899998888855544
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.051 Score=60.33 Aligned_cols=142 Identities=11% Similarity=0.163 Sum_probs=88.9
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CC----eEEEEECCCC
Q 036953 97 STIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DH----EVRLWDANTS 170 (792)
Q Consensus 97 ~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-Dg----tVrLWDl~tg 170 (792)
....++++| ++..|+.+...+.|+.+|+.+++..... ........++|++ ++++|+.+.. ++ .+...+. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 467899998 4666777666588999999876644433 3455688999999 7775554443 22 2333443 33
Q ss_pred cEE--EEeccCCCeeEEEEcC-CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 171 ECI--GSCDFYRPIASIAFHA-EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 171 ~~v--~t~~h~s~V~sVafSp-dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
... ..+........++++| +|.++++-. .++|+.||........ .........-+.++|+|+|++|+++..
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 221 2232334567788999 666555544 5679999987654211 111222345678999999997776654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.077 Score=61.15 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=86.0
Q ss_pred CCCC---EEEEEECCCeEEEEECCCCcEEEEecCCC-------------CCc--------------------------EE
Q 036953 105 PDGR---TLASTHGDHTVKIIDCQTGNCLKVLSGHR-------------RTP--------------------------WV 142 (792)
Q Consensus 105 PDG~---~LaSGS~DGtVrIWDl~tgk~v~~L~gH~-------------~~V--------------------------ts 142 (792)
.+|+ .++.++.+|.++++|..+|+.+..+.-.. .++ ..
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 4674 56788899999999999999887764221 111 23
Q ss_pred EEEccCCCCEEEEEe-------------------------------------CCCeEEEEECCCCcEEEEeccCCCeeEE
Q 036953 143 VRFHPLRSEILASGS-------------------------------------LDHEVRLWDANTSECIGSCDFYRPIASI 185 (792)
Q Consensus 143 VafSP~dg~lLaSgS-------------------------------------~DgtVrLWDl~tg~~v~t~~h~s~V~sV 185 (792)
++++| +..+++... .++.|..||+.+++.++.+.....+...
T Consensus 391 ~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~ 469 (571)
T 2ad6_A 391 DSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGG 469 (571)
T ss_dssp CEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSB
T ss_pred ceECC-CCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccce
Confidence 57777 555555443 3578999999999999888655444433
Q ss_pred EEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 186 AFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 186 afSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.+...+.++++++ ++.|+.||.++++... .........-..+.+..+|+.++.+..
T Consensus 470 ~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw--~~~~~~~~~~~p~~~~~~G~~yv~~~~ 526 (571)
T 2ad6_A 470 TLYTKGGLVWYATLDGYLKALDNKDGKELW--NFKMPSGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eEEECCCEEEEEcCCCeEEEEECCCCCEEE--EEeCCCCcEeeeEEEEECCEEEEEEEC
Confidence 3333455556666 6679999999988653 111111111122346678875555443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.081 Score=58.66 Aligned_cols=139 Identities=14% Similarity=0.075 Sum_probs=90.3
Q ss_pred CcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEECC-C----eEEEEECCCCcEE--EEecCCCC
Q 036953 69 KRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTHGD-H----TVKIIDCQTGNCL--KVLSGHRR 138 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS~D-G----tVrIWDl~tgk~v--~~L~gH~~ 138 (792)
+..|+.....+.|+.++...+. +.........++|++++++|+.+... + .+.+++. .+... ..+. ...
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~ 226 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQ 226 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECS
T ss_pred CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCC
Confidence 4566666655778888876542 22344568899999999977776642 1 3433443 23211 2232 123
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--ccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCC
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC--DFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNN 209 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~--~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt 209 (792)
...+++++|.++.++++-..++.|..+|..++...... ........++|+|+|++|+++. .+.|+.++...
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 45678999966677777667889999999876543322 2334578999999999666664 55699988754
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.53 Score=50.41 Aligned_cols=161 Identities=10% Similarity=0.036 Sum_probs=96.9
Q ss_pred eCCCeEEEEeccCCC---c-CCCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCC
Q 036953 76 VEAESLRHLSAKYCP---L-VPPPRSTIAAAFSPDGRTLA-STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 76 s~d~sIrvWd~~t~~---L-~gH~~~V~sLafSPDG~~La-SGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg 150 (792)
...+.|..++..... + .........+++.+.+..|+ +-...+.|.+.+++.......+...-....+++++|.++
T Consensus 92 ~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g 171 (349)
T 3v64_C 92 VTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG 171 (349)
T ss_dssp TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTT
T ss_pred ccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcC
Confidence 345566666654332 1 11223457889998555554 445568899999876544444444445678999998555
Q ss_pred CEEEEEeCC-CeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 151 EILASGSLD-HEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 151 ~lLaSgS~D-gtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
.++++-..+ +.|..+++.......... .-...+.+++++++..|+.+. .+.|..+|+...... .........-
T Consensus 172 ~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~---~~~~~~~~~P 248 (349)
T 3v64_C 172 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---AVISQGLPHP 248 (349)
T ss_dssp EEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEECSSCSSE
T ss_pred eEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE---EEEeCCCCCc
Confidence 555565555 788888887543332222 334578999998877777665 456999998754321 1222223345
Q ss_pred EEEEEccCCCeEEEE
Q 036953 227 RAVHFHPHAAPFVLT 241 (792)
Q Consensus 227 tsVafSPdG~~LlaS 241 (792)
..+++. +..++.+
T Consensus 249 ~giav~--~~~ly~t 261 (349)
T 3v64_C 249 FAITVF--EDSLYWT 261 (349)
T ss_dssp EEEEEE--TTEEEEE
T ss_pred eEEEEE--CCEEEEe
Confidence 666662 3345444
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.18 Score=55.19 Aligned_cols=193 Identities=13% Similarity=0.112 Sum_probs=114.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEeeecccceeeC-CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC--CCeE
Q 036953 5 SWPHDQNSLRSQPSNHLRRRARNVSRLLAHREIS-PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE--AESL 81 (792)
Q Consensus 5 ~w~~~~~~~~~~~~~s~~s~~r~V~~l~~~rels-~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~--d~sI 81 (792)
.|+...+...+.....-++....||++ ..+++. ....+++.+...+..++ +.. .-...+++... .++|
T Consensus 31 vw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l---~g~-----~~dla~as~R~~~~n~l 101 (355)
T 3amr_A 31 IWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPL---NGK-----KVDIAAASNRSEGKNTI 101 (355)
T ss_dssp EECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEE---TTE-----EEEEEEEEECSTTCCEE
T ss_pred EecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEeccccc---CCc-----eEeEEEEeCCCCCCCeE
Confidence 355443333333333345678889988 444444 22245555544443110 100 00011222233 4677
Q ss_pred EEEec--cCCCcCC---------CC-CCeEEEEE--cC-CCC-EEEEEECCCeEEEEECC-------CCcEEEEecCCCC
Q 036953 82 RHLSA--KYCPLVP---------PP-RSTIAAAF--SP-DGR-TLASTHGDHTVKIIDCQ-------TGNCLKVLSGHRR 138 (792)
Q Consensus 82 rvWd~--~t~~L~g---------H~-~~V~sLaf--SP-DG~-~LaSGS~DGtVrIWDl~-------tgk~v~~L~gH~~ 138 (792)
+++++ .+.++.. .. ..++.+++ ++ .++ ++++...+|.+..|++. +.+.++.|. -..
T Consensus 102 ~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgs 180 (355)
T 3amr_A 102 EIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNS 180 (355)
T ss_dssp EEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSS
T ss_pred EEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCC
Confidence 77754 3332211 11 45666777 77 454 67788889999999882 335667776 345
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECC-----CCcEEEEecc---CCCeeEEEE--cCCCc-EEEEEc--CCeEEEE
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDAN-----TSECIGSCDF---YRPIASIAF--HAEGE-LLAVAS--GHKLYIW 205 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~-----tg~~v~t~~h---~s~V~sVaf--SpdG~-~LasgS--dd~V~IW 205 (792)
.+..+...+ ....|+.+-+|.-|..+|.+ +++.+..+.. ...+..|+. .++++ +|++++ ++.+.+|
T Consensus 181 q~EgcvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy 259 (355)
T 3amr_A 181 QTEGMAADD-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY 259 (355)
T ss_dssp CEEEEEEET-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred CcceEEEcC-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence 788899988 77888889999877777755 3456665532 246888887 45555 677666 5669999
Q ss_pred ECC
Q 036953 206 PYN 208 (792)
Q Consensus 206 Dlr 208 (792)
|..
T Consensus 260 dr~ 262 (355)
T 3amr_A 260 DRQ 262 (355)
T ss_dssp ESS
T ss_pred ECC
Confidence 986
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.14 Score=59.26 Aligned_cols=134 Identities=9% Similarity=0.112 Sum_probs=84.1
Q ss_pred CCCC---EEEEEECCCeEEEEECCCCcEEEEecCCCC--Cc---------------------------------------
Q 036953 105 PDGR---TLASTHGDHTVKIIDCQTGNCLKVLSGHRR--TP--------------------------------------- 140 (792)
Q Consensus 105 PDG~---~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~--~V--------------------------------------- 140 (792)
.+|+ .++.++.+|.++++|..+|+.+..+..... ..
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4674 678899999999999999998877653210 00
Q ss_pred ----EEEEEccCCCCEEEEEe---------------------------------CCCeEEEEECCCCcEEEEeccCCCee
Q 036953 141 ----WVVRFHPLRSEILASGS---------------------------------LDHEVRLWDANTSECIGSCDFYRPIA 183 (792)
Q Consensus 141 ----tsVafSP~dg~lLaSgS---------------------------------~DgtVrLWDl~tg~~v~t~~h~s~V~ 183 (792)
..++++| +..+++... .++.|..||+.+++.++.+....++.
T Consensus 411 g~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~ 489 (582)
T 1flg_A 411 GKNWNPMAYSQ-DTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLW 489 (582)
T ss_dssp SSCSSCCEECT-TTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCC
T ss_pred ccCCCCceECC-CCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCc
Confidence 1245666 333333322 26889999999999998876444333
Q ss_pred EEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCe--EEEEEccCCCeEEEEEe
Q 036953 184 SIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSL--RAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 184 sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sV--tsVafSPdG~~LlaS~s 243 (792)
.-.....+.+++.++ ++.|+.||.++++... .......+ .-+.|..+|+.+++...
T Consensus 490 ~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW----~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 490 AGVLATAGNLVFTGTGDGYFKAFDAKSGKELW----KFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp SCCEEETTTEEEEECTTSEEEEEETTTCCEEE----EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ccceEeCCCEEEEECCCCcEEEEECCCCCEEE----EecCCCCcccCceEEEECCEEEEEEEc
Confidence 222222455666666 6679999999998653 22212222 23567778875555443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.019 Score=63.01 Aligned_cols=87 Identities=9% Similarity=0.026 Sum_probs=70.1
Q ss_pred EEEcCCCCEEEEEEC---------CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC-EEEEEe-CCCeEEEEECCC
Q 036953 101 AAFSPDGRTLASTHG---------DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE-ILASGS-LDHEVRLWDANT 169 (792)
Q Consensus 101 LafSPDG~~LaSGS~---------DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~-lLaSgS-~DgtVrLWDl~t 169 (792)
++|++|+++++++.. ++.+.++|+.+++.+..+.... ...++.|+| |++ ++++.. .+++|.++|+.+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQ-DGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECC-SSSCEEEEEETTTTEEEEEESSS
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECC-CCCEEEEEccCCCCeEEEEECCC
Confidence 689999998887643 2356699999999888886433 578999999 665 677777 699999999999
Q ss_pred CcEEEEeccCCCeeEEEEcC
Q 036953 170 SECIGSCDFYRPIASIAFHA 189 (792)
Q Consensus 170 g~~v~t~~h~s~V~sVafSp 189 (792)
++.+.++.-......+++++
T Consensus 347 ~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 347 DQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp CEEEEECCCCSCCCEEECCC
T ss_pred CcEEEEEECCCCCCEEEeec
Confidence 99999998777777777654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.26 Score=57.83 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=91.2
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcC----C-CCCCeEEEEEcC--CCCEEEEEEC------CCeEEEEECCCCcEEEEecC
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLV----P-PPRSTIAAAFSP--DGRTLASTHG------DHTVKIIDCQTGNCLKVLSG 135 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~----g-H~~~V~sLafSP--DG~~LaSGS~------DGtVrIWDl~tgk~v~~L~g 135 (792)
+.+++....++.|..+|..++++. . .......+..+| .+..++++.. ++.|..+|..+|+.+..+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 456777777888888888776431 1 000001111112 2345555543 58999999999999988852
Q ss_pred CC---C----------------------------CcEEEEEccCCCCEEEEEeCCC-------------------eEEEE
Q 036953 136 HR---R----------------------------TPWVVRFHPLRSEILASGSLDH-------------------EVRLW 165 (792)
Q Consensus 136 H~---~----------------------------~VtsVafSP~dg~lLaSgS~Dg-------------------tVrLW 165 (792)
.. . ....+++.+ +..+++.++.++ .|..+
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 11 0 012367888 667888877665 39999
Q ss_pred ECCCCcEEEEeccC----------CCeeEEEEcCCCc---EEEEEc-CCeEEEEECCCCCcc
Q 036953 166 DANTSECIGSCDFY----------RPIASIAFHAEGE---LLAVAS-GHKLYIWPYNNKEEA 213 (792)
Q Consensus 166 Dl~tg~~v~t~~h~----------s~V~sVafSpdG~---~LasgS-dd~V~IWDlrt~~~~ 213 (792)
|.++++.++.+... .+.....+..+|+ .++.++ ++.++++|..+++..
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 99999999888532 2333333334665 566666 556999999998754
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.56 Score=48.77 Aligned_cols=114 Identities=14% Similarity=0.197 Sum_probs=78.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---CCcEEEEec-------CCCCCcEEEEEccCCCCEEEEEeCCCeE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ---TGNCLKVLS-------GHRRTPWVVRFHPLRSEILASGSLDHEV 162 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~---tgk~v~~L~-------gH~~~VtsVafSP~dg~lLaSgS~DgtV 162 (792)
........++|+|+++.|+++.......||.++ ..+.+..+. .+...+.+++++|..+++++.....+.+
T Consensus 118 ~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L 197 (255)
T 3qqz_A 118 PTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRAL 197 (255)
T ss_dssp CCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred cccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeE
Confidence 345668999999998888877765555555543 112223221 1344678999999777788888888899
Q ss_pred EEEECCCCcEEEEeccC----------CCeeEEEEcCCCcEEEEEcCCeEEEEEC
Q 036953 163 RLWDANTSECIGSCDFY----------RPIASIAFHAEGELLAVASGHKLYIWPY 207 (792)
Q Consensus 163 rLWDl~tg~~v~t~~h~----------s~V~sVafSpdG~~LasgSdd~V~IWDl 207 (792)
..+|.. ++.+..+.-. .....|+|.++|++++++-.+-++.+.-
T Consensus 198 ~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 198 QEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred EEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 999976 5566655322 3678999999998666654554666643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.42 Score=51.92 Aligned_cols=161 Identities=9% Similarity=0.014 Sum_probs=95.0
Q ss_pred CCCeEEEEeccCCC---c-CCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC
Q 036953 77 EAESLRHLSAKYCP---L-VPPPRSTIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE 151 (792)
Q Consensus 77 ~d~sIrvWd~~t~~---L-~gH~~~V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~ 151 (792)
..+.|..++..... + .........+++++.+..|+.. ...+.|.+.+++.......+...-....++++.|.++.
T Consensus 136 ~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ 215 (386)
T 3v65_B 136 TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 215 (386)
T ss_dssp TTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred CCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCe
Confidence 44556666554331 1 1112345678888855555444 45678988888755444444444466799999984555
Q ss_pred EEEEEeCC-CeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeE
Q 036953 152 ILASGSLD-HEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLR 227 (792)
Q Consensus 152 lLaSgS~D-gtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVt 227 (792)
++++-..+ +.|..+++......... ..-...+.++|++++..|+.+. .+.|..+|+...... ...........
T Consensus 216 ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~~~~~~~~~P~ 292 (386)
T 3v65_B 216 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---AVISQGLPHPF 292 (386)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE---EEECSSCSSEE
T ss_pred EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE---EEEECCCCCce
Confidence 55555445 78888888754433333 2334578999998877776665 455999998654321 12222233456
Q ss_pred EEEEccCCCeEEEEE
Q 036953 228 AVHFHPHAAPFVLTA 242 (792)
Q Consensus 228 sVafSPdG~~LlaS~ 242 (792)
.+++ ++..++.+.
T Consensus 293 giav--~~~~ly~td 305 (386)
T 3v65_B 293 AITV--FEDSLYWTD 305 (386)
T ss_dssp EEEE--ETTEEEEEE
T ss_pred EEEE--ECCEEEEee
Confidence 6666 233454443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.27 Score=54.59 Aligned_cols=139 Identities=15% Similarity=0.148 Sum_probs=86.0
Q ss_pred CcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEECCC----e-EEEEECCCCcE-EEEecCCCCC
Q 036953 69 KRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTHGDH----T-VKIIDCQTGNC-LKVLSGHRRT 139 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS~DG----t-VrIWDl~tgk~-v~~L~gH~~~ 139 (792)
+..||.....+.|+.++...+. +.........++|+++|+ |+.+...+ . +...+...+.. ...+. ....
T Consensus 152 ~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~ 229 (433)
T 4hw6_A 152 YDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARG 229 (433)
T ss_dssp TCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSS
T ss_pred CCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCC
Confidence 3566666554778888875553 233445689999999999 55554321 2 33333322211 11222 2344
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-c--cCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCC
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-D--FYRPIASIAFHAEGELLAVAS--GHKLYIWPYNN 209 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~--h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt 209 (792)
..+++++|.++.++++-..++.|+.+|..++.....+ . .......++|+|+|++|+++. .+.|+.+|+..
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 5678899856666666667889999999877663322 2 222334799999999666665 45699988763
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.9 Score=46.99 Aligned_cols=141 Identities=10% Similarity=-0.008 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcE-EEEec---------CCCCCcEEEEEccCCCC-EEEEEeCCCeEEEEE
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC-LKVLS---------GHRRTPWVVRFHPLRSE-ILASGSLDHEVRLWD 166 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~-v~~L~---------gH~~~VtsVafSP~dg~-lLaSgS~DgtVrLWD 166 (792)
...++..+++..+++-..++.|.++|..+++. +.... +.-.....+ ++ +++ ++++-...+.|..+|
T Consensus 119 ~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv~d~~~~~I~~~~ 195 (306)
T 2p4o_A 119 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYVSNTEKMLLLRIP 195 (306)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEEEETTTTEEEEEE
T ss_pred cCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEEEeCCCCEEEEEE
Confidence 34555555554444444588899999876531 22111 111234556 77 555 555556778999999
Q ss_pred CCC-CcE--EEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEc---cCCCeEE
Q 036953 167 ANT-SEC--IGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFH---PHAAPFV 239 (792)
Q Consensus 167 l~t-g~~--v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafS---PdG~~Ll 239 (792)
+.. ++. ...+........++++++|+++++.. .++|.++|.. ++... ...........++++|. |+++.|+
T Consensus 196 ~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~-~~~~~~~~~~p~~~a~~g~~~d~~~Ly 273 (306)
T 2p4o_A 196 VDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI-IAQAEQGVIGSTAVAFGQTEGDCTAIY 273 (306)
T ss_dssp BCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE-EECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred eCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE-EeecccccCCceEEEEecccCCCCEEE
Confidence 874 321 11222124567789999998766654 4569999975 33210 00011123568899999 8988888
Q ss_pred EEEe
Q 036953 240 LTAE 243 (792)
Q Consensus 240 aS~s 243 (792)
++..
T Consensus 274 Vt~~ 277 (306)
T 2p4o_A 274 VVTN 277 (306)
T ss_dssp EEEC
T ss_pred EECC
Confidence 7775
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=1.2 Score=46.64 Aligned_cols=115 Identities=10% Similarity=-0.022 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC-CeEEEEECCCCcEE
Q 036953 96 RSTIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD-HEVRLWDANTSECI 173 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D-gtVrLWDl~tg~~v 173 (792)
.....+++++.+..|+.+ ...+.|.++|+........+........+++++|.++.++++.... +.|...++......
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~ 156 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 156 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE
Confidence 345788998755555544 5678999999875544444443445778999998444444554333 68888888643322
Q ss_pred EEe-ccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCC
Q 036953 174 GSC-DFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNK 210 (792)
Q Consensus 174 ~t~-~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~ 210 (792)
... ..-...+.+++++++..|+.+. .+.|..+|+...
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 222 2345678999999887777665 456999999753
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.14 Score=55.44 Aligned_cols=143 Identities=10% Similarity=0.140 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEE-ecC----CC--CCcEEEEE---ccCCCCEEEEEe---------
Q 036953 98 TIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKV-LSG----HR--RTPWVVRF---HPLRSEILASGS--------- 157 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~-L~g----H~--~~VtsVaf---SP~dg~lLaSgS--------- 157 (792)
-.+++|.+....|+.++ ..++|..||...+..... +.+ .. ..+.++.| .| ++.+++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccccc
Confidence 45789988666777666 689999999976644333 322 11 13578999 68 666766543
Q ss_pred ----CCCeEEEEECC---CCcEEEEecc--------------CCCeeEEEEcCCCcEEEEEc-C-CeEEEEECCCCCccc
Q 036953 158 ----LDHEVRLWDAN---TSECIGSCDF--------------YRPIASIAFHAEGELLAVAS-G-HKLYIWPYNNKEEAS 214 (792)
Q Consensus 158 ----~DgtVrLWDl~---tg~~v~t~~h--------------~s~V~sVafSpdG~~LasgS-d-d~V~IWDlrt~~~~~ 214 (792)
.+..|..+|+. +++.+..... ....+.++..++|+..++.+ . +.|..++.......
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~- 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS- 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE-
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe-
Confidence 16789999999 7776655431 12478999999999888877 4 55666666543211
Q ss_pred CCeEEec----CCCCeEEEEEccCCCeEEEEEe
Q 036953 215 SPIIVLK----TRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 215 ~~~~~~~----h~~sVtsVafSPdG~~LlaS~s 243 (792)
...... .....+.++++|+|+.|++...
T Consensus 173 -~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~ 204 (334)
T 2p9w_A 173 -TFAWESGNGGQRPGYSGITFDPHSNKLIAFGG 204 (334)
T ss_dssp -EEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred -eeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence 111111 1223679999999998877654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.15 Score=59.39 Aligned_cols=84 Identities=7% Similarity=-0.042 Sum_probs=50.8
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 158 LDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 158 ~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
.++.|..||+.+++.++......+...-...-.+.+++.++ ++.|+.||.++++... ...........-+.|..+|+
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW--~~~l~~g~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW--KFKIPSGAIGYPMTYTHKGT 528 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETTE
T ss_pred CcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE--EeeCCCCcEeccEEEEeCCE
Confidence 34789999999999998885443332211222455555566 6679999999998654 11122222223355667887
Q ss_pred eEEEEEe
Q 036953 237 PFVLTAE 243 (792)
Q Consensus 237 ~LlaS~s 243 (792)
.+++...
T Consensus 529 qyv~~~~ 535 (599)
T 1w6s_A 529 QYVAIYY 535 (599)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 5555443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=95.85 E-value=0.29 Score=51.93 Aligned_cols=163 Identities=11% Similarity=0.024 Sum_probs=101.4
Q ss_pred CCeEEEEeccCCC-----cCCCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCcE-EEEecCCCCCcEEEEEccCCC
Q 036953 78 AESLRHLSAKYCP-----LVPPPRSTIAAAFSPDGRTLA-STHGDHTVKIIDCQTGNC-LKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 78 d~sIrvWd~~t~~-----L~gH~~~V~sLafSPDG~~La-SGS~DGtVrIWDl~tgk~-v~~L~gH~~~VtsVafSP~dg 150 (792)
...|+.++..... +......+..++|++....|+ +-...+.|..+++..+.. ...+...-....++++.+.++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4456666665331 011123466889998555554 444578899999876632 222222234567899987466
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc---CCeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 151 EILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS---GHKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 151 ~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS---dd~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
.++++-...+.|.++++........+ ........++++|.+..|+.+. ..+|+.+++...... ......-..-
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~~~~~~l~~P 168 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF---IIINSEIYWP 168 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE---EEECSSCSCE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE---EEEECCCCCc
Confidence 66677667889999998765433333 3445678999998766555554 345888888654321 1122233456
Q ss_pred EEEEEccCCCeEEEEEe
Q 036953 227 RAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s 243 (792)
+.++|++++..|+.+-.
T Consensus 169 nglavd~~~~~lY~aD~ 185 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADA 185 (318)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred cEEEEeccCCEEEEEEC
Confidence 89999998887877653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.69 Score=55.61 Aligned_cols=165 Identities=10% Similarity=0.043 Sum_probs=106.7
Q ss_pred EeCCCeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCC----cEEEEecCCCCCcEEEEEc
Q 036953 75 WVEAESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLAST-HGDHTVKIIDCQTG----NCLKVLSGHRRTPWVVRFH 146 (792)
Q Consensus 75 ~s~d~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSG-S~DGtVrIWDl~tg----k~v~~L~gH~~~VtsVafS 146 (792)
......|+..+.... .+......+..++|++....|+.. ...+.|+.+++... .....+........+|++.
T Consensus 400 ~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 400 FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp EECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 344455776666533 233345668899999855555544 45678999998753 2334444345567889998
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc--C-CeEEEEECCCCCcccCCeEEecC
Q 036953 147 PLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS--G-HKLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 147 P~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS--d-d~V~IWDlrt~~~~~~~~~~~~h 222 (792)
+..++++++-...+.|.+.++........+. .......|+++|.+.+|+.+. . .+|...++...... ......
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~---~lv~~~ 556 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLVTEN 556 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE---EEECSS
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE---EEEeCC
Confidence 7455677777778899999998655443332 445688999999866666554 2 45999998655422 122233
Q ss_pred CCCeEEEEEccCCCeEEEEE
Q 036953 223 RRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~ 242 (792)
-...+.|++++.+..|+.+-
T Consensus 557 l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 557 IQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp CSCEEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEecCCCeEEEEe
Confidence 45788999998888777764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.63 E-value=1.4 Score=48.03 Aligned_cols=117 Identities=9% Similarity=-0.029 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEECCCCcE
Q 036953 95 PRSTIAAAFSPDGRTLA-STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DHEVRLWDANTSEC 172 (792)
Q Consensus 95 ~~~V~sLafSPDG~~La-SGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-DgtVrLWDl~tg~~ 172 (792)
......+++.+.+..|+ +-...+.|.+.+++.......+...-....++++.|.++.++.+-.. .+.|...++.....
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 34678999998555554 44557889999988665555555445568999999944445554422 36788888876443
Q ss_pred EEEec-cCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCC
Q 036953 173 IGSCD-FYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKE 211 (792)
Q Consensus 173 v~t~~-h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~ 211 (792)
..... .-...+.|++++++..|+.+. .+.|..+|+....
T Consensus 238 ~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 33332 335788999999888777765 4569999986544
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=2 Score=50.17 Aligned_cols=163 Identities=8% Similarity=-0.025 Sum_probs=108.0
Q ss_pred CCCeEEEEeccCCCc-----CCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCC
Q 036953 77 EAESLRHLSAKYCPL-----VPPPRSTIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 77 ~d~sIrvWd~~t~~L-----~gH~~~V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg 150 (792)
....|+..+...... ...-..+..++|+++...|+.+ ..++.|+.++++.......+..-.....++++.+.++
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 456677777654321 1223468899999966666555 4578899999876554444443334678899987456
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc---CCeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 151 EILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS---GHKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 151 ~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS---dd~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
+++++-...+.|.+.++........+ ..-.....++++|...+|+.+. ..+|...++..... ......-...
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~----~~l~~~~~~P 168 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----TTLVPNVGRA 168 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEECSCSSE
T ss_pred EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce----EEEECCCCCc
Confidence 66677667789999999765433333 3445678999998655555554 34588888866542 2233345667
Q ss_pred EEEEEccCCCeEEEEEe
Q 036953 227 RAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s 243 (792)
+.+++++++..|+.+-.
T Consensus 169 ~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 169 NGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred ceEEEccccCEEEEEEC
Confidence 89999998887877654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.68 Score=50.56 Aligned_cols=171 Identities=10% Similarity=0.131 Sum_probs=104.0
Q ss_pred EEEEeCCCeEEEEeccCCCcCCCC-CCeEEEEEcC----CCCE--E-EEEE-C--CCeEEEEECC--CCcEEEEecC---
Q 036953 72 LVSWVEAESLRHLSAKYCPLVPPP-RSTIAAAFSP----DGRT--L-ASTH-G--DHTVKIIDCQ--TGNCLKVLSG--- 135 (792)
Q Consensus 72 L~S~s~d~sIrvWd~~t~~L~gH~-~~V~sLafSP----DG~~--L-aSGS-~--DGtVrIWDl~--tgk~v~~L~g--- 135 (792)
++...+.+-|.++|..-..+.... +.++.+..-| .|+. + ++.. . +++|.+|++. +++ +..+..
T Consensus 43 ii~t~k~~gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~ 121 (355)
T 3amr_A 43 LITTNKKSGLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDH 121 (355)
T ss_dssp EEEEETTTEEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTS
T ss_pred EEEEcCCCCEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecccccc
Confidence 444555667778887433222112 4566666655 2332 3 3333 3 5789999774 333 555521
Q ss_pred ---CC-CCcEEEEE--ccCCCC-EEEEEeCCCeEEEEECC-------CCcEEEEeccCCCeeEEEEcCCCcEEEEEcCC-
Q 036953 136 ---HR-RTPWVVRF--HPLRSE-ILASGSLDHEVRLWDAN-------TSECIGSCDFYRPIASIAFHAEGELLAVASGH- 200 (792)
Q Consensus 136 ---H~-~~VtsVaf--SP~dg~-lLaSgS~DgtVrLWDl~-------tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd- 200 (792)
.. ..+.++|+ +|..+. +++....++.+..|++. +.+.+++|...+.+..+...+....|+.+-.+
T Consensus 122 pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~ 201 (355)
T 3amr_A 122 PIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDE 201 (355)
T ss_dssp CEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTT
T ss_pred CcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccc
Confidence 12 56778888 663443 67778889999999883 34667788888899999999988888888854
Q ss_pred eEEEEECCCCCccc-CCeEEecC---CCCeEEEEE--ccCCC-eEEEEEe
Q 036953 201 KLYIWPYNNKEEAS-SPIIVLKT---RRSLRAVHF--HPHAA-PFVLTAE 243 (792)
Q Consensus 201 ~V~IWDlrt~~~~~-~~~~~~~h---~~sVtsVaf--SPdG~-~LlaS~s 243 (792)
.|..||.+-..... ........ ...+..+++ .++++ +|++++.
T Consensus 202 GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ 251 (355)
T 3amr_A 202 AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ 251 (355)
T ss_dssp EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence 46666754222110 01112221 235778887 55666 6777774
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.29 E-value=2 Score=46.56 Aligned_cols=112 Identities=8% Similarity=0.016 Sum_probs=80.3
Q ss_pred eEEEEE---cCCCCEEEEEE-------------CCCeEEEEECC---CCcEEEEec--C-----------CCCCcEEEEE
Q 036953 98 TIAAAF---SPDGRTLASTH-------------GDHTVKIIDCQ---TGNCLKVLS--G-----------HRRTPWVVRF 145 (792)
Q Consensus 98 V~sLaf---SPDG~~LaSGS-------------~DGtVrIWDl~---tgk~v~~L~--g-----------H~~~VtsVaf 145 (792)
+..+.| .|+++.+++.. .+..|..||+. +++.+.... . -.....+++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 689999 68877777544 26779999999 787665543 1 1124788999
Q ss_pred ccCCCCEEEEEeCC-CeEEEEECCCCcEEEEe-cc-----CCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCC
Q 036953 146 HPLRSEILASGSLD-HEVRLWDANTSECIGSC-DF-----YRPIASIAFHAEGELLAVAS-GHKLYIWPYNNK 210 (792)
Q Consensus 146 SP~dg~lLaSgS~D-gtVrLWDl~tg~~v~t~-~h-----~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~ 210 (792)
.+ +++..++++.- +.|...|.........+ .. ....+.|+++|+|++|++.. .++|..+|++..
T Consensus 145 D~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 145 DR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred CC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 99 99999999988 88888877654332222 11 12367999999999888876 455999999843
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.046 Score=63.29 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=57.8
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCee--EEEEcCCCc-
Q 036953 116 DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIA--SIAFHAEGE- 192 (792)
Q Consensus 116 DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~--sVafSpdG~- 192 (792)
+|.|.-||+.+++.+..+.... .+..-.... .+.+++.++.|+.++.||.++++.++.+.....+. -+.|..+|+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 5789999999999988876332 222211122 35788889999999999999999999987555443 367777886
Q ss_pred EEEEEc
Q 036953 193 LLAVAS 198 (792)
Q Consensus 193 ~LasgS 198 (792)
++++.+
T Consensus 543 Yv~~~~ 548 (582)
T 1flg_A 543 YLGVTV 548 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 444443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=95.09 E-value=3.1 Score=43.99 Aligned_cols=115 Identities=9% Similarity=-0.059 Sum_probs=75.0
Q ss_pred CeEEEEEcCCCCEEE-EEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcEEE
Q 036953 97 STIAAAFSPDGRTLA-STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRLWDANTSECIG 174 (792)
Q Consensus 97 ~V~sLafSPDG~~La-SGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrLWDl~tg~~v~ 174 (792)
....+++.+.+..|+ +-...+.|.+++++.......+........++++.|.++.++.+-. ..+.|...++.......
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence 466789987555554 4445688999998755433344344556789999983444444432 35788888886543322
Q ss_pred Ee-ccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCC
Q 036953 175 SC-DFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKE 211 (792)
Q Consensus 175 t~-~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~ 211 (792)
.. ..-...+.+++++++..|+.+. .+.|..+|+....
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~ 199 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN 199 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc
Confidence 22 2234578999999877777665 4569999987543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.048 Score=62.87 Aligned_cols=81 Identities=10% Similarity=0.106 Sum_probs=56.6
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCe--eEEEEcCCCcE
Q 036953 116 DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPI--ASIAFHAEGEL 193 (792)
Q Consensus 116 DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V--~sVafSpdG~~ 193 (792)
++.|..||+.+++.+..+... ..+.+..+.. .+.+++.++.|+.|+.||.++++.++.+.....+ ..+.+..+|+.
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~ 520 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCeEEEEECCCCCEEEEecCC-CCccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence 478999999999998887632 2333322232 4567777999999999999999999998644332 23445577875
Q ss_pred EEEEc
Q 036953 194 LAVAS 198 (792)
Q Consensus 194 LasgS 198 (792)
++...
T Consensus 521 yv~~~ 525 (571)
T 2ad6_A 521 YIGSM 525 (571)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.32 Score=53.99 Aligned_cols=145 Identities=11% Similarity=0.055 Sum_probs=86.4
Q ss_pred CCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC---Ce-EEEEECCC
Q 036953 96 RSTIAAAFSPD--GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD---HE-VRLWDANT 169 (792)
Q Consensus 96 ~~V~sLafSPD--G~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D---gt-VrLWDl~t 169 (792)
.....++|+|+ ...|+.+...+.|+.+|..+++.... ........+++|++ +++++++.... .. +...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCC
Confidence 34678999984 45566665548899999987765444 34455689999999 77766554321 12 33333222
Q ss_pred CcE-EEEeccCCCeeEEEEcC-CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 170 SEC-IGSCDFYRPIASIAFHA-EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 170 g~~-v~t~~h~s~V~sVafSp-dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+.. ...+........+++++ +|.++++-. ++.|+.+|..++.... ..........-..++|+|++++|+++..
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 110 11222234456788999 566554543 4569999987665311 1111122233457999999997776654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.89 E-value=1.6 Score=52.50 Aligned_cols=117 Identities=10% Similarity=-0.034 Sum_probs=80.0
Q ss_pred CCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC-CeEEEEECCCCcE
Q 036953 95 PRSTIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD-HEVRLWDANTSEC 172 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D-gtVrLWDl~tg~~ 172 (792)
......|++.+.++.|+.+ ...+.|.+.+++.......+...-....+|++.|..+.++++-..+ +.|...++.....
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~ 549 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 549 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce
Confidence 3456789999877666555 4578999999886554444444455689999999445555554333 6788889876544
Q ss_pred EEEec-cCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCC
Q 036953 173 IGSCD-FYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKE 211 (792)
Q Consensus 173 v~t~~-h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~ 211 (792)
...+. .-...+.|++++.+..|+.+. .++|..+|+....
T Consensus 550 ~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 550 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 43333 335788999998877777765 4569999986554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.43 Score=54.40 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=87.4
Q ss_pred CeEEEEEcC-CCCEEEEEEC-CCeEEEEECCCCcEEEEecCC---CCCcEEEEE-------ccCCCCEEEEEeCCC----
Q 036953 97 STIAAAFSP-DGRTLASTHG-DHTVKIIDCQTGNCLKVLSGH---RRTPWVVRF-------HPLRSEILASGSLDH---- 160 (792)
Q Consensus 97 ~V~sLafSP-DG~~LaSGS~-DGtVrIWDl~tgk~v~~L~gH---~~~VtsVaf-------SP~dg~lLaSgS~Dg---- 160 (792)
....|+|+| +...|+.+.. .+.|++.|+..+.....+..- ......++| ++ +++.|+.....+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467999998 4555555544 467999998877655444321 234789999 98 777555554443
Q ss_pred ---eEEEEECCC-CcEE-----EEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECC-------CCCcc---------
Q 036953 161 ---EVRLWDANT-SECI-----GSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYN-------NKEEA--------- 213 (792)
Q Consensus 161 ---tVrLWDl~t-g~~v-----~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlr-------t~~~~--------- 213 (792)
.|.+.+... ++.. ..+........++.+|++..|+++. ++.|+.+|+. ++...
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266666443 2221 1222223445778899655555443 5569999997 44430
Q ss_pred -cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 214 -SSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 214 -~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
............-+.++|+|+|+.|+++-.
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~ 329 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVI 329 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeC
Confidence 001112223345689999999997666543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.40 E-value=1.1 Score=47.90 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=61.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE--EEEec---CCCCCcEEEEEccCC----CCEEEEEeCC-----CeE
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC--LKVLS---GHRRTPWVVRFHPLR----SEILASGSLD-----HEV 162 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~--v~~L~---gH~~~VtsVafSP~d----g~lLaSgS~D-----gtV 162 (792)
....++|.|||+ |+++..++.|++++ .++. +..+. .-.....+++|+| + +.++++-..+ +.|
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEE
Confidence 477999999998 45556779999998 4442 22221 1245678999999 5 4555554433 678
Q ss_pred EEEECCCCc-----EE-EEecc----CCCeeEEEEcCCCcEEEEEc
Q 036953 163 RLWDANTSE-----CI-GSCDF----YRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 163 rLWDl~tg~-----~v-~t~~h----~s~V~sVafSpdG~~LasgS 198 (792)
..|++..++ .+ ..+.. ......++|.|||.++++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 888876532 11 11221 12346899999997666643
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=4.3 Score=47.13 Aligned_cols=164 Identities=10% Similarity=0.011 Sum_probs=101.8
Q ss_pred CCCeEEEEeccCC-----CcCCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCcE-EEEecCCCCCcEEEEEccCC
Q 036953 77 EAESLRHLSAKYC-----PLVPPPRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQTGNC-LKVLSGHRRTPWVVRFHPLR 149 (792)
Q Consensus 77 ~d~sIrvWd~~t~-----~L~gH~~~V~sLafSPDG~~LaSGS~-DGtVrIWDl~tgk~-v~~L~gH~~~VtsVafSP~d 149 (792)
..+.|+..+.... .+...-+.+..++|++.+..|+.+.. .+.|..++++.... ...+..--....++++.+.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 3455666665432 12233456889999997776666554 67898899875532 23343333578899999845
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc---CCeEEEEECCCCCcccCCeEEecCCCC
Q 036953 150 SEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS---GHKLYIWPYNNKEEASSPIIVLKTRRS 225 (792)
Q Consensus 150 g~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS---dd~V~IWDlrt~~~~~~~~~~~~h~~s 225 (792)
++++++-...+.|.+.|+........+ ..-.....|+++|.+.+|+.+. ..+|...++...... ......-..
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~---~l~~~~~~~ 172 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF---IIINSEIYW 172 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEECSSCSS
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE---EEEeCCCCC
Confidence 566666667889999999765443333 3445577899999766555554 245777777654321 122223456
Q ss_pred eEEEEEccCCCeEEEEEe
Q 036953 226 LRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 226 VtsVafSPdG~~LlaS~s 243 (792)
-+.+++++++..|+.+-.
T Consensus 173 P~Glald~~~~~LY~aD~ 190 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWADA 190 (619)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred CcEEEEEccCCEEEEEeC
Confidence 789999998887777643
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=94.21 E-value=1.9 Score=45.34 Aligned_cols=142 Identities=11% Similarity=0.064 Sum_probs=84.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC--CCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDC--QTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl--~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
++...+..+++.+++..++.+...+..+-+|- .+-+.+. ......+..+.+.+ ++.++ .++.++.+++++...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNS 235 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCC
Confidence 44567899999999887776644433333442 2222221 23556788999988 66655 4566888887753333
Q ss_pred cEEEEec-----cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEe---cCCCCeEEEEEccCCCeEEEEE
Q 036953 171 ECIGSCD-----FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVL---KTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 171 ~~v~t~~-----h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~---~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+....+. ....+.++.+.+++.+++++.++.| .+..+.++... ... .....++++.|.+++. +++.+
T Consensus 236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~---~~~~~~~~~~~~~~v~~~~~~~-~~~~G 310 (327)
T 2xbg_A 236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQ---QDVDVKKVPSNFYKILFFSPDQ-GFILG 310 (327)
T ss_dssp EEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCE---ECGGGTTSSSCCCEEEEEETTE-EEEEC
T ss_pred CeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccE---EcCccCCCCCCeEEEEEECCCc-eEEEc
Confidence 3322222 1235889999998888888877666 34444443221 111 1235678888875554 44444
Q ss_pred e
Q 036953 243 E 243 (792)
Q Consensus 243 s 243 (792)
.
T Consensus 311 ~ 311 (327)
T 2xbg_A 311 Q 311 (327)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=1.1 Score=48.09 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=81.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-EEEEec---CCCCCcEEEEEccC---CCCEEEEEeC---C----Ce
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN-CLKVLS---GHRRTPWVVRFHPL---RSEILASGSL---D----HE 161 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk-~v~~L~---gH~~~VtsVafSP~---dg~lLaSgS~---D----gt 161 (792)
.....|+|.|||+ |+++..++.|+++| .+++ .+..+. .-.....+|+|+|+ ++.++++-+. + ..
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3478999999997 55556779999997 3454 222221 12356889999993 3555555442 3 56
Q ss_pred EEEEECCCC--c-----EE-EEec--cCCCeeEEEEcCCCcEEEEEcC--------------CeEEEEECCCCCcc----
Q 036953 162 VRLWDANTS--E-----CI-GSCD--FYRPIASIAFHAEGELLAVASG--------------HKLYIWPYNNKEEA---- 213 (792)
Q Consensus 162 VrLWDl~tg--~-----~v-~t~~--h~s~V~sVafSpdG~~LasgSd--------------d~V~IWDlrt~~~~---- 213 (792)
|..|++... . .+ ..+. .......++|.|||.++++.++ ++|.-+|....-..
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777877654 1 11 1122 1223567999999987776442 24555554322000
Q ss_pred -cCCeEEecCCCCeEEEEEcc-CCCeEEEEE
Q 036953 214 -SSPIIVLKTRRSLRAVHFHP-HAAPFVLTA 242 (792)
Q Consensus 214 -~~~~~~~~h~~sVtsVafSP-dG~~LlaS~ 242 (792)
.......++ .....++|+| +++ |.++-
T Consensus 187 ~~~~i~a~G~-rnp~Gla~d~~~g~-l~v~d 215 (354)
T 3a9g_A 187 PNSPIWSYGH-RNPQGIDWHRASGV-MVATE 215 (354)
T ss_dssp TTCCEEEECC-SCCCEEEECTTTCC-EEEEE
T ss_pred CCCcEEEEcc-CCcceEEEeCCCCC-EEEEe
Confidence 001222223 3456899999 565 54443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.05 E-value=7.4 Score=41.45 Aligned_cols=142 Identities=9% Similarity=0.049 Sum_probs=75.5
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEE-eccCCCcCCCCCCeEEEEEcCC---CCEEEEEEC-C-
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHL-SAKYCPLVPPPRSTIAAAFSPD---GRTLASTHG-D- 116 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvW-d~~t~~L~gH~~~V~sLafSPD---G~~LaSGS~-D- 116 (792)
....++|.++++++.+-. ..+|+... ++....+ +.. ....-......++|+|+ +..|+.+.. +
T Consensus 32 ~P~~ia~~pdG~l~V~e~--------~g~I~~i~-~g~~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~ 100 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAER--------PGRIRLFR-EGRLSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAE 100 (352)
T ss_dssp CEEEEEECTTSCEEEEET--------TTEEEEEE-TTEEEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECT
T ss_pred CceEEEEcCCCeEEEEeC--------CCeEEEEE-CCCccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCC
Confidence 456778888877543321 12333333 3333322 111 11222456899999998 556655443 2
Q ss_pred ----CeEEEEECCCCc-----EE-EEec---CCCCCcEEEEEccCCCCEEEEEeCC-------------CeEEEEECCC-
Q 036953 117 ----HTVKIIDCQTGN-----CL-KVLS---GHRRTPWVVRFHPLRSEILASGSLD-------------HEVRLWDANT- 169 (792)
Q Consensus 117 ----GtVrIWDl~tgk-----~v-~~L~---gH~~~VtsVafSP~dg~lLaSgS~D-------------gtVrLWDl~t- 169 (792)
+.|..|+...++ .+ ..+. +.......++|.| ++.++++.+.. +.|.-+|...
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~ 179 (352)
T 2ism_A 101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE 179 (352)
T ss_dssp TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS
T ss_pred CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC
Confidence 578888876432 11 2233 1112346899999 88777775422 4566666543
Q ss_pred -------------CcEEEEeccCCCeeEEEEcC-CCcEEEEE
Q 036953 170 -------------SECIGSCDFYRPIASIAFHA-EGELLAVA 197 (792)
Q Consensus 170 -------------g~~v~t~~h~s~V~sVafSp-dG~~Lasg 197 (792)
...+....+ .....++|+| +|+++++-
T Consensus 180 ~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 180 PAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp BCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEE
T ss_pred CCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEE
Confidence 111222222 2356789999 56655554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=93.71 E-value=3.5 Score=43.35 Aligned_cols=144 Identities=14% Similarity=0.131 Sum_probs=82.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE-EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC--CCC
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL-KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA--NTS 170 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v-~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl--~tg 170 (792)
+...+..+.+.+++..++.+ .++.|.. ..+.++.- ....++...+..+.+.+ ++.+++.+...+.++-+|- .+-
T Consensus 120 ~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW 196 (327)
T 2xbg_A 120 LPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAW 196 (327)
T ss_dssp CSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSSC
T ss_pred CCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCce
Confidence 34567888887777666554 4564432 22334322 22235566789999998 7777766644444444553 111
Q ss_pred cEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEE-ecCCCCeEEEEEccCCCeEEEEE
Q 036953 171 ECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIV-LKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 171 ~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~-~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+.+ .......+..+.+.+++++++++.++.+++.+...++........ ......+..+.|.+++. +++.+
T Consensus 197 ~~~-~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g 267 (327)
T 2xbg_A 197 EPH-NRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAG 267 (327)
T ss_dssp EEE-ECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEE
T ss_pred eEC-CCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE-EEEEe
Confidence 222 123456788999999998888777777777643222211100000 11234588999998777 44444
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.56 Score=53.46 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=86.9
Q ss_pred cEEEEEeC-CCeEEEEeccCCCcC---C----CCCCeEEEEE-------cCCCCEEEEEECCC-------eEEEEECCC-
Q 036953 70 RGLVSWVE-AESLRHLSAKYCPLV---P----PPRSTIAAAF-------SPDGRTLASTHGDH-------TVKIIDCQT- 126 (792)
Q Consensus 70 ~~L~S~s~-d~sIrvWd~~t~~L~---g----H~~~V~sLaf-------SPDG~~LaSGS~DG-------tVrIWDl~t- 126 (792)
..|+.+.. .+.|+++|.+.+.+. . .......++| ++++++|+++...+ .|.+++...
T Consensus 152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~ 231 (496)
T 3kya_A 152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD 231 (496)
T ss_dssp EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT
T ss_pred CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC
Confidence 44555543 466888887765321 1 2235899999 99999777776654 266665433
Q ss_pred CcEE-----EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-------CCcE--------------EEEeccCC
Q 036953 127 GNCL-----KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN-------TSEC--------------IGSCDFYR 180 (792)
Q Consensus 127 gk~v-----~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~-------tg~~--------------v~t~~h~s 180 (792)
++.. ..+.. .....+++++|.++.++++-..++.|..+|+. ++.. +.......
T Consensus 232 G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~ 310 (496)
T 3kya_A 232 GTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS 310 (496)
T ss_dssp SCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS
T ss_pred Cceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCC
Confidence 1211 22221 12345688999666677777788899999987 5543 22223345
Q ss_pred CeeEEEEcCCCcEEEEEc--CCeEEEEECC
Q 036953 181 PIASIAFHAEGELLAVAS--GHKLYIWPYN 208 (792)
Q Consensus 181 ~V~sVafSpdG~~LasgS--dd~V~IWDlr 208 (792)
....++|+|+|++|+.+. .+.|+.+|..
T Consensus 311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 311 WEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 567999999999666654 5568886654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.66 E-value=2.6 Score=47.04 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=61.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE--EEecC------CCCCcEEEEEccC---CCCEEEEEeC-------
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL--KVLSG------HRRTPWVVRFHPL---RSEILASGSL------- 158 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v--~~L~g------H~~~VtsVafSP~---dg~lLaSgS~------- 158 (792)
....|+|.|+|+.+++-...+.|++++..+++.. ..+.. ..+...+|+|+|+ ++.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4679999999986666443357888886555432 22321 2456779999993 4444444432
Q ss_pred -----CCeEEEEECCCC-------cEEE-Eec--cCCCeeEEEEcCCCcEEEEEcC
Q 036953 159 -----DHEVRLWDANTS-------ECIG-SCD--FYRPIASIAFHAEGELLAVASG 199 (792)
Q Consensus 159 -----DgtVrLWDl~tg-------~~v~-t~~--h~s~V~sVafSpdG~~LasgSd 199 (792)
...|.-|++... +.+. .+. .......|+|.|||+++++.++
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555655332 1111 122 2345789999999987776553
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=93.61 E-value=0.12 Score=61.17 Aligned_cols=163 Identities=11% Similarity=0.054 Sum_probs=97.8
Q ss_pred CCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC----CcEEEEecCCCCCcEEEEEccCC
Q 036953 78 AESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQT----GNCLKVLSGHRRTPWVVRFHPLR 149 (792)
Q Consensus 78 d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~t----gk~v~~L~gH~~~VtsVafSP~d 149 (792)
...|+..+..... +......+..++|++.+..|+... ..+.|+.+++.. ......+........+|++.+.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 3456666665432 223334567899998776666654 457899999875 22222222222345678887535
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-C--CeEEEEECCCCCcccCCeEEecCCCC
Q 036953 150 SEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS-G--HKLYIWPYNNKEEASSPIIVLKTRRS 225 (792)
Q Consensus 150 g~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-d--d~V~IWDlrt~~~~~~~~~~~~h~~s 225 (792)
++++++-...+.|.++|+........+. .......++++|.+.+|+.+. . ++|+.+++...... ......-..
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~---~l~~~~l~~ 541 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLVTENIQW 541 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC---EESCSSCSS
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee---EEEeCCCCC
Confidence 6666666667889999987655444433 234567889999766555544 2 45888877543321 111122344
Q ss_pred eEEEEEccCCCeEEEEEe
Q 036953 226 LRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 226 VtsVafSPdG~~LlaS~s 243 (792)
-+.|+|+|++..|+.+-.
T Consensus 542 PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CCCEEECTTTCCEEEEET
T ss_pred ccEEEEeccCCEEEEEec
Confidence 568999998887776653
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=93.52 E-value=1.4 Score=47.24 Aligned_cols=143 Identities=17% Similarity=0.057 Sum_probs=79.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-------CCCCCcEEEEEccC---CCCEEEEEeC-------C
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-------GHRRTPWVVRFHPL---RSEILASGSL-------D 159 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-------gH~~~VtsVafSP~---dg~lLaSgS~-------D 159 (792)
....|+|.|+|++|+++...|.|++++.. ++....+. ...+....++|+|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 36799999999845556678999999853 33211111 12345689999993 3445554333 2
Q ss_pred CeEEEEECCCC--c--EEE-Ee---c----cCCCeeEEEEcCCCcEEEEEcC--------------CeEEEEECCCCCcc
Q 036953 160 HEVRLWDANTS--E--CIG-SC---D----FYRPIASIAFHAEGELLAVASG--------------HKLYIWPYNNKEEA 213 (792)
Q Consensus 160 gtVrLWDl~tg--~--~v~-t~---~----h~s~V~sVafSpdG~~LasgSd--------------d~V~IWDlrt~~~~ 213 (792)
..|..|++... + ... .+ . .......+.|.|||.++++.++ ++|.-+|....-..
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666666532 1 111 11 1 1123467999999976666543 35666666432100
Q ss_pred ---------cCCeEEecCCCCeEEEEEcc-CCCeEEEE
Q 036953 214 ---------SSPIIVLKTRRSLRAVHFHP-HAAPFVLT 241 (792)
Q Consensus 214 ---------~~~~~~~~h~~sVtsVafSP-dG~~LlaS 241 (792)
.........-.....++|+| +|+ |.++
T Consensus 178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~-l~~~ 214 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNA-LWLN 214 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTE-EEEE
T ss_pred CCCCcCCCCCCccEEEEcCcCccceEEECCCCC-EEEE
Confidence 00112222334567899999 555 4443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.12 E-value=3 Score=45.19 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=81.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE--EEec----CCCCCcEEEEEccC---CCCEEEEEe--CCCeEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL--KVLS----GHRRTPWVVRFHPL---RSEILASGS--LDHEVRL 164 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v--~~L~----gH~~~VtsVafSP~---dg~lLaSgS--~DgtVrL 164 (792)
.....|+|.|||+.+++--..|.|++++..+++.. ..+. ...+...+|+|+|+ ++.+.++-+ .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 34789999999987666555899999987655532 2221 23456789999982 344444322 4455666
Q ss_pred EECCCC----------cEEE-Eec--cCCCeeEEEEcCCCcEEEEEcC--------------CeEEEEECCCCCcc----
Q 036953 165 WDANTS----------ECIG-SCD--FYRPIASIAFHAEGELLAVASG--------------HKLYIWPYNNKEEA---- 213 (792)
Q Consensus 165 WDl~tg----------~~v~-t~~--h~s~V~sVafSpdG~~LasgSd--------------d~V~IWDlrt~~~~---- 213 (792)
|.+..+ +.+. .+. .......|.|.|||.++++.++ ++|.-.+....-..
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf 191 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF 191 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence 665541 1111 121 2234567999999987776542 33444444322000
Q ss_pred -cCCeEEecCCCCeEEEEEccCCCeE
Q 036953 214 -SSPIIVLKTRRSLRAVHFHPHAAPF 238 (792)
Q Consensus 214 -~~~~~~~~h~~sVtsVafSPdG~~L 238 (792)
.......++ .....++|+|+|..+
T Consensus 192 ~~~~i~a~G~-RNp~Gla~dp~G~L~ 216 (347)
T 3das_A 192 PGSPVYSYGH-RNVQGLAWDDKQRLF 216 (347)
T ss_dssp TTCCEEEBCC-SBCCEEEECTTCCEE
T ss_pred CCCeEEeeCC-CCcceEEECCCCCEE
Confidence 001222233 445689999988733
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=12 Score=43.45 Aligned_cols=141 Identities=7% Similarity=-0.040 Sum_probs=90.7
Q ss_pred CCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEE-eCCCeEEEEECCCCcEE
Q 036953 96 RSTIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASG-SLDHEVRLWDANTSECI 173 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSg-S~DgtVrLWDl~tg~~v 173 (792)
.....+++++.+..|+.+ ...+.|.+.+++.......+...-....++++.|.++.++.+- +....|...++......
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 346789998866656555 4567899999876543333434445678999998455555543 23567888888765544
Q ss_pred EEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 174 GSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 174 ~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
.....-...+.++++++++.|+.+. .+.|..+|+..... . ...........+++.. ..++.+.
T Consensus 160 ~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~---v~~~~l~~P~glav~~--~~ly~tD 224 (628)
T 4a0p_A 160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-E---VIADDLPHPFGLTQYQ--DYIYWTD 224 (628)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E---EEEECCSCEEEEEEET--TEEEEEE
T ss_pred EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-E---EeeccCCCceEEEEEC--CEEEEec
Confidence 4444556788999999888777775 45699999976543 1 2222333445677653 4455554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=16 Score=42.41 Aligned_cols=166 Identities=8% Similarity=-0.002 Sum_probs=105.4
Q ss_pred EeCCCeEEEEeccCCCcC------CCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEEEEcc
Q 036953 75 WVEAESLRHLSAKYCPLV------PPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP 147 (792)
Q Consensus 75 ~s~d~sIrvWd~~t~~L~------gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP 147 (792)
......|+..+....... ..-..+..++|++.+..|+.+. ..+.|+.++++.......+...-..+.++++..
T Consensus 322 ~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~ 401 (619)
T 3s94_A 322 LARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDW 401 (619)
T ss_dssp EEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEET
T ss_pred EEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEec
Confidence 344556777776543211 1234578999998655565554 578899999876554444443345678899986
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc---CCeEEEEECCCCCcccCCeEEecCC
Q 036953 148 LRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS---GHKLYIWPYNNKEEASSPIIVLKTR 223 (792)
Q Consensus 148 ~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS---dd~V~IWDlrt~~~~~~~~~~~~h~ 223 (792)
.+++++.+-+..+.|.+.++........+ ..-....+++++|...+|+.+. ..+|...++...... ......-
T Consensus 402 ~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~---~l~~~~l 478 (619)
T 3s94_A 402 VARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV---VLVNTSL 478 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEECSSC
T ss_pred ccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE---EEEeCCC
Confidence 45667777677889999998765433223 2345678999999744444443 245777777654321 1222234
Q ss_pred CCeEEEEEccCCCeEEEEEe
Q 036953 224 RSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s 243 (792)
..-+.+++++++..|..+-.
T Consensus 479 ~~P~GlalD~~~~~LY~aD~ 498 (619)
T 3s94_A 479 GWPNGLALDYDEGKIYWGDA 498 (619)
T ss_dssp SCEEEEEEETTTTEEEEEET
T ss_pred CCCeeeEEcccCCEEEEEEC
Confidence 56789999998887776643
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=6 Score=42.98 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=84.8
Q ss_pred CeEEEEEcC--CCC-EEEEE-EC--CCeEEEEECCCC-c---EEEEecCC-CCCcEEEEEccCCCCEEEEEeC-------
Q 036953 97 STIAAAFSP--DGR-TLAST-HG--DHTVKIIDCQTG-N---CLKVLSGH-RRTPWVVRFHPLRSEILASGSL------- 158 (792)
Q Consensus 97 ~V~sLafSP--DG~-~LaSG-S~--DGtVrIWDl~tg-k---~v~~L~gH-~~~VtsVafSP~dg~lLaSgS~------- 158 (792)
....+.+.+ ++. +|+.+ .. +.+|.||++..+ + .+..+.+. -...+++.+.+ ++.++++...
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence 466666655 454 34444 33 567888877643 2 23334432 24578899999 8887777541
Q ss_pred ----------CCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 159 ----------DHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 159 ----------DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
.+.|..+|. ++.......-...+.++|+||+++|+++. .++|+.||+........... .......
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~-~~~~g~P 268 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV-LSFDTLV 268 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSEE
T ss_pred ccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEE-EeCCCCC
Confidence 234555554 33333334445678999999999888776 45699999874332221111 2234556
Q ss_pred EEEEEcc-CCCeEEEE
Q 036953 227 RAVHFHP-HAAPFVLT 241 (792)
Q Consensus 227 tsVafSP-dG~~LlaS 241 (792)
-.+++.+ +|+..+++
T Consensus 269 DGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 269 DNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEEEECTTTCCEEEEE
T ss_pred ceEEEeCCCCcEEEEe
Confidence 7888998 58855434
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=92.54 E-value=6.4 Score=44.14 Aligned_cols=104 Identities=12% Similarity=0.146 Sum_probs=69.8
Q ss_pred CCCCEEEEEECCCeEEEEECCCCcEEEEecCC----CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc---------
Q 036953 105 PDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH----RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE--------- 171 (792)
Q Consensus 105 PDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH----~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~--------- 171 (792)
.+|..++.+-. +.||.-++......+.+.-- ...|..+..+| ++++|+..+ +.+|.+-.+..+.
T Consensus 30 ~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 30 QNGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred cCCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 36666666543 57887777644444444422 23588899999 999999875 6689998887331
Q ss_pred ---EEEEec-------cCCCeeEEEEcCCC---cEEE-EEcCCeEEEEECCCCC
Q 036953 172 ---CIGSCD-------FYRPIASIAFHAEG---ELLA-VASGHKLYIWPYNNKE 211 (792)
Q Consensus 172 ---~v~t~~-------h~s~V~sVafSpdG---~~La-sgSdd~V~IWDlrt~~ 211 (792)
..+.+. ...+|..+.|||-+ ..|+ ..+++.|++||+.+..
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~ 160 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ 160 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence 122332 24679999999965 3444 4556779999998744
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=92.40 E-value=2.9 Score=48.43 Aligned_cols=94 Identities=4% Similarity=0.024 Sum_probs=61.5
Q ss_pred eEEEEeccCCCcC-------CCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCcEEEEecCC-CCCcEEEEEccCCC
Q 036953 80 SLRHLSAKYCPLV-------PPPRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQTGNCLKVLSGH-RRTPWVVRFHPLRS 150 (792)
Q Consensus 80 sIrvWd~~t~~L~-------gH~~~V~sLafSPDG~~LaSGS~-DGtVrIWDl~tgk~v~~L~gH-~~~VtsVafSP~dg 150 (792)
.+.+||..+++.. .+.....++++..+++.++.|+. +..+.+||..+++-...-.-+ ...-.++++.+ ++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg 298 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DG 298 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TS
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CC
Confidence 5778888766422 12333445778889999999984 568999998876533221111 12223455666 78
Q ss_pred CEEEEEe-CC-----CeEEEEECCCCcEEE
Q 036953 151 EILASGS-LD-----HEVRLWDANTSECIG 174 (792)
Q Consensus 151 ~lLaSgS-~D-----gtVrLWDl~tg~~v~ 174 (792)
++++.|+ .+ ..+.+||..+.+...
T Consensus 299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 299 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred eEEEEeCcccCCcccccceEeCCCCCccee
Confidence 8999988 44 579999998876544
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=92.26 E-value=4.3 Score=45.57 Aligned_cols=128 Identities=18% Similarity=0.164 Sum_probs=82.0
Q ss_pred cCCcEEEEEeCCCeEEEEeccCC----CcCCC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc----------
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYC----PLVPP----PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN---------- 128 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~----~L~gH----~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk---------- 128 (792)
..+..++.+. ++.||..+.... .+.-. -+.|..+..||+|++||..+ ++.|.|-.+..+.
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence 3344444433 466776665422 11111 23578899999999999875 5589998886321
Q ss_pred --EEEEecC------CCCCcEEEEEcc--CCCCEEEEEeCCCeEEEEECCCC--cEEEEec----------cCCCeeEEE
Q 036953 129 --CLKVLSG------HRRTPWVVRFHP--LRSEILASGSLDHEVRLWDANTS--ECIGSCD----------FYRPIASIA 186 (792)
Q Consensus 129 --~v~~L~g------H~~~VtsVafSP--~dg~lLaSgS~DgtVrLWDl~tg--~~v~t~~----------h~s~V~sVa 186 (792)
..+.+.- ....|..+.||| .++..|++-..|++||+||+... ++. .+. ....|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 1223321 256799999999 23458899999999999999862 333 221 124678888
Q ss_pred EcCCCcEEEEE
Q 036953 187 FHAEGELLAVA 197 (792)
Q Consensus 187 fSpdG~~Lasg 197 (792)
|..++-.|...
T Consensus 187 Fg~~~lTLYvl 197 (452)
T 3pbp_A 187 FSKDGLTLYCL 197 (452)
T ss_dssp ECTTSSCEEEE
T ss_pred EcCCCcEEEEE
Confidence 88877655553
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=92.09 E-value=0.61 Score=54.11 Aligned_cols=111 Identities=21% Similarity=0.226 Sum_probs=75.3
Q ss_pred EEEEcC-CCCEEEEEECCC-----------eEEEEECCCCcE--EEEec-CCCCCcEEEEEccCCCCEEEEEeC-CCeEE
Q 036953 100 AAAFSP-DGRTLASTHGDH-----------TVKIIDCQTGNC--LKVLS-GHRRTPWVVRFHPLRSEILASGSL-DHEVR 163 (792)
Q Consensus 100 sLafSP-DG~~LaSGS~DG-----------tVrIWDl~tgk~--v~~L~-gH~~~VtsVafSP~dg~lLaSgS~-DgtVr 163 (792)
.+++.+ +++.++.|+.+. .+.+||..+++- +..+. .+.....++++.. ++++++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 566777 888888887643 588999987752 23332 2334445677777 8899999984 56899
Q ss_pred EEECCCCcEEEEec--cCCCeeEEEEcCCCcEEEEEc-C------CeEEEEECCCCC
Q 036953 164 LWDANTSECIGSCD--FYRPIASIAFHAEGELLAVAS-G------HKLYIWPYNNKE 211 (792)
Q Consensus 164 LWDl~tg~~v~t~~--h~s~V~sVafSpdG~~LasgS-d------d~V~IWDlrt~~ 211 (792)
+||..+.+....-. ....-.+++..++|++++.|+ . ..+.+||..+.+
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 99998876543321 222234556677999999887 2 238999987754
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=90.63 E-value=8.1 Score=41.92 Aligned_cols=142 Identities=8% Similarity=0.086 Sum_probs=84.1
Q ss_pred CCeEEEEEcCCCCEEEEE------------ECCCeEEEEECCC--CcE-EEEecC-----CCCCcEEEEEccC-CCC-EE
Q 036953 96 RSTIAAAFSPDGRTLAST------------HGDHTVKIIDCQT--GNC-LKVLSG-----HRRTPWVVRFHPL-RSE-IL 153 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSG------------S~DGtVrIWDl~t--gk~-v~~L~g-----H~~~VtsVafSP~-dg~-lL 153 (792)
.....+...|+|..++++ ..+|.|.++|.++ .+. ...+.+ ......++.+.++ ++. +|
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345677778877655554 2689999999873 221 112222 2346677887662 232 44
Q ss_pred EEEe-C--CCeEEEEECCCC-c---EEEEecc--CCCeeEEEEcCCCcEEEEEcC------------------CeEEEEE
Q 036953 154 ASGS-L--DHEVRLWDANTS-E---CIGSCDF--YRPIASIAFHAEGELLAVASG------------------HKLYIWP 206 (792)
Q Consensus 154 aSgS-~--DgtVrLWDl~tg-~---~v~t~~h--~s~V~sVafSpdG~~LasgSd------------------d~V~IWD 206 (792)
+.+. . +.+|.+|++... . .+..+.+ -...+++.+.++|.+.++... +.|+-+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 4443 2 467788776543 2 2223332 345789999999998777541 2255555
Q ss_pred CCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 207 YNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 207 lrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
. .+ .......-..-+.++|+||++.++++..
T Consensus 210 ~--~~----~~~~~~~l~~pNGia~spDg~~lYvadt 240 (355)
T 3sre_A 210 P--ND----VRVVAEGFDFANGINISPDGKYVYIAEL 240 (355)
T ss_dssp T--TC----CEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred C--Ce----EEEeecCCcccCcceECCCCCEEEEEeC
Confidence 4 22 1223333455789999999998887764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=89.94 E-value=0.54 Score=55.55 Aligned_cols=114 Identities=10% Similarity=-0.024 Sum_probs=69.6
Q ss_pred CeEEEEEcCCCCEE-EEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC-CeEEEEECCCCcEEE
Q 036953 97 STIAAAFSPDGRTL-ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD-HEVRLWDANTSECIG 174 (792)
Q Consensus 97 ~V~sLafSPDG~~L-aSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D-gtVrLWDl~tg~~v~ 174 (792)
....+++.+.+..| ++-...+.|.++++........+........++++.|.++.++++-... +.|..+++.......
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 533 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 533 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE
Confidence 35578888644444 4444567899999876554444443335567899998445455443233 678877775432222
Q ss_pred Ee-ccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCC
Q 036953 175 SC-DFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNK 210 (792)
Q Consensus 175 t~-~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~ 210 (792)
.+ ..-...+.|+|++++..|+.+. .+.|..+|+...
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 22 2234567899999876666554 455999998643
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=89.09 E-value=2.4 Score=49.16 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=69.2
Q ss_pred CCEEEEEEC-CCeEEEEEC-CCCcEEEEecCCCCC-----------cEEEEEccCCCCE----EEEEeCCCeEEEEECCC
Q 036953 107 GRTLASTHG-DHTVKIIDC-QTGNCLKVLSGHRRT-----------PWVVRFHPLRSEI----LASGSLDHEVRLWDANT 169 (792)
Q Consensus 107 G~~LaSGS~-DGtVrIWDl-~tgk~v~~L~gH~~~-----------VtsVafSP~dg~l----LaSgS~DgtVrLWDl~t 169 (792)
+..++.++. ++.|.-+|. .+|+.+..+...... ...+.+.| .+.. ++.++.|+.|..+|.++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP-GDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC-CCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe-cCCcceeEEEEEcCCCEEEEEECCC
Confidence 556777777 888999999 899999888643211 12356644 2333 77788999999999999
Q ss_pred CcEEEEeccCC-----Cee-EEEEcCCCcEEEEEc------CCeEEEEECCCCCcc
Q 036953 170 SECIGSCDFYR-----PIA-SIAFHAEGELLAVAS------GHKLYIWPYNNKEEA 213 (792)
Q Consensus 170 g~~v~t~~h~s-----~V~-sVafSpdG~~LasgS------dd~V~IWDlrt~~~~ 213 (792)
|+.++...... .+. .... .++..++.++ ++.|+-+|.++++..
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred CCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 99998874322 111 1111 1444444332 456999999988753
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=87.83 E-value=27 Score=43.73 Aligned_cols=92 Identities=10% Similarity=0.140 Sum_probs=57.7
Q ss_pred eEEEEECCCCcEEEEecC-CCCCcEEEE---EccCCCCEEEEEe----------CCCeEEEEECCCCcE--EEEeccCCC
Q 036953 118 TVKIIDCQTGNCLKVLSG-HRRTPWVVR---FHPLRSEILASGS----------LDHEVRLWDANTSEC--IGSCDFYRP 181 (792)
Q Consensus 118 tVrIWDl~tgk~v~~L~g-H~~~VtsVa---fSP~dg~lLaSgS----------~DgtVrLWDl~tg~~--v~t~~h~s~ 181 (792)
.|++.|..+.+.+..+.- ....+.+++ |..+...+++.|+ ..|.|+++++..++. +.....+++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 366777777766555441 223444544 3332346888776 246799999875433 233356788
Q ss_pred eeEEEEcCCCcEEEEEcCCeEEEEECCCCC
Q 036953 182 IASIAFHAEGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 182 V~sVafSpdG~~LasgSdd~V~IWDlrt~~ 211 (792)
+++++-- +| +|+++-+.+|++|++...+
T Consensus 888 v~al~~~-~g-~Lla~ig~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASINSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEEEEE-TT-EEEEEETTEEEEEEECTTS
T ss_pred CEEEeee-CC-EEEEEcCCEEEEEECCCCc
Confidence 9888743 34 5666667889999997665
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=87.33 E-value=33 Score=36.48 Aligned_cols=143 Identities=13% Similarity=0.054 Sum_probs=76.6
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEE-eccCCCcCCCCCCeEEEEEcCC---CCEEEEEEC---
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHL-SAKYCPLVPPPRSTIAAAFSPD---GRTLASTHG--- 115 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvW-d~~t~~L~gH~~~V~sLafSPD---G~~LaSGS~--- 115 (792)
....++|.++++++.+-. ..+|+....++. ..+ +.. ...........|+|+|+ +..|+.+..
T Consensus 30 ~P~~ia~~pdG~l~V~e~--------~g~I~~~d~~G~-~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~ 98 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTER--------PGRLVLISPSGK-KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFA 98 (354)
T ss_dssp CEEEEEEEETTEEEEEET--------TTEEEEECSSCE-EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCeEEEEcCCCeEEEEeC--------CCEEEEEeCCCc-eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccC
Confidence 456778888877543321 133443334443 222 111 11122356899999997 555555443
Q ss_pred -C----CeEEEEECCCC--c---E--E-EEecC-CCCCcEEEEEccCCCCEEEEEeCC-------------CeEEEEECC
Q 036953 116 -D----HTVKIIDCQTG--N---C--L-KVLSG-HRRTPWVVRFHPLRSEILASGSLD-------------HEVRLWDAN 168 (792)
Q Consensus 116 -D----GtVrIWDl~tg--k---~--v-~~L~g-H~~~VtsVafSP~dg~lLaSgS~D-------------gtVrLWDl~ 168 (792)
+ ..|..|+.... . . + ..+.. .......+.|.| ++.++++.+.. +.|.-+|..
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d 177 (354)
T 3a9g_A 99 EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEE 177 (354)
T ss_dssp GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred CCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence 3 56777877644 1 1 1 11221 112346799999 88887775432 455555554
Q ss_pred CC---------cEEEEeccCCCeeEEEEcC-CCcEEEEEc
Q 036953 169 TS---------ECIGSCDFYRPIASIAFHA-EGELLAVAS 198 (792)
Q Consensus 169 tg---------~~v~t~~h~s~V~sVafSp-dG~~LasgS 198 (792)
.. ..+....+ .....++|+| +|+++++-.
T Consensus 178 G~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 178 GRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp SCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEEC
T ss_pred CCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEec
Confidence 32 12333333 2346899999 666665543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=87.01 E-value=51 Score=38.31 Aligned_cols=165 Identities=8% Similarity=-0.007 Sum_probs=101.1
Q ss_pred ecCCcEEEEEeCCCeEEEEeccCCCcCC----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-----CC
Q 036953 66 RDAKRGLVSWVEAESLRHLSAKYCPLVP----PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-----GH 136 (792)
Q Consensus 66 ~d~~~~L~S~s~d~sIrvWd~~t~~L~g----H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-----gH 136 (792)
.+.+..||.+..++ +..+|..+.++.. ....|.++.. .++ .|..++.+ -+..+|..+++.. .+. -.
T Consensus 70 ~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~ 144 (758)
T 3ott_A 70 IIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLP 144 (758)
T ss_dssp EETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCS
T ss_pred EcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcC
Confidence 46677899887654 6788877654432 2234777654 345 56666666 5888998766543 331 12
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-c-----cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCC
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-D-----FYRPIASIAFHAEGELLAVASGHKLYIWPYNNK 210 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~-----h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~ 210 (792)
...|.++.... ++.+.+ ++. +-+..+|..+++..... . ....|.++....++..|..+.+++|..+|..+.
T Consensus 145 ~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~ 221 (758)
T 3ott_A 145 NNTIYSIIRTK-DNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTG 221 (758)
T ss_dssp CSCEEEEEECT-TCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTT
T ss_pred CCeEEEEEEcC-CCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCC
Confidence 34688888776 666555 444 45888898776543221 1 122478888887777655565556999998765
Q ss_pred CcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 211 EEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 211 ~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
+... .... ....|.++....+|...+.+
T Consensus 222 ~~~~--~~~l-~~~~i~~i~~d~~g~lWigT 249 (758)
T 3ott_A 222 QIKQ--TEAF-HNNSIKSLALDGNGDLLAGT 249 (758)
T ss_dssp EEEE--EEEE-EEEEEEEEEECTTCCEEEEE
T ss_pred eEEe--ccCC-CCCeEEEEEEcCCCCEEEEe
Confidence 4221 1111 23458888888888855554
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=83.04 E-value=16 Score=37.49 Aligned_cols=138 Identities=14% Similarity=0.125 Sum_probs=79.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE------EEEec--CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC------LKVLS--GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~------v~~L~--gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
.+..++|+|+|...++ .+|.++-.+..+... -..+- +-.. ...+.|.| ++.+.++ .|+.|.-++-.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 5679999999997666 667766666544211 12221 2222 57789999 8887777 56999888864
Q ss_pred CCcEE------EEec--cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCccc---CCeEEe-cCCCCeEEEEEccCCC
Q 036953 169 TSECI------GSCD--FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEAS---SPIIVL-KTRRSLRAVHFHPHAA 236 (792)
Q Consensus 169 tg~~v------~t~~--h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~---~~~~~~-~h~~sVtsVafSPdG~ 236 (792)
+.... ..+. .=..+..|.|.|+|.+.++. ++.++-+......... ....+. ..-..-+-+.|.+++.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 42111 1111 11357899999999999998 7765433222111000 011111 1122234466888888
Q ss_pred eEEEE
Q 036953 237 PFVLT 241 (792)
Q Consensus 237 ~LlaS 241 (792)
.+.+.
T Consensus 195 l~~v~ 199 (236)
T 1tl2_A 195 LFGVQ 199 (236)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=81.06 E-value=12 Score=40.45 Aligned_cols=110 Identities=17% Similarity=0.260 Sum_probs=65.5
Q ss_pred EecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE--EEe-----ccCCCeeEEEEcCC---CcEEEEE----
Q 036953 132 VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI--GSC-----DFYRPIASIAFHAE---GELLAVA---- 197 (792)
Q Consensus 132 ~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v--~t~-----~h~s~V~sVafSpd---G~~Lasg---- 197 (792)
.+...-...+.++|.| ++.++++--..+.|++++..+++.. ..+ ........|+++|+ +..|++.
T Consensus 26 ~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 3433345678999999 8887777655899999987666542 222 13456889999996 3444443
Q ss_pred cCCeEEEEECCCCC----cccCCeEE---ec--CCCCeEEEEEccCCCeEEEEE
Q 036953 198 SGHKLYIWPYNNKE----EASSPIIV---LK--TRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 198 Sdd~V~IWDlrt~~----~~~~~~~~---~~--h~~sVtsVafSPdG~~LlaS~ 242 (792)
.+++|.-|.+.... .......+ .. ....-..+.|.|||..+++.+
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 24457777765421 11111111 11 122345699999997444444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 792 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-12 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.003 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.003 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-11 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 9e-11 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-08 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.002 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-10 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 9e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-04 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.002 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.5 bits (184), Expect = 3e-15
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 88 YCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP 147
+ +FS GR L + + D + D + VL+GH +
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
Query: 148 LRSEILASGSLDHEVRLWD 166
+A+GS D +++W+
Sbjct: 323 -DGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.8 bits (177), Expect = 2e-14
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWV--VRFHPLRSEILASGS 157
A F P+G A+ D T ++ D + L S + V F +L +G
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGY 289
Query: 158 LDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVASG-HKLYIW 205
D +WDA ++ G + ++ + +G +A S L IW
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.0 bits (167), Expect = 5e-13
Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 10/133 (7%)
Query: 107 GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRL-- 164
R S D + K+ D + G C + +GH + F P A+GS D RL
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFD 254
Query: 165 -WDANTSECIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKT 222
+ I S++F G LL +W + VL
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD----RAGVLAG 310
Query: 223 -RRSLRAVHFHPH 234
+ +
Sbjct: 311 HDNRVSCLGVTDD 323
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.8 bits (99), Expect = 1e-04
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 128 NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY-RPIASIA 186
+ L GH + + + S +L S S D ++ +WD+ T+ + + + + A
Sbjct: 46 RTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 187 FHAEGELLAVASGHKLYIWPYNN 209
+ G +A +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLK 127
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 11/48 (22%), Positives = 16/48 (33%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP 147
A + D R L S D + I D T N + + + P
Sbjct: 60 AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.4 bits (168), Expect = 3e-13
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD 159
F G+ + S D T+++ D + C+K L+ H + FH + + +GS+D
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVD 310
Query: 160 HEVRLWD 166
V++W+
Sbjct: 311 QTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.7 bits (161), Expect = 2e-12
Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 27/176 (15%)
Query: 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL 148
+ DG +AS D TV++ T C L HR + + P
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196
Query: 149 RS-------------------EILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFH 188
S L SGS D +++WD +T C+ + + + + FH
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256
Query: 189 AEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKT-RRSLRAVHFHPHAAPFVLTA 242
+ G+ + + L +W Y NK + L + ++ FH AP+V+T
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKR----CMKTLNAHEHFVTSLDFHKT-APYVVTG 307
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.7 bits (130), Expect = 1e-08
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 8/128 (6%)
Query: 93 PPPRSTI--------AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144
PP + + F P + S D T+K+ D +TG+ + L GH + +
Sbjct: 7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS 66
Query: 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYI 204
F + + + ++S++ G+ + AS K
Sbjct: 67 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126
Query: 205 WPYNNKEE 212
Sbjct: 127 MWEVQTGY 134
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.7 bits (117), Expect = 6e-07
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 88 YCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP 147
+ + + + P+G + S D T+K+ + QTG C+K +GHR +VR +
Sbjct: 94 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 153
Query: 148 LRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVASGH 200
++AS S D VR+W T EC +R + I++ E +++
Sbjct: 154 -DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.8 bits (161), Expect = 3e-12
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHPLRSEILASGS 157
A++ D +A +H V I + + L H V + P S + +
Sbjct: 12 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCG 70
Query: 158 LDHEVRLWDANTSECIGSCDFY 179
D +W +
Sbjct: 71 TDRNAYVWTLKGRTWKPTLVIL 92
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 9/77 (11%)
Query: 104 SPDGRTLASTHGDHTVKIIDCQ------TGNCLKVLSGHRRTPWVVRFHP---LRSEILA 154
P + + +D + + S H+ + + +
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 345
Query: 155 SGSLDHEVRLWDANTSE 171
+ +D + +WD + E
Sbjct: 346 TTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.5 bits (90), Expect = 0.001
Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 7/117 (5%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
F + +A+ H V + + G P L + +LD +
Sbjct: 250 TFITESSLVAAGHDCFPV-LFTYDSAAGKLSFGGRLDVPKQSSQRGL-TARERFQNLDKK 307
Query: 162 VRLWDANTSECIGSCDFYRPIASIAFHAEGE--LLAVASG---HKLYIWPYNNKEEA 213
+ + ++ I+ + G+ + + IW + E A
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 66.3 bits (160), Expect = 4e-12
Identities = 19/188 (10%), Positives = 46/188 (24%), Gaps = 13/188 (6%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDH 160
A + T+ + + ++D + K + P P +
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62
Query: 161 EVRLWDANTSECIGSCDF-------YRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEA 213
++ D +T + + R + S A +G+ + + + +
Sbjct: 63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122
Query: 214 SSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVA 273
+ + V P L + D S+ A Y +
Sbjct: 123 RLEVFSTADGLEAKPVRTFPMPRQVYLMR-----AADDGSLYVAGPDIYKMDVKTGKYTV 177
Query: 274 NAQSGDHV 281
+
Sbjct: 178 ALPLRNWN 185
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 52.4 bits (124), Expect = 1e-07
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 2/104 (1%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
F D + A+ + +D +TG + + G + +
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRL 274
Query: 163 RLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIW 205
+D + I + + +AF +G+ L + + L ++
Sbjct: 275 AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.0 bits (110), Expect = 5e-06
Identities = 23/201 (11%), Positives = 49/201 (24%), Gaps = 18/201 (8%)
Query: 92 VPPPRSTIAAAFSPDGRTL-ASTHGDHTVKIIDCQTGNCLKVL------SGHRRTPWVVR 144
+P A +PD RT + + ID T R+ +
Sbjct: 36 MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA 95
Query: 145 FHPLRSEILASGSLDHEVRLWDANTSECIG-----SCDFYRPIASIAFHAEGELLAVASG 199
P E+ A+ + + + +P+ + + L+ A
Sbjct: 96 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155
Query: 200 HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATS 259
LY+ + + +KT + A+ +V S +
Sbjct: 156 GSLYVAGPDIY------KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 209
Query: 260 PGYLRYPPPAVFVANAQSGDH 280
+ +
Sbjct: 210 LYTIARFKDDKQDPATADLLY 230
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.8 bits (99), Expect = 1e-04
Identities = 9/80 (11%), Positives = 23/80 (28%), Gaps = 5/80 (6%)
Query: 57 TCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGD 116
P D + ++ + + + + A + AF G L
Sbjct: 258 LRSPKDPNQIYGVLNRLAKYDLKQRKLIKA-----ANLDHTYYCVAFDKKGDKLYLGGTF 312
Query: 117 HTVKIIDCQTGNCLKVLSGH 136
+ + + + T +K +
Sbjct: 313 NDLAVFNPDTLEKVKNIKLP 332
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 8e-12
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 5/114 (4%)
Query: 58 CGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDH 117
G D SV+ + + + ++ A + + + S D
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 118 TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS-----EILASGSLDHEVRLWD 166
V D ++GN L +L GHR + V S + A+GS D + R+W
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 24/167 (14%)
Query: 58 CGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDH 117
G D +VR + + L ++ S + F+ DG+++ S D
Sbjct: 222 AGSLDRAVR-----VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 276
Query: 118 TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEI-----------LASGSLDHEVRLWD 166
+VK+ + Q N V + + + + SGS D V WD
Sbjct: 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 336
Query: 167 ANTSECIGSCDFYR-PIASIA------FHAEGELLAVASG-HKLYIW 205
+ + +R + S+A E + A SG K IW
Sbjct: 337 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (87), Expect = 0.003
Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 25/110 (22%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD 159
FS DG LA+ + T ++ G+ + LS
Sbjct: 67 CVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAA-------------------- 105
Query: 160 HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNN 209
D S I S+ F +G+ LA + +L
Sbjct: 106 ----NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE 151
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (87), Expect = 0.003
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 114 HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173
GD TV+I D +TG C V P + +A+GSLD VR+WD+ T +
Sbjct: 182 SGDRTVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 174 GSCDFYR--------PIASIAFHAEGELLAVASGHK 201
D + S+ F +G+ + S +
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 276
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.8 bits (156), Expect = 1e-11
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 11/131 (8%)
Query: 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL 148
C ++ + L S + D TVKI D +TG CL+ L G + V
Sbjct: 209 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 268
Query: 149 RSEILASGSLDHEVRLWDANTSECIGSCDFYR------PIASIAFHAEGELLAVASGH-- 200
+ + S D V+LWD T E I + + I + AV S +
Sbjct: 269 NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328
Query: 201 ---KLYIWPYN 208
KL + ++
Sbjct: 329 EETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 5e-09
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167
R + S D VK+ D +T CL L GH + ++F + + SGSLD +R+WD
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVWDV 204
Query: 168 NTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIW 205
T CI + ++ + S + L++ + + IW
Sbjct: 205 ETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 9e-09
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP 147
+ G + S D+T+K+ TG CL+ L GH W +
Sbjct: 16 DDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (120), Expect = 3e-07
Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 22/181 (12%)
Query: 81 LRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP 140
+ + C + + DG + S D ++++ D +TGNC+ L+GH+
Sbjct: 161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 220
Query: 141 WVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHA--EGELLAVAS 198
+ IL SG+ D V++WD T +C+ + S + +S
Sbjct: 221 SGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS 277
Query: 199 G-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRA 257
+ +W E R+L + V + +S++ + A
Sbjct: 278 DDGTVKLWDLKTGEFI----------RNLVTLESGGSGGV------VWRIRASNTKLVCA 321
Query: 258 T 258
Sbjct: 322 V 322
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 3e-06
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 123 DCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-P 181
KVL GH + SGS D+ +++W A T +C+ + +
Sbjct: 2 RRGELKSPKVLKGHDDHVITC-LQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 182 IASIAFH 188
+ S
Sbjct: 60 VWSSQMR 66
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 80 SLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVL-----S 134
++ P + + + ++ D TVK+ D +TG ++ L
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302
Query: 135 GHRRTPWVVRFHPLRSEILASGSLDH----EVRLWD 166
G W +R + A GS + ++ + D
Sbjct: 303 GSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLD 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.8 bits (156), Expect = 1e-11
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD 159
+ F+ G+ ST D+ + G + + + + +GS D
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGD 327
Query: 160 HEVRLWD 166
+ +++
Sbjct: 328 KKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 2e-09
Identities = 13/105 (12%), Positives = 29/105 (27%), Gaps = 3/105 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
+ P G + + + + L H ++F + S D+
Sbjct: 231 GYCPTGEW-LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNL 288
Query: 162 VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIW 205
+ W I + S + + + SG K ++
Sbjct: 289 LNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 7/95 (7%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-----GHRRTPWVVRFHPLRSEILA 154
A S R + + G VK+ D +S + P L
Sbjct: 56 AVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLI 113
Query: 155 SGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHA 189
G + +WD + + A
Sbjct: 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 62.9 bits (152), Expect = 7e-11
Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 6/137 (4%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNC-----LKVLSGHRRTPWVVRFHPLRSEILASG 156
S GR L D V +ID +K+ S R +A
Sbjct: 68 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA 127
Query: 157 SLDHEVRLWDANTSECIGSCDFYRP-IASIAFHAEGELLAVASGHKLYIWPYNNKEEASS 215
+ + D T E +H E + A+ + H + N KE
Sbjct: 128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187
Query: 216 PIIVLKTRRSLRAVHFH 232
++ +L+
Sbjct: 188 LLVDYTDLNNLKTTEIS 204
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 45.2 bits (106), Expect = 3e-05
Identities = 20/123 (16%), Positives = 28/123 (22%), Gaps = 10/123 (8%)
Query: 91 LVPPPRSTIAAAFSPDGRTL--ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL 148
V P D L + + +ID T VL + R
Sbjct: 14 HVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSA- 71
Query: 149 RSEILASGSLDHEVRLWDANTSEC-----IGSCDFYRPIA-SIAFHAEGELLAVASGHKL 202
L D +V + D E I R I S E + +
Sbjct: 72 SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPP 131
Query: 203 YIW 205
Sbjct: 132 QYV 134
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (99), Expect = 2e-04
Identities = 25/209 (11%), Positives = 56/209 (26%), Gaps = 20/209 (9%)
Query: 94 PPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH------ 146
+ + + + I+D +T K+ S T +H
Sbjct: 107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 166
Query: 147 -----PLRSEILASGSLDHEVRLWDANTSECIGSCDFY--RPIASIAFHAEGELLAVAS- 198
R E + + ++ L D + + + R + A+
Sbjct: 167 AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN 226
Query: 199 -GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHF-HPHAAPFVLTAEVNDLDSSDSSMTR 256
+KL + + + +T R +F HP P T + + ++
Sbjct: 227 ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT---SHMGDDSVALIG 283
Query: 257 ATSPGYLRYPPPAVFVANAQSGDHVSLAA 285
G+ + A G + +
Sbjct: 284 TDPEGHPDNAWKILDSFPALGGGSLFIKT 312
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 62.3 bits (150), Expect = 9e-11
Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 10/149 (6%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVL-----SGHRRTPWVVRFHPLRSEILA 154
+ S GR L D + +ID KV R +A
Sbjct: 66 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA 125
Query: 155 SGSLDHEVRLWDANTSECIGS-CDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEA 213
+ + D T E + + +H E + A+ + H+ + N KE
Sbjct: 126 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 185
Query: 214 SSPIIVLKTRRSLR----AVHFHPHAAPF 238
++ K +L +
Sbjct: 186 KVLLVNYKDIDNLTVTSIGAAPFLADGGW 214
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 53.8 bits (128), Expect = 5e-08
Identities = 23/160 (14%), Positives = 40/160 (25%), Gaps = 11/160 (6%)
Query: 91 LVPPPRSTIAAAFSPDGRTLA--STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL 148
LV P D L + + ++D + +KV+ + R
Sbjct: 14 LVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA- 71
Query: 149 RSEILASGSLDHEVRLWDANTSEC-----IGSCDFYRPIA-SIAFHAEGELLAVASGHKL 202
L D + + D E I R + S E +
Sbjct: 72 SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP 131
Query: 203 YIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242
+ E IV ++ +HP + A
Sbjct: 132 QFA-IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 170
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.8 bits (89), Expect = 0.002
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 2/109 (1%)
Query: 130 LKVLSGHRRTPWVVRFHP-LRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFH 188
KVL P L + + ++ L D ++ + + D +
Sbjct: 11 WKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMS 70
Query: 189 AEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP 237
A G L V I + + + + +K R+V
Sbjct: 71 ASGRYLLVIGRDA-RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 118
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.1 bits (141), Expect = 7e-10
Identities = 21/168 (12%), Positives = 42/168 (25%), Gaps = 19/168 (11%)
Query: 71 GLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL 130
V W + + A + A + D V +
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229
Query: 131 KVLS---------------GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175
S + F P R + L + D + W+ T + I +
Sbjct: 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKN 288
Query: 176 CDFYRPIASIAFHAEGELLAVASGH---KLYIWPYNNKEEASSPIIVL 220
+ + + +L +A+ K E +S I ++
Sbjct: 289 FAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.4 bits (134), Expect = 6e-09
Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 4/90 (4%)
Query: 94 PPRSTIAA-AFSPDGRTLASTHGDHTVKIIDCQTGNC---LKVLSGHRRTPWVVRFHPLR 149
P+ I+ P L T D ++ + L ++ F
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 150 SEILASGSLDHEVRLWDANTSECIGSCDFY 179
+ G++ E+ D S +
Sbjct: 69 DLQIYVGTVQGEILKVDLIGSPSFQALTNN 98
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 2e-08
Identities = 8/87 (9%), Positives = 24/87 (27%), Gaps = 5/87 (5%)
Query: 128 NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC----DFYRPIA 183
+++ + ++ P +L S D + ++ + + P+
Sbjct: 2 QIVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60
Query: 184 SIAFHAEGELLAVASGHKLYIWPYNNK 210
F +L + I +
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLI 87
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.8 bits (140), Expect = 7e-10
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL 158
+ +P G + +G +V + + ++ + H V + P ASG +
Sbjct: 21 VVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDV 78
Query: 159 DHEVRLWDANTSEC 172
VR+WD +
Sbjct: 79 HGNVRIWDTTQTTH 92
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.0 bits (138), Expect = 1e-09
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 88 YCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP-WVVRFH 146
V S +SPDG +AS D T+KI + T K + R +
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290
Query: 147 PLRSEILASGSLDHEVRLWD 166
+ L S S + + +
Sbjct: 291 W-TKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.0 bits (99), Expect = 9e-05
Identities = 9/85 (10%), Positives = 22/85 (25%), Gaps = 3/85 (3%)
Query: 124 CQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIA 183
+ + +AS S D +++W+ T + + I
Sbjct: 224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 283
Query: 184 S--IAFHAEGELLAVASGHK-LYIW 205
+ + L S + +
Sbjct: 284 DQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.5 bits (139), Expect = 8e-10
Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 3/115 (2%)
Query: 127 GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY--RPIAS 184
G+ +V GH + + + L S + + WD +T I
Sbjct: 2 GSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 185 IAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239
I ++G+L V+ L + P SS + K + V
Sbjct: 61 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV 115
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.5 bits (121), Expect = 2e-07
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSL 158
A + S DG+TL S + + D TG +V H ++ L + S
Sbjct: 17 ALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS--KGDLFTVSW 74
Query: 159 DHEVRLWDANTSECIGSCDFYRPIAS 184
D +++ A S S ++S
Sbjct: 75 DDHLKVVPAGGSGVDSSKAVANKLSS 100
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 2e-05
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 105 PDGRTLASTHGDHTVKIIDCQTGNCLKVL---SGHRRTPWVVRFHPLRSEILASGSLDHE 161
PD LA+ D++V + + + ++ + + V + + S D
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSN 291
Query: 162 VRLWD 166
++ W+
Sbjct: 292 IKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.4 bits (87), Expect = 0.002
Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 4/98 (4%)
Query: 112 STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE 171
+ + LA+GSLD+ V +W+ N
Sbjct: 198 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 257
Query: 172 C----IGSCDFYRPIASIAFHAEGELLAVASGHKLYIW 205
I + S+ + E +++ + W
Sbjct: 258 DHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.6 bits (137), Expect = 2e-09
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILAS 155
+++ + + + D +++ D L LSGH W +++ IL S
Sbjct: 12 MTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVS 69
Query: 156 GSLDHEVRLWDANTSECIGSCDFY 179
GS D VR+WD C + +
Sbjct: 70 GSTDRTVRVWDIKKGCCTHVFEGH 93
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.7 bits (127), Expect = 4e-08
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 101 AAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV-LSGHRRTPWVVRFHPLRSEILASGSLD 159
F L S ++ I + ++G + + W V F ++A+ D
Sbjct: 288 TTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKD 344
Query: 160 HEVRLWD 166
+ L
Sbjct: 345 GQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 6e-06
Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 114 HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173
I + + S H + + IL SGS +++ +++ + + +
Sbjct: 258 SAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 316
Query: 174 GS--CDFYRPIASIAFHAEGELLAVASGHKLYIW 205
+ I S+ F + + AV + ++
Sbjct: 317 HANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 350
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.2 bits (136), Expect = 2e-09
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 105 PDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWV--VRFHPLRSEILASGSLDHEV 162
D + A+ D T+++ D T C++ + ++ V + + S SLD +
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320
Query: 163 RLWD 166
++
Sbjct: 321 NFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.2 bits (128), Expect = 2e-08
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 15/123 (12%)
Query: 84 LSAKYCPLVPPPRSTIAA-AFSPDGRTLASTHGDHT-VKIID--CQTGNCLKVLSGHRRT 139
L P R+ ++ P +A G V+ +D + +GH +
Sbjct: 5 LKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSS 64
Query: 140 P-WVVRFHPLRS-EILASGSLDHEVRLWDANTSECIGSCDFYR---------PIASIAFH 188
V+F P++ + L SG +V +W + S + PI+ I++
Sbjct: 65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 124
Query: 189 AEG 191
EG
Sbjct: 125 FEG 127
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.2 bits (97), Expect = 2e-04
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 136 HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF-----YRPIASIAFHAE 190
+ L S+ A+ D +R+WD TS+C+ +
Sbjct: 249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 308
Query: 191 GELLAVASGHKLYIW 205
G +++++ L +
Sbjct: 309 GRIISLSLDGTLNFY 323
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (135), Expect = 3e-09
Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 9/136 (6%)
Query: 105 PDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRL 164
D + + S GD T+K+ + T ++ L+GH + R ++ SGS D+ +RL
Sbjct: 146 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH---KRGIACLQYRDRLVVSGSSDNTIRL 202
Query: 165 WDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRR 224
WD C+ + + + +++ A K+ +W + +P L R
Sbjct: 203 WDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT 262
Query: 225 ------SLRAVHFHPH 234
+ + F
Sbjct: 263 LVEHSGRVFRLQFDEF 278
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 3e-08
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
R + S D+T+++ D + G CL+VL GH +RF R + SG+ D ++
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKI 240
Query: 163 RLWDANTSECIGSCDFYRPIASIAFHAE--------GELLAVASG-HKLYIW 205
++WD + + + ++ H+ + +S + IW
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (121), Expect = 2e-07
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 12/67 (17%)
Query: 109 TLASTHGDHTVKIIDCQTGN---------CLKVLSGHRRTPWVVRFHPLRSEILASGSLD 159
+ S D +K+ D CL+ L H + ++F + + S S D
Sbjct: 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ---IVSSSHD 286
Query: 160 HEVRLWD 166
+ +WD
Sbjct: 287 DTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 5e-07
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP 147
D + + S D+T+KI D T C ++L+GH + +++
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (101), Expect = 4e-05
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 115 GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174
G H+++ I C+ S + + +++ + + SG D+ +++WD NT EC
Sbjct: 1 GRHSLQRIHCR--------SETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKR 49
Query: 175 S 175
Sbjct: 50 I 50
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.7 bits (124), Expect = 6e-08
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 88 YCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT-GNCLKVLSGHRRTPWVVRFH 146
+ P A + +A+ D + I + +K L+ H+ + +
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267
Query: 147 PLRSEILASGSLDHEVRLWD 166
L S D ++ W+
Sbjct: 268 T--PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.5 bits (121), Expect = 1e-07
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 9/109 (8%)
Query: 126 TGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASI 185
LK +SGH + + +PL SGS D + W +++ D I S+
Sbjct: 2 HDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSSS----MHQDHSNLIVSL 52
Query: 186 AFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPH 234
E +++ L + E S P + AV +
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDD 101
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 9e-04
Identities = 10/92 (10%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 116 DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIG 174
VK + + +++A+GSLD + ++ + I
Sbjct: 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252
Query: 175 SCDFYR-PIASIAFHAEGELLAVASGHKLYIW 205
+ + ++ + ++ + L++ + + W
Sbjct: 253 ALNAHKDGVNNLLWETPSTLVSSGADACIKRW 284
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 11/109 (10%), Positives = 28/109 (25%), Gaps = 5/109 (4%)
Query: 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV-LSGHRRTPWVVRFHPLRSEILASGS 157
D T + +D +TG + + +P ++
Sbjct: 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA---FG 257
Query: 158 LDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIW 205
+ + +D + I S+ +G + + L +
Sbjct: 258 AYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.0 bits (120), Expect = 2e-07
Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 8/110 (7%)
Query: 110 LASTHGDHTVKIIDCQTGNCLKVL--SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167
+ + + +ID + KV+ + TP V P A+ + + D
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 168 NTSECIGSCDFYRP------IASIAFHAEGELLAVASGHKLYIWPYNNKE 211
T E +G D P + A +G+ LA+ + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS 150
+ + A +P + ++ D + +K + + + V
Sbjct: 236 VRIMDVFYFSTAVNPAKTRAF--GAYNVLESFDLEKNASIKRV-PLPHSYYSVNVST-DG 291
Query: 151 EILASGSLDHEVRLWDANTSECIGS 175
+ G ++ +DA T E G
Sbjct: 292 STVWLGGALGDLAAYDAETLEKKGQ 316
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (110), Expect = 5e-06
Identities = 29/216 (13%), Positives = 57/216 (26%), Gaps = 23/216 (10%)
Query: 87 KYCPLVPPPRSTIAAAFSPDGRTL-ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145
K + + + +P GR A+ + ++ ID TG L + V
Sbjct: 25 KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL 84
Query: 146 HPL----------------RSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHA 189
R E+ V L+DA T + + R I +A+
Sbjct: 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR 144
Query: 190 EGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDS 249
+G L + P + + P E + + +
Sbjct: 145 DGSKLYGLGRDLHVMDPEAGTLVE-----DKPIQSWEAETYAQPDVLAVWNQHESSGVMA 199
Query: 250 SDSSMTRA-TSPGYLRYPPPAVFVANAQSGDHVSLA 284
+ R P + + ++G+
Sbjct: 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (103), Expect = 3e-05
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 87 KYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVL----SGHRRTPWV 142
VP P S + S DG T+ + D +T + + V
Sbjct: 271 ASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330
Query: 143 VRF 145
F
Sbjct: 331 RLF 333
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 49.9 bits (117), Expect = 5e-07
Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 115 GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174
+ +ID + + P P +++ + + ++V + D T+ I
Sbjct: 10 ESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA 68
Query: 175 SCDFY 179
+
Sbjct: 69 TVPAG 73
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 44.5 bits (103), Expect = 3e-05
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 112 STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE 171
+TV +ID T + P + P ++ + S + V + D T+
Sbjct: 219 VDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277
Query: 172 CIGS 175
+
Sbjct: 278 ITAT 281
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 92 VPPPRSTIAAAFSPDGRTL-ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141
+P A +PDG+ + + +TV +ID T ++ + P+
Sbjct: 240 IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKN-PY 289
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 7e-07
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 12/84 (14%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNC------------LKVLSGHRRTPWVVRFHPLR 149
+ S S GD +K+ D + + K H +
Sbjct: 19 SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78
Query: 150 SEILASGSLDHEVRLWDANTSECI 173
++A+ S ++ + +
Sbjct: 79 LCLVATTSFSGDLLFYRITREDET 102
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 4e-05
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH----RRTPWVVRFHPLRSEILASGS 157
+F+ G TL S D ++ D +T + L+ H ++ + LA
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE-HGDSLAEPG 354
Query: 158 LDHEVRLWDANTSECIGSCDFYRPIASIAF 187
+ V+ +G+ D + +
Sbjct: 355 VFD-VKFLKKGWRSGMGA-DLNESLCCVCL 382
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 8e-04
Identities = 20/220 (9%), Positives = 51/220 (23%), Gaps = 37/220 (16%)
Query: 50 VDASKLKTCGPSDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDG 107
S +C D ++ D K + +S H K I + +
Sbjct: 22 ACNSFTVSCS-GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIER-DAFEL 79
Query: 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP----------WVVRFHP----LRSEIL 153
+A+T + + K + + W +++ L S L
Sbjct: 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 139
Query: 154 ASGSLDHEVRLWDANTSECIGSCDFY-------------------RPIASIAFHAEGELL 194
+ + +W + + + S+ G +
Sbjct: 140 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIA 199
Query: 195 AVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPH 234
+ + I + + + ++
Sbjct: 200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.4 bits (116), Expect = 8e-07
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 2/82 (2%)
Query: 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL-RSEIL 153
V ++D +TG L + + +
Sbjct: 258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLY 316
Query: 154 ASGSLDHEVRLWDANTSECIGS 175
A + D + + DA + E + S
Sbjct: 317 ALSTGDKTLYIHDAESGEELRS 338
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 22/155 (14%), Positives = 39/155 (25%), Gaps = 16/155 (10%)
Query: 98 TIAAAFSPDGRTL-----ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEI 152
I A +PD R + A +ID + G + ++ G S I
Sbjct: 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFI 61
Query: 153 LA---------SGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLY 203
G V ++D T + + G L
Sbjct: 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL 121
Query: 204 IWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPF 238
+ ++ + K + + V H P
Sbjct: 122 FYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT 156
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.9 bits (112), Expect = 2e-06
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 92 VPPPRSTIAAAFSPDGRTL--ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP 147
+ S D + L A + GD T+ I D ++G L+ ++ P V+
Sbjct: 296 FEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 29/205 (14%), Positives = 50/205 (24%), Gaps = 26/205 (12%)
Query: 27 NVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRG--LVSWVEAESLRHL 84
S A + + K + V D+ + G E +
Sbjct: 124 QFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 183
Query: 85 SAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC--LKVLSGHRRTPWV 142
+ A+S L + ID +G+ L +
Sbjct: 184 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 243
Query: 143 VRFHPLRSEILA-------------------SGSLDHEVRLWDANTSECIGSCDFYRPIA 183
+ P + +A + V + DA T E + + I
Sbjct: 244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEID 303
Query: 184 SIAFHAEGELLAVASG---HKLYIW 205
SI + + L A LYI
Sbjct: 304 SINVSQDEKPLLYALSTGDKTLYIH 328
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 4e-04
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 26/130 (20%)
Query: 102 AFSPDGRTLAST----------HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP---- 147
+ DG +A V++ D T + ++V +P
Sbjct: 53 VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 112
Query: 148 ----LRSEILASGSLDHEVRLWDANTSECIGSCD--------FYRPIASIAFHAEGELLA 195
++ + S V + D D P +G L
Sbjct: 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK 172
Query: 196 VASGHKLYIW 205
VA G +
Sbjct: 173 VAFGTEGTPE 182
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 7/82 (8%), Positives = 21/82 (25%), Gaps = 6/82 (7%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
+ D +T ++ + +R + + D +
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSA-DRKTVMVRKDDGK 337
Query: 162 VRLWDANTSECIGSCDF-YRPI 182
+ + E + + RP+
Sbjct: 338 IYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 43.3 bits (100), Expect = 7e-05
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRT 139
S D +T+ D + + + + +R
Sbjct: 319 DLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 17/147 (11%), Positives = 36/147 (24%), Gaps = 21/147 (14%)
Query: 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLR 149
S+ AA + G + + I + G+ F
Sbjct: 206 CTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265
Query: 150 SEILA------------------SGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEG 191
+++A + A+ + G +I +G
Sbjct: 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDG 325
Query: 192 ELLAVASG---HKLYIWPYNNKEEASS 215
A+ L I+ + ++ SS
Sbjct: 326 ASDNYANSAGTEVLDIYDAASDQDQSS 352
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 21/185 (11%), Positives = 40/185 (21%), Gaps = 19/185 (10%)
Query: 92 VPPPRSTIAAAFSPDGRTL-----ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH 146
S+ R A G + G L G +
Sbjct: 16 AASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA--FLSLAVAG 73
Query: 147 PLRSEI---------LASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVA 197
S+ A G V ++D T I + + A
Sbjct: 74 HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA 133
Query: 198 SGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRA 257
S L + +++ + + + A + L S +S+ +
Sbjct: 134 SSACLLFF---LFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAAS 190
Query: 258 TSPGY 262
Sbjct: 191 DLAAA 195
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 0.002
Identities = 7/104 (6%), Positives = 27/104 (25%), Gaps = 6/104 (5%)
Query: 112 STHGDHTVKIIDCQTGNCLKVLS--GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169
++ + + + L + + P + + + V +
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 170 SECIGSCDFYRPI----ASIAFHAEGELLAVASGHKLYIWPYNN 209
+ + + I+ +G+ + V S + +
Sbjct: 69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 112
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 792 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.93 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.92 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.92 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.92 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.91 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.91 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.91 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.89 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.89 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.88 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.88 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.85 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.85 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.84 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.82 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.81 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.8 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.79 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.79 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.78 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.78 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.76 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.74 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.74 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.74 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.72 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.71 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.7 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.69 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.68 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.68 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.66 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.63 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.54 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.49 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.48 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.48 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.4 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.3 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.28 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.26 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.22 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.06 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.05 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.84 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.83 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.72 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.61 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.56 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.46 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.45 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.25 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.19 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.13 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.12 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.97 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.82 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.75 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.72 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.68 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.59 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.43 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.4 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.31 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.18 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.16 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.1 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.7 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.69 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.95 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 94.68 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 93.78 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 92.23 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 90.56 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.42 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.31 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.2 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 87.97 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 87.94 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 87.01 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 85.89 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 85.82 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 85.74 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 85.23 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 85.08 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 84.83 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 84.69 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 83.23 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 82.55 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 82.31 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 82.1 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 81.91 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.4e-25 Score=231.40 Aligned_cols=250 Identities=18% Similarity=0.199 Sum_probs=206.6
Q ss_pred CCceEeeecccceeeC--------CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-----
Q 036953 23 RRARNVSRLLAHREIS--------PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----- 89 (792)
Q Consensus 23 s~~r~V~~l~~~rels--------~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----- 89 (792)
.+.++||++....... .++..+.+++|+|++++ |++++.|+.|++|+....
T Consensus 71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~----------------l~s~~~dg~i~iwd~~~~~~~~~ 134 (337)
T d1gxra_ 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT----------------LIVGGEASTLSIWDLAAPTPRIK 134 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE----------------EEEEESSSEEEEEECCCC--EEE
T ss_pred CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCE----------------EEEeecccccccccccccccccc
Confidence 3568889875443222 23456778888887654 455578888999987533
Q ss_pred -CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 90 -PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 90 -~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
.+..|...+.+++|+|++..+++++.|+.|++||+.++++...+.+|...|++++|++ ++..+++++.|+.|++||++
T Consensus 135 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~ 213 (337)
T d1gxra_ 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence 3567899999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred CCcEEEEeccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 169 TSECIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 169 tg~~v~t~~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
+++.+..+.+...|.+++|+|++++|++++. +.|++||++..+. .....|...|++++|+|++++|++++.+.
T Consensus 214 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg-- 287 (337)
T d1gxra_ 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK----YQLHLHESCVLSLKFAYCGKWFVSTGKDN-- 287 (337)
T ss_dssp TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE----EEECCCSSCEEEEEECTTSSEEEEEETTS--
T ss_pred cceeecccccccceEEEEEcccccccceecccccccccccccccc----ccccccccccceEEECCCCCEEEEEeCCC--
Confidence 9999999999999999999999999999885 4599999988764 34567889999999999999777666443
Q ss_pred ccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccccc
Q 036953 248 DSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPS 327 (792)
Q Consensus 248 rs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s 327 (792)
.+.+|...++..+.... |...|++++|+|||++|+
T Consensus 288 ---------------------~i~iwd~~~~~~~~~~~-------~~~~v~~~~~s~d~~~l~----------------- 322 (337)
T d1gxra_ 288 ---------------------LLNAWRTPYGASIFQSK-------ESSSVLSCDISVDDKYIV----------------- 322 (337)
T ss_dssp ---------------------EEEEEETTTCCEEEEEE-------CSSCEEEEEECTTSCEEE-----------------
T ss_pred ---------------------eEEEEECCCCCEEEEcc-------CCCCEEEEEEeCCCCEEE-----------------
Confidence 24455555555544432 778999999999999999
Q ss_pred ccccccCCCCCccccccccccc
Q 036953 328 ASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 328 ~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
+++.|++|.-||+
T Consensus 323 ---------t~s~D~~I~vWdl 335 (337)
T d1gxra_ 323 ---------TGSGDKKATVYEV 335 (337)
T ss_dssp ---------EEETTSCEEEEEE
T ss_pred ---------EEeCCCeEEEEEE
Confidence 7889999999985
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=7.8e-24 Score=214.65 Aligned_cols=245 Identities=16% Similarity=0.204 Sum_probs=193.5
Q ss_pred cccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCC
Q 036953 31 LLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPD 106 (792)
Q Consensus 31 l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPD 106 (792)
+..+|.+..+...|.+++|+|++.++ ++++.|++|++||..++ .+..|...|.+++|+|+
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l----------------~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~ 108 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLL----------------VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEE----------------EEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTT
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEE----------------EEEECCCceeeeecccceeEEEEecccccEEeeEeecc
Confidence 34456778888999999999997654 55578899999998866 35689999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCc----EEEEe-----------------------------------------cCCCCCcE
Q 036953 107 GRTLASTHGDHTVKIIDCQTGN----CLKVL-----------------------------------------SGHRRTPW 141 (792)
Q Consensus 107 G~~LaSGS~DGtVrIWDl~tgk----~v~~L-----------------------------------------~gH~~~Vt 141 (792)
++++++|+.|+.+++|+..... ....+ ..+...+.
T Consensus 109 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (340)
T d1tbga_ 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE
T ss_pred ceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEe
Confidence 9999999999999999975321 11111 13445566
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEE
Q 036953 142 VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIV 219 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~ 219 (792)
...+.+ ...++++++.|+.|++||+++++++..+. |...|.+++|+|++++|++++. +.|++||++..+... ....
T Consensus 189 ~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~-~~~~ 266 (340)
T d1tbga_ 189 SLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-TYSH 266 (340)
T ss_dssp EEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECC
T ss_pred eecccc-ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccc-cccc
Confidence 777777 78899999999999999999999998884 8899999999999999999985 559999998876432 1112
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEE
Q 036953 220 LKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVP 299 (792)
Q Consensus 220 ~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~Vwd 299 (792)
..+...|++++|+|++++|++++.+.. +.+|+..++..+.. +.+|...|++
T Consensus 267 ~~~~~~i~~~~~s~~~~~l~~g~~dg~-----------------------i~iwd~~~~~~~~~------~~~H~~~V~~ 317 (340)
T d1tbga_ 267 DNIICGITSVSFSKSGRLLLAGYDDFN-----------------------CNVWDALKADRAGV------LAGHDNRVSC 317 (340)
T ss_dssp TTCCSCEEEEEECSSSCEEEEEETTSC-----------------------EEEEETTTCCEEEE------ECCCSSCEEE
T ss_pred ccccCceEEEEECCCCCEEEEEECCCE-----------------------EEEEECCCCcEEEE------EcCCCCCEEE
Confidence 345678999999999997777665443 44555555555443 3458999999
Q ss_pred eEECCCCcEEEEccccccCCCCccccccccccccCCCCCcccccccccc
Q 036953 300 SVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSME 348 (792)
Q Consensus 300 V~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~ 348 (792)
++|+|||++|+ +++.|++|.-|+
T Consensus 318 l~~s~d~~~l~--------------------------s~s~Dg~v~iWd 340 (340)
T d1tbga_ 318 LGVTDDGMAVA--------------------------TGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSCEE--------------------------EEETTSCEEEEC
T ss_pred EEEeCCCCEEE--------------------------EEccCCEEEEeC
Confidence 99999999999 788899988885
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.3e-23 Score=217.43 Aligned_cols=236 Identities=12% Similarity=0.108 Sum_probs=192.0
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---------CcCCCCCCeEEEEEcCCCCEE
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---------PLVPPPRSTIAAAFSPDGRTL 110 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---------~L~gH~~~V~sLafSPDG~~L 110 (792)
+...|.+++|+++++++++| + |+.|++||.... ...+|.+.|.+++|+||+++|
T Consensus 50 H~~~V~~v~fs~~g~~latg----------------~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l 112 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTG----------------G-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL 112 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEE----------------C-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEE
T ss_pred CCCcEEEEEECCCCCEEEEE----------------E-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEE
Confidence 45678888888887765544 3 567888887543 135789999999999999999
Q ss_pred EEEECCCeEEEEECCCC--cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEE
Q 036953 111 ASTHGDHTVKIIDCQTG--NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAF 187 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tg--k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVaf 187 (792)
++|+.|+.|++||+... +....+..|...|..+.|+| ++.++++++.|+.|++||++++++.... .+...+.+++|
T Consensus 113 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~ 191 (337)
T d1gxra_ 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191 (337)
T ss_dssp EEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEeeccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999998744 45677889999999999999 9999999999999999999999888776 47889999999
Q ss_pred cCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCC
Q 036953 188 HAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYP 266 (792)
Q Consensus 188 SpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p 266 (792)
+++++.+++++ ++.|++||+++.+.. ....+...|++++|+|+++.+++++.+..
T Consensus 192 s~~~~~~~~~~~d~~v~i~d~~~~~~~----~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-------------------- 247 (337)
T d1gxra_ 192 SNDGTKLWTGGLDNTVRSWDLREGRQL----QQHDFTSQIFSLGYCPTGEWLAVGMESSN-------------------- 247 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEECTTSSEEEEEETTSC--------------------
T ss_pred cccccccccccccccccccccccceee----cccccccceEEEEEcccccccceeccccc--------------------
Confidence 99999999988 566999999887743 35668899999999999998776664432
Q ss_pred CCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCcccccccc
Q 036953 267 PPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPS 346 (792)
Q Consensus 267 ~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p 346 (792)
+.+|....+..... ..|...|..++|+|||++|+ +++.|++|.-
T Consensus 248 ---i~i~d~~~~~~~~~-------~~~~~~i~~v~~s~~g~~l~--------------------------s~s~Dg~i~i 291 (337)
T d1gxra_ 248 ---VEVLHVNKPDKYQL-------HLHESCVLSLKFAYCGKWFV--------------------------STGKDNLLNA 291 (337)
T ss_dssp ---EEEEETTSSCEEEE-------CCCSSCEEEEEECTTSSEEE--------------------------EEETTSEEEE
T ss_pred ---cccccccccccccc-------cccccccceEEECCCCCEEE--------------------------EEeCCCeEEE
Confidence 33444444444322 23888999999999999999 7888999999
Q ss_pred ccccCCC
Q 036953 347 METFPVI 353 (792)
Q Consensus 347 ~~~~~~~ 353 (792)
|+...++
T Consensus 292 wd~~~~~ 298 (337)
T d1gxra_ 292 WRTPYGA 298 (337)
T ss_dssp EETTTCC
T ss_pred EECCCCC
Confidence 9876653
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.92 E-value=1.2e-23 Score=219.86 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=179.1
Q ss_pred CCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE--EEEecCCCCCcEEEEEccCCC
Q 036953 77 EAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC--LKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 77 ~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~--v~~L~gH~~~VtsVafSP~dg 150 (792)
.++.+.+|+.... .+.+|...|++++|+|+|++|++|+.||+|+|||+.+++. ...+.+|.+.|.+++|+| ++
T Consensus 36 ~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~ 114 (311)
T d1nr0a1 36 NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ES 114 (311)
T ss_dssp ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TS
T ss_pred eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccc-cc
Confidence 3556788887654 3578999999999999999999999999999999988764 356789999999999999 88
Q ss_pred CEEEEEeC--CCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcE-EEEEcC-CeEEEEECCCCCcccCCeEEecCCCC
Q 036953 151 EILASGSL--DHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGEL-LAVASG-HKLYIWPYNNKEEASSPIIVLKTRRS 225 (792)
Q Consensus 151 ~lLaSgS~--DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~-LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~s 225 (792)
++|++++. ++.+++||+++++....+ .|...|.+++|+|++++ |+++++ +.|++||+++.+.. .....|...
T Consensus 115 ~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~---~~~~~~~~~ 191 (311)
T d1nr0a1 115 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK---STFGEHTKF 191 (311)
T ss_dssp CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE---EEECCCSSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccc---ccccccccc
Confidence 99999986 456999999999888777 47889999999999985 677774 55999999987643 345568899
Q ss_pred eEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEee-ccCcccCCCceEEEeEECC
Q 036953 226 LRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAA-ELPLMSSLPFLIVPSVSID 304 (792)
Q Consensus 226 VtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s-~l~~l~gh~~~VwdV~~Sp 304 (792)
|+++.|+|+++.+++++.+..+ .+|...++....... ......+|...|.+++|+|
T Consensus 192 i~~v~~~p~~~~l~~~~~d~~v-----------------------~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~ 248 (311)
T d1nr0a1 192 VHSVRYNPDGSLFASTGGDGTI-----------------------VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 248 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSCE-----------------------EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred ccccccCccccccccccccccc-----------------------cccccccccccccccccccccccccccccccccCC
Confidence 9999999999987776655433 344444444433332 2234456899999999999
Q ss_pred CCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 305 DSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 305 DGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+|++|+ +|+.|++|.-||...+
T Consensus 249 ~~~~l~--------------------------tgs~Dg~v~iwd~~t~ 270 (311)
T d1nr0a1 249 DGTKIA--------------------------SASADKTIKIWNVATL 270 (311)
T ss_dssp TSSEEE--------------------------EEETTSEEEEEETTTT
T ss_pred CCCEEE--------------------------EEeCCCeEEEEECCCC
Confidence 999999 8899999999997665
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=8.9e-23 Score=202.57 Aligned_cols=267 Identities=16% Similarity=0.241 Sum_probs=204.5
Q ss_pred eeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEE
Q 036953 36 EISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLA 111 (792)
Q Consensus 36 els~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~La 111 (792)
.+..+...|++++|+|+++++ ++++.|++|++|+..++ .+.+|...|.+++|++++..++
T Consensus 12 ~L~GH~~~I~~l~~sp~~~~l----------------~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~ 75 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFSVM----------------VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75 (317)
T ss_dssp EEECCSSCEEEEEECSSSSEE----------------EEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEcCCCCCeEEEEEcCCCCEE----------------EEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccc
Confidence 455677889999999987644 55578999999998866 3578999999999999999999
Q ss_pred EEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCC
Q 036953 112 STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAE 190 (792)
Q Consensus 112 SGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpd 190 (792)
++..++.+.+|+....+....+.+|...+.++.|++ +++.+++++.|+.+++||+++++.+..+. +...+.+++|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (317)
T d1vyhc1 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 154 (317)
T ss_dssp EEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred ccccccccccccccccccccccccccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccC
Confidence 999999999999999998888999999999999999 89999999999999999999999888874 7889999999999
Q ss_pred CcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe--------------------EEEEEeeCcccc
Q 036953 191 GELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP--------------------FVLTAEVNDLDS 249 (792)
Q Consensus 191 G~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~--------------------LlaS~s~~dLrs 249 (792)
+++|++++. +.|++|++++.+... ....+...+.++.|+|++.. +++++.+..++.
T Consensus 155 ~~~l~~~~~d~~v~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 231 (317)
T d1vyhc1 155 GTLIASCSNDQTVRVWVVATKECKA---ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231 (317)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred CCEEEEEeCCCeEEEEeeccceeeE---EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEE
Confidence 999999984 559999998877432 45567888999999887542 333333333332
Q ss_pred C-----CCceeeecCCC---cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEEEccccc
Q 036953 250 S-----DSSMTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRR 316 (792)
Q Consensus 250 ~-----d~~~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~ 316 (792)
+ .....+....+ ...+.+....++.+..+..+.++. .+..+.+|...|.+++|+|||++|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~------ 305 (317)
T d1vyhc1 232 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV------ 305 (317)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE------
T ss_pred EECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE------
Confidence 2 22222322222 123333333444444444444443 2234567888999999999999888
Q ss_pred cCCCCccccccccccccCCCCCcccccccccc
Q 036953 317 ASSSNMQIEPSASLHLQSDSNVEQDGTVPSME 348 (792)
Q Consensus 317 ~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~ 348 (792)
+++.|++|.-||
T Consensus 306 --------------------s~s~Dg~i~iWd 317 (317)
T d1vyhc1 306 --------------------TGSVDQTVKVWE 317 (317)
T ss_dssp --------------------EEETTSEEEEEC
T ss_pred --------------------EEeCCCeEEEeC
Confidence 788888888876
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.91 E-value=3.5e-23 Score=216.37 Aligned_cols=204 Identities=11% Similarity=0.136 Sum_probs=165.4
Q ss_pred ceEeeecccc---eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCC
Q 036953 25 ARNVSRLLAH---REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPP 95 (792)
Q Consensus 25 ~r~V~~l~~~---rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~ 95 (792)
...+|+.... +.+..+...+.+++|+|++++++ +++.|++|++|+.... .+.+|.
T Consensus 39 ~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~la----------------tg~~dg~i~iwd~~~~~~~~~~~~~~~~ 102 (311)
T d1nr0a1 39 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA----------------SGDVHGNVRIWDTTQTTHILKTTIPVFS 102 (311)
T ss_dssp EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEE----------------EEETTSEEEEEESSSTTCCEEEEEECSS
T ss_pred EEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEe----------------ccccCceEeeeeeecccccccccccccc
Confidence 3567766443 33345677899999999877554 4477889999988654 256899
Q ss_pred CCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC-EEEEEeCCCeEEEEECCCCcE
Q 036953 96 RSTIAAAFSPDGRTLASTHG--DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE-ILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~--DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~-lLaSgS~DgtVrLWDl~tg~~ 172 (792)
..|.+++|+|++++|++++. +..++||++++++....+.+|...|++++|+| +++ .|++|+.|++|++||+++++.
T Consensus 103 ~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~~~ 181 (311)
T d1nr0a1 103 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKF 181 (311)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEE
T ss_pred Cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cceeeeccccccccccccccccccc
Confidence 99999999999999999986 45699999999999999999999999999999 555 688999999999999999998
Q ss_pred EEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccC----CeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 173 IGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASS----PIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 173 v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~----~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
...+ .|...|.++.|+|++++|++++ ++.|++||++..+.... ......|...|++++|+|++++|++++.+.
T Consensus 182 ~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg 260 (311)
T d1nr0a1 182 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260 (311)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCC
Confidence 8887 4789999999999999999998 45599999987764321 112234778999999999999877766544
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.3e-22 Score=211.87 Aligned_cols=293 Identities=15% Similarity=0.190 Sum_probs=202.1
Q ss_pred CceEeeecccceeeC-------CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC--------
Q 036953 24 RARNVSRLLAHREIS-------PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY-------- 88 (792)
Q Consensus 24 ~~r~V~~l~~~rels-------~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t-------- 88 (792)
....+|+....+.+. .++..|++++|+++++++++|. |+..++|.......+..+....
T Consensus 38 ~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~------d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T d1erja_ 38 DYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC------NKTTQVYRVSDGSLVARLSDDSAANKDPEN 111 (388)
T ss_dssp SCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC------BSCEEEEETTTCCEEEEECC----------
T ss_pred CcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe------CCeEEEEEecccceEeeecccccccccccc
Confidence 445566654433322 3567899999999998887762 3444555544444443332211
Q ss_pred ---CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEE
Q 036953 89 ---CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLW 165 (792)
Q Consensus 89 ---~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLW 165 (792)
.....|...|++++|+|++++|++|+.||.|++||...++.+..+.+|...|.++.|++ ++..+++++.++.+++|
T Consensus 112 ~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~ 190 (388)
T d1erja_ 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIW 190 (388)
T ss_dssp -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred cccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccc-ccccccccccceeeeee
Confidence 12346788899999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred ECCCCcEEEEeccCCCeeEEEEcC-CCcEEEEEc-CCeEEEEECCCCCcccC----CeEEecCCCCeEEEEEccCCCeEE
Q 036953 166 DANTSECIGSCDFYRPIASIAFHA-EGELLAVAS-GHKLYIWPYNNKEEASS----PIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 166 Dl~tg~~v~t~~h~s~V~sVafSp-dG~~LasgS-dd~V~IWDlrt~~~~~~----~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
|.++........+......+.+++ ++++|++++ ++.|++||.++...... ......|...|++++|+|+++.|+
T Consensus 191 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 270 (388)
T d1erja_ 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270 (388)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred eccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEE
Confidence 999998888887777777777765 778999988 45599999988764321 112234778999999999999888
Q ss_pred EEEeeCccccCCCc-----eee------------ecCCC---cccCCCCceEEEEecCCCEEEEee-----ccCcccCCC
Q 036953 240 LTAEVNDLDSSDSS-----MTR------------ATSPG---YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLP 294 (792)
Q Consensus 240 aS~s~~dLrs~d~~-----~~l------------~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~ 294 (792)
+++.+..++.++.. ... ..... ...+.+...+++.+..+..+.++. ....+++|.
T Consensus 271 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~ 350 (388)
T d1erja_ 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR 350 (388)
T ss_dssp EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCC
Confidence 77765544433321 100 00000 122222333344444444444433 112455677
Q ss_pred ceEEEeEE------CCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccc
Q 036953 295 FLIVPSVS------IDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 295 ~~VwdV~~------SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
..|.++++ +|||++|+ +++.|++|.-|+.
T Consensus 351 ~~V~~~~~~~~~~~spd~~~l~--------------------------s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 351 NSVISVAVANGSSLGPEYNVFA--------------------------TGSGDCKARIWKY 385 (388)
T ss_dssp SCEEEEEECSSCTTCTTCEEEE--------------------------EEETTSEEEEEEE
T ss_pred CCEEEEEEecCcccCCCCCEEE--------------------------EEeCCCEEEEEee
Confidence 77877764 56778887 8899999999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=8.8e-23 Score=216.49 Aligned_cols=223 Identities=15% Similarity=0.154 Sum_probs=172.5
Q ss_pred ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 42 k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
..+++++|+|++++++++ ..++.|++|+...+ .+.+|.+.|.+++|+|++++|++|+.
T Consensus 8 ~pIt~~~~s~dg~~la~~----------------~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~ 71 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAIC----------------PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71 (371)
T ss_dssp SCCCEEEECTTSSEEEEE----------------CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCCEEEEE----------------eCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC
Confidence 357899999998866544 45566777766433 35689999999999999999999999
Q ss_pred CCeEEEEECCCCcE--EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-----ccCCCeeEEEEc
Q 036953 116 DHTVKIIDCQTGNC--LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-----DFYRPIASIAFH 188 (792)
Q Consensus 116 DGtVrIWDl~tgk~--v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-----~h~s~V~sVafS 188 (792)
|++|+|||+.+++. ...+.+|...|++++|+| +++.|++++.|++|++|++......... .+...|.+++|+
T Consensus 72 D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 150 (371)
T d1k8kc_ 72 DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 150 (371)
T ss_dssp TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred CCeEEEEeeccccccccccccccccccccccccc-ccccceeecccCcceeeeeeccccccccccccccccccccccccc
Confidence 99999999987754 455678999999999999 9999999999999999998775433222 367889999999
Q ss_pred CCCcEEEEEc-CCeEEEEECCCCCccc---------------CCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 189 AEGELLAVAS-GHKLYIWPYNNKEEAS---------------SPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 189 pdG~~LasgS-dd~V~IWDlrt~~~~~---------------~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
|++++|++++ |+.|++||........ .......|...|++++|+|+++.+++++.+.
T Consensus 151 p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~------- 223 (371)
T d1k8kc_ 151 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS------- 223 (371)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-------
T ss_pred ccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC-------
Confidence 9999999998 5559999987543211 0112234778899999999999777666443
Q ss_pred ceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 253 SMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 253 ~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.+.+|+...+..+.... .|...|.+++|+|||++++
T Consensus 224 ----------------~i~iwd~~~~~~~~~~~------~~~~~v~s~~fs~d~~~la 259 (371)
T d1k8kc_ 224 ----------------TVCLADADKKMAVATLA------SETLPLLAVTFITESSLVA 259 (371)
T ss_dssp ----------------EEEEEEGGGTTEEEEEE------CSSCCEEEEEEEETTEEEE
T ss_pred ----------------cceEEeeecccceeeee------cccccceeeeecCCCCEEE
Confidence 35556655655544332 3778899999999999988
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=3e-21 Score=191.41 Aligned_cols=228 Identities=18% Similarity=0.263 Sum_probs=187.7
Q ss_pred CCCCceEeeeccccee---eCCCCceeeeEEeeCCCceEeecCCCce--------------------------eecCCcE
Q 036953 21 LRRRARNVSRLLAHRE---ISPKTKYVPKRQWVDASKLKTCGPSDSS--------------------------VRDAKRG 71 (792)
Q Consensus 21 ~~s~~r~V~~l~~~re---ls~~tk~V~s~aWspd~~lla~G~~a~s--------------------------v~d~~~~ 71 (792)
...+.+++|+....+. +..+...+..+.|++++.+++.+..... ....+..
T Consensus 36 s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (317)
T d1vyhc1 36 SEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115 (317)
T ss_dssp ESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE
T ss_pred eCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCce
Confidence 3567899998866543 3456678999999999887654322111 1113456
Q ss_pred EEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEcc
Q 036953 72 LVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP 147 (792)
Q Consensus 72 L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP 147 (792)
++++..|+.+++|+..++ .+.+|...+.+++|++++++|++++.|+.|++|++.+++....+.+|...+..+.|+|
T Consensus 116 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 195 (317)
T d1vyhc1 116 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195 (317)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECC
T ss_pred EEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEee
Confidence 788899999999999866 3578999999999999999999999999999999999999999999999999999987
Q ss_pred CC-------------------CCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEE
Q 036953 148 LR-------------------SEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWP 206 (792)
Q Consensus 148 ~d-------------------g~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWD 206 (792)
.. +.++++++.|+.|++||+++++++..+ .|...|.+++|+|++++|++++ ++.|++||
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 275 (317)
T d1vyhc1 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 275 (317)
T ss_dssp SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred ccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEE
Confidence 21 357999999999999999999999888 4889999999999999999988 56699999
Q ss_pred CCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 207 YNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 207 lrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
+++++.. ..+..|...|++++|+|+++.|++++.+..|+.|+
T Consensus 276 ~~~~~~~---~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 276 YKNKRCM---KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CTTSCCC---EEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCcEE---EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9988754 35567899999999999999888877776666553
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=2.6e-22 Score=212.84 Aligned_cols=220 Identities=14% Similarity=0.134 Sum_probs=165.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc--EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk--~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
.++|+|++|+||+++|++|+.|+.|+|||+.+++ ++..+++|.+.|++++|+| ++++|++|+.|++|++||+.+++.
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeeccccc
Confidence 4679999999999999999999999999998775 6678899999999999999 999999999999999999988765
Q ss_pred EEEe---ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccC-CeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 173 IGSC---DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASS-PIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 173 v~t~---~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~-~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
...+ .+...|.+++|+|++++|++++.++ |++|++........ ......|...|++++|+|++++|++++.+..+
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v 165 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence 4443 4678899999999999999998554 99999877654321 12233478899999999999988777766655
Q ss_pred ccCCCceee-ecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccc
Q 036953 248 DSSDSSMTR-ATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEP 326 (792)
Q Consensus 248 rs~d~~~~l-~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~ 326 (792)
+.++..... ........+.. ....+.... ...+|...|..++|+|+|+.++
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~------~~~~~~~~v~~~~~s~~g~~l~---------------- 217 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGS------KMPFGELMF------ESSSSCGWVHGVCFSANGSRVA---------------- 217 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBS------CCCTTCEEE------ECCCCSSCEEEEEECSSSSEEE----------------
T ss_pred EEEeeccCccccccccccccc------cccceeeee------eccCccCcEEEEEeeccccccc----------------
Confidence 544322110 00000000000 001111111 1345889999999999999999
Q ss_pred cccccccCCCCCccccccccccccCCC
Q 036953 327 SASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 327 s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
+++.|.+|.-||...+.
T Consensus 218 ----------s~~~d~~i~iwd~~~~~ 234 (371)
T d1k8kc_ 218 ----------WVSHDSTVCLADADKKM 234 (371)
T ss_dssp ----------EEETTTEEEEEEGGGTT
T ss_pred ----------ccccCCcceEEeeeccc
Confidence 78889999999987663
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.88 E-value=5.7e-21 Score=193.35 Aligned_cols=196 Identities=13% Similarity=0.101 Sum_probs=149.1
Q ss_pred eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----c-CCCCCCeEEEEEcCCCCE
Q 036953 35 REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----L-VPPPRSTIAAAFSPDGRT 109 (792)
Q Consensus 35 rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L-~gH~~~V~sLafSPDG~~ 109 (792)
+.+..++..+++++|+|+++++ ++++.|++|++||..+++ + .+|...|.+++|+|+++
T Consensus 6 ~~~~GH~~~V~~l~~s~dg~~l----------------~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~- 68 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADGKTL----------------FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD- 68 (299)
T ss_dssp EEECCCSSCEEEEEECTTSSEE----------------EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-
T ss_pred eEcCCCCCCcEEEEECCCCCEE----------------EEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-
Confidence 5566788899999999997754 445678889999887653 2 46888999999999886
Q ss_pred EEEEECCCeEEEEECCCCcE---------------------------------EEEec-------CCCCCcEEEEEccCC
Q 036953 110 LASTHGDHTVKIIDCQTGNC---------------------------------LKVLS-------GHRRTPWVVRFHPLR 149 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tgk~---------------------------------v~~L~-------gH~~~VtsVafSP~d 149 (792)
+++++.|+.+++|+...... +..+. .....+.+++|+| +
T Consensus 69 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~-~ 147 (299)
T d1nr0a2 69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-D 147 (299)
T ss_dssp EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-T
T ss_pred eecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 55667788999998642110 00000 1234577889999 8
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEE--EeccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 150 SEILASGSLDHEVRLWDANTSECIG--SCDFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 150 g~lLaSgS~DgtVrLWDl~tg~~v~--t~~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
++++++++.|+.|++||+++++... ...|...|.+++|+|++++|++++. +.|++||+.+............|...|
T Consensus 148 ~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v 227 (299)
T d1nr0a2 148 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV 227 (299)
T ss_dssp SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999998876543 3468899999999999999999884 559999998776544333445578899
Q ss_pred EEEEEccCCCeEEEEEeeCccc
Q 036953 227 RAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~dLr 248 (792)
++++|+|++++|++++.+..++
T Consensus 228 ~~l~~s~~~~~l~sgs~dg~i~ 249 (299)
T d1nr0a2 228 ACVSWSPDNVRLATGSLDNSVI 249 (299)
T ss_dssp EEEEECTTSSEEEEEETTSCEE
T ss_pred ccccccccccceEEEcCCCEEE
Confidence 9999999999777766555443
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.88 E-value=1.8e-20 Score=189.52 Aligned_cols=227 Identities=15% Similarity=0.238 Sum_probs=179.1
Q ss_pred CCCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeec-----------------------------C
Q 036953 21 LRRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRD-----------------------------A 68 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d-----------------------------~ 68 (792)
...+.+.||+....+.+. .+...+.+++|+|++.+++++..+..+.. .
T Consensus 74 s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (340)
T d1tbga_ 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153 (340)
T ss_dssp ETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE
T ss_pred ECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccc
Confidence 356779999987766544 56678999999999998776644333211 0
Q ss_pred CcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
...+.....+.....+..... ....+...+....+.+++..+++++.|+.|++||+.+++++..+.+|...|++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~ 233 (340)
T d1tbga_ 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233 (340)
T ss_dssp TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred ccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEE
Confidence 111223334444444444322 2345677899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEe
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSC---DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~---~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~ 220 (792)
|+| ++++|++++.|+.|++||++..+.+..+ .+...+.+++|+|++++|++++. +.|++||+.+++... ...
T Consensus 234 ~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~---~~~ 309 (340)
T d1tbga_ 234 FFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG---VLA 309 (340)
T ss_dssp ECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEE---EEC
T ss_pred ECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEE---EEc
Confidence 999 9999999999999999999998888776 35677999999999999999985 559999999887543 456
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
.|...|++++|+|++++|++++.+..|+.|+
T Consensus 310 ~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 6899999999999999888777777776653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.85 E-value=2.2e-20 Score=189.01 Aligned_cols=228 Identities=13% Similarity=0.083 Sum_probs=165.2
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
.+.||.+.|++++|+||+++|++|+.||+|++||+.+++++..+. +|...|++++|+| +++ +++++.|+++++|+..
T Consensus 7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~v~~~~~~ 84 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDHLKVVPAG 84 (299)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTEEEEECSS
T ss_pred EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cce-eecccceeeEEEeccC
Confidence 367999999999999999999999999999999999999888885 6999999999999 765 5667789999999987
Q ss_pred CCcEE----EEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 169 TSECI----GSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 169 tg~~v----~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
..... ....+...+.+++|+++++++++++++.+++|+..+.. .......+.+++|+|+++.+++++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~s~~~~~l~~g~~d 157 (299)
T d1nr0a2 85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT-------EVPISYNSSCVALSNDKQFVAVGGQD 157 (299)
T ss_dssp SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE-------EEECSSCEEEEEECTTSCEEEEEETT
T ss_pred Ccccccccccccccccccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccc
Confidence 54321 11245677889999999998888888889999854322 22234567889999999877776664
Q ss_pred CccccCCC-----c-eeeecCCC---cccCCCCceEEEEecCCCEEEEee--------ccCcccCCCceEEEeEECCCCc
Q 036953 245 NDLDSSDS-----S-MTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA--------ELPLMSSLPFLIVPSVSIDDSR 307 (792)
Q Consensus 245 ~dLrs~d~-----~-~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s--------~l~~l~gh~~~VwdV~~SpDGr 307 (792)
..+..++. . ........ ...+.+....++....+..+.+.. ....+.+|...|.+++|+|+|+
T Consensus 158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 237 (299)
T d1nr0a2 158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237 (299)
T ss_dssp SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44443331 1 11111111 233433434444444433444433 2234567889999999999999
Q ss_pred EEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 308 IDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 308 ~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+|+ +++.|++|.-|+...+
T Consensus 238 ~l~--------------------------sgs~dg~i~iwd~~~~ 256 (299)
T d1nr0a2 238 RLA--------------------------TGSLDNSVIVWNMNKP 256 (299)
T ss_dssp EEE--------------------------EEETTSCEEEEETTCT
T ss_pred ceE--------------------------EEcCCCEEEEEECCCC
Confidence 999 7899999999996554
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=1.3e-19 Score=188.94 Aligned_cols=206 Identities=19% Similarity=0.242 Sum_probs=156.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec------------------CCCCCcEEEEEccCCCCEE
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS------------------GHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~------------------gH~~~VtsVafSP~dg~lL 153 (792)
.+|.+.|+|++|+|||++|++|+ |++|+|||+.+++.+..+. .|...|++++|+| ++++|
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l 136 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFL 136 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC-CCCcc
Confidence 36999999999999999999986 8999999999988776664 4566799999999 99999
Q ss_pred EEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEE
Q 036953 154 ASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHF 231 (792)
Q Consensus 154 aSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVaf 231 (792)
++|+.|++|++||...++.+..+. |...|.++.|++++..+++++. +.+++||.++.... ....+......+.|
T Consensus 137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~ 212 (388)
T d1erja_ 137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS----LTLSIEDGVTTVAV 212 (388)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEE
T ss_pred eecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccc----cccccccccccccc
Confidence 999999999999999998888774 8899999999999999999884 55999999877643 23344555666666
Q ss_pred cc-CCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEe-eccCcccCCCceEEEeEECCCCcEE
Q 036953 232 HP-HAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLA-AELPLMSSLPFLIVPSVSIDDSRID 309 (792)
Q Consensus 232 SP-dG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~-s~l~~l~gh~~~VwdV~~SpDGr~l 309 (792)
++ +++.+++++.+.. +.++...++...... .......+|...|.++.|+|+|++|
T Consensus 213 ~~~~~~~l~~~~~d~~-----------------------i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 269 (388)
T d1erja_ 213 SPGDGKYIAAGSLDRA-----------------------VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269 (388)
T ss_dssp CSTTCCEEEEEETTSC-----------------------EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred cCCCCCeEEEEcCCCe-----------------------EEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEE
Confidence 66 5565554443332 333333333332222 2233445689999999999999999
Q ss_pred EEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 310 LQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 310 v~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+ +++.|++|.-||...+
T Consensus 270 ~--------------------------s~~~d~~i~iwd~~~~ 286 (388)
T d1erja_ 270 V--------------------------SGSLDRSVKLWNLQNA 286 (388)
T ss_dssp E--------------------------EEETTSEEEEEEC---
T ss_pred E--------------------------EEECCCcEEEEeccCC
Confidence 9 7888999999996655
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=1.2e-19 Score=189.30 Aligned_cols=191 Identities=14% Similarity=0.127 Sum_probs=146.7
Q ss_pred CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------------CcCCCCCCeEEEEEcCCCC
Q 036953 41 TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------------PLVPPPRSTIAAAFSPDGR 108 (792)
Q Consensus 41 tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------------~L~gH~~~V~sLafSPDG~ 108 (792)
...++.++|+|+. .+..+++++.|++|++|+.... .+..|...|.+++|+++++
T Consensus 63 ~~~v~~v~fsP~~--------------~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 128 (325)
T d1pgua1 63 SSVVTTVKFSPIK--------------GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR 128 (325)
T ss_dssp TSCEEEEEECSST--------------TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS
T ss_pred CCCEEEEEEeeCC--------------CCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC
Confidence 3467778887652 1235567788888999987532 2346888999999999999
Q ss_pred EEEEEEC--CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ccCCCe
Q 036953 109 TLASTHG--DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC----DFYRPI 182 (792)
Q Consensus 109 ~LaSGS~--DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~----~h~s~V 182 (792)
+|++++. ++.+++|+.++++++..+.+|...|++++|+|.+..++++++.|+.+++||+...+....+ .+...|
T Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v 208 (325)
T d1pgua1 129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV 208 (325)
T ss_dssp EEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCE
T ss_pred ccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCcc
Confidence 9988765 6789999999999999999999999999999954556889999999999999988766665 356789
Q ss_pred eEEEEcCC-CcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEc---cCCCeEEEEEeeCccc
Q 036953 183 ASIAFHAE-GELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFH---PHAAPFVLTAEVNDLD 248 (792)
Q Consensus 183 ~sVafSpd-G~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafS---PdG~~LlaS~s~~dLr 248 (792)
.+++|+|+ +++|++++ ++.|++||+++.+... .+..|...+..+.|+ |++++|++++.+..++
T Consensus 209 ~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~---~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~ 276 (325)
T d1pgua1 209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK---YIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 276 (325)
T ss_dssp EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE---ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred EEeeeccccceeccccccccceeeeeeccccccc---cccccccccccceeeeeccCCCEEEEEeCCCeEE
Confidence 99999997 57888887 5559999998887543 334455555444444 6788777776555333
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=1.9e-19 Score=187.66 Aligned_cols=239 Identities=12% Similarity=0.072 Sum_probs=167.9
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCC-CCeEEEEEcC--CCCEEEEE
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPP-RSTIAAAFSP--DGRTLAST 113 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~-~~V~sLafSP--DG~~LaSG 113 (792)
.+..++|+|++..++.+. + ....++.|+.... .+.+|. ..|++++|+| ++++|++|
T Consensus 19 ~~t~l~~~~~~~~la~~~-------~--------~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasg 83 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPC-------G--------KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG 83 (325)
T ss_dssp CCCCCEEETTTTEEEEEE-------T--------TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred CeEEEEECCCCCEEEEEe-------C--------CCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEE
Confidence 456778888877654431 1 1122444543322 345664 6799999998 67899999
Q ss_pred ECCCeEEEEECCCCcE--------EEEecCCCCCcEEEEEccCCCCEEEEEeC--CCeEEEEECCCCcEEEEec-cCCCe
Q 036953 114 HGDHTVKIIDCQTGNC--------LKVLSGHRRTPWVVRFHPLRSEILASGSL--DHEVRLWDANTSECIGSCD-FYRPI 182 (792)
Q Consensus 114 S~DGtVrIWDl~tgk~--------v~~L~gH~~~VtsVafSP~dg~lLaSgS~--DgtVrLWDl~tg~~v~t~~-h~s~V 182 (792)
+.||+|+|||+..++. ...+..|.++|.+++|++ +++++++++. ++.+++|+..+++++..+. |...|
T Consensus 84 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 162 (325)
T d1pgua1 84 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRI 162 (325)
T ss_dssp ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCE
T ss_pred eCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccceeeeeccccc
Confidence 9999999999865432 234567899999999999 8888887764 6789999999999988885 88999
Q ss_pred eEEEEcCCCcE-EEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE-eeCccccCCCceeeecC
Q 036953 183 ASIAFHAEGEL-LAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA-EVNDLDSSDSSMTRATS 259 (792)
Q Consensus 183 ~sVafSpdG~~-LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~-s~~dLrs~d~~~~l~t~ 259 (792)
.+++|+|++++ +++++ ++.|++||....+..........+...|++++|+|++..+++++ .+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~------------- 229 (325)
T d1pgua1 163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK------------- 229 (325)
T ss_dssp EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-------------
T ss_pred ccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc-------------
Confidence 99999999875 55666 56699999987664321111234677899999999865455544 3443
Q ss_pred CCcccCCCCceEEEEecCCCEEEEeeccCcccCCCce----EEEeEECCCCcEEEEccccccCCCCccccccccccccCC
Q 036953 260 PGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFL----IVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSD 335 (792)
Q Consensus 260 sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~----VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~ 335 (792)
+.+|+..++..+.... +|... ++++.+ +||++|+
T Consensus 230 ----------i~iwd~~~~~~~~~l~------~~~~~v~~~~~s~~~-~dg~~l~------------------------- 267 (325)
T d1pgua1 230 ----------ISCFDGKSGEFLKYIE------DDQEPVQGGIFALSW-LDSQKFA------------------------- 267 (325)
T ss_dssp ----------EEEEETTTCCEEEECC------BTTBCCCSCEEEEEE-SSSSEEE-------------------------
T ss_pred ----------eeeeeecccccccccc------ccccccccceeeeec-cCCCEEE-------------------------
Confidence 4444545555544332 23433 444443 6888888
Q ss_pred CCCccccccccccccCCC
Q 036953 336 SNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 336 ~sgs~D~tv~p~~~~~~~ 353 (792)
+++.|++|.-||+..++
T Consensus 268 -s~s~D~~i~iwd~~~~~ 284 (325)
T d1pgua1 268 -TVGADATIRVWDVTTSK 284 (325)
T ss_dssp -EEETTSEEEEEETTTTE
T ss_pred -EEeCCCeEEEEECCCCC
Confidence 78999999999976663
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=6.9e-19 Score=175.64 Aligned_cols=236 Identities=10% Similarity=-0.005 Sum_probs=159.7
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE---EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL---KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v---~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++.. ....+|...|.+++|+|.++.+|++|+.|++|++|++
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~ 86 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence 4689999999999999999999999999999999765432 3333699999999999955678999999999999999
Q ss_pred CCCcEEEEec--cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEec---CCCCeEEEEEccCCCeEEEE
Q 036953 168 NTSECIGSCD--FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLK---TRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 168 ~tg~~v~t~~--h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~---h~~sVtsVafSPdG~~LlaS 241 (792)
.......... +........+.++...+++++ ++.+++||++............. .........+.+++..++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (342)
T d1yfqa_ 87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166 (342)
T ss_dssp SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeee
Confidence 9887766653 333344555667777777777 55699999976554331111111 22344566778888877777
Q ss_pred EeeCccccCC-----CceeeecCCC-------cccCCCCceEEEEecCCCEEEEee--------------------ccCc
Q 036953 242 AEVNDLDSSD-----SSMTRATSPG-------YLRYPPPAVFVANAQSGDHVSLAA--------------------ELPL 289 (792)
Q Consensus 242 ~s~~dLrs~d-----~~~~l~t~sg-------~~~~p~~~~~l~~~ssG~~~~l~s--------------------~l~~ 289 (792)
+.+..++.++ .......... ...++.....+.....+..+.+.. ....
T Consensus 167 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
T d1yfqa_ 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246 (342)
T ss_dssp ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT
T ss_pred cCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccC
Confidence 7655444332 2111111010 011222233333333333322221 1123
Q ss_pred ccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 290 MSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 290 l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
..+|...|.+++|+|+|++|+ +|+.|++|.-||...+
T Consensus 247 ~~~~~~~v~~l~~sp~~~~la--------------------------sg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 247 DTNLAYPVNSIEFSPRHKFLY--------------------------TAGSDGIISCWNLQTR 283 (342)
T ss_dssp CCSSCCCEEEEEECTTTCCEE--------------------------EEETTSCEEEEETTTT
T ss_pred CCcccccceeEEecCCccEEE--------------------------EECCCCEEEEEECCCC
Confidence 356788899999999999999 8999999999997665
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=8.2e-19 Score=187.04 Aligned_cols=173 Identities=20% Similarity=0.258 Sum_probs=140.9
Q ss_pred cEEEEEeCCCeEEEEeccCC----------------------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 036953 70 RGLVSWVEAESLRHLSAKYC----------------------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG 127 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~----------------------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg 127 (792)
..+.+...|+++++|+.... ....+...+.+++|+|++ +|++|+.|++|+|||+.++
T Consensus 137 ~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~ 215 (393)
T d1sq9a_ 137 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 215 (393)
T ss_dssp EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred cEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc
Confidence 46777888999999987421 123455668999999987 8999999999999999999
Q ss_pred cEEEEe------cCCCCCcEEEEEccCCCCEEEEEeCCCe---EEEEECCCCcEEEEe--------------ccCCCeeE
Q 036953 128 NCLKVL------SGHRRTPWVVRFHPLRSEILASGSLDHE---VRLWDANTSECIGSC--------------DFYRPIAS 184 (792)
Q Consensus 128 k~v~~L------~gH~~~VtsVafSP~dg~lLaSgS~Dgt---VrLWDl~tg~~v~t~--------------~h~s~V~s 184 (792)
+++..+ .+|...|++++|+| ++++|++|+.|++ |++||+++++++..+ .|...|++
T Consensus 216 ~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~ 294 (393)
T d1sq9a_ 216 RPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294 (393)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE
T ss_pred ccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceee
Confidence 877654 46899999999999 9999999999974 999999999888775 47889999
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeE----EEEEccCCCeEEEEEeeCccc
Q 036953 185 IAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLR----AVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 185 VafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVt----sVafSPdG~~LlaS~s~~dLr 248 (792)
++|+|++++|++++ |+.|+|||+++++... .+.+|.+.|. .++|+|++..++ +++.|+++
T Consensus 295 l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~---~l~gH~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~ 359 (393)
T d1sq9a_ 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERIT---TLNMHCDDIEIEEDILAVDEHGDSLA-EPGVFDVK 359 (393)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCGGGCSSGGGCCCBCTTSCBCS-SCCEEEEE
T ss_pred eccCCCCCeeEEECCCCEEEEEECCCCCEEE---EECCcCCcccCCccEEEECCCCCEEE-EcccceEE
Confidence 99999999999999 5569999999987543 4566776665 588999998654 44555554
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.79 E-value=4.7e-19 Score=181.39 Aligned_cols=200 Identities=10% Similarity=0.022 Sum_probs=153.4
Q ss_pred CceEeeecccceeeC-CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC-CCeEEEEeccCC---CcCCCCCCe
Q 036953 24 RARNVSRLLAHREIS-PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE-AESLRHLSAKYC---PLVPPPRST 98 (792)
Q Consensus 24 ~~r~V~~l~~~rels-~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~-d~sIrvWd~~t~---~L~gH~~~V 98 (792)
+...+|+....+... .+...+..++|+|+++.+... +.. +..+++|+..++ ++..|...|
T Consensus 24 g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~---------------~~~~g~~v~v~d~~~~~~~~~~~~~~~v 88 (360)
T d1k32a3 24 GQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIH---------------GTREGDFLGIYDYRTGKAEKFEENLGNV 88 (360)
T ss_dssp TEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEE---------------EETTEEEEEEEETTTCCEEECCCCCCSE
T ss_pred CeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEE---------------EcCCCCEEEEEECCCCcEEEeeCCCceE
Confidence 457888886665555 456688999999998765332 122 246788888766 467899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe----------CCCeEEEEECC
Q 036953 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS----------LDHEVRLWDAN 168 (792)
Q Consensus 99 ~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS----------~DgtVrLWDl~ 168 (792)
.+++|+||+++|++++.++.+++|++.+++....+..|...+.+++|+| ++++|+.+. .++.+++||+.
T Consensus 89 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~ 167 (360)
T d1k32a3 89 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDME 167 (360)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred Eeeeecccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccc
Confidence 9999999999999999999999999999999999999999999999999 889888654 34569999999
Q ss_pred CCcEEEEeccCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCccc----CCeEEecCCCCeEEEEEccCCCeEE
Q 036953 169 TSECIGSCDFYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEAS----SPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 169 tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~----~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
+++......+...+..+.|+|+|++|++++.+ .+.+||........ .+.....+...+..+.|++++..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 243 (360)
T d1k32a3 168 GRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE 243 (360)
T ss_dssp TTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCC
T ss_pred cCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCccc
Confidence 99888777888889999999999999998854 49999986554221 0111222444455556667666443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=4e-17 Score=164.40 Aligned_cols=248 Identities=17% Similarity=0.171 Sum_probs=180.2
Q ss_pred CCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceee----------------------------cCCc
Q 036953 22 RRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVR----------------------------DAKR 70 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~----------------------------d~~~ 70 (792)
..+.++||+....+.+. .+...+.+++|++++.+++++ .+..+. ....
T Consensus 31 ~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s-~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (355)
T d1nexb2 31 DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGS-TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 109 (355)
T ss_dssp TTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEE-TTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEE
T ss_pred CCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEe-cccccccccccccccccccccccccccccccccccccc
Confidence 45679999987765554 567789999999976544333 332221 1223
Q ss_pred EEEEEeCCCeEEEEeccCCCc---------------------------CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYCPL---------------------------VPPPRSTIAAAFSPDGRTLASTHGDHTVKIID 123 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L---------------------------~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWD 123 (792)
.++.+..|+.+++|+..+... ..|...+. .+.++++.++++..|+.|++||
T Consensus 110 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d 187 (355)
T d1nexb2 110 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWD 187 (355)
T ss_dssp EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEE
T ss_pred eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccceeeeee
Confidence 467788999999999864311 12233333 3445789999999999999999
Q ss_pred CCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCe
Q 036953 124 CQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS-GHK 201 (792)
Q Consensus 124 l~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~ 201 (792)
+.+++.+..+.++...+.++.|++ ++.++++++.|++|++||++++.++..+. |...|.+++|+ +++|++++ ++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~ 264 (355)
T d1nexb2 188 VAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS 264 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSE
T ss_pred cccccceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccc
Confidence 999999999999999999999999 89999999999999999999999988884 88899999986 46888888 556
Q ss_pred EEEEECCCCCcccCCeEEecCCCCeEEEE-EccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCE
Q 036953 202 LYIWPYNNKEEASSPIIVLKTRRSLRAVH-FHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDH 280 (792)
Q Consensus 202 V~IWDlrt~~~~~~~~~~~~h~~sVtsVa-fSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~ 280 (792)
|++||+++... ....|...+..+. |++++. +++++++. .+.+|+..+|..
T Consensus 265 i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~l~~g~d~-----------------------~i~vwd~~tg~~ 315 (355)
T d1nexb2 265 IRGWDANDYSR-----KFSYHHTNLSAITTFYVSDN-ILVSGSEN-----------------------QFNIYNLRSGKL 315 (355)
T ss_dssp EEEEETTTCCE-----EEEEECTTCCCCCEEEECSS-EEEEEETT-----------------------EEEEEETTTCCB
T ss_pred cccccccccce-----ecccccCCceEEEEEcCCCC-EEEEEeCC-----------------------EEEEEECCCCCE
Confidence 99999987753 2334455555554 555555 66666543 345566666654
Q ss_pred EEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 281 VSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 281 ~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+. ..+.+|...|++++|+|+ +.++
T Consensus 316 ~~-----~~~~~~~~~V~~v~~~~~-~~~~ 339 (355)
T d1nexb2 316 VH-----ANILKDADQIWSVNFKGK-TLVA 339 (355)
T ss_dssp CC-----SCTTTTCSEEEEEEEETT-EEEE
T ss_pred EE-----EEecCCCCCEEEEEEcCC-eEEE
Confidence 21 124558899999999987 3454
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=1.2e-18 Score=185.70 Aligned_cols=176 Identities=14% Similarity=0.087 Sum_probs=131.3
Q ss_pred EEEEEeCCCeEEEEeccCC--------------CcCCCCCCeEEEEEcCC-----CCEEEEEECCCeEEEEECCCCc---
Q 036953 71 GLVSWVEAESLRHLSAKYC--------------PLVPPPRSTIAAAFSPD-----GRTLASTHGDHTVKIIDCQTGN--- 128 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~--------------~L~gH~~~V~sLafSPD-----G~~LaSGS~DGtVrIWDl~tgk--- 128 (792)
.++++..|+.+++|+.... ....+...+..++|.++ +.++++++.||++++||+....
T Consensus 81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~ 160 (393)
T d1sq9a_ 81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160 (393)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence 4567778888999876422 11234566888888874 4688999999999999974221
Q ss_pred ---------------EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-------ccCCCeeEEE
Q 036953 129 ---------------CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-------DFYRPIASIA 186 (792)
Q Consensus 129 ---------------~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-------~h~s~V~sVa 186 (792)
.......+...+.+++|+| ++ +|++|+.|++|++||+.+++++..+ .|..+|++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~ 238 (393)
T d1sq9a_ 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238 (393)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred ceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence 0111224667799999999 65 8999999999999999999887765 3678999999
Q ss_pred EcCCCcEEEEEcCC----eEEEEECCCCCcccC----------CeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 187 FHAEGELLAVASGH----KLYIWPYNNKEEASS----------PIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 187 fSpdG~~LasgSdd----~V~IWDlrt~~~~~~----------~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
|+|+|++|++++++ .|++||+++++.... .....+|...|++++|+|+++.|++++.+..|+
T Consensus 239 ~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~ 314 (393)
T d1sq9a_ 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 314 (393)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred cccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEE
Confidence 99999999999843 299999988764321 111235889999999999999777666555333
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=1.9e-17 Score=166.88 Aligned_cols=168 Identities=20% Similarity=0.240 Sum_probs=140.0
Q ss_pred CcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
+..++.+..++.+++|+....+ ..++...+.++.|+++++.+++++.|+.|++||+.+++.+..+.+|...|.++.
T Consensus 171 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~ 250 (355)
T d1nexb2 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 250 (355)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEE
T ss_pred cceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccc
Confidence 3456777889999999987663 467888999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRR 224 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~ 224 (792)
|++ ++|++++.|++|++||+++........+........+++++++|++++++.|+|||+++++... .....|..
T Consensus 251 ~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~--~~~~~~~~ 325 (355)
T d1nexb2 251 LSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH--ANILKDAD 325 (355)
T ss_dssp ECS---SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCC--SCTTTTCS
T ss_pred ccc---ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEE--EEecCCCC
Confidence 975 7999999999999999999876665544444444567888999999999899999999987653 22456888
Q ss_pred CeEEEEEccCCCeEEEEEe
Q 036953 225 SLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 225 sVtsVafSPdG~~LlaS~s 243 (792)
.|++++|+|+ .++++++
T Consensus 326 ~V~~v~~~~~--~~~~~~s 342 (355)
T d1nexb2 326 QIWSVNFKGK--TLVAAVE 342 (355)
T ss_dssp EEEEEEEETT--EEEEEEE
T ss_pred CEEEEEEcCC--eEEEEEE
Confidence 9999999975 3555554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.9e-16 Score=158.62 Aligned_cols=254 Identities=17% Similarity=0.238 Sum_probs=173.6
Q ss_pred CCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceee------------------------cCCcEEEE
Q 036953 22 RRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVR------------------------DAKRGLVS 74 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~------------------------d~~~~L~S 74 (792)
..+.+++|+....+.+. .+...+.++.|+++ ++.++..+..+. .....+..
T Consensus 35 ~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (342)
T d2ovrb2 35 DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112 (342)
T ss_dssp TTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccc
Confidence 45678999987765544 45667888888875 343332222111 11123444
Q ss_pred EeCCCeEEEEeccCCCc----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCC
Q 036953 75 WVEAESLRHLSAKYCPL----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 75 ~s~d~sIrvWd~~t~~L----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg 150 (792)
+..+..+.+|+..++.. ..+... ...+......+++++.|+.|++||....+.+..+.+|...+..+.+ ++
T Consensus 113 ~~~d~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~ 187 (342)
T d2ovrb2 113 GSRDATLRVWDIETGQCLHVLMGHVAA--VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DG 187 (342)
T ss_dssp EETTSEEEEEESSSCCEEEEEECCSSC--EEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CS
T ss_pred cccceeEEEeecccccceeeeeccccc--ceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC---CC
Confidence 56677777887765532 122222 2233446778999999999999999999999999999887766655 56
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEE
Q 036953 151 EILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRA 228 (792)
Q Consensus 151 ~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVts 228 (792)
.++++++.|++|++||++.++++..+. |...+.+++++ +++|++++ ++.|++||+...+..........|...+.+
T Consensus 188 ~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 265 (342)
T d2ovrb2 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 265 (342)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE
T ss_pred CEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceee
Confidence 899999999999999999999988874 77788888775 46888888 455999999887644311111235667777
Q ss_pred EEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcE
Q 036953 229 VHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRI 308 (792)
Q Consensus 229 VafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~ 308 (792)
+.|+ ++.+++++.+. .+.+|+..++..+..... ....+|...|++++|+|+|++
T Consensus 266 ~~~~--~~~~~s~s~Dg-----------------------~i~iwd~~tg~~i~~~~~-~~~~~~~~~v~~v~~s~~~~~ 319 (342)
T d2ovrb2 266 LQFN--KNFVITSSDDG-----------------------TVKLWDLKTGEFIRNLVT-LESGGSGGVVWRIRASNTKLV 319 (342)
T ss_dssp EEEC--SSEEEEEETTS-----------------------EEEEEETTTCCEEEEEEE-CTTGGGTCEEEEEEECSSEEE
T ss_pred cccC--CCeeEEEcCCC-----------------------EEEEEECCCCCEEEEEec-ccCCCCCCCEEEEEECCCCCE
Confidence 7775 45555555433 355666666666443321 123358889999999999999
Q ss_pred EE
Q 036953 309 DL 310 (792)
Q Consensus 309 lv 310 (792)
++
T Consensus 320 la 321 (342)
T d2ovrb2 320 CA 321 (342)
T ss_dssp EE
T ss_pred EE
Confidence 88
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4.6e-16 Score=152.14 Aligned_cols=239 Identities=14% Similarity=0.168 Sum_probs=164.7
Q ss_pred cEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf 145 (792)
..|++++.|++|++||..++ .+.+|...|++++| ++++|++|+.|+.|++|++..+........+..... .+
T Consensus 26 ~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~ 101 (293)
T d1p22a2 26 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HL 101 (293)
T ss_dssp SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE--EE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccc--cc
Confidence 46788899999999998866 46789999999987 578999999999999999999988777765544433 34
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEE---e-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEe
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGS---C-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t---~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
.+ ....++++..++.+++||..+...... + .+...+..+.+.+ ..+++++ ++.|++||+++.+... ...
T Consensus 102 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~---~~~ 175 (293)
T d1p22a2 102 RF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVR---TLN 175 (293)
T ss_dssp EC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEE---EEE
T ss_pred cc-cccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEE---EEc
Confidence 44 567899999999999999987653222 2 4677777777654 4555555 6669999999887533 445
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----eeeecCCCc-ccCCCCceEEEEecCCCEEEEee---------
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----MTRATSPGY-LRYPPPAVFVANAQSGDHVSLAA--------- 285 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~~l~t~sg~-~~~p~~~~~l~~~ssG~~~~l~s--------- 285 (792)
.+...+..+.++ +..+++++.+..++.++.. ......... ..+......++.+..+..+.++.
T Consensus 176 ~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 253 (293)
T d1p22a2 176 GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRA 253 (293)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTS
T ss_pred ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccc
Confidence 567778887775 5667777766665544322 222211111 11222333444444444445443
Q ss_pred -----ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCcccccccccc
Q 036953 286 -----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSME 348 (792)
Q Consensus 286 -----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~ 348 (792)
....+.+|...|+++++ ||++|+ +++.|++|.-||
T Consensus 254 ~~~~~~~~~~~~H~~~V~~v~~--d~~~l~--------------------------s~s~Dg~i~iWD 293 (293)
T d1p22a2 254 PAGTLCLRTLVEHSGRVFRLQF--DEFQIV--------------------------SSSHDDTILIWD 293 (293)
T ss_dssp CTTTTEEEEECCCSSCCCCEEE--CSSCEE--------------------------ECCSSSEEEEEC
T ss_pred cCCceeeEEecCCCCCEEEEEE--cCCEEE--------------------------EEecCCEEEEeC
Confidence 12345678888988888 567788 789999999886
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=3.5e-17 Score=164.48 Aligned_cols=242 Identities=11% Similarity=0.076 Sum_probs=152.6
Q ss_pred eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEE
Q 036953 35 REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTH 114 (792)
Q Consensus 35 rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS 114 (792)
+.+..+.+.+.+++|++ |++++.|++|++|+..+. ..+|...|.+++++++ ..+++++
T Consensus 7 ~~l~gH~~~I~~l~~s~--------------------l~sgs~Dg~v~~Wd~~~~-~~~h~~~V~~~~~~~~-~~~~s~s 64 (287)
T d1pgua2 7 KTISGHNKGITALTVNP--------------------LISGSYDGRIMEWSSSSM-HQDHSNLIVSLDNSKA-QEYSSIS 64 (287)
T ss_dssp EEECCCSSCEEEEETTT--------------------TEEEETTSCEEETTTTEE-ECCCCSCEEEEECCST-TCCEEEE
T ss_pred EEECCCCCceEEEEECc--------------------EEEEeCCCeEEEEECCCC-CCCCCCCEEEEEecCC-CeEEEEe
Confidence 45566777888887754 355667777777776544 3567777777777654 3466777
Q ss_pred CCCeEEEEECC----------------------------------CCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC-
Q 036953 115 GDHTVKIIDCQ----------------------------------TGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD- 159 (792)
Q Consensus 115 ~DGtVrIWDl~----------------------------------tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D- 159 (792)
.|++|++|++. +++.+..+. +... ..++++ +++.++.++.|
T Consensus 65 ~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~v~~~~~ 140 (287)
T d1pgua2 65 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSP--GSAVSL-SQNYVAVGLEEG 140 (287)
T ss_dssp TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC--EEEEEE-CSSEEEEEETTT
T ss_pred eccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-ccce--eeeeec-cCcceeeecccc
Confidence 77777777643 222233332 1222 345666 56677777665
Q ss_pred CeEEEEECCCCcEEEEe--ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 160 HEVRLWDANTSECIGSC--DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 160 gtVrLWDl~tg~~v~t~--~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
+.+++|++...+....+ .+...+.+++|+|++++|++++ ++.|++||+.+.+... .....|...|++++|+|++.
T Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~h~~~v~~~~~~p~~~ 218 (287)
T d1pgua2 141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT--SRWAFRTSKINAISWKPAEK 218 (287)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--CCSCCCSSCEEEEEECCCC-
T ss_pred ceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccc--ccccccccccceeeeccccc
Confidence 57999999876665555 3678899999999999999998 4559999998876432 12345788999999999765
Q ss_pred eEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccc
Q 036953 237 PFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRR 316 (792)
Q Consensus 237 ~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~ 316 (792)
.......+. .+..... ....+++|....+.. ......+|...|.++.|+|++++ +
T Consensus 219 ~~~~~~~~~-------~~l~sgs------~D~~i~iw~~~~~~~-----~~~~~~~h~~~V~~v~~~~~~~l-~------ 273 (287)
T d1pgua2 219 GANEEEIEE-------DLVATGS------LDTNIFIYSVKRPMK-----IIKALNAHKDGVNNLLWETPSTL-V------ 273 (287)
T ss_dssp -----CCSC-------CEEEEEE------TTSCEEEEESSCTTC-----CEEETTSSTTCEEEEEEEETTEE-E------
T ss_pred ccccccCCC-------CeeEeec------CCCeEEEEECCCCCe-----EEEEeCCCCCCeEEEEECCCCEE-E------
Confidence 322111100 0000000 001244454433221 11224469999999999999874 4
Q ss_pred cCCCCccccccccccccCCCCCccccccccccc
Q 036953 317 ASSSNMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 317 ~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
+++.|++|.-|++
T Consensus 274 --------------------s~g~D~~v~iW~i 286 (287)
T d1pgua2 274 --------------------SSGADACIKRWNV 286 (287)
T ss_dssp --------------------EEETTSCEEEEEE
T ss_pred --------------------EEECCCeEEEEEE
Confidence 5778999988886
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=4.9e-17 Score=162.01 Aligned_cols=180 Identities=10% Similarity=0.033 Sum_probs=124.9
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-------CcCCCCCCeEEEEEcCC-CCEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-------PLVPPPRSTIAAAFSPD-GRTL 110 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-------~L~gH~~~V~sLafSPD-G~~L 110 (792)
.+...|+.++|+|+++++ ++++.|++|++|+.... ...+|...|.+++|+|+ +.+|
T Consensus 9 ~h~d~I~~l~fsp~~~~L----------------~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l 72 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKSLL----------------LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CCSSCEEEEEEEGGGTEE----------------EEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEE
T ss_pred CCCCCEEEEEEeCCCCEE----------------EEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEE
Confidence 455679999999997755 44467888888887543 12369999999999985 5689
Q ss_pred EEEECCCeEEEEECCCCcEEEEecCCCCCcE-EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE----ec---cCCCe
Q 036953 111 ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGS----CD---FYRPI 182 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vt-sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t----~~---h~s~V 182 (792)
++|+.|+.|++|++..+........+...+. ...+.+ +...+++++.|+++++||++++..... .. .....
T Consensus 73 ~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~ 151 (342)
T d1yfqa_ 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN 151 (342)
T ss_dssp EEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred EEcccccceeeeeccccccccccccccccccccccccc-ccccccccccccccceeeccccccceeeeccccccccccee
Confidence 9999999999999998887777765555444 444555 789999999999999999875432221 11 22334
Q ss_pred eEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC
Q 036953 183 ASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 183 ~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG 235 (792)
..+.+.+.+..+++++ ++.|++||++..+..............+....+.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (342)
T d1yfqa_ 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE 205 (342)
T ss_dssp CEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG
T ss_pred eeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCC
Confidence 5566677777777777 5558999887766543222333344445555554433
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.72 E-value=1.6e-16 Score=162.29 Aligned_cols=185 Identities=13% Similarity=0.082 Sum_probs=143.1
Q ss_pred EEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCC--eEEEEECCCCcEEEE
Q 036953 99 IAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH--EVRLWDANTSECIGS 175 (792)
Q Consensus 99 ~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg--tVrLWDl~tg~~v~t 175 (792)
..-.||| ||+++++++. |.|++||+.+++.++ + +|...|.+++|+| |+++|++++.+. .|++||+++++....
T Consensus 6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-~-~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~ 81 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-V-PEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAEKF 81 (360)
T ss_dssp GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEE-C-SCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEE-c-cCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEEEe
Confidence 3567999 9999999875 689999998887655 3 6999999999999 999988877554 799999999988877
Q ss_pred eccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCce
Q 036953 176 CDFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSM 254 (792)
Q Consensus 176 ~~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~ 254 (792)
..+...+.+++|+|+|++|++++. +.+++|++.+.+... ....+...+.+++|+|+|++|+.+..........
T Consensus 82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~--- 155 (360)
T d1k32a3 82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNSRFIAYGFPLKHGETDG--- 155 (360)
T ss_dssp CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS---
T ss_pred eCCCceEEeeeecccccccceeccccccccccccccceee---eeecccccccchhhccceeeeeeeccccccceee---
Confidence 789999999999999999999885 459999998877532 4455778889999999999888766544322110
Q ss_pred eeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 255 TRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 255 ~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.......+|....+....+.. +...+..+.++|||+.|+
T Consensus 156 ----------~~~~~~~v~d~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~ 194 (360)
T d1k32a3 156 ----------YVMQAIHVYDMEGRKIFAATT-------ENSHDYAPAFDADSKNLY 194 (360)
T ss_dssp ----------CCEEEEEEEETTTTEEEECSC-------SSSBEEEEEECTTSCEEE
T ss_pred ----------ccccceeeeccccCceeeecc-------cccccccccccCCCCEEE
Confidence 011124456655544433332 667788899999999998
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=8.2e-16 Score=150.37 Aligned_cols=150 Identities=19% Similarity=0.365 Sum_probs=114.3
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
..+|...|+|++| |+++|++|+.||+|+|||+.+++++..+.+|.+.|++++|+ +++|++|+.|++|++|++..+
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~ 85 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTG 85 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSC
T ss_pred cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc---cceeecccccccccccccccc
Confidence 3467889998765 79999999999999999999999999999999999999874 589999999999999999999
Q ss_pred cEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 171 ECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 171 ~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
............... +......++++. ++.+.+||...............+...+..+.+.+ ..+++.+.+..+.
T Consensus 86 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~ 161 (293)
T d1p22a2 86 EMLNTLIHHCEAVLH-LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIK 161 (293)
T ss_dssp CEEEEECCCCSCEEE-EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEE
T ss_pred ccccccccccccccc-ccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCcee
Confidence 887776544443333 344455555555 56699999988775443334455778888877765 4455555544444
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.70 E-value=3.6e-15 Score=148.56 Aligned_cols=165 Identities=16% Similarity=0.274 Sum_probs=133.5
Q ss_pred EEEeCCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC
Q 036953 73 VSWVEAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGRTLA-STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL 148 (792)
Q Consensus 73 ~S~s~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~~La-SGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~ 148 (792)
++...+++|.+||..++++. .....+..++|+|||++|+ +++.++.|++||+.+++.+..+..+. .+..+.|++
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~- 83 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP- 83 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT-
T ss_pred EEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc-
Confidence 34567889999998877532 3345688999999999885 56678999999999999999998776 468899999
Q ss_pred CCC-EEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCC
Q 036953 149 RSE-ILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRS 225 (792)
Q Consensus 149 dg~-lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~s 225 (792)
++. +++++..++.+.+||..+++....+........+.|+|+++.++.+. +..+.+|+..+.+... .......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 159 (301)
T d1l0qa2 84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN----TVSVGRS 159 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EEECCSS
T ss_pred ccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceee----ecccCCC
Confidence 555 55666778899999999999999998888899999999999877665 4459999998887432 4445567
Q ss_pred eEEEEEccCCCeEEEEEe
Q 036953 226 LRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 226 VtsVafSPdG~~LlaS~s 243 (792)
+..+.|+|++..++++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (301)
T d1l0qa2 160 PKGIAVTPDGTKVYVANF 177 (301)
T ss_dssp EEEEEECTTSSEEEEEET
T ss_pred ceEEEeeccccceeeecc
Confidence 889999999998887765
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=1.4e-15 Score=152.56 Aligned_cols=222 Identities=12% Similarity=0.091 Sum_probs=156.5
Q ss_pred CCCCceEeeecccceeeCCCCceeeeEEeeCCCceEeecCCCceeec------------------CCcEEEEEeCCCeEE
Q 036953 21 LRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRD------------------AKRGLVSWVEAESLR 82 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d------------------~~~~L~S~s~d~sIr 82 (792)
...+.+.+|+.... ...++..+.++.|+++..+++++. +..++. .+..++....++.+.
T Consensus 28 s~Dg~v~~Wd~~~~--~~~h~~~V~~~~~~~~~~~~s~s~-D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (287)
T d1pgua2 28 SYDGRIMEWSSSSM--HQDHSNLIVSLDNSKAQEYSSISW-DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLL 104 (287)
T ss_dssp ETTSCEEETTTTEE--ECCCCSCEEEEECCSTTCCEEEET-TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEE
T ss_pred eCCCeEEEEECCCC--CCCCCCCEEEEEecCCCeEEEEee-ccccccccccccccccceeeeeeccCCceEEEeecccce
Confidence 35677889987654 345666788888888776554432 222211 122333445556677
Q ss_pred EEeccCCCc---CCCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEe
Q 036953 83 HLSAKYCPL---VPPPRSTIAAAFSPDGRTLASTHGDH-TVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGS 157 (792)
Q Consensus 83 vWd~~t~~L---~gH~~~V~sLafSPDG~~LaSGS~DG-tVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS 157 (792)
+|+...+.. ..+... ..+++++++.+++++.|+ .|++|++...+....+. .|...|++++|+| ++++|++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~ 181 (287)
T d1pgua2 105 ILQSFTGDIIKSVRLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGD 181 (287)
T ss_dssp EEETTTCCEEEEEECSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEE
T ss_pred eeeccceeeeeeccccce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEecc-Ccccccccc
Confidence 777665432 122233 345667788888888775 79999997766555554 5788999999999 999999999
Q ss_pred CCCeEEEEECCCCcEEEEe--ccCCCeeEEEEcCC----------CcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCC
Q 036953 158 LDHEVRLWDANTSECIGSC--DFYRPIASIAFHAE----------GELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRR 224 (792)
Q Consensus 158 ~DgtVrLWDl~tg~~v~t~--~h~s~V~sVafSpd----------G~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~ 224 (792)
.|+.|++||+.+++..... .|...|.+++|+|. +.+|++++ |+.|+|||+++.... ......|..
T Consensus 182 ~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~--~~~~~~h~~ 259 (287)
T d1pgua2 182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI--IKALNAHKD 259 (287)
T ss_dssp TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC--EEETTSSTT
T ss_pred ccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE--EEEeCCCCC
Confidence 9999999999998876543 57889999999875 46899888 555999999775432 123446899
Q ss_pred CeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 225 SLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 225 sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
.|++++|+|++. +++++.+..++.|+
T Consensus 260 ~V~~v~~~~~~~-l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 260 GVNNLLWETPST-LVSSGADACIKRWN 285 (287)
T ss_dssp CEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred CeEEEEECCCCE-EEEEECCCeEEEEE
Confidence 999999999875 77777666665543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.1e-15 Score=152.79 Aligned_cols=168 Identities=18% Similarity=0.331 Sum_probs=133.6
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
....++.+..++.+++|+.... .+.+|...+..+.+ ++..|++++.||.|++||+..++++..+.+|...|.++
T Consensus 146 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~ 223 (342)
T d2ovrb2 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 223 (342)
T ss_dssp CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE
T ss_pred ccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEE
Confidence 3456777889999999998755 45678777766655 68899999999999999999999999999999999998
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec----cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeE
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSCD----FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPII 218 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~----h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~ 218 (792)
.+++ ++|++++.|++|++||+...+....+. +...+.++.+ +++++++++ |+.|++||+++++.......
T Consensus 224 ~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~ 298 (342)
T d2ovrb2 224 ELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVT 298 (342)
T ss_dssp EEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred ecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEec
Confidence 8865 699999999999999999988877763 4556666666 456888888 55599999999876541111
Q ss_pred E--ecCCCCeEEEEEccCCCeEEEEE
Q 036953 219 V--LKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 219 ~--~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
. ..|...|++++|+|++..+++++
T Consensus 299 ~~~~~~~~~v~~v~~s~~~~~la~g~ 324 (342)
T d2ovrb2 299 LESGGSGGVVWRIRASNTKLVCAVGS 324 (342)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred ccCCCCCCCEEEEEECCCCCEEEEEe
Confidence 1 23677899999999987544443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=1.4e-15 Score=166.34 Aligned_cols=277 Identities=14% Similarity=0.063 Sum_probs=180.6
Q ss_pred EEEEEeCCCeEEEEeccCCCc----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE--EEEe---cCCCCCcE
Q 036953 71 GLVSWVEAESLRHLSAKYCPL----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC--LKVL---SGHRRTPW 141 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~--v~~L---~gH~~~Vt 141 (792)
.+++..+++++.+||..++++ ..+ ..+..++|||||++|++++.|++|++||+.+++. +..+ .+|.+.+.
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~ 112 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence 357778899999999987743 334 4699999999999999999999999999988763 3333 35666677
Q ss_pred EEEEccCCCCEE-EEEeCCCeEEEEECCCCcEEEEec------------cCCCeeEEEEcCCCcEEEEEc--CCeEEEEE
Q 036953 142 VVRFHPLRSEIL-ASGSLDHEVRLWDANTSECIGSCD------------FYRPIASIAFHAEGELLAVAS--GHKLYIWP 206 (792)
Q Consensus 142 sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~v~t~~------------h~s~V~sVafSpdG~~LasgS--dd~V~IWD 206 (792)
+..|+| |+++| ++++.+++|++||..+++++..+. .......+.++++|..++++. ++.|.+||
T Consensus 113 s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d 191 (432)
T d1qksa2 113 SKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191 (432)
T ss_dssp CCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred ecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence 777888 78765 788899999999999999887652 344567889999998876654 45699999
Q ss_pred CCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc-ccc---CCCce--eeecCC------Cc--ccCCCCceEE
Q 036953 207 YNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND-LDS---SDSSM--TRATSP------GY--LRYPPPAVFV 272 (792)
Q Consensus 207 lrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d-Lrs---~d~~~--~l~t~s------g~--~~~p~~~~~l 272 (792)
....+... .....+...+..+.|+|+|+++++++...+ +.. ..... .+.+.. .. ..++......
T Consensus 192 ~~~~~~~~--~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 269 (432)
T d1qksa2 192 YTDLNNLK--TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW 269 (432)
T ss_dssp TTCSSEEE--EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred ccCCCcce--EEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCcee
Confidence 98776432 233455677899999999998888776332 211 11111 111111 01 1112222333
Q ss_pred EEecCCC-EEE-EeeccCcccCCCceEEEeEECCCCcEEEEcccccc------CCCCccccccccccccCCC----CCcc
Q 036953 273 ANAQSGD-HVS-LAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRA------SSSNMQIEPSASLHLQSDS----NVEQ 340 (792)
Q Consensus 273 ~~~ssG~-~~~-l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~------~Sg~v~~~~s~~~q~~~~~----sgs~ 340 (792)
.....++ .+. +......+.+|...|....++++|..+++....+. ...+.+-.-...++. +|. +++.
T Consensus 270 ~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~ 348 (432)
T d1qksa2 270 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGS 348 (432)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSS
T ss_pred cccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Eechhhccccc
Confidence 3333333 233 33344456678888999999999876653332221 111111111112222 222 8899
Q ss_pred ccccccccccCC
Q 036953 341 DGTVPSMETFPV 352 (792)
Q Consensus 341 D~tv~p~~~~~~ 352 (792)
|+++..|++..+
T Consensus 349 d~~~k~w~~~~~ 360 (432)
T d1qksa2 349 DPEFKTLPIAEW 360 (432)
T ss_dssp CCCEEEECHHHH
T ss_pred CCceEecccccc
Confidence 999999987554
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.66 E-value=3.2e-15 Score=161.41 Aligned_cols=261 Identities=13% Similarity=0.047 Sum_probs=171.2
Q ss_pred EEEEEeCCCeEEEEeccCCCc----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE--e---cCCCCCcE
Q 036953 71 GLVSWVEAESLRHLSAKYCPL----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV--L---SGHRRTPW 141 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~--L---~gH~~~Vt 141 (792)
.+++..++++|++||..++++ ..| ..+..++|||||++|++++.|++|++||+.+++.... + .+|.+.+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 446677899999999988753 344 5699999999999999999999999999998874432 2 25666677
Q ss_pred EEEEccCCCCEE-EEEeCCCeEEEEECCCCcEEEEec------------cCCCeeEEEEcCCCcEEEEEc--CCeEEEEE
Q 036953 142 VVRFHPLRSEIL-ASGSLDHEVRLWDANTSECIGSCD------------FYRPIASIAFHAEGELLAVAS--GHKLYIWP 206 (792)
Q Consensus 142 sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~v~t~~------------h~s~V~sVafSpdG~~LasgS--dd~V~IWD 206 (792)
+++|+| |++++ +++..++++++||..+++++..+. .......+.+++++..++... .+.+.+++
T Consensus 113 s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~ 191 (426)
T d1hzua2 113 SKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191 (426)
T ss_dssp CCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred eeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 788889 77776 555689999999999998876652 233456677888888777665 33477777
Q ss_pred CCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc-cc---cCCCce--eeecCCC-----cc--cCCCCceEEE
Q 036953 207 YNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND-LD---SSDSSM--TRATSPG-----YL--RYPPPAVFVA 273 (792)
Q Consensus 207 lrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d-Lr---s~d~~~--~l~t~sg-----~~--~~p~~~~~l~ 273 (792)
........ .....+...+..+.|+|++++++++....+ +. ..+... ....... .. ..+.......
T Consensus 192 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T d1hzua2 192 YKDIDNLT--VTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS 269 (426)
T ss_dssp CSSSSSCE--EEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred ecccccee--eEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEE
Confidence 76654332 234557788999999999998888765322 11 111111 1111000 00 0011111222
Q ss_pred EecCCC-EEEEee------------ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCcc
Q 036953 274 NAQSGD-HVSLAA------------ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQ 340 (792)
Q Consensus 274 ~~ssG~-~~~l~s------------~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~ 340 (792)
....++ .+.+.. ....+.+|...++.++|+|||+.+++.. + ...+++.
T Consensus 270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~-----------------~--~~~s~~~ 330 (426)
T d1hzua2 270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT-----------------T--FNPDARI 330 (426)
T ss_dssp EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECC-----------------T--TCSSHHH
T ss_pred eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEee-----------------c--CCCCccc
Confidence 222222 222221 1123567888999999999999998211 1 1125778
Q ss_pred ccccccccccCCCC
Q 036953 341 DGTVPSMETFPVIP 354 (792)
Q Consensus 341 D~tv~p~~~~~~~p 354 (792)
|+||.-||+-.+++
T Consensus 331 ~~tv~vwd~~t~~~ 344 (426)
T d1hzua2 331 SQSVAVFDLKNLDA 344 (426)
T ss_dssp HTCEEEEETTCTTS
T ss_pred CCEEEEEECCCCCc
Confidence 99999999877753
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=3e-14 Score=143.40 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=115.8
Q ss_pred cEEEEEeCCCeEEEEeccCCCc------CCCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCcEEEEecCCC-----
Q 036953 70 RGLVSWVEAESLRHLSAKYCPL------VPPPRSTIAAAFSPDGRTLA-STHGDHTVKIIDCQTGNCLKVLSGHR----- 137 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~L------~gH~~~V~sLafSPDG~~La-SGS~DGtVrIWDl~tgk~v~~L~gH~----- 137 (792)
..++++..+++|++||..+.++ ..+...+..++|+|||++++ +++.++.|.+||+.+++.+..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 4578889999999999987642 23456688999999999875 56679999999999999988887553
Q ss_pred CCcEEEEEccCCCCEEEEEe------------CCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEE
Q 036953 138 RTPWVVRFHPLRSEILASGS------------LDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIW 205 (792)
Q Consensus 138 ~~VtsVafSP~dg~lLaSgS------------~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IW 205 (792)
..+..++|+| ++++++.+. .+..+.+||..+++.+..+.....+..++|+++|+++++++.+ +.+|
T Consensus 82 ~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~~ 159 (337)
T d1pbyb_ 82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD-LHVM 159 (337)
T ss_dssp ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS-EEEE
T ss_pred cceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC-ccee
Confidence 3456799999 888888775 4578999999999999999888889999999999999998744 7889
Q ss_pred ECCCCC
Q 036953 206 PYNNKE 211 (792)
Q Consensus 206 Dlrt~~ 211 (792)
|..+.+
T Consensus 160 d~~~~~ 165 (337)
T d1pbyb_ 160 DPEAGT 165 (337)
T ss_dssp ETTTTE
T ss_pred eeecCc
Confidence 987764
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=4e-14 Score=154.74 Aligned_cols=177 Identities=7% Similarity=-0.092 Sum_probs=133.0
Q ss_pred CCCCCCceEeeecccceeeCC--CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc-----
Q 036953 19 NHLRRRARNVSRLLAHREISP--KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL----- 91 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels~--~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L----- 91 (792)
..+..+.+.+|+....+.+.. ....+..++|+|+++++ ++.+.|+.+++||..+.+.
T Consensus 37 ~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l----------------~~~s~dg~v~~~d~~t~~~~~~~~ 100 (432)
T d1qksa2 37 TLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYL----------------FVIGRDGKVNMIDLWMKEPTTVAE 100 (432)
T ss_dssp EETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEE----------------EEEETTSEEEEEETTSSSCCEEEE
T ss_pred EEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEE----------------EEEcCCCCEEEEEeeCCCceEEEE
Confidence 445677889999887766652 23457778888887644 4446778899999876531
Q ss_pred ----CCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCcEEEEecCCC-----------CCcEEEEEccCCCC-EEE
Q 036953 92 ----VPPPRSTIAAAFSPDGRTL-ASTHGDHTVKIIDCQTGNCLKVLSGHR-----------RTPWVVRFHPLRSE-ILA 154 (792)
Q Consensus 92 ----~gH~~~V~sLafSPDG~~L-aSGS~DGtVrIWDl~tgk~v~~L~gH~-----------~~VtsVafSP~dg~-lLa 154 (792)
.+|...+.+..|+|||++| ++++.+++|+|||..+++.+..+..|. .....+.++| ++. +++
T Consensus 101 i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~v 179 (432)
T d1qksa2 101 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIV 179 (432)
T ss_dssp EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEE
T ss_pred EecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-CCCEEEE
Confidence 2455556677788899986 677889999999999999888876543 4455688898 554 456
Q ss_pred EEeCCCeEEEEECCCCcEE--EEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCc
Q 036953 155 SGSLDHEVRLWDANTSECI--GSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEE 212 (792)
Q Consensus 155 SgS~DgtVrLWDl~tg~~v--~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~ 212 (792)
+...+++|.+||..+.+.. ..+.....+..++|+|+|+++++++ ++.+.++|....+.
T Consensus 180 s~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~ 241 (432)
T d1qksa2 180 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 241 (432)
T ss_dssp EETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred EEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceE
Confidence 7778899999999987754 4456777889999999999888887 44599999987764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.49 E-value=4e-13 Score=135.60 Aligned_cols=137 Identities=13% Similarity=0.171 Sum_probs=106.5
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEE-EEEeCCCeEEEEECCCCcEEEEecc
Q 036953 101 AAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEIL-ASGSLDHEVRLWDANTSECIGSCDF 178 (792)
Q Consensus 101 LafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~v~t~~h 178 (792)
++|++++++|++++.|++|.+||+.+++.+.+++ .|...+.+++|+| |++++ +++..++.|++||+.+++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 4789999999999999999999999999999887 4667789999999 87776 5666899999999999998887742
Q ss_pred C-------CCeeEEEEcCCCcEEEEEc-------------CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeE
Q 036953 179 Y-------RPIASIAFHAEGELLAVAS-------------GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPF 238 (792)
Q Consensus 179 ~-------s~V~sVafSpdG~~LasgS-------------dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~L 238 (792)
. ..+..++|+|||+++++++ +..+.+||..+.+... ..........+..+.+++++..+
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-PVRTFPMPRQVYLMRAADDGSLY 159 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-CSEEEECCSSCCCEEECTTSCEE
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee-EEEeeeccCceEEEEecCCCEEE
Confidence 2 2356899999999888764 3448999988776554 22333334556667777777644
Q ss_pred E
Q 036953 239 V 239 (792)
Q Consensus 239 l 239 (792)
+
T Consensus 160 ~ 160 (346)
T d1jmxb_ 160 V 160 (346)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.48 E-value=1.6e-12 Score=139.82 Aligned_cols=276 Identities=8% Similarity=-0.015 Sum_probs=163.2
Q ss_pred CCCCCCceEeeecccceeeCC--CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc-----
Q 036953 19 NHLRRRARNVSRLLAHREISP--KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL----- 91 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels~--~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L----- 91 (792)
..+..+.+.+|++.+.+.+.. ....+..++|+|+++.+ ++.+.|+++++||..+.+.
T Consensus 37 ~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l----------------~~~~~d~~v~vwd~~t~~~~~~~~ 100 (426)
T d1hzua2 37 TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYL----------------LVIGRDARIDMIDLWAKEPTKVAE 100 (426)
T ss_dssp EETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEE----------------EEEETTSEEEEEETTSSSCEEEEE
T ss_pred EEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEE----------------EEEeCCCCEEEEEccCCceeEEEE
Confidence 445778899999988766541 22346677888887644 4446778889998876531
Q ss_pred ----CCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCC------
Q 036953 92 ----VPPPRSTIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH------ 160 (792)
Q Consensus 92 ----~gH~~~V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg------ 160 (792)
.+|...+.+++|+|||++++++ ..++.+++||..+++++..+..|...+..+.+.+......+..+.|+
T Consensus 101 i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~ 180 (426)
T d1hzua2 101 IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 180 (426)
T ss_dssp EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred EeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence 2455667778888999987555 57899999999999998888777665555555441112233333444
Q ss_pred -----eEEEEECCCCc--EEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCC------------eEE
Q 036953 161 -----EVRLWDANTSE--CIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSP------------IIV 219 (792)
Q Consensus 161 -----tVrLWDl~tg~--~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~------------~~~ 219 (792)
.+.+++..... .+..+.+...+..+.|+|++++++++. ++.+.+||....+..... ...
T Consensus 181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (426)
T d1hzua2 181 VKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV 260 (426)
T ss_dssp ETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEE
T ss_pred cCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeee
Confidence 44444444332 233345677889999999999988887 345999999877643200 011
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEee--CccccCCCceeeecCCC---cccCCCCceEEEEec-------CCCEEEEee--
Q 036953 220 LKTRRSLRAVHFHPHAAPFVLTAEV--NDLDSSDSSMTRATSPG---YLRYPPPAVFVANAQ-------SGDHVSLAA-- 285 (792)
Q Consensus 220 ~~h~~sVtsVafSPdG~~LlaS~s~--~dLrs~d~~~~l~t~sg---~~~~p~~~~~l~~~s-------sG~~~~l~s-- 285 (792)
..+...+....+++++...+..... +.+..+.....+..... ...+.+....+++.. .++.+.+..
T Consensus 261 ~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~ 340 (426)
T d1hzua2 261 HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK 340 (426)
T ss_dssp ETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETT
T ss_pred cCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECC
Confidence 1123334444445555432222222 22223333333433222 334444444444321 111122222
Q ss_pred ------------ccCcccCCCceEEEeEECCCCcEEE
Q 036953 286 ------------ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 286 ------------~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
....+..+..+|+.+.|||||++++
T Consensus 341 t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~ 377 (426)
T d1hzua2 341 NLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 377 (426)
T ss_dssp CTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEE
T ss_pred CCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEE
Confidence 1112335677899999999999886
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=2.7e-12 Score=129.56 Aligned_cols=171 Identities=13% Similarity=0.115 Sum_probs=124.6
Q ss_pred EEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEEe---cCCCCCcE
Q 036953 72 LVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVL---SGHRRTPW 141 (792)
Q Consensus 72 L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L---~gH~~~Vt 141 (792)
+++..++++|++|+.... +...|.+.+..++|+|||++|++++ .|+.|++|++........+ ..+...+.
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~ 86 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT 86 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence 355568889999987532 2346888999999999999996665 4899999999766433222 23455678
Q ss_pred EEEEccCCCCEEEEEeC-CCeEEEEECCCCcEEEEe---ccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccC
Q 036953 142 VVRFHPLRSEILASGSL-DHEVRLWDANTSECIGSC---DFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASS 215 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~-DgtVrLWDl~tg~~v~t~---~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~ 215 (792)
.++|+| |+++|++++. +++|.+|+.......... .+...+.++.++|+++++++++ +..|.+|+.........
T Consensus 87 ~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 87 HISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp EEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 899999 8998888875 678999998776554443 4667788999999999988887 34599999877653321
Q ss_pred C---eEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 216 P---IIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 216 ~---~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
. ............++|++++..++.+..
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~ 196 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE 196 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeecc
Confidence 1 112223456788999999998776654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.40 E-value=7.4e-11 Score=116.73 Aligned_cols=216 Identities=16% Similarity=0.207 Sum_probs=151.9
Q ss_pred CCCceEeeecccceeeC--CCCceeeeEEeeCCCceE-eecCCC--ceeec------------------------CCcEE
Q 036953 22 RRRARNVSRLLAHREIS--PKTKYVPKRQWVDASKLK-TCGPSD--SSVRD------------------------AKRGL 72 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels--~~tk~V~s~aWspd~~ll-a~G~~a--~sv~d------------------------~~~~L 72 (792)
..+.+.||+..+.+.+. ........++|+|+++.+ .++... ..+++ ++..+
T Consensus 10 ~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (301)
T d1l0qa2 10 ESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVY 89 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEE
T ss_pred CCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccccccc
Confidence 44567888887776554 222456678899998754 232211 11111 11123
Q ss_pred EEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC
Q 036953 73 VSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL 148 (792)
Q Consensus 73 ~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~ 148 (792)
+....++.+.+|+...++ ...+...+.++.|+|+++.++.. ..++.+.+|+..+++.+..+..+ ..+..+.++|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 167 (301)
T d1l0qa2 90 VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTP- 167 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECT-
T ss_pred ccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeec-
Confidence 334455667777776553 22455678899999999987654 56788999999999988888744 5678999999
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-C---CeEEEEECCCCCcccCCeEEecCC
Q 036953 149 RSEILASGSL-DHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-G---HKLYIWPYNNKEEASSPIIVLKTR 223 (792)
Q Consensus 149 dg~lLaSgS~-DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-d---d~V~IWDlrt~~~~~~~~~~~~h~ 223 (792)
++..+++++. ++.+.+|+....+....+.....+..++|+++++.++++. + +.|++||+.+.+... .....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~----~~~~~ 243 (301)
T d1l0qa2 168 DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA----RIPVG 243 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE----EEECC
T ss_pred cccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE----EEcCC
Confidence 7776666665 5678889988888888887778889999999999877654 2 459999998887432 33445
Q ss_pred CCeEEEEEccCCCeEEEEEe
Q 036953 224 RSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s 243 (792)
..++.++|+|||+++++++.
T Consensus 244 ~~~~~va~spdg~~l~va~~ 263 (301)
T d1l0qa2 244 PDPAGIAVTPDGKKVYVALS 263 (301)
T ss_dssp SSEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEEeCCCCEEEEEEC
Confidence 67899999999998877765
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.30 E-value=9.6e-11 Score=117.31 Aligned_cols=204 Identities=16% Similarity=0.069 Sum_probs=138.9
Q ss_pred CCCceEeeecccceeeCC-----CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc----C
Q 036953 22 RRRARNVSRLLAHREISP-----KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL----V 92 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels~-----~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L----~ 92 (792)
..+.+.||++...+.+.. ....+..++++|+++.+ +++...++.|.+||..++++ .
T Consensus 9 ~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l---------------~v~~~~~~~v~v~D~~t~~~~~~~~ 73 (337)
T d1pbyb_ 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIA---------------YATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEE---------------EEEETTTTEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEE---------------EEEECCCCeEEEEECCCCcEEEEEe
Confidence 346788999988765541 22345677777776643 12334566777777766532 1
Q ss_pred C-----CCCCeEEEEEcCCCCEEEEEE------------CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEE
Q 036953 93 P-----PPRSTIAAAFSPDGRTLASTH------------GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILAS 155 (792)
Q Consensus 93 g-----H~~~V~sLafSPDG~~LaSGS------------~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaS 155 (792)
. +...+..++|+||+++++++. .+..+.+||..+++.+..+.. ...+.+++|+| +++++++
T Consensus 74 ~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~ 151 (337)
T d1pbyb_ 74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYG 151 (337)
T ss_dssp CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEE
T ss_pred cCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEE
Confidence 1 223455799999999998876 467899999999998888874 45688999999 8888888
Q ss_pred EeCCCeEEEEECCCCcEEEEec----------------------------------------------------------
Q 036953 156 GSLDHEVRLWDANTSECIGSCD---------------------------------------------------------- 177 (792)
Q Consensus 156 gS~DgtVrLWDl~tg~~v~t~~---------------------------------------------------------- 177 (792)
++.+ +.+||..+++....+.
T Consensus 152 ~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (337)
T d1pbyb_ 152 LGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp ESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred EcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC
Confidence 7644 6778887665443321
Q ss_pred ---------cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 178 ---------FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 178 ---------h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
+...+..+.+++++.+++.+. +.|++||+.+.+... ...+...+.+++|+|||+++++++.+.+|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~----~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~ 304 (337)
T d1pbyb_ 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAY-NVLESFDLEKNASIK----RVPLPHSYYSVNVSTDGSTVWLGGALGDLA 304 (337)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEE-SEEEEEETTTTEEEE----EEECSSCCCEEEECTTSCEEEEESBSSEEE
T ss_pred cEEEEEecCCCcceEEEEecccceEEEEcc-ccEEEEECCCCcEEE----EEcCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 122334556677777776553 569999998887543 334566788999999999888766544444
Q ss_pred c
Q 036953 249 S 249 (792)
Q Consensus 249 s 249 (792)
.
T Consensus 305 v 305 (337)
T d1pbyb_ 305 A 305 (337)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.28 E-value=1.2e-09 Score=112.63 Aligned_cols=272 Identities=8% Similarity=-0.032 Sum_probs=169.7
Q ss_pred ceEeeecccceeeCC-CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc----CCCCCC--
Q 036953 25 ARNVSRLLAHREISP-KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL----VPPPRS-- 97 (792)
Q Consensus 25 ~r~V~~l~~~rels~-~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L----~gH~~~-- 97 (792)
...+|+....+.+.. .......++|+|+++.+.... ...........++.+++||..++++ ..+...
T Consensus 48 ~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~------~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~ 121 (373)
T d2madh_ 48 QQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALAS------TSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 121 (373)
T ss_pred eEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEe------ecCCcccccccceEEEEEECCCCcEEEEEecCCccee
Confidence 456676666665542 223344689999998875542 2333445556778899999887643 222222
Q ss_pred -----eEEEEEcCCCCEEEEEE--CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 98 -----TIAAAFSPDGRTLASTH--GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 98 -----V~sLafSPDG~~LaSGS--~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
...+.|++|++.++... .++.+.+|+....+..... ..+.++.|+|+....+++.+.|+++.+||...+
T Consensus 122 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~ 197 (373)
T d2madh_ 122 DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG 197 (373)
T ss_pred EeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc
Confidence 24578999999776654 4568899998877654443 356788999944456678899999999999988
Q ss_pred cEEEEec-------cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCC----------CCeEEEEEcc
Q 036953 171 ECIGSCD-------FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTR----------RSLRAVHFHP 233 (792)
Q Consensus 171 ~~v~t~~-------h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~----------~sVtsVafSP 233 (792)
+...... .......+.+++++.+++.+.++++++|+........ ........ .....+++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (373)
T d2madh_ 198 AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN-KAPIDALSGGRKADTWRPGGWQQVAYLK 276 (373)
T ss_pred eeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEE-EEeeccccCcEEeeeeccCcceeeEEec
Confidence 7766542 1223455677777877777777789999988765321 11111111 2334456666
Q ss_pred CCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEE--EE
Q 036953 234 HAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRID--LQ 311 (792)
Q Consensus 234 dG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~l--v~ 311 (792)
++..++........ ... ......+.+++..++..+.... +...+..++|+|||+.+ +
T Consensus 277 d~~~~~~~~~~~~~------~~~-------~~~~~~v~~~d~~t~~~~~~~~-------~~~~~~~~a~spDG~~~l~v- 335 (373)
T d2madh_ 277 SSDGIYLLTSEQSA------WKL-------HAAAKEVTSVTGLVGQTSSQIS-------LGHDVDAISVAQDGGPDLYA- 335 (373)
T ss_pred CCCeEEEecCCCce------EEe-------ecCCCeEEEEECCCCcEEEEec-------CCCCeeEEEECCCCCEEEEE-
Confidence 66655433321110 000 1112334555555655543332 55678899999999853 4
Q ss_pred ccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 312 HASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 312 ~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
++..|++|.-||+..|+
T Consensus 336 -------------------------t~~~d~~v~v~D~~tg~ 352 (373)
T d2madh_ 336 -------------------------LSAGTEVLHIYDAGAGD 352 (373)
T ss_pred -------------------------EeCCCCeEEEEECCCCC
Confidence 57788899999988774
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.26 E-value=3.5e-10 Score=113.54 Aligned_cols=89 Identities=13% Similarity=0.077 Sum_probs=68.1
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCCc-----CCCCCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCCcEEEEecCCC---
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCPL-----VPPPRSTIAAAFSPDGRTLAS-THGDHTVKIIDCQTGNCLKVLSGHR--- 137 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~L-----~gH~~~V~sLafSPDG~~LaS-GS~DGtVrIWDl~tgk~v~~L~gH~--- 137 (792)
.++..+++...+++|.+||..++++ ..|...+.+++|+|||+++++ +..++.|++||+.+++.+..+....
T Consensus 6 ~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~ 85 (346)
T d1jmxb_ 6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG 85 (346)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred CCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccc
Confidence 4566778889999999999998754 245667889999999998754 4578999999999998887765322
Q ss_pred ---CCcEEEEEccCCCCEEEEE
Q 036953 138 ---RTPWVVRFHPLRSEILASG 156 (792)
Q Consensus 138 ---~~VtsVafSP~dg~lLaSg 156 (792)
..+..++|+| |+++++.+
T Consensus 86 ~~~~~~~~v~~s~-DG~~l~v~ 106 (346)
T d1jmxb_ 86 EVGRSMYSFAISP-DGKEVYAT 106 (346)
T ss_dssp EEEECSSCEEECT-TSSEEEEE
T ss_pred ccCCceEEEEEec-CCCEEEEE
Confidence 2355688888 77666554
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.8e-10 Score=115.89 Aligned_cols=133 Identities=9% Similarity=0.127 Sum_probs=98.2
Q ss_pred EEEEEECCCeEEEEECCCCcEEEEe--cCCCCCcEEEEEccCCCCEEEEE-eCCCeEEEEECCCCcEE----EEeccCCC
Q 036953 109 TLASTHGDHTVKIIDCQTGNCLKVL--SGHRRTPWVVRFHPLRSEILASG-SLDHEVRLWDANTSECI----GSCDFYRP 181 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~tgk~v~~L--~gH~~~VtsVafSP~dg~lLaSg-S~DgtVrLWDl~tg~~v----~t~~h~s~ 181 (792)
.+++++.|++|++||++....+..+ ..|.+.|..++|+| |+++|+++ ..|+.|++|++...... ........
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence 3467778999999999765433333 25889999999999 88888554 45899999999765432 22345566
Q ss_pred eeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 182 IASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 182 V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+..++|+|||++|++++ +..|.+|+........ ......+...+.++.|+|++++++.+..
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~v~~s~d~~~~~~~~~ 147 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG-VVDVVEGLDGCHSANISPDNRTLWVPAL 147 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE-EEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred ceEEEEcCCCCEEeecccCCCceeeecccccccee-cccccCCCccceEEEeeecceeeecccc
Confidence 78899999999999987 3459999887665432 2234456677889999999998776654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.06 E-value=4.4e-09 Score=106.97 Aligned_cols=275 Identities=12% Similarity=0.033 Sum_probs=158.3
Q ss_pred CCceEeeecccceeeC-CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcC---------
Q 036953 23 RRARNVSRLLAHREIS-PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLV--------- 92 (792)
Q Consensus 23 s~~r~V~~l~~~rels-~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~--------- 92 (792)
...+.+|+....+.+. ........++|+|+++.+.... .....+..+..++.|++||..++++.
T Consensus 27 ~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~------~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~ 100 (355)
T d2bbkh_ 27 VTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHAS------TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 100 (355)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEE------EEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred cCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEe------CCCccccccCCCCEEEEEECCCCCEEEEEecCCcc
Confidence 3446677776665443 1223344678999988653321 11122233455678888888765321
Q ss_pred --CCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 93 --PPPRSTIAAAFSPDGRTLASTH--GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 93 --gH~~~V~sLafSPDG~~LaSGS--~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
........++|++++++++.++ .+..+.+||..+++.+..+..+.... .+.. .....+..+.|++..+|...
T Consensus 101 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~dg~~~~v~~~ 176 (355)
T d2bbkh_ 101 RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH---IFPT-APDTFFMHCRDGSLAKVAFG 176 (355)
T ss_dssp CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE---EEEE-ETTEEEEEETTSCEEEEECC
T ss_pred eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce---Eeec-CCcceEEEcCCCCEEEEEec
Confidence 1123345689999999988775 46789999999999888776543211 1111 23344444555555555444
Q ss_pred CCcEEEEe-------ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEec---------CCCCeEEEEE
Q 036953 169 TSECIGSC-------DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLK---------TRRSLRAVHF 231 (792)
Q Consensus 169 tg~~v~t~-------~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~---------h~~sVtsVaf 231 (792)
.......+ .+...+....+.+++..++.++ ++.+++|++...+.......... .......+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 256 (355)
T d2bbkh_ 177 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 256 (355)
T ss_dssp SSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred CCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEE
Confidence 33222211 2333455667777877777777 55699999987753210110000 0122345889
Q ss_pred ccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcE--E
Q 036953 232 HPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRI--D 309 (792)
Q Consensus 232 SPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~--l 309 (792)
++++..+++........... .....+.+++..++..+.... +...+..++|+|||+. +
T Consensus 257 ~~d~~~~~~~~~~~~~~~~~-------------~~~~~v~v~d~~t~~~~~~~~-------~~~~~~~~a~spDG~~~l~ 316 (355)
T d2bbkh_ 257 HRALDRIYLLVDQRDEWRHK-------------TASRFVVVLDAKTGERLAKFE-------MGHEIDSINVSQDEKPLLY 316 (355)
T ss_dssp ETTTTEEEEEEEECCTTCTT-------------SCEEEEEEEETTTCCEEEEEE-------EEEEECEEEECCSSSCEEE
T ss_pred eCCCCeEEEEeccCCceeec-------------CCCCeEEEEeCCCCcEEEEec-------CCCCEEEEEEcCCCCeEEE
Confidence 99999887766543222211 011235566666665543332 2345788999999983 3
Q ss_pred EEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 310 LQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 310 v~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
+ ++..|.+|.-||...|+
T Consensus 317 v--------------------------~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 317 A--------------------------LSTGDKTLYIHDAESGE 334 (355)
T ss_dssp E--------------------------EETTTTEEEEEETTTCC
T ss_pred E--------------------------EECCCCEEEEEECCCCC
Confidence 4 45667778888876663
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.05 E-value=9.3e-09 Score=105.72 Aligned_cols=141 Identities=16% Similarity=0.030 Sum_probs=106.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe----------
Q 036953 93 PPPRSTIAAAFSPDGRTLASTH-----GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS---------- 157 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS-----~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS---------- 157 (792)
.+..++.+++++|||++++... .++.|.+||..+++.+..+..+... .++|+| |+++|+.++
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~Sp-DG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAH-SGSEFALASTSFSRIAKGK 94 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcC-CCCEEEEEeecCCcccccc
Confidence 5677899999999999987652 3467999999999999998866544 799999 999988875
Q ss_pred CCCeEEEEECCCCcEEEEeccC-C-------CeeEEEEcCCCcEEEEEc---CCeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 158 LDHEVRLWDANTSECIGSCDFY-R-------PIASIAFHAEGELLAVAS---GHKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 158 ~DgtVrLWDl~tg~~v~t~~h~-s-------~V~sVafSpdG~~LasgS---dd~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
.++.|++||+.+++.+..+... . ....+.|+++++.+++.. ++.+.+|+....+. ..+....
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 167 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD-------DQLLSSP 167 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE-------EEEeccc
Confidence 4578999999999988776422 1 234678889998776654 23488888876652 2233446
Q ss_pred EEEEEccCCCeEEEEEe
Q 036953 227 RAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s 243 (792)
.++.|+|+++.++++..
T Consensus 168 ~~~~~s~~g~~~~v~~~ 184 (373)
T d2madh_ 168 TCYHIHPGAPSTFYLLC 184 (373)
T ss_pred eeEEEecCCCcEEEEEc
Confidence 68899999987765543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.84 E-value=1.3e-08 Score=109.56 Aligned_cols=142 Identities=12% Similarity=0.112 Sum_probs=109.2
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-----CCCCCcEEEEEccCCCCEEEEEeC---------CCeEEEE
Q 036953 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-----GHRRTPWVVRFHPLRSEILASGSL---------DHEVRLW 165 (792)
Q Consensus 100 sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-----gH~~~VtsVafSP~dg~lLaSgS~---------DgtVrLW 165 (792)
.+.|.+|++++.. .|+.+.+||+.+++....+. .|...|.++.|+| |+++|+..+. ++.+.+|
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEE
Confidence 5789998887653 57889999999998876655 3557899999999 9999988754 4678899
Q ss_pred ECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCe------EEec---------CCCCeEEEE
Q 036953 166 DANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPI------IVLK---------TRRSLRAVH 230 (792)
Q Consensus 166 Dl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~------~~~~---------h~~sVtsVa 230 (792)
|+.+++......+...+..+.|+|||++||...++.+++|+..+++...... .... ..+....+.
T Consensus 98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 177 (470)
T d2bgra1 98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (470)
T ss_dssp ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred ECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence 9999886655568888999999999999999988889999998876433110 0000 123345688
Q ss_pred EccCCCeEEEEEee
Q 036953 231 FHPHAAPFVLTAEV 244 (792)
Q Consensus 231 fSPdG~~LlaS~s~ 244 (792)
|+|||+.|+....+
T Consensus 178 wSPDGk~ia~~~~d 191 (470)
T d2bgra1 178 WSPNGTFLAYAQFN 191 (470)
T ss_dssp ECTTSSEEEEEEEE
T ss_pred ECCCCCccceeEec
Confidence 99999988876543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.83 E-value=1.7e-07 Score=100.71 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=85.8
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEEC---------CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHG---------DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH 160 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~---------DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg 160 (792)
++..|...|.++.|||||++|+.++. ++.+.|||+.+++ +..+..|...+..+.|+| |++.++.. .++
T Consensus 56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SP-DG~~ia~~-~~~ 132 (470)
T d2bgra1 56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSP-VGHKLAYV-WNN 132 (470)
T ss_dssp TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECS-STTCEEEE-ETT
T ss_pred hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCcccccccccc-CcceeeEe-ecc
Confidence 45677888999999999999998854 4678999999876 556788999999999999 99999885 577
Q ss_pred eEEEEECCCCcEEEEec-------------------cCCCeeEEEEcCCCcEEEEEc
Q 036953 161 EVRLWDANTSECIGSCD-------------------FYRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 161 tVrLWDl~tg~~v~t~~-------------------h~s~V~sVafSpdG~~LasgS 198 (792)
.+.+|++.+++...... ..+....+.|+|||++|+...
T Consensus 133 ~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (470)
T ss_dssp EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred cceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence 89999999887665431 112345688999999999875
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.72 E-value=1e-07 Score=99.14 Aligned_cols=269 Identities=6% Similarity=-0.080 Sum_probs=154.5
Q ss_pred eeecccceeeC-CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcC-----------CCC
Q 036953 28 VSRLLAHREIS-PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLV-----------PPP 95 (792)
Q Consensus 28 V~~l~~~rels-~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~-----------gH~ 95 (792)
+++....+.+. .........+|+|+++.+.... .....+..+..++.|++||..+.+.. ...
T Consensus 50 ~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~------~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g 123 (368)
T d1mdah_ 50 VSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALAS------TSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEETTTTEEEEEEEECTTCEEEECTTSSCEEEEE------EEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred EEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEc------ccCccccccccCCeEEEEECCCCcEeeeecCCccceeccc
Confidence 33554444333 1122345678888887654431 00011122234566788877654321 111
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 96 RSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
.....++|+|||++|+++. .++.+.+||+.+++.+..+..+..... .+.....++..+.|+++.+|++.......
T Consensus 124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~ 199 (368)
T d1mdah_ 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI----HPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC----EEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE----ccCCCceEEEEcCCCCEEEEEecCCceee
Confidence 2234689999999998887 479999999999999888876654321 22245677778889999999887654322
Q ss_pred Ee-------ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEe---------cCCCCeEEEEEccCCCeE
Q 036953 175 SC-------DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVL---------KTRRSLRAVHFHPHAAPF 238 (792)
Q Consensus 175 t~-------~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~---------~h~~sVtsVafSPdG~~L 238 (792)
.. .+...+..+.+.+++..+.... +.++++++...+......... ........+++++++..+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~ 278 (368)
T d1mdah_ 200 GIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278 (368)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred eeeecccccccccceeecccccCcEEEEecC-CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEE
Confidence 22 1233455677888877666543 446777765544211000000 001122357889998877
Q ss_pred EEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcE-EEEcccccc
Q 036953 239 VLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRI-DLQHASRRA 317 (792)
Q Consensus 239 laS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~-lv~~~~~~~ 317 (792)
++......... ......+.+++..++....... +...++.++|||||+. ++
T Consensus 279 ~v~~~~~~~~~--------------~~~~~~v~v~D~~t~~~~~~~~-------~~~~~~~~a~spDG~~~ly------- 330 (368)
T d1mdah_ 279 MILTVEHSRSC--------------LAAAENTSSVTASVGQTSGPIS-------NGHDSDAIIAAQDGASDNY------- 330 (368)
T ss_dssp EEEEEECSSCT--------------TSCEEEEEEEESSSCCEEECCE-------EEEEECEEEECCSSSCEEE-------
T ss_pred EEEecCCCcee--------------ecCCceEEEEECCCCcEeEEec-------CCCceeEEEECCCCCEEEE-------
Confidence 76554332111 1111235566666665543332 3356788999999973 33
Q ss_pred CCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 318 SSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 318 ~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
.++..|.+|.-||...|+
T Consensus 331 ------------------~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 331 ------------------ANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp ------------------EEETTTTEEEEEESSSCE
T ss_pred ------------------EEeCCCCeEEEEECCCCC
Confidence 045667788888877663
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.61 E-value=6.4e-07 Score=90.57 Aligned_cols=139 Identities=17% Similarity=0.117 Sum_probs=95.9
Q ss_pred EEeCCCeEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE--EecCC----------CCCcE
Q 036953 74 SWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK--VLSGH----------RRTPW 141 (792)
Q Consensus 74 S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~--~L~gH----------~~~Vt 141 (792)
....+..+..++..... ..+...+....+++++..++.++.++.+++|++..++... ....+ .....
T Consensus 174 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 252 (355)
T d2bbkh_ 174 AFGTEGTPEITHTEVFH-PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 252 (355)
T ss_dssp ECCSSSCCEEEECCCCS-CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred EecCCCeEEEEeccccc-ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceE
Confidence 33344444444433222 2334445667788888999999999999999998775321 11111 12334
Q ss_pred EEEEccCCCCEEEEEeCC----------CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCc-E-EEEEc-CCeEEEEECC
Q 036953 142 VVRFHPLRSEILASGSLD----------HEVRLWDANTSECIGSCDFYRPIASIAFHAEGE-L-LAVAS-GHKLYIWPYN 208 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~D----------gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~-~-LasgS-dd~V~IWDlr 208 (792)
.+.+++ ++..++....+ .+|.+||+.+++.+..+.....+.+++|+|||+ + ++++. ++.|++||++
T Consensus 253 ~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~ 331 (355)
T d2bbkh_ 253 QVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331 (355)
T ss_dssp CEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred EEEEeC-CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence 588888 77776665433 369999999999999888777889999999997 3 34444 5669999999
Q ss_pred CCCccc
Q 036953 209 NKEEAS 214 (792)
Q Consensus 209 t~~~~~ 214 (792)
+++...
T Consensus 332 tg~~~~ 337 (355)
T d2bbkh_ 332 SGEELR 337 (355)
T ss_dssp TCCEEE
T ss_pred CCCEEE
Confidence 998543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.56 E-value=2.7e-07 Score=101.33 Aligned_cols=104 Identities=11% Similarity=-0.020 Sum_probs=79.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCC--EEEEEeCCC---------
Q 036953 94 PPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSE--ILASGSLDH--------- 160 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~--lLaSgS~Dg--------- 160 (792)
|........++|||++|++.. .+.+|.++|+.++++...+. .+...+.+++|+| +++ +++..+.+.
T Consensus 70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSC
T ss_pred cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccc
Confidence 334455666778999997765 67899999999999887765 4677899999999 766 444433332
Q ss_pred --------eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc
Q 036953 161 --------EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 161 --------tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS 198 (792)
.+..+|..+.+....+........+.|+|+|+++++++
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~ 194 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTC 194 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred cccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEe
Confidence 23568999888888887667788999999999988776
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=0.00014 Score=70.63 Aligned_cols=186 Identities=15% Similarity=0.153 Sum_probs=112.1
Q ss_pred CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCC-eEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEECC-Ce
Q 036953 41 TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAE-SLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGD-HT 118 (792)
Q Consensus 41 tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~-sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS~D-Gt 118 (792)
...+...+|+|||+.++... .......++....++ ..+ ++..+........|+|+|+.++..... +.
T Consensus 38 ~~~~~sP~wSPDGk~IAf~~----~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~spdg~~i~~~~~~~~~ 106 (269)
T d2hqsa1 38 PQPLMSPAWSPDGSKLAYVT----FESGRSALVIQTLANGAVR-------QVASFPRHNGAPAFSPDGSKLAFALSKTGS 106 (269)
T ss_dssp SSCEEEEEECTTSSEEEEEE----CTTSSCEEEEEETTTCCEE-------EEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred CCceeeeEECCCCCEEEEEE----eeccCcceeeeecccCcee-------EEeeeecccccceecCCCCeeeEeeecCCc
Confidence 34566789999999876542 112223344333222 222 233456778899999999999876643 22
Q ss_pred --EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCC--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEE
Q 036953 119 --VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH--EVRLWDANTSECIGSCDFYRPIASIAFHAEGELL 194 (792)
Q Consensus 119 --VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~L 194 (792)
+..+....... ..............+++.....+++...++ .|.+.++..+................|+|+++.+
T Consensus 107 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 185 (269)
T d2hqsa1 107 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 185 (269)
T ss_dssp CEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEE
T ss_pred cceeecccccccc-eeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccccccccccccccee
Confidence 33333333333 333334455556677773344444544555 4566677666554444556667788999999988
Q ss_pred EEEc-CC-e--EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 195 AVAS-GH-K--LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 195 asgS-dd-~--V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+..+ ++ . +.+.|...... .............|+|||+.|+....
T Consensus 186 ~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~p~~SPDG~~i~f~s~ 233 (269)
T d2hqsa1 186 VMVSSNGGQQHIAKQDLATGGV-----QVLSSTFLDETPSLAPNGTMVIYSSS 233 (269)
T ss_dssp EEEEECSSCEEEEEEETTTCCE-----EECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred EEEeecCCceeeeEeecccccc-----eEeecCccccceEECCCCCEEEEEEc
Confidence 8776 22 2 55666554432 23445556778899999999987764
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=9.8e-05 Score=71.84 Aligned_cols=187 Identities=14% Similarity=0.141 Sum_probs=117.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CCe--EEEEE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDH---TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DHE--VRLWD 166 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DG---tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-Dgt--VrLWD 166 (792)
.+...+...+|||||++||...... .+.+.+...+... .+..+.+......|+| +++.++.... ++. +..+.
T Consensus 36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~~~~~~ 113 (269)
T d2hqsa1 36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMD 113 (269)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEE
T ss_pred cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecC-CCCeeeEeeecCCccceeecc
Confidence 3456688999999999999876543 4677777766644 4455778889999999 7777776553 333 33344
Q ss_pred CCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CC--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 167 ANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GH--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 167 l~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
....................++++++.+...+ ++ .|.+.++...... .............|+|+++.++...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~~~~~~ 189 (269)
T d2hqsa1 114 LASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ----RITWEGSQNQDADVSSDGKFMVMVS 189 (269)
T ss_dssp TTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE----ECCCSSSEEEEEEECTTSSEEEEEE
T ss_pred cccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce----eeecccccccccccccccceeEEEe
Confidence 44444444445555566677888887665554 22 3777777766532 2334556677889999999888766
Q ss_pred eeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEcc
Q 036953 243 EVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHA 313 (792)
Q Consensus 243 s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~ 313 (792)
...... .+.+.....+.. .+.. .........|||||+.|++..
T Consensus 190 ~~~~~~--------------------~i~~~~~~~~~~-~~~~-------~~~~~~~p~~SPDG~~i~f~s 232 (269)
T d2hqsa1 190 SNGGQQ--------------------HIAKQDLATGGV-QVLS-------STFLDETPSLAPNGTMVIYSS 232 (269)
T ss_dssp ECSSCE--------------------EEEEEETTTCCE-EECC-------CSSSCEEEEECTTSSEEEEEE
T ss_pred ecCCce--------------------eeeEeecccccc-eEee-------cCccccceEECCCCCEEEEEE
Confidence 533111 122222222222 2222 334556788999999998543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.25 E-value=0.00025 Score=71.76 Aligned_cols=182 Identities=9% Similarity=0.103 Sum_probs=117.4
Q ss_pred CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 036953 41 TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVK 120 (792)
Q Consensus 41 tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVr 120 (792)
...+..++++++++++.+. ....+|+....++....+ ......+.+++|++||+.+++...++.+.
T Consensus 27 ~~~~e~iAv~pdG~l~vt~-------~~~~~I~~i~p~g~~~~~-------~~~~~~~~gla~~~dG~l~v~~~~~~~~~ 92 (302)
T d2p4oa1 27 NTFLENLASAPDGTIFVTN-------HEVGEIVSITPDGNQQIH-------ATVEGKVSGLAFTSNGDLVATGWNADSIP 92 (302)
T ss_dssp TCCEEEEEECTTSCEEEEE-------TTTTEEEEECTTCCEEEE-------EECSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCCcCCEEECCCCCEEEEe-------CCCCEEEEEeCCCCEEEE-------EcCCCCcceEEEcCCCCeEEEecCCceEE
Confidence 3456678888888876554 234456666665554432 22345689999999999999988888888
Q ss_pred EEECCCCc--EEEEe-cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----------cCCCeeEEE
Q 036953 121 IIDCQTGN--CLKVL-SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-----------FYRPIASIA 186 (792)
Q Consensus 121 IWDl~tgk--~v~~L-~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-----------h~s~V~sVa 186 (792)
+|+..... ..... .........+++.+ +++++++-+.++.+..+|...+....... .......+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~ 171 (302)
T d2p4oa1 93 VVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLK 171 (302)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEE
T ss_pred EEEecccccceeeccccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccc
Confidence 88765432 22221 13456688999999 88999988889999999988765433221 112356666
Q ss_pred EcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 187 FHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 187 fSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
++. ..++.+. .+.|+.++........... ..........++|+++|+.+++
T Consensus 172 ~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~pdgia~d~dG~l~va 224 (302)
T d2p4oa1 172 RFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPE-IFVEQTNIDDFAFDVEGNLYGA 224 (302)
T ss_dssp EET--TEEEEEETTTTEEEEEEBCTTSCBCCCE-EEEESCCCSSEEEBTTCCEEEE
T ss_pred ccC--CceeeecCCCCeEEeccccccccccccc-cccCCCCCcceEECCCCCEEEE
Confidence 654 3444433 5668888887655433222 2223344567999999984443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.19 E-value=7.4e-06 Score=89.59 Aligned_cols=129 Identities=9% Similarity=-0.054 Sum_probs=86.7
Q ss_pred EEEEECCCeEEEEECCCCcEEEEec------------------------------CCCCCcEEEEEccCCCCEEEEE-eC
Q 036953 110 LASTHGDHTVKIIDCQTGNCLKVLS------------------------------GHRRTPWVVRFHPLRSEILASG-SL 158 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tgk~v~~L~------------------------------gH~~~VtsVafSP~dg~lLaSg-S~ 158 (792)
++|++.+|+|++||+.+++.++.+. .|........++| |+++|+.. ..
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEcCC
Confidence 4455566777777766666555542 1223334455578 78888655 47
Q ss_pred CCeEEEEECCCCcEEEEe--ccCCCeeEEEEcCCCc--EEEEEcCCeE------------------EEEECCCCCcccCC
Q 036953 159 DHEVRLWDANTSECIGSC--DFYRPIASIAFHAEGE--LLAVASGHKL------------------YIWPYNNKEEASSP 216 (792)
Q Consensus 159 DgtVrLWDl~tg~~v~t~--~h~s~V~sVafSpdG~--~LasgSdd~V------------------~IWDlrt~~~~~~~ 216 (792)
+++|.+||+.+.++...+ .....+..++|+|+|+ +++..+++.+ ..+|..+.+...
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~-- 170 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW-- 170 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE--
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE--
Confidence 889999999999887765 4677899999999998 4444444433 457776665432
Q ss_pred eEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 217 IIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 217 ~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.. .-......+.|+|+|+++++++.
T Consensus 171 -qI-~v~~~p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 171 -QV-IVDGNLDNTDADYTGKYATSTCY 195 (441)
T ss_dssp -EE-EESSCCCCEEECSSSSEEEEEES
T ss_pred -EE-ecCCCccceEECCCCCEEEEEec
Confidence 11 12345678999999999888875
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.13 E-value=1.1e-05 Score=83.19 Aligned_cols=117 Identities=13% Similarity=-0.066 Sum_probs=85.5
Q ss_pred CCCCeEEEEEcCCCCEEEEE---ECC--CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe----------C
Q 036953 94 PPRSTIAAAFSPDGRTLAST---HGD--HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS----------L 158 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSG---S~D--GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS----------~ 158 (792)
+......++..++++..... ..+ ..|.+||..+++.+..+..+... .++|+| |++.|+..+ .
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~sp-Dg~~i~~~~~~~~~~~~g~~ 94 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECC-CCCEEEEEcccCcccccccc
Confidence 34444555667788864332 333 45777799999998888766544 689999 888877654 4
Q ss_pred CCeEEEEECCCCcEEEEecc--------CCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcc
Q 036953 159 DHEVRLWDANTSECIGSCDF--------YRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEA 213 (792)
Q Consensus 159 DgtVrLWDl~tg~~v~t~~h--------~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~ 213 (792)
|++|++||..+++++..+.. ......++|+|||++|+++. ++.+.+||+.+.+..
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~ 159 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD 159 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE
T ss_pred CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEe
Confidence 78899999999999887631 12234689999999998876 355999999888754
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.12 E-value=0.00037 Score=72.92 Aligned_cols=106 Identities=14% Similarity=0.102 Sum_probs=71.0
Q ss_pred CCcEEEEEccCCCCEEEEEeC-CCeEEEEECCC-CcEE--EEe---ccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECC
Q 036953 138 RTPWVVRFHPLRSEILASGSL-DHEVRLWDANT-SECI--GSC---DFYRPIASIAFHAEGELLAVAS--GHKLYIWPYN 208 (792)
Q Consensus 138 ~~VtsVafSP~dg~lLaSgS~-DgtVrLWDl~t-g~~v--~t~---~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlr 208 (792)
..+.++.|+| ++++++.+.. ...|.+|+... +... ... ........+.|+|+++++++.. ++.|.+||+.
T Consensus 145 ~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 145 TGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence 3478999999 8888887764 45788887654 3222 111 2456789999999999988776 5669999997
Q ss_pred CCCcccCCe-EEe---------------cCCCCeEEEEEccCCCeEEEEEee
Q 036953 209 NKEEASSPI-IVL---------------KTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 209 t~~~~~~~~-~~~---------------~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
..+...... ... .+......+.++|||++++++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 665321000 000 011235678999999998887653
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=6.8e-05 Score=81.77 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=96.4
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCC---CCCcEEEEEccCCCCEEEEEe---------CCCeEEEEECC
Q 036953 101 AAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH---RRTPWVVRFHPLRSEILASGS---------LDHEVRLWDAN 168 (792)
Q Consensus 101 LafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH---~~~VtsVafSP~dg~lLaSgS---------~DgtVrLWDl~ 168 (792)
..|.+++.++.. ..+|.|.+||+.+++....+..+ .-.+....|+| |+++++... ..+.+.++|+.
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~ 99 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEcc
Confidence 357777765543 55788999999888765545432 23567788999 888877654 34678899999
Q ss_pred CCcEEEEec---cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCC-----------------CeEE
Q 036953 169 TSECIGSCD---FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRR-----------------SLRA 228 (792)
Q Consensus 169 tg~~v~t~~---h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~-----------------sVts 228 (792)
+++...... ....+....|+|||+.||...++.|++.+...+...+ ....+... .-..
T Consensus 100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~--lt~~g~~~~i~nG~~d~vyeee~~~~~~a 177 (465)
T d1xfda1 100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR--VVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (465)
T ss_dssp SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE--EECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred CCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEE--EecccCcceeeccccchhhhhhhccccce
Confidence 887654432 2345667899999999999888889999987665432 11111111 1257
Q ss_pred EEEccCCCeEEEEEe
Q 036953 229 VHFHPHAAPFVLTAE 243 (792)
Q Consensus 229 VafSPdG~~LlaS~s 243 (792)
+.|||||++|+...-
T Consensus 178 ~~WSPDgk~iaf~~~ 192 (465)
T d1xfda1 178 HWWSPDGTRLAYAAI 192 (465)
T ss_dssp EEECTTSSEEEEEEE
T ss_pred EEECCCCCeEEEEEe
Confidence 889999999887654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.91 E-value=0.007 Score=61.59 Aligned_cols=147 Identities=11% Similarity=0.077 Sum_probs=88.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCcEEEEecC--CCCCcEEEEEccCCCCEEEEEeCC------CeE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGD----HTVKIIDCQTGNCLKVLSG--HRRTPWVVRFHPLRSEILASGSLD------HEV 162 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~D----GtVrIWDl~tgk~v~~L~g--H~~~VtsVafSP~dg~lLaSgS~D------gtV 162 (792)
......+++++||+.+++...+ +.+...+...+........ -...+..+.+.+ ++++.++.... +.+
T Consensus 81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v 159 (319)
T d2dg1a1 81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGV 159 (319)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEE
T ss_pred CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCccee
Confidence 4467899999999887765432 3455555555554443332 123577899999 88877764321 235
Q ss_pred EEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCe-----EEecCCCCeEEEEEccCC
Q 036953 163 RLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPI-----IVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 163 rLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~-----~~~~h~~sVtsVafSPdG 235 (792)
..++...+........-...+.++|+++++.|+++. .++|+.||+.......... ........-..+++..+|
T Consensus 160 ~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G 239 (319)
T d2dg1a1 160 YYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD 239 (319)
T ss_dssp EEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC
T ss_pred EEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC
Confidence 555655444333333344568899999999776664 5679999986543211011 011112234578999999
Q ss_pred CeEEEEE
Q 036953 236 APFVLTA 242 (792)
Q Consensus 236 ~~LlaS~ 242 (792)
+.+++..
T Consensus 240 ~l~Va~~ 246 (319)
T d2dg1a1 240 NLYVAMY 246 (319)
T ss_dssp CEEEEEE
T ss_pred CEEEEEc
Confidence 8554443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.82 E-value=0.018 Score=56.95 Aligned_cols=135 Identities=10% Similarity=0.166 Sum_probs=91.3
Q ss_pred CeEEEEEcCCC-CEEEEE-ECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 97 STIAAAFSPDG-RTLAST-HGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 97 ~V~sLafSPDG-~~LaSG-S~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
....+++..+. ..+++. +.++.|.+++. .++....+. .......++++.+ +++++++....+.+.++|.. ++.+
T Consensus 71 ~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~ 147 (279)
T d1q7fa_ 71 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVL 147 (279)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccccccccccccccceeccCCccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Ccee
Confidence 45566666644 444433 34567877875 466666664 3456678899998 88888887778888888864 5666
Q ss_pred EEec---cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEec---CCCCeEEEEEccCCCeEE
Q 036953 174 GSCD---FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLK---TRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 174 ~t~~---h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~---h~~sVtsVafSPdG~~Ll 239 (792)
..+. +......+++.++++++++.. .+.|++||..... . .... .......+++.++|+.++
T Consensus 148 ~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~-~----~~~g~~g~~~~P~giavD~~G~i~V 215 (279)
T d1q7fa_ 148 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-L----RQIGGEGITNYPIGVGINSNGEILI 215 (279)
T ss_dssp EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-E----EEESCTTTSCSEEEEEECTTCCEEE
T ss_pred ecccccccccccceeeeccceeEEeeeccccceeeeecCCce-e----eeecccccccCCcccccccCCeEEE
Confidence 6663 456678899999998877766 4569999975432 1 1222 334578899999998443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.75 E-value=0.00049 Score=71.89 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=78.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEE--E---ec--------------CCCCCcEEEEEccCCCCEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLK--V---LS--------------GHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~--~---L~--------------gH~~~VtsVafSP~dg~lL 153 (792)
.......++|+|+++++++.. .+++|.+|+++.++... . +. .+......+.++| ++++|
T Consensus 191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l 269 (365)
T d1jofa_ 191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYM 269 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEE
T ss_pred CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEE
Confidence 346789999999999886665 57899999987654221 1 11 1122345789999 88888
Q ss_pred EEEeC-C-----CeEEEEECCCCcEEEE---e----ccCCCeeEEEEcC-CCcEEEEEc--CCeEEEEECCCCC
Q 036953 154 ASGSL-D-----HEVRLWDANTSECIGS---C----DFYRPIASIAFHA-EGELLAVAS--GHKLYIWPYNNKE 211 (792)
Q Consensus 154 aSgS~-D-----gtVrLWDl~tg~~v~t---~----~h~s~V~sVafSp-dG~~LasgS--dd~V~IWDlrt~~ 211 (792)
+++.. + ..|..|++.....+.. + ........++++| +|++|+++. ++.|.+|+++...
T Consensus 270 yvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred EEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 77642 2 2377777765322211 1 1344567899998 899988886 4569999876543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.001 Score=72.05 Aligned_cols=206 Identities=9% Similarity=0.016 Sum_probs=117.6
Q ss_pred CceEeeeccccee---eCC---CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cC--
Q 036953 24 RARNVSRLLAHRE---ISP---KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LV-- 92 (792)
Q Consensus 24 ~~r~V~~l~~~re---ls~---~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~-- 92 (792)
+...+|+....++ +.. ....+....|+|+++.+.... ...++|-.+..+.+.++|+.++. +.
T Consensus 37 g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~-------~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~ 109 (465)
T d1xfda1 37 GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSY-------NVEPIYQHSYTGYYVLSKIPHGDPQSLDPP 109 (465)
T ss_dssp SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEE-------SCCCCSSSCCCSEEEEEESSSCCCEECCCT
T ss_pred CcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEE-------cccceeEeeccccEEEEEccCCceeeccCc
Confidence 3466776655443 221 122455667899987653331 11122322345567777876653 21
Q ss_pred -CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCC-----------------cEEEEEccCCCCEE
Q 036953 93 -PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRT-----------------PWVVRFHPLRSEIL 153 (792)
Q Consensus 93 -gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~-----------------VtsVafSP~dg~lL 153 (792)
.....+....|||||+.||... ++.|.+.+..+++.++... +..+. -.++-|+| |++.|
T Consensus 110 ~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~i 187 (465)
T d1xfda1 110 EVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRL 187 (465)
T ss_dssp TCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEE
T ss_pred cCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC-CCCeE
Confidence 2233456689999999998876 5678888887776555443 22111 24678999 88888
Q ss_pred EEEeCC-CeEEE---------------------------------EECCCCcEEEEe-c------cCCCeeEEEEcCCCc
Q 036953 154 ASGSLD-HEVRL---------------------------------WDANTSECIGSC-D------FYRPIASIAFHAEGE 192 (792)
Q Consensus 154 aSgS~D-gtVrL---------------------------------WDl~tg~~v~t~-~------h~s~V~sVafSpdG~ 192 (792)
+....| ..|.. +|+.++...... . ....+..+.|+++++
T Consensus 188 af~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~ 267 (465)
T d1xfda1 188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK 267 (465)
T ss_dssp EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred EEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCe
Confidence 876533 33333 333332211111 0 112367889999998
Q ss_pred EEEEEcC---C--eEEEEECCCCCcccCCeEEecCCCCe----EEEEEccCCCeEEE
Q 036953 193 LLAVASG---H--KLYIWPYNNKEEASSPIIVLKTRRSL----RAVHFHPHAAPFVL 240 (792)
Q Consensus 193 ~LasgSd---d--~V~IWDlrt~~~~~~~~~~~~h~~sV----tsVafSPdG~~Lla 240 (792)
+++...+ + .|.++|..+++... .........| ....|+|+|+.++.
T Consensus 268 ~~~~~~nR~q~~~~i~~~d~~tg~~~~--~~~e~~~~wv~~~~~~p~~~~dg~~~~f 322 (465)
T d1xfda1 268 VAVTWLNRAQNVSILTLCDATTGVCTK--KHEDESEAWLHRQNEEPVFSKDGRKFFF 322 (465)
T ss_dssp EEEEEEETTSCEEEEEEEETTTCCEEE--EEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred EEEEEEccccccceEEEEcCCCCcEEE--EEEEcCCceEeccCCceeEccCCCeeEE
Confidence 7766542 2 28899998887532 1111222222 34679999987654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.68 E-value=0.0014 Score=64.60 Aligned_cols=142 Identities=9% Similarity=0.058 Sum_probs=91.7
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 96 RSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
-....++++++|+.+++.. ..+.+..++...........+-.....++++++ +++++++....+.+++++-.+...+.
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~ 92 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVL 92 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceeee
Confidence 4568999999999776654 456777776554332222222223467899999 88888887777778777766666555
Q ss_pred EeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 175 SCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 175 t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
.........+++++++++++++-. ++.+..++........ .........+.++++++++.+++.
T Consensus 93 ~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~~~v~~ 157 (260)
T d1rwia_ 93 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV---LPFTGLNDPDGVAVDNSGNVYVTD 157 (260)
T ss_dssp CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE---CCCCSCCSCCEEEECTTCCEEEEE
T ss_pred eeeeeeecccccccccceeEeeccccccccccccccceeee---eeecccCCcceeeecCCCCEeeec
Confidence 555556788999999999877665 4557777765544221 111223455789999999854443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.59 E-value=0.0083 Score=61.00 Aligned_cols=142 Identities=10% Similarity=0.098 Sum_probs=96.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC----CeEEEEECCCCcE
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD----HEVRLWDANTSEC 172 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D----gtVrLWDl~tg~~ 172 (792)
.+..++|+++|+.+++-...+.|..||..+++....+........+++|++ +++++++...+ +.+...|...+..
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCcee
Confidence 457899999999777767889999999888776666666667789999999 88887765432 3455556666555
Q ss_pred EEEec---cCCCeeEEEEcCCCcEEEEEcC-------CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 173 IGSCD---FYRPIASIAFHAEGELLAVASG-------HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 173 v~t~~---h~s~V~sVafSpdG~~LasgSd-------d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
..... .....+.+++.++|++.++... +.++.++...... ......-..-+.++|+|+++.|.++.
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~----~~~~~~~~~pnGia~s~dg~~lyvad 195 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV----TPIIQNISVANGIALSTDEKVLWVTE 195 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE----EEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee----EEEeeccceeeeeeeccccceEEEec
Confidence 44443 2345788999999997776542 1255555443321 11222334467899999999777665
Q ss_pred e
Q 036953 243 E 243 (792)
Q Consensus 243 s 243 (792)
.
T Consensus 196 ~ 196 (319)
T d2dg1a1 196 T 196 (319)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.43 E-value=0.0046 Score=61.41 Aligned_cols=116 Identities=16% Similarity=0.297 Sum_probs=89.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec--CCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEECCC
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS--GHRRTPWVVRFHPLRSEILASGSL-DHEVRLWDANT 169 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~--gH~~~VtsVafSP~dg~lLaSgS~-DgtVrLWDl~t 169 (792)
.+......+++.++++.+++....+.|++||.. ++.+..+. +......+|++.+ +++++++-.. ++.|.+|+. +
T Consensus 154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~-~ 230 (279)
T d1q7fa_ 154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-D 230 (279)
T ss_dssp TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-T
T ss_pred ccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECC-C
Confidence 456678899999999888888888999999964 66677763 3555688999999 8888877554 457999984 6
Q ss_pred CcEEEEec---cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCC
Q 036953 170 SECIGSCD---FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 170 g~~v~t~~---h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~ 211 (792)
++.+.++. .......+++.++|.++++..+++|++|......
T Consensus 231 G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 231 GQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA 275 (279)
T ss_dssp SCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred CCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeeec
Confidence 78777763 2345789999999987777667779999987653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.40 E-value=0.0057 Score=60.01 Aligned_cols=141 Identities=9% Similarity=0.055 Sum_probs=96.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
....++++.++++.+++-..+..+.+++............-.....++++.+ +++++++...++.|..+|.........
T Consensus 98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~ 176 (260)
T d1rwia_ 98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVL 176 (260)
T ss_dssp CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEEC
T ss_pred eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecC-CCCEeeeccccccccccccccceeeee
Confidence 4578999999999877766667777777655432222222234567899999 888888888889999999876543332
Q ss_pred -eccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 176 -CDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 176 -~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
.........++++++|+++++.. .++|..++........ .....-.....++++++|. |+++
T Consensus 177 ~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~---~~~~~~~~P~~i~~d~~g~-l~va 240 (260)
T d1rwia_ 177 PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV---LPFTGLNTPLAVAVDSDRT-VYVA 240 (260)
T ss_dssp CCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEE---CCCCSCCCEEEEEECTTCC-EEEE
T ss_pred eccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEE---EccCCCCCeEEEEEeCCCC-EEEE
Confidence 23445678999999999888776 4558888765443211 1112234567999999987 4444
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.31 E-value=0.021 Score=57.92 Aligned_cols=144 Identities=9% Similarity=0.034 Sum_probs=87.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCC----CCcEEEEEccCCCCEEEEEeC--------------
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHR----RTPWVVRFHPLRSEILASGSL-------------- 158 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~----~~VtsVafSP~dg~lLaSgS~-------------- 158 (792)
....++|.++++.++++...+.|..+|...+.......... ...+.+++.+ ++++.++-..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~ 150 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceecc
Confidence 35789999999999888887889899977554322111111 1367899999 8888887432
Q ss_pred -CCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCc----EEEEEc--CCeEEEEECCCCCcccCCeEEec----CCCCeE
Q 036953 159 -DHEVRLWDANTSECIGSCDFYRPIASIAFHAEGE----LLAVAS--GHKLYIWPYNNKEEASSPIIVLK----TRRSLR 227 (792)
Q Consensus 159 -DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~----~LasgS--dd~V~IWDlrt~~~~~~~~~~~~----h~~sVt 227 (792)
++.|..++. .++.......-...+.++|+++++ +|+++. .++|+.||+.............. ......
T Consensus 151 ~~G~v~~~~~-dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd 229 (314)
T d1pjxa_ 151 KFGSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 229 (314)
T ss_dssp SCEEEEEECT-TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred CCceEEEEee-cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence 234444444 234443333344557899998764 455553 55698888765433221111111 122345
Q ss_pred EEEEccCCCeEEEEE
Q 036953 228 AVHFHPHAAPFVLTA 242 (792)
Q Consensus 228 sVafSPdG~~LlaS~ 242 (792)
.+++..+|+.+++..
T Consensus 230 GiavD~~GnlyVa~~ 244 (314)
T d1pjxa_ 230 GMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEEBTTCCEEEEEE
T ss_pred eeEEecCCcEEEEEc
Confidence 788999998555443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.18 E-value=0.024 Score=57.52 Aligned_cols=141 Identities=11% Similarity=0.162 Sum_probs=90.6
Q ss_pred CeEEEEEcCCCCEEEEEEC---------------CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC-----EEEEE
Q 036953 97 STIAAAFSPDGRTLASTHG---------------DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE-----ILASG 156 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~---------------DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~-----lLaSg 156 (792)
..+.+++.++|+..++-.. +|.|..++.+ ++..... ..-....+++|+| +++ ++++-
T Consensus 118 ~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~-d~d~~~~~lyv~d 194 (314)
T d1pjxa_ 118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRH-MNDGRPYQLIVAE 194 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEE-CTTSCEEEEEEEE
T ss_pred CCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCcceeeeeEECC-CCCcceeEEEEEe
Confidence 3678999999988776422 2344444432 3433332 2334567899998 543 55566
Q ss_pred eCCCeEEEEECCCCcEEEE------ec--cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeE
Q 036953 157 SLDHEVRLWDANTSECIGS------CD--FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLR 227 (792)
Q Consensus 157 S~DgtVrLWDl~tg~~v~t------~~--h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVt 227 (792)
+..+.|..||+.....+.. +. .......+++..+|++.++.. .+.|++||.+.++... .........+
T Consensus 195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~---~i~~p~~~~t 271 (314)
T d1pjxa_ 195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM---RIRCPFEKPS 271 (314)
T ss_dssp TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE---EEECSSSCEE
T ss_pred ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEE---EEECCCCCEE
Confidence 7788899998764332221 11 122356899999999776654 5669999987665322 2333346788
Q ss_pred EEEEccCCCeEEEEEe
Q 036953 228 AVHFHPHAAPFVLTAE 243 (792)
Q Consensus 228 sVafSPdG~~LlaS~s 243 (792)
+++|.|+++.|+++..
T Consensus 272 ~~afg~d~~~lyVt~~ 287 (314)
T d1pjxa_ 272 NLHFKPQTKTIFVTEH 287 (314)
T ss_dssp EEEECTTSSEEEEEET
T ss_pred EEEEeCCCCEEEEEEC
Confidence 9999999987877664
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.16 E-value=0.0026 Score=63.88 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=85.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC--cEEE
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS--ECIG 174 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg--~~v~ 174 (792)
.+..++++|||+.+++...+++|..||.. ++ ...+......+.+++|.+ +++++++...++.+..|+.... ....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceee
Confidence 47789999999999998889999888865 33 334445667899999999 8899998888888888876543 2222
Q ss_pred --EeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCC
Q 036953 175 --SCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKE 211 (792)
Q Consensus 175 --t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~ 211 (792)
........+.+.+.++++++++.+ ++.+..+|.....
T Consensus 106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~ 145 (302)
T d2p4oa1 106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 145 (302)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred ccccCCccccceeEEccCCCEEeeccccccceeeeccCCc
Confidence 223556789999999999888876 4558888887654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.10 E-value=0.14 Score=51.08 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=99.7
Q ss_pred CCCeEEEEeccCCCc--CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC----CCCCcEEEEEccCCC
Q 036953 77 EAESLRHLSAKYCPL--VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG----HRRTPWVVRFHPLRS 150 (792)
Q Consensus 77 ~d~sIrvWd~~t~~L--~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g----H~~~VtsVafSP~dg 150 (792)
..+.|..|+..+++. ......+.++++.++|..+++ +.+ .+.++|..+++....... ....+..+.+.| ++
T Consensus 38 ~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G 114 (295)
T d2ghsa1 38 LERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SG 114 (295)
T ss_dssp GGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TS
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CC
Confidence 344455555444321 122456889999888876654 555 588999998875443321 122477889999 88
Q ss_pred CEEEEEeCC----CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcc--cCCeEEe--
Q 036953 151 EILASGSLD----HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEA--SSPIIVL-- 220 (792)
Q Consensus 151 ~lLaSgS~D----gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~--~~~~~~~-- 220 (792)
++.++...+ +.-.+|.+..++.......-...+.++|+++++.++.+. .+.|+.|++...... .......
T Consensus 115 ~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~ 194 (295)
T d2ghsa1 115 ALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS 194 (295)
T ss_dssp CEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred CEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEecc
Confidence 877765432 345677777776665555555678999999998776664 455999988543221 1111111
Q ss_pred -cCCCCeEEEEEccCCCeEEE
Q 036953 221 -KTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 221 -~h~~sVtsVafSPdG~~Lla 240 (792)
........+++..+|+..++
T Consensus 195 ~~~~g~pdG~~vD~~GnlWva 215 (295)
T d2ghsa1 195 TGIKGGMDGSVCDAEGHIWNA 215 (295)
T ss_dssp TTSSSEEEEEEECTTSCEEEE
T ss_pred CcccccccceEEcCCCCEEee
Confidence 12344677888888874443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.70 E-value=0.0041 Score=59.70 Aligned_cols=106 Identities=7% Similarity=0.090 Sum_probs=67.8
Q ss_pred EEcCC--CcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcc
Q 036953 186 AFHAE--GELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYL 263 (792)
Q Consensus 186 afSpd--G~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~ 263 (792)
..+|| |+.++..+++.|++.|+..++. ..+..+...+...+|||||+.|+.+.....-.
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~----~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~--------------- 65 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGST----RKIVSNLGVINNARFFPDGRKIAIRVMRGSSL--------------- 65 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCCE----EEEECSSSEEEEEEECTTSSEEEEEEEESTTC---------------
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCCE----EEEecCCCcccCEEECCCCCEEEEEEeeCCCC---------------
Confidence 35788 9999988888899999988773 33556677789999999999998776432100
Q ss_pred cCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEc
Q 036953 264 RYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQH 312 (792)
Q Consensus 264 ~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~ 312 (792)
....+++.....+....+..............+...++|||+.|++.
T Consensus 66 --~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 66 --NTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp --CEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred --CceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence 00113333334444444433221122233455778899999999843
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.69 E-value=0.16 Score=50.55 Aligned_cols=169 Identities=12% Similarity=0.088 Sum_probs=106.7
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcC------C--CCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCcEEEEecCC
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLV------P--PPRSTIAAAFSPDGRTLASTHG----DHTVKIIDCQTGNCLKVLSGH 136 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~------g--H~~~V~sLafSPDG~~LaSGS~----DGtVrIWDl~tgk~v~~L~gH 136 (792)
+..+|.+..+ -+..++..++++. . ....++.+.+.++|+..++... .+.-.+|.+..++....+.+
T Consensus 69 dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~- 146 (295)
T d2ghsa1 69 DSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD- 146 (295)
T ss_dssp TTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-
T ss_pred CCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-
Confidence 3445554443 4667776655321 1 1224789999999997776543 23456777777765555543
Q ss_pred CCCcEEEEEccCCCC-EEEEEeCCCeEEEEECCCC------cEEEEe---ccCCCeeEEEEcCCCcEEEEEc-CCeEEEE
Q 036953 137 RRTPWVVRFHPLRSE-ILASGSLDHEVRLWDANTS------ECIGSC---DFYRPIASIAFHAEGELLAVAS-GHKLYIW 205 (792)
Q Consensus 137 ~~~VtsVafSP~dg~-lLaSgS~DgtVrLWDl~tg------~~v~t~---~h~s~V~sVafSpdG~~LasgS-dd~V~IW 205 (792)
-.....++|++ +++ ++++-+..+.|..+++... +..... ........++++.+|++.++.- .++|..|
T Consensus 147 ~~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~ 225 (295)
T d2ghsa1 147 ISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRY 225 (295)
T ss_dssp ESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred cCCcceeeecC-CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEe
Confidence 34567899999 555 5566677888998887531 111111 2345578899999998776654 5669999
Q ss_pred ECCCCCcccCCeEEecCCCCeEEEEEc-cCCCeEEEEEee
Q 036953 206 PYNNKEEASSPIIVLKTRRSLRAVHFH-PHAAPFVLTAEV 244 (792)
Q Consensus 206 Dlrt~~~~~~~~~~~~h~~sVtsVafS-PdG~~LlaS~s~ 244 (792)
|-. ++... ...-....+++++|- |+.+.|++++..
T Consensus 226 dp~-G~~~~---~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 226 DTD-GNHIA---RYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp CTT-CCEEE---EEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred cCC-CcEee---EecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 964 44332 222223568999995 788888887653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.95 E-value=0.02 Score=54.60 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=67.8
Q ss_pred EEcCC--CCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-C-----CeEEEEECCCCcEE
Q 036953 102 AFSPD--GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-D-----HEVRLWDANTSECI 173 (792)
Q Consensus 102 afSPD--G~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-D-----gtVrLWDl~tg~~v 173 (792)
..+|| |++++..+. +.|.+.|+.+++.. .|..+.+.+...+|+| |++.|+.... + ..|.+++..+++..
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~ 81 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIK 81 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence 35788 999887654 57888899988754 5666777889999999 8888875532 2 24777788777665
Q ss_pred EEec-------cCCCeeEEEEcCCCcEEEEEc
Q 036953 174 GSCD-------FYRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 174 ~t~~-------h~s~V~sVafSpdG~~LasgS 198 (792)
.... .........|+|+|+.|+...
T Consensus 82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 4422 123456789999999988764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.68 E-value=1.2 Score=43.39 Aligned_cols=145 Identities=10% Similarity=0.061 Sum_probs=95.9
Q ss_pred CCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 95 PRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
...+..++|....++|+-.. .++.|+..+++.+.....+..-...+.++++....+++..+-...+.|.+.++......
T Consensus 35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~ 114 (263)
T d1npea_ 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114 (263)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE
Confidence 34477899998777666654 56789888988766555554444578899998635555566667789999999876554
Q ss_pred EEec-cCCCeeEEEEcCCCcEEEEEc-C-C--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 174 GSCD-FYRPIASIAFHAEGELLAVAS-G-H--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 174 ~t~~-h~s~V~sVafSpdG~~LasgS-d-d--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
..+. .......++.+|...+|+... + + +|.--++...... ......-...+.+++.+.++.|..+.
T Consensus 115 ~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~---~i~~~~~~~P~glaiD~~~~~lYw~d 185 (263)
T d1npea_ 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR---ILAQDNLGLPNGLTFDAFSSQLCWVD 185 (263)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE---EEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce---eeeeecccccceEEEeecCcEEEEEe
Confidence 4443 335688999999877766553 2 2 2555566544321 12223345668999998888776654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=93.78 E-value=0.44 Score=50.78 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=69.2
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCcEEEEecC-CCCCcEEEEEccC-CCCEEEEEeCCC------------------eEEE
Q 036953 106 DGRTLASTH-GDHTVKIIDCQTGNCLKVLSG-HRRTPWVVRFHPL-RSEILASGSLDH------------------EVRL 164 (792)
Q Consensus 106 DG~~LaSGS-~DGtVrIWDl~tgk~v~~L~g-H~~~VtsVafSP~-dg~lLaSgS~Dg------------------tVrL 164 (792)
||++|+... .+..|.+.|+.+.++.+.+.- -...+.+++..++ +..+++..+.+. .+..
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 789888876 578999999999998665542 3345666666431 456777666532 3677
Q ss_pred EECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc
Q 036953 165 WDANTSECIGSCDFYRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 165 WDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS 198 (792)
+|..+.+..+.+........++++++|+++++.+
T Consensus 178 ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts 211 (459)
T d1fwxa2 178 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS 211 (459)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred EecCCceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence 8999998888887677788899999999988875
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=5.4 Score=38.47 Aligned_cols=162 Identities=10% Similarity=0.045 Sum_probs=101.4
Q ss_pred CeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCc----EEEEecCCCCCcEEEEEccCCC
Q 036953 79 ESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQTGN----CLKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 79 ~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~tgk----~v~~L~gH~~~VtsVafSP~dg 150 (792)
..|+..+..+.. +......+..++|++..++|+-.. .++.|.-.+++... ....+......+.++++.+..+
T Consensus 10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~ 89 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (266)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence 346666655432 234455688999999777777665 45667766665321 2223333345677888876456
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc---CCeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 151 EILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS---GHKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 151 ~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS---dd~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
++..+-...+.|.+.++........+ ........++.+|...+|.... ..+|...++...... ......-...
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~---~l~~~~~~~p 166 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLVTENIQWP 166 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE---EEECSSCSCE
T ss_pred eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee---ccccccccee
Confidence 67777677889999999876654444 3456788999998665555443 234777777655422 1222334567
Q ss_pred EEEEEccCCCeEEEEEe
Q 036953 227 RAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s 243 (792)
+.+++++.++.|..+..
T Consensus 167 ~gl~iD~~~~~lYw~d~ 183 (266)
T d1ijqa1 167 NGITLDLLSGRLYWVDS 183 (266)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred eEEEeeccccEEEEecC
Confidence 89999998887776643
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=90.56 E-value=1.2 Score=44.10 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=73.4
Q ss_pred EEEEEcCCCCEEEEEECCC-----------eEEEEECCCCcEE--EEe-cCCCCCcEEEEEccCCCCEEEEEeCC-CeEE
Q 036953 99 IAAAFSPDGRTLASTHGDH-----------TVKIIDCQTGNCL--KVL-SGHRRTPWVVRFHPLRSEILASGSLD-HEVR 163 (792)
Q Consensus 99 ~sLafSPDG~~LaSGS~DG-----------tVrIWDl~tgk~v--~~L-~gH~~~VtsVafSP~dg~lLaSgS~D-gtVr 163 (792)
.......+|+.++.|+.+. .+.+||..+++-. ... ..|.....+..+.+ ++++++.|+.+ .++.
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 101 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCccee
Confidence 3344445777777777421 3678999877522 122 23444455677888 88999988765 5799
Q ss_pred EEECCCCcEEEEe--ccCCCeeEEEEcCCCcEEEEEcC-------CeEEEEECCCCC
Q 036953 164 LWDANTSECIGSC--DFYRPIASIAFHAEGELLAVASG-------HKLYIWPYNNKE 211 (792)
Q Consensus 164 LWDl~tg~~v~t~--~h~s~V~sVafSpdG~~LasgSd-------d~V~IWDlrt~~ 211 (792)
+||..+.+....- .....-...+..+||++++.++. ..+.+||..+.+
T Consensus 102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 9999887654332 22333446777889999998862 238899987764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=90.42 E-value=0.69 Score=50.33 Aligned_cols=80 Identities=10% Similarity=0.095 Sum_probs=55.6
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCee--EEEEcCCCc-E
Q 036953 117 HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIA--SIAFHAEGE-L 193 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~--sVafSpdG~-~ 193 (792)
|.+.-||+.+++.+..+.- .....+-.+.- .+.+++.++.|+.++.+|.++|+.++.+.....+. -+.|..+|+ +
T Consensus 438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEeCCCCeEeeeccC-CCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 4678899999999887762 22222212222 46788899999999999999999999986444332 356667885 5
Q ss_pred EEEEc
Q 036953 194 LAVAS 198 (792)
Q Consensus 194 LasgS 198 (792)
|++..
T Consensus 516 v~v~a 520 (560)
T d1kv9a2 516 VAIMA 520 (560)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.31 E-value=0.71 Score=50.44 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=56.3
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCe--eEEEEcCCCc-E
Q 036953 117 HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPI--ASIAFHAEGE-L 193 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V--~sVafSpdG~-~ 193 (792)
|.|.-+|+.+++.+..+..+.. +.+-..+- .+.+++.++.|+.++.+|.++|+.++.+.....+ .-+.|..+|+ |
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCC-CccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 5688889999999888874332 22211222 5678888999999999999999999998644333 2367777885 5
Q ss_pred EEEE
Q 036953 194 LAVA 197 (792)
Q Consensus 194 Lasg 197 (792)
+++.
T Consensus 544 v~i~ 547 (582)
T d1flga_ 544 LGVT 547 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.20 E-value=7.7 Score=40.48 Aligned_cols=104 Identities=13% Similarity=0.210 Sum_probs=61.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE--Eec------CCCCCcEEEEEccC---CCCEEEEEeC------
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK--VLS------GHRRTPWVVRFHPL---RSEILASGSL------ 158 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~--~L~------gH~~~VtsVafSP~---dg~lLaSgS~------ 158 (792)
+...+|+|.||++.|++--.+|.|++++..+++... .+. .-.+...+|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~ 106 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence 357799999999988776557999999987765432 221 12356788999982 2333333221
Q ss_pred C----C--eEEEEECCCCc--E-----E-EEe--ccCCCeeEEEEcCCCcEEEEEcC
Q 036953 159 D----H--EVRLWDANTSE--C-----I-GSC--DFYRPIASIAFHAEGELLAVASG 199 (792)
Q Consensus 159 D----g--tVrLWDl~tg~--~-----v-~t~--~h~s~V~sVafSpdG~~LasgSd 199 (792)
+ . .+..+...... . + ... ........|.|.|||.++++.++
T Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 1 1 13333333221 0 1 111 12345678999999987777654
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=87.97 E-value=9.4 Score=40.93 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=39.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCccc
Q 036953 160 HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 160 gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
+.+.-||+.+++.++.+....+...=...-.|.++++++ ++.++.+|.++++.+.
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW 512 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeE
Confidence 357889999999998886554433222334566777776 6669999999999654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=87.94 E-value=5.7 Score=41.94 Aligned_cols=135 Identities=7% Similarity=-0.031 Sum_probs=86.1
Q ss_pred EEeCCCeEEEEeccCCC-----cCCCCCCeEEEEEcC--CCCEEEEEECCC------------------eEEEEECCCCc
Q 036953 74 SWVEAESLRHLSAKYCP-----LVPPPRSTIAAAFSP--DGRTLASTHGDH------------------TVKIIDCQTGN 128 (792)
Q Consensus 74 S~s~d~sIrvWd~~t~~-----L~gH~~~V~sLafSP--DG~~LaSGS~DG------------------tVrIWDl~tgk 128 (792)
+-.....|-+.+..+.+ .......+..++..+ +-.+++..+.+. .+.++|..+.+
T Consensus 105 NDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~ 184 (459)
T d1fwxa2 105 NDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE 184 (459)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTE
T ss_pred EcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCce
Confidence 33356677777776442 123455677777655 445666666532 35678998888
Q ss_pred EEEEecCCCCCcEEEEEccCCCCEEEEEeCCC--------------------------------------eEEEEECCCC
Q 036953 129 CLKVLSGHRRTPWVVRFHPLRSEILASGSLDH--------------------------------------EVRLWDANTS 170 (792)
Q Consensus 129 ~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg--------------------------------------tVrLWDl~tg 170 (792)
....+.- .+....+.+++ +++++++.+.+. .+.+-|.++.
T Consensus 185 V~~QV~V-~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~ 262 (459)
T d1fwxa2 185 VAWQVLV-SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKE 262 (459)
T ss_dssp EEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG
T ss_pred EEEEeee-CCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeeccccc
Confidence 7776652 33566799999 889988877542 1233343321
Q ss_pred ---cEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCC
Q 036953 171 ---ECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNK 210 (792)
Q Consensus 171 ---~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~ 210 (792)
..+..+........+..+|||+++++++ +..+.++|+++-
T Consensus 263 ~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki 307 (459)
T d1fwxa2 263 ASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 307 (459)
T ss_dssp --CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred CCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence 2222333333456789999999999998 566999999643
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.01 E-value=14 Score=35.42 Aligned_cols=142 Identities=8% Similarity=-0.041 Sum_probs=83.8
Q ss_pred cEEEEEeCCCeEEEEeccCCC---c-CCCCCCeEEEEEcCCCCEEEEEEC-CCe--EEEEECCCCcEEEEecCCCCCcEE
Q 036953 70 RGLVSWVEAESLRHLSAKYCP---L-VPPPRSTIAAAFSPDGRTLASTHG-DHT--VKIIDCQTGNCLKVLSGHRRTPWV 142 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~---L-~gH~~~V~sLafSPDG~~LaSGS~-DGt--VrIWDl~tgk~v~~L~gH~~~Vts 142 (792)
...|+-...+.|...+..... + .........++++|...+++.... .+. |.--+++...........-....+
T Consensus 92 ~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~g 171 (263)
T d1npea_ 92 TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNG 171 (263)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEE
T ss_pred eEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccce
Confidence 333444456677777765331 2 223356889999996666654432 223 444456544433333333356789
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcc
Q 036953 143 VRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEA 213 (792)
Q Consensus 143 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~ 213 (792)
+++.+.++.+..+-...++|...|+........+.......++++. +..|+.+. .++|...|..+++..
T Consensus 172 laiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM 242 (263)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccc
Confidence 9998834444455556788999999765544444333445678775 44455443 566888898877643
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=85.89 E-value=3.5 Score=44.63 Aligned_cols=78 Identities=10% Similarity=0.013 Sum_probs=47.1
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeE
Q 036953 160 HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPF 238 (792)
Q Consensus 160 gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~L 238 (792)
+.|..+|+++++.++.+....+..+-...-.+.++++++ ++.++.+|.++++.+. .........-.-+.|..||+..
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW--~~~l~~~~~a~P~ty~~dGkqY 521 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW--NFKMPSGGIGSPMTYSFKGKQY 521 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETTEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEE--EEECCCCceecceEEEECCEEE
Confidence 468889999999998876544332212222455666666 6679999999998653 1112222222235566688744
Q ss_pred E
Q 036953 239 V 239 (792)
Q Consensus 239 l 239 (792)
+
T Consensus 522 i 522 (571)
T d2ad6a1 522 I 522 (571)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=85.82 E-value=0.85 Score=49.68 Aligned_cols=80 Identities=11% Similarity=0.060 Sum_probs=56.1
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeE--EEEcCCCc-E
Q 036953 117 HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIAS--IAFHAEGE-L 193 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~s--VafSpdG~-~ 193 (792)
|.+.-||+.+++.+..++... +..+=..+- .+.+++.++.|+.++.+|.++|+.++.+.....+.. +.|..+|+ |
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY 534 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ccEEEeCCCCCceEeeecCCC-CCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 468889999999998886332 211111222 567888999999999999999999999864443332 56666886 5
Q ss_pred EEEEc
Q 036953 194 LAVAS 198 (792)
Q Consensus 194 LasgS 198 (792)
+++.+
T Consensus 535 v~v~~ 539 (573)
T d1kb0a2 535 VSVAV 539 (573)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55544
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=85.74 E-value=3.1 Score=44.83 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=40.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCccc
Q 036953 160 HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 160 gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
+.+.-||+.+++.++.+....+..+-...-.+.+++.++ ++.++.+|.++++.+.
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW 493 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeE
Confidence 568889999999999886555544333344566666666 6679999999999654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=85.23 E-value=1 Score=49.16 Aligned_cols=79 Identities=9% Similarity=0.070 Sum_probs=53.8
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCee--EEEEcCCCc-E
Q 036953 117 HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIA--SIAFHAEGE-L 193 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~--sVafSpdG~-~ 193 (792)
|.|.-+|+.+++.+.+...-.....+.... .+.+++.++.|+.++.+|.++|+.++.+.....+. -+.|..+|+ |
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T--agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY 521 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT--KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY 521 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEE--TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEe--cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence 457778888998887765221111111111 45688889999999999999999999986544433 366777885 5
Q ss_pred EEEE
Q 036953 194 LAVA 197 (792)
Q Consensus 194 Lasg 197 (792)
+++.
T Consensus 522 i~v~ 525 (571)
T d2ad6a1 522 IGSM 525 (571)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.08 E-value=17 Score=34.68 Aligned_cols=144 Identities=10% Similarity=-0.037 Sum_probs=89.4
Q ss_pred CCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcEE
Q 036953 96 RSTIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRLWDANTSECI 173 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrLWDl~tg~~v 173 (792)
..+..+++.+.+..|+.+ ...+.|.+.+++.......+........+++++|..+.++.+-. ....|...++......
T Consensus 77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~ 156 (266)
T d1ijqa1 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 156 (266)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence 446688998866666555 45678999999877666666666677899999984444444432 3345766777655444
Q ss_pred EEec-cCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 174 GSCD-FYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 174 ~t~~-h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
.... .-.....+++++.++.|+.+. .+.|...|+....... .............+++. +.+|..+.
T Consensus 157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~-~~~~~~~~~~p~~lav~--~~~ly~td 225 (266)
T d1ijqa1 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT-ILEDEKRLAHPFSLAVF--EDKVFWTD 225 (266)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EEECTTTTSSEEEEEEE--TTEEEEEE
T ss_pred cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEE-EEeCCCcccccEEEEEE--CCEEEEEE
Confidence 4333 335678999999888777765 4569999986654321 11111112234556655 45555543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=84.83 E-value=15 Score=36.81 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=80.1
Q ss_pred cCCCC-EEEEEE---CCCeEEEEECCCCc--E--EEEec-CCCCCcEEEEEccCCCCEEEEEeC---C------------
Q 036953 104 SPDGR-TLASTH---GDHTVKIIDCQTGN--C--LKVLS-GHRRTPWVVRFHPLRSEILASGSL---D------------ 159 (792)
Q Consensus 104 SPDG~-~LaSGS---~DGtVrIWDl~tgk--~--v~~L~-gH~~~VtsVafSP~dg~lLaSgS~---D------------ 159 (792)
..+|+ +|++.. ...+|.||++.... . +..+. .......++.+.. ++.+++|-.. +
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~ 185 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGL 185 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTC
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcC
Confidence 44665 344432 35678888875432 1 12222 1234578888888 7788887311 0
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe
Q 036953 160 HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP 237 (792)
Q Consensus 160 gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~ 237 (792)
.+..+|....++.......-...+.|+++||+++|+++. .++|++|++....... ......-....-.+.+.+++..
T Consensus 186 ~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~-~~~~~~l~~~pDNi~~d~~~g~ 264 (340)
T d1v04a_ 186 AWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT-PLRVLSFDTLVDNISVDPVTGD 264 (340)
T ss_dssp CCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE-EEEEEECSSEEEEEEECTTTCC
T ss_pred CceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccc-eEEEecCCCCCCccEEecCCCE
Confidence 233445444444433334456789999999999888876 5669999987554332 1122223444567788764444
Q ss_pred EEEEEe
Q 036953 238 FVLTAE 243 (792)
Q Consensus 238 LlaS~s 243 (792)
+.+++.
T Consensus 265 lwva~~ 270 (340)
T d1v04a_ 265 LWVGCH 270 (340)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 555443
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.69 E-value=9.5 Score=39.28 Aligned_cols=136 Identities=8% Similarity=0.026 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS- 175 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t- 175 (792)
.|..++|+.| .|+... ++.+..++..+-........-..++..+.++| ..++....++.+.++++.+++....
T Consensus 88 ~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~ 161 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLA 161 (381)
T ss_dssp TEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CeEEEEeeCC--EEEEEe-CCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCcccccc
Confidence 5888999744 455544 45678888766444444444456788888887 5677778899999999998754322
Q ss_pred -----eccCCCeeEEEEcCCCcEEEEEcCCeEEEE-ECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 176 -----CDFYRPIASIAFHAEGELLAVASGHKLYIW-PYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 176 -----~~h~s~V~sVafSpdG~~LasgSdd~V~IW-Dlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
+...+.+.+++|++.|+.++++.++...+- ++........ .......+.+|.|--+..++++-
T Consensus 162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~---p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 162 QNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEE---LPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHT---SCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCcceEEecCCceEEEEeCCcEEEEEeCCCceeeccCCCCccccCC---CcCCCcceeEEEEecCceEEEEE
Confidence 345677899999999998888766554432 2222211110 01124568899998766655443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=83.23 E-value=16 Score=37.05 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=70.9
Q ss_pred CeEEEEE--cC-CCC-EEEEEECCCeEEEEECC---CC----cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEE
Q 036953 97 STIAAAF--SP-DGR-TLASTHGDHTVKIIDCQ---TG----NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLW 165 (792)
Q Consensus 97 ~V~sLaf--SP-DG~-~LaSGS~DGtVrIWDl~---tg----k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLW 165 (792)
.++.+++ ++ ++. +++....+|.+..|.+. .+ +.++.|. -...+.+|.+.. ....|+.+-++.-|..+
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDd-e~~~LyisEE~~Giw~~ 206 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADD-EYGSLYIAEEDEAIWKF 206 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeC-CCCcEEEecCccceEEE
Confidence 3556665 66 455 45666778999888763 22 3445554 445788999998 77788888888777666
Q ss_pred ECCC-----CcEEEEec---cCCCeeEEEEcC--CCc-EEEEEc--CCeEEEEECCCC
Q 036953 166 DANT-----SECIGSCD---FYRPIASIAFHA--EGE-LLAVAS--GHKLYIWPYNNK 210 (792)
Q Consensus 166 Dl~t-----g~~v~t~~---h~s~V~sVafSp--dG~-~LasgS--dd~V~IWDlrt~ 210 (792)
+..- +..+.... ....+..++.-. +++ +|++++ +++..|||....
T Consensus 207 ~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 207 SAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp ESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 6542 22232221 345677777543 333 666665 566999998664
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.55 E-value=17 Score=38.84 Aligned_cols=81 Identities=9% Similarity=0.060 Sum_probs=51.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC-e
Q 036953 160 HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA-P 237 (792)
Q Consensus 160 gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~-~ 237 (792)
+.|.-+|+.+++.++.+....++.+-...-.+.+++.++ |+.++-+|.++++.+.. ........-.-+.|..+|+ +
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~--~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK--FQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSSCCCSCCEEEEETTEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEE--EECCCCccccCEEEEECCEEE
Confidence 578889999999999886555544323344666777777 66799999999996541 1122111112256677886 4
Q ss_pred EEEEE
Q 036953 238 FVLTA 242 (792)
Q Consensus 238 LlaS~ 242 (792)
+++.+
T Consensus 544 v~i~a 548 (582)
T d1flga_ 544 LGVTV 548 (582)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44444
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.31 E-value=18 Score=36.29 Aligned_cols=117 Identities=11% Similarity=0.197 Sum_probs=81.9
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEE
Q 036953 117 HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAV 196 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~Las 196 (792)
.+|.|.|+........-. -...+.-.+| ..+.|+.-+ ..++.++|+++++.++.+.....|.--.|-.+ +.|+.
T Consensus 45 ~~VvIidl~n~~~~~Rrp---i~AdsAIMhP-~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L~l 118 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRP---ISADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVAL 118 (327)
T ss_dssp EEEEEEETTSTTSCEEEE---CCCSEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSS-SEEEE
T ss_pred ceEEEEECCCCCcceecc---cchhhhhcCC-CCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCC-CEEEE
Confidence 468888987655322211 1223455688 777777665 66899999999999999988888888888644 56666
Q ss_pred EcCCeEEEEECCCCCcccCCeEEec-C----CCCeEEEEEccCCCeEEEEE
Q 036953 197 ASGHKLYIWPYNNKEEASSPIIVLK-T----RRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 197 gSdd~V~IWDlrt~~~~~~~~~~~~-h----~~sVtsVafSPdG~~LlaS~ 242 (792)
-.+..|+-|++..... |...+. | ...|..-..+++++++++.+
T Consensus 119 VT~taVYHW~~~g~s~---P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~G 166 (327)
T d1utca2 119 VTDNAVYHWSMEGESQ---PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG 166 (327)
T ss_dssp ECSSEEEEEESSSSCC---CEEEEECCGGGTTCEEEEEEECTTSCEEEEEE
T ss_pred EcCCceEEEcccCCCC---chhhhhhcccccCceEEEEEECCCCCEEEEEe
Confidence 6667799999965332 333322 2 35688888899999888765
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.10 E-value=5.8 Score=40.67 Aligned_cols=106 Identities=9% Similarity=0.074 Sum_probs=66.7
Q ss_pred CCCCcEEEEEccCCCCEEEE-EeCC----CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-C----------
Q 036953 136 HRRTPWVVRFHPLRSEILAS-GSLD----HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-G---------- 199 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaS-gS~D----gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-d---------- 199 (792)
+.-.+.+++++| ++++++- -+.+ .+++++|+.+++.+...-.......+.|.+|++.|+-.. +
T Consensus 123 ~~~~~~~~~~Sp-d~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 123 GTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp SCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred ccceecceEecC-CCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence 333445678899 7777663 3333 369999999998765332222335789999998776432 1
Q ss_pred ------CeEEEEECCCCCcccCCeEEecC--CCCeEEEEEccCCCeEEEEEe
Q 036953 200 ------HKLYIWPYNNKEEASSPIIVLKT--RRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 200 ------d~V~IWDlrt~~~~~~~~~~~~h--~~sVtsVafSPdG~~LlaS~s 243 (792)
.+|+.+.+.+..... ....... ...+..+..+++++++++...
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~ 252 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred cccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEee
Confidence 247888887765432 1222222 234677888999998887665
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=81.91 E-value=2.2 Score=46.56 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=54.4
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCe--eEEEEcCCCc-E
Q 036953 117 HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPI--ASIAFHAEGE-L 193 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V--~sVafSpdG~-~ 193 (792)
|.|.-||+.+++.+.... +..++.+-.++- .+.+++.|+.|+.++.+|.++|+.++.+.....+ .-+.|.-+|+ |
T Consensus 453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY 530 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (596)
T ss_dssp EEEEEECTTTCCEEEEEE-ESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceEEEEeCCCCceecccC-CCCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEE
Confidence 568888999999887764 222222222222 5678889999999999999999999998643332 2356666885 5
Q ss_pred EEEE
Q 036953 194 LAVA 197 (792)
Q Consensus 194 Lasg 197 (792)
+++.
T Consensus 531 vav~ 534 (596)
T d1w6sa_ 531 VAIY 534 (596)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
|