Citrus Sinensis ID: 036960

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MEILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKSGNILADSQQKIQHMFSLYYPYFVSKMVANVGCKCRQFGAAKVENQMRHRIWCCKS
Secondary Structure (PSIPRED)
ccccccccccccccEEEccccccccccHHHHccccccEEcccccccccccccccHHHcccccEEccccccccccccccccccccccccccccccccccccccccccHHccccccccEEccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHcHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHEcccccccccccHHHccHHHHcEEEccccccccccHHccHHHHHHHcEEcccccccHcHccHHHccccHHHHcHccHHHHHHHHHHHHccccEEEEEEcHHHHcccHHHHHHHHHHHHHHHHcHHHcccccccccccHHHHHHHHccHHccccEEEEEccc
Coil and Loop (DISEMBL)
meilqdigCLSLLKELNLCvndfqrlpasigslsslKRMNLvenkldnlpitisikqisplrtlelrncntlqslpklllpsypekvDTFMLESLSKLFRIITTRKLTYFIFTKCLKlnksgnilaDSQQKIQHMFSLYYPYFVSKMVANvgckcrqfGAAKVENQMRHRIWCCKS
Flexible Loop (DISEMBL)
MEILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVEnkldnlpitisikqisplrtlELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKSGNILADSQQKIQHMFSLYYPYFVSKMVANVGCKCRQFGAAKVENQMRHRIWCCKS
Low Complexity Region (SEG)
MEILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKSGNILADSQQKIQHMFSLYYPYFVSKMVANVGCKCRQFGAAKVENQMRHRIWCCKS
Disordered region (IsUnstruct)
**ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKSGNILADSQQKIQHMFSLYYPYFVSKMVANVGCKCRQFGAAKVENQMRHRIWCC**
Disordered Region (DISOPRED)
MEILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKSGNILADSQQKIQHMFSLYYPYFVSKMVANVGCKCRQFGAAKVENQMRHRIWCC**
Disordered Region (DISEMBL)
MEILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKSGNILADSQQKIQHMFSLYYPYFVSKMVANVGCKCRQFGAAKVENQMRHRIWCCKS
Disordered Region (DISPRO)
MEILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKSGNILADSQQKIQHMFSLYYPYFVSKMVANVGCKCRQFGAAKVENQMRHRIWCCKS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKSGNILADSQQKIQHMFSLYYPYFVSKMVANVGCKCRQFGAAKVENQMRHRIWCCKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q9ERV7	915	p53-induced protein with	yes	no	0.414	0.079	0.412	6e-07
Q6UWE0	723	E3 ubiquitin-protein liga	yes	no	0.403	0.098	0.405	1e-06
Q80ZI6	727	E3 ubiquitin-protein liga	no	no	0.505	0.122	0.351	2e-06
Q40392	1144	TMV resistance protein N	N/A	no	0.437	0.067	0.395	6e-06
Q9HB75	910	p53-induced protein with	no	no	0.426	0.082	0.397	3e-05
Q7XA40	992	Putative disease resistan	N/A	no	0.357	0.063	0.4	7e-05
Q7KRY7	1851	Protein lap4 OS=Drosophil	yes	no	0.659	0.062	0.362	0.0001
Q9Y4C4	1052	Malignant fibrous histioc	no	no	0.403	0.067	0.364	0.0001
O75427	683	Leucine-rich repeat and c	no	no	0.380	0.098	0.352	0.0004
Q1ZXD6	2800	Probable serine/threonine	yes	no	0.329	0.020	0.428	0.0005

>sp|Q9ERV7|PIDD_MOUSE p53-induced protein with a death domain OS=Mus musculus GN=Pidd PE=1 SV=1

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 7/80 (8%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPL 61
           E+ + +G L  L  L +  N  +RLP ++GSLS+L+R++L EN LD +P      +I  L
Sbjct: 167 ELPEALGALPALTFLTVTHNRLERLPLTLGSLSTLQRLDLSENLLDTIP-----SEIGNL 221

Query: 62  RTLELRN--CNTLQSLPKLL 79
           R+L   N   N LQSLP  L
Sbjct: 222 RSLSELNLASNRLQSLPASL 241

Promotes apoptosis downstream of the tumor suppressor as component of the DNA damage/stress response pathway that connects p53/TP53 to apoptosis. Associates with NEMO/IKBKG and RIP1 and enhances sumoylation and ubiquitination of NEMO/IKBKG which is important for activation of the transcription factor NF-kappa-B. Associates with CASP2/caspase-2 and CRADD/RAIDD, and induces activation of CASP2 which an important regulator in apoptotic pathways.
Mus musculus (taxid: 10090)

>sp|Q6UWE0|LRSM1_HUMAN E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 3/74 (4%)

Query: 6   DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
           D+G L+ L+ LN+  N   +LP SIG+L+ L+ +N+ +NKL  LP T+   ++  LRTL 
Sbjct: 99  DLGQLTALQVLNVERNQLMQLPRSIGNLTQLQTLNVKDNKLKELPDTVG--ELRSLRTLN 156

Query: 66  LRNCNTLQSLPKLL 79
           + + N +Q LP++L
Sbjct: 157 I-SGNEIQRLPQML 169

E3 ubiquitin-protein ligase that mediates monoubiquitination of TSG101 at multiple sites, leading to inactivate the ability of TSG101 to sort endocytic (EGF receptors) and exocytic (HIV-1 viral proteins) cargos.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q80ZI6|LRSM1_MOUSE E3 ubiquitin-protein ligase LRSAM1 OS=Mus musculus GN=Lrsam1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 59/94 (62%), Gaps = 5/94 (5%)

Query: 6   DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
           D+G L++L+ LN+  N    LP SIG+L  L+ +N+ +NKL  LP T+   ++  LRTL+
Sbjct: 99  DMGQLTVLQVLNVERNQLTHLPRSIGNLLQLQTLNVKDNKLKELPDTLG--ELRSLRTLD 156

Query: 66  LRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLF 99
           +   N +Q LP++L  ++   ++T  L +L+ ++
Sbjct: 157 ISE-NEIQRLPQML--AHVRTLETLSLNALAMVY 187

E3 ubiquitin-protein ligase that mediates monoubiquitination of TSG101 at multiple sites, leading to inactivate the ability of TSG101 to sort endocytic (EGF receptors) cargos.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 4/81 (4%)

Query: 26  LPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPE 85
           LP  IGSLSSLK+++L  N  ++LP   SI Q+  L++L+L++C  L  LP+L       
Sbjct: 850 LPEEIGSLSSLKKLDLSRNNFEHLP--SSIAQLGALQSLDLKDCQRLTQLPELPPELNEL 907

Query: 86  KVDTFMLESLSKLFRIITTRK 106
            VD  M  +L  +  ++T RK
Sbjct: 908 HVDCHM--ALKFIHYLVTKRK 926

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|Q9HB75|PIDD_HUMAN p53-induced protein with a death domain OS=Homo sapiens GN=PIDD PE=1 SV=2

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPL 61
           E+ + +G L  L  L +  N  Q LP ++G+LS+L+R++L +N LD LP  I    +  L
Sbjct: 162 ELPEALGALPALTFLTVTHNRLQTLPPALGALSTLQRLDLSQNLLDTLPPEIG--GLGSL 219

Query: 62  RTLELRNCNTLQSLPKLL 79
             L L + N LQSLP  L
Sbjct: 220 LELNLAS-NRLQSLPASL 236

Promotes apoptosis downstream of the tumor suppressor as component of the DNA damage/stress response pathway that connects p53/TP53 to apoptosis. Associates with NEMO/IKBKG and RIP1 and enhances sumoylation and ubiquitination of NEMO/IKBKG which is important for activation of the transcription factor NF-kappa-B. Associates with CASP2/caspase-2 and CRADD/RAIDD, and induces activation of CASP2 which an important regulator in apoptotic pathways.

Homo sapiens (taxid: 9606)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 13  LKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTL 72
           L+ LNL  ++F++LP+S+G L  L+ ++L  NK+ +LP  +   ++  L+TL+L NC +L
Sbjct: 537 LRVLNLSNSEFEQLPSSVGDLVHLRYLDLSGNKICSLPKRLC--KLQNLQTLDLYNCQSL 594

Query: 73  QSLPK 77
             LPK
Sbjct: 595 SCLPK 599

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 69/135 (51%), Gaps = 19/135 (14%)

Query: 10  LSLLKELN-LCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLEL 66
            S LK L  L +ND     LPA  GSL+ L+ + L EN L +LP TIS  Q++ L+ L+L
Sbjct: 125 FSQLKNLTVLGLNDMSLTTLPADFGSLTQLESLELRENLLKHLPETIS--QLTKLKRLDL 182

Query: 67  RNCNTLQSLPKLL--LPSYPEK-VDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKSGN 123
            + N ++ LP  L  LP   E  +D   L+ L     ++T  KLTY        L+ S N
Sbjct: 183 GD-NEIEDLPPYLGYLPGLHELWLDHNQLQRLPPELGLLT--KLTY--------LDVSEN 231

Query: 124 ILADSQQKIQHMFSL 138
            L +   +I  + SL
Sbjct: 232 RLEELPNEISGLVSL 246

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|Q9Y4C4|MFHA1_HUMAN Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 7   IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLEL 66
           +  L  L++LNL  N    LPA +G+L+ L+ +++  N+L +LP ++S   +S LRTL++
Sbjct: 131 VSALRELRKLNLSHNQLPALPAQLGALAHLEELDVSFNRLAHLPDSLSC--LSRLRTLDV 188

Query: 67  RNCNTLQSLPKLLL 80
            + N L + P+ LL
Sbjct: 189 DH-NQLTAFPRQLL 201

Homo sapiens (taxid: 9606)

>sp|O75427|LRCH4_HUMAN Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Homo sapiens GN=LRCH4 PE=1 SV=2

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 6   DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
           DIG L  L++L++  N+ Q LP+ +  LSSL+ +N+  N+L  LP  +      PL  L+
Sbjct: 154 DIGTLGSLRQLDVSSNELQSLPSELCGLSSLRDLNVRRNQLSTLPEELG---DLPLVRLD 210

Query: 66  LRNCNTLQSLP 76
             +CN +  +P
Sbjct: 211 F-SCNRVSRIP 220

Homo sapiens (taxid: 9606)

>sp|Q1ZXD6|ROCO5_DICDI Probable serine/threonine-protein kinase roco5 OS=Dictyostelium discoideum GN=roco5 PE=3 SV=1

 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 5/63 (7%)

Query: 6    DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
            +IG +S L EL+L  N  + LP  IG LSSL+ +NL  N +++LP      Q+S L TL+
Sbjct: 1147 EIGSISSLIELDLTNNRIKDLPPQIGKLSSLQTLNLSNNAIESLPW-----QLSQLTTLK 1201

Query: 66   LRN 68
            + N
Sbjct: 1202 VLN 1204

May act as a serine/threonine-protein kinase and guanine-nucleotide releasing factor.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
432095404	694	E3 ubiquitin-protein ligase LRSAM1 [Myot	0.511	0.129	0.389	2e-07
224103133	397	predicted protein [Populus trichocarpa]	0.681	0.302	0.357	2e-07
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.681	0.083	0.385	3e-07
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.693	0.082	0.375	6e-07
297794743	1184	predicted protein [Arabidopsis lyrata su	0.721	0.107	0.352	6e-07
255537139	1137	leucine-rich repeat-containing protein,	0.721	0.111	0.311	7e-07
227438275	1226	disease resistance protein [Brassica rap	0.727	0.104	0.35	9e-07
255563202	1158	leucine-rich repeat containing protein,	0.693	0.105	0.360	2e-06
432106188	635	p53-induced protein with a death domain	0.426	0.118	0.435	2e-06
73968001	728	PREDICTED: E3 ubiquitin-protein ligase L	0.505	0.122	0.382	9e-06

>gi|432095404|gb|ELK26603.1| E3 ubiquitin-protein ligase LRSAM1 [Myotis davidii]

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 62/95 (65%), Gaps = 5/95 (5%)

Query: 5   QDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTL 64
           +DIG L+ L+ LNL  N    LP SIG+L+ L+ +N+ +NKL  LP T+   ++  LRTL
Sbjct: 38  EDIGQLTALQVLNLERNQLTHLPRSIGNLTQLQTLNVKDNKLKELPDTLG--ELRSLRTL 95

Query: 65  ELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLF 99
           ++R+ N +Q LP++L  ++   ++T  L++ S +F
Sbjct: 96  DIRD-NEIQRLPQML--AHVRTLETLSLDAASMVF 127

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224103133|ref|XP_002334087.1| predicted protein [Populus trichocarpa] gi|222869543|gb|EEF06674.1| predicted protein [Populus trichocarpa]

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 6/126 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
           L  L++LNL      ++P S+G LSSL+ ++L  N L  +P  IS+ ++  L+ L LRNC
Sbjct: 56  LDCLRKLNLDGCSLSKVPGSLGRLSSLEVLDLSGNNLRTIP--ISMNKLFELQYLGLRNC 113

Query: 70  NTLQSLPKLLLPSYPEKVDTFMLESLSKLFRIITTRK--LTYFIFTKCLKLNKSGNILAD 127
             L+SLP+  LP    K+D    + L  +    T  +  +  FIFT+C +L ++  +LA 
Sbjct: 114 RRLESLPE--LPPRLSKLDAHDCQKLRTVSSSSTGVEGNIFEFIFTRCSRLRETNQMLAY 171

Query: 128 SQQKIQ 133
           S  K Q
Sbjct: 172 SLLKFQ 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 7/127 (5%)

Query: 10   LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            L  L++LNL       +P S+G LSSL+ ++L  N L  +P  ISI ++  L+ L LRNC
Sbjct: 993  LDCLRKLNLDGCSLSEVPDSLGLLSSLEVLDLSGNNLRTIP--ISINKLFELQYLGLRNC 1050

Query: 70   NTLQSLPKLLLPSYPEKVDTFMLESLSKLF---RIITTRKLTYFIFTKCLKLNKSGNILA 126
              LQSLP+  LP    K+D    +SL+ L      +    +  FIFT CL+L     IL 
Sbjct: 1051 KRLQSLPE--LPPRLSKLDVDNCQSLNYLVSRSSTVVEGNIFEFIFTNCLRLPVVNQILE 1108

Query: 127  DSQQKIQ 133
             S  K Q
Sbjct: 1109 YSLLKFQ 1115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 11/133 (8%)

Query: 10   LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            L  L++LNL       +P S+G LSSL+ ++L  N    +P+  SI ++S L+ L LRNC
Sbjct: 954  LDYLRKLNLDGCHISVVPDSLGCLSSLEVLDLSGNNFSTIPL--SINKLSELQYLGLRNC 1011

Query: 70   NTLQSLPKLLLPSYPEKVDTFMLESLSKLFRIITT---RKLTYFIFTKCLKLNKSGNILA 126
              L+SLP+  LP    K+D    ESL+ L    +T     +  FIFT CL L +   IL 
Sbjct: 1012 KRLESLPE--LPPRLSKLDADNCESLNYLGSSSSTVVKGNIFEFIFTNCLSLCRINQILP 1069

Query: 127  DSQQKIQHMFSLY 139
             + +K    F LY
Sbjct: 1070 YALKK----FRLY 1078

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794743|ref|XP_002865256.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297311091|gb|EFH41515.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 12/139 (8%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPL 61
           E+L   GC S L +L L   +  +LP +   LSS+  + L  N L+ LP +I I  +  L
Sbjct: 729 ELLPFSGC-SHLSDLYLTDCNLHKLPNNFSCLSSVHSLCLSRNNLEYLPESIKI--LHHL 785

Query: 62  RTLELRNCNTLQSLPKLLLPS---YPEKVDTFMLESLSK--LFRIITTRKLTYFIFTKCL 116
           ++L+L++C  L SLP  +LPS   Y +  D   LE+++      ++  R  + F+FT C 
Sbjct: 786 KSLDLKHCRKLNSLP--VLPSNLQYLDAHDCASLETVANPMTHLVLAERVQSTFLFTDCF 843

Query: 117 KLNKSG--NILADSQQKIQ 133
           KLN+    NI+A +Q K Q
Sbjct: 844 KLNREAQENIVAHAQLKSQ 862

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 24/151 (15%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
           L+ L++L++ V +  +LP+ +  LS + +++L  N  D LP   S K +  LR L++ +C
Sbjct: 791 LTTLEDLSVGVCNLLKLPSHMNHLSCISKLDLSGNYFDQLP---SFKYLLNLRCLDISSC 847

Query: 70  NTLQSLPKLLLPSYPEKVDTF---MLESLSKLFRIITTRKLTYF-----IFTKCLKLNKS 121
             L+SLP+  +P     +D      LE++S L +I   +    F     IFT C K+++S
Sbjct: 848 RRLRSLPE--VPHSLTDIDAHDCRSLETISGLKQIFQLKYTHTFYDKKIIFTSCFKMDES 905

Query: 122 G--NILADSQQKIQHM---------FSLYYP 141
              + LAD+Q  IQ +         FS++YP
Sbjct: 906 AWSDFLADAQFWIQKVAMRAKDEESFSIWYP 936

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227438275|gb|ACP30627.1| disease resistance protein [Brassica rapa subsp. pekinensis]

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 12/140 (8%)

Query: 1   MEILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISP 60
           +E+L   GC S L ++ L   +  +LP S   LS L+ + L  N + NLP   SIK++  
Sbjct: 837 LELLPFSGC-SRLSDMYLTDCNLYKLPDSFSCLSLLQTLCLSRNNIKNLP--GSIKKLHH 893

Query: 61  LRTLELRNCNTLQSLPKLLLPSYPEKVDT---FMLESLSK--LFRIITTRKLTYFIFTKC 115
           L++L L++C  L SLP  +LPS  + +D      LE+++K     ++  R  + F+FT C
Sbjct: 894 LKSLYLKHCQQLVSLP--VLPSNLQYLDAHGCISLETVAKPMTLLVVAERNQSTFVFTDC 951

Query: 116 LKLNKSG--NILADSQQKIQ 133
            KLN+    +I+A +Q K Q
Sbjct: 952 FKLNRDAQESIVAHTQLKSQ 971

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 14/136 (10%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
           L  L EL     +   LPA +  LSS+  +NL  +  D +P    I Q+S LR + +  C
Sbjct: 838 LKSLAELRAGGCNLSTLPADLKYLSSIVELNLSGSNFDTMP--AGINQLSKLRWINVTGC 895

Query: 70  NTLQSLPKLLLP---SYPEKVDTFMLESLS---KLFRIITTRKLT--YFIFTKCLKLNKS 121
             LQSLP+  LP    Y    D   L S+S   +LF +  +  L    F+FT C KL++ 
Sbjct: 896 KRLQSLPE--LPPRIRYLNARDCRSLVSISGLKQLFELGCSNSLDDETFVFTNCFKLDQD 953

Query: 122 --GNILADSQQKIQHM 135
              +ILA +Q KIQH 
Sbjct: 954 NWADILASAQLKIQHF 969

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|432106188|gb|ELK32081.1| p53-induced protein with a death domain [Myotis davidii]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 2  EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPL 61
          E+ + +G LS L  L+   N  Q LPA++G+LS+L+R++L EN+LD LP  +    +S L
Sbjct: 16 ELPEALGALSALTFLSATHNHLQALPAALGALSALQRLDLSENRLDTLPPEVG--GLSSL 73

Query: 62 RTLELRNCNTLQSLPKLL 79
          + L L + N LQSLP  L
Sbjct: 74 QELNLAS-NRLQSLPASL 90

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|73968001|ref|XP_548450.2| PREDICTED: E3 ubiquitin-protein ligase LRSAM1 isoform 1 [Canis lupus familiaris]

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 59/94 (62%), Gaps = 5/94 (5%)

Query: 6   DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
           DIG L+ L+ LN+  N    LP SIG+L  L+ +N+ +NKL  LP T+   ++  LRTL+
Sbjct: 99  DIGQLTALQVLNVEKNQLTYLPRSIGNLIQLQTLNMKDNKLKELPDTVG--ELRSLRTLD 156

Query: 66  LRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLF 99
           + N N +Q LP+LL  ++   ++T  L++ S ++
Sbjct: 157 ISN-NEIQRLPQLL--AHVRTLETLNLDASSMVY 187

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2122925	417	AT4G19470 [Arabidopsis thalian	0.670	0.282	0.338	1.7e-10
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.676	0.098	0.384	1.9e-10
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.795	0.114	0.326	1.1e-09
UNIPROTKB|E2RR59	728	LRSAM1 "Uncharacterized protei	0.505	0.122	0.382	4e-09
UNIPROTKB|J9P525	728	LRSAM1 "Uncharacterized protei	0.505	0.122	0.382	4e-09
RGD|1564403	727	Lrsam1 "leucine rich repeat an	0.505	0.122	0.361	8.3e-09
UNIPROTKB|Q08E63	724	LRSAM1 "Uncharacterized protei	0.505	0.122	0.361	1.3e-08
UNIPROTKB|F1RS16	723	LRSAM1 "Uncharacterized protei	0.505	0.123	0.372	1.7e-08
MGI|MGI:2684789	727	Lrsam1 "leucine rich repeat an	0.505	0.122	0.351	2.8e-08
UNIPROTKB|Q6UWE0	723	LRSAM1 "E3 ubiquitin-protein l	0.403	0.098	0.405	1.2e-07

TAIR|locus:2122925 AT4G19470 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 42/124 (33%), Positives = 68/124 (54%)

Query:    14 KELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQ 73
             +++ L   +  + P +   LSSL+ + L  N ++NLP   SIK++  L++L L+NC  L 
Sbjct:    32 RDMYLTDCNLYKFPDNFSCLSSLQSLCLSRNSIENLPG--SIKKLHHLKSLYLKNCKNLI 89

Query:    74 SLPKLLLPSYPEKVDTFMLESLSKLFRIITTRKLTY--FIFTKCLKLNKSGN--ILADSQ 129
             SLP L    Y +      LE++SK   ++   + T+  F+FT C KLN+     I+A +Q
Sbjct:    90 SLPVLPSNQYLDVHGCISLETVSKPMTLLVIAEKTHSTFVFTDCYKLNRDAQEKIVAHTQ 149

Query:   130 QKIQ 133
              K Q
Sbjct:   150 LKSQ 153

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 50/130 (38%), Positives = 74/130 (56%)

Query:    11 SLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCN 70
             S L +L L   +  +LP    SL SL+ + L  N ++ LP   SI+++  L  L+L++C 
Sbjct:   844 SFLSDLYLTNCNIDKLPDKFSSLRSLRCLCLSRNNIETLPE--SIEKLYSLLLLDLKHCC 901

Query:    71 TLQSLPKLLLPSYPEKVDTF---MLESLSKLFRI--ITTRKLTYFIFTKCLKLNKSG--N 123
              L+SLP  LLPS  + +D      LE++SK   I  +T R  T FIFT C KLN++   +
Sbjct:   902 RLKSLP--LLPSNLQYLDAHGCGSLENVSKPLTIPLVTERMHTTFIFTDCFKLNQAEKED 959

Query:   124 ILADSQQKIQ 133
             I+A +Q K Q
Sbjct:   960 IVAQAQLKSQ 969

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 51/156 (32%), Positives = 81/156 (51%)

Query:     7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLEL 66
             +GC S L +L L      +LP +IG LSSL+ + L  N ++NLP   S  Q++ L+  +L
Sbjct:   852 LGC-SRLTDLYLSRCSLYKLPDNIGGLSSLQSLCLSGNNIENLPE--SFNQLNNLKWFDL 908

Query:    67 RNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFRIITT-----RKLTYFIFTKCLKLNKS 121
             + C  L+SLP  +LP   + +D    ESL  L   +T      R  + FIF+ C KLN+ 
Sbjct:   909 KFCKMLKSLP--VLPQNLQYLDAHECESLETLANPLTPLTVGERIHSMFIFSNCYKLNQD 966

Query:   122 G--NILADSQQKIQHMFSL----YYPYFVSKMVANV 151
                +++  ++ K Q M +     YY  FV + +  +
Sbjct:   967 AQASLVGHARIKSQLMANASAKRYYRGFVPEPLVGI 1002

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

UNIPROTKB|E2RR59 LRSAM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 146 (56.5 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 36/94 (38%), Positives = 59/94 (62%)

Query:     6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
             DIG L+ L+ LN+  N    LP SIG+L  L+ +N+ +NKL  LP T+   ++  LRTL+
Sbjct:    99 DIGQLTALQVLNVEKNQLTYLPRSIGNLIQLQTLNMKDNKLKELPDTVG--ELRSLRTLD 156

Query:    66 LRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLF 99
             + N N +Q LP+LL  ++   ++T  L++ S ++
Sbjct:   157 ISN-NEIQRLPQLL--AHVRTLETLNLDASSMVY 187

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9P525 LRSAM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 146 (56.5 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 36/94 (38%), Positives = 59/94 (62%)

Query:     6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
             DIG L+ L+ LN+  N    LP SIG+L  L+ +N+ +NKL  LP T+   ++  LRTL+
Sbjct:    99 DIGQLTALQVLNVEKNQLTYLPRSIGNLIQLQTLNMKDNKLKELPDTVG--ELRSLRTLD 156

Query:    66 LRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLF 99
             + N N +Q LP+LL  ++   ++T  L++ S ++
Sbjct:   157 ISN-NEIQRLPQLL--AHVRTLETLNLDASSMVY 187

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1564403 Lrsam1 "leucine rich repeat and sterile alpha motif containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 143 (55.4 bits), Expect = 8.3e-09, P = 8.3e-09
 Identities = 34/94 (36%), Positives = 59/94 (62%)

Query:     6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
             DIG L+ L+ LN+  N    LP S+G+L  L+ +N+ +NKL  LP T+   ++  LRTL+
Sbjct:    99 DIGQLTALQVLNVERNQLTHLPRSVGNLLQLQTLNVKDNKLKELPDTLG--ELRSLRTLD 156

Query:    66 LRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLF 99
             +   N +Q LP++L  ++   ++T  L++LS ++
Sbjct:   157 ISE-NEIQRLPQML--AHVRTLETLSLDALSMVY 187

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030163 "protein catabolic process" evidence=ISO

GO:0044425 "membrane part" evidence=ISO

GO:0045806 "negative regulation of endocytosis" evidence=ISO

GO:0046755 "non-lytic virus budding" evidence=ISO

GO:0051865 "protein autoubiquitination" evidence=ISO

GO:0070086 "ubiquitin-dependent endocytosis" evidence=ISO

UNIPROTKB|Q08E63 LRSAM1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 34/94 (36%), Positives = 59/94 (62%)

Query:     6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
             DIG L+ L+ LN+  N    LP SIG+L  L+ +N+ +N+L  LP T+   ++  LRTL+
Sbjct:    99 DIGQLTALQVLNMERNQLTYLPRSIGNLIQLQTLNVKDNRLKELPDTLG--ELRSLRTLD 156

Query:    66 LRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLF 99
             +   N +Q LP++L  ++   ++T  L++LS ++
Sbjct:   157 ISE-NEIQRLPRML--AHVRTLETLSLDALSMVY 187

GO:0005737 "cytoplasm" evidence=ISS

GO:0046755 "non-lytic virus budding" evidence=ISS

GO:0044425 "membrane part" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0070086 "ubiquitin-dependent endocytosis" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

GO:0045806 "negative regulation of endocytosis" evidence=ISS

GO:0030163 "protein catabolic process" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1RS16 LRSAM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 140 (54.3 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 35/94 (37%), Positives = 59/94 (62%)

Query:     6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
             DIG L+ L+ LN+  N    LP SIG+L  L+ +NL +NKL  LP T+   ++  LRTL+
Sbjct:    99 DIGQLTALQVLNVERNQLTSLPRSIGNLIQLQTLNLKDNKLKELPDTLG--ELRSLRTLD 156

Query:    66 LRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLF 99
             + + N +Q LP++L  ++   ++T  L++ S ++
Sbjct:   157 ISD-NKVQRLPQML--AHVRTLETLSLDASSMVY 187

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2684789 Lrsam1 "leucine rich repeat and sterile alpha motif containing 1" [Mus musculus (taxid:10090)]

 Score = 138 (53.6 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 33/94 (35%), Positives = 59/94 (62%)

Query:     6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
             D+G L++L+ LN+  N    LP SIG+L  L+ +N+ +NKL  LP T+   ++  LRTL+
Sbjct:    99 DMGQLTVLQVLNVERNQLTHLPRSIGNLLQLQTLNVKDNKLKELPDTLG--ELRSLRTLD 156

Query:    66 LRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLF 99
             +   N +Q LP++L  ++   ++T  L +L+ ++
Sbjct:   157 ISE-NEIQRLPQML--AHVRTLETLSLNALAMVY 187

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=ISO

GO:0044425 "membrane part" evidence=ISO

GO:0045806 "negative regulation of endocytosis" evidence=ISO

GO:0046755 "non-lytic virus budding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=ISO

GO:0070086 "ubiquitin-dependent endocytosis" evidence=ISO

UNIPROTKB|Q6UWE0 LRSAM1 "E3 ubiquitin-protein ligase LRSAM1" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 30/74 (40%), Positives = 48/74 (64%)

Query:     6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
             D+G L+ L+ LN+  N   +LP SIG+L+ L+ +N+ +NKL  LP T+   ++  LRTL 
Sbjct:    99 DLGQLTALQVLNVERNQLMQLPRSIGNLTQLQTLNVKDNKLKELPDTVG--ELRSLRTLN 156

Query:    66 LRNCNTLQSLPKLL 79
             +   N +Q LP++L
Sbjct:   157 ISG-NEIQRLPQML 169

GO:0005179 "hormone activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0070086 "ubiquitin-dependent endocytosis" evidence=IDA

GO:0044425 "membrane part" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0045806 "negative regulation of endocytosis" evidence=IMP

GO:0046755 "non-lytic virus budding" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0030163 "protein catabolic process" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQ-RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISP 60
           EI  +IG L+ L  L+L  N+    +P+S+G+L +L+ + L +NKL   PI  SI  +  
Sbjct: 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-PIPPSIFSLQK 285

Query: 61  LRTLELRNCNTLQSLPKLLL 80
           L +L+L + +    +P+L++
Sbjct: 286 LISLDLSDNSLSGEIPELVI 305

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 6   DIGCLSLLKELNLCVNDFQ-RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTL 64
           DI  L  L+ +NL  N  +  +P S+GS++SL+ ++L  N  +   I  S+ Q++ LR L
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRIL 495

Query: 65  ELRNCNTL 72
            L N N+L
Sbjct: 496 NL-NGNSL 502

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.1
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.03
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.93
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.9
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.89
PLN03150	623	hypothetical protein; Provisional	98.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.83
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.71
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.67
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.67
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.67
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.66
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.63
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.62
PLN03150	623	hypothetical protein; Provisional	98.58
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.57
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.57
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.5
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.49
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.45
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.45
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.3
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.27
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.24
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.06
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.04
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.95
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.61
PRK15386	426	type III secretion protein GogB; Provisional	97.56
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.55
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.52
PRK15386	426	type III secretion protein GogB; Provisional	97.36
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.26
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.13
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.04
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.0
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.86
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.53
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.41
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.24
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.15
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.77
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.59
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.23
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.13
smart00370	26	LRR Leucine-rich repeats, outliers.	95.13
smart00370	26	LRR Leucine-rich repeats, outliers.	95.07
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.07
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.78
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.75
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.32
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.22
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.35
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.04
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.33
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.87
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	90.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	89.58
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	89.57
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	87.05
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	86.48
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.47
KOG3864	221	consensus Uncharacterized conserved protein [Funct	80.1

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.10  E-value=2e-11  Score=90.93  Aligned_cols=109  Identities=27%  Similarity=0.291  Sum_probs=74.1

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCC--CCCchhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTL--QSLPKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l--~~lP~~l   79 (176)
                      .+|+.+..+.+|+.|++++|+|+++|.+++.+++|+.|++.-|++..+|..|+  .++.|+.||+.. |++  ..+|..+
T Consensus        47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg--s~p~levldlty-nnl~e~~lpgnf  123 (264)
T KOG0617|consen   47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG--SFPALEVLDLTY-NNLNENSLPGNF  123 (264)
T ss_pred             ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC--CCchhhhhhccc-cccccccCCcch
Confidence            46777777888888888888888888888888888888888888777888888  788888888877 777  4567554


Q ss_pred             hc--CccceeeccCCcCCcccccc-cCCCCccEEEeeCC
Q 036960           80 LP--SYPEKVDTFMLESLSKLFRI-ITTRKLTYFIFTKC  115 (176)
Q Consensus        80 ~~--~L~~~L~l~~~~~L~~l~~~-~~~~~l~~l~~~~c  115 (176)
                      +.  .| +.|++++. ..+.+|.. ....+++.+.+...
T Consensus       124 f~m~tl-ralyl~dn-dfe~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  124 FYMTTL-RALYLGDN-DFEILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             hHHHHH-HHHHhcCC-CcccCChhhhhhcceeEEeeccC
Confidence            43  45 55555543 34555332 23445555555443

>PLN03210 Resistant to P

Probab=99.03  E-value=1.1e-09  Score=102.95  Aligned_cols=114  Identities=25%  Similarity=0.357  Sum_probs=86.8

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCC-CcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENK-LDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~-l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      +|..+ ...+|+.|++.+|+++.+|.++..+++|+.|+++++. ++.+|. +.  .+++|+.|++++|+.+..+|..+..
T Consensus       604 lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls--~l~~Le~L~L~~c~~L~~lp~si~~  679 (1153)
T PLN03210        604 MPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS--MATNLETLKLSDCSSLVELPSSIQY  679 (1153)
T ss_pred             CCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cc--cCCcccEEEecCCCCccccchhhhc
Confidence            45554 3567888888888888888778888888888888764 667774 66  7888888888888888888876654


Q ss_pred             --CccceeeccCCcCCcccccccCCCCccEEEeeCCcCcccc
Q 036960           82 --SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKS  121 (176)
Q Consensus        82 --~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~~l~~~  121 (176)
                        +| +.|++.+|..++.+|.......++.+.+++|..+...
T Consensus       680 L~~L-~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~  720 (1153)
T PLN03210        680 LNKL-EDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF  720 (1153)
T ss_pred             cCCC-CEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc
Confidence              77 8888888888888876666677888888888766543

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.03  E-value=2.1e-10  Score=71.26  Aligned_cols=59  Identities=34%  Similarity=0.597  Sum_probs=53.2

Q ss_pred             CCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCC
Q 036960           11 SLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTL   72 (176)
Q Consensus        11 ~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l   72 (176)
                      ++|++|++++|+|+.+|. .|..+++|++|++++|.++.+|. .|.  ++++|++|++++ |++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~--~l~~L~~L~l~~-N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFS--NLPNLRYLDLSN-NNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTT--TSTTESEEEETS-SSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHc--CCCCCCEEeCcC-CcC
Confidence            478999999999999886 78999999999999999998865 588  999999999999 764

...

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.93  E-value=2.2e-09  Score=98.89  Aligned_cols=86  Identities=31%  Similarity=0.421  Sum_probs=52.9

Q ss_pred             cCccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCC-CCchhh
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQ-SLPKLL   79 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~-~lP~~l   79 (176)
                      +|..++.+++|++|++++|.+.+ +|..++.+++|++|++++|.+. .+|..++  ++++|+.|++++ |.+. .+|..+
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~-n~l~~~~p~~l  232 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG--QMKSLKWIYLGY-NNLSGEIPYEI  232 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc--CcCCccEEECcC-CccCCcCChhH
Confidence            45566666666666666666654 6666666666666666666655 5566666  666666666666 5443 455544


Q ss_pred             hc--CccceeeccCC
Q 036960           80 LP--SYPEKVDTFML   92 (176)
Q Consensus        80 ~~--~L~~~L~l~~~   92 (176)
                      ..  +| ++|+++++
T Consensus       233 ~~l~~L-~~L~L~~n  246 (968)
T PLN00113        233 GGLTSL-NHLDLVYN  246 (968)
T ss_pred             hcCCCC-CEEECcCc
Confidence            43  55 56665544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.90  E-value=7.9e-11  Score=87.76  Aligned_cols=94  Identities=31%  Similarity=0.450  Sum_probs=58.2

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCc--c-----------------------cCcccccc
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLD--N-----------------------LPITISIK   56 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~--~-----------------------lP~~~~~~   56 (176)
                      ++|.+++.+++|+.|++.-|.+..+|..||.++-|+.||+.+|++.  .                       +|..++  
T Consensus        70 ~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg--  147 (264)
T KOG0617|consen   70 ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVG--  147 (264)
T ss_pred             hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhh--
Confidence            4677777777777777777777777777777777777777776655  3                       444555  


Q ss_pred             cCCccceeeccccCCCCCCchhhhc--CccceeeccCCcCCccccc
Q 036960           57 QISPLRTLELRNCNTLQSLPKLLLP--SYPEKVDTFMLESLSKLFR  100 (176)
Q Consensus        57 ~l~~L~~L~l~~cn~l~~lP~~l~~--~L~~~L~l~~~~~L~~l~~  100 (176)
                      ++++|+.|.+.. |.+-++|.+++.  .| +.|.+.+. .|..+|.
T Consensus       148 ~lt~lqil~lrd-ndll~lpkeig~lt~l-relhiqgn-rl~vlpp  190 (264)
T KOG0617|consen  148 KLTNLQILSLRD-NDLLSLPKEIGDLTRL-RELHIQGN-RLTVLPP  190 (264)
T ss_pred             hhcceeEEeecc-CchhhCcHHHHHHHHH-HHHhcccc-eeeecCh
Confidence            555555555555 555555555543  34 44445442 4444433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.89  E-value=1.4e-10  Score=95.88  Aligned_cols=108  Identities=27%  Similarity=0.381  Sum_probs=84.9

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      ++|+++++|.+|..|++..|+|..+| +|+++..|.+++++.|+|+.+|.... ++++++.+||+.. |+++++|+++..
T Consensus       197 tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~-~~L~~l~vLDLRd-Nklke~Pde~cl  273 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHL-KHLNSLLVLDLRD-NKLKEVPDEICL  273 (565)
T ss_pred             cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHh-cccccceeeeccc-cccccCchHHHH
Confidence            58888999999999999999998888 78888888888888888888887643 2888999999999 999999988875


Q ss_pred             --CccceeeccCCcCCcccccccCCCCccEEEeeC
Q 036960           82 --SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTK  114 (176)
Q Consensus        82 --~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~  114 (176)
                        +| ++||+++. .++.+|...++..++.+.+.+
T Consensus       274 LrsL-~rLDlSNN-~is~Lp~sLgnlhL~~L~leG  306 (565)
T KOG0472|consen  274 LRSL-ERLDLSNN-DISSLPYSLGNLHLKFLALEG  306 (565)
T ss_pred             hhhh-hhhcccCC-ccccCCcccccceeeehhhcC
Confidence              78 88898764 577775555444444444443

>PLN03150 hypothetical protein; Provisional

Probab=98.88  E-value=3.4e-09  Score=93.84  Aligned_cols=75  Identities=35%  Similarity=0.583  Sum_probs=54.9

Q ss_pred             cCccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCC-CCCchhh
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTL-QSLPKLL   79 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l-~~lP~~l   79 (176)
                      +|+.++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|+++ .+|+.++  ++++|+.|++++ |.+ ..+|..+
T Consensus       434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~--~L~~L~~L~Ls~-N~l~g~iP~~l  510 (623)
T PLN03150        434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG--QLTSLRILNLNG-NSLSGRVPAAL  510 (623)
T ss_pred             CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh--cCCCCCEEECcC-CcccccCChHH
Confidence            56677777777777777777765 7777777777777777777777 6677777  777777777777 666 4677655


Q ss_pred             h
Q 036960           80 L   80 (176)
Q Consensus        80 ~   80 (176)
                      .
T Consensus       511 ~  511 (623)
T PLN03150        511 G  511 (623)
T ss_pred             h
Confidence            4

>PLN03210 Resistant to P

Probab=98.87  E-value=8.5e-09  Score=96.92  Aligned_cols=92  Identities=28%  Similarity=0.425  Sum_probs=52.2

Q ss_pred             ccCccccCCCCCcEEeccCC-CCccccccccCCCCCcE---------------------EEeeCCCCcccCcccccccCC
Q 036960            2 EILQDIGCLSLLKELNLCVN-DFQRLPASIGSLSSLKR---------------------MNLVENKLDNLPITISIKQIS   59 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~---------------------L~l~~n~l~~lP~~~~~~~l~   59 (176)
                      ++|.+++++++|+.|++++| .++.+|..+ .+++|+.                     |++++|.|+.+|.++.  .++
T Consensus       793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~--~l~  869 (1153)
T PLN03210        793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIE--KFS  869 (1153)
T ss_pred             ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHh--cCC
Confidence            36777777888888888776 566676544 3344444                     4444444445555555  555


Q ss_pred             ccceeeccccCCCCCCchhhhc--CccceeeccCCcCCcc
Q 036960           60 PLRTLELRNCNTLQSLPKLLLP--SYPEKVDTFMLESLSK   97 (176)
Q Consensus        60 ~L~~L~l~~cn~l~~lP~~l~~--~L~~~L~l~~~~~L~~   97 (176)
                      +|+.|++++|++++.+|..+..  +| +.+++.+|.+|..
T Consensus       870 ~L~~L~L~~C~~L~~l~~~~~~L~~L-~~L~l~~C~~L~~  908 (1153)
T PLN03210        870 NLSFLDMNGCNNLQRVSLNISKLKHL-ETVDFSDCGALTE  908 (1153)
T ss_pred             CCCEEECCCCCCcCccCcccccccCC-CeeecCCCccccc
Confidence            5555555555555555543332  44 5555555555543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.86  E-value=5e-09  Score=96.57  Aligned_cols=86  Identities=27%  Similarity=0.391  Sum_probs=51.9

Q ss_pred             cCccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCC-CCCchhh
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTL-QSLPKLL   79 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l-~~lP~~l   79 (176)
                      +|..++++++|++|++++|.+++ +|..++.+++|++|++++|.+. .+|..++  ++++|++|++++ |.+ ..+|..+
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~-n~l~~~~p~~l  256 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVY-NNLTGPIPSSL  256 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh--cCCCCCEEECcC-ceeccccChhH
Confidence            56666666677777776666654 5666666666666666666665 5566666  666666666666 444 3455444


Q ss_pred             hc--CccceeeccCC
Q 036960           80 LP--SYPEKVDTFML   92 (176)
Q Consensus        80 ~~--~L~~~L~l~~~   92 (176)
                      ..  +| ++|+++++
T Consensus       257 ~~l~~L-~~L~L~~n  270 (968)
T PLN00113        257 GNLKNL-QYLFLYQN  270 (968)
T ss_pred             hCCCCC-CEEECcCC
Confidence            32  45 55555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.84  E-value=6.5e-10  Score=96.55  Aligned_cols=116  Identities=23%  Similarity=0.258  Sum_probs=75.9

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCC--CCCchhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTL--QSLPKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l--~~lP~~l   79 (176)
                      .+|+.+.++.+|+.|+|++|+|+++.-..+.+.+|++|+++.|+++.+|..+.  +|++|+.|.+.+ |++  ..||.++
T Consensus       236 ~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avc--KL~kL~kLy~n~-NkL~FeGiPSGI  312 (1255)
T KOG0444|consen  236 IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVC--KLTKLTKLYANN-NKLTFEGIPSGI  312 (1255)
T ss_pred             cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHh--hhHHHHHHHhcc-CcccccCCccch
Confidence            35666777777777777777777776667777777777777777777777776  777777766666 655  4566655


Q ss_pred             hc-------------------------CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCccccc
Q 036960           80 LP-------------------------SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKLNKSG  122 (176)
Q Consensus        80 ~~-------------------------~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l~~~~  122 (176)
                      +.                         .| +.|.+ +++.|-++|+.+ ....+..+++...++|.-.+
T Consensus       313 GKL~~Levf~aanN~LElVPEglcRC~kL-~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  313 GKLIQLEVFHAANNKLELVPEGLCRCVKL-QKLKL-DHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhhhhhHHHHhhccccccCchhhhhhHHH-HHhcc-cccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence            43                         22 33333 344555665544 34567778888888875433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.83  E-value=1.1e-09  Score=95.11  Aligned_cols=87  Identities=24%  Similarity=0.306  Sum_probs=71.7

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      -||+.|..+..|..|+|++|+++++|..+..-+++-.|+|++|+|..||.. +.  +|+-|-.||+++ |++..+|+.+-
T Consensus        94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi--nLtDLLfLDLS~-NrLe~LPPQ~R  170 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFI--NLTDLLFLDLSN-NRLEMLPPQIR  170 (1255)
T ss_pred             CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHH--hhHhHhhhcccc-chhhhcCHHHH
Confidence            378888899999999999999999998888888889999999999999887 45  888888999999 99999987665


Q ss_pred             c--CccceeeccCC
Q 036960           81 P--SYPEKVDTFML   92 (176)
Q Consensus        81 ~--~L~~~L~l~~~   92 (176)
                      .  .| ++|++++.
T Consensus       171 RL~~L-qtL~Ls~N  183 (1255)
T KOG0444|consen  171 RLSML-QTLKLSNN  183 (1255)
T ss_pred             HHhhh-hhhhcCCC
Confidence            4  45 56665543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.71  E-value=2.9e-09  Score=95.40  Aligned_cols=111  Identities=28%  Similarity=0.387  Sum_probs=91.0

Q ss_pred             ccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--
Q 036960            5 QDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--   81 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--   81 (176)
                      +-+.++++|+.|+|++|+|..+|. .+.+|..|++|+||||+++++|..+.  .+..|++|...+ |.+..+| ++..  
T Consensus       377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva--~~~~L~tL~ahs-N~l~~fP-e~~~l~  452 (1081)
T KOG0618|consen  377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVA--NLGRLHTLRAHS-NQLLSFP-ELAQLP  452 (1081)
T ss_pred             hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHH--hhhhhHHHhhcC-Cceeech-hhhhcC
Confidence            346788999999999999999998 67899999999999999999999898  999999999999 9999999 4443  


Q ss_pred             CccceeeccCCcCCccc--ccccCCCCccEEEeeCCcCcccc
Q 036960           82 SYPEKVDTFMLESLSKL--FRIITTRKLTYFIFTKCLKLNKS  121 (176)
Q Consensus        82 ~L~~~L~l~~~~~L~~l--~~~~~~~~l~~l~~~~c~~l~~~  121 (176)
                      .| +.+|++ |+.|+.+  +......+++.|++++...+.-.
T Consensus       453 qL-~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d  492 (1081)
T KOG0618|consen  453 QL-KVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRLVFD  492 (1081)
T ss_pred             cc-eEEecc-cchhhhhhhhhhCCCcccceeeccCCcccccc
Confidence            77 889995 5567654  22222368999999988876443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.67  E-value=3.5e-08  Score=74.08  Aligned_cols=104  Identities=24%  Similarity=0.323  Sum_probs=34.3

Q ss_pred             cCCCCCcEEeccCCCCcccccccc-CCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh---cCc
Q 036960            8 GCLSLLKELNLCVNDFQRLPASIG-SLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL---PSY   83 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~---~~L   83 (176)
                      .+..++++|+|++|.|+.+. .++ .+.+|+.|++++|.|+.++ .+.  .+++|+.|++++ |.++.+++.+.   ++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~--~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLP--GLPRLKTLDLSN-NRISSISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-T------TT--EEE--S-S---S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-Ccc--ChhhhhhcccCC-CCCCccccchHHhCCcC
Confidence            34456888999999998874 566 5788999999999999885 577  889999999999 99998875442   478


Q ss_pred             cceeeccCCcCCccc---ccccCCCCccEEEeeCCcCc
Q 036960           84 PEKVDTFMLESLSKL---FRIITTRKLTYFIFTKCLKL  118 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l---~~~~~~~~l~~l~~~~c~~l  118 (176)
                       ++|++++. .+..+   .......+++.+++.+++--
T Consensus        91 -~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   91 -QELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             -CEEECcCC-cCCChHHhHHHHcCCCcceeeccCCccc
Confidence             88888654 34433   22224566777777766543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.67  E-value=7.1e-08  Score=86.86  Aligned_cols=101  Identities=24%  Similarity=0.385  Sum_probs=72.4

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcC
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPS   82 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~   82 (176)
                      +|..+.  ++|+.|++++|+|+.+|..+.  .+|++|++++|+++.+|..+.    .+|+.|++++ |.+..+|..++.+
T Consensus       193 LP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~----~~L~~L~Ls~-N~L~~LP~~l~s~  263 (754)
T PRK15370        193 IPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP----DTIQEMELSI-NRITELPERLPSA  263 (754)
T ss_pred             CCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh----ccccEEECcC-CccCcCChhHhCC
Confidence            555442  468888888888888887654  478888888888888886544    3678888888 7788888777777


Q ss_pred             ccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           83 YPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        83 L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                      | +.|++++ .++..+|+... ..++.|++++|
T Consensus       264 L-~~L~Ls~-N~L~~LP~~l~-~sL~~L~Ls~N  293 (754)
T PRK15370        264 L-QSLDLFH-NKISCLPENLP-EELRYLSVYDN  293 (754)
T ss_pred             C-CEEECcC-CccCccccccC-CCCcEEECCCC
Confidence            7 8888864 46776654332 35677777665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.67  E-value=2.4e-08  Score=74.95  Aligned_cols=84  Identities=25%  Similarity=0.417  Sum_probs=37.5

Q ss_pred             cccc-CCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCccc-ccccCCccceeeccccCCCCCCch--hh-
Q 036960            5 QDIG-CLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITI-SIKQISPLRTLELRNCNTLQSLPK--LL-   79 (176)
Q Consensus         5 ~~l~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~-~~~~l~~L~~L~l~~cn~l~~lP~--~l-   79 (176)
                      +.++ .+.+|+.|++++|.|+.++ .+..++.|++|++++|+|+.+++.+ .  .+++|+.|++++ |++..+-+  .+ 
T Consensus        35 e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~--~lp~L~~L~L~~-N~I~~l~~l~~L~  110 (175)
T PF14580_consen   35 ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK--NLPNLQELYLSN-NKISDLNELEPLS  110 (175)
T ss_dssp             -S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHH--H-TT--EEE-TT-S---SCCCCGGGG
T ss_pred             cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHH--hCCcCCEEECcC-CcCCChHHhHHHH
Confidence            3455 5789999999999999986 7888999999999999999997655 4  689999999999 99987753  11 


Q ss_pred             -hcCccceeeccCCc
Q 036960           80 -LPSYPEKVDTFMLE   93 (176)
Q Consensus        80 -~~~L~~~L~l~~~~   93 (176)
                       .++| +.|++.+++
T Consensus       111 ~l~~L-~~L~L~~NP  124 (175)
T PF14580_consen  111 SLPKL-RVLSLEGNP  124 (175)
T ss_dssp             G-TT---EEE-TT-G
T ss_pred             cCCCc-ceeeccCCc
Confidence             1256 666666553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.66  E-value=2.6e-08  Score=57.90  Aligned_cols=40  Identities=30%  Similarity=0.570  Sum_probs=25.3

Q ss_pred             CCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccC
Q 036960           11 SLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLP   50 (176)
Q Consensus        11 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP   50 (176)
                      ++|++|++++|+|+.+|..++.+++|++|++++|+|+.+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            3566677777777776666667777777777777666554

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.63  E-value=6.4e-09  Score=89.24  Aligned_cols=113  Identities=29%  Similarity=0.375  Sum_probs=75.8

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      .||..+.++..|.+|+++.|++..+|..+..++ |+.|.+++|+++.+|+.++  .+..|..|+.+. |.+..+|..+..
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig--~~~tl~~ld~s~-nei~slpsql~~  187 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIG--LLPTLAHLDVSK-NEIQSLPSQLGY  187 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccc--cchhHHHhhhhh-hhhhhchHHhhh
Confidence            477777778888888888888777777777776 7777777777777777777  777777777777 777777766654


Q ss_pred             --CccceeeccCCcCCcccccccCCCCccEEEeeCCcCcccc
Q 036960           82 --SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKS  121 (176)
Q Consensus        82 --~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~~l~~~  121 (176)
                        +| +.|.+... .+..+|......++..|+|+ |.++...
T Consensus       188 l~sl-r~l~vrRn-~l~~lp~El~~LpLi~lDfS-cNkis~i  226 (722)
T KOG0532|consen  188 LTSL-RDLNVRRN-HLEDLPEELCSLPLIRLDFS-CNKISYL  226 (722)
T ss_pred             HHHH-HHHHHhhh-hhhhCCHHHhCCceeeeecc-cCceeec
Confidence              44 45544432 34455554445555666665 3444333

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.62  E-value=1.2e-08  Score=84.61  Aligned_cols=111  Identities=24%  Similarity=0.278  Sum_probs=88.0

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchh-hhc
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKL-LLP   81 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~-l~~   81 (176)
                      +|-.++.+++|..|+|++|-+.++|.+++.+..|++|+++.|++..+|+.+.  .+..++++-.++ |+++++|+. +..
T Consensus       427 v~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y--~lq~lEtllas~-nqi~~vd~~~l~n  503 (565)
T KOG0472|consen  427 VPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLY--ELQTLETLLASN-NQIGSVDPSGLKN  503 (565)
T ss_pred             chHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHh--hHHHHHHHHhcc-ccccccChHHhhh
Confidence            3556788899999999999999999999999999999999999999998777  777788887788 888888865 332


Q ss_pred             --CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCc
Q 036960           82 --SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKL  118 (176)
Q Consensus        82 --~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l  118 (176)
                        +| ..||+.+. .++.+|... ...+++.+.+++.+.-
T Consensus       504 m~nL-~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  504 MRNL-TTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhc-ceeccCCC-chhhCChhhccccceeEEEecCCccC
Confidence              77 78888654 677776655 4467888888876544

>PLN03150 hypothetical protein; Provisional

Probab=98.58  E-value=1.5e-07  Score=83.45  Aligned_cols=101  Identities=23%  Similarity=0.334  Sum_probs=79.4

Q ss_pred             CCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCC-CCchhhhc--Cccce
Q 036960           12 LLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQ-SLPKLLLP--SYPEK   86 (176)
Q Consensus        12 ~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~-~lP~~l~~--~L~~~   86 (176)
                      .++.|+|++|.+++ +|..++.+++|+.|+|++|.+. .+|..++  .+++|+.|++++ |.+. .+|+.+..  +| +.
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~--~l~~L~~LdLs~-N~lsg~iP~~l~~L~~L-~~  494 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG--SITSLEVLDLSY-NSFNGSIPESLGQLTSL-RI  494 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh--CCCCCCEEECCC-CCCCCCCchHHhcCCCC-CE
Confidence            37789999999987 8999999999999999999998 8999999  999999999999 8885 78877765  88 99


Q ss_pred             eeccCCcCCcccccccCC--CCccEEEeeCCc
Q 036960           87 VDTFMLESLSKLFRIITT--RKLTYFIFTKCL  116 (176)
Q Consensus        87 L~l~~~~~L~~l~~~~~~--~~l~~l~~~~c~  116 (176)
                      |+++++.--..+|.....  ..+..+.+.++.
T Consensus       495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EECcCCcccccCChHHhhccccCceEEecCCc
Confidence            999877533355443322  233455555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.57  E-value=7.7e-08  Score=86.64  Aligned_cols=98  Identities=24%  Similarity=0.368  Sum_probs=51.5

Q ss_pred             CCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCccccc-----------------ccCCccceeeccccCCCCC
Q 036960           12 LLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISI-----------------KQISPLRTLELRNCNTLQS   74 (176)
Q Consensus        12 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~-----------------~~l~~L~~L~l~~cn~l~~   74 (176)
                      +|+.|++++|+|+.+|..+.  .+|+.|++++|+++.+|..+..                 .-.++|+.|++++ |.++.
T Consensus       263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~-N~Lt~  339 (754)
T PRK15370        263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGE-NALTS  339 (754)
T ss_pred             CCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccC-Ccccc
Confidence            45666666666666555443  3566666666666655542210                 0112455555555 55555


Q ss_pred             CchhhhcCccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           75 LPKLLLPSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        75 lP~~l~~~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                      +|..++++| +.|+++++ .+..+|... ...++.+++++|
T Consensus       340 LP~~l~~sL-~~L~Ls~N-~L~~LP~~l-p~~L~~LdLs~N  377 (754)
T PRK15370        340 LPASLPPEL-QVLDVSKN-QITVLPETL-PPTITTLDVSRN  377 (754)
T ss_pred             CChhhcCcc-cEEECCCC-CCCcCChhh-cCCcCEEECCCC
Confidence            555555555 66666554 344443322 245666777665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.57  E-value=9.5e-09  Score=88.62  Aligned_cols=81  Identities=27%  Similarity=0.306  Sum_probs=57.4

Q ss_pred             cccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhc--
Q 036960            6 DIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLP--   81 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--   81 (176)
                      ++.+|+.|+.|++++|.|.. -++++...++|++|+|++|+|+++++. |.  .|..|+.|.|++ |+++.+.++.+.  
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~--~L~~Le~LnLs~-Nsi~~l~e~af~~l  364 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR--VLSQLEELNLSH-NSIDHLAEGAFVGL  364 (873)
T ss_pred             cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH--HHHHhhhhcccc-cchHHHHhhHHHHh
Confidence            46677777777777777777 355677777788888888888877654 66  677777777777 777777665543  


Q ss_pred             -Cccceeecc
Q 036960           82 -SYPEKVDTF   90 (176)
Q Consensus        82 -~L~~~L~l~   90 (176)
                       +| +.||++
T Consensus       365 ssL-~~LdLr  373 (873)
T KOG4194|consen  365 SSL-HKLDLR  373 (873)
T ss_pred             hhh-hhhcCc
Confidence             56 666664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.50  E-value=9.7e-08  Score=55.43  Aligned_cols=40  Identities=30%  Similarity=0.606  Sum_probs=35.8

Q ss_pred             CCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960           34 SSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus        34 ~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      ++|++|++++|+|+.+|..++  +|++|+.|++++ |.++.+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~--~l~~L~~L~l~~-N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELS--NLPNLETLNLSN-NPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGT--TCTTSSEEEETS-SCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHh--CCCCCCEEEecC-CCCCCCc
Confidence            479999999999999998899  999999999999 9999887

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.49  E-value=9.8e-08  Score=59.05  Aligned_cols=55  Identities=31%  Similarity=0.472  Sum_probs=45.8

Q ss_pred             CCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc---CccceeeccCC
Q 036960           34 SSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP---SYPEKVDTFML   92 (176)
Q Consensus        34 ~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~---~L~~~L~l~~~   92 (176)
                      ++|++|++++|+|+.+|. .|.  ++++|++|++++ |.++.+|+..+.   +| ++|+++++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~--~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L-~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFS--NLPNLETLDLSN-NNLTSIPPDAFSNLPNL-RYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTT--TGTTESEEEETS-SSESEEETTTTTTSTTE-SEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHc--CCCCCCEeEccC-CccCccCHHHHcCCCCC-CEEeCcCC
Confidence            478999999999999986 578  999999999999 999999976654   55 66666554

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.45  E-value=3.6e-08  Score=84.72  Aligned_cols=106  Identities=26%  Similarity=0.416  Sum_probs=85.1

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP-   81 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-   81 (176)
                      +|..++.++ |+.|-+++|+++.+|..++.+..|..||.+.|.|..+|..++  ++.+|+.|.+.. |.+..+|+++.. 
T Consensus       136 lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~--~l~slr~l~vrR-n~l~~lp~El~~L  211 (722)
T KOG0532|consen  136 LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLG--YLTSLRDLNVRR-NHLEDLPEELCSL  211 (722)
T ss_pred             CChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhh--hHHHHHHHHHhh-hhhhhCCHHHhCC
Confidence            566776665 889999999999999999998999999999999999999999  999999999999 999999988875 


Q ss_pred             CccceeeccCCcCCccccccc-CCCCccEEEeeC
Q 036960           82 SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTK  114 (176)
Q Consensus        82 ~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~  114 (176)
                      .| ..||++ |+++..+|-.+ ....++++-+.+
T Consensus       212 pL-i~lDfS-cNkis~iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  212 PL-IRLDFS-CNKISYLPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             ce-eeeecc-cCceeecchhhhhhhhheeeeecc
Confidence            56 788885 66787775433 233455554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.45  E-value=5e-07  Score=81.53  Aligned_cols=86  Identities=26%  Similarity=0.346  Sum_probs=53.8

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccC-----------------Ccccee
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQI-----------------SPLRTL   64 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l-----------------~~L~~L   64 (176)
                      ++|+.+.  ++|+.|++++|+|+.+|..   .++|++|++++|+|+.+|..+.  +|                 .+|+.|
T Consensus       215 sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~--sL~~L~Ls~N~L~~Lp~lp~~L~~L  287 (788)
T PRK15387        215 TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPP--GLLELSIFSNPLTHLPALPSGLCKL  287 (788)
T ss_pred             cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCccc--ccceeeccCCchhhhhhchhhcCEE
Confidence            3676664  3688888888888888753   4678888888888887774322  11                 234455


Q ss_pred             eccccCCCCCCchhhhcCccceeeccCCcCCccc
Q 036960           65 ELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKL   98 (176)
Q Consensus        65 ~l~~cn~l~~lP~~l~~~L~~~L~l~~~~~L~~l   98 (176)
                      ++++ |.++.+|. ..++| +.|+++++ .+..+
T Consensus       288 ~Ls~-N~Lt~LP~-~p~~L-~~LdLS~N-~L~~L  317 (788)
T PRK15387        288 WIFG-NQLTSLPV-LPPGL-QELSVSDN-QLASL  317 (788)
T ss_pred             ECcC-Cccccccc-ccccc-ceeECCCC-ccccC
Confidence            5666 56666653 33456 66666654 45444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.45  E-value=9e-08  Score=82.74  Aligned_cols=74  Identities=26%  Similarity=0.463  Sum_probs=54.2

Q ss_pred             ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhcCc
Q 036960            7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLPSY   83 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L   83 (176)
                      +.-++.|+.|||+.|.|+++|. +|..-.++++|+|++|+|+.+-.. |.  .+.+|.+|.|+. |.++.+|...+++|
T Consensus       145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~--~lnsL~tlkLsr-NrittLp~r~Fk~L  220 (873)
T KOG4194|consen  145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD--SLNSLLTLKLSR-NRITTLPQRSFKRL  220 (873)
T ss_pred             HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccc--ccchheeeeccc-CcccccCHHHhhhc
Confidence            4456667777777777777665 566667788888888888877543 77  788888888888 88888887666534

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.34  E-value=5e-08  Score=87.62  Aligned_cols=87  Identities=29%  Similarity=0.446  Sum_probs=77.2

Q ss_pred             cCcc-ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCC--CCchhh
Q 036960            3 ILQD-IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQ--SLPKLL   79 (176)
Q Consensus         3 lP~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~--~lP~~l   79 (176)
                      +|.+ +.++..|+.|+|++|+++.+|..+..+..|++|...+|++..+| .+.  .++.|+.+|++. |.++  .+|...
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~--~l~qL~~lDlS~-N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELA--QLPQLKVLDLSC-NNLSEVTLPEAL  473 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhh--hcCcceEEeccc-chhhhhhhhhhC
Confidence            5655 57889999999999999999999999999999999999999999 678  899999999999 9995  466666


Q ss_pred             h-cCccceeeccCCcC
Q 036960           80 L-PSYPEKVDTFMLES   94 (176)
Q Consensus        80 ~-~~L~~~L~l~~~~~   94 (176)
                      + ++| ++||+++.+.
T Consensus       474 p~p~L-kyLdlSGN~~  488 (1081)
T KOG0618|consen  474 PSPNL-KYLDLSGNTR  488 (1081)
T ss_pred             CCccc-ceeeccCCcc
Confidence            6 689 9999988764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.30  E-value=2.6e-07  Score=77.19  Aligned_cols=87  Identities=37%  Similarity=0.537  Sum_probs=66.0

Q ss_pred             ccCccccCCC-CCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchh--
Q 036960            2 EILQDIGCLS-LLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKL--   78 (176)
Q Consensus         2 ~lP~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~--   78 (176)
                      +||+....++ +|+.|++++|++..+|..++.++.|+.|++++|++..+|...+  .+++|+.|++++ |+++.+|..  
T Consensus       130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~~~L~~L~ls~-N~i~~l~~~~~  206 (394)
T COG4886         130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS--NLSNLNNLDLSG-NKISDLPPEIE  206 (394)
T ss_pred             cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh--hhhhhhheeccC-CccccCchhhh
Confidence            4666666664 8888888888888887778888888888888888888887776  678888888888 888888865  


Q ss_pred             hhcCccceeeccCC
Q 036960           79 LLPSYPEKVDTFML   92 (176)
Q Consensus        79 l~~~L~~~L~l~~~   92 (176)
                      ....| +.+.+.+.
T Consensus       207 ~~~~L-~~l~~~~N  219 (394)
T COG4886         207 LLSAL-EELDLSNN  219 (394)
T ss_pred             hhhhh-hhhhhcCC
Confidence            33346 66666544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.27  E-value=2.2e-06  Score=77.45  Aligned_cols=73  Identities=29%  Similarity=0.404  Sum_probs=39.2

Q ss_pred             CCCCcEEeccCCCCccccccccCC-----------------CCCcEEEeeCCCCcccCcccccccCCccceeeccccCCC
Q 036960           10 LSLLKELNLCVNDFQRLPASIGSL-----------------SSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTL   72 (176)
Q Consensus        10 l~~L~~L~L~~n~l~~lp~~~~~l-----------------~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l   72 (176)
                      +++|++|++++|+|+.+|..+..+                 .+|+.|++++|+++.+|.     .+++|+.|++++ |.+
T Consensus       241 p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~-N~L  314 (788)
T PRK15387        241 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSD-NQL  314 (788)
T ss_pred             CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc-----cccccceeECCC-Ccc
Confidence            467788888888887776432111                 123334444444444442     224677777777 777


Q ss_pred             CCCchhhhcCccceeecc
Q 036960           73 QSLPKLLLPSYPEKVDTF   90 (176)
Q Consensus        73 ~~lP~~l~~~L~~~L~l~   90 (176)
                      +.+|. ++.+| ..|++.
T Consensus       315 ~~Lp~-lp~~L-~~L~Ls  330 (788)
T PRK15387        315 ASLPA-LPSEL-CKLWAY  330 (788)
T ss_pred             ccCCC-Ccccc-cccccc
Confidence            66663 33334 444443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.24  E-value=3.4e-07  Score=75.90  Aligned_cols=68  Identities=25%  Similarity=0.407  Sum_probs=55.1

Q ss_pred             CCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhhc
Q 036960           12 LLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus        12 ~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      .-..++|..|+|+.+|+ .|+.+.+|+.|||++|+|+.| |..|.  ++.+|..|-+.+-|+|+.+|.+.+.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~--GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK--GLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh--hhHhhhHHHhhcCCchhhhhhhHhh
Confidence            45678888999999887 788899999999999999977 66688  8888877666544888999987665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.24  E-value=4.4e-07  Score=83.11  Aligned_cols=81  Identities=31%  Similarity=0.510  Sum_probs=66.1

Q ss_pred             ccCCCCCcEEeccCC-CCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960            7 IGCLSLLKELNLCVN-DFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY   83 (176)
Q Consensus         7 l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L   83 (176)
                      |..++.|++|||++| .+..+|++++.+-+|++|++++..+..+|.+++  +|.+|.+|++.....+..+|.....  +|
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~--~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLG--NLKKLIYLNLEVTGRLESIPGILLELQSL  644 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHH--HHHhhheeccccccccccccchhhhcccc
Confidence            667999999999988 788899999999999999999999999999999  9999999999884556666533331  56


Q ss_pred             cceeecc
Q 036960           84 PEKVDTF   90 (176)
Q Consensus        84 ~~~L~l~   90 (176)
                       ++|.+.
T Consensus       645 -r~L~l~  650 (889)
T KOG4658|consen  645 -RVLRLP  650 (889)
T ss_pred             -cEEEee
Confidence             666653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.06  E-value=8.1e-07  Score=71.71  Aligned_cols=65  Identities=23%  Similarity=0.351  Sum_probs=56.6

Q ss_pred             cCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960            8 GCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      .....|+++||++|.|+.+-+++.-.+.++.|++++|.|..+.. +.  .+++|+.||+++ |.+.++-
T Consensus       281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La--~L~~L~~LDLS~-N~Ls~~~  345 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LA--ELPQLQLLDLSG-NLLAECV  345 (490)
T ss_pred             chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hh--hcccceEeeccc-chhHhhh
Confidence            34567889999999999999999999999999999999998864 77  899999999999 9887765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.04  E-value=5.9e-07  Score=64.80  Aligned_cols=70  Identities=26%  Similarity=0.495  Sum_probs=50.4

Q ss_pred             CCCCCcEEeccCCCCccccccccCC-CCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960            9 CLSLLKELNLCVNDFQRLPASIGSL-SSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         9 ~l~~L~~L~L~~n~l~~lp~~~~~l-~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      ....|+..+|++|.++.+|+.|... +.++++++++|.|..+|+.+.  .++.|+.|+++. |.+...|.-+.+
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~A--am~aLr~lNl~~-N~l~~~p~vi~~  121 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELA--AMPALRSLNLRF-NPLNAEPRVIAP  121 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHh--hhHHhhhccccc-CccccchHHHHH
Confidence            3445666677788777777766544 367777888888888887777  777888888887 777777765554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.02  E-value=1.2e-06  Score=72.69  Aligned_cols=72  Identities=25%  Similarity=0.366  Sum_probs=63.3

Q ss_pred             ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhc
Q 036960            7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      |..+++|+.|+|++|+|+.+-+ +|..+.++++|.|..|+|..+-+. |.  ++..|++|++++ |+++.+-.+.+.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~--~ls~L~tL~L~~-N~it~~~~~aF~  343 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ--GLSGLKTLSLYD-NQITTVAPGAFQ  343 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhh--ccccceeeeecC-CeeEEEeccccc
Confidence            7789999999999999999754 899999999999999999988654 78  999999999999 999887666664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.00  E-value=2.5e-06  Score=71.24  Aligned_cols=90  Identities=33%  Similarity=0.497  Sum_probs=76.7

Q ss_pred             ccCCCCCcEEeccCCCCccccccccCCC-CCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhh--hcCc
Q 036960            7 IGCLSLLKELNLCVNDFQRLPASIGSLS-SLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLL--LPSY   83 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l--~~~L   83 (176)
                      +..++.+..|++.+|.++.+|...+.+. +|+.|++++|.+..+|..+.  .+++|+.|++++ |.+..+|...  ...|
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~--~l~~L~~L~l~~-N~l~~l~~~~~~~~~L  188 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLR--NLPNLKNLDLSF-NDLSDLPKLLSNLSNL  188 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhh--ccccccccccCC-chhhhhhhhhhhhhhh
Confidence            4456779999999999999999888885 99999999999999988889  999999999999 9999999764  3477


Q ss_pred             cceeeccCCcCCcccccc
Q 036960           84 PEKVDTFMLESLSKLFRI  101 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~~  101 (176)
                       +.|++++. .+..++..
T Consensus       189 -~~L~ls~N-~i~~l~~~  204 (394)
T COG4886         189 -NNLDLSGN-KISDLPPE  204 (394)
T ss_pred             -hheeccCC-ccccCchh
Confidence             88888765 56666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.95  E-value=8.6e-06  Score=74.80  Aligned_cols=100  Identities=23%  Similarity=0.298  Sum_probs=81.0

Q ss_pred             CCCCcEEeccCCC--Ccccccc-ccCCCCCcEEEeeCCC-CcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960           10 LSLLKELNLCVND--FQRLPAS-IGSLSSLKRMNLVENK-LDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY   83 (176)
Q Consensus        10 l~~L~~L~L~~n~--l~~lp~~-~~~l~~L~~L~l~~n~-l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L   83 (176)
                      .+.|++|-+..|.  +..++.. |..++.|+.||+++|. +.++|+.++  +|-+|++|++++ ..+..+|.++..  .|
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~--~Li~LryL~L~~-t~I~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG--ELVHLRYLDLSD-TGISHLPSGLGNLKKL  620 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh--hhhhhhcccccC-CCccccchHHHHHHhh
Confidence            3468888888885  6666654 7889999999999886 889999999  999999999999 999999998886  78


Q ss_pred             cceeeccCCcCCcccccccC-CCCccEEEee
Q 036960           84 PEKVDTFMLESLSKLFRIIT-TRKLTYFIFT  113 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~~~~-~~~l~~l~~~  113 (176)
                       .+|++.....+..++.... ..+++++.+.
T Consensus       621 -~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  621 -IYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             -heeccccccccccccchhhhcccccEEEee
Confidence             8999987777766644443 5667766554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.81  E-value=1.7e-06  Score=62.46  Aligned_cols=76  Identities=21%  Similarity=0.338  Sum_probs=67.9

Q ss_pred             ccCccccC-CCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh
Q 036960            2 EILQDIGC-LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus         2 ~lP~~l~~-l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      ++|+.|.. ++.++.|++++|+|.++|.++..++.|+.|+++.|.+...|+.+.  .|.+|-.|+..+ |...++|-.+.
T Consensus        67 ~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~--~L~~l~~Lds~~-na~~eid~dl~  143 (177)
T KOG4579|consen   67 KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA--PLIKLDMLDSPE-NARAEIDVDLF  143 (177)
T ss_pred             hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHH--HHHhHHHhcCCC-CccccCcHHHh
Confidence            45666654 568999999999999999999999999999999999999999998  899999999999 99999996554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.80  E-value=6.6e-06  Score=66.53  Aligned_cols=84  Identities=21%  Similarity=0.233  Sum_probs=64.2

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP-   81 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-   81 (176)
                      |-++..-++.++.|++++|.|..+.. +..+.+|+.||+++|.++.+-.+-.  ++-+.+.|.+++ |.++.+. ++.. 
T Consensus       299 iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~--KLGNIKtL~La~-N~iE~LS-GL~KL  373 (490)
T KOG1259|consen  299 IDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHL--KLGNIKTLKLAQ-NKIETLS-GLRKL  373 (490)
T ss_pred             hhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHh--hhcCEeeeehhh-hhHhhhh-hhHhh
Confidence            34455567889999999999998864 8899999999999999887755545  667778888888 8887776 5554 


Q ss_pred             -CccceeeccCC
Q 036960           82 -SYPEKVDTFML   92 (176)
Q Consensus        82 -~L~~~L~l~~~   92 (176)
                       +| ..||+++.
T Consensus       374 YSL-vnLDl~~N  384 (490)
T KOG1259|consen  374 YSL-VNLDLSSN  384 (490)
T ss_pred             hhh-eecccccc
Confidence             66 66666543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.61  E-value=2.4e-05  Score=63.00  Aligned_cols=42  Identities=26%  Similarity=0.218  Sum_probs=20.0

Q ss_pred             cccCCCCCcEEeccCCCCcc-ccccccCCCC---CcEEEeeCCCCc
Q 036960            6 DIGCLSLLKELNLCVNDFQR-LPASIGSLSS---LKRMNLVENKLD   47 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~---L~~L~l~~n~l~   47 (176)
                      .+..+++|+.|++++|.+.. .+..+..+.+   |++|++++|.+.
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence            34445555566665555543 2223333322   555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.56  E-value=0.00017  Score=60.92  Aligned_cols=62  Identities=23%  Similarity=0.353  Sum_probs=43.6

Q ss_pred             CCCCCcEEeccCCCCccccccccCCCCCcEEEeeCC-CCcccCcccccccCCccceeeccccCCCCCCch
Q 036960            9 CLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVEN-KLDNLPITISIKQISPLRTLELRNCNTLQSLPK   77 (176)
Q Consensus         9 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n-~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~   77 (176)
                      .+.+++.|++++|.|+.+|.   -..+|+.|.++++ .++.+|..+.    ++|+.|++++|..+..+|.
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP----~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP----EGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh----hhhhheEccCccccccccc
Confidence            45778888888888888872   2346888888774 4667775433    4677888888667776664

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.55  E-value=3.8e-05  Score=61.81  Aligned_cols=58  Identities=29%  Similarity=0.448  Sum_probs=31.1

Q ss_pred             CcEEeccCCCCcc-----ccccccCC-CCCcEEEeeCCCCc-----ccCcccccccCCccceeeccccCCCC
Q 036960           13 LKELNLCVNDFQR-----LPASIGSL-SSLKRMNLVENKLD-----NLPITISIKQISPLRTLELRNCNTLQ   73 (176)
Q Consensus        13 L~~L~L~~n~l~~-----lp~~~~~l-~~L~~L~l~~n~l~-----~lP~~~~~~~l~~L~~L~l~~cn~l~   73 (176)
                      |++|++++|.++.     +...+..+ ++|+.|++++|.++     .++..+.  .+++|+.|++++ |.++
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~--~~~~L~~L~l~~-n~l~  178 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR--ANRDLKELNLAN-NGIG  178 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH--hCCCcCEEECcC-CCCc
Confidence            6666666666552     22334444 56666666666655     2233344  455566666666 5544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.52  E-value=5e-05  Score=64.22  Aligned_cols=66  Identities=26%  Similarity=0.434  Sum_probs=49.6

Q ss_pred             ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960            7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      +..+.+|+.|++.+|+|+.+...+..+.+|++|++++|.|+.+. .+.  .++.|+.|++++ |.+..++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~--~l~~L~~L~l~~-N~i~~~~  156 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLS--TLTLLKELNLSG-NLISDIS  156 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chh--hccchhhheecc-Ccchhcc
Confidence            56677788888888888887655777888888888888888773 355  666777888888 7777766

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.36  E-value=0.00023  Score=60.06  Aligned_cols=65  Identities=23%  Similarity=0.404  Sum_probs=55.2

Q ss_pred             ccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccceeeccCCcCCccccc
Q 036960           30 IGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFR  100 (176)
Q Consensus        30 ~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~~L~l~~~~~L~~l~~  100 (176)
                      +..+.++..|++++|.++.+|.     -..+|+.|.+++|+.++.+|..++.+| ++|++.+|..+..+|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~LP~nL-e~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV-----LPNELTEITIENCNNLTTLPGSIPEGL-EKLTVCHCPEISGLPE  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC-----CCCCCcEEEccCCCCcccCCchhhhhh-hheEccCccccccccc
Confidence            4457899999999999999983     235799999999999999998888899 9999999977776644

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.26  E-value=9.1e-05  Score=62.65  Aligned_cols=66  Identities=24%  Similarity=0.468  Sum_probs=58.0

Q ss_pred             ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCch
Q 036960            7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPK   77 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~   77 (176)
                      +..+++|++|++++|.|+.+. .+..+..|+.|++++|.|+.+. .+.  .++.|+.+++++ |.+..+..
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~--~l~~L~~l~l~~-n~i~~ie~  179 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLE--SLKSLKLLDLSY-NRIVDIEN  179 (414)
T ss_pred             hhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCc--cchhhhcccCCc-chhhhhhh
Confidence            567899999999999999985 6888888999999999999885 466  688999999999 99988875

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.21  E-value=1.3e-05  Score=71.19  Aligned_cols=60  Identities=25%  Similarity=0.457  Sum_probs=30.4

Q ss_pred             CcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960           13 LKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus        13 L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      |.+.+.++|.++.+-+++.-++.|+.|+|++|+++.+. .+.  .+++|++||++. |.++.+|
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr--~l~~LkhLDlsy-N~L~~vp  225 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLR--RLPKLKHLDLSY-NCLRHVP  225 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHH--hccccccccccc-chhcccc
Confidence            33444445555554445555555555555555555443 344  455555555555 5555555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.13  E-value=0.0005  Score=52.65  Aligned_cols=64  Identities=27%  Similarity=0.447  Sum_probs=52.1

Q ss_pred             CCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960           10 LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus        10 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      +.+...++|++|.+..++ .+..++.|.+|.+.+|+|+.+-+.+. ..+++|+.|.+.+ |+++++-
T Consensus        41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~-~~~p~l~~L~Ltn-Nsi~~l~  104 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLD-TFLPNLKTLILTN-NSIQELG  104 (233)
T ss_pred             ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchh-hhccccceEEecC-cchhhhh
Confidence            346678899999888875 68889999999999999998866554 1567899999999 9998775

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.04  E-value=5.1e-05  Score=67.60  Aligned_cols=78  Identities=31%  Similarity=0.409  Sum_probs=55.8

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhc--C
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLP--S   82 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~   82 (176)
                      ++.-++.|+.|+|++|+++.+- .+..+++|+.|||+.|.+..+|.. ..  ++ +|+.|.+++ |.++.+- ++.+  +
T Consensus       182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~--gc-~L~~L~lrn-N~l~tL~-gie~Lks  255 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMV--GC-KLQLLNLRN-NALTTLR-GIENLKS  255 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchh--hh-hheeeeecc-cHHHhhh-hHHhhhh
Confidence            3445677888888888888875 778888888888888888888763 22  33 377788888 7777766 4443  5


Q ss_pred             ccceeecc
Q 036960           83 YPEKVDTF   90 (176)
Q Consensus        83 L~~~L~l~   90 (176)
                      | +.||++
T Consensus       256 L-~~LDls  262 (1096)
T KOG1859|consen  256 L-YGLDLS  262 (1096)
T ss_pred             h-hccchh
Confidence            6 666654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.00  E-value=0.00028  Score=34.49  Aligned_cols=19  Identities=32%  Similarity=0.569  Sum_probs=9.6

Q ss_pred             CcEEeccCCCCcccccccc
Q 036960           13 LKELNLCVNDFQRLPASIG   31 (176)
Q Consensus        13 L~~L~L~~n~l~~lp~~~~   31 (176)
                      |++|++++|+|+.+|++|+
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.86  E-value=0.0003  Score=34.38  Aligned_cols=20  Identities=30%  Similarity=0.572  Sum_probs=14.1

Q ss_pred             CCcEEEeeCCCCcccCcccc
Q 036960           35 SLKRMNLVENKLDNLPITIS   54 (176)
Q Consensus        35 ~L~~L~l~~n~l~~lP~~~~   54 (176)
                      +|++|++++|+|+.+|++|+
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            46777777777777776655

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.53  E-value=0.0039  Score=43.42  Aligned_cols=76  Identities=18%  Similarity=0.292  Sum_probs=43.0

Q ss_pred             ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhc---
Q 036960            7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLP---   81 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~---   81 (176)
                      |.+.++|+.+.+.. .++.++. .|.+.++|+.+.+.++ +..++.. |.  ++++++.+.+.+  .+..++...+.   
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~--~~~~l~~i~~~~--~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFS--NCKSLESITFPN--NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTT--T-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeee--cccccccccccc--cccccccccccccc
Confidence            56677888888875 5777766 6778888999998775 7777664 66  777888888854  44555544432   


Q ss_pred             Cccceeec
Q 036960           82 SYPEKVDT   89 (176)
Q Consensus        82 ~L~~~L~l   89 (176)
                      .+ +.+++
T Consensus        82 ~l-~~i~~   88 (129)
T PF13306_consen   82 NL-KNIDI   88 (129)
T ss_dssp             TE-CEEEE
T ss_pred             cc-ccccc
Confidence            45 55555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.53  E-value=0.0036  Score=48.04  Aligned_cols=68  Identities=24%  Similarity=0.321  Sum_probs=56.5

Q ss_pred             cccCCCCCcEEeccCCCCccccccccC-CCCCcEEEeeCCCCcccCcc--cccccCCccceeeccccCCCCCCc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGS-LSSLKRMNLVENKLDNLPIT--ISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~-l~~L~~L~l~~n~l~~lP~~--~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      .|..++.|.+|.+.+|.|+.+-+.+.. +++|..|.+.+|.|.++.+-  +.  .+++|++|.+-+ |.++.-+
T Consensus        59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa--~~p~L~~Ltll~-Npv~~k~  129 (233)
T KOG1644|consen   59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA--SCPKLEYLTLLG-NPVEHKK  129 (233)
T ss_pred             cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc--cCCccceeeecC-Cchhccc
Confidence            466788999999999999998776655 56799999999999988553  45  789999999999 8887655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.41  E-value=0.0025  Score=50.36  Aligned_cols=58  Identities=22%  Similarity=0.398  Sum_probs=25.4

Q ss_pred             CCcEEeccCCCCccccccccCCCCCcEEEeeCC--CCc-ccCcccccccCCccceeeccccCCCC
Q 036960           12 LLKELNLCVNDFQRLPASIGSLSSLKRMNLVEN--KLD-NLPITISIKQISPLRTLELRNCNTLQ   73 (176)
Q Consensus        12 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n--~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~   73 (176)
                      .|+.+.+.+..++.+- .+..|++|++|.++.|  ++. .++-...  .+++|+++++++ |+++
T Consensus        44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e--~~P~l~~l~ls~-Nki~  104 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAE--KAPNLKVLNLSG-NKIK  104 (260)
T ss_pred             chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhh--hCCceeEEeecC-Cccc
Confidence            3444444444443331 3344455555555555  222 3332233  345555555555 5543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.24  E-value=0.0028  Score=28.91  Aligned_cols=16  Identities=38%  Similarity=0.596  Sum_probs=5.9

Q ss_pred             CCcEEeccCCCCcccc
Q 036960           12 LLKELNLCVNDFQRLP   27 (176)
Q Consensus        12 ~L~~L~L~~n~l~~lp   27 (176)
                      +|+.|++++|+|+++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            3455555555544443

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.15  E-value=0.0039  Score=49.30  Aligned_cols=62  Identities=31%  Similarity=0.450  Sum_probs=47.5

Q ss_pred             ccCCCCCcEEeccCC--CCcc-ccccccCCCCCcEEEeeCCCCcccC--cccccccCCccceeeccccC
Q 036960            7 IGCLSLLKELNLCVN--DFQR-LPASIGSLSSLKRMNLVENKLDNLP--ITISIKQISPLRTLELRNCN   70 (176)
Q Consensus         7 l~~l~~L~~L~L~~n--~l~~-lp~~~~~l~~L~~L~l~~n~l~~lP--~~~~~~~l~~L~~L~l~~cn   70 (176)
                      +-.|++|++|.++.|  .+.. ++.-...+++|+++++++|+|+-+-  ....  .+.+|..|++.+|.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~--~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK--ELENLKSLDLFNCS  127 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh--hhcchhhhhcccCC
Confidence            446789999999999  5555 6655666699999999999987431  1245  67889999999943

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.12  E-value=0.0034  Score=28.67  Aligned_cols=16  Identities=38%  Similarity=0.818  Sum_probs=6.9

Q ss_pred             CCcEEEeeCCCCcccC
Q 036960           35 SLKRMNLVENKLDNLP   50 (176)
Q Consensus        35 ~L~~L~l~~n~l~~lP   50 (176)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4556666666655554

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.0023  Score=54.14  Aligned_cols=39  Identities=31%  Similarity=0.453  Sum_probs=17.9

Q ss_pred             CCCCCcEEeccCCCCcc---ccccccCCCCCcEEEeeCCCCc
Q 036960            9 CLSLLKELNLCVNDFQR---LPASIGSLSSLKRMNLVENKLD   47 (176)
Q Consensus         9 ~l~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~l~~n~l~   47 (176)
                      .+++++.|+|+.|-+..   +-.-+..+++|+.|+++.|++.
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~  185 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS  185 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence            44555555555554443   1112344445555555554433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.77  E-value=0.0071  Score=54.64  Aligned_cols=56  Identities=25%  Similarity=0.463  Sum_probs=30.1

Q ss_pred             CCCCcEEeccCCCCcc--ccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccc
Q 036960           10 LSLLKELNLCVNDFQR--LPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN   68 (176)
Q Consensus        10 l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~   68 (176)
                      +|+|+.|.+++-.+..  .-.-..++++|..||+|+.+++.+ .+++  .|++|+.|.+.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS--~LknLq~L~mrn  204 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGIS--RLKNLQVLSMRN  204 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHh--ccccHHHHhccC
Confidence            5566666655544322  223344555666666666666655 3455  555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.0051  Score=52.09  Aligned_cols=64  Identities=23%  Similarity=0.444  Sum_probs=43.4

Q ss_pred             CCCCcEEeccCCCCcccc--ccccCCCCCcEEEeeCCCCccc--Ccc-----cccccCCccceeeccccCCCCCCc
Q 036960           10 LSLLKELNLCVNDFQRLP--ASIGSLSSLKRMNLVENKLDNL--PIT-----ISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus        10 l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~l~~n~l~~l--P~~-----~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      +..|+.|+|++|++-..+  .-.+.++.|+.|+++.+.|..+  |+.     ..  ..++|++|+++. |++..++
T Consensus       245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~--~f~kL~~L~i~~-N~I~~w~  317 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH--TFPKLEYLNISE-NNIRDWR  317 (505)
T ss_pred             hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhc--ccccceeeeccc-Ccccccc
Confidence            456777777777776655  3567777777777777777743  443     23  466778888887 7776666

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.00082  Score=54.52  Aligned_cols=108  Identities=18%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             CCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCC-CcccC--cccccccCCccceeeccccCCCCCC----chhhhc
Q 036960           10 LSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENK-LDNLP--ITISIKQISPLRTLELRNCNTLQSL----PKLLLP   81 (176)
Q Consensus        10 l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~-l~~lP--~~~~~~~l~~L~~L~l~~cn~l~~l----P~~l~~   81 (176)
                      +.+|+.|.+.++++.. +-..+..-..|+.|+++.+. ++...  --+.  +++.|+.|+++.|-..+..    -..+++
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~--scs~L~~LNlsWc~l~~~~Vtv~V~hise  286 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS--SCSRLDELNLSWCFLFTEKVTVAVAHISE  286 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH--hhhhHhhcCchHhhccchhhhHHHhhhch
Confidence            3445555555555544 33345555555666665543 44221  1234  5566666666654333221    112233


Q ss_pred             CccceeeccCCcCCccccc----ccCCCCccEEEeeCCcCccc
Q 036960           82 SYPEKVDTFMLESLSKLFR----IITTRKLTYFIFTKCLKLNK  120 (176)
Q Consensus        82 ~L~~~L~l~~~~~L~~l~~----~~~~~~l~~l~~~~c~~l~~  120 (176)
                      +| ..|+++++.+--...+    ...-.++..+++++|..++.
T Consensus       287 ~l-~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~  328 (419)
T KOG2120|consen  287 TL-TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN  328 (419)
T ss_pred             hh-hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence            55 5666665532111100    11345677888888888876

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.23  E-value=0.014  Score=52.77  Aligned_cols=57  Identities=16%  Similarity=0.359  Sum_probs=25.7

Q ss_pred             CCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCc--ccccccCCccceeeccc
Q 036960            9 CLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPI--TISIKQISPLRTLELRN   68 (176)
Q Consensus         9 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~--~~~~~~l~~L~~L~l~~   68 (176)
                      ++++|..||+|+.+++.+ .+++.|++|+.|.+.+=.+..-..  .+.  +|++|+.||+|.
T Consensus       171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF--~L~~L~vLDIS~  229 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF--NLKKLRVLDISR  229 (699)
T ss_pred             ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh--cccCCCeeeccc
Confidence            344455555555555444 344455555555444433332221  233  444555555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.13  E-value=0.016  Score=29.07  Aligned_cols=18  Identities=33%  Similarity=0.685  Sum_probs=9.2

Q ss_pred             CCCcEEEeeCCCCcccCc
Q 036960           34 SSLKRMNLVENKLDNLPI   51 (176)
Q Consensus        34 ~~L~~L~l~~n~l~~lP~   51 (176)
                      ++|++|++++|+|+.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            345555555555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.13  E-value=0.016  Score=29.07  Aligned_cols=18  Identities=33%  Similarity=0.685  Sum_probs=9.2

Q ss_pred             CCCcEEEeeCCCCcccCc
Q 036960           34 SSLKRMNLVENKLDNLPI   51 (176)
Q Consensus        34 ~~L~~L~l~~n~l~~lP~   51 (176)
                      ++|++|++++|+|+.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            345555555555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.07  E-value=0.02  Score=28.78  Aligned_cols=22  Identities=45%  Similarity=0.649  Sum_probs=19.3

Q ss_pred             CCccceeeccccCCCCCCchhhh
Q 036960           58 ISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus        58 l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      +++|+.|++++ |.++.+|.+++
T Consensus         1 L~~L~~L~L~~-N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSN-NQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCC-CcCCcCCHHHc
Confidence            46899999999 99999998765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.07  E-value=0.02  Score=28.78  Aligned_cols=22  Identities=45%  Similarity=0.649  Sum_probs=19.3

Q ss_pred             CCccceeeccccCCCCCCchhhh
Q 036960           58 ISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus        58 l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      +++|+.|++++ |.++.+|.+++
T Consensus         1 L~~L~~L~L~~-N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSN-NQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCC-CcCCcCCHHHc
Confidence            46899999999 99999998765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.78  E-value=0.02  Score=46.73  Aligned_cols=62  Identities=23%  Similarity=0.318  Sum_probs=30.0

Q ss_pred             CCCCCcEEeccCCCCccccccc-cCCCCCcEEEeeCCCCc--ccCcccccccCCccceeeccccCCCC
Q 036960            9 CLSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLD--NLPITISIKQISPLRTLELRNCNTLQ   73 (176)
Q Consensus         9 ~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~l~~n~l~--~lP~~~~~~~l~~L~~L~l~~cn~l~   73 (176)
                      +|+.|++|+++.|.+...-... ..+.+|+.|-|.|..+.  ..-....  .+|.++.|+++. |+++
T Consensus        95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~--~lP~vtelHmS~-N~~r  159 (418)
T KOG2982|consen   95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD--DLPKVTELHMSD-NSLR  159 (418)
T ss_pred             cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh--cchhhhhhhhcc-chhh
Confidence            4555555555555544311111 23445555555554433  2323344  566666666666 6443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.75  E-value=0.0019  Score=52.02  Aligned_cols=60  Identities=25%  Similarity=0.363  Sum_probs=26.5

Q ss_pred             CCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960           12 LLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus        12 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      +.+.|+..++.|+.+. -...++.|+.|.|+-|.|+.+- .+.  .+++|+.|.|.. |.|..+.
T Consensus        20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~--rCtrLkElYLRk-N~I~sld   79 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQ--RCTRLKELYLRK-NCIESLD   79 (388)
T ss_pred             HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHH--HHHHHHHHHHHh-cccccHH
Confidence            3444444444444432 2344444455555555444442 233  444444444444 4444433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.32  E-value=0.0011  Score=52.17  Aligned_cols=82  Identities=21%  Similarity=0.233  Sum_probs=63.1

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY   83 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L   83 (176)
                      ++......+.||++.|++..+-..+.-++.|..|+++.|+|..+|+.++  .+..+..+++.. |..+..|.+...  ++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~--q~~e~~~~~~~~-n~~~~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAK--QQRETVNAASHK-NNHSQQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHH--HHHHHHHHHhhc-cchhhCCccccccCCc
Confidence            3566777888888888888887788888888888888888888888888  888888888888 888888865543  33


Q ss_pred             cceeeccC
Q 036960           84 PEKVDTFM   91 (176)
Q Consensus        84 ~~~L~l~~   91 (176)
                       ++++..+
T Consensus       114 -k~~e~k~  120 (326)
T KOG0473|consen  114 -KKNEQKK  120 (326)
T ss_pred             -chhhhcc
Confidence             4444433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.22  E-value=0.0029  Score=51.00  Aligned_cols=63  Identities=30%  Similarity=0.389  Sum_probs=53.7

Q ss_pred             cCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCC
Q 036960            8 GCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTL   72 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l   72 (176)
                      ..|+.|++|.|+-|+|+.+- .+..++.|++|.|..|.|..+-+-+.+.++++|+.|+|.. |.-
T Consensus        38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E-NPC  100 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE-NPC  100 (388)
T ss_pred             HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc-CCc
Confidence            46899999999999999984 6889999999999999999886643222899999999998 766

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.35  E-value=0.33  Score=33.43  Aligned_cols=68  Identities=15%  Similarity=0.280  Sum_probs=38.6

Q ss_pred             ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh
Q 036960            7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      |.++++|+.+.+.++ ++.++. .+.+..+|+.+.+.+ .+..++.. |.  .+++|+.+.+.. + +..++....
T Consensus        31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~--~~~~l~~i~~~~-~-~~~i~~~~f  100 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS--NCTNLKNIDIPS-N-ITEIGSSSF  100 (129)
T ss_dssp             TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT--T-TTECEEEETT-T--BEEHTTTT
T ss_pred             ccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc--ccccccccccCc-c-ccEEchhhh
Confidence            556667888887664 666665 567776788888865 56656543 55  677888887765 4 555554433

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.04  E-value=0.092  Score=26.67  Aligned_cols=17  Identities=47%  Similarity=0.729  Sum_probs=8.4

Q ss_pred             CCcEEEeeCCCCcccCc
Q 036960           35 SLKRMNLVENKLDNLPI   51 (176)
Q Consensus        35 ~L~~L~l~~n~l~~lP~   51 (176)
                      +|+.|++++|+++.+|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            34455555555555543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.78  E-value=0.11  Score=26.44  Aligned_cols=18  Identities=44%  Similarity=0.643  Sum_probs=16.2

Q ss_pred             CCCcEEeccCCCCccccc
Q 036960           11 SLLKELNLCVNDFQRLPA   28 (176)
Q Consensus        11 ~~L~~L~L~~n~l~~lp~   28 (176)
                      ++|++|++++|+++.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            468999999999999996

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.33  E-value=0.0073  Score=49.17  Aligned_cols=79  Identities=24%  Similarity=0.261  Sum_probs=60.4

Q ss_pred             CCcEEeccCCCCcc--ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCCCCchhhh----cCcc
Q 036960           12 LLKELNLCVNDFQR--LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQSLPKLLL----PSYP   84 (176)
Q Consensus        12 ~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~----~~L~   84 (176)
                      .|++|||++..|+.  +-.-+..+.+|+.|.+.|+++. .+-..+.  +-.+|+.|+++.|+-+++....+-    ..| 
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA--kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L-  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA--KNSNLVRLNLSMCSGFTENALQLLLSSCSRL-  262 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh--ccccceeeccccccccchhHHHHHHHhhhhH-
Confidence            48899999988876  5446788899999999999988 5656677  788999999999998877543221    255 


Q ss_pred             ceeeccCCc
Q 036960           85 EKVDTFMLE   93 (176)
Q Consensus        85 ~~L~l~~~~   93 (176)
                      ..|+++.|.
T Consensus       263 ~~LNlsWc~  271 (419)
T KOG2120|consen  263 DELNLSWCF  271 (419)
T ss_pred             hhcCchHhh
Confidence            666666653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.87  E-value=0.0059  Score=48.08  Aligned_cols=64  Identities=16%  Similarity=0.179  Sum_probs=57.2

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCC
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTL   72 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l   72 (176)
                      .++.++.|..|+++.|++..+|.+++.+..+..+++..|..++.|.+++  .++.++.++... |.+
T Consensus        60 n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~--k~~~~k~~e~k~-~~~  123 (326)
T KOG0473|consen   60 NFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK--KEPHPKKNEQKK-TEF  123 (326)
T ss_pred             chHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc--ccCCcchhhhcc-Ccc
Confidence            3455677888999999999999999999999999999999999999999  999999999988 664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=90.55  E-value=0.098  Score=43.31  Aligned_cols=37  Identities=22%  Similarity=0.387  Sum_probs=16.5

Q ss_pred             CCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCc
Q 036960           11 SLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLD   47 (176)
Q Consensus        11 ~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~   47 (176)
                      +.|+.+.+..|.|..     +-..+..+++|+.||+..|.++
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            444444444444322     1223444455555555555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.58  E-value=0.16  Score=41.63  Aligned_cols=34  Identities=32%  Similarity=0.336  Sum_probs=15.3

Q ss_pred             CCcEEeccCCCCcccc---ccccCCCCCcEEEeeCCC
Q 036960           12 LLKELNLCVNDFQRLP---ASIGSLSSLKRMNLVENK   45 (176)
Q Consensus        12 ~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~l~~n~   45 (176)
                      .++.++|.+|.|....   .-+.+++.|++|+++.|.
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~  108 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS  108 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence            3444455555444421   123444555555555554

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=89.57  E-value=0.27  Score=24.95  Aligned_cols=16  Identities=25%  Similarity=0.659  Sum_probs=9.2

Q ss_pred             CCCcEEEeeCCCCccc
Q 036960           34 SSLKRMNLVENKLDNL   49 (176)
Q Consensus        34 ~~L~~L~l~~n~l~~l   49 (176)
                      .+|+.|++++|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4566666666665544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=87.05  E-value=0.22  Score=41.26  Aligned_cols=81  Identities=20%  Similarity=0.211  Sum_probs=57.1

Q ss_pred             cCCCCCcEEeccCCCCcccc-----ccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCCCc-
Q 036960            8 GCLSLLKELNLCVNDFQRLP-----ASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQSLP-   76 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~lp-----~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~lP-   76 (176)
                      ..-+.|+++....|.+..-+     ..+...+.|+.+.++.|.|..     +-..+.  .+++|+.||+.+ |.++.-- 
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~--~~~~LevLdl~D-Ntft~egs  230 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE--HCPHLEVLDLRD-NTFTLEGS  230 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH--hCCcceeeeccc-chhhhHHH
Confidence            44567899999998887633     346777889999999998762     223456  789999999999 8885321 


Q ss_pred             ----hhhh--cCccceeeccCC
Q 036960           77 ----KLLL--PSYPEKVDTFML   92 (176)
Q Consensus        77 ----~~l~--~~L~~~L~l~~~   92 (176)
                          ..++  ++| +.+++++|
T Consensus       231 ~~LakaL~s~~~L-~El~l~dc  251 (382)
T KOG1909|consen  231 VALAKALSSWPHL-RELNLGDC  251 (382)
T ss_pred             HHHHHHhcccchh-eeeccccc
Confidence                1111  256 78888877

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=86.48  E-value=0.41  Score=38.85  Aligned_cols=81  Identities=17%  Similarity=0.212  Sum_probs=44.9

Q ss_pred             cCCCCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCc----ccCcc-------cccccCCccceeeccccCC
Q 036960            8 GCLSLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLD----NLPIT-------ISIKQISPLRTLELRNCNT   71 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~----~lP~~-------~~~~~l~~L~~L~l~~cn~   71 (176)
                      ..+..++.++||+|.|..     +...+.+-.+|+..+++.-...    ++|+.       +-  ++++|+..++|. |-
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLl--kcp~l~~v~LSD-NA  103 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALL--KCPRLQKVDLSD-NA  103 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHh--cCCcceeeeccc-cc
Confidence            346778888999988754     3334555566666666543211    23322       23  456666666666 66


Q ss_pred             CC-CCchhhhc------CccceeeccCC
Q 036960           72 LQ-SLPKLLLP------SYPEKVDTFML   92 (176)
Q Consensus        72 l~-~lP~~l~~------~L~~~L~l~~~   92 (176)
                      ++ ..|+.+..      .| .+|.+++|
T Consensus       104 fg~~~~e~L~d~is~~t~l-~HL~l~Nn  130 (388)
T COG5238         104 FGSEFPEELGDLISSSTDL-VHLKLNNN  130 (388)
T ss_pred             cCcccchHHHHHHhcCCCc-eeEEeecC
Confidence            63 34443332      44 55555544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.47  E-value=0.64  Score=22.56  Aligned_cols=15  Identities=27%  Similarity=0.357  Sum_probs=7.1

Q ss_pred             CCCcEEeccCCCCcc
Q 036960           11 SLLKELNLCVNDFQR   25 (176)
Q Consensus        11 ~~L~~L~L~~n~l~~   25 (176)
                      ++|++|++++|.|+.
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            455566666665543

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.10  E-value=0.37  Score=37.11  Aligned_cols=77  Identities=18%  Similarity=0.265  Sum_probs=48.3

Q ss_pred             CCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCC-Cc-----ccCcccccccCCccceeeccccCCCCCCch-hhh--c
Q 036960           12 LLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENK-LD-----NLPITISIKQISPLRTLELRNCNTLQSLPK-LLL--P   81 (176)
Q Consensus        12 ~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~-l~-----~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~-~l~--~   81 (176)
                      .++.++.++..|...- +.+..++.++.|.+.++. +.     .+..     -.++|+.|++++|.+|++--- .+.  +
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-----~~~~L~~L~lsgC~rIT~~GL~~L~~lk  176 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-----LAPSLQDLDLSGCPRITDGGLACLLKLK  176 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc-----cccchheeeccCCCeechhHHHHHHHhh
Confidence            4677888888777632 357777888888887774 22     2221     246899999999888876321 111  2


Q ss_pred             CccceeeccCCcC
Q 036960           82 SYPEKVDTFMLES   94 (176)
Q Consensus        82 ~L~~~L~l~~~~~   94 (176)
                      +| +.|.+.+++.
T Consensus       177 nL-r~L~l~~l~~  188 (221)
T KOG3864|consen  177 NL-RRLHLYDLPY  188 (221)
T ss_pred             hh-HHHHhcCchh
Confidence            55 5566655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 8e-12
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 7   IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLEL 66
              LS L+ + +       LP ++   + L+ + L  N L  LP   SI  ++ LR L +
Sbjct: 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP--ASIASLNRLRELSI 157

Query: 67  RNCNTLQSLPKLLLPSYPEKVDTFMLESLSKL 98
           R C  L  LP+ L  S     +   L +L  L
Sbjct: 158 RACPELTELPEPLA-STDASGEHQGLVNLQSL 188

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 1   MEILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISP 60
            +   +   L  L+ L L     + LPASI +L +LK + +  + L  L    +I  +  
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG--PAIHHLPK 230

Query: 61  LRTLELRNCNTLQSLPK 77
           L  L+LR C  L++ P 
Sbjct: 231 LEELDLRGCTALRNYPP 247

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 2   EILQDIGCLSLLKELNLC-VNDFQRLPASIGSLSSLKRMNLVE-NKLDNLPITISIKQIS 59
            +   I  L  L+EL+L      +  P   G  + LKR+ L + + L  LP  + I +++
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP--LDIHRLT 277

Query: 60  PLRTLELRNCNTLQSLPKLL 79
            L  L+LR C  L  LP L+
Sbjct: 278 QLEKLDLRGCVNLSRLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 6   DIGCLSLLKELNLC-VNDFQRLPASIGSLSSLKRMNLVEN-KLDNLPITISIKQISPLRT 63
             G  + LK L L   ++   LP  I  L+ L++++L     L  LP    I Q+     
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP--SLIAQLPANCI 305

Query: 64  LELRNCNTLQSLPKLLLPSYP 84
           + +   +    L +    + P
Sbjct: 306 ILVPP-HLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 8/78 (10%), Positives = 19/78 (24%), Gaps = 5/78 (6%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSS--LKRMNLVENKLDNLPITISIKQIS 59
                    +  +         +     +   +      + L    L   P      ++S
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP--DQAFRLS 104

Query: 60  PLRTLELRNCNTLQSLPK 77
            L+ + +     L  LP 
Sbjct: 105 HLQHMTIDAAG-LMELPD 121

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGS-LSSLKRMNLVENKLDNLPITISIKQISP 60
             L+  G    L +L L  N  + +P    +    ++ +    NKL  +P   + K +  
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 61  LRTLELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKL 98
           + +++    N + S  + +  S       +   + S +
Sbjct: 646 MGSVDFSY-NKIGSEGRNISCSMD----DYKGINASTV 678

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 7   IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKL--DNLPITI---SIKQISPL 61
              L  L  +++  N F   P    + S LK   +   +    N  +      I     L
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 62  RTLELRNCNTLQSLPKLLLPS 82
             L++ + N ++ + + L P 
Sbjct: 809 IQLQIGS-NDIRKVDEKLTPQ 828

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 7   IGCLSLLKELNLCVN----------DFQRLPASIGSLSSLKRMNLVENKLDNLPITISIK 56
           +  L  L+ LN+  N          D+ RL     +   ++   +  N L+  P + S++
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 57  QISPLRTLELRNCNTLQSLPKL 78
           ++  L  L+  + N ++ L   
Sbjct: 571 KMVKLGLLDCVH-NKVRHLEAF 591

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 9/81 (11%)

Query: 7   IGCLSLLKELNLCVNDFQRLP--------ASIGSLSSLKRMNLVENKLDNLPITISIKQI 58
               S +  + L  N    +P         +  +   L  ++L  NKL +L        +
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752

Query: 59  SPLRTLELRNCNTLQSLPKLL 79
             L  +++   N   S P   
Sbjct: 753 PYLSNMDVSY-NCFSSFPTQP 772

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPAS--IGSLSSLKRMNLVENKLDNLPITISIKQIS 59
            +  D      ++   +  N+ +  PAS  +  +  L  ++ V NK+ +L    +     
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNV 595

Query: 60  PLRTLELRNCNTLQSLPK 77
            L  L+L   N ++ +P+
Sbjct: 596 KLTDLKLDY-NQIEEIPE 612

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 18/96 (18%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITI-------- 53
            I +D        ++    N    +  +I  L+ L+ +    +      I +        
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475

Query: 54  ----------SIKQISPLRTLELRNCNTLQSLPKLL 79
                     S   +  L  +EL NC  +  LP  L
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 7   IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLEL 66
           I     L +L +  ND +++   +     L  +++ +N   ++ +T     I     + L
Sbjct: 802 ITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

Query: 67  RNCNTLQS 74
            +      
Sbjct: 860 YDKTQDIR 867

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 13  LKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLP------ITISIKQISPLRTLE 65
              + L  N+ Q+ P  +  + S +  + L  N + ++P         + K    L T++
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 66  LRNCNTLQSLP 76
           LR  N L SL 
Sbjct: 735 LRF-NKLTSLS 744

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 2/135 (1%)

Query: 7   IGCLSLLKELNLCVNDFQ-RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
           +     +  L+L     + R+P +IG L+ LK ++   +           ++++P  + E
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 66  LRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKSGNIL 125
            ++        K+ L        + +L+        +   K    I  K  ++    N +
Sbjct: 379 RKH-RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 126 ADSQQKIQHMFSLYY 140
               + IQ +  L  
Sbjct: 438 TFISKAIQRLTKLQI 452

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 10/79 (12%)

Query: 7   IGCLSLLKELNLC-VNDFQRLPASIGSLSSLKRMNLVENKLDNLP--------ITISIKQ 57
              L  L ++ L    +  +LP  +  L  L+ +N+  N+  +          +      
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546

Query: 58  ISPLRTLELRNCNTLQSLP 76
              ++   +   N L+  P
Sbjct: 547 GPKIQIFYMGYNN-LEEFP 564

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISP 60
             L   G    L  LNL  N    +PA+  G    ++ ++   NKL  +P     K +S 
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403

Query: 61  LRTLELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKL 98
           +  ++    N + S+              F   ++S +
Sbjct: 404 MSAIDFSY-NEIGSVDGKNFDPLDP--TPFKGINVSSI 438

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 18/96 (18%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPIT--------- 52
            I +         ++    N+   +  ++  L+ L++  +  +      I          
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE 233

Query: 53  ---------ISIKQISPLRTLELRNCNTLQSLPKLL 79
                    +    +  L  +E+ NC  L  LP  L
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 2/120 (1%)

Query: 7   IGCLSLLKELNLCVNDFQ-RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
           +     +  L+L       R+P +IG L+ L+ + L  +           K IS   + E
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 66  LRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKSGNIL 125
            +    +      +     E     + + ++   +  + +K +  I  K  ++ +  N +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS-RITLKDTQIGQLSNNI 195

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 7   IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNL-----PITISIKQISPL 61
              L  L  ++L  N F + P    + S+LK   +   +              I     L
Sbjct: 509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 62  RTLELRNCNTLQSLPKLLLPS 82
             L++ + N ++ + + + P+
Sbjct: 569 TQLQIGS-NDIRKVNEKITPN 588

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPL 61
            +   +  +  L  L    N  +    + GS   L  +NL  N++  +P          +
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANF-CGFTEQV 379

Query: 62  RTLELRNCNTLQSLPKLL 79
             L   + N L+ +P + 
Sbjct: 380 ENLSFAH-NKLKYIPNIF 396

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 3   ILQDIGCLSLLKELNLCVNDFQRLPA--------SIGSLSSLKRMNLVENKLDNLPITIS 54
             +     S L  +NL  N    +P         +  +   L  ++L  NKL  L     
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508

Query: 55  IKQISPLRTLELRNCNTLQSLPK 77
              +  L  ++L   N+    P 
Sbjct: 509 ATTLPYLVGIDLSY-NSFSKFPT 530

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLP------ITIS 54
            +         +  +NL  N   + P  +  + S L  +NL+ N L  +P         +
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 55  IKQISPLRTLELRNCNTLQSLPK 77
            K    L +++LR  N L  L  
Sbjct: 484 FKNTYLLTSIDLRF-NKLTKLSD 505

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 7   IGCLSLLKELNLCVNDF-QRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISP----- 60
              L  L ++ +       +LP  + +L  ++ +N+  N+  +        Q        
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304

Query: 61  --LRTLELRNCNTLQSLP 76
             ++ + +   N L++ P
Sbjct: 305 EKIQIIYIGYNN-LKTFP 321

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLP---------ASIGSLSSLKRMNLVENKLDNLPIT 52
           ++   +  L  ++ +N+  N               A       ++ + +  N L   P+ 
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

Query: 53  ISIKQISPLRTLELRNCNTLQSLP 76
            S++++  L  LE    N L+   
Sbjct: 324 TSLQKMKKLGMLECLY-NQLEGKL 346

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 12/101 (11%)

Query: 6   DIGCLSLLKELNLCVN--------DFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQ 57
           D   +S++  ++   N        +F  L  +     ++  +NL  N++   P  +    
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL-FST 455

Query: 58  ISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKL 98
            SPL ++ L   N L  +PK  L    E         L+ +
Sbjct: 456 GSPLSSINLMG-NMLTEIPKNSLKDENENFK--NTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 6   DIGCLSLLKELNLCVNDFQ-----RLPASIGSLSSLKRMNLVENKLDNLPIT-ISIKQIS 59
            IG L+ L+ L L  +  +       P  I +  S ++   +        +     +  S
Sbjct: 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

Query: 60  PLRTLELRNCNTLQSLPKLLL 80
            L    + +    +S+ K   
Sbjct: 160 DLIKDCINSDPQQKSIKKSSR 180

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 13  LKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTL 72
             EL L   +   LP ++     +  + + +N L +LP     +  + L  L+  + N L
Sbjct: 61  FSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP-----ELPASLEYLDACD-NRL 112

Query: 73  QSLPKLL 79
            +LP+L 
Sbjct: 113 STLPELP 119

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 6e-07
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 9   CLSLLKELNLCVNDFQRLPASIGSLSSLKRM----NLVENKLDNLPITISIKQISPLRTL 64
               L+ L++  N  + LPA        +         EN++ ++P   +I  + P  T+
Sbjct: 178 LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP--ENILSLDPTCTI 235

Query: 65  ELRNCNTLQSLPKLLL 80
            L + N L S  +  L
Sbjct: 236 ILED-NPLSSRIRESL 250

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.9 bits (111), Expect = 8e-07
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            + LK L++  N    LP     L  +   N   N+L  LP     +  + L  L +RN 
Sbjct: 119 PASLKHLDVDNNQLTMLPELPALLEYI---NADNNQLTMLP-----ELPTSLEVLSVRN- 169

Query: 70  NTLQSLPKLL 79
           N L  LP+L 
Sbjct: 170 NQLTFLPELP 179

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
              +  L +  N    LP    SL  L   +  +N+L  LP     +  + L+ L++ N 
Sbjct: 79  PPQITVLEITQNALISLPELPASLEYL---DACDNRLSTLP-----ELPASLKHLDVDN- 129

Query: 70  NTLQSLPKLL 79
           N L  LP+L 
Sbjct: 130 NQLTMLPELP 139

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 13  LKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTL 72
           L+ L+ C N    LP    SL  L   ++  N+L  LP     +  + L  +   N N L
Sbjct: 102 LEYLDACDNRLSTLPELPASLKHL---DVDNNQLTMLP-----ELPALLEYINADN-NQL 152

Query: 73  QSLPKLL 79
             LP+L 
Sbjct: 153 TMLPELP 159

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            +LL+ +N   N    LP    SL  L   ++  N+L  LP     +    L  L++   
Sbjct: 139 PALLEYINADNNQLTMLPELPTSLEVL---SVRNNQLTFLP-----ELPESLEALDVST- 189

Query: 70  NTLQSLPKLL 79
           N L+SLP + 
Sbjct: 190 NLLESLPAVP 199

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 1/68 (1%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPL 61
             +++              N    +P +I SL     + L +N L +     S+ Q +  
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR-ESLSQQTAQ 256

Query: 62  RTLELRNC 69
                   
Sbjct: 257 PDYHGPRI 264

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 9/70 (12%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
              L+ L +  N    LP     L  L   +     L  LP        S L  L +   
Sbjct: 80  PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP--------SGLCKLWIFG- 130

Query: 70  NTLQSLPKLL 79
           N L SLP L 
Sbjct: 131 NQLTSLPVLP 140

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            S LKEL +  N    LP     L  L    +  N+L +LP        S L +L +   
Sbjct: 220 PSGLKELIVSGNRLTSLPVLPSELKEL---MVSGNRLTSLP-----MLPSGLLSLSVYR- 270

Query: 70  NTLQSLPKLL 79
           N L  LP+ L
Sbjct: 271 NQLTRLPESL 280

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            S L +L +  N    LP     L  L   ++ +N+L +LP        S L  L   N 
Sbjct: 120 PSGLCKLWIFGNQLTSLPVLPPGLQEL---SVSDNQLASLP-----ALPSELCKLWAYN- 170

Query: 70  NTLQSLPKLL 79
           N L SLP L 
Sbjct: 171 NQLTSLPMLP 180

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            S L+EL++  N    LP     L  L   N   N+L +LP        S L+ L +   
Sbjct: 180 PSGLQELSVSDNQLASLPTLPSELYKLWAYN---NRLTSLP-----ALPSGLKELIVSG- 230

Query: 70  NTLQSLPKLL 79
           N L SLP L 
Sbjct: 231 NRLTSLPVLP 240

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
              L+EL++  N    LPA    L  L       N+L +LP        S L+ L + + 
Sbjct: 140 PPGLQELSVSDNQLASLPALPSELCKL---WAYNNQLTSLP-----MLPSGLQELSVSD- 190

Query: 70  NTLQSLPKLL 79
           N L SLP L 
Sbjct: 191 NQLASLPTLP 200

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            +    LN+  +    LP  +   + +  + + +N L +LP          LRTLE+   
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLP-----ALPPELRTLEVSG- 90

Query: 70  NTLQSLPKLL 79
           N L SLP L 
Sbjct: 91  NQLTSLPVLP 100

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            S LKEL +  N    LP     L SL   ++  N+L  LP   S+  +S   T+ L   
Sbjct: 240 PSELKELMVSGNRLTSLPMLPSGLLSL---SVYRNQLTRLP--ESLIHLSSETTVNLEG- 293

Query: 70  NTLQSLP 76
           N L    
Sbjct: 294 NPLSERT 300

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            S L +L    N    LP     L  L   ++ +N+L +LP        S L  L   N 
Sbjct: 160 PSELCKLWAYNNQLTSLPMLPSGLQEL---SVSDNQLASLP-----TLPSELYKLWAYN- 210

Query: 70  NTLQSLPKLL 79
           N L SLP L 
Sbjct: 211 NRLTSLPALP 220

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            + +  L +  N+   LPA    L +L    +  N+L +LP  +    +  L        
Sbjct: 60  PAHITTLVIPDNNLTSLPALPPELRTL---EVSGNQLTSLP--VLPPGLLELSIFSNPL- 113

Query: 70  NTLQSLPKLL 79
             L +LP  L
Sbjct: 114 THLPALPSGL 123

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQIS 59
            S L  L++  N   RLP S+  LSS   +NL  N L    +    +  S
Sbjct: 260 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 7/81 (8%), Positives = 26/81 (32%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPL 61
            +  +    + +  ++L  N    +  ++    +L+  +L  N      +     +   +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 62  RTLELRNCNTLQSLPKLLLPS 82
           +T+  +    L    +     
Sbjct: 265 QTVAKQTVKKLTGQNEEECTV 285

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 4   LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
           ++     + LK L+L  N    +     S + +  ++L  NKL  +   +       L  
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR--FSQNLEH 241

Query: 64  LELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKL 98
            +LR  N           S  ++V T   +++ KL
Sbjct: 242 FDLRG-NGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 10 LSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
             +KEL+L  N   ++ A  +   + L+ +NL  N L        ++ +S LRTL+L N
Sbjct: 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNN 89

Query: 69 CNTLQSLPKL 78
           N +Q L   
Sbjct: 90 -NYVQELLVG 98

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 6   DIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTL 64
                   K + L  N    L     G  S ++ ++L  N++D +           L  L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 65  ELRNCNTLQSLPKLL 79
            L+  N +  +   +
Sbjct: 175 NLQY-NFIYDVKGQV 188

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 7   IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLEL 66
           +   + L+ LNL  N        + SLS+L+ ++L  N +  L +  S      + TL  
Sbjct: 54  LAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLVGPS------IETLHA 106

Query: 67  RNCNTLQSLPKLLLPS 82
            N N +  +       
Sbjct: 107 AN-NNISRVSCSRGQG 121

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 4   LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
           +Q++     ++ L+   N+  R+  S       K + L  NK+  L   +     S ++ 
Sbjct: 92  VQELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLR-DLDEGCRSRVQY 148

Query: 64  LELRNCNTLQSLPK 77
           L+L+  N + ++  
Sbjct: 149 LDLKL-NEIDTVNF 161

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 10 LSLLKELNLCVNDFQRLPASIGS-LSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           +  K   +  +  ++  AS+     ++K ++L  N L  +     +   + L  L L +
Sbjct: 9  GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSS 67

Query: 69 CNTLQSLP 76
           N L    
Sbjct: 68 -NVLYETL 74

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 4   LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
           L ++   S LK +++  N  ++LP    SL  +       N+L+ LP    ++ +  L  
Sbjct: 146 LPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI---AAGNNQLEELP---ELQNLPFLTA 199

Query: 64  LELRNCNTLQSLPKLL 79
           +   N N+L+ LP L 
Sbjct: 200 IYADN-NSLKKLPDLP 214

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPL 61
           E L ++  L  L  +    N  ++LP    SL S+       N L+ LP    ++ +  L
Sbjct: 186 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI---VAGNNILEELP---ELQNLPFL 239

Query: 62  RTLELRNCNTLQSLPKLL 79
            T+   N N L++LP L 
Sbjct: 240 TTIYADN-NLLKTLPDLP 256

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPL 61
           E L ++  L  L  +    N  + LP    SL +L   N+ +N L +LP     +    L
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEAL---NVRDNYLTDLP-----ELPQSL 279

Query: 62  RTLELRNCNTLQSLPKLL 79
             L++   N    L +L 
Sbjct: 280 TFLDVSE-NIFSGLSELP 296

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 15/81 (18%)

Query: 13  LKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITI--------------SIKQI 58
           L+ L    N    LP    SL SL   N     L +LP  +               ++  
Sbjct: 93  LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 152

Query: 59  SPLRTLELRNCNTLQSLPKLL 79
           S L+ +++ N N+L+ LP L 
Sbjct: 153 SFLKIIDVDN-NSLKKLPDLP 172

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 9/73 (12%)

Query: 7   IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLEL 66
                 L+ELN+  N    LPA    L  L       N L  +P     +    L+ L +
Sbjct: 313 CDLPPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVP-----ELPQNLKQLHV 364

Query: 67  RNCNTLQSLPKLL 79
              N L+  P + 
Sbjct: 365 EY-NPLREFPDIP 376

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 10  LSLLKELNLCVNDFQRLPAS-IGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L  L+ L+L  N    L +S  G LSSLK +NL+ N    L +T     ++ L+TL + N
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 69  CNTLQSLPK 77
             T   + +
Sbjct: 133 VETFSEIRR 141

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
           L +L  L+L  N  Q LP    +L +L  +++  N+L +LP+   ++ +  L+ L L+  
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA-LRGLGELQELYLKG- 133

Query: 70  NTLQSLP 76
           N L++LP
Sbjct: 134 NELKTLP 140

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 13/91 (14%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L  L+EL L  N+ + LP  +      L++++L  N L  LP  +    +  L TL L+ 
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG-LENLDTLLLQE 181

Query: 69  CNTLQSLPKLLLPSYPEKVDTFMLESLSKLF 99
            N+L ++PK            F    L   F
Sbjct: 182 -NSLYTIPK----------GFFGSHLLPFAF 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            + L +LNL   +  +L    G+L  L  ++L  N+L +LP+      +  L  L++   
Sbjct: 54  YTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSF- 109

Query: 70  NTLQSLP 76
           N L SLP
Sbjct: 110 NRLTSLP 116

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 4   LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
           L  +  L L+  L+L  N  + LP ++ +L  L+ +   +N L+N+     +  +  L+ 
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD---GVANLPRLQE 512

Query: 64  LELRNCNTLQSLPKLL 79
           L L N N LQ    + 
Sbjct: 513 LLLCN-NRLQQSAAIQ 527

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPL 61
            +   +  L  L+ L    N  + +   + +L  L+ + L  N+L        +     L
Sbjct: 477 ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 62  RTLELRNCNTLQSLPKL 78
             L L+  N+L     +
Sbjct: 536 VLLNLQG-NSLCQEEGI 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKL-DNLPITISIKQISP 60
            +   +  L+ L+ L L  +      +     +SL  ++L  N L   +    S+   S 
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 61  LRTLELRNCNTLQSLP 76
           L+ L + +        
Sbjct: 128 LKFLNVSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 11/86 (12%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQ-RLPASIGSLSSLKRMNLVENKL-DNLPITISIKQIS 59
           EI Q++  +  L+ L L  ND    +P+ + + ++L  ++L  N+L   +P    I ++ 
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP--KWIGRLE 514

Query: 60  PLRTLELRNCN-------TLQSLPKL 78
            L  L+L N +        L     L
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSL 540

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 7   IGCLSLLKELNLCVNDFQ-RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
           +     L+ L++  N+F   +P  +G  S+L+ +++  NKL     + +I   + L+ L 
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLN 253

Query: 66  LRNCNTLQ-SLPKLLLPS 82
           + + N     +P L L S
Sbjct: 254 ISS-NQFVGPIPPLPLKS 270

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 7   IGCLSLLKELNLCVNDFQ-RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
           +G  S L+ L++  N        +I + + LK +N+  N+       I    +  L+ L 
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG---PIPPLPLKSLQYLS 275

Query: 66  LRNCN 70
           L    
Sbjct: 276 LAENK 280

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 3   ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLR 62
             Q     + LK L+L  N    + ++   L  L+ ++   + L  +        +  L 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 63  TLELRNCN-------TLQSLPKL 78
            L++ + +           L  L
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSL 447

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 3   ILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPITISIKQISPL 61
            L     LS L++L     +   L    IG L +LK +N+  N + +  +      ++ L
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 62  RTLELRNCN-------TLQSLPKL 78
             L+L +          L+ L ++
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQM 175

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 6   DIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTL 64
                  L+ L+L   + Q +   +  SLS L  + L  N + +L +  +   +S L+ L
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKL 105

Query: 65  ELRNCN-------TLQSLPKL 78
                N        +  L  L
Sbjct: 106 VAVETNLASLENFPIGHLKTL 126

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            + LK L+L  N    + ++   L  L+ ++   + L  +        +  L  L++ + 
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 70  NTLQSLPK 77
           +  +    
Sbjct: 432 H-TRVAFN 438

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 10  LSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           LS L++L     +   L    IG L +LK +N+  N + +  +      ++ L  L+L +
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 69  CNTLQSLPK 77
            N +QS+  
Sbjct: 159 -NKIQSIYC 166

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 4   LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
           +  +  L+ +  LNL  N      + + +++ L  + + E+K+ ++     I  ++ L +
Sbjct: 125 ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYS 181

Query: 64  LELRNCNTLQSLPKL 78
           L L   N ++ +  L
Sbjct: 182 LSLNY-NQIEDISPL 195

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 4   LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
           +Q I  L+ L+ LNL  N    +   + +L  L  + +  NK+ ++    +++ ++ LR 
Sbjct: 59  IQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS---ALQNLTNLRE 114

Query: 64  LELRNCNTLQSLPKL 78
           L L   + +  +  L
Sbjct: 115 LYLNE-DNISDISPL 128

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 9   CLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
               L+ L++  N  Q +      ++SL+ ++L  N  D LP+      ++ L  L L  
Sbjct: 98  FNQDLEYLDVSHNRLQNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155

Query: 69  CNTLQSLP 76
               + L 
Sbjct: 156 -AKFRQLD 162

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            + L+ L+L  N    + A+   L  L+ ++   + L  +    +   +  L  L++   
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 70  N-------TLQSLPKL 78
           N           L  L
Sbjct: 435 NTKIDFDGIFLGLTSL 450

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 7/77 (9%), Positives = 25/77 (32%)

Query: 6   DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLE 65
           +    + +  ++L  N    +  ++    +L+  +L  N      +     +   ++T+ 
Sbjct: 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 66  LRNCNTLQSLPKLLLPS 82
            +    L    +     
Sbjct: 269 KQTVKKLTGQNEEECTV 285

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 8e-05
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 4   LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
           ++     + LK L+L  N    +     S + +  ++L  NKL  +   +       L  
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR--FSQNLEH 241

Query: 64  LELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKL 98
            +LR  N           S  ++V T   +++ KL
Sbjct: 242 FDLRG-NGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 6   DIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTL 64
                   K + L  N    L     G  S ++ ++L  N++D +           L  L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 65  ELRNCNTLQSLPKLLL 80
            L+  N +  +   ++
Sbjct: 175 NLQY-NFIYDVKGQVV 189

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 10 LSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
             +KEL+L  N   ++ A  +   + L+ +NL  N L        ++ +S LRTL+L N
Sbjct: 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNN 89

Query: 69 CNTLQSLPKL 78
           N +Q L   
Sbjct: 90 -NYVQELLVG 98

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
           +  L+ L +  N    L      + +LK ++L  N L ++       Q   L  L L + 
Sbjct: 271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--QFDRLENLYLDH- 327

Query: 70  NTLQSLPKLLLPS 82
           N++ +L      +
Sbjct: 328 NSIVTLKLSTHHT 340

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 14/90 (15%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
              L E++L  N+ +++       +  L+R+ +  N+L  L +      I  L+ L+L +
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ--PIPTLKVLDLSH 304

Query: 69  CNTLQSLPKLLLPSYPEKVDTFMLESLSKL 98
            N L  + +          +    + L  L
Sbjct: 305 -NHLLHVER----------NQPQFDRLENL 323

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
              L+ L+L  N   ++        +LK ++L  N  D LPI      +S L+ L L   
Sbjct: 68  NQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST- 124

Query: 70  NTLQSLPKLLL 80
             L+    L +
Sbjct: 125 THLEKSSVLPI 135

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 10  LSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
            S +   N  V+  + +       +S    ++   N L +            L TL L+ 
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE-LETLILQM 357

Query: 69  CNTLQSLPKL 78
            N L+ L K+
Sbjct: 358 -NQLKELSKI 366

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 5   QDIGCLSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
            DI  LS L+ L +  N  Q L  S+      L+ ++L  NKL  +           L+ 
Sbjct: 39  SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS----CHPTVNLKH 94

Query: 64  LELRNCNTLQSLPK 77
           L+L   N   +LP 
Sbjct: 95  LDLSF-NAFDALPI 107

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 8e-05
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
           +  L+ L +  N    L      + +LK ++L  N L ++       Q   L  L L + 
Sbjct: 277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--QFDRLENLYLDH- 333

Query: 70  NTLQSLPKLLLPS 82
           N++ +L      +
Sbjct: 334 NSIVTLKLSTHHT 346

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 14/90 (15%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
              L E++L  N+ +++       +  L+R+ +  N+L  L +      I  L+ L+L +
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ--PIPTLKVLDLSH 310

Query: 69  CNTLQSLPKLLLPSYPEKVDTFMLESLSKL 98
            N L  + +          +    + L  L
Sbjct: 311 -NHLLHVER----------NQPQFDRLENL 329

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 4   LQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLR 62
           + ++  L  L+EL +  N F  +   S   LSSLK++ ++ +++  +    +   ++ L 
Sbjct: 211 MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN-AFDGLASLV 269

Query: 63  TLELRNCNTLQSLPKLLLPSYP 84
            L L + N L SLP  L     
Sbjct: 270 ELNLAH-NNLSSLPHDLFTPLR 290

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 8   GCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELR 67
            C S L+EL+L       LP+ +  LS+LK++ L  NK +NL   IS      L  L ++
Sbjct: 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIK 333

Query: 68  NCNTLQSLP 76
                  L 
Sbjct: 334 GNTKRLELG 342

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 10  LSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           LS L+ LNL  N+   L   +      L+ ++L   +L         + +  L+ L L +
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 69  CN-------TLQSLPKL 78
                        LP L
Sbjct: 435 SLLDISSEQLFDGLPAL 451

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L+ L  LNL  N  Q LP  +   L+ LK + L  N+L +LP  +  K ++ L+ L L  
Sbjct: 75  LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK-LTQLKDLRLYQ 133

Query: 69  CNTLQSLPK 77
            N L+S+P 
Sbjct: 134 -NQLKSVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L+ L +L L  N  Q LP  +   L+SL  +NL  N+L +LP  +   +++ L+ L L N
Sbjct: 51  LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV-FDKLTQLKELAL-N 108

Query: 69  CNTLQSLPK 77
            N LQSLP 
Sbjct: 109 TNQLQSLPD 117

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
              L+ L+L   + Q +      SLS L  + L  N + +L +       S L+ L    
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS-LQKLVAVE 109

Query: 69  CNTLQSLP 76
            N L SL 
Sbjct: 110 TN-LASLE 116

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           LS L++L     +   L     G L +LK +N+  N + +  +      ++ L  L+L +
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 69  CNTLQSLP 76
              +QS+ 
Sbjct: 159 NK-IQSIY 165

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           LS L  L L  N  Q L       LSSL+++  VE  L +L     I  +  L+ L + +
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAH 133

Query: 69  CNTLQSLP 76
            N +QS  
Sbjct: 134 -NLIQSFK 140

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L  L+ L +  N  Q LP  +   L +L  + L  N+L +LP  +    ++ L  L L  
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV-FDSLTKLTYLSLGY 142

Query: 69  CNTLQSLP 76
            N LQSLP
Sbjct: 143 -NELQSLP 149

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L+ L+ L L  N  Q LPA I   L +L+ + + +NKL  LPI +   Q+  L  L L  
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV-FDQLVNLAELRLDR 118

Query: 69  CNTLQSLP 76
            N L+SLP
Sbjct: 119 -NQLKSLP 125

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L  L EL L  N  + LP  +  SL+ L  ++L  N+L +LP  +   +++ L+ L L N
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV-FDKLTSLKELRLYN 166

Query: 69  CNTLQSLP 76
            N L+ +P
Sbjct: 167 -NQLKRVP 173

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
            + LK L+L  N    + ++   L  L+ ++   + L  +        +  L  L++ + 
Sbjct: 77  TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH- 135

Query: 70  NTLQSLP 76
              +   
Sbjct: 136 THTRVAF 142

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L+ LKEL L  N  Q LP  +   L++L  +NL  N+L +LP  +   +++ L  L+L +
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV-FDKLTNLTELDL-S 165

Query: 69  CNTLQSLPK 77
            N LQSLP+
Sbjct: 166 YNQLQSLPE 174

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
           L  ++ L L  N    + A +  L++L  + L  N+L +LP  +   +++ L+ L L   
Sbjct: 62  LPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGV-FDKLTNLKELVLVE- 118

Query: 70  NTLQSLP 76
           N LQSLP
Sbjct: 119 NQLQSLP 125

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L+ L  LNL  N  Q LP  +   L++L  ++L  N+L +LP  +  K ++ L+ L L  
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-LTQLKDLRLYQ 190

Query: 69  CNTLQSLPK 77
            N L+S+P 
Sbjct: 191 -NQLKSVPD 198

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L  L +L L  N    +  +     S ++ + L ENK+  +   + +  +  L+TL L +
Sbjct: 53  LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG-LHQLKTLNLYD 111

Query: 69  CNTLQSLPK 77
            N +  +  
Sbjct: 112 -NQISCVMP 119

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L  LKEL L  N    LP  +  SL+ L  ++L  N+L  LP  +   ++  L+ L +  
Sbjct: 63  LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV-FDRLVHLKELFM-C 120

Query: 69  CNTLQSLPK 77
           CN L  LP+
Sbjct: 121 CNKLTELPR 129

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L  L+ L+L  N    L +S    LSSL  +NL+ N    L  T     ++ L+ L + N
Sbjct: 99  LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 69  CNTLQSLP 76
            +T   + 
Sbjct: 159 MDTFTKIQ 166

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQ-RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISP 60
            I   I  L+ L  L +   +    +P  +  + +L  ++   N L +  +  SI  +  
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPN 150

Query: 61  LRTLELRN 68
           L  +    
Sbjct: 151 LVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 2   EILQDIGCLSLLKELNLCVNDFQ-RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISP 60
            I   +  +  L  L+   N     LP SI SL +L  +    N++ +  I  S    S 
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI-SGAIPDSYGSFSK 174

Query: 61  LRT-LELRNCN 70
           L T + +    
Sbjct: 175 LFTSMTISRNR 185

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 4   LQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLR 62
           + ++  L  L EL+L  N    +   S   L  L+++ ++++++  +    +   +  L 
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN-AFDNLQSLV 258

Query: 63  TLELRNCNTLQSLPKLLLPSYP 84
            + L + N L  LP  L     
Sbjct: 259 EINLAH-NNLTLLPHDLFTPLH 279

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L+ L  L L  N    +P      LS LK + L  N ++++P   +  +I  LR L+L  
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY-AFNRIPSLRRLDLGE 169

Query: 69  CNTLQSLP 76
              L  + 
Sbjct: 170 LKRLSYIS 177

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 14 KELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQ 73
           EL L  N F  +P  + +   L  ++L  N++  L        ++ L TL L + N L+
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLIL-SYNRLR 91

Query: 74 SLPK 77
           +P 
Sbjct: 92 CIPP 95

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L  L+++N   N    +        S +  + L  N+L+N+   +  K +  L+TL LR+
Sbjct: 56  LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM-FKGLESLKTLMLRS 114

Query: 69  CNTLQSLPK 77
            N +  +  
Sbjct: 115 -NRITCVGN 122

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L+ L  LNL  N  Q L A +   L+ L  + L  N+L +LP+ +    ++ L  L L  
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYL-G 115

Query: 69  CNTLQSLP 76
            N L+SLP
Sbjct: 116 GNQLKSLP 123

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L+ L  L L  N    LP  +   L+ L ++ L  N+L +LP  +   +++ L+ L L N
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKLKELRL-N 139

Query: 69  CNTLQSLP 76
            N LQS+P
Sbjct: 140 TNQLQSIP 147

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L  L  L L  N    LP S+   L SL+ + L  NK++ L +       + L  L L +
Sbjct: 79  LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN-LNLLSLYD 137

Query: 69  CNTLQSLPK 77
            N LQ++ K
Sbjct: 138 -NKLQTIAK 145

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 10  LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
           L+ L +L+L  N  Q LP  +   L+ L  + L ENKL +LP  +  K ++ L+ L L  
Sbjct: 51  LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK-LTQLKELALDT 109

Query: 69  CNTLQSLPK 77
            N L+S+P 
Sbjct: 110 -NQLKSVPD 117

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 38.0 bits (88), Expect = 9e-04
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 8   GCLSLLKELNLCVNDFQRLPASIGSL----SSLKRMNLVENKLDNLPITISIKQISPLRT 63
                L+ L L     +       +L      L+ ++L  N L +     S    S L +
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 64  LELRNCNTLQSLPKLLLPS 82
           L L     L+ +PK L   
Sbjct: 258 LNLSF-TGLKQVPKGLPAK 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.45
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.41
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.37
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.34
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.34
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.34
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.32
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.31
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.31
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.29
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.28
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.28
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.27
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.26
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.26
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.26
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.24
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.23
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.22
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.2
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.2
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.2
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.19
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.19
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.16
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.15
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.15
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.15
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.1
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.02
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.02
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.02
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.02
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.02
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.02
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.01
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.01
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.0
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.0
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.99
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.98
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.98
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.95
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.94
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.89
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.84
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.83
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.82
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.8
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.72
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.68
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.56
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.45
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.37
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.37
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.1
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.08
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.74
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.72
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.7
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.63
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.63
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.56
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.49
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.42
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.42
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.3
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.95
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.83
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.71
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.58
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.52
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.37
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.01
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.83

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.45  E-value=4e-13  Score=108.38  Aligned_cols=117  Identities=24%  Similarity=0.354  Sum_probs=80.7

Q ss_pred             ccCccccCCCCCcEEeccCCCC-ccccccccC---------CCCCcEEEeeCCCCcccCcccccccCCccceeeccccCC
Q 036960            2 EILQDIGCLSLLKELNLCVNDF-QRLPASIGS---------LSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNT   71 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l-~~lp~~~~~---------l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~   71 (176)
                      .+|+.++.+++|++|++++|++ ..+|..++.         +++|++|++++|+++.+|..+.  .+++|+.|++++ |.
T Consensus       141 ~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~-N~  217 (328)
T 4fcg_A          141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRN-SP  217 (328)
T ss_dssp             CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGG--GCTTCCEEEEES-SC
T ss_pred             cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhc--CCCCCCEEEccC-CC
Confidence            4677777778888888877644 347766543         7777777777777777777777  777777777777 77


Q ss_pred             CCCCchhhhc--CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCccccc
Q 036960           72 LQSLPKLLLP--SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKLNKSG  122 (176)
Q Consensus        72 l~~lP~~l~~--~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l~~~~  122 (176)
                      ++.+|..+..  +| ++|+++++.....++... ...+++.+++++|..+...+
T Consensus       218 l~~l~~~l~~l~~L-~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p  270 (328)
T 4fcg_A          218 LSALGPAIHHLPKL-EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP  270 (328)
T ss_dssp             CCCCCGGGGGCTTC-CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred             CCcCchhhccCCCC-CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence            7777766543  67 777777776666554433 34567777777776665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.41  E-value=8.5e-13  Score=106.47  Aligned_cols=114  Identities=26%  Similarity=0.364  Sum_probs=71.4

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCC-CcccCccccccc---------CCccceeeccccCC
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENK-LDNLPITISIKQ---------ISPLRTLELRNCNT   71 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~-l~~lP~~~~~~~---------l~~L~~L~l~~cn~   71 (176)
                      ++|..++.+++|++|++++|.++.+|..++.+++|++|++++|+ +..+|..+.  .         +++|+.|++++ |.
T Consensus       118 ~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~--~~~~~~~~~~l~~L~~L~L~~-n~  194 (328)
T 4fcg_A          118 ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA--STDASGEHQGLVNLQSLRLEW-TG  194 (328)
T ss_dssp             CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSE--EEC-CCCEEESTTCCEEEEEE-EC
T ss_pred             chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHh--hccchhhhccCCCCCEEECcC-CC
Confidence            35666677777777777777777777677777777777777654 336665544  3         67777777777 67


Q ss_pred             CCCCchhhhc--CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCccc
Q 036960           72 LQSLPKLLLP--SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKLNK  120 (176)
Q Consensus        72 l~~lP~~l~~--~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l~~  120 (176)
                      ++.+|..+..  +| ++|+++++ .+..++... ....++.+++++|.....
T Consensus       195 l~~lp~~l~~l~~L-~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~  244 (328)
T 4fcg_A          195 IRSLPASIANLQNL-KSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRN  244 (328)
T ss_dssp             CCCCCGGGGGCTTC-CEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred             cCcchHhhcCCCCC-CEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhh
Confidence            7777765543  66 67777655 344443322 345566666666655443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.37  E-value=5.2e-12  Score=96.82  Aligned_cols=108  Identities=24%  Similarity=0.208  Sum_probs=74.8

Q ss_pred             CccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhc
Q 036960            4 LQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      |..+..+++|++|++++|.|+.+|. .+..+++|++|++++|+|+.+|.. +.  .+++|+.|++++ |.++.+|..+..
T Consensus        57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~l~~L~~L~Ls~-N~l~~lp~~~~~  133 (229)
T 3e6j_A           57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD--RLVHLKELFMCC-NKLTELPRGIER  133 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCSCCTTGGG
T ss_pred             HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC--cchhhCeEeccC-CcccccCccccc
Confidence            4556777778888888887777765 457777888888888887777654 56  777888888888 778777766653


Q ss_pred             --CccceeeccCCcCCcccccc--cCCCCccEEEeeCCc
Q 036960           82 --SYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKCL  116 (176)
Q Consensus        82 --~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c~  116 (176)
                        +| ++|+++++ .+..++..  .....++.+.+.+..
T Consensus       134 l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          134 LTHL-THLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CTTC-SEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCCC-CEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence              67 77777765 56665432  134566777776544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.34  E-value=8.5e-12  Score=95.15  Aligned_cols=105  Identities=19%  Similarity=0.273  Sum_probs=59.2

Q ss_pred             cccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh---
Q 036960            6 DIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL---   80 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~---   80 (176)
                      .|..+++|++|++++|.|+.+ |..|..+++|++|++++|+|+.+|.. |.  ++++|+.|++++ |.++.++....   
T Consensus        51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~-N~l~~~~~~~~~~l  127 (220)
T 2v9t_B           51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE--GLFSLQLLLLNA-NKINCLRVDAFQDL  127 (220)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred             HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc--CCCCCCEEECCC-CCCCEeCHHHcCCC
Confidence            455566666666666666664 44566666666666666666666554 45  566666666666 66665543322   


Q ss_pred             cCccceeeccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960           81 PSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKC  115 (176)
Q Consensus        81 ~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c  115 (176)
                      .+| ++|+++++ .++.++..  .....++.+++.+.
T Consensus       128 ~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          128 HNL-NLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             TTC-CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCC-CEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence            155 66666554 34444321  12345556655543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.34  E-value=8.9e-12  Score=93.36  Aligned_cols=108  Identities=20%  Similarity=0.227  Sum_probs=87.9

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      ++|..+.  ++|++|++++|.|+.+|..+..+++|++|++++|.|+.++. .|.  ++++|+.|++++ |.++.+|....
T Consensus        24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~-N~l~~i~~~~f   98 (193)
T 2wfh_A           24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS--NMTQLLTLILSY-NRLRCIPPRTF   98 (193)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCBCCTTTT
T ss_pred             cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHcc--CCCCCCEEECCC-CccCEeCHHHh
Confidence            4666553  58999999999999999999999999999999999998865 588  999999999999 99999886543


Q ss_pred             c---CccceeeccCCcCCccccccc--CCCCccEEEeeCCc
Q 036960           81 P---SYPEKVDTFMLESLSKLFRII--TTRKLTYFIFTKCL  116 (176)
Q Consensus        81 ~---~L~~~L~l~~~~~L~~l~~~~--~~~~l~~l~~~~c~  116 (176)
                      .   +| ++|+++++ .+..++...  ....++.+++.+..
T Consensus        99 ~~l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           99 DGLKSL-RLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             TTCTTC-CEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCC-CEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence            2   78 99999875 577775432  35678888876643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.34  E-value=3.1e-12  Score=93.14  Aligned_cols=101  Identities=17%  Similarity=0.228  Sum_probs=72.7

Q ss_pred             CCCCCcEEeccCCCCc--cccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCC-Cchhhh--cCc
Q 036960            9 CLSLLKELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQS-LPKLLL--PSY   83 (176)
Q Consensus         9 ~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~-lP~~l~--~~L   83 (176)
                      ..++|++|++++|.++  .+|..+..+++|++|++++|.++.+ ..+.  .+++|+.|++++ |.++. +|..+.  .+|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLP--KLPKLKKLELSE-NRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCC--CCSSCCEEEEES-CCCCSCCCHHHHHCTTC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhc--cCCCCCEEECcC-CcCchHHHHHHhhCCCC
Confidence            3467888888888887  6877778888888888888888877 5677  788888888888 77776 664443  377


Q ss_pred             cceeeccCCcCCccccc---ccCCCCccEEEeeCC
Q 036960           84 PEKVDTFMLESLSKLFR---IITTRKLTYFIFTKC  115 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c  115 (176)
                       ++|+++++ .+..++.   ......++.++++++
T Consensus        98 -~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A           98 -THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             -CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             -CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC
Confidence             88888776 5665532   224456777777766

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.32  E-value=2.4e-12  Score=91.90  Aligned_cols=102  Identities=19%  Similarity=0.246  Sum_probs=80.5

Q ss_pred             CCCCCcEEeccCCCCc--cccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCC-Cchhhh--cCc
Q 036960            9 CLSLLKELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQS-LPKLLL--PSY   83 (176)
Q Consensus         9 ~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~-lP~~l~--~~L   83 (176)
                      ..++|+.|++++|.++  .+|..+..+++|++|++++|.++.+ ..+.  .+++|+.|++++ |.++. +|..+.  .+|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~--~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLP--KLNKLKKLELSD-NRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCC--CCTTCCEEECCS-SCCCSCTHHHHHHCTTC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhh--cCCCCCEEECCC-CcccchHHHHhhhCCCC
Confidence            3467899999999998  6888889999999999999999887 6688  899999999999 88877 775543  378


Q ss_pred             cceeeccCCcCCcccc---cccCCCCccEEEeeCCc
Q 036960           84 PEKVDTFMLESLSKLF---RIITTRKLTYFIFTKCL  116 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~---~~~~~~~l~~l~~~~c~  116 (176)
                       ++|+++++ .+..++   .......++.++++++.
T Consensus        91 -~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           91 -THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             -CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             -CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc
Confidence             89999876 466552   22345678888888773

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.31  E-value=1.5e-11  Score=97.54  Aligned_cols=108  Identities=24%  Similarity=0.295  Sum_probs=61.6

Q ss_pred             cCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      +|..+..+++|++|++++|+|+.+|. .+..+++|++|++++|+|+.+|.. +.  .+++|+.|++++ |.++.+|..+.
T Consensus        92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~l~~~~~  168 (290)
T 1p9a_G           92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT--PTPKLEKLSLAN-NNLTELPAGLL  168 (290)
T ss_dssp             CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTT-SCCSCCCTTTT
T ss_pred             CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc--cccCCCEEECCC-CcCCccCHHHh
Confidence            45555566666666666666666543 466666666666666666655543 45  566666666666 66666665443


Q ss_pred             c---CccceeeccCCcCCccccccc-CCCCccEEEeeCC
Q 036960           81 P---SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKC  115 (176)
Q Consensus        81 ~---~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c  115 (176)
                      .   +| ++|+++++ .++.+|... ....++.+.+.+.
T Consensus       169 ~~l~~L-~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          169 NGLENL-DTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             TTCTTC-CEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred             cCcCCC-CEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence            2   55 66666554 455554333 2334556655543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.31  E-value=4e-12  Score=112.77  Aligned_cols=115  Identities=23%  Similarity=0.168  Sum_probs=91.8

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP-   81 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-   81 (176)
                      .|+.+..++.|+.|+|++|.+..+|..+..+++|++|+|++|.|+.+|..++  ++++|+.|+|++ |.++.+|..+.. 
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~-N~l~~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIK--NLSNLRVLDLSH-NRLTSLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGG--GGTTCCEEECTT-SCCSSCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhh--CCCCCCEEeCcC-CcCCccChhhcCC
Confidence            3566788999999999999999999988899999999999999999999899  999999999999 999999987765 


Q ss_pred             -CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCccccc
Q 036960           82 -SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKLNKSG  122 (176)
Q Consensus        82 -~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l~~~~  122 (176)
                       +| ++|+++++ .+..+|..+ ...+|+.|+++++.--...+
T Consensus       293 ~~L-~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          293 FQL-KYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             TTC-SEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             CCC-CEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence             88 99999876 677776544 45678888888765433333

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.31  E-value=7.5e-12  Score=107.28  Aligned_cols=63  Identities=29%  Similarity=0.363  Sum_probs=30.9

Q ss_pred             CCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCch
Q 036960           12 LLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPK   77 (176)
Q Consensus        12 ~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~   77 (176)
                      ++++|+|++|+|+++|+ +|.++++|++|+|++|+|+.+|+ .|.  ++++|++|++++ |+++.+|.
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~-N~l~~l~~  117 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTG-NPIQSLAL  117 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTT-CCCCEECG
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccC-CcCCCCCH
Confidence            44555555555555443 44555555555555555554433 244  455555555555 45554443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=9e-12  Score=93.32  Aligned_cols=86  Identities=20%  Similarity=0.302  Sum_probs=74.1

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      .+|..+..+++|++|++++|.|+.++. .|..+++|++|++++|+|+.+|. .|.  ++++|+.|++++ |.++.+|...
T Consensus        45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~--~l~~L~~L~L~~-N~l~~~~~~~  121 (193)
T 2wfh_A           45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD--GLKSLRLLSLHG-NDISVVPEGA  121 (193)
T ss_dssp             SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECCS-SCCCBCCTTT
T ss_pred             hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC--CCCCCCEEECCC-CCCCeeChhh
Confidence            478889999999999999999999765 69999999999999999998865 588  999999999999 9999999764


Q ss_pred             hc---CccceeeccC
Q 036960           80 LP---SYPEKVDTFM   91 (176)
Q Consensus        80 ~~---~L~~~L~l~~   91 (176)
                      ..   +| ++|++++
T Consensus       122 ~~~l~~L-~~L~L~~  135 (193)
T 2wfh_A          122 FNDLSAL-SHLAIGA  135 (193)
T ss_dssp             TTTCTTC-CEEECCS
T ss_pred             hhcCccc-cEEEeCC
Confidence            43   45 5555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.29  E-value=2.1e-11  Score=92.91  Aligned_cols=107  Identities=21%  Similarity=0.324  Sum_probs=87.2

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      ++|..+.  ++|++|++++|.|+.+|. .+..+++|++|++++|+|+.+ |..|.  ++++|+.|++++ |.++.+|..+
T Consensus        25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~-N~l~~l~~~~   99 (220)
T 2v9t_B           25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ--GLRSLNSLVLYG-NKITELPKSL   99 (220)
T ss_dssp             SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT--TCSSCCEEECCS-SCCCCCCTTT
T ss_pred             cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh--CCcCCCEEECCC-CcCCccCHhH
Confidence            4666654  689999999999999876 799999999999999999977 67799  999999999999 9999999876


Q ss_pred             hc---CccceeeccCCcCCcccccc-c-CCCCccEEEeeCC
Q 036960           80 LP---SYPEKVDTFMLESLSKLFRI-I-TTRKLTYFIFTKC  115 (176)
Q Consensus        80 ~~---~L~~~L~l~~~~~L~~l~~~-~-~~~~l~~l~~~~c  115 (176)
                      +.   +| ++|+++++ .+..++.. . ....++.++++++
T Consensus       100 f~~l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B          100 FEGLFSL-QLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             TTTCTTC-CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCCCCC-CEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC
Confidence            43   78 99999876 46655322 2 3457788877665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=1.2e-11  Score=91.18  Aligned_cols=95  Identities=20%  Similarity=0.245  Sum_probs=46.7

Q ss_pred             cEEeccCCCCccccccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhh---cCccceeec
Q 036960           14 KELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLL---PSYPEKVDT   89 (176)
Q Consensus        14 ~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~---~~L~~~L~l   89 (176)
                      +.+++++|.++.+|..+.  ++|++|++++|+|+.+ |..|.  ++++|+.|++++ |.++.+|..++   .+| ++|++
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L-~~L~L   88 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNS-NKLTAIPTGVFDKLTQL-TQLDL   88 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTCTTC-CEEEC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCC-CCCCccChhHhCCcchh-hEEEC
Confidence            445555555555555443  4555555555555544 33355  555555555555 55555554332   144 55555


Q ss_pred             cCCcCCcccccc--cCCCCccEEEeeCC
Q 036960           90 FMLESLSKLFRI--ITTRKLTYFIFTKC  115 (176)
Q Consensus        90 ~~~~~L~~l~~~--~~~~~l~~l~~~~c  115 (176)
                      +++ .+..++..  ....+++.+++.++
T Consensus        89 ~~N-~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           89 NDN-HLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             CCC-ccceeCHHHhccccCCCEEEeCCC
Confidence            443 34444332  12344555555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.29  E-value=2.6e-11  Score=92.90  Aligned_cols=107  Identities=26%  Similarity=0.350  Sum_probs=88.2

Q ss_pred             ccCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      ++|..+.  ++|++|++++|.|+++ |..+..+++|++|++++|+|+.+|.. +.  .+++|+.|++++ |.++.+|...
T Consensus        33 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~--~l~~L~~L~Ls~-N~l~~l~~~~  107 (229)
T 3e6j_A           33 SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD--SLTQLTVLDLGT-NQLTVLPSAV  107 (229)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTT
T ss_pred             ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc--cCCCcCEEECCC-CcCCccChhH
Confidence            4666553  7899999999999996 66899999999999999999999865 68  999999999999 9999998765


Q ss_pred             hc---CccceeeccCCcCCccccccc-CCCCccEEEeeCC
Q 036960           80 LP---SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKC  115 (176)
Q Consensus        80 ~~---~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c  115 (176)
                      ..   +| ++|+++++ .+..+|... ....++.++++++
T Consensus       108 ~~~l~~L-~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A          108 FDRLVHL-KELFMCCN-KLTELPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             TTTCTTC-CEEECCSS-CCCSCCTTGGGCTTCSEEECCSS
T ss_pred             hCcchhh-CeEeccCC-cccccCcccccCCCCCEEECCCC
Confidence            43   78 99999875 577775443 4567788877764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.28  E-value=2.5e-11  Score=93.88  Aligned_cols=83  Identities=29%  Similarity=0.399  Sum_probs=44.5

Q ss_pred             cccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh---
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL---   80 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~---   80 (176)
                      .+.++++|++|++++|.+++++. .+..+++|++|++++|+++.+|.. +.  .+++|+.|++++ |.++.+|....   
T Consensus        54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l  130 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD--HLTQLDKLYLGG-NQLKSLPSGVFDRL  130 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred             HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc--ccCCCCEEEcCC-CcCCCcChhHhccC
Confidence            35555666666666666655433 355555666666666655555432 44  555555555555 55555554332   


Q ss_pred             cCccceeeccCC
Q 036960           81 PSYPEKVDTFML   92 (176)
Q Consensus        81 ~~L~~~L~l~~~   92 (176)
                      .+| ++|+++++
T Consensus       131 ~~L-~~L~Ls~N  141 (251)
T 3m19_A          131 TKL-KELRLNTN  141 (251)
T ss_dssp             TTC-CEEECCSS
T ss_pred             Ccc-cEEECcCC
Confidence            144 55555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.28  E-value=5.8e-12  Score=100.80  Aligned_cols=86  Identities=23%  Similarity=0.325  Sum_probs=51.6

Q ss_pred             cCccccCCCCCcEEeccC-CCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCC-CCchh
Q 036960            3 ILQDIGCLSLLKELNLCV-NDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQ-SLPKL   78 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~-n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~-~lP~~   78 (176)
                      +|+.++.+++|++|++++ |.+.+ +|..++.+++|++|++++|.++ .+|..+.  ++++|++|++++ |.++ .+|..
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~-N~l~~~~p~~  144 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSY-NALSGTLPPS  144 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCS-SEEESCCCGG
T ss_pred             cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCC-CccCCcCChH
Confidence            556666666666666663 55553 5666666666666666666666 5565566  666666666666 5554 45544


Q ss_pred             hhc--CccceeeccCC
Q 036960           79 LLP--SYPEKVDTFML   92 (176)
Q Consensus        79 l~~--~L~~~L~l~~~   92 (176)
                      +..  +| ++|+++++
T Consensus       145 ~~~l~~L-~~L~L~~N  159 (313)
T 1ogq_A          145 ISSLPNL-VGITFDGN  159 (313)
T ss_dssp             GGGCTTC-CEEECCSS
T ss_pred             HhcCCCC-CeEECcCC
Confidence            433  55 56665544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.28  E-value=1.6e-11  Score=90.07  Aligned_cols=96  Identities=19%  Similarity=0.262  Sum_probs=53.0

Q ss_pred             CcEEeccCCCCccccccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhhc---Cccceee
Q 036960           13 LKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLLP---SYPEKVD   88 (176)
Q Consensus        13 L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~---~L~~~L~   88 (176)
                      .+.+++++|.++.+|..+.  ++|++|++++|+|+.+ |..|.  ++++|+.|++++ |.++.+|...+.   +| ++|+
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L-~~L~   84 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDN-NQLTVLPAGVFDKLTQL-TQLS   84 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCS-SCCCCCCTTTTTTCTTC-CEEE
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhc--CcccCCEEECCC-CCcCccChhhccCCCCC-CEEE
Confidence            4556666666666665442  5566666666666655 33455  666666666666 666666654432   45 5666


Q ss_pred             ccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960           89 TFMLESLSKLFRI--ITTRKLTYFIFTKC  115 (176)
Q Consensus        89 l~~~~~L~~l~~~--~~~~~l~~l~~~~c  115 (176)
                      ++++ .++.++..  .....++.+++++.
T Consensus        85 L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           85 LNDN-QLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence            6544 45544332  12345566666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.27  E-value=5e-12  Score=112.13  Aligned_cols=88  Identities=25%  Similarity=0.303  Sum_probs=77.3

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      .||..+..+++|++|+|++|.|+.+|..++.+++|++|+|++|.|+.+|..++  .+++|+.|+|++ |.++.+|..+..
T Consensus       238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~L~~-N~l~~lp~~~~~  314 (727)
T 4b8c_D          238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG--SCFQLKYFYFFD-NMVTTLPWEFGN  314 (727)
T ss_dssp             CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG--GGTTCSEEECCS-SCCCCCCSSTTS
T ss_pred             CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc--CCCCCCEEECCC-CCCCccChhhhc
Confidence            47888888999999999999999999889999999999999999999999898  999999999999 899999987664


Q ss_pred             --CccceeeccCCc
Q 036960           82 --SYPEKVDTFMLE   93 (176)
Q Consensus        82 --~L~~~L~l~~~~   93 (176)
                        +| ++|+++++.
T Consensus       315 l~~L-~~L~L~~N~  327 (727)
T 4b8c_D          315 LCNL-QFLGVEGNP  327 (727)
T ss_dssp             CTTC-CCEECTTSC
T ss_pred             CCCc-cEEeCCCCc
Confidence              78 888887663

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.27  E-value=4.4e-11  Score=89.84  Aligned_cols=107  Identities=27%  Similarity=0.348  Sum_probs=72.1

Q ss_pred             ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh---c
Q 036960            7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL---P   81 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~---~   81 (176)
                      +..+++|++|++++|+++.+|. .+..+++|++|++++|+++.+|.. +.  .+++|+.|++++ |.++.+|....   .
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l~  124 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD--KLTQLKELALNT-NQLQSLPDGVFDKLT  124 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTCT
T ss_pred             hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhc--CccCCCEEEcCC-CcCcccCHhHhccCC
Confidence            5677777777777777777665 357777778888877777777654 56  777788888877 77777775432   2


Q ss_pred             CccceeeccCCcCCcccccc--cCCCCccEEEeeCCcCc
Q 036960           82 SYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKCLKL  118 (176)
Q Consensus        82 ~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c~~l  118 (176)
                      +| ++|+++++ .+..++..  ....+++.+++.++.-.
T Consensus       125 ~L-~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          125 QL-KDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TC-CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cC-CEEECCCC-ccceeCHHHhccCCCccEEEecCCCee
Confidence            66 77777665 45555432  23456777777765433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.26  E-value=1.6e-11  Score=106.14  Aligned_cols=98  Identities=16%  Similarity=0.233  Sum_probs=72.9

Q ss_pred             CCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cccceeec
Q 036960           12 LLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SYPEKVDT   89 (176)
Q Consensus        12 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L~~~L~l   89 (176)
                      .|+.|++++|.|+++|. ++.+++|+.|++++|+|+.+|..++  .+++|+.|++++ |.++.+| .+..  +| +.|++
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L-~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALA--ALRCLEVLQASD-NALENVD-GVANLPRL-QELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGG--GCTTCCEEECCS-SCCCCCG-GGTTCSSC-CEEEC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhh--cCCCCCEEECCC-CCCCCCc-ccCCCCCC-cEEEC
Confidence            47788888888888875 8888888888888888888888888  888888888888 8888887 5553  67 78888


Q ss_pred             cCCcCCccc--cccc-CCCCccEEEeeCCc
Q 036960           90 FMLESLSKL--FRII-TTRKLTYFIFTKCL  116 (176)
Q Consensus        90 ~~~~~L~~l--~~~~-~~~~l~~l~~~~c~  116 (176)
                      +++ .+..+  |... ...+++.++++++.
T Consensus       516 s~N-~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          516 CNN-RLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             CSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            765 45555  3333 45667777777653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.26  E-value=4.8e-11  Score=92.31  Aligned_cols=110  Identities=23%  Similarity=0.245  Sum_probs=90.4

Q ss_pred             CccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh-
Q 036960            4 LQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL-   80 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~-   80 (176)
                      |..+..+++|++|++++|.++.+|. .+..+++|++|++++|+|+.+|.. +.  .+++|+.|++++ |.++.+|.... 
T Consensus        76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~~  152 (251)
T 3m19_A           76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD--RLTKLKELRLNT-NQLQSIPAGAFD  152 (251)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTT
T ss_pred             HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhc--cCCcccEEECcC-CcCCccCHHHcC
Confidence            4457899999999999999999775 679999999999999999998876 68  899999999999 99999997433 


Q ss_pred             --cCccceeeccCCcCCcccccc--cCCCCccEEEeeCCcCc
Q 036960           81 --PSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKCLKL  118 (176)
Q Consensus        81 --~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c~~l  118 (176)
                        .+| ++|+++++ .+..++..  .....++.+++.++.--
T Consensus       153 ~l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          153 KLTNL-QTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TCTTC-CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCcCC-CEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence              378 99999876 56666442  23567888988876543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.26  E-value=3.4e-11  Score=89.97  Aligned_cols=105  Identities=13%  Similarity=0.191  Sum_probs=64.0

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcc-cCcccccccCCccceeeccccCCCCC-Cchhhhc--
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDN-LPITISIKQISPLRTLELRNCNTLQS-LPKLLLP--   81 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-lP~~~~~~~l~~L~~L~l~~cn~l~~-lP~~l~~--   81 (176)
                      .+..+++|++|++++|.++.++ .+..+++|++|++++|+++. .|..+.  .+++|+.|++++ |.++. .|..+..  
T Consensus        61 ~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~Ls~-n~i~~~~~~~l~~l~  136 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLS--GLTSLTLLDISH-SAHDDSILTKINTLP  136 (197)
T ss_dssp             TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCT--TCTTCCEEECCS-SBCBGGGHHHHTTCS
T ss_pred             HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhc--CCCCCCEEEecC-CccCcHhHHHHhhCC
Confidence            4566666777777766665554 56666777777777777663 455666  677777777777 66653 3433432  


Q ss_pred             CccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           82 SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        82 ~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                      +| ++|+++++..+..++.......++.+++++|
T Consensus       137 ~L-~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          137 KV-NSIDLSYNGAITDIMPLKTLPELKSLNIQFD  169 (197)
T ss_dssp             SC-CEEECCSCTBCCCCGGGGGCSSCCEEECTTB
T ss_pred             CC-CEEEccCCCCccccHhhcCCCCCCEEECCCC
Confidence            56 6666666644555544444455666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=1.9e-11  Score=98.57  Aligned_cols=86  Identities=20%  Similarity=0.198  Sum_probs=73.1

Q ss_pred             ccCccccCCCCCcEEeccC-CCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchh
Q 036960            2 EILQDIGCLSLLKELNLCV-NDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKL   78 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~-n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~   78 (176)
                      .||. |..+++|++|+|++ |.|+.+|. .|+.+++|++|+|++|+|+.+|. .|.  ++++|+.|+|++ |.|+.+|..
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~-N~l~~~~~~   98 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH--FTPRLSRLNLSF-NALESLSWK   98 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG--SCSCCCEEECCS-SCCSCCCST
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc--CCcCCCEEeCCC-CccceeCHH
Confidence            4788 89999999999996 99999774 79999999999999999997765 578  999999999999 999999977


Q ss_pred             hhc--CccceeeccCC
Q 036960           79 LLP--SYPEKVDTFML   92 (176)
Q Consensus        79 l~~--~L~~~L~l~~~   92 (176)
                      ++.  .| +.|++.++
T Consensus        99 ~~~~~~L-~~l~l~~N  113 (347)
T 2ifg_A           99 TVQGLSL-QELVLSGN  113 (347)
T ss_dssp             TTCSCCC-CEEECCSS
T ss_pred             HcccCCc-eEEEeeCC
Confidence            664  46 77777544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.25  E-value=3e-11  Score=103.58  Aligned_cols=108  Identities=18%  Similarity=0.201  Sum_probs=86.5

Q ss_pred             cC-ccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhh
Q 036960            3 IL-QDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus         3 lP-~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      || ..|.++++|++|+|++|+|+.+|+ .|.++++|++|+|++|+|+.+|.. |.  ++++|++|++++ |+++.+|...
T Consensus        67 l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~--~L~~L~~L~Ls~-N~l~~l~~~~  143 (635)
T 4g8a_A           67 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVE-TNLASLENFP  143 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT--TCTTCCEEECTT-SCCCCSTTCC
T ss_pred             CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc--CCCCCCEEECCC-CcCCCCChhh
Confidence            44 468999999999999999999876 689999999999999999999864 78  999999999999 9999998653


Q ss_pred             hc---CccceeeccCCcCCccc--ccc-cCCCCccEEEeeCC
Q 036960           80 LP---SYPEKVDTFMLESLSKL--FRI-ITTRKLTYFIFTKC  115 (176)
Q Consensus        80 ~~---~L~~~L~l~~~~~L~~l--~~~-~~~~~l~~l~~~~c  115 (176)
                      ..   +| ++|+++++ .+..+  +.. .....++.++++++
T Consensus       144 ~~~L~~L-~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          144 IGHLKTL-KELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             CTTCTTC-CEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             hhcCccc-CeeccccC-ccccCCCchhhccchhhhhhcccCc
Confidence            32   78 89999876 34433  222 23466777777665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.24  E-value=2e-11  Score=106.53  Aligned_cols=108  Identities=11%  Similarity=0.122  Sum_probs=83.7

Q ss_pred             cCccccCCCCCcEEeccCCCCcc------------------cccccc--CCCCCcEEEeeCCCCc-ccCcccccccCCcc
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQR------------------LPASIG--SLSSLKRMNLVENKLD-NLPITISIKQISPL   61 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~------------------lp~~~~--~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L   61 (176)
                      ||+.++++++|++|++++|.+++                  +|..++  .+++|++|++++|.+. .+|..++  ++++|
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L  275 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK--ALPEM  275 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT--TCSSC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh--cCCCC
Confidence            78888889999999999999988                  888888  8999999999999866 7888888  89999


Q ss_pred             ceeeccccCC-CC--CCchhhh--------cCccceeeccCCcCCccccc---ccCCCCccEEEeeCC
Q 036960           62 RTLELRNCNT-LQ--SLPKLLL--------PSYPEKVDTFMLESLSKLFR---IITTRKLTYFIFTKC  115 (176)
Q Consensus        62 ~~L~l~~cn~-l~--~lP~~l~--------~~L~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c  115 (176)
                      ++|++++ |. ++  .+|..+.        .+| ++|+++++ .+..+|.   .....+++.++++++
T Consensus       276 ~~L~Ls~-n~~l~~~~lp~~~~~L~~~~~l~~L-~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N  340 (636)
T 4eco_A          276 QLINVAC-NRGISGEQLKDDWQALADAPVGEKI-QIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN  340 (636)
T ss_dssp             CEEECTT-CTTSCHHHHHHHHHHHHHSGGGGTC-CEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSC
T ss_pred             CEEECcC-CCCCccccchHHHHhhhccccCCCC-CEEECCCC-cCCccCchhhhccCCCCCEEeCcCC
Confidence            9999998 76 76  4787654        477 88888766 4556655   223445666666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.24  E-value=1.7e-11  Score=98.08  Aligned_cols=111  Identities=16%  Similarity=0.266  Sum_probs=91.6

Q ss_pred             ccCccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCC-CCchh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQ-SLPKL   78 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~-~lP~~   78 (176)
                      .+|..|+.+++|++|++++|.+++ +|..++.+++|++|++++|.++ .+|..+.  .+++|++|++++ |.++ .+|..
T Consensus        92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~~-N~l~~~~p~~  168 (313)
T 1ogq_A           92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS--SLPNLVGITFDG-NRISGAIPDS  168 (313)
T ss_dssp             CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--GCTTCCEEECCS-SCCEEECCGG
T ss_pred             cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh--cCCCCCeEECcC-CcccCcCCHH
Confidence            478899999999999999999985 8889999999999999999999 7898999  999999999999 9986 88877


Q ss_pred             hhc---CccceeeccCCcCCcccccccCCCCccEEEeeCCc
Q 036960           79 LLP---SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCL  116 (176)
Q Consensus        79 l~~---~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~  116 (176)
                      +..   .| ++|+++++.--..++.......++.++++++.
T Consensus       169 l~~l~~~L-~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~  208 (313)
T 1ogq_A          169 YGSFSKLF-TSMTISRNRLTGKIPPTFANLNLAFVDLSRNM  208 (313)
T ss_dssp             GGCCCTTC-CEEECCSSEEEEECCGGGGGCCCSEEECCSSE
T ss_pred             HhhhhhcC-cEEECcCCeeeccCChHHhCCcccEEECcCCc
Confidence            764   68 89999876422244444444458888877653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.24  E-value=4.7e-11  Score=94.69  Aligned_cols=103  Identities=28%  Similarity=0.420  Sum_probs=68.9

Q ss_pred             cCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc---Cc
Q 036960            8 GCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP---SY   83 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~---~L   83 (176)
                      +.+++|++|++++|.++.+|..+..+++|++|++++|+|+.+|. .|.  ++++|+.|++++ |.++.+|.....   +|
T Consensus        74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR--GLGELQELYLKG-NELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTT--TCTTCCEEECTT-SCCCCCCTTTTTTCTTC
T ss_pred             CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHc--CCCCCCEEECCC-CCCCccChhhcccccCC
Confidence            44566666666666666666667777777777777777777654 467  777777777777 777777765432   66


Q ss_pred             cceeeccCCcCCccccccc--CCCCccEEEeeCC
Q 036960           84 PEKVDTFMLESLSKLFRII--TTRKLTYFIFTKC  115 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~~~--~~~~l~~l~~~~c  115 (176)
                       +.|+++++ .++.++...  ...+++.++++++
T Consensus       151 -~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          151 -EKLSLANN-NLTELPAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             -CEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             -CEEECCCC-cCCccCHHHhcCcCCCCEEECCCC
Confidence             77777665 466664432  3456777776654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.24  E-value=4e-11  Score=89.50  Aligned_cols=108  Identities=21%  Similarity=0.318  Sum_probs=85.3

Q ss_pred             ccCccccCCCCCcEEeccCCCCcccccc--ccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPAS--IGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKL   78 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~   78 (176)
                      ++|..+..  +|++|++++|.|+.++..  ++.+++|++|++++|+|+.+ |..+.  ++++|+.|++++ |.++.++..
T Consensus        22 ~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~   96 (192)
T 1w8a_A           22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE--GASHIQELQLGE-NKIKEISNK   96 (192)
T ss_dssp             SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCS-CCCCEECSS
T ss_pred             cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC--CcccCCEEECCC-CcCCccCHH
Confidence            46766543  899999999999998764  89999999999999999977 67799  999999999999 999888765


Q ss_pred             hh---cCccceeeccCCcCCccc-cccc-CCCCccEEEeeCCc
Q 036960           79 LL---PSYPEKVDTFMLESLSKL-FRII-TTRKLTYFIFTKCL  116 (176)
Q Consensus        79 l~---~~L~~~L~l~~~~~L~~l-~~~~-~~~~l~~l~~~~c~  116 (176)
                      ..   .+| ++|+++++ .+..+ +... ....++.++++++.
T Consensus        97 ~~~~l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           97 MFLGLHQL-KTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SSTTCTTC-CEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             HhcCCCCC-CEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            33   378 89999876 45554 2222 34578888887654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.23  E-value=9.6e-11  Score=85.91  Aligned_cols=110  Identities=24%  Similarity=0.280  Sum_probs=88.8

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      ++|..+  .++|++|++++|+++++|. .++.+++|++|++++|+++.+|.. +.  .+++|+.|++++ |.++.+|...
T Consensus        21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~-N~l~~~~~~~   95 (177)
T 2o6r_A           21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD--KLTKLTILYLHE-NKLQSLPNGV   95 (177)
T ss_dssp             SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTT
T ss_pred             cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc--CCCccCEEECCC-CCccccCHHH
Confidence            355444  3689999999999999876 578999999999999999988765 68  999999999999 9999998764


Q ss_pred             h---cCccceeeccCCcCCccccccc--CCCCccEEEeeCCcCc
Q 036960           80 L---PSYPEKVDTFMLESLSKLFRII--TTRKLTYFIFTKCLKL  118 (176)
Q Consensus        80 ~---~~L~~~L~l~~~~~L~~l~~~~--~~~~l~~l~~~~c~~l  118 (176)
                      .   .+| ++|+++++ .+..++...  ....++.+++.++.-.
T Consensus        96 ~~~l~~L-~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           96 FDKLTQL-KELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             TTTCTTC-CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhCCccc-CEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence            3   378 99999876 677775533  3567888988876543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.23  E-value=6.9e-11  Score=90.07  Aligned_cols=104  Identities=17%  Similarity=0.275  Sum_probs=68.9

Q ss_pred             ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchh-hh--c
Q 036960            7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKL-LL--P   81 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~-l~--~   81 (176)
                      |..+++|++|++++|.|+.++. .+..+++|++|++++|+|+.+|.. +.  .+++|+.|++++ |.++.++.. +.  .
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~~~l~  129 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK--GLESLKTLMLRS-NRITCVGNDSFIGLS  129 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGT--TCSSCCEEECTT-SCCCCBCTTSSTTCT
T ss_pred             hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhc--CCcCCCEEECCC-CcCCeECHhHcCCCc
Confidence            5677777777777777777655 677777777777777777766554 66  777777777777 777766433 32  2


Q ss_pred             CccceeeccCCcCCccc-cccc-CCCCccEEEeeCC
Q 036960           82 SYPEKVDTFMLESLSKL-FRII-TTRKLTYFIFTKC  115 (176)
Q Consensus        82 ~L~~~L~l~~~~~L~~l-~~~~-~~~~l~~l~~~~c  115 (176)
                      +| ++|+++++ .++.+ +... ....++.++++++
T Consensus       130 ~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          130 SV-RLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             TC-SEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             cC-CEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence            66 77777664 45555 2222 3445666766654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.23  E-value=5.8e-11  Score=88.72  Aligned_cols=106  Identities=16%  Similarity=0.203  Sum_probs=88.4

Q ss_pred             CccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCcc-cCcccccccCCccceeeccccCC-CCCCchhhh
Q 036960            4 LQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLDN-LPITISIKQISPLRTLELRNCNT-LQSLPKLLL   80 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~-lP~~~~~~~l~~L~~L~l~~cn~-l~~lP~~l~   80 (176)
                      ++.+..+++|++|++++|.++. .|..++.+++|++|++++|+++. .|..+.  .+++|+.|++++ |. ++.+| .+.
T Consensus        81 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~-n~~i~~~~-~l~  156 (197)
T 4ezg_A           81 YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN--TLPKVNSIDLSY-NGAITDIM-PLK  156 (197)
T ss_dssp             CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHT--TCSSCCEEECCS-CTBCCCCG-GGG
T ss_pred             chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHh--hCCCCCEEEccC-CCCccccH-hhc
Confidence            4578899999999999999998 78899999999999999999994 677789  999999999999 76 89998 454


Q ss_pred             c--CccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           81 P--SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        81 ~--~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                      .  +| ++|+++++ .+..++......+++.+++++.
T Consensus       157 ~l~~L-~~L~l~~n-~i~~~~~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          157 TLPEL-KSLNIQFD-GVHDYRGIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             GCSSC-CEEECTTB-CCCCCTTGGGCSSCCEEEECBC
T ss_pred             CCCCC-CEEECCCC-CCcChHHhccCCCCCEEEeeCc
Confidence            3  78 99999876 4666654455667788877654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.22  E-value=4.8e-11  Score=99.74  Aligned_cols=91  Identities=29%  Similarity=0.408  Sum_probs=62.1

Q ss_pred             CccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhc
Q 036960            4 LQDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      |..|.++++|++|++++|.|+.++ ..+..+++|++|++++|+|+.+|.. +.  .+++|+.|++++ |.++.+|.....
T Consensus        92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~  168 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE--YLSKLRELWLRN-NPIESIPSYAFN  168 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS--SCTTCCEEECCS-CCCCEECTTTTT
T ss_pred             HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc--ccCCCCEEECCC-CCcceeCHhHHh
Confidence            455677777777777777777754 4677777777777777777777654 66  777777777777 777776653332


Q ss_pred             ---CccceeeccCCcCCccc
Q 036960           82 ---SYPEKVDTFMLESLSKL   98 (176)
Q Consensus        82 ---~L~~~L~l~~~~~L~~l   98 (176)
                         +| ++|+++++..+..+
T Consensus       169 ~l~~L-~~L~l~~~~~l~~i  187 (452)
T 3zyi_A          169 RVPSL-MRLDLGELKKLEYI  187 (452)
T ss_dssp             TCTTC-CEEECCCCTTCCEE
T ss_pred             cCCcc-cEEeCCCCCCcccc
Confidence               55 66666665555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.22  E-value=3.1e-11  Score=88.65  Aligned_cols=104  Identities=18%  Similarity=0.214  Sum_probs=75.2

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCC-CCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh---c
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLS-SLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL---P   81 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~---~   81 (176)
                      .+..+.+|++|++++|.++.+|. +..+. +|++|++++|.|+.+ ..+.  .+++|+.|++++ |.++.+|..+.   +
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~--~l~~L~~L~Ls~-N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFP--LLRRLKTLLVNN-NRICRIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCC--CCSSCCEEECCS-SCCCEECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccc--cCCCCCEEECCC-CcccccCcchhhcCC
Confidence            35567788888888888888764 44444 888888888888877 5677  888888888888 88888876542   3


Q ss_pred             CccceeeccCCcCCccccc---ccCCCCccEEEeeCCc
Q 036960           82 SYPEKVDTFMLESLSKLFR---IITTRKLTYFIFTKCL  116 (176)
Q Consensus        82 ~L~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c~  116 (176)
                      +| ++|+++++ .+..++.   ......++.++++++.
T Consensus        89 ~L-~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           89 DL-TELILTNN-SLVELGDLDPLASLKSLTYLCILRNP  124 (176)
T ss_dssp             TC-CEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             CC-CEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence            77 88888765 4566644   2245567777777664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.21  E-value=1.4e-11  Score=109.48  Aligned_cols=94  Identities=19%  Similarity=0.283  Sum_probs=80.7

Q ss_pred             cCccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCC-CCchhh
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQ-SLPKLL   79 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~-~lP~~l   79 (176)
                      +|..++.+++|++|++++|++++ +|.+++.+++|+.|++++|+++ .+|..++  ++++|+.|++++ |++. .+|..+
T Consensus       624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~--~L~~L~~LdLs~-N~l~g~ip~~l  700 (768)
T 3rgz_A          624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG--DLRGLNILDLSS-NKLDGRIPQAM  700 (768)
T ss_dssp             CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCS-SCCEECCCGGG
T ss_pred             CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh--CCCCCCEEECCC-CcccCcCChHH
Confidence            57778889999999999999997 8999999999999999999999 8999999  999999999999 8885 888777


Q ss_pred             hc--CccceeeccCCcCCccccc
Q 036960           80 LP--SYPEKVDTFMLESLSKLFR  100 (176)
Q Consensus        80 ~~--~L~~~L~l~~~~~L~~l~~  100 (176)
                      ..  +| ++|+++++.--..+|.
T Consensus       701 ~~l~~L-~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          701 SALTML-TEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             GGCCCC-SEEECCSSEEEEECCS
T ss_pred             hCCCCC-CEEECcCCcccccCCC
Confidence            64  78 8899887643334443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.21  E-value=5.7e-11  Score=99.28  Aligned_cols=108  Identities=17%  Similarity=0.257  Sum_probs=78.7

Q ss_pred             CccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc
Q 036960            4 LQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      |..|.++++|++|++++|.++.+|. .+..+++|++|++++|+|+.+|. .+.  ++++|+.|++++|+.++.+|.....
T Consensus       116 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~~~~l~~i~~~~~~  193 (452)
T 3zyi_A          116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN--RVPSLMRLDLGELKKLEYISEGAFE  193 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT--TCTTCCEEECCCCTTCCEECTTTTT
T ss_pred             hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHh--cCCcccEEeCCCCCCccccChhhcc
Confidence            4668889999999999999999876 48889999999999999998876 477  7888888888887777777754332


Q ss_pred             ---CccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           82 ---SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        82 ---~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                         +| ++|+++++ .+..++......+++.++++++
T Consensus       194 ~l~~L-~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          194 GLFNL-KYLNLGMC-NIKDMPNLTPLVGLEELEMSGN  228 (452)
T ss_dssp             TCTTC-CEEECTTS-CCSSCCCCTTCTTCCEEECTTS
T ss_pred             CCCCC-CEEECCCC-cccccccccccccccEEECcCC
Confidence               56 77777654 4555544444444555554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.21  E-value=1.2e-10  Score=91.03  Aligned_cols=68  Identities=38%  Similarity=0.536  Sum_probs=32.4

Q ss_pred             cccCCCCCcEEeccCCCCcccccc-ccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPAS-IGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      .|..+++|++|++++|.++.+|.. +..+++|++|++++|+++.+|.. +.  .+++|+.|++++ |.++.+|
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~  125 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD--QLVNLAELRLDR-NQLKSLP  125 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT--TCSSCCEEECCS-SCCCCCC
T ss_pred             HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc--cccCCCEEECCC-CccCeeC
Confidence            344555555555555555554442 34455555555555555544432 33  444444444444 4444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.21  E-value=5.9e-10  Score=87.22  Aligned_cols=105  Identities=29%  Similarity=0.395  Sum_probs=51.7

Q ss_pred             ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh---c
Q 036960            7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL---P   81 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~---~   81 (176)
                      +..+++|++|++++|.++++|. .++.+++|++|++++|+++.+|.. +.  .+++|+.|++++ |.++.+|....   .
T Consensus       105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~~~~~~~l~  181 (272)
T 3rfs_A          105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD--KLTNLTELDLSY-NQLQSLPEGVFDKLT  181 (272)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTCT
T ss_pred             hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc--cCccCCEEECCC-CCcCccCHHHhcCCc
Confidence            3445555555555555555443 245555555555555555544433 34  555555555555 55555554321   1


Q ss_pred             CccceeeccCCcCCcccccc--cCCCCccEEEeeCCc
Q 036960           82 SYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKCL  116 (176)
Q Consensus        82 ~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c~  116 (176)
                      +| ++|+++++ .+..++..  .....++.+++.++.
T Consensus       182 ~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          182 QL-KDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             TC-CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cC-CEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC
Confidence            45 55555544 34333221  123455556555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.20  E-value=3.6e-11  Score=94.11  Aligned_cols=80  Identities=19%  Similarity=0.237  Sum_probs=42.6

Q ss_pred             ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccce
Q 036960            7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEK   86 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~~   86 (176)
                      +..+++|++|++++|.++.+| .+..+++|++|++++|+|+.+|. +.  .+++|+.|++++ |.++.+|.....+| ++
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~--~l~~L~~L~L~~-N~l~~l~~~~~~~L-~~  110 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LK--DLTKLEELSVNR-NRLKNLNGIPSACL-SR  110 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GT--TCSSCCEEECCS-SCCSCCTTCCCSSC-CE
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hc--cCCCCCEEECCC-CccCCcCccccCcc-cE
Confidence            344555555555555555555 45555555555555555555544 55  555555555555 55555543222344 45


Q ss_pred             eeccCC
Q 036960           87 VDTFML   92 (176)
Q Consensus        87 L~l~~~   92 (176)
                      |+++++
T Consensus       111 L~L~~N  116 (263)
T 1xeu_A          111 LFLDNN  116 (263)
T ss_dssp             EECCSS
T ss_pred             EEccCC
Confidence            554443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.20  E-value=7e-11  Score=98.40  Aligned_cols=90  Identities=28%  Similarity=0.450  Sum_probs=59.5

Q ss_pred             ccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc-
Q 036960            5 QDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP-   81 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-   81 (176)
                      ..|.++++|++|++++|.++.++ ..|..+++|++|++++|+|+.+|. .+.  .+++|+.|++++ |.++.+|..... 
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~-N~i~~~~~~~~~~  158 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV--YLSKLKELWLRN-NPIESIPSYAFNR  158 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC--SCSSCCEEECCS-CCCCEECTTTTTT
T ss_pred             HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh--ccccCceeeCCC-CcccccCHHHhhh
Confidence            45667777777777777777754 467777777777777777777765 366  777777777777 777666653322 


Q ss_pred             --CccceeeccCCcCCccc
Q 036960           82 --SYPEKVDTFMLESLSKL   98 (176)
Q Consensus        82 --~L~~~L~l~~~~~L~~l   98 (176)
                        +| ++|+++++..+..+
T Consensus       159 l~~L-~~L~l~~~~~l~~i  176 (440)
T 3zyj_A          159 IPSL-RRLDLGELKRLSYI  176 (440)
T ss_dssp             CTTC-CEEECCCCTTCCEE
T ss_pred             Cccc-CEeCCCCCCCccee
Confidence              55 66666554444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.20  E-value=7.3e-11  Score=98.32  Aligned_cols=107  Identities=21%  Similarity=0.300  Sum_probs=76.0

Q ss_pred             ccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc-
Q 036960            5 QDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP-   81 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-   81 (176)
                      ..|.++++|++|++++|+++.+|. .+..+++|++|++++|+|+.+|. .+.  ++++|+.|++++|+.++.+|..... 
T Consensus       106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~l~~~~~l~~i~~~~~~~  183 (440)
T 3zyj_A          106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN--RIPSLRRLDLGELKRLSYISEGAFEG  183 (440)
T ss_dssp             GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT--TCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred             hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhh--hCcccCEeCCCCCCCcceeCcchhhc
Confidence            567889999999999999998876 68889999999999999887765 466  7778888888776667766654332 


Q ss_pred             --CccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           82 --SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        82 --~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                        +| ++|+++++ .++.+++.....+++.++++++
T Consensus       184 l~~L-~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          184 LSNL-RYLNLAMC-NLREIPNLTPLIKLDELDLSGN  217 (440)
T ss_dssp             CSSC-CEEECTTS-CCSSCCCCTTCSSCCEEECTTS
T ss_pred             cccc-CeecCCCC-cCccccccCCCcccCEEECCCC
Confidence              56 66776654 4555544444444555555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.19  E-value=1.5e-10  Score=90.67  Aligned_cols=105  Identities=30%  Similarity=0.355  Sum_probs=64.9

Q ss_pred             cccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh---
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL---   80 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~---   80 (176)
                      .+..+++|++|++++|.++++|. .++.+++|++|++++|+++.+|.. +.  .+++|+.|++++ |.++.+|....   
T Consensus        80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~-n~l~~~~~~~~~~l  156 (272)
T 3rfs_A           80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD--KLTNLTYLNLAH-NQLQSLPKGVFDKL  156 (272)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred             hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc--cCCCCCEEECCC-CccCccCHHHhccC
Confidence            45666667777777777666554 356677777777777777766544 56  677777777777 67766665432   


Q ss_pred             cCccceeeccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960           81 PSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKC  115 (176)
Q Consensus        81 ~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c  115 (176)
                      .+| ++|+++++ .+..++..  .....++.++++++
T Consensus       157 ~~L-~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          157 TNL-TELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             TTC-CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccC-CEEECCCC-CcCccCHHHhcCCccCCEEECCCC
Confidence            256 67777665 45554332  23456666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.19  E-value=1.7e-10  Score=90.08  Aligned_cols=81  Identities=31%  Similarity=0.401  Sum_probs=46.5

Q ss_pred             cCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh---cC
Q 036960            8 GCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL---PS   82 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~---~~   82 (176)
                      ..+++|++|++++|.++.+|. .+..+++|++|++++|+++.+|.. +.  .+++|+.|++++ |.++.+|....   .+
T Consensus        82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~  158 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD--SLTKLTYLSLGY-NELQSLPKGVFDKLTS  158 (270)
T ss_dssp             SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred             cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC--cCcCCCEEECCC-CcCCccCHhHccCCcc
Confidence            556666666666666666554 345666666666666666655433 45  566666666666 56655554322   14


Q ss_pred             ccceeeccCC
Q 036960           83 YPEKVDTFML   92 (176)
Q Consensus        83 L~~~L~l~~~   92 (176)
                      | ++|+++++
T Consensus       159 L-~~L~L~~n  167 (270)
T 2o6q_A          159 L-KELRLYNN  167 (270)
T ss_dssp             C-CEEECCSS
T ss_pred             c-ceeEecCC
Confidence            5 55555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.19  E-value=5e-11  Score=88.95  Aligned_cols=82  Identities=22%  Similarity=0.304  Sum_probs=68.8

Q ss_pred             ccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchh-hhc--
Q 036960            7 IGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKL-LLP--   81 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~-l~~--   81 (176)
                      ++.+++|++|++++|.|+++ |..++.+++|++|++++|+|+.+|.. +.  ++++|+.|++++ |.++.++.. +..  
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l~  126 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL--GLHQLKTLNLYD-NQISCVMPGSFEHLN  126 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST--TCTTCCEEECCS-SCCCEECTTSSTTCT
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCC-CcCCeeCHHHhhcCC
Confidence            88999999999999999996 67899999999999999999987654 88  999999999999 999876433 322  


Q ss_pred             CccceeeccCC
Q 036960           82 SYPEKVDTFML   92 (176)
Q Consensus        82 ~L~~~L~l~~~   92 (176)
                      +| ++|+++++
T Consensus       127 ~L-~~L~L~~N  136 (192)
T 1w8a_A          127 SL-TSLNLASN  136 (192)
T ss_dssp             TC-CEEECTTC
T ss_pred             CC-CEEEeCCC
Confidence            55 66666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.18  E-value=1.1e-10  Score=85.63  Aligned_cols=86  Identities=30%  Similarity=0.432  Sum_probs=73.0

Q ss_pred             cCc-cccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhh
Q 036960            3 ILQ-DIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus         3 lP~-~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      +|+ .+..+++|++|++++|.++.+|. .++.+++|++|++++|+|+.+|.. +.  .+++|+.|++++ |.++.+|..+
T Consensus        43 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~-N~l~~~~~~~  119 (177)
T 2o6r_A           43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD--KLTQLKELALDT-NQLKSVPDGI  119 (177)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCSCCCTTT
T ss_pred             eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhh--CCcccCEEECcC-CcceEeCHHH
Confidence            444 46889999999999999999876 479999999999999999988775 68  899999999999 9999999765


Q ss_pred             hc---CccceeeccCC
Q 036960           80 LP---SYPEKVDTFML   92 (176)
Q Consensus        80 ~~---~L~~~L~l~~~   92 (176)
                      ..   +| ++|+++++
T Consensus       120 ~~~l~~L-~~L~l~~N  134 (177)
T 2o6r_A          120 FDRLTSL-QKIWLHTN  134 (177)
T ss_dssp             TTTCTTC-CEEECCSS
T ss_pred             hcCCccc-CEEEecCC
Confidence            43   56 67777655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.18  E-value=1.3e-10  Score=92.96  Aligned_cols=106  Identities=17%  Similarity=0.270  Sum_probs=77.9

Q ss_pred             cCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhh
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      +|..+.  +++++|++++|.++++|. .++.+++|++|++++|.++.+ |..+.  ++++|++|++++ |.++.+|..++
T Consensus        46 lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~l~~l~~~~~  120 (330)
T 1xku_A           46 VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA--PLVKLERLYLSK-NQLKELPEKMP  120 (330)
T ss_dssp             CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCS-SCCSBCCSSCC
T ss_pred             cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc--CCCCCCEEECCC-CcCCccChhhc
Confidence            555443  578889999999988766 688899999999999998876 67788  899999999999 88888888777


Q ss_pred             cCccceeeccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960           81 PSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKC  115 (176)
Q Consensus        81 ~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c  115 (176)
                      .+| ++|+++++ .+..++..  .....++.++++++
T Consensus       121 ~~L-~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n  155 (330)
T 1xku_A          121 KTL-QELRVHEN-EITKVRKSVFNGLNQMIVVELGTN  155 (330)
T ss_dssp             TTC-CEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS
T ss_pred             ccc-cEEECCCC-cccccCHhHhcCCccccEEECCCC
Confidence            788 88888765 34444221  12344555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.17  E-value=5.9e-11  Score=90.99  Aligned_cols=105  Identities=14%  Similarity=0.175  Sum_probs=60.3

Q ss_pred             cccCCCCCcEEeccCCC-Cccccc-cccCCCCCcEEEeeC-CCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc
Q 036960            6 DIGCLSLLKELNLCVND-FQRLPA-SIGSLSSLKRMNLVE-NKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~-l~~lp~-~~~~l~~L~~L~l~~-n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      .+.++++|++|++++|. ++.+|. .+..+++|++|++++ |+++.+|. .|.  ++++|+.|++++ |.++.+|. +..
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~--~l~~L~~L~l~~-n~l~~lp~-~~~  125 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK--ELPLLKFLGIFN-TGLKMFPD-LTK  125 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE--CCTTCCEEEEEE-ECCCSCCC-CTT
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC--CCCCCCEEeCCC-CCCccccc-ccc
Confidence            45666667777776664 666554 566666677777766 66666653 356  666666666666 66666664 222


Q ss_pred             --Cccc---eeeccCCcCCcccccc--cCCCCcc-EEEeeCC
Q 036960           82 --SYPE---KVDTFMLESLSKLFRI--ITTRKLT-YFIFTKC  115 (176)
Q Consensus        82 --~L~~---~L~l~~~~~L~~l~~~--~~~~~l~-~l~~~~c  115 (176)
                        +| +   +|+++++..++.++..  .....++ .++++++
T Consensus       126 l~~L-~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C          126 VYST-DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN  166 (239)
T ss_dssp             CCBC-CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred             cccc-ccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence              34 4   5666555445544332  1233455 5555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.17  E-value=1.3e-10  Score=94.58  Aligned_cols=102  Identities=20%  Similarity=0.227  Sum_probs=65.4

Q ss_pred             CCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc---Cc
Q 036960            9 CLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP---SY   83 (176)
Q Consensus         9 ~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~---~L   83 (176)
                      .+++|++|+|++|+|+.++. .|..+++|++|++++|+|+.+|. .|.  ++++|+.|++++ |.+..++.....   +|
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L  138 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS--DLQALEVLLLYN-NHIVVVDRNAFEDMAQL  138 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCS-SCCCEECTTTTTTCTTC
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhC--CCcCCCEEECCC-CcccEECHHHhCCcccC
Confidence            67777777777777777654 57777777777777777776654 366  777777777777 777666433222   56


Q ss_pred             cceeeccCCcCCccccccc-----CCCCccEEEeeCC
Q 036960           84 PEKVDTFMLESLSKLFRII-----TTRKLTYFIFTKC  115 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~~~-----~~~~l~~l~~~~c  115 (176)
                       ++|+++++ .+..++...     ....++.++++++
T Consensus       139 -~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          139 -QKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             -CEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             -CEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence             77777654 455554432     2456666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.17  E-value=1.5e-10  Score=92.88  Aligned_cols=107  Identities=21%  Similarity=0.229  Sum_probs=81.2

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      ++|..+  .++|++|++++|.+++++. .+..+++|++|++++|+++.+ |..+.  ++++|++|++++ |.++.+|..+
T Consensus        47 ~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~-n~l~~l~~~~  121 (332)
T 2ft3_A           47 AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS--PLRKLQKLYISK-NHLVEIPPNL  121 (332)
T ss_dssp             SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST--TCTTCCEEECCS-SCCCSCCSSC
T ss_pred             ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh--CcCCCCEEECCC-CcCCccCccc
Confidence            356555  3578899999999888654 788999999999999998876 66688  899999999999 8898888877


Q ss_pred             hcCccceeeccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960           80 LPSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKC  115 (176)
Q Consensus        80 ~~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c  115 (176)
                      +.+| ++|+++++ .+..++..  ....+++.++++++
T Consensus       122 ~~~L-~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A          122 PSSL-VELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN  157 (332)
T ss_dssp             CTTC-CEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC
T ss_pred             cccC-CEEECCCC-ccCccCHhHhCCCccCCEEECCCC
Confidence            7788 88888765 45555432  23456666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.17  E-value=1e-12  Score=98.39  Aligned_cols=107  Identities=15%  Similarity=0.180  Sum_probs=89.9

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP-   81 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-   81 (176)
                      +|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+.  .+++|+.|++++ |.++.+| .+.. 
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~--~~~~L~~L~L~~-N~l~~l~-~~~~l  114 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDA--VADTLEELWISY-NQIASLS-GIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHH--HHHHCSEEEEEE-EECCCHH-HHHHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhh--cCCcCCEEECcC-CcCCcCC-ccccC
Confidence            4458899999999999999999999 89999999999999999999998888  889999999999 9999988 4543 


Q ss_pred             -CccceeeccCCcCCccccc---ccCCCCccEEEeeCCc
Q 036960           82 -SYPEKVDTFMLESLSKLFR---IITTRKLTYFIFTKCL  116 (176)
Q Consensus        82 -~L~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c~  116 (176)
                       +| ++|+++++ .+..++.   .....+++.+++.++.
T Consensus       115 ~~L-~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          115 VNL-RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHS-SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CCC-CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence             78 99999876 4665533   3355678888888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.17  E-value=2.8e-10  Score=85.41  Aligned_cols=106  Identities=25%  Similarity=0.305  Sum_probs=86.2

Q ss_pred             cCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      +|..+  .++|++|++++|.++.+|. .++.+++|++|++++|+++.+|.. +.  .+++|++|++++ |.++.+|....
T Consensus        22 ~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~l~~~~~~~~   96 (208)
T 2o6s_A           22 VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN--KLTSLTYLNLST-NQLQSLPNGVF   96 (208)
T ss_dssp             CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTT
T ss_pred             CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC--CCCCcCEEECCC-CcCCccCHhHh
Confidence            55444  4689999999999999876 478999999999999999988765 68  899999999999 99999987643


Q ss_pred             ---cCccceeeccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960           81 ---PSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKC  115 (176)
Q Consensus        81 ---~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c  115 (176)
                         .+| ++|+++++ .+..++..  ....+++.++++++
T Consensus        97 ~~l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A           97 DKLTQL-KELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN  134 (208)
T ss_dssp             TTCTTC-CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCccCC-CEEEcCCC-cCcccCHhHhccCCcCCEEECCCC
Confidence               278 99999876 56666543  24567888888775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.17  E-value=6.6e-11  Score=90.73  Aligned_cols=113  Identities=14%  Similarity=0.203  Sum_probs=87.3

Q ss_pred             cCc-cccCCCCCcEEeccC-CCCccccc-cccCCCCCcEEEeeCCCCcccCcccccccCCccc---eeeccccC-CCCCC
Q 036960            3 ILQ-DIGCLSLLKELNLCV-NDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLR---TLELRNCN-TLQSL   75 (176)
Q Consensus         3 lP~-~l~~l~~L~~L~L~~-n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~---~L~l~~cn-~l~~l   75 (176)
                      +|+ .|.++++|++|++++ |.++.+|. .+..+++|++|++++|+++.+|. +.  .+++|+   .|++++ | .++.+
T Consensus        71 i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~--~l~~L~~L~~L~l~~-N~~l~~i  146 (239)
T 2xwt_C           71 LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LT--KVYSTDIFFILEITD-NPYMTSI  146 (239)
T ss_dssp             ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CT--TCCBCCSEEEEEEES-CTTCCEE
T ss_pred             eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cc--cccccccccEEECCC-Ccchhhc
Confidence            444 678899999999998 89999775 68899999999999999999987 77  888888   999999 7 88888


Q ss_pred             chhhhc---Cccc-eeeccCCcCCccccccc-CCCCccEEEeeCCcCcccc
Q 036960           76 PKLLLP---SYPE-KVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKLNKS  121 (176)
Q Consensus        76 P~~l~~---~L~~-~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l~~~  121 (176)
                      |.....   +| + +|+++++ .++.++... ...+++.++++++..+...
T Consensus       147 ~~~~~~~l~~L-~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i  195 (239)
T 2xwt_C          147 PVNAFQGLCNE-TLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVI  195 (239)
T ss_dssp             CTTTTTTTBSS-EEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEE
T ss_pred             Ccccccchhcc-eeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccC
Confidence            865433   67 7 8888765 466665433 2346788888877555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.16  E-value=6.6e-11  Score=106.90  Aligned_cols=108  Identities=16%  Similarity=0.134  Sum_probs=78.6

Q ss_pred             cCccccCCCCCcEEeccCCCCcc------------------cccccc--CCCCCcEEEeeCCCCc-ccCcccccccCCcc
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQR------------------LPASIG--SLSSLKRMNLVENKLD-NLPITISIKQISPL   61 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~------------------lp~~~~--~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L   61 (176)
                      ||+.|+++++|++|+|++|.|++                  +|..++  .+++|++|++++|.+. .+|..++  ++++|
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~--~L~~L  517 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY--DLPEL  517 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG--GCSSC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh--CCCCC
Confidence            78888888888888888888888                  888877  8888888888888855 7788888  88888


Q ss_pred             ceeeccccCC-CCC--Cchhhhc---------CccceeeccCCcCCccccc---ccCCCCccEEEeeCC
Q 036960           62 RTLELRNCNT-LQS--LPKLLLP---------SYPEKVDTFMLESLSKLFR---IITTRKLTYFIFTKC  115 (176)
Q Consensus        62 ~~L~l~~cn~-l~~--lP~~l~~---------~L~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c  115 (176)
                      +.|++++ |. ++.  +|..+..         +| ++|+++++ .+..+|.   .....+++.++++++
T Consensus       518 ~~L~Ls~-N~~lsg~~iP~~i~~L~~~~~~l~~L-~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N  583 (876)
T 4ecn_A          518 QSLNIAC-NRGISAAQLKADWTRLADDEDTGPKI-QIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN  583 (876)
T ss_dssp             CEEECTT-CTTSCHHHHHHHHHHHHHCTTTTTTC-CEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTS
T ss_pred             CEEECcC-CCCcccccchHHHHhhhhcccccCCc-cEEEeeCC-cCCccCChhhhhcCCCCCEEECCCC
Confidence            8888888 76 653  7765542         56 77777665 3445554   223445555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.16  E-value=7.5e-11  Score=95.36  Aligned_cols=89  Identities=26%  Similarity=0.351  Sum_probs=52.3

Q ss_pred             cccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCch--hhh-
Q 036960            6 DIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPK--LLL-   80 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~--~l~-   80 (176)
                      .+.++++|++|++++|.+++++ ..++.+++|++|++++|+++.+|.. +.  ++++|++|++++ |.++.+|.  .+. 
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~-n~l~~l~~~~~~~~  147 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK--PLSSLTFLNLLG-NPYKTLGETSLFSH  147 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT--TCTTCSEEECTT-CCCSSSCSSCSCTT
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC--CCccCCEEECCC-CCCcccCchhhhcc
Confidence            4556666666666666666643 3466666666666666666666554 55  666666666666 66666664  122 


Q ss_pred             -cCccceeeccCCcCCccc
Q 036960           81 -PSYPEKVDTFMLESLSKL   98 (176)
Q Consensus        81 -~~L~~~L~l~~~~~L~~l   98 (176)
                       .+| ++|+++++..+..+
T Consensus       148 l~~L-~~L~l~~n~~~~~~  165 (353)
T 2z80_A          148 LTKL-QILRVGNMDTFTKI  165 (353)
T ss_dssp             CTTC-CEEEEEESSSCCEE
T ss_pred             CCCC-cEEECCCCcccccc
Confidence             155 66666555434433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.16  E-value=1.1e-10  Score=88.94  Aligned_cols=84  Identities=19%  Similarity=0.223  Sum_probs=70.2

Q ss_pred             ccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchh-hhc
Q 036960            5 QDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKL-LLP   81 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~-l~~   81 (176)
                      ..|.++++|++|++++|.++.+|. .+..+++|++|++++|+|+.+ |..+.  .+++|+.|++++ |.++.++.. +..
T Consensus        75 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~  151 (220)
T 2v70_A           75 GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI--GLSSVRLLSLYD-NQITTVAPGAFDT  151 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST--TCTTCSEEECTT-SCCCCBCTTTTTT
T ss_pred             HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC--CCccCCEEECCC-CcCCEECHHHhcC
Confidence            468999999999999999999766 589999999999999999977 66788  999999999999 999888533 332


Q ss_pred             --CccceeeccCC
Q 036960           82 --SYPEKVDTFML   92 (176)
Q Consensus        82 --~L~~~L~l~~~   92 (176)
                        +| ++|+++++
T Consensus       152 l~~L-~~L~L~~N  163 (220)
T 2v70_A          152 LHSL-STLNLLAN  163 (220)
T ss_dssp             CTTC-CEEECCSC
T ss_pred             CCCC-CEEEecCc
Confidence              55 56666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.16  E-value=1.8e-10  Score=94.21  Aligned_cols=105  Identities=19%  Similarity=0.216  Sum_probs=81.8

Q ss_pred             ccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--
Q 036960            5 QDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--   81 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--   81 (176)
                      +.+..+++|++|++++|.++++ |..+..+++|++|++++|+++.+|..+.  .+++|+.|++++ |.++.+|..+..  
T Consensus       242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~l~~L~~L~L~~-n~l~~~~~~~~~l~  318 (390)
T 3o6n_A          242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ--PIPTLKVLDLSH-NHLLHVERNQPQFD  318 (390)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSS--CCTTCCEEECCS-SCCCCCGGGHHHHT
T ss_pred             HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccC--CCCCCCEEECCC-CcceecCccccccC
Confidence            3567788888999999888884 6688888899999999999888887777  888999999999 888888876653  


Q ss_pred             CccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           82 SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        82 ~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                      +| ++|+++++ .+..++ ......++.++++++
T Consensus       319 ~L-~~L~L~~N-~i~~~~-~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          319 RL-ENLYLDHN-SIVTLK-LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             TC-SEEECCSS-CCCCCC-CCTTCCCSEEECCSS
T ss_pred             cC-CEEECCCC-ccceeC-chhhccCCEEEcCCC
Confidence            78 88888776 465552 344556777777665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.15  E-value=1.5e-10  Score=84.88  Aligned_cols=103  Identities=17%  Similarity=0.236  Sum_probs=81.8

Q ss_pred             ccCCC-CCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCccc-ccccCCccceeeccccCCCCCCch--hhhc-
Q 036960            7 IGCLS-LLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITI-SIKQISPLRTLELRNCNTLQSLPK--LLLP-   81 (176)
Q Consensus         7 l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~-~~~~l~~L~~L~l~~cn~l~~lP~--~l~~-   81 (176)
                      +..+. +|++|++++|.++++ ..++.+++|++|++++|+|+.+|..+ .  .+++|+.|++++ |.++.+|.  .+.. 
T Consensus        37 ~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~-N~i~~~~~~~~l~~l  112 (176)
T 1a9n_A           37 LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTN-NSLVELGDLDPLASL  112 (176)
T ss_dssp             GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH--HCTTCCEEECCS-CCCCCGGGGGGGGGC
T ss_pred             hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhh--cCCCCCEEECCC-CcCCcchhhHhhhcC
Confidence            44444 999999999999998 68999999999999999999998764 8  999999999999 99999996  4443 


Q ss_pred             -CccceeeccCCcCCcccccc-----cCCCCccEEEeeCC
Q 036960           82 -SYPEKVDTFMLESLSKLFRI-----ITTRKLTYFIFTKC  115 (176)
Q Consensus        82 -~L~~~L~l~~~~~L~~l~~~-----~~~~~l~~l~~~~c  115 (176)
                       +| ++|+++++ .+..++..     .....++.+++..+
T Consensus       113 ~~L-~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          113 KSL-TYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             TTC-CEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCC-CEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence             78 89999876 35555442     23455666666544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.15  E-value=2.8e-10  Score=82.63  Aligned_cols=110  Identities=21%  Similarity=0.240  Sum_probs=90.7

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcc-cCcccccccCCccceeeccccCCCCCCc--hh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDN-LPITISIKQISPLRTLELRNCNTLQSLP--KL   78 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-lP~~~~~~~l~~L~~L~l~~cn~l~~lP--~~   78 (176)
                      .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|+++. +|..+.  .+++|+.|++++ |.++.+|  ..
T Consensus        40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~  115 (168)
T 2ell_A           40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAE--KLPNLTHLNLSG-NKLKDISTLEP  115 (168)
T ss_dssp             BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH--HCTTCCEEECBS-SSCCSSGGGGG
T ss_pred             hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHh--hCCCCCEEeccC-CccCcchhHHH
Confidence            4788888999999999999999999 789999999999999999997 777777  899999999999 9999987  34


Q ss_pred             hhc--CccceeeccCCcCCccccc-----ccCCCCccEEEeeCCcC
Q 036960           79 LLP--SYPEKVDTFMLESLSKLFR-----IITTRKLTYFIFTKCLK  117 (176)
Q Consensus        79 l~~--~L~~~L~l~~~~~L~~l~~-----~~~~~~l~~l~~~~c~~  117 (176)
                      +..  +| ++|+++++ .+..++.     ......++.+++.+|..
T Consensus       116 l~~l~~L-~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          116 LKKLECL-KSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             GSSCSCC-CEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             HhcCCCC-CEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            443  78 99999887 4665544     22456788888777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.15  E-value=3.1e-10  Score=88.74  Aligned_cols=100  Identities=25%  Similarity=0.288  Sum_probs=59.5

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY   83 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L   83 (176)
                      .+..+++|++|++++|.++++|. +..+++|++|++++|+++.+|. +.  . ++|+.|++++ |.++.+| .+..  +|
T Consensus        58 ~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~-~~--~-~~L~~L~L~~-N~l~~~~-~l~~l~~L  130 (263)
T 1xeu_A           58 GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG-IP--S-ACLSRLFLDN-NELRDTD-SLIHLKNL  130 (263)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTT-CC--C-SSCCEEECCS-SCCSBSG-GGTTCTTC
T ss_pred             HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCc-cc--c-CcccEEEccC-CccCCCh-hhcCcccc
Confidence            56677778888888887777765 7777777777777777776653 33  3 5566666666 5555554 2322  45


Q ss_pred             cceeeccCCcCCcccccccCCCCccEEEeeC
Q 036960           84 PEKVDTFMLESLSKLFRIITTRKLTYFIFTK  114 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~  114 (176)
                       +.|+++++ .++.++.......++.+++++
T Consensus       131 -~~L~Ls~N-~i~~~~~l~~l~~L~~L~L~~  159 (263)
T 1xeu_A          131 -EILSIRNN-KLKSIVMLGFLSKLEVLDLHG  159 (263)
T ss_dssp             -CEEECTTS-CCCBCGGGGGCTTCCEEECTT
T ss_pred             -cEEECCCC-cCCCChHHccCCCCCEEECCC
Confidence             55555543 344443333334444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.15  E-value=4e-11  Score=95.49  Aligned_cols=106  Identities=13%  Similarity=0.150  Sum_probs=70.5

Q ss_pred             CccccCCCCCcEEeccCCCCcc---ccc--cccCCCCCcEEEeeCCCCcccCcc----cccccCCccceeeccccCCCCC
Q 036960            4 LQDIGCLSLLKELNLCVNDFQR---LPA--SIGSLSSLKRMNLVENKLDNLPIT----ISIKQISPLRTLELRNCNTLQS   74 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~---lp~--~~~~l~~L~~L~l~~n~l~~lP~~----~~~~~l~~L~~L~l~~cn~l~~   74 (176)
                      |..++.+++|++|++++|++.+   ++.  .++.+++|++|++++|+++.+|..    +.  .+++|++|++++ |.++.
T Consensus       162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~--~l~~L~~L~Ls~-N~l~~  238 (310)
T 4glp_A          162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA--AGVQPHSLDLSH-NSLRA  238 (310)
T ss_dssp             TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH--HTCCCSSEECTT-SCCCC
T ss_pred             HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh--cCCCCCEEECCC-CCCCc
Confidence            4567788888888888887654   332  346777888888888887766542    45  667788888888 77766


Q ss_pred             C-chhhh-----cCccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           75 L-PKLLL-----PSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        75 l-P~~l~-----~~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                      + |..+.     ++| ++|+++++ .++.+|.... .+++.++++++
T Consensus       239 ~~p~~~~~~~~~~~L-~~L~Ls~N-~l~~lp~~~~-~~L~~L~Ls~N  282 (310)
T 4glp_A          239 TVNPSAPRCMWSSAL-NSLNLSFA-GLEQVPKGLP-AKLRVLDLSSN  282 (310)
T ss_dssp             CCCSCCSSCCCCTTC-CCEECCSS-CCCSCCSCCC-SCCSCEECCSC
T ss_pred             cchhhHHhccCcCcC-CEEECCCC-CCCchhhhhc-CCCCEEECCCC
Confidence            5 54433     266 77777665 4666654433 56677776654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.15  E-value=1.9e-10  Score=81.96  Aligned_cols=93  Identities=19%  Similarity=0.290  Sum_probs=79.5

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcc-cCcccccccCCccceeeccccCCCCCCc--hh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDN-LPITISIKQISPLRTLELRNCNTLQSLP--KL   78 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-lP~~~~~~~l~~L~~L~l~~cn~l~~lP--~~   78 (176)
                      .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+.  .+++|+.|++++ |.++.+|  ..
T Consensus        33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~ls~-N~i~~~~~~~~  108 (149)
T 2je0_A           33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE--KCPNLTHLNLSG-NKIKDLSTIEP  108 (149)
T ss_dssp             BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH--HCTTCCEEECTT-SCCCSHHHHGG
T ss_pred             HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh--hCCCCCEEECCC-CcCCChHHHHH
Confidence            4788889999999999999999999 789999999999999999997 777777  899999999999 9999876  44


Q ss_pred             hhc--CccceeeccCCcCCccccc
Q 036960           79 LLP--SYPEKVDTFMLESLSKLFR  100 (176)
Q Consensus        79 l~~--~L~~~L~l~~~~~L~~l~~  100 (176)
                      +..  +| ++|+++++ .+..++.
T Consensus       109 ~~~l~~L-~~L~l~~N-~l~~~~~  130 (149)
T 2je0_A          109 LKKLENL-KSLDLFNC-EVTNLND  130 (149)
T ss_dssp             GGGCTTC-CEEECTTC-GGGGSTT
T ss_pred             HhhCCCC-CEEeCcCC-cccchHH
Confidence            443  78 89999887 4655543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.15  E-value=3.1e-10  Score=90.57  Aligned_cols=65  Identities=23%  Similarity=0.422  Sum_probs=30.8

Q ss_pred             ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960            7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      +..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .+.  .+++|+.|++++ |.++.+|
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~--~l~~L~~L~l~~-n~l~~~~  123 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIA--GLQSIKTLDLTS-TQITDVT  123 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGT--TCTTCCEEECTT-SCCCCCG
T ss_pred             hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhc--CCCCCCEEECCC-CCCCCch
Confidence            4445555555555555555443 444555555555555444443 233  444444444444 4444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.15  E-value=2.9e-10  Score=90.72  Aligned_cols=104  Identities=20%  Similarity=0.289  Sum_probs=83.7

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP-   81 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-   81 (176)
                      +|+ +..+++|++|++++|.++.+| .+..+++|++|++++|+++.+|. +.  .+++|+.|++++ |.++.+|. +.. 
T Consensus        78 ~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~-n~l~~~~~-l~~l  150 (308)
T 1h6u_A           78 LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LA--GLSNLQVLYLDL-NQITNISP-LAGL  150 (308)
T ss_dssp             CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GT--TCTTCCEEECCS-SCCCCCGG-GGGC
T ss_pred             Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hc--CCCCCCEEECCC-CccCcCcc-ccCC
Confidence            455 788899999999999998886 68889999999999999998875 77  899999999999 89988884 443 


Q ss_pred             -CccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           82 -SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        82 -~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                       +| ++|+++++ .+..++......+++.++++++
T Consensus       151 ~~L-~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          151 TNL-QYLSIGNA-QVSDLTPLANLSKLTTLKADDN  183 (308)
T ss_dssp             TTC-CEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred             CCc-cEEEccCC-cCCCChhhcCCCCCCEEECCCC
Confidence             78 88998876 5666655445667788877765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.15  E-value=3.1e-10  Score=91.11  Aligned_cols=103  Identities=21%  Similarity=0.329  Sum_probs=76.7

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY   83 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L   83 (176)
                      .+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+.  .+++|++|++++ |.++.+|. +..  +|
T Consensus        61 ~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~--~l~~L~~L~l~~-n~i~~~~~-~~~l~~L  134 (347)
T 4fmz_A           61 GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQ--NLTNLRELYLNE-DNISDISP-LANLTKM  134 (347)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT--TCTTCSEEECTT-SCCCCCGG-GTTCTTC
T ss_pred             hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHc--CCCcCCEEECcC-CcccCchh-hccCCce
Confidence            36778888888888888888776 888888888888888888775 477  888888888888 88888774 332  67


Q ss_pred             cceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           84 PEKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                       ++|+++++..+..++.......++.+.+++|
T Consensus       135 -~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~  165 (347)
T 4fmz_A          135 -YSLNLGANHNLSDLSPLSNMTGLNYLTVTES  165 (347)
T ss_dssp             -CEEECTTCTTCCCCGGGTTCTTCCEEECCSS
T ss_pred             -eEEECCCCCCcccccchhhCCCCcEEEecCC
Confidence             7888877766665544444555666665554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.14  E-value=2.9e-10  Score=89.18  Aligned_cols=38  Identities=26%  Similarity=0.333  Sum_probs=15.9

Q ss_pred             ccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCC
Q 036960            7 IGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVEN   44 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n   44 (176)
                      +..+++|++|++++|.++++ |..++.+++|++|++++|
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            33444444444444444442 233444444444444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.14  E-value=3.1e-10  Score=89.92  Aligned_cols=79  Identities=23%  Similarity=0.288  Sum_probs=44.9

Q ss_pred             ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Ccc
Q 036960            7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SYP   84 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L~   84 (176)
                      +..+++|++|++++|.+++++. +..+++|++|++++|.++.+|. +.  .+++|+.|++++ |.++.++ .+..  +| 
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~-n~i~~~~-~l~~l~~L-  136 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LK--DLKKLKSLSLEH-NGISDIN-GLVHLPQL-  136 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GT--TCTTCCEEECTT-SCCCCCG-GGGGCTTC-
T ss_pred             HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hc--cCCCCCEEECCC-CcCCCCh-hhcCCCCC-
Confidence            4556666666666666666554 6666666666666666665543 55  556666666666 5555554 2222  45 


Q ss_pred             ceeeccCC
Q 036960           85 EKVDTFML   92 (176)
Q Consensus        85 ~~L~l~~~   92 (176)
                      ++|+++++
T Consensus       137 ~~L~l~~n  144 (291)
T 1h6t_A          137 ESLYLGNN  144 (291)
T ss_dssp             CEEECCSS
T ss_pred             CEEEccCC
Confidence            55555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.14  E-value=3.7e-10  Score=88.60  Aligned_cols=107  Identities=22%  Similarity=0.296  Sum_probs=70.5

Q ss_pred             CccccCCCCCcEEeccCCC-Cccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhh
Q 036960            4 LQDIGCLSLLKELNLCVND-FQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~-l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      |..+..+++|++|++++|. ++.+ |..+..+++|++|++++|.++.+ |..+.  ++++|+.|++++ |.++.+|....
T Consensus        73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~~~~~  149 (285)
T 1ozn_A           73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR--GLAALQYLYLQD-NALQALPDDTF  149 (285)
T ss_dssp             TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTT
T ss_pred             HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh--CCcCCCEEECCC-CcccccCHhHh
Confidence            5567777777777777775 7765 55677777777777777777766 44566  777777777777 77777765432


Q ss_pred             ---cCccceeeccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960           81 ---PSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKC  115 (176)
Q Consensus        81 ---~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c  115 (176)
                         .+| ++|+++++ .+..++..  .....++.++++++
T Consensus       150 ~~l~~L-~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n  187 (285)
T 1ozn_A          150 RDLGNL-THLFLHGN-RISSVPERAFRGLHSLDRLLLHQN  187 (285)
T ss_dssp             TTCTTC-CEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ccCCCc-cEEECCCC-cccccCHHHhcCccccCEEECCCC
Confidence               266 77777665 45555332  23445666666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.13  E-value=2.3e-10  Score=95.02  Aligned_cols=115  Identities=17%  Similarity=0.198  Sum_probs=89.5

Q ss_pred             cCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCC-chhh
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSL-PKLL   79 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~l-P~~l   79 (176)
                      +|..++.+++|++|++++|.++++ |..++.+++|++|++++|.++.+ |..+.  .+++|+.|++++ |.++.+ |..+
T Consensus       291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~  367 (455)
T 3v47_A          291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE--NLDKLEVLDLSY-NHIRALGDQSF  367 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT--TCTTCCEEECCS-SCCCEECTTTT
T ss_pred             chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc--CcccCCEEECCC-CcccccChhhc
Confidence            466788899999999999999985 55889999999999999999977 45678  899999999999 888777 4444


Q ss_pred             hc--CccceeeccCCcCCccccccc--CCCCccEEEeeCCcCccccc
Q 036960           80 LP--SYPEKVDTFMLESLSKLFRII--TTRKLTYFIFTKCLKLNKSG  122 (176)
Q Consensus        80 ~~--~L~~~L~l~~~~~L~~l~~~~--~~~~l~~l~~~~c~~l~~~~  122 (176)
                      ..  +| ++|+++++ .++.++...  ....++.++++++.--...+
T Consensus       368 ~~l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          368 LGLPNL-KELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCTTC-CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccccc-cEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            43  78 89999875 577765432  45678888888766544444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.12  E-value=1.5e-10  Score=98.31  Aligned_cols=82  Identities=17%  Similarity=0.259  Sum_probs=55.8

Q ss_pred             ccCCCCCcEEeccCCCCcccc---ccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCc
Q 036960            7 IGCLSLLKELNLCVNDFQRLP---ASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSY   83 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L   83 (176)
                      ++.+++|++|++++|.++++|   ..++.+++|++|++++|+++.+|..+.  .+++|+.|++++ |.++.+|..++.+|
T Consensus       357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~--~~~~L~~L~Ls~-N~l~~l~~~~~~~L  433 (549)
T 2z81_A          357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ--WPEKMRFLNLSS-TGIRVVKTCIPQTL  433 (549)
T ss_dssp             TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCC--CCTTCCEEECTT-SCCSCCCTTSCTTC
T ss_pred             hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhc--ccccccEEECCC-CCcccccchhcCCc
Confidence            456667777777777776654   246677777777777777777777777  777777777777 77777765555455


Q ss_pred             cceeeccCC
Q 036960           84 PEKVDTFML   92 (176)
Q Consensus        84 ~~~L~l~~~   92 (176)
                       ++|+++++
T Consensus       434 -~~L~Ls~N  441 (549)
T 2z81_A          434 -EVLDVSNN  441 (549)
T ss_dssp             -SEEECCSS
T ss_pred             -eEEECCCC
Confidence             55555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.12  E-value=4.2e-10  Score=90.92  Aligned_cols=110  Identities=17%  Similarity=0.198  Sum_probs=89.0

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccC-cccccccCCccceeeccccCCCCCCchhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLP-ITISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP-~~~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      ++|..+.  ++|++|++++|.++++|. .+..+++|++|++++|+++.++ ..+.  ++++|++|++++ |.++.+|...
T Consensus        45 ~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~l~~~~~~~  119 (353)
T 2z80_A           45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS--SLGSLEHLDLSY-NYLSNLSSSW  119 (353)
T ss_dssp             SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCS-SCCSSCCHHH
T ss_pred             ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC--CCCCCCEEECCC-CcCCcCCHhH
Confidence            4676654  589999999999999877 7999999999999999999774 5689  999999999999 9999999763


Q ss_pred             -h--cCccceeeccCCcCCccccc---ccCCCCccEEEeeCCcCc
Q 036960           80 -L--PSYPEKVDTFMLESLSKLFR---IITTRKLTYFIFTKCLKL  118 (176)
Q Consensus        80 -~--~~L~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c~~l  118 (176)
                       .  .+| ++|+++++ .+..++.   .....+++.++++++..+
T Consensus       120 ~~~l~~L-~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A          120 FKPLSSL-TFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             HTTCTTC-SEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             hCCCccC-CEEECCCC-CCcccCchhhhccCCCCcEEECCCCccc
Confidence             3  278 99999876 5666654   224567788888776433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.12  E-value=3.6e-10  Score=89.43  Aligned_cols=108  Identities=23%  Similarity=0.311  Sum_probs=61.0

Q ss_pred             CccccCCCCCcEEeccCCCCcc--ccccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhh
Q 036960            4 LQDIGCLSLLKELNLCVNDFQR--LPASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      |..+..+++|++|++++|.+++  +|..+..+++|++|++++|+++.+ |..+.  .+++|+.|++++ |.++.++....
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~  219 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN--SLSSLQVLNMSH-NNFFSLDTFPY  219 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTT-SCCSBCCSGGG
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc--CCCCCCEEECCC-CccCccChhhc
Confidence            3445556666666666666654  555666666666666666666655 44566  666666666666 66666554222


Q ss_pred             ---cCccceeeccCCcCCccc-ccccC-C-CCccEEEeeCCc
Q 036960           81 ---PSYPEKVDTFMLESLSKL-FRIIT-T-RKLTYFIFTKCL  116 (176)
Q Consensus        81 ---~~L~~~L~l~~~~~L~~l-~~~~~-~-~~l~~l~~~~c~  116 (176)
                         .+| ++|+++++. +... +.... . ..++.++++++.
T Consensus       220 ~~l~~L-~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          220 KCLNSL-QVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TTCTTC-CEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             cCcccC-CEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence               256 666666553 3322 22221 1 256666665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.12  E-value=5.7e-10  Score=88.37  Aligned_cols=101  Identities=21%  Similarity=0.288  Sum_probs=65.3

Q ss_pred             ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Ccc
Q 036960            7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SYP   84 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L~   84 (176)
                      +..+++|++|++++|.++.+|. ++.+++|++|++++|+++.++ .+.  .+++|+.|++++ |.++.++ .+..  +| 
T Consensus        86 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~--~l~~L~~L~l~~-n~l~~~~-~l~~l~~L-  158 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLV--HLPQLESLYLGN-NKITDIT-VLSRLTKL-  158 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGG--GCTTCCEEECCS-SCCCCCG-GGGGCTTC-
T ss_pred             cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhc--CCCCCCEEEccC-CcCCcch-hhccCCCC-
Confidence            6677777777777777777653 777777777777777777663 466  677777777777 7776664 3332  56 


Q ss_pred             ceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           85 EKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        85 ~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                      ++|+++++ .+..++.......++.++++++
T Consensus       159 ~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          159 DTLSLEDN-QISDIVPLAGLTKLQNLYLSKN  188 (291)
T ss_dssp             SEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred             CEEEccCC-ccccchhhcCCCccCEEECCCC
Confidence            66766655 4544443334445566655544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.12  E-value=3.1e-10  Score=98.10  Aligned_cols=91  Identities=24%  Similarity=0.319  Sum_probs=80.6

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCC--chhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSL--PKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~l--P~~l   79 (176)
                      .+|. ++.+++|++|++++|.|+.+|..++.+++|++|++++|+|+.+| .++  .+++|+.|++++ |.++.+  |..+
T Consensus       455 ~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~--~l~~L~~L~Ls~-N~l~~~~~p~~l  529 (567)
T 1dce_A          455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVA--NLPRLQELLLCN-NRLQQSAAIQPL  529 (567)
T ss_dssp             SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGT--TCSSCCEEECCS-SCCCSSSTTGGG
T ss_pred             CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccC--CCCCCcEEECCC-CCCCCCCCcHHH
Confidence            4676 89999999999999999999999999999999999999999998 889  999999999999 999988  7776


Q ss_pred             hc--CccceeeccCCcCCcccc
Q 036960           80 LP--SYPEKVDTFMLESLSKLF   99 (176)
Q Consensus        80 ~~--~L~~~L~l~~~~~L~~l~   99 (176)
                      ..  +| +.|+++++ .+..++
T Consensus       530 ~~l~~L-~~L~L~~N-~l~~~~  549 (567)
T 1dce_A          530 VSCPRL-VLLNLQGN-SLCQEE  549 (567)
T ss_dssp             GGCTTC-CEEECTTS-GGGGSS
T ss_pred             hcCCCC-CEEEecCC-cCCCCc
Confidence            64  78 89999876 455553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.11  E-value=2.8e-10  Score=98.42  Aligned_cols=107  Identities=19%  Similarity=0.195  Sum_probs=86.0

Q ss_pred             CccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960            4 LQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP-   81 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-   81 (176)
                      ++.++.+++|++|++++|.+++ .|..++.+++|++|++++|.++.+|..+.  .+++|+.|++++ |.+..+|..+.. 
T Consensus       247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~l~~L~~L~Ls~-N~l~~i~~~~~~l  323 (597)
T 3oja_B          247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ--PIPTLKVLDLSH-NHLLHVERNQPQF  323 (597)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSS--CCTTCCEEECCS-SCCCCCGGGHHHH
T ss_pred             ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccc--cCCCCcEEECCC-CCCCccCcccccC
Confidence            3557788999999999999988 46789999999999999999999888888  899999999999 999999877653 


Q ss_pred             -CccceeeccCCcCCcccccccCCCCccEEEeeCCc
Q 036960           82 -SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCL  116 (176)
Q Consensus        82 -~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~  116 (176)
                       +| ++|+++++ .+..++ ......++.++++++.
T Consensus       324 ~~L-~~L~L~~N-~l~~~~-~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          324 DRL-ENLYLDHN-SIVTLK-LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             TTC-SEEECCSS-CCCCCC-CCTTCCCSEEECCSSC
T ss_pred             CCC-CEEECCCC-CCCCcC-hhhcCCCCEEEeeCCC
Confidence             78 89999876 455552 3345567777776654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=5.1e-10  Score=81.97  Aligned_cols=85  Identities=26%  Similarity=0.398  Sum_probs=71.3

Q ss_pred             ccCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      ++|..+  .++|++|++++|.|+++ |..+..+++|++|++++|+|+.+|.. |.  ++++|+.|++++ |.++.+|...
T Consensus        23 ~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~-N~l~~~~~~~   97 (170)
T 3g39_A           23 SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD--KLTQLTQLSLND-NQLKSIPRGA   97 (170)
T ss_dssp             SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTT
T ss_pred             ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc--CCCCCCEEECCC-CccCEeCHHH
Confidence            467666  37899999999999997 55799999999999999999999876 68  999999999999 9999999764


Q ss_pred             hc---CccceeeccCC
Q 036960           80 LP---SYPEKVDTFML   92 (176)
Q Consensus        80 ~~---~L~~~L~l~~~   92 (176)
                      ..   +| ++|++++.
T Consensus        98 ~~~l~~L-~~L~L~~N  112 (170)
T 3g39_A           98 FDNLKSL-THIWLLNN  112 (170)
T ss_dssp             TTTCTTC-CEEECCSS
T ss_pred             hcCCCCC-CEEEeCCC
Confidence            42   55 66666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.10  E-value=1.2e-10  Score=92.93  Aligned_cols=106  Identities=14%  Similarity=0.176  Sum_probs=74.2

Q ss_pred             CccccCCCCCcEEeccCCCCcc---ccccc--cCCCCCcEEEeeCCCCcccC---cc-cccccCCccceeeccccCCCCC
Q 036960            4 LQDIGCLSLLKELNLCVNDFQR---LPASI--GSLSSLKRMNLVENKLDNLP---IT-ISIKQISPLRTLELRNCNTLQS   74 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~---lp~~~--~~l~~L~~L~l~~n~l~~lP---~~-~~~~~l~~L~~L~l~~cn~l~~   74 (176)
                      |..++.+++|++|++++|++.+   +|..+  +.+++|++|++++|+|+.+|   .. +.  .+++|+.|++++ |.++.
T Consensus       166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--~l~~L~~L~Ls~-N~l~~  242 (312)
T 1wwl_A          166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA--ARVQLQGLDLSH-NSLRD  242 (312)
T ss_dssp             TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH--TTCCCSEEECTT-SCCCS
T ss_pred             HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh--cCCCCCEEECCC-CcCCc
Confidence            3678888888888888888755   34444  78888888888888888443   22 35  678888888888 88866


Q ss_pred             Cc-hh-hh--cCccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           75 LP-KL-LL--PSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        75 lP-~~-l~--~~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                      .+ .. +.  .+| ++|+++++ .++.+|.... ..++.++++++
T Consensus       243 ~~~~~~~~~l~~L-~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N  284 (312)
T 1wwl_A          243 AAGAPSCDWPSQL-NSLNLSFT-GLKQVPKGLP-AKLSVLDLSYN  284 (312)
T ss_dssp             SCCCSCCCCCTTC-CEEECTTS-CCSSCCSSCC-SEEEEEECCSS
T ss_pred             ccchhhhhhcCCC-CEEECCCC-ccChhhhhcc-CCceEEECCCC
Confidence            44 12 21  367 88888775 4666655444 66777777765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.09  E-value=5.1e-10  Score=96.23  Aligned_cols=106  Identities=17%  Similarity=0.176  Sum_probs=71.6

Q ss_pred             ccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCch-hhhc
Q 036960            5 QDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPK-LLLP   81 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~-~l~~   81 (176)
                      ..|.++++|++|++++|.++++ |..|+.+++|++|++++|.++.+ |..|+  ++++|++|++++ |.+..+|. .+..
T Consensus        50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~-n~l~~~~~~~~~~  126 (606)
T 3vq2_A           50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS--GLTSLENLVAVE-TKLASLESFPIGQ  126 (606)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST--TCTTCCEEECTT-SCCCCSSSSCCTT
T ss_pred             hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC--CcccCCEEEccC-CccccccccccCC
Confidence            3577778888888888887775 44677788888888888887766 66677  788888888888 77776662 2332


Q ss_pred             --CccceeeccCCcCCcc--ccccc-CCCCccEEEeeCC
Q 036960           82 --SYPEKVDTFMLESLSK--LFRII-TTRKLTYFIFTKC  115 (176)
Q Consensus        82 --~L~~~L~l~~~~~L~~--l~~~~-~~~~l~~l~~~~c  115 (176)
                        +| ++|+++++. +..  +|... ...+++.++++++
T Consensus       127 l~~L-~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A          127 LITL-KKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             CTTC-CEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             CCCC-CEEeCCCCc-ccceechHhHhhcCCCCEEEccCC
Confidence              67 777777653 332  33322 3456677776665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.08  E-value=2.6e-10  Score=96.89  Aligned_cols=66  Identities=27%  Similarity=0.378  Sum_probs=34.5

Q ss_pred             ccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCC
Q 036960            5 QDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQ   73 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~   73 (176)
                      ..|.++++|++|++++|.+++++ ..++.+++|++|++++|+++.+|.. ++  ++++|++|++++ |.++
T Consensus        44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~l~  111 (549)
T 2z81_A           44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG--PLSSLKYLNLMG-NPYQ  111 (549)
T ss_dssp             STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT--TCTTCCEEECTT-CCCS
T ss_pred             hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc--cCCCCcEEECCC-Cccc
Confidence            34455555555555555555533 3455555555555555555544433 45  555555555555 5554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.08  E-value=3.2e-10  Score=83.53  Aligned_cols=85  Identities=24%  Similarity=0.389  Sum_probs=73.0

Q ss_pred             ccCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      ++|..+.  ++|++|++++|+|+++ |..++.+++|++|++++|+|+.+|.. |.  ++++|+.|++++ |.++.+|...
T Consensus        26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~--~l~~L~~L~L~~-N~l~~l~~~~  100 (174)
T 2r9u_A           26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD--KLTQLTQLDLND-NHLKSIPRGA  100 (174)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTT
T ss_pred             ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC--CcchhhEEECCC-CccceeCHHH
Confidence            4677664  8999999999999997 55899999999999999999999876 68  899999999999 9999999763


Q ss_pred             hc---CccceeeccCC
Q 036960           80 LP---SYPEKVDTFML   92 (176)
Q Consensus        80 ~~---~L~~~L~l~~~   92 (176)
                      ..   +| ++|+++++
T Consensus       101 ~~~l~~L-~~L~L~~N  115 (174)
T 2r9u_A          101 FDNLKSL-THIYLYNN  115 (174)
T ss_dssp             TTTCTTC-SEEECCSS
T ss_pred             hccccCC-CEEEeCCC
Confidence            32   67 77777665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.08  E-value=3.7e-10  Score=95.48  Aligned_cols=108  Identities=17%  Similarity=0.266  Sum_probs=59.8

Q ss_pred             cCccccCCCCCcEEeccCCCCcc---ccccccCCCCCcEEEeeCCCCcc-cCcc-cccccCCccceeeccccCCC-CCCc
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQR---LPASIGSLSSLKRMNLVENKLDN-LPIT-ISIKQISPLRTLELRNCNTL-QSLP   76 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~l~~n~l~~-lP~~-~~~~~l~~L~~L~l~~cn~l-~~lP   76 (176)
                      +|..++.+++|++|++++|++++   +|..++.+++|++|++++|.++. +|.. +.  .+++|+.|++++ |.+ +.+|
T Consensus       340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~--~l~~L~~L~Ls~-N~l~~~~~  416 (520)
T 2z7x_B          340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS--WTKSLLSLNMSS-NILTDTIF  416 (520)
T ss_dssp             TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC--CCTTCCEEECCS-SCCCGGGG
T ss_pred             hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc--cCccCCEEECcC-CCCCcchh
Confidence            45666667777777777777664   34456677777777777777765 6654 44  555555555555 444 3333


Q ss_pred             hhhhcCccceeeccCCcCCccccccc-CCCCccEEEeeCC
Q 036960           77 KLLLPSYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKC  115 (176)
Q Consensus        77 ~~l~~~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c  115 (176)
                      ..++.+| +.|+++++ .++.+|... ....++.++++++
T Consensus       417 ~~l~~~L-~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          417 RCLPPRI-KVLDLHSN-KIKSIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             GSCCTTC-CEEECCSS-CCCCCCGGGGGCTTCCEEECCSS
T ss_pred             hhhcccC-CEEECCCC-cccccchhhhcCCCCCEEECCCC
Confidence            3333445 55555544 344443322 3334445544443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.07  E-value=6.4e-10  Score=98.85  Aligned_cols=64  Identities=33%  Similarity=0.445  Sum_probs=30.3

Q ss_pred             cCccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccc
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRN   68 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~   68 (176)
                      +|..++.+++|++|++++|.+++ +|..++.+++|++|++++|.++ .+|..+.  .+++|+.|++++
T Consensus       410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~  475 (768)
T 3rgz_A          410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDF  475 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCS
T ss_pred             cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCceEEEecC
Confidence            34444455555555555554443 4444444444444444444444 3444444  444444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.07  E-value=4.5e-10  Score=91.43  Aligned_cols=90  Identities=22%  Similarity=0.284  Sum_probs=78.5

Q ss_pred             ccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhh--
Q 036960            5 QDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLL--   80 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~--   80 (176)
                      ..|..+++|++|+|++|+|+.+|. .|..+++|++|++++|+|+.+ |..|.  ++++|+.|++++ |.++.+|..+.  
T Consensus        82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~-N~l~~l~~~~~~~  158 (361)
T 2xot_A           82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE--DMAQLQKLYLSQ-NQISRFPVELIKD  158 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCS-SCCCSCCGGGTC-
T ss_pred             hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC--CcccCCEEECCC-CcCCeeCHHHhcC
Confidence            458899999999999999999776 689999999999999999977 55689  999999999999 99999998763  


Q ss_pred             ----cCccceeeccCCcCCcccc
Q 036960           81 ----PSYPEKVDTFMLESLSKLF   99 (176)
Q Consensus        81 ----~~L~~~L~l~~~~~L~~l~   99 (176)
                          .+| ++|+++++ .++.++
T Consensus       159 ~~~l~~L-~~L~L~~N-~l~~l~  179 (361)
T 2xot_A          159 GNKLPKL-MLLDLSSN-KLKKLP  179 (361)
T ss_dssp             ---CTTC-CEEECCSS-CCCCCC
T ss_pred             cccCCcC-CEEECCCC-CCCccC
Confidence                378 89999875 566664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.07  E-value=7.4e-10  Score=93.09  Aligned_cols=102  Identities=25%  Similarity=0.283  Sum_probs=70.3

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcC
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPS   82 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~   82 (176)
                      +| +++.+++|++|++++|+++++|..+   .+|++|++++|+++.+| .++  ++++|+.|++++ |.++.+|. ...+
T Consensus       146 lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~--~l~~L~~L~l~~-N~l~~l~~-~~~~  216 (454)
T 1jl5_A          146 LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQ--NLPFLTAIYADN-NSLKKLPD-LPLS  216 (454)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCT--TCTTCCEEECCS-SCCSSCCC-CCTT
T ss_pred             Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-ccc--CCCCCCEEECCC-CcCCcCCC-CcCc
Confidence            45 4677777777777777777766543   36777777777777776 577  888888888888 88887774 3357


Q ss_pred             ccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           83 YPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        83 L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                      | ++|+++++ .+..+|+......++.++++++
T Consensus       217 L-~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          217 L-ESIVAGNN-ILEELPELQNLPFLTTIYADNN  247 (454)
T ss_dssp             C-CEEECCSS-CCSSCCCCTTCTTCCEEECCSS
T ss_pred             c-cEEECcCC-cCCcccccCCCCCCCEEECCCC
Confidence            7 88888766 4556654444556666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.07  E-value=6.9e-10  Score=86.66  Aligned_cols=106  Identities=19%  Similarity=0.203  Sum_probs=64.4

Q ss_pred             cccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccC-cccccccCCccceeeccccCCCCCCchh-hh--
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLP-ITISIKQISPLRTLELRNCNTLQSLPKL-LL--   80 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP-~~~~~~~l~~L~~L~l~~cn~l~~lP~~-l~--   80 (176)
                      .+.++++|++|++++|.++.++. .+..+++|++|++++|.++.++ ..+.  ++++|+.|++++ |.+..++.. +.  
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~~~~~~~l  123 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVE-TNLASLENFPIGHL  123 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTT-SCCCCSTTCCCTTC
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc--CCccccEEECCC-CCccccCchhcccC
Confidence            45666677777777777666544 5666777777777777766554 3466  677777777777 666665542 22  


Q ss_pred             cCccceeeccCCcCCcc--ccccc-CCCCccEEEeeCCc
Q 036960           81 PSYPEKVDTFMLESLSK--LFRII-TTRKLTYFIFTKCL  116 (176)
Q Consensus        81 ~~L~~~L~l~~~~~L~~--l~~~~-~~~~l~~l~~~~c~  116 (176)
                      .+| ++|+++++ .+..  ++... ...+++.++++++.
T Consensus       124 ~~L-~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          124 KTL-KELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             TTC-CEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCC-CEEECcCC-ccceecCchhhccCCCCCEEECCCCC
Confidence            256 67777654 3433  22222 34567777776653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.07  E-value=3e-10  Score=99.05  Aligned_cols=105  Identities=20%  Similarity=0.275  Sum_probs=87.1

Q ss_pred             CCCCcEEeccCCCCcccccccc--CCCCCcEEEeeCCCCcccCcccccccCCccceeeccc-----cCC-CCCCchhhhc
Q 036960           10 LSLLKELNLCVNDFQRLPASIG--SLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN-----CNT-LQSLPKLLLP   81 (176)
Q Consensus        10 l~~L~~L~L~~n~l~~lp~~~~--~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~-----cn~-l~~lP~~l~~   81 (176)
                      +++|++|++++|.++.+|..+.  .+++|++|++++|+++.+|..+.  .+++|+.|++++     .|. .+.+|..+..
T Consensus       487 l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~  564 (636)
T 4eco_A          487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL--NSSTLKGFGIRNQRDAQGNRTLREWPEGITL  564 (636)
T ss_dssp             GGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG--GCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred             cCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhh--cCCCCCEEECCCCcccccCcccccChHHHhc
Confidence            3489999999999999999887  99999999999999999999999  999999999954     044 4688877764


Q ss_pred             --CccceeeccCCcCCcccccccCCCCccEEEeeCCcCcc
Q 036960           82 --SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLN  119 (176)
Q Consensus        82 --~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~~l~  119 (176)
                        +| ++|+++++ .+..+|.... ..++.++++++.-..
T Consensus       565 l~~L-~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          565 CPSL-TQLQIGSN-DIRKVNEKIT-PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CSSC-CEEECCSS-CCCBCCSCCC-TTCCEEECCSCTTCE
T ss_pred             CCCC-CEEECCCC-cCCccCHhHh-CcCCEEECcCCCCcc
Confidence              78 99999887 4688866544 688999998886543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.06  E-value=6e-10  Score=95.37  Aligned_cols=105  Identities=23%  Similarity=0.281  Sum_probs=70.8

Q ss_pred             cCccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhh
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      +|..+.  ++|++|++++|.++++| ..++.+++|++|++++|+|+.+ |..|.  ++++|++|++++ |.++.+|..-.
T Consensus        46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~lp~~~l  120 (562)
T 3a79_B           46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL--FNQDLEYLDVSH-NRLQNISCCPM  120 (562)
T ss_dssp             CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT--TCTTCCEEECTT-SCCCEECSCCC
T ss_pred             CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC--CCCCCCEEECCC-CcCCccCcccc
Confidence            555543  67788888888887765 4778888888888888888766 45577  788888888888 77877776523


Q ss_pred             cCccceeeccCCcCCcccc--c-ccCCCCccEEEeeC
Q 036960           81 PSYPEKVDTFMLESLSKLF--R-IITTRKLTYFIFTK  114 (176)
Q Consensus        81 ~~L~~~L~l~~~~~L~~l~--~-~~~~~~l~~l~~~~  114 (176)
                      .+| ++|+++++ .+..++  . .....+++.+++++
T Consensus       121 ~~L-~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~  155 (562)
T 3a79_B          121 ASL-RHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSA  155 (562)
T ss_dssp             TTC-SEEECCSS-CCSBCCCCGGGGGCTTCCEEEEEC
T ss_pred             ccC-CEEECCCC-CccccCchHhhcccCcccEEecCC
Confidence            367 77777665 344432  1 22345566666655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.06  E-value=4.3e-10  Score=95.09  Aligned_cols=107  Identities=18%  Similarity=0.212  Sum_probs=72.9

Q ss_pred             ccCccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      ++|..+.  ++|++|++++|.+++++ ..+..+++|++|++++|+++.+ |..|.  ++++|++|++++ |.++.+|..-
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~lp~~~   88 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFK--FNQELEYLDLSH-NKLVKISCHP   88 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGT--TCTTCCEEECCS-SCCCEEECCC
T ss_pred             ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhh--cccCCCEEecCC-CceeecCccc
Confidence            3566654  67888888888887765 4778888888888888888766 56677  788888888888 7887777652


Q ss_pred             hcCccceeeccCCcCCcc--ccc-ccCCCCccEEEeeCC
Q 036960           80 LPSYPEKVDTFMLESLSK--LFR-IITTRKLTYFIFTKC  115 (176)
Q Consensus        80 ~~~L~~~L~l~~~~~L~~--l~~-~~~~~~l~~l~~~~c  115 (176)
                      ..+| ++|+++++. +..  +|+ .....+++.++++++
T Consensus        89 l~~L-~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B           89 TVNL-KHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             CCCC-SEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEES
T ss_pred             cCCc-cEEeccCCc-cccccchhhhccCCcceEEEecCc
Confidence            2367 777777653 433  222 223456666666553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.06  E-value=1.6e-10  Score=104.45  Aligned_cols=107  Identities=19%  Similarity=0.228  Sum_probs=60.2

Q ss_pred             cCcccc--CCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCC-Ccc--cCcccccccCC-------ccceeecccc
Q 036960            3 ILQDIG--CLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENK-LDN--LPITISIKQIS-------PLRTLELRNC   69 (176)
Q Consensus         3 lP~~l~--~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~-l~~--lP~~~~~~~l~-------~L~~L~l~~c   69 (176)
                      +|+.++  ++++|++|++++|.+.+ +|..++.+++|++|++++|+ ++.  +|..++  .++       +|+.|++++ 
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~--~L~~~~~~l~~L~~L~Ls~-  557 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT--RLADDEDTGPKIQIFYMGY-  557 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH--HHHHCTTTTTTCCEEECCS-
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH--hhhhcccccCCccEEEeeC-
Confidence            666665  67777777777776544 66666666666666666665 553  565554  444       666666666 


Q ss_pred             CCCCCCch--hhhc--CccceeeccCCcCCcccccccCCCCccEEEeeC
Q 036960           70 NTLQSLPK--LLLP--SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTK  114 (176)
Q Consensus        70 n~l~~lP~--~l~~--~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~  114 (176)
                      |.++.+|.  .+..  +| +.|+++++ .+..+|......+++.+++++
T Consensus       558 N~L~~ip~~~~l~~L~~L-~~L~Ls~N-~l~~lp~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          558 NNLEEFPASASLQKMVKL-GLLDCVHN-KVRHLEAFGTNVKLTDLKLDY  604 (876)
T ss_dssp             SCCCBCCCHHHHTTCTTC-CEEECTTS-CCCBCCCCCTTSEESEEECCS
T ss_pred             CcCCccCChhhhhcCCCC-CEEECCCC-CcccchhhcCCCcceEEECcC
Confidence            66666665  3433  55 55665544 233443222233344444433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.06  E-value=7.7e-10  Score=95.09  Aligned_cols=107  Identities=19%  Similarity=0.118  Sum_probs=70.9

Q ss_pred             CccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCc-hhhh
Q 036960            4 LQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLP-KLLL   80 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP-~~l~   80 (176)
                      |..|+++++|++|++++|.++.+ |..|+.+++|++|++++|+++.+ |..++  ++++|++|++++ |.++.++ ..+.
T Consensus        50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~-n~i~~l~~~~~~  126 (606)
T 3t6q_A           50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS--GPKALKHLFFIQ-TGISSIDFIPLH  126 (606)
T ss_dssp             TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS--SCTTCCEEECTT-SCCSCGGGSCCT
T ss_pred             hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc--ccccccEeeccc-cCcccCCcchhc
Confidence            45677778888888888877774 55777888888888888887755 55677  778888888887 7777663 2222


Q ss_pred             c--CccceeeccCCcCCccc--ccccCCCCccEEEeeCC
Q 036960           81 P--SYPEKVDTFMLESLSKL--FRIITTRKLTYFIFTKC  115 (176)
Q Consensus        81 ~--~L~~~L~l~~~~~L~~l--~~~~~~~~l~~l~~~~c  115 (176)
                      .  +| ++|+++++ .+..+  +......+++.++++++
T Consensus       127 ~l~~L-~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n  163 (606)
T 3t6q_A          127 NQKTL-ESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNN  163 (606)
T ss_dssp             TCTTC-CEEECCSS-CCCCCCCCTTCCCTTCCEEECCSS
T ss_pred             cCCcc-cEEECCCC-cccccCcccccCCcccCEEEcccC
Confidence            2  66 77777665 34333  33333455666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.05  E-value=1.2e-09  Score=85.37  Aligned_cols=83  Identities=31%  Similarity=0.400  Sum_probs=48.4

Q ss_pred             cccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCC--Cchhhhc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQS--LPKLLLP   81 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~--lP~~l~~   81 (176)
                      .+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++. .+.  .+++|+.|++++ |.++.  +|..+..
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~l~~~~~~  147 (276)
T 2z62_A           71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAH-NLIQSFKLPEYFSN  147 (276)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCT--TCTTCCEEECCS-SCCCCCCCCGGGGG
T ss_pred             HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcc--cCCCCCEEECcC-CccceecCchhhcc
Confidence            4566666666666666666644 356666666666666666665544 355  566666666666 66554  4444432


Q ss_pred             --CccceeeccCC
Q 036960           82 --SYPEKVDTFML   92 (176)
Q Consensus        82 --~L~~~L~l~~~   92 (176)
                        +| ++|+++++
T Consensus       148 l~~L-~~L~Ls~N  159 (276)
T 2z62_A          148 LTNL-EHLDLSSN  159 (276)
T ss_dssp             CTTC-CEEECCSS
T ss_pred             CCCC-CEEECCCC
Confidence              55 55555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.04  E-value=7.3e-10  Score=95.25  Aligned_cols=110  Identities=18%  Similarity=0.221  Sum_probs=62.9

Q ss_pred             cCccccCCCCCcEEeccCCCCcc--ccccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCC-chh
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQR--LPASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSL-PKL   78 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~l-P~~   78 (176)
                      +|..++.+++|++|++++|.+++  +|..++.+++|++|++++|+++.+ |..+.  ++++|+.|++++ |.+..+ |..
T Consensus       440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~  516 (606)
T 3vq2_A          440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD--TLHRLQLLNMSH-NNLLFLDSSH  516 (606)
T ss_dssp             CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCS-SCCSCEEGGG
T ss_pred             chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc--ccccCCEEECCC-CcCCCcCHHH
Confidence            34455566666666666666654  455666666666666666666644 34466  666666666666 666554 333


Q ss_pred             hhc--CccceeeccCCcCCcccccccCC--CCccEEEeeCCcC
Q 036960           79 LLP--SYPEKVDTFMLESLSKLFRIITT--RKLTYFIFTKCLK  117 (176)
Q Consensus        79 l~~--~L~~~L~l~~~~~L~~l~~~~~~--~~l~~l~~~~c~~  117 (176)
                      +..  +| ++|+++++ .++.+|.....  ..++.++++++.-
T Consensus       517 ~~~l~~L-~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          517 YNQLYSL-STLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             TTTCTTC-CEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             ccCCCcC-CEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence            332  56 66666655 35555443322  2366666665443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.04  E-value=9.5e-10  Score=92.10  Aligned_cols=68  Identities=25%  Similarity=0.461  Sum_probs=38.2

Q ss_pred             ccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCC
Q 036960            5 QDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSL   75 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~l   75 (176)
                      ..|.++++|++|++++|.++.+ |..++.+++|++|++++|+++.+|.. +.  ++++|+.|++++ |.+..+
T Consensus        50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~i~~~  119 (477)
T 2id5_A           50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT--GLSNLTKLDISE-NKIVIL  119 (477)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST--TCTTCCEEECTT-SCCCEE
T ss_pred             hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccccc--CCCCCCEEECCC-CccccC
Confidence            3455555666666666655553 44555566666666666665555543 45  555566666655 555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.02  E-value=1.4e-09  Score=94.68  Aligned_cols=101  Identities=20%  Similarity=0.271  Sum_probs=57.8

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY   83 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L   83 (176)
                      .+..+++|+.|+|++|.|+.+|. +..+++|+.|+|++|.|+.+| .+.  .+++|+.|++++ |.+..+| .+..  +|
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~--~l~~L~~L~Ls~-N~l~~l~-~l~~l~~L  133 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLK--DLKKLKSLSLEH-NGISDIN-GLVHLPQL  133 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TST--TCTTCCEEECTT-SCCCCCG-GGGGCTTC
T ss_pred             HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhc--cCCCCCEEEecC-CCCCCCc-cccCCCcc
Confidence            45666777777777777777654 666666777777776666655 455  666666666666 6666655 2322  45


Q ss_pred             cceeeccCCcCCcccccccCCCCccEEEeeC
Q 036960           84 PEKVDTFMLESLSKLFRIITTRKLTYFIFTK  114 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~  114 (176)
                       +.|+++++ .+..++.......|+.|++++
T Consensus       134 -~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~  162 (605)
T 1m9s_A          134 -ESLYLGNN-KITDITVLSRLTKLDTLSLED  162 (605)
T ss_dssp             -SEEECCSS-CCCCCGGGGSCTTCSEEECCS
T ss_pred             -CEEECCCC-ccCCchhhcccCCCCEEECcC
Confidence             55555543 233332222333444444433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.02  E-value=3.1e-10  Score=90.47  Aligned_cols=103  Identities=14%  Similarity=0.147  Sum_probs=63.3

Q ss_pred             CCCCCcEEeccCCCCcc-ccccc--cCCCCCcEEEeeCCCCcccCcccccccC-----CccceeeccccCCCCCCch-hh
Q 036960            9 CLSLLKELNLCVNDFQR-LPASI--GSLSSLKRMNLVENKLDNLPITISIKQI-----SPLRTLELRNCNTLQSLPK-LL   79 (176)
Q Consensus         9 ~l~~L~~L~L~~n~l~~-lp~~~--~~l~~L~~L~l~~n~l~~lP~~~~~~~l-----~~L~~L~l~~cn~l~~lP~-~l   79 (176)
                      ++++|++|++++|.+++ +|..+  +.+++|++|++++|+++.+|..+.  .+     ++|++|++++ |.++.+|. .+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~l~~~~~~~L~~L~L~~-N~l~~~~~~~~  169 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA--ELQQWLKPGLKVLSIAQ-AHSLNFSCEQV  169 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHH--HHHTTCCTTCCEEEEES-CSCCCCCTTTC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHH--HHHHhhcCCCcEEEeeC-CCCccchHHHh
Confidence            56777777777777764 66655  677777777777777776666666  55     6777777777 77766663 33


Q ss_pred             hc--CccceeeccCCcCCccc--c-cc--cCCCCccEEEeeCC
Q 036960           80 LP--SYPEKVDTFMLESLSKL--F-RI--ITTRKLTYFIFTKC  115 (176)
Q Consensus        80 ~~--~L~~~L~l~~~~~L~~l--~-~~--~~~~~l~~l~~~~c  115 (176)
                      ..  +| ++|+++++.-...+  + ..  ....+++.++++++
T Consensus       170 ~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N  211 (312)
T 1wwl_A          170 RVFPAL-STLDLSDNPELGERGLISALCPLKFPTLQVLALRNA  211 (312)
T ss_dssp             CCCSSC-CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred             ccCCCC-CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence            22  56 67777665422211  1 11  23445666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.02  E-value=4.2e-10  Score=92.03  Aligned_cols=86  Identities=17%  Similarity=0.165  Sum_probs=77.2

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcC
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPS   82 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~   82 (176)
                      .|..+..+++|++|++++|.++.+|..+..+++|++|++++|+++.+|..+.  .+++|+.|++++ |.++.+|.....+
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~l~~L~~L~L~~-N~i~~~~~~~~~~  340 (390)
T 3o6n_A          264 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--QFDRLENLYLDH-NSIVTLKLSTHHT  340 (390)
T ss_dssp             ESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH--HHTTCSEEECCS-SCCCCCCCCTTCC
T ss_pred             ChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCcccc--ccCcCCEEECCC-CccceeCchhhcc
Confidence            4778899999999999999999999888999999999999999999999898  999999999999 9999988555557


Q ss_pred             ccceeeccCC
Q 036960           83 YPEKVDTFML   92 (176)
Q Consensus        83 L~~~L~l~~~   92 (176)
                      | +.|+++++
T Consensus       341 L-~~L~l~~N  349 (390)
T 3o6n_A          341 L-KNLTLSHN  349 (390)
T ss_dssp             C-SEEECCSS
T ss_pred             C-CEEEcCCC
Confidence            7 78887765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.02  E-value=6.7e-10  Score=89.96  Aligned_cols=103  Identities=24%  Similarity=0.185  Sum_probs=87.5

Q ss_pred             ccCC-CCCcEEeccCCCCccccccccCCCCCcEEEeeC-CCCcccCcc-cccccCCccceeeccccCCCCCCchhhhcCc
Q 036960            7 IGCL-SLLKELNLCVNDFQRLPASIGSLSSLKRMNLVE-NKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLPSY   83 (176)
Q Consensus         7 l~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~-n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L   83 (176)
                      +..+ ..++.|++++|+|+.+|..+....+|+++++++ |.++.+|.. |.  ++++|+.|++++ |+++.+|.....+|
T Consensus       149 f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~--~l~~L~~LdLs~-N~l~~lp~~~~~~L  225 (350)
T 4ay9_X          149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH--GASGPVILDISR-TRIHSLPSYGLENL  225 (350)
T ss_dssp             STTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTT--TEECCSEEECTT-SCCCCCCSSSCTTC
T ss_pred             hhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhc--cCcccchhhcCC-CCcCccChhhhccc
Confidence            4444 468889999999999998887888999999975 779999875 78  999999999999 99999998877889


Q ss_pred             cceeeccCCcCCcccccccCCCCccEEEee
Q 036960           84 PEKVDTFMLESLSKLFRIITTRKLTYFIFT  113 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~  113 (176)
                       +.|.+.++..++.+|......+++.+.+.
T Consensus       226 -~~L~~l~~~~l~~lP~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          226 -KKLRARSTYNLKKLPTLEKLVALMEASLT  254 (350)
T ss_dssp             -CEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred             -hHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence             99999899999999876667777777653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.02  E-value=1.1e-09  Score=87.75  Aligned_cols=107  Identities=23%  Similarity=0.205  Sum_probs=74.8

Q ss_pred             cCccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhh
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      +|..+.  ++|++|++++|.++.++ ..+..+++|++|++++|+++.++. .+.  .+++|+.|++++ |.++.+|..+.
T Consensus       187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~lp~~l~  261 (332)
T 2ft3_A          187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS--FLPTLRELHLDN-NKLSRVPAGLP  261 (332)
T ss_dssp             CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG--GCTTCCEEECCS-SCCCBCCTTGG
T ss_pred             cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh--CCCCCCEEECCC-CcCeecChhhh
Confidence            444443  57888888888888855 578888888888888888887654 577  788888888888 88888887665


Q ss_pred             c--CccceeeccCCcCCcccccccC--------CCCccEEEeeCCc
Q 036960           81 P--SYPEKVDTFMLESLSKLFRIIT--------TRKLTYFIFTKCL  116 (176)
Q Consensus        81 ~--~L~~~L~l~~~~~L~~l~~~~~--------~~~l~~l~~~~c~  116 (176)
                      .  +| ++|+++++ .+..++....        ...++.+.+.++.
T Consensus       262 ~l~~L-~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          262 DLKLL-QVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             GCTTC-CEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             cCccC-CEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence            4  67 88888765 4555532221        2345667776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.02  E-value=1.6e-09  Score=94.38  Aligned_cols=108  Identities=20%  Similarity=0.237  Sum_probs=79.3

Q ss_pred             cCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc---------ccccccCCccceeeccccCCC
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI---------TISIKQISPLRTLELRNCNTL   72 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~---------~~~~~~l~~L~~L~l~~cn~l   72 (176)
                      +|..++.+++|++|++++|+++.+|. .+..+++|++|++++|+++.++.         .+.  ++++|+.|++++ |.+
T Consensus       472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~--~l~~L~~L~L~~-N~l  548 (680)
T 1ziw_A          472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK--GLSHLHILNLES-NGF  548 (680)
T ss_dssp             SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTT--TCTTCCEEECCS-SCC
T ss_pred             CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhc--CCCCCCEEECCC-CCC
Confidence            56778888888888888888888765 57888888888888888876532         256  788888888888 888


Q ss_pred             CCCchhhhc---CccceeeccCCcCCccccccc--CCCCccEEEeeCC
Q 036960           73 QSLPKLLLP---SYPEKVDTFMLESLSKLFRII--TTRKLTYFIFTKC  115 (176)
Q Consensus        73 ~~lP~~l~~---~L~~~L~l~~~~~L~~l~~~~--~~~~l~~l~~~~c  115 (176)
                      +.+|.....   +| +.|+++++ .++.++...  ....++.++++++
T Consensus       549 ~~i~~~~~~~l~~L-~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          549 DEIPVEVFKDLFEL-KIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             CCCCTTTTTTCTTC-CEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCCCHHHcccccCc-ceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence            888865432   67 78888654 566665433  3456777777765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.01  E-value=2.8e-09  Score=85.26  Aligned_cols=105  Identities=13%  Similarity=0.194  Sum_probs=75.0

Q ss_pred             CccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCch-hhhc
Q 036960            4 LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPK-LLLP   81 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~-~l~~   81 (176)
                      |..+.++++|++|++++|.++.+|..+.  ++|++|++++|+++.+ |..+.  .+++|+.|++++ |.++.++. .+..
T Consensus       164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~l~~~~~~~~~~  238 (330)
T 1xku_A          164 NGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSF-NSISAVDNGSLAN  238 (330)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGT--TCTTCCEEECCS-SCCCEECTTTGGG
T ss_pred             hhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCC-CcCceeChhhccC
Confidence            5567788888888888888888876554  6788888888888865 55677  788888888888 77776664 2332


Q ss_pred             --CccceeeccCCcCCccccccc-CCCCccEEEeeCC
Q 036960           82 --SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKC  115 (176)
Q Consensus        82 --~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c  115 (176)
                        +| ++|+++++ .+..+|... ....++.++++++
T Consensus       239 l~~L-~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          239 TPHL-RELHLNNN-KLVKVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             STTC-CEEECCSS-CCSSCCTTTTTCSSCCEEECCSS
T ss_pred             CCCC-CEEECCCC-cCccCChhhccCCCcCEEECCCC
Confidence              67 78888776 566665433 3456777777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.01  E-value=1e-09  Score=91.15  Aligned_cols=85  Identities=24%  Similarity=0.275  Sum_probs=73.7

Q ss_pred             CccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhhc
Q 036960            4 LQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      |..|.++++|++|++++|.++++ |..++.+++|++|++++|+++.+ |..+.  .+++|+.|++++ |.++.+|.....
T Consensus       316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~  392 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL--GLPNLKELALDT-NQLKSVPDGIFD  392 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCS-SCCSCCCTTTTT
T ss_pred             hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc--ccccccEEECCC-CccccCCHhHhc
Confidence            56788999999999999999996 56889999999999999999976 67799  999999999999 999999976543


Q ss_pred             ---CccceeeccCC
Q 036960           82 ---SYPEKVDTFML   92 (176)
Q Consensus        82 ---~L~~~L~l~~~   92 (176)
                         +| ++|+++++
T Consensus       393 ~l~~L-~~L~l~~N  405 (455)
T 3v47_A          393 RLTSL-QKIWLHTN  405 (455)
T ss_dssp             TCTTC-CEEECCSS
T ss_pred             cCCcc-cEEEccCC
Confidence               56 67777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.00  E-value=1.8e-09  Score=93.97  Aligned_cols=101  Identities=22%  Similarity=0.289  Sum_probs=55.2

Q ss_pred             ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Ccc
Q 036960            7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SYP   84 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L~   84 (176)
                      +..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|+|..+| .+.  .+++|+.|++++ |.+..++ .+..  +| 
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~--~l~~L~~L~Ls~-N~l~~l~-~l~~l~~L-  155 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLV--HLPQLESLYLGN-NKITDIT-VLSRLTKL-  155 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGG--GCTTCSEEECCS-SCCCCCG-GGGSCTTC-
T ss_pred             hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-ccc--CCCccCEEECCC-CccCCch-hhcccCCC-
Confidence            556666666666666666655 5666666666666666666553 355  566666666666 5565553 3322  45 


Q ss_pred             ceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           85 EKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        85 ~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                      +.|+++++ .+..++.......|+.|++++|
T Consensus       156 ~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          156 DTLSLEDN-QISDIVPLAGLTKLQNLYLSKN  185 (605)
T ss_dssp             SEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred             CEEECcCC-cCCCchhhccCCCCCEEECcCC
Confidence            55555544 3333333333344455544443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.00  E-value=1.3e-09  Score=86.11  Aligned_cols=105  Identities=17%  Similarity=0.180  Sum_probs=59.8

Q ss_pred             cccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCcc--cCcccccccCCccceeeccccCCCCCCc-hhhhc
Q 036960            6 DIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLDN--LPITISIKQISPLRTLELRNCNTLQSLP-KLLLP   81 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~--lP~~~~~~~l~~L~~L~l~~cn~l~~lP-~~l~~   81 (176)
                      .+..+++|++|++++|.++. .|..+..+++|++|++++|.++.  +|..+.  .+++|+.|++++ |.++.++ ..+..
T Consensus       121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~Ls~-n~l~~~~~~~~~~  197 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQ-CQLEQLSPTAFNS  197 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTT-SCCCEECTTTTTT
T ss_pred             hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh--hCcCCCEEECCC-CCcCCcCHHHhcC
Confidence            45556666666666666655 33345666666666666666653  566666  667777777777 6666553 23322


Q ss_pred             --CccceeeccCCcCCccccc--ccCCCCccEEEeeCC
Q 036960           82 --SYPEKVDTFMLESLSKLFR--IITTRKLTYFIFTKC  115 (176)
Q Consensus        82 --~L~~~L~l~~~~~L~~l~~--~~~~~~l~~l~~~~c  115 (176)
                        +| ++|+++++ .+..++.  ......++.++++++
T Consensus       198 l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          198 LSSL-QVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             CTTC-CEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             CCCC-CEEECCCC-ccCccChhhccCcccCCEeECCCC
Confidence              56 66776654 3444322  112345666666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.00  E-value=1.8e-09  Score=91.79  Aligned_cols=106  Identities=19%  Similarity=0.203  Sum_probs=67.7

Q ss_pred             ccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccC-cccccccCCccceeeccccCCCCCCchh-hhc
Q 036960            5 QDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLP-ITISIKQISPLRTLELRNCNTLQSLPKL-LLP   81 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP-~~~~~~~l~~L~~L~l~~cn~l~~lP~~-l~~   81 (176)
                      ..|.++++|++|++++|.+++++ ..|+.+++|++|++++|.++.+| ..|.  ++++|++|++++ |.++.+|.. +..
T Consensus        46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~-n~l~~l~~~~~~~  122 (570)
T 2z63_A           46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVE-TNLASLENFPIGH  122 (570)
T ss_dssp             TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTT-SCCCCSTTCSCTT
T ss_pred             hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc--Cccccccccccc-cccccCCCccccc
Confidence            35667777777777777777754 35777777777777777777664 4567  777777777777 777766642 222


Q ss_pred             --CccceeeccCCcCCcc--ccccc-CCCCccEEEeeCC
Q 036960           82 --SYPEKVDTFMLESLSK--LFRII-TTRKLTYFIFTKC  115 (176)
Q Consensus        82 --~L~~~L~l~~~~~L~~--l~~~~-~~~~l~~l~~~~c  115 (176)
                        +| ++|+++++. +..  +|... ...+++.++++++
T Consensus       123 l~~L-~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A          123 LKTL-KELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             CTTC-CEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTS
T ss_pred             cccc-cEEecCCCc-cceecChhhhcccCCCCEEeCcCC
Confidence              66 777776652 332  23222 3456666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.99  E-value=4.2e-10  Score=89.58  Aligned_cols=105  Identities=15%  Similarity=0.103  Sum_probs=80.7

Q ss_pred             ccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcc---cCc--ccccccCCccceeeccccCCCCCCchh--
Q 036960            7 IGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDN---LPI--TISIKQISPLRTLELRNCNTLQSLPKL--   78 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~---lP~--~~~~~~l~~L~~L~l~~cn~l~~lP~~--   78 (176)
                      +..+++|++|++++|.++.+| ..++.+++|++|++++|++..   ++.  .+.  .+++|++|++++ |.++.+|..  
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~--~l~~L~~L~Ls~-N~l~~l~~~~~  217 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH--KFPAIQNLALRN-TGMETPTGVCA  217 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT--SSCCCCSCBCCS-SCCCCHHHHHH
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh--cCCCCCEEECCC-CCCCchHHHHH
Confidence            456899999999999999865 588999999999999999763   432  346  899999999999 999887753  


Q ss_pred             -hh---cCccceeeccCCcCCccc-ccccCC----CCccEEEeeCCc
Q 036960           79 -LL---PSYPEKVDTFMLESLSKL-FRIITT----RKLTYFIFTKCL  116 (176)
Q Consensus        79 -l~---~~L~~~L~l~~~~~L~~l-~~~~~~----~~l~~l~~~~c~  116 (176)
                       +.   .+| ++|+++++ .+..+ |.....    ..++.++++++.
T Consensus       218 ~l~~~l~~L-~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          218 ALAAAGVQP-HSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAG  262 (310)
T ss_dssp             HHHHHTCCC-SSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred             HHHhcCCCC-CEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCC
Confidence             21   388 99999876 45554 333322    478888887653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.98  E-value=3.1e-09  Score=89.38  Aligned_cols=78  Identities=23%  Similarity=0.241  Sum_probs=42.4

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPE   85 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~   85 (176)
                      .++.+++|++|++++|.++++|  ++.+++|++|++++|+++.+|  ++  ++++|++|++++ |.++.+|-.-..+| +
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~--~l~~L~~L~L~~-N~l~~l~~~~l~~L-~  130 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT--PLTKLTYLNCDT-NKLTKLDVSQNPLL-T  130 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT--TCTTCCEEECCS-SCCSCCCCTTCTTC-C
T ss_pred             hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC--CCCcCCEEECCC-CcCCeecCCCCCcC-C
Confidence            3555556666666666655554  555556666666666555553  55  556666666666 55555542111245 5


Q ss_pred             eeeccC
Q 036960           86 KVDTFM   91 (176)
Q Consensus        86 ~L~l~~   91 (176)
                      +|++++
T Consensus       131 ~L~l~~  136 (457)
T 3bz5_A          131 YLNCAR  136 (457)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.98  E-value=2.1e-09  Score=92.02  Aligned_cols=107  Identities=19%  Similarity=0.192  Sum_probs=59.5

Q ss_pred             cCccccCCCCCcEEeccCCCCcccc---ccccCCCCCcEEEeeCCCCcc-cCcc-cccccCCccceeeccccCCC-CCCc
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLP---ASIGSLSSLKRMNLVENKLDN-LPIT-ISIKQISPLRTLELRNCNTL-QSLP   76 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~-lP~~-~~~~~l~~L~~L~l~~cn~l-~~lP   76 (176)
                      +|..++.+++|++|++++|++++++   ..++.+++|++|++++|+++. +|.. +.  .+++|+.|++++ |.+ ..+|
T Consensus       369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~~  445 (562)
T 3a79_B          369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA--WAESILVLNLSS-NMLTGSVF  445 (562)
T ss_dssp             TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC--CCTTCCEEECCS-SCCCGGGG
T ss_pred             hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc--CcccCCEEECCC-CCCCcchh
Confidence            4556666777777777777766543   346667777777777777664 6654 44  555555555555 444 2333


Q ss_pred             hhhhcCccceeeccCCcCCccccccc-CCCCccEEEeeC
Q 036960           77 KLLLPSYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTK  114 (176)
Q Consensus        77 ~~l~~~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~  114 (176)
                      ..++.+| ++|+++++ .++.+|... ....++.+++++
T Consensus       446 ~~l~~~L-~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~  482 (562)
T 3a79_B          446 RCLPPKV-KVLDLHNN-RIMSIPKDVTHLQALQELNVAS  482 (562)
T ss_dssp             SSCCTTC-SEEECCSS-CCCCCCTTTTSSCCCSEEECCS
T ss_pred             hhhcCcC-CEEECCCC-cCcccChhhcCCCCCCEEECCC
Confidence            3333355 66666554 455554322 233455555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.97  E-value=1.1e-09  Score=92.86  Aligned_cols=109  Identities=20%  Similarity=0.168  Sum_probs=78.4

Q ss_pred             CccccCCCCCcEEeccCCCCcc-cccccc-CCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960            4 LQDIGCLSLLKELNLCVNDFQR-LPASIG-SLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~-lp~~~~-~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      |..++.+++|++|++++|.+++ .|..+. .+++|++|++++|.|+.+|. ..  .+++|+.|++++ |.++.+|..+..
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~--~l~~L~~L~Ls~-N~l~~~~~~~~~  212 (487)
T 3oja_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QV--VFAKLKTLDLSS-NKLAFMGPEFQS  212 (487)
T ss_dssp             GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CC--CCTTCCEEECCS-SCCCEECGGGGG
T ss_pred             chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cc--cCCCCCEEECCC-CCCCCCCHhHcC
Confidence            4566777888888888888877 455554 67888888888888887753 44  578888888888 888888776553


Q ss_pred             --CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCc
Q 036960           82 --SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKL  118 (176)
Q Consensus        82 --~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l  118 (176)
                        +| +.|+++++ .+..+|... ....++.++++++.-.
T Consensus       213 l~~L-~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          213 AAGV-TWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             GTTC-SEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCCc-cEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence              77 88888775 566665443 3456778888776544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.97  E-value=7.7e-10  Score=95.63  Aligned_cols=87  Identities=17%  Similarity=0.173  Sum_probs=79.6

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcC
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPS   82 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~   82 (176)
                      +|..++.+++|++|++++|.++++|..++.+++|++|++++|.++.+|..+.  .+++|+.|++++ |.+..+|....++
T Consensus       270 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~  346 (597)
T 3oja_B          270 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--QFDRLENLYLDH-NSIVTLKLSTHHT  346 (597)
T ss_dssp             ESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH--HHTTCSEEECCS-SCCCCCCCCTTCC
T ss_pred             CHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccc--cCCCCCEEECCC-CCCCCcChhhcCC
Confidence            4778999999999999999999999999999999999999999999999999  999999999999 9999888665668


Q ss_pred             ccceeeccCCc
Q 036960           83 YPEKVDTFMLE   93 (176)
Q Consensus        83 L~~~L~l~~~~   93 (176)
                      | +.|++++++
T Consensus       347 L-~~L~l~~N~  356 (597)
T 3oja_B          347 L-KNLTLSHND  356 (597)
T ss_dssp             C-SEEECCSSC
T ss_pred             C-CEEEeeCCC
Confidence            8 999998764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.96  E-value=4.1e-09  Score=88.62  Aligned_cols=83  Identities=24%  Similarity=0.247  Sum_probs=63.9

Q ss_pred             ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccce
Q 036960            7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEK   86 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~~   86 (176)
                      ++.+++|++|++++|.++++|  ++.+++|++|++++|+++.+|  ++  .+++|+.|++++ |.++.+|-.-..+| ++
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~--~l~~L~~L~l~~-N~l~~l~l~~l~~L-~~  152 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VS--QNPLLTYLNCAR-NTLTEIDVSHNTQL-TE  152 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CT--TCTTCCEEECTT-SCCSCCCCTTCTTC-CE
T ss_pred             cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CC--CCCcCCEEECCC-CccceeccccCCcC-CE
Confidence            678888999999999888885  888888999999999888876  77  888888888888 88877763323366 77


Q ss_pred             eeccCCcCCcc
Q 036960           87 VDTFMLESLSK   97 (176)
Q Consensus        87 L~l~~~~~L~~   97 (176)
                      |+++++..+..
T Consensus       153 L~l~~n~~~~~  163 (457)
T 3bz5_A          153 LDCHLNKKITK  163 (457)
T ss_dssp             EECTTCSCCCC
T ss_pred             EECCCCCcccc
Confidence            77666543333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.96  E-value=3.2e-09  Score=88.85  Aligned_cols=85  Identities=26%  Similarity=0.355  Sum_probs=72.8

Q ss_pred             ccCccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      ++|..+.  +++++|++++|.+++++ ..|..+++|++|++++|.++.+ |..|.  ++++|++|++++ |.++.+|...
T Consensus        25 ~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~-n~l~~~~~~~   99 (477)
T 2id5_A           25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGLRS-NRLKLIPLGV   99 (477)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCS-SCCCSCCTTS
T ss_pred             cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEECCC-CcCCccCccc
Confidence            4676553  58999999999999974 5899999999999999999977 67799  999999999999 9999999765


Q ss_pred             h---cCccceeeccCC
Q 036960           80 L---PSYPEKVDTFML   92 (176)
Q Consensus        80 ~---~~L~~~L~l~~~   92 (176)
                      .   .+| ++|+++++
T Consensus       100 ~~~l~~L-~~L~Ls~n  114 (477)
T 2id5_A          100 FTGLSNL-TKLDISEN  114 (477)
T ss_dssp             STTCTTC-CEEECTTS
T ss_pred             ccCCCCC-CEEECCCC
Confidence            3   278 88888765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.95  E-value=1.5e-09  Score=86.63  Aligned_cols=108  Identities=20%  Similarity=0.197  Sum_probs=74.1

Q ss_pred             ccccCCCCCcEEeccCCCCccc-cccc-cCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960            5 QDIGCLSLLKELNLCVNDFQRL-PASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP-   81 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~l-p~~~-~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-   81 (176)
                      ..++.+++|++|++++|.++.+ |..+ ..+++|++|++++|.|+.+|. ..  .+++|+.|++++ |.++.+|..+.. 
T Consensus       138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~--~l~~L~~L~Ls~-N~l~~l~~~~~~l  213 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QV--VFAKLKTLDLSS-NKLAFMGPEFQSA  213 (317)
T ss_dssp             BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CC--CCTTCCEEECCS-SCCCEECGGGGGG
T ss_pred             hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-cc--ccccCCEEECCC-CcCCcchhhhccc
Confidence            3566677777777777777774 3344 367778888888888777743 34  577888888888 888887766543 


Q ss_pred             -CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCc
Q 036960           82 -SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKL  118 (176)
Q Consensus        82 -~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l  118 (176)
                       +| ++|+++++ .+..++... ....++.++++++.-.
T Consensus       214 ~~L-~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          214 AGV-TWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             TTC-SEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             Ccc-cEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence             77 88888776 566665433 3456777877766543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.95  E-value=3e-09  Score=85.35  Aligned_cols=106  Identities=15%  Similarity=0.198  Sum_probs=89.8

Q ss_pred             ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Ccc
Q 036960            7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SYP   84 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L~   84 (176)
                      +..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|. +.  .+++|++|++++ |.++.+| .+..  +| 
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~--~l~~L~~L~L~~-n~i~~~~-~~~~l~~L-  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LS--NLVKLTNLYIGT-NKITDIS-ALQNLTNL-  112 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCS-SCCCCCG-GGTTCTTC-
T ss_pred             chhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hh--cCCcCCEEEccC-CcccCch-HHcCCCcC-
Confidence            346789999999999999997 48999999999999999999987 88  999999999999 9999987 4543  88 


Q ss_pred             ceeeccCCcCCcccccccCCCCccEEEeeCCcCccc
Q 036960           85 EKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNK  120 (176)
Q Consensus        85 ~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~~l~~  120 (176)
                      ++|+++++ .+..++......+++.+++++|..+..
T Consensus       113 ~~L~l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~  147 (347)
T 4fmz_A          113 RELYLNED-NISDISPLANLTKMYSLNLGANHNLSD  147 (347)
T ss_dssp             SEEECTTS-CCCCCGGGTTCTTCCEEECTTCTTCCC
T ss_pred             CEEECcCC-cccCchhhccCCceeEEECCCCCCccc
Confidence            99999876 476776655677889999988865544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.94  E-value=4.1e-09  Score=91.20  Aligned_cols=58  Identities=29%  Similarity=0.517  Sum_probs=30.1

Q ss_pred             CCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCch
Q 036960           11 SLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPK   77 (176)
Q Consensus        11 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~   77 (176)
                      ++|++|++++|.|+.+|   ..+++|++|++++|+|+.+|. +.  +  +|+.|++++ |.++.+|.
T Consensus        80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~--~--~L~~L~Ls~-N~l~~lp~  137 (571)
T 3cvr_A           80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LP--A--SLKHLDVDN-NQLTMLPE  137 (571)
T ss_dssp             TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CC--T--TCCEEECCS-SCCSCCCC
T ss_pred             CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hh--c--CCCEEECCC-CcCCCCCC
Confidence            45555666655555555   334555555555555555554 43  3  444444444 44444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.94  E-value=2.4e-09  Score=93.25  Aligned_cols=67  Identities=30%  Similarity=0.391  Sum_probs=34.6

Q ss_pred             ccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCc
Q 036960            7 IGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      |+++++|++|++++|.++++ |..++.+++|++|++++|.++.+|. .|.  ++++|++|++++ |.++.+|
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~--~l~~L~~L~L~~-n~l~~~~  113 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA--FCTNLTELHLMS-NSIQKIK  113 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCS-SCCCCCC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhc--cCCCCCEEECCC-CccCccC
Confidence            44555555555555555553 3344555555555555555555544 245  555555555555 5554444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.94  E-value=2.9e-09  Score=89.21  Aligned_cols=80  Identities=16%  Similarity=0.320  Sum_probs=62.5

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY   83 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L   83 (176)
                      .+..+++|++|++++|.++++|. ++.+++|++|++++|.++.++. +.  ++++|++|++++ |.++.+|. +..  +|
T Consensus        63 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~L~~-n~l~~~~~-~~~l~~L  136 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LA--NLTNLTGLTLFN-NQITDIDP-LKNLTNL  136 (466)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCS-SCCCCCGG-GTTCTTC
T ss_pred             chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hc--CCCCCCEEECCC-CCCCCChH-HcCCCCC
Confidence            36678888888888888888776 8888888888888888887766 77  888888888888 78887774 432  67


Q ss_pred             cceeeccCC
Q 036960           84 PEKVDTFML   92 (176)
Q Consensus        84 ~~~L~l~~~   92 (176)
                       ++|+++++
T Consensus       137 -~~L~l~~n  144 (466)
T 1o6v_A          137 -NRLELSSN  144 (466)
T ss_dssp             -SEEEEEEE
T ss_pred             -CEEECCCC
Confidence             77777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.94  E-value=2.9e-09  Score=86.21  Aligned_cols=111  Identities=11%  Similarity=0.195  Sum_probs=71.2

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCc-ccCc-ccccccCCccceeeccccCCCCCCchh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLD-NLPI-TISIKQISPLRTLELRNCNTLQSLPKL   78 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~-~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~   78 (176)
                      +||..+  .+++++|+|++|+|+.+|. .|.++++|++|+|++|++. .+|. .|.  ++++++.+...++|+++.+|.+
T Consensus        23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~--~L~~l~~~l~~~~N~l~~l~~~   98 (350)
T 4ay9_X           23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPE   98 (350)
T ss_dssp             SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC--SCTTCCEEEEEEETTCCEECTT
T ss_pred             ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh--cchhhhhhhcccCCcccccCch
Confidence            466655  3578888999998888886 5788888999999888875 5665 366  7777766444433788777655


Q ss_pred             hhc---CccceeeccCCcCCcccccccC--CCCccEEEeeCCcCc
Q 036960           79 LLP---SYPEKVDTFMLESLSKLFRIIT--TRKLTYFIFTKCLKL  118 (176)
Q Consensus        79 l~~---~L~~~L~l~~~~~L~~l~~~~~--~~~l~~l~~~~c~~l  118 (176)
                      ...   +| ++|+++++ .+..+++...  ...+..+++.++..+
T Consensus        99 ~f~~l~~L-~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i  141 (350)
T 4ay9_X           99 AFQNLPNL-QYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINI  141 (350)
T ss_dssp             SBCCCTTC-CEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTC
T ss_pred             hhhhcccc-cccccccc-ccccCCchhhcccchhhhhhhcccccc
Confidence            433   56 77777654 4544433322  223344455444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.90  E-value=1.1e-08  Score=85.67  Aligned_cols=100  Identities=19%  Similarity=0.323  Sum_probs=43.1

Q ss_pred             cCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh--cCccc
Q 036960            8 GCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL--PSYPE   85 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~--~~L~~   85 (176)
                      ..+++|++|++++|.++.+|. +..+++|++|++++|+++.++. +.  .+++|+.|++++ |.+..++. +.  .+| +
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~--~l~~L~~L~L~~-n~l~~~~~-~~~l~~L-~  334 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-IS--NLKNLTYLTLYF-NNISDISP-VSSLTKL-Q  334 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GG--GCTTCSEEECCS-SCCSCCGG-GGGCTTC-C
T ss_pred             hcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hc--CCCCCCEEECcC-CcCCCchh-hccCccC-C
Confidence            334444444444444444332 4444444444444444444332 33  444455555554 44444332 11  144 4


Q ss_pred             eeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           86 KVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        86 ~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                      .|+++++ .+..++.......++.+++++|
T Consensus       335 ~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          335 RLFFYNN-KVSDVSSLANLTNINWLSAGHN  363 (466)
T ss_dssp             EEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred             EeECCCC-ccCCchhhccCCCCCEEeCCCC
Confidence            5555444 3333333333344555555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.90  E-value=6e-09  Score=89.54  Aligned_cols=108  Identities=16%  Similarity=0.145  Sum_probs=83.9

Q ss_pred             ccCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCc-hh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLP-KL   78 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP-~~   78 (176)
                      ++|..+.  ..+++|++++|.|+++ |..|+.+++|++|++++|+++.+ |..|.  ++++|++|++++ |.+..++ ..
T Consensus        26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~-n~l~~~~~~~  100 (606)
T 3t6q_A           26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ--SQHRLDTLVLTA-NPLIFMAETA  100 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTT-CCCSEECTTT
T ss_pred             cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc--CccccCeeeCCC-CcccccChhh
Confidence            4676664  3799999999999996 56899999999999999999966 67799  999999999999 9987764 34


Q ss_pred             hhc--CccceeeccCCcCCcccc--cccCCCCccEEEeeCCc
Q 036960           79 LLP--SYPEKVDTFMLESLSKLF--RIITTRKLTYFIFTKCL  116 (176)
Q Consensus        79 l~~--~L~~~L~l~~~~~L~~l~--~~~~~~~l~~l~~~~c~  116 (176)
                      +..  +| ++|+++++ .+..++  ......+++.++++++.
T Consensus       101 ~~~l~~L-~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~  140 (606)
T 3t6q_A          101 LSGPKAL-KHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNH  140 (606)
T ss_dssp             TSSCTTC-CEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred             hcccccc-cEeecccc-CcccCCcchhccCCcccEEECCCCc
Confidence            433  78 99999876 455542  12244567777776653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.90  E-value=2.3e-09  Score=85.63  Aligned_cols=85  Identities=24%  Similarity=0.220  Sum_probs=71.9

Q ss_pred             Cccc-cCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960            4 LQDI-GCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP-   81 (176)
Q Consensus         4 P~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-   81 (176)
                      |..+ ..+++|++|++++|.++.+|. ...+++|++|++++|+++.+|..+.  .+++|+.|++++ |.++.+|..+.. 
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~--~l~~L~~L~L~~-N~l~~l~~~~~~l  236 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQ--SAAGVTWISLRN-NKLVLIEKALRFS  236 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGG--GGTTCSEEECTT-SCCCEECTTCCCC
T ss_pred             HHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhc--ccCcccEEECcC-CcccchhhHhhcC
Confidence            3444 468999999999999999864 4459999999999999999998899  999999999999 999999976543 


Q ss_pred             -CccceeeccCCc
Q 036960           82 -SYPEKVDTFMLE   93 (176)
Q Consensus        82 -~L~~~L~l~~~~   93 (176)
                       +| +.|+++++.
T Consensus       237 ~~L-~~L~l~~N~  248 (317)
T 3o53_A          237 QNL-EHFDLRGNG  248 (317)
T ss_dssp             TTC-CEEECTTCC
T ss_pred             CCC-CEEEccCCC
Confidence             67 777777653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.89  E-value=9.3e-09  Score=86.39  Aligned_cols=97  Identities=27%  Similarity=0.378  Sum_probs=62.3

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPE   85 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~   85 (176)
                      .++.+++|++|++++|.++++|...   .+|++|++++|.++.+|. ++  .+++|+.|++++ |.++.+|. ...+| +
T Consensus       190 ~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~--~l~~L~~L~l~~-N~l~~l~~-~~~~L-~  260 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQ--NLPFLTTIYADN-NLLKTLPD-LPPSL-E  260 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CT--TCTTCCEEECCS-SCCSSCCS-CCTTC-C
T ss_pred             cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cC--CCCCCCEEECCC-CcCCcccc-ccccc-C
Confidence            4666777777777777777666432   467777777777777774 77  788888888888 88887774 33567 7


Q ss_pred             eeeccCCcCCcccccccCCCCccEEEeeC
Q 036960           86 KVDTFMLESLSKLFRIITTRKLTYFIFTK  114 (176)
Q Consensus        86 ~L~l~~~~~L~~l~~~~~~~~l~~l~~~~  114 (176)
                      +|+++++ .+..++..  ...++.+++++
T Consensus       261 ~L~l~~N-~l~~l~~~--~~~L~~L~ls~  286 (454)
T 1jl5_A          261 ALNVRDN-YLTDLPEL--PQSLTFLDVSE  286 (454)
T ss_dssp             EEECCSS-CCSCCCCC--CTTCCEEECCS
T ss_pred             EEECCCC-cccccCcc--cCcCCEEECcC
Confidence            7777655 34444322  13344444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.89  E-value=7.2e-09  Score=89.69  Aligned_cols=77  Identities=34%  Similarity=0.368  Sum_probs=39.2

Q ss_pred             CCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccceeeccC
Q 036960           12 LLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFM   91 (176)
Q Consensus        12 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~~L~l~~   91 (176)
                      +|++|++++|.|+++|.   .+++|++|++++|+|+.+|.     .+++|+.|++++ |.++.+|. +..+| ++|++++
T Consensus       121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~-N~L~~lp~-l~~~L-~~L~Ls~  189 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRN-NQLTFLPE-LPESL-EALDVST  189 (571)
T ss_dssp             TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCS-SCCSCCCC-CCTTC-CEEECCS
T ss_pred             CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC-----cCCCcCEEECCC-CCCCCcch-hhCCC-CEEECcC
Confidence            34444444444444443   34445555555555554443     234566666666 66666664 44556 6666655


Q ss_pred             CcCCccccc
Q 036960           92 LESLSKLFR  100 (176)
Q Consensus        92 ~~~L~~l~~  100 (176)
                      + .++.+|.
T Consensus       190 N-~L~~lp~  197 (571)
T 3cvr_A          190 N-LLESLPA  197 (571)
T ss_dssp             S-CCSSCCC
T ss_pred             C-CCCchhh
Confidence            4 4555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.88  E-value=8.6e-09  Score=90.03  Aligned_cols=78  Identities=24%  Similarity=0.310  Sum_probs=49.2

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      ++|..+.  ++|++|++++|.|+.+|.   .+++|++|++++|+|+.+|.     .+++|+.|++++ |.++.+|. ...
T Consensus        54 ~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~-N~l~~l~~-~l~  121 (622)
T 3g06_A           54 TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFS-NPLTHLPA-LPS  121 (622)
T ss_dssp             CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECS-CCCCCCCC-CCT
T ss_pred             ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcC-CcCCCCCC-CCC
Confidence            3555554  677777777777777775   45677777777777777765     345666666666 66666654 333


Q ss_pred             CccceeeccCC
Q 036960           82 SYPEKVDTFML   92 (176)
Q Consensus        82 ~L~~~L~l~~~   92 (176)
                      +| +.|+++++
T Consensus       122 ~L-~~L~L~~N  131 (622)
T 3g06_A          122 GL-CKLWIFGN  131 (622)
T ss_dssp             TC-CEEECCSS
T ss_pred             Cc-CEEECCCC
Confidence            55 55555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.88  E-value=5.8e-09  Score=88.70  Aligned_cols=85  Identities=31%  Similarity=0.371  Sum_probs=70.5

Q ss_pred             CccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCC--Cchhh
Q 036960            4 LQDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQS--LPKLL   79 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~--lP~~l   79 (176)
                      |..|+++++|++|++++|.++.+| ..|+.+++|++|++++|+++.+|. .++  ++++|++|++++ |.++.  +|..+
T Consensus        69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~--~l~~L~~L~L~~-n~l~~~~lp~~~  145 (570)
T 2z63_A           69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAH-NLIQSFKLPEYF  145 (570)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCT--TCTTCCEEECCS-SCCCCCCCCGGG
T ss_pred             cccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccc--ccccccEEecCC-CccceecChhhh
Confidence            345788999999999999998865 578999999999999999998876 578  899999999999 88875  67766


Q ss_pred             hc--CccceeeccCC
Q 036960           80 LP--SYPEKVDTFML   92 (176)
Q Consensus        80 ~~--~L~~~L~l~~~   92 (176)
                      ..  +| ++|+++++
T Consensus       146 ~~l~~L-~~L~l~~n  159 (570)
T 2z63_A          146 SNLTNL-EHLDLSSN  159 (570)
T ss_dssp             GGCTTC-CEEECTTS
T ss_pred             cccCCC-CEEeCcCC
Confidence            64  78 88888765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.86  E-value=9.5e-09  Score=92.19  Aligned_cols=107  Identities=18%  Similarity=0.159  Sum_probs=65.4

Q ss_pred             CccccCCCCCcEEeccCCC-Cccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCC-Cchh-
Q 036960            4 LQDIGCLSLLKELNLCVND-FQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQS-LPKL-   78 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~-l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~-lP~~-   78 (176)
                      |..|.++++|++|++++|. +..+ |..|+++++|++|++++|.|+.+ |..|.  ++++|++|++++ |.+.. +|.. 
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~-n~l~~~~~~~~  117 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ--GLFHLFELRLYF-CGLSDAVLKDG  117 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC--SCSSCCCEECTT-CCCSSCCSTTC
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc--CCcccCEeeCcC-CCCCcccccCc
Confidence            4566677777777777773 3345 55677777777777777777754 56677  777777777777 66653 4432 


Q ss_pred             -hhc--CccceeeccCCcCCcccc---cccCCCCccEEEeeCC
Q 036960           79 -LLP--SYPEKVDTFMLESLSKLF---RIITTRKLTYFIFTKC  115 (176)
Q Consensus        79 -l~~--~L~~~L~l~~~~~L~~l~---~~~~~~~l~~l~~~~c  115 (176)
                       +..  +| ++|+++++. +..+.   ......+++.++++++
T Consensus       118 ~~~~L~~L-~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          118 YFRNLKAL-TRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             CCSSCSSC-CEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             cccccCCC-CEEECCCCc-ccccccchhHhhCCCCCEEECCCC
Confidence             222  66 777776553 33331   1224456666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.84  E-value=3.8e-09  Score=89.46  Aligned_cols=86  Identities=23%  Similarity=0.206  Sum_probs=74.3

Q ss_pred             cCcccc-CCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960            3 ILQDIG-CLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         3 lP~~l~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      +|..+. .+++|++|++++|.|+++|. ...+++|++|++++|.|+.+|..+.  .+++|+.|++++ |.+..+|..+..
T Consensus       160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~--~l~~L~~L~Ls~-N~l~~lp~~l~~  235 (487)
T 3oja_A          160 NFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQ--SAAGVTWISLRN-NKLVLIEKALRF  235 (487)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGG--GGTTCSEEECTT-SCCCEECTTCCC
T ss_pred             ChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHc--CCCCccEEEecC-CcCcccchhhcc
Confidence            455665 79999999999999999864 4569999999999999999998899  999999999999 999999976653


Q ss_pred             --CccceeeccCCc
Q 036960           82 --SYPEKVDTFMLE   93 (176)
Q Consensus        82 --~L~~~L~l~~~~   93 (176)
                        +| +.|+++++.
T Consensus       236 l~~L-~~L~l~~N~  248 (487)
T 3oja_A          236 SQNL-EHFDLRGNG  248 (487)
T ss_dssp             CTTC-CEEECTTCC
T ss_pred             CCCC-CEEEcCCCC
Confidence              77 888887764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.83  E-value=1.3e-08  Score=81.86  Aligned_cols=97  Identities=12%  Similarity=0.184  Sum_probs=79.5

Q ss_pred             cEEeccCC-CCccccccccCCCCCcEEEeeC-CCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc---Ccccee
Q 036960           14 KELNLCVN-DFQRLPASIGSLSSLKRMNLVE-NKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP---SYPEKV   87 (176)
Q Consensus        14 ~~L~L~~n-~l~~lp~~~~~l~~L~~L~l~~-n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~---~L~~~L   87 (176)
                      ..++.+++ .|+.+|. +..+++|++|+|++ |.|+.+|. .|.  ++++|+.|+|++ |.|+.+|+..+.   +| ++|
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L-~~L   85 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVK-SGLRFVAPDAFHFTPRL-SRL   85 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCS-SCCCEECTTGGGSCSCC-CEE
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCC-CccceeCHHHhcCCcCC-CEE
Confidence            45788988 9999999 99999999999996 99998875 589  999999999999 999988865543   78 999


Q ss_pred             eccCCcCCccccccc-CCCCccEEEeeCCc
Q 036960           88 DTFMLESLSKLFRII-TTRKLTYFIFTKCL  116 (176)
Q Consensus        88 ~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~  116 (176)
                      +++++ .|..++... ....++.+.+.++.
T Consensus        86 ~l~~N-~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           86 NLSFN-ALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             ECCSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             eCCCC-ccceeCHHHcccCCceEEEeeCCC
Confidence            99875 688776443 33458888887643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.82  E-value=1.5e-08  Score=90.91  Aligned_cols=107  Identities=19%  Similarity=0.243  Sum_probs=83.2

Q ss_pred             ccCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCC-Cccc-CcccccccCCccceeeccccCCCCCC-ch
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENK-LDNL-PITISIKQISPLRTLELRNCNTLQSL-PK   77 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~-l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~l-P~   77 (176)
                      .+|.   -.+++++|+|++|.|+.+ |..+..+++|++|++++|. +..+ |..|.  ++++|++|++++ |.++.+ |.
T Consensus        18 ~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--~L~~L~~L~Ls~-N~l~~~~p~   91 (844)
T 3j0a_A           18 QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR--NLPNLRILDLGS-SKIYFLHPD   91 (844)
T ss_dssp             CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS--SCTTCCEEECTT-CCCCEECTT
T ss_pred             CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc--CCCCCCEEECCC-CcCcccCHh
Confidence            3565   457899999999999995 6799999999999999995 5577 66799  999999999999 999876 54


Q ss_pred             hhhc--CccceeeccCCcCCcc-ccc---ccCCCCccEEEeeCCc
Q 036960           78 LLLP--SYPEKVDTFMLESLSK-LFR---IITTRKLTYFIFTKCL  116 (176)
Q Consensus        78 ~l~~--~L~~~L~l~~~~~L~~-l~~---~~~~~~l~~l~~~~c~  116 (176)
                      .+..  +| ++|+++++. +.. ++.   .....+++.++++++.
T Consensus        92 ~~~~l~~L-~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~  134 (844)
T 3j0a_A           92 AFQGLFHL-FELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ  134 (844)
T ss_dssp             SSCSCSSC-CCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred             HccCCccc-CEeeCcCCC-CCcccccCccccccCCCCEEECCCCc
Confidence            4543  78 999998874 443 322   2345677888776653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.80  E-value=1.1e-10  Score=87.23  Aligned_cols=85  Identities=19%  Similarity=0.205  Sum_probs=74.0

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCch--hhh
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPK--LLL   80 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~--~l~   80 (176)
                      +| .+..+++|++|++++|.++.+|..+..+++|++|++++|+++.+| .+.  .+++|+.|++++ |.++.+|.  .+.
T Consensus        63 l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~--~l~~L~~L~l~~-N~i~~~~~~~~l~  137 (198)
T 1ds9_A           63 IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE--KLVNLRVLYMSN-NKITNWGEIDKLA  137 (198)
T ss_dssp             CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH--HHHHSSEEEESE-EECCCHHHHHHHT
T ss_pred             cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccc--cCCCCCEEECCC-CcCCchhHHHHHh
Confidence            56 778899999999999999999988888899999999999999987 688  899999999999 99998874  333


Q ss_pred             c--CccceeeccCCc
Q 036960           81 P--SYPEKVDTFMLE   93 (176)
Q Consensus        81 ~--~L~~~L~l~~~~   93 (176)
                      .  +| ++|+++++.
T Consensus       138 ~l~~L-~~L~l~~N~  151 (198)
T 1ds9_A          138 ALDKL-EDLLLAGNP  151 (198)
T ss_dssp             TTTTC-SEEEECSCH
T ss_pred             cCCCC-CEEEecCCc
Confidence            2  77 888887763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.77  E-value=4.5e-08  Score=85.50  Aligned_cols=97  Identities=27%  Similarity=0.296  Sum_probs=50.0

Q ss_pred             CCCcEEeccCCCCccccccccC-----------------CCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCC
Q 036960           11 SLLKELNLCVNDFQRLPASIGS-----------------LSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQ   73 (176)
Q Consensus        11 ~~L~~L~L~~n~l~~lp~~~~~-----------------l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~   73 (176)
                      ++|+.|++++|.|+++|..+..                 +++|++|++++|.|+.+|   .  .+++|+.|++++ |.++
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~--~l~~L~~L~Ls~-N~L~  254 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---V--LPSELKELMVSG-NRLT  254 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---C--CCTTCCEEECCS-SCCS
T ss_pred             CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---C--CCCcCcEEECCC-CCCC
Confidence            5555555555555555432211                 134555555555555554   2  445566666666 5666


Q ss_pred             CCchhhhcCccceeeccCCcCCccccccc-CCCCccEEEeeCCc
Q 036960           74 SLPKLLLPSYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCL  116 (176)
Q Consensus        74 ~lP~~l~~~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~  116 (176)
                      .+|. ...+| +.|+++++ .+..+|... ...+++.++++++.
T Consensus       255 ~lp~-~~~~L-~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          255 SLPM-LPSGL-LSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCCC-CCTTC-CEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             cCCc-ccccC-cEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence            6664 33355 66666554 455554322 33455666665544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.72  E-value=5.9e-09  Score=83.15  Aligned_cols=88  Identities=17%  Similarity=0.224  Sum_probs=51.3

Q ss_pred             cccCCCCCcEEeccCCCCcc--ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCC--CCchhhh
Q 036960            6 DIGCLSLLKELNLCVNDFQR--LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQ--SLPKLLL   80 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~--~lP~~l~   80 (176)
                      .+..+++|++|++++|.++.  +|..+..+++|++|++++|.++ ..|..+.  .+++|+.|++++|..++  .+|..+.
T Consensus        88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~l~~~~~  165 (336)
T 2ast_B           88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLS  165 (336)
T ss_dssp             SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh--cCCCCCEEECCCCCCCCHHHHHHHHh
Confidence            34456666667776666654  5556666666666666666665 4555566  66666666666632454  2443222


Q ss_pred             --cCccceeeccCCcCCc
Q 036960           81 --PSYPEKVDTFMLESLS   96 (176)
Q Consensus        81 --~~L~~~L~l~~~~~L~   96 (176)
                        ++| ++|++++|..+.
T Consensus       166 ~~~~L-~~L~l~~~~~l~  182 (336)
T 2ast_B          166 SCSRL-DELNLSWCFDFT  182 (336)
T ss_dssp             HCTTC-CEEECCCCTTCC
T ss_pred             cCCCC-CEEcCCCCCCcC
Confidence              256 666666654443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.68  E-value=5.5e-09  Score=83.33  Aligned_cols=106  Identities=22%  Similarity=0.310  Sum_probs=45.5

Q ss_pred             ccCCCCCcEEeccCC-CCcc--ccccccCCCCCcEEEeeCC-CCcc--cCcccccccCC-ccceeeccccC--CC--CCC
Q 036960            7 IGCLSLLKELNLCVN-DFQR--LPASIGSLSSLKRMNLVEN-KLDN--LPITISIKQIS-PLRTLELRNCN--TL--QSL   75 (176)
Q Consensus         7 l~~l~~L~~L~L~~n-~l~~--lp~~~~~l~~L~~L~l~~n-~l~~--lP~~~~~~~l~-~L~~L~l~~cn--~l--~~l   75 (176)
                      ++.+++|++|++++| .++.  +|..+..+++|++|++++| .++.  +|..+.  .++ +|+.|++++ |  .+  ..+
T Consensus       138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~l~~~L~~L~l~~-~~~~~~~~~l  214 (336)
T 2ast_B          138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA--HVSETITQLNLSG-YRKNLQKSDL  214 (336)
T ss_dssp             HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH--HSCTTCCEEECCS-CGGGSCHHHH
T ss_pred             HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH--hcccCCCEEEeCC-CcccCCHHHH
Confidence            344444444444444 3442  3333444444455555444 4442  333344  444 555555554 3  22  223


Q ss_pred             chhhh--cCccceeeccCCcCCcc--cccccCCCCccEEEeeCCc
Q 036960           76 PKLLL--PSYPEKVDTFMLESLSK--LFRIITTRKLTYFIFTKCL  116 (176)
Q Consensus        76 P~~l~--~~L~~~L~l~~~~~L~~--l~~~~~~~~l~~l~~~~c~  116 (176)
                      |..+.  ++| ++|++++|..+..  ++......+++.+++++|.
T Consensus       215 ~~~~~~~~~L-~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          215 STLVRRCPNL-VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HHHHHHCTTC-SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             HHHHhhCCCC-CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            32221  145 5555555543221  1112233455566665554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.56  E-value=1.6e-08  Score=82.56  Aligned_cols=105  Identities=17%  Similarity=0.238  Sum_probs=56.0

Q ss_pred             ccCCCCCcEEeccCCCCcc------ccccccCCCCCcEEEeeCCCC-----cccCcccccccCCccceeeccccCCCCC-
Q 036960            7 IGCLSLLKELNLCVNDFQR------LPASIGSLSSLKRMNLVENKL-----DNLPITISIKQISPLRTLELRNCNTLQS-   74 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~------lp~~~~~l~~L~~L~l~~n~l-----~~lP~~~~~~~l~~L~~L~l~~cn~l~~-   74 (176)
                      +..+++|++|++++|.++.      +|..+..+++|++|++++|.+     ..+|..+.  .+++|+.|++++ |.++. 
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~--~~~~L~~L~L~~-n~i~~~  259 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK--SWPNLRELGLND-CLLSAR  259 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG--GCTTCCEEECTT-CCCCHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc--cCCCcCEEECCC-CCCchh
Confidence            4445566666666666651      232555666666666666666     34555555  666666666666 55543 


Q ss_pred             ----Cchhh----hcCccceeeccCCcCCcc-----ccccc-C-CCCccEEEeeCCc
Q 036960           75 ----LPKLL----LPSYPEKVDTFMLESLSK-----LFRII-T-TRKLTYFIFTKCL  116 (176)
Q Consensus        75 ----lP~~l----~~~L~~~L~l~~~~~L~~-----l~~~~-~-~~~l~~l~~~~c~  116 (176)
                          +|..+    ..+| ++|+++++ .+..     ++... . ...++.+++++|.
T Consensus       260 ~~~~l~~~l~~~~~~~L-~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          260 GAAAVVDAFSKLENIGL-QTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHHTCSSCCC-CEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hHHHHHHHHhhccCCCe-EEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence                23333    2355 66666554 2333     33322 1 3556666665554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.45  E-value=5.9e-08  Score=79.14  Aligned_cols=86  Identities=22%  Similarity=0.224  Sum_probs=71.7

Q ss_pred             cccCCCCCcEEeccCCCCc-----cccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCC-
Q 036960            6 DIGCLSLLKELNLCVNDFQ-----RLPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQS-   74 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~-   74 (176)
                      .+..+++|++|++++|.++     .+|..+..+++|++|++++|.|+.     +|..+..+.+++|+.|++++ |.++. 
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~-n~i~~~  289 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY-NEIELD  289 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS-SCCBHH
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcC-CcCCHH
Confidence            6788999999999999994     488889999999999999999984     46666300489999999999 99987 


Q ss_pred             ----Cchhhh---cCccceeeccCCc
Q 036960           75 ----LPKLLL---PSYPEKVDTFMLE   93 (176)
Q Consensus        75 ----lP~~l~---~~L~~~L~l~~~~   93 (176)
                          +|..+.   ++| ++|+++++.
T Consensus       290 g~~~l~~~l~~~l~~L-~~L~l~~N~  314 (386)
T 2ca6_A          290 AVRTLKTVIDEKMPDL-LFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHHHHCTTC-CEEECTTSB
T ss_pred             HHHHHHHHHHhcCCCc-eEEEccCCc
Confidence                887762   478 999998763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=6.1e-07  Score=71.77  Aligned_cols=95  Identities=19%  Similarity=0.272  Sum_probs=69.7

Q ss_pred             CCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccc-eeeccccCCCCCCchhhhcCccce
Q 036960           10 LSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLR-TLELRNCNTLQSLPKLLLPSYPEK   86 (176)
Q Consensus        10 l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~-~L~l~~cn~l~~lP~~l~~~L~~~   86 (176)
                      +++|+.+++++|+++.+|. .|.++.+|+.+++.+| ++.++.. |.  ++.+|+ .+++.+  .++.+++..+      
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~--~~~~L~~~l~l~~--~l~~I~~~aF------  293 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS--NCGRLAGTLELPA--SVTAIEFGAF------  293 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCEEEEECT--TCCEECTTTT------
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh--CChhccEEEEEcc--cceEEchhhh------
Confidence            7899999999999999887 6899999999999998 8888765 88  999999 999877  6777776555      


Q ss_pred             eeccCCcCCcccccccCCCCccEE---EeeCCcCccc
Q 036960           87 VDTFMLESLSKLFRIITTRKLTYF---IFTKCLKLNK  120 (176)
Q Consensus        87 L~l~~~~~L~~l~~~~~~~~l~~l---~~~~c~~l~~  120 (176)
                         .+|.+|+.+  ....+.++.+   .|.+|.+|+.
T Consensus       294 ---~~c~~L~~l--~l~~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          294 ---MGCDNLRYV--LATGDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             ---TTCTTEEEE--EECSSCCCEECTTTTCTTCCCCE
T ss_pred             ---hCCccCCEE--EeCCCccCccchhhhcCCcchhh
Confidence               344445544  2323334333   3566666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.37  E-value=2.4e-07  Score=75.12  Aligned_cols=62  Identities=23%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             CCCCcEEeccCCCCcccc-----ccccCCC-CCcEEEeeCCCCccc-CcccccccC-----CccceeeccccCCCCC
Q 036960           10 LSLLKELNLCVNDFQRLP-----ASIGSLS-SLKRMNLVENKLDNL-PITISIKQI-----SPLRTLELRNCNTLQS   74 (176)
Q Consensus        10 l~~L~~L~L~~n~l~~lp-----~~~~~l~-~L~~L~l~~n~l~~l-P~~~~~~~l-----~~L~~L~l~~cn~l~~   74 (176)
                      .++|++|++++|.++..+     ..+..++ +|++|++++|.|+.. +..+.  .+     ++|+.|++++ |.++.
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--~~l~~~~~~L~~L~Ls~-n~l~~   94 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV--QILAAIPANVTSLNLSG-NFLSY   94 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH--HHHHTSCTTCCEEECCS-SCGGG
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH--HHHhccCCCccEEECcC-CcCCh
Confidence            344666666666655543     3445555 566666666555533 22233  32     5555555555 55543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.31  E-value=1.8e-07  Score=75.86  Aligned_cols=78  Identities=21%  Similarity=0.281  Sum_probs=46.1

Q ss_pred             CCCcEEeccCCCCcc-----ccccccCCC-CCcEEEeeCCCCcccCc-----ccccccC-CccceeeccccCCCCC----
Q 036960           11 SLLKELNLCVNDFQR-----LPASIGSLS-SLKRMNLVENKLDNLPI-----TISIKQI-SPLRTLELRNCNTLQS----   74 (176)
Q Consensus        11 ~~L~~L~L~~n~l~~-----lp~~~~~l~-~L~~L~l~~n~l~~lP~-----~~~~~~l-~~L~~L~l~~cn~l~~----   74 (176)
                      ++|++|++++|.++.     ++..+..+. +|++|++++|+|+..+.     .+.  .. ++|+.|++++ |.++.    
T Consensus       138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~-N~i~~~~~~  214 (362)
T 3goz_A          138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA--SIPASVTSLDLSA-NLLGLKSYA  214 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH--TSCTTCCEEECTT-SCGGGSCHH
T ss_pred             CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHH--hCCCCCCEEECCC-CCCChhHHH
Confidence            467777777777763     444445554 67777777777664432     223  33 4677777777 66655    


Q ss_pred             -Cchhhh---cCccceeeccCC
Q 036960           75 -LPKLLL---PSYPEKVDTFML   92 (176)
Q Consensus        75 -lP~~l~---~~L~~~L~l~~~   92 (176)
                       ++..+.   .+| ++|+++++
T Consensus       215 ~l~~~l~~~~~~L-~~L~Ls~N  235 (362)
T 3goz_A          215 ELAYIFSSIPNHV-VSLNLCLN  235 (362)
T ss_dssp             HHHHHHHHSCTTC-CEEECCSS
T ss_pred             HHHHHHhcCCCCc-eEEECcCC
Confidence             444332   256 66776654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=1.6e-06  Score=68.14  Aligned_cols=64  Identities=30%  Similarity=0.365  Sum_probs=48.7

Q ss_pred             CCCCCcEEeccCCCCcccc---ccccCCCCCcEEEeeCCCCcccCcccccccCC--ccceeeccccCCCC-CCc
Q 036960            9 CLSLLKELNLCVNDFQRLP---ASIGSLSSLKRMNLVENKLDNLPITISIKQIS--PLRTLELRNCNTLQ-SLP   76 (176)
Q Consensus         9 ~l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~--~L~~L~l~~cn~l~-~lP   76 (176)
                      ++++|++|+|++|+|++++   ..+..+++|+.|+|++|+|+.+. .+.  .+.  +|+.|++++ |.+. .+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~--~l~~l~L~~L~L~~-Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELD--KIKGLKLEELWLDG-NSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGG--GGTTSCCSEEECTT-STTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhh--hcccCCcceEEccC-CcCccccC
Confidence            5778889999999888754   45678888999999999888763 344  444  888899988 8884 355

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.11  E-value=4.3e-06  Score=66.81  Aligned_cols=82  Identities=12%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             cCc-cccCCCCCcEEeccCCCCccccc-cccCCCCCc-EEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchh
Q 036960            3 ILQ-DIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLK-RMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKL   78 (176)
Q Consensus         3 lP~-~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~-~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~   78 (176)
                      ||+ .|.++++|+.+++.+| ++.++. .|.++.+|+ .+++.+ .++.++. .|.  ++++|+.+++++ |.++.++..
T Consensus       241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~--~c~~L~~l~l~~-n~i~~I~~~  315 (329)
T 3sb4_A          241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM--GCDNLRYVLATG-DKITTLGDE  315 (329)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT--TCTTEEEEEECS-SCCCEECTT
T ss_pred             ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhh--CCccCCEEEeCC-CccCccchh
Confidence            444 3788999999999998 888877 799999999 999998 8888865 588  999999999999 999999976


Q ss_pred             hhcCccceeeccCCcCCccc
Q 036960           79 LLPSYPEKVDTFMLESLSKL   98 (176)
Q Consensus        79 l~~~L~~~L~l~~~~~L~~l   98 (176)
                      .+         .+|++|+.+
T Consensus       316 aF---------~~~~~L~~l  326 (329)
T 3sb4_A          316 LF---------GNGVPSKLI  326 (329)
T ss_dssp             TT---------CTTCCCCEE
T ss_pred             hh---------cCCcchhhh
Confidence            66         355566544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.10  E-value=9.3e-07  Score=73.18  Aligned_cols=67  Identities=24%  Similarity=0.310  Sum_probs=39.2

Q ss_pred             CccccCCCCCcEEeccCCCCcc-cccc-ccCCC----CCcEEEeeCCCCc-----ccCcccccccCCccceeeccccCCC
Q 036960            4 LQDIGCLSLLKELNLCVNDFQR-LPAS-IGSLS----SLKRMNLVENKLD-----NLPITISIKQISPLRTLELRNCNTL   72 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~-lp~~-~~~l~----~L~~L~l~~n~l~-----~lP~~~~~~~l~~L~~L~l~~cn~l   72 (176)
                      |..+..+++|++|++++|.++. .+.. ...+.    +|++|++++|+++     .+|..+.  .+++|+.|++++ |.+
T Consensus        49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~-n~i  125 (461)
T 1z7x_W           49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR--TLPTLQELHLSD-NLL  125 (461)
T ss_dssp             HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT--SCTTCCEEECCS-SBC
T ss_pred             HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc--cCCceeEEECCC-CcC
Confidence            3445556667777777666655 1222 22333    5677777777666     3455566  666777777776 655


Q ss_pred             C
Q 036960           73 Q   73 (176)
Q Consensus        73 ~   73 (176)
                      +
T Consensus       126 ~  126 (461)
T 1z7x_W          126 G  126 (461)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.08  E-value=7.4e-07  Score=73.78  Aligned_cols=65  Identities=23%  Similarity=0.289  Sum_probs=34.2

Q ss_pred             ccccCCCCCcEEeccCCCCccc------cccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCC
Q 036960            5 QDIGCLSLLKELNLCVNDFQRL------PASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTL   72 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~l------p~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l   72 (176)
                      ..+..+++|++|++++|.++..      +..+..+++|++|++++|.++.     +|..+.  .+++|+.|++++ |.+
T Consensus       221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~-n~i  296 (461)
T 1z7x_W          221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR--AKESLKELSLAG-NEL  296 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH--HCTTCCEEECTT-CCC
T ss_pred             HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh--hCCCcceEECCC-CCC
Confidence            3344455566666666555442      1112245556666666665554     444455  556666666666 555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.74  E-value=2.2e-05  Score=57.99  Aligned_cols=94  Identities=12%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             ccccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCC-----Cchh--hhcCccceeeccCCcCCcc
Q 036960           26 LPASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQS-----LPKL--LLPSYPEKVDTFMLESLSK   97 (176)
Q Consensus        26 lp~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~-----lP~~--l~~~L~~~L~l~~~~~L~~   97 (176)
                      +|.....-..|+.||++++.|+.. -..+.  ++++|+.|++++|..++.     +...  ..++| ++|++++|..++.
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L-~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM-LEMEIISCGNVTD  129 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHC-CEEEEESCTTCCH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCC-CEEEcCCCCcCCH
Confidence            444332234577777777776632 12345  677777777777766642     1110  11246 7777777766653


Q ss_pred             c--ccccCCCCccEEEeeCCcCccccc
Q 036960           98 L--FRIITTRKLTYFIFTKCLKLNKSG  122 (176)
Q Consensus        98 l--~~~~~~~~l~~l~~~~c~~l~~~~  122 (176)
                      -  .......+++.+++++|..+....
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCTTCCCHH
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCCchH
Confidence            2  122235678888888888887643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.72  E-value=1.6e-05  Score=65.01  Aligned_cols=61  Identities=18%  Similarity=0.278  Sum_probs=30.8

Q ss_pred             CCCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCC
Q 036960           10 LSLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQ   73 (176)
Q Consensus        10 l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~   73 (176)
                      .++|++|+|++|.|+.     ++..+...++|++|+|++|.|+.     ++..+.  ..++|+.|++++ |.++
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~--~~~~L~~L~Ls~-N~i~  224 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD--RNRQLQELNVAY-NGAG  224 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG--GCSCCCEEECCS-SCCC
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh--cCCCcCeEECCC-CCCC
Confidence            3455555555555543     33333455555555555555542     223344  445555555555 5554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.70  E-value=1.5e-05  Score=58.79  Aligned_cols=106  Identities=15%  Similarity=0.162  Sum_probs=75.1

Q ss_pred             cccCCCCCcEEeccCC-CCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCC
Q 036960            6 DIGCLSLLKELNLCVN-DFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQS   74 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~   74 (176)
                      .+...++|++|+|++| .|..     +...+...++|++|+|++|.|..     +...+.  ..+.|++|++++ |.++.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~--~n~~L~~L~L~~-N~i~~  107 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--VNNTLKSLNVES-NFISG  107 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--HCSSCCEEECCS-SCCCH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH--hCCCcCEEECcC-CcCCH
Confidence            3566789999999999 8875     45567778999999999999873     344455  668999999999 98864


Q ss_pred             -----Cchhhhc--Cccceeec--cCCcCCcc-----ccc-ccCCCCccEEEeeCCc
Q 036960           75 -----LPKLLLP--SYPEKVDT--FMLESLSK-----LFR-IITTRKLTYFIFTKCL  116 (176)
Q Consensus        75 -----lP~~l~~--~L~~~L~l--~~~~~L~~-----l~~-~~~~~~l~~l~~~~c~  116 (176)
                           +...+..  +| ++|++  +++ .+..     +.. ......++.++++.+.
T Consensus       108 ~g~~~l~~~L~~n~~L-~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          108 SGILALVEALQSNTSL-IELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHGGGGCSSC-CEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHhCCCc-eEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence                 3333332  78 89999  444 3432     111 1135678888887653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.63  E-value=9.4e-05  Score=51.66  Aligned_cols=55  Identities=22%  Similarity=0.328  Sum_probs=46.1

Q ss_pred             cEEeccCCCCc--cccccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCC
Q 036960           14 KELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQ   73 (176)
Q Consensus        14 ~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~   73 (176)
                      ..++.+++.++  .+|..+.  .+|++|+|++|+|+.+|.. |.  .+++|+.|+|++ |.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~-NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGA-NPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCS-SCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhh--hccccCEEEecC-CCee
Confidence            47888999998  8886543  4699999999999999876 67  899999999999 8774

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.63  E-value=2.3e-05  Score=66.78  Aligned_cols=65  Identities=14%  Similarity=0.143  Sum_probs=32.8

Q ss_pred             CCCCCcEEeccCCCCccc-----cccccCCCCCcEEEeeCCCCc-----ccCcccccccCCccceeeccccCCCCCCc
Q 036960            9 CLSLLKELNLCVNDFQRL-----PASIGSLSSLKRMNLVENKLD-----NLPITISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus         9 ~l~~L~~L~L~~n~l~~l-----p~~~~~l~~L~~L~l~~n~l~-----~lP~~~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      .+++|++|++++|.+++.     +..+..+++|++|++++|.++     .++..+.  ++++|+.|++++ +.+..+|
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~--~~~~L~~L~L~~-~~~~~l~  236 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR--NCRSLVSVKVGD-FEILELV  236 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH--HCTTCCEEECSS-CBGGGGH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh--hCCCCcEEeccC-ccHHHHH
Confidence            456666666666654332     222344555566666555554     2222334  455555555555 4444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.62  E-value=6.6e-05  Score=55.38  Aligned_cols=92  Identities=9%  Similarity=0.108  Sum_probs=65.6

Q ss_pred             cCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCC-Cccc-CcccccccC----CccceeeccccCCCCC-
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENK-LDNL-PITISIKQI----SPLRTLELRNCNTLQS-   74 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~-l~~l-P~~~~~~~l----~~L~~L~l~~cn~l~~-   74 (176)
                      +|.....-..|+.|+++++.|+.. -..+..+++|+.|+|++|. |+.- =..+.  .+    ++|+.|++++|.+++. 
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~--~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS--QLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH--TCHHHHHHCCEEEEESCTTCCHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH--hcccccCCCCEEEcCCCCcCCHH
Confidence            455433334699999999998772 1357899999999999995 7731 12244  43    4799999999988863 


Q ss_pred             -Cchhhh--cCccceeeccCCcCCccc
Q 036960           75 -LPKLLL--PSYPEKVDTFMLESLSKL   98 (176)
Q Consensus        75 -lP~~l~--~~L~~~L~l~~~~~L~~l   98 (176)
                       +- .+.  ++| ++|++++|+.++..
T Consensus       131 Gl~-~L~~~~~L-~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          131 GII-ALHHFRNL-KYLFLSDLPGVKEK  155 (176)
T ss_dssp             HHH-HGGGCTTC-CEEEEESCTTCCCH
T ss_pred             HHH-HHhcCCCC-CEEECCCCCCCCch
Confidence             21 122  378 99999999887753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.56  E-value=5.2e-05  Score=55.84  Aligned_cols=82  Identities=10%  Similarity=0.104  Sum_probs=47.1

Q ss_pred             cccccCCCCCcEEEeeCC-CCcc-----cCcccccccCCccceeeccccCCCCC-----Cchhhh--cCccceeeccCCc
Q 036960           27 PASIGSLSSLKRMNLVEN-KLDN-----LPITISIKQISPLRTLELRNCNTLQS-----LPKLLL--PSYPEKVDTFMLE   93 (176)
Q Consensus        27 p~~~~~l~~L~~L~l~~n-~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~-----lP~~l~--~~L~~~L~l~~~~   93 (176)
                      ...+...++|++|++++| .|..     +...+.  ..++|+.|++++ |.++.     +...+.  .+| ++|+++++ 
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~--~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L-~~L~L~~N-  103 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK--TNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTL-KSLNVESN-  103 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT--TCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSC-CEEECCSS-
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH--hCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCc-CEEECcCC-
Confidence            334566777888888887 6652     333455  567788888888 77643     222222  267 77777665 


Q ss_pred             CCcc-----ccc-ccCCCCccEEEee
Q 036960           94 SLSK-----LFR-IITTRKLTYFIFT  113 (176)
Q Consensus        94 ~L~~-----l~~-~~~~~~l~~l~~~  113 (176)
                      .+..     +.. ......++.++++
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~  129 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRID  129 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECC
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEec
Confidence            2332     111 1234567777773

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.52  E-value=2.4e-05  Score=63.95  Aligned_cols=69  Identities=20%  Similarity=0.239  Sum_probs=55.8

Q ss_pred             CccccCCCCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCC
Q 036960            4 LQDIGCLSLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQ   73 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~   73 (176)
                      +..+...++|++|+|++|.|+.     ++..+...++|++|++++|.|+.     ++..+.  ..++|++|++++ |.++
T Consensus       176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~--~~~~L~~L~Ls~-N~i~  252 (372)
T 3un9_A          176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR--EHPSLELLHLYF-NELS  252 (372)
T ss_dssp             HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH--HCSSCCEEECTT-SSCC
T ss_pred             HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH--hCCCCCEEeccC-CCCC
Confidence            3445678899999999999986     45567788899999999999984     344455  678999999999 9886


Q ss_pred             CC
Q 036960           74 SL   75 (176)
Q Consensus        74 ~l   75 (176)
                      ..
T Consensus       253 ~~  254 (372)
T 3un9_A          253 SE  254 (372)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.49  E-value=0.00033  Score=57.81  Aligned_cols=68  Identities=21%  Similarity=0.243  Sum_probs=43.0

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchh
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKL   78 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~   78 (176)
                      .|.++++|+.+++.+|+++.+|...-...+|+.+.+.. .++.++.. |.  ++++|+.+.+.. + ++.++..
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~--~~~~L~~l~l~~-~-l~~I~~~  243 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFL--KTSQLKTIEIPE-N-VSTIGQE  243 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTT--TCTTCCCEECCT-T-CCEECTT
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhh--CCCCCCEEecCC-C-ccCcccc
Confidence            35667777777777777777766443456777777763 36666543 66  677777777765 3 4444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.44  E-value=0.00013  Score=62.14  Aligned_cols=58  Identities=16%  Similarity=0.100  Sum_probs=32.2

Q ss_pred             cCCCCCcEEeccCCCCc-----cccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeecc
Q 036960            8 GCLSLLKELNLCVNDFQ-----RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELR   67 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~   67 (176)
                      ..+++|++|++++|.++     .++..+..+++|++|++++|.+..+|..+.  .+++|+.|+++
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~--~~~~L~~L~l~  251 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK--AAANLEEFCGG  251 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH--HCTTCCEEEEC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh--hhhHHHhhccc
Confidence            34566666666666664     134444556666666666666555554444  44444444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.42  E-value=6.7e-05  Score=58.90  Aligned_cols=61  Identities=20%  Similarity=0.159  Sum_probs=47.9

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCC--CCcEEEeeCCCCc-ccCc-------ccccccCCccceeec
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLS--SLKRMNLVENKLD-NLPI-------TISIKQISPLRTLEL   66 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~--~L~~L~l~~n~l~-~lP~-------~~~~~~l~~L~~L~l   66 (176)
                      +|..+..+++|+.|+|++|+|+++. .+..+.  +|++|++++|.+. .+|.       .+.  .+++|+.||=
T Consensus       188 l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~--~~P~L~~LDg  258 (267)
T 3rw6_A          188 MSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE--RFPKLLRLDG  258 (267)
T ss_dssp             GTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH--HCTTCCEESS
T ss_pred             chhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHH--HCcccCeECC
Confidence            4556678999999999999999873 455555  9999999999998 5663       256  7888888763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.42  E-value=2.7e-05  Score=66.28  Aligned_cols=104  Identities=18%  Similarity=0.244  Sum_probs=57.7

Q ss_pred             CCCCCcEEeccCCCCcc-cccccc-CCCCCcEEEeeCC-CCcc--cCcccccccCCccceeeccccCCCCCCc-hhh---
Q 036960            9 CLSLLKELNLCVNDFQR-LPASIG-SLSSLKRMNLVEN-KLDN--LPITISIKQISPLRTLELRNCNTLQSLP-KLL---   79 (176)
Q Consensus         9 ~l~~L~~L~L~~n~l~~-lp~~~~-~l~~L~~L~l~~n-~l~~--lP~~~~~~~l~~L~~L~l~~cn~l~~lP-~~l---   79 (176)
                      .+++|++|++++|.++. .+..+. .+++|++|++++| .++.  ++..+.  ++++|++|++++ |.++... ..+   
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~--~~~~L~~L~L~~-~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA--TCRNLKELDLRE-SDVDDVSGHWLSHF  179 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHH--HCTTCCEEECTT-CEEECCCGGGGGGS
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHH--hCCCCCEEeCcC-CccCCcchHHHHHH
Confidence            45677777777777665 333443 5677777777777 4553  444455  677777787777 4443211 111   


Q ss_pred             ---hcCccceeeccCCc-CCc--ccccc-cCCCCccEEEeeCCc
Q 036960           80 ---LPSYPEKVDTFMLE-SLS--KLFRI-ITTRKLTYFIFTKCL  116 (176)
Q Consensus        80 ---~~~L~~~L~l~~~~-~L~--~l~~~-~~~~~l~~l~~~~c~  116 (176)
                         ..+| ++|+++++. .+.  .+... ....+++.+.+.+|.
T Consensus       180 ~~~~~~L-~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~  222 (594)
T 2p1m_B          180 PDTYTSL-VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV  222 (594)
T ss_dssp             CTTCCCC-CEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred             hhcCCcC-cEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence               1256 777776653 110  01000 123566777777663

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.30  E-value=0.0001  Score=62.69  Aligned_cols=100  Identities=20%  Similarity=0.222  Sum_probs=66.8

Q ss_pred             CCCCCcEEeccCC-CCcc--ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCCCch---
Q 036960            9 CLSLLKELNLCVN-DFQR--LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQSLPK---   77 (176)
Q Consensus         9 ~l~~L~~L~L~~n-~l~~--lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~lP~---   77 (176)
                      .+++|++|++++| .++.  ++..+..+++|++|++++|.++.     ++....  .+++|+.|++++ +. ..++.   
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~~~L~~L~l~~-~~-~~~~~~~l  203 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD--TYTSLVSLNISC-LA-SEVSFSAL  203 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT--TCCCCCEEECTT-CC-SCCCHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh--cCCcCcEEEecc-cC-CcCCHHHH
Confidence            5789999999999 6666  66666689999999999998663     333344  677999999998 44 33321   


Q ss_pred             -hh---hcCccceeeccCCcCCccccccc-CCCCccEEEee
Q 036960           78 -LL---LPSYPEKVDTFMLESLSKLFRII-TTRKLTYFIFT  113 (176)
Q Consensus        78 -~l---~~~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~  113 (176)
                       .+   .++| ++|++.+|..+..++... ....++.+.+.
T Consensus       204 ~~l~~~~~~L-~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          204 ERLVTRCPNL-KSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             HHHHHHCTTC-CEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             HHHHHhCCCC-cEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence             11   1478 899998875554443222 23455666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.95  E-value=0.00099  Score=46.35  Aligned_cols=44  Identities=23%  Similarity=0.268  Sum_probs=36.3

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCc
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLD   47 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~   47 (176)
                      ++|..+  -.+|++|+|++|+|+.+|. .|..+++|++|+|++|.+.
T Consensus        24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            455443  2379999999999999987 5788999999999999775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.83  E-value=0.00079  Score=54.86  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=17.4

Q ss_pred             cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeecc
Q 036960           29 SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELR   67 (176)
Q Consensus        29 ~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~   67 (176)
                      .+..+.+|+.+.+..+ ++.+++. |.  ++.+|+.+++.
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~--~c~~L~~i~lp  328 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFE--SCTSLVSIDLP  328 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTT--TCTTCCEECCC
T ss_pred             cccccccccccccccc-cceechhhhc--CCCCCCEEEeC
Confidence            3444555555555432 4444332 44  55555555553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.71  E-value=0.003  Score=52.00  Aligned_cols=96  Identities=9%  Similarity=0.104  Sum_probs=60.6

Q ss_pred             CCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCc-----ccCc-ccccccCCccceeeccccCCCCCCchhhhc--
Q 036960           11 SLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLD-----NLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP--   81 (176)
Q Consensus        11 ~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~-----~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--   81 (176)
                      .+|+.+.+ .+.++.++. .|.++++|+.+++.+|.+.     .++. .|.  ++++|+.+.+.+  .++.++...+.  
T Consensus       248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~--~c~~L~~l~l~~--~i~~I~~~aF~~c  322 (401)
T 4fdw_A          248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE--GCPKLARFEIPE--SIRILGQGLLGGN  322 (401)
T ss_dssp             CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT--TCTTCCEECCCT--TCCEECTTTTTTC
T ss_pred             CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh--CCccCCeEEeCC--ceEEEhhhhhcCC
Confidence            67888888 456777755 7888888888888887765     5654 477  888888888875  37777765553  


Q ss_pred             -CccceeeccCCcCCccccccc-CCCCccEEEeeC
Q 036960           82 -SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTK  114 (176)
Q Consensus        82 -~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~  114 (176)
                       +| +.+.+.+  +++.+.... ....++.+.+.+
T Consensus       323 ~~L-~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~  354 (401)
T 4fdw_A          323 RKV-TQLTIPA--NVTQINFSAFNNTGIKEVKVEG  354 (401)
T ss_dssp             CSC-CEEEECT--TCCEECTTSSSSSCCCEEEECC
T ss_pred             CCc-cEEEECc--cccEEcHHhCCCCCCCEEEEcC
Confidence             45 5555532  244442211 222555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.58  E-value=0.0037  Score=50.38  Aligned_cols=69  Identities=19%  Similarity=0.307  Sum_probs=44.0

Q ss_pred             ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh
Q 036960            7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      +.+...|+.+.+..+ ++.+.. .+.++.+|+.+.+.. .++.++.. |.  ++.+|+.+.+.+ +.++.+++..+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~--~c~~L~~i~l~~-~~i~~I~~~aF  306 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCS--GCSNLTKVVMDN-SAIETLEPRVF  306 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTT--TCTTCCEEEECC-TTCCEECTTTT
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccc--cccccccccccc-cccceehhhhh
Confidence            445667777777654 555544 566677777777754 35666543 56  777777777776 66776665544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.52  E-value=0.0038  Score=50.27  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=15.1

Q ss_pred             ccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeec
Q 036960           30 IGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLEL   66 (176)
Q Consensus        30 ~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l   66 (176)
                      |.++.+|+.+.+.++.++.+++. |.  ++.+|+.+.+
T Consensus       282 F~~c~~L~~i~l~~~~i~~I~~~aF~--~c~~L~~i~l  317 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIETLEPRVFM--DCVKLSSVTL  317 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTTTT--TCTTCCEEEC
T ss_pred             cccccccccccccccccceehhhhhc--CCCCCCEEEc
Confidence            34444444444444444444332 33  4444444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.37  E-value=0.0011  Score=54.07  Aligned_cols=80  Identities=18%  Similarity=0.233  Sum_probs=54.5

Q ss_pred             CCCCCcEEeccC--CC------Cccccccc--cCCCCCcEEEeeCCCCcc-cCccc---ccccCCccceeeccccCCCCC
Q 036960            9 CLSLLKELNLCV--ND------FQRLPASI--GSLSSLKRMNLVENKLDN-LPITI---SIKQISPLRTLELRNCNTLQS   74 (176)
Q Consensus         9 ~l~~L~~L~L~~--n~------l~~lp~~~--~~l~~L~~L~l~~n~l~~-lP~~~---~~~~l~~L~~L~l~~cn~l~~   74 (176)
                      .+++|+.|+|+.  |.      +..+...+  ..+++|++|++.+|.+.. .+..+   .  .+++|++|+++. |.++.
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~--~~~~L~~LdLs~-n~L~d  293 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD--ILPQLETMDISA-GVLTD  293 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS--SGGGCSEEECCS-SCCBH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc--cCCCCCEEECCC-CCCCh
Confidence            689999999863  11      22232223  357899999999999872 32222   3  578999999998 88865


Q ss_pred             -----Cchhhh--cCccceeeccCC
Q 036960           75 -----LPKLLL--PSYPEKVDTFML   92 (176)
Q Consensus        75 -----lP~~l~--~~L~~~L~l~~~   92 (176)
                           ++..+.  .+| +.|+++++
T Consensus       294 ~G~~~L~~~L~~l~~L-~~L~L~~n  317 (362)
T 2ra8_A          294 EGARLLLDHVDKIKHL-KFINMKYN  317 (362)
T ss_dssp             HHHHHHHTTHHHHTTC-SEEECCSB
T ss_pred             HHHHHHHhhcccCCcc-eEEECCCC
Confidence                 343322  378 88998776

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.32  E-value=0.0061  Score=49.52  Aligned_cols=68  Identities=7%  Similarity=0.223  Sum_probs=46.4

Q ss_pred             ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh
Q 036960            7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL   80 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~   80 (176)
                      |.++..|+.+.+.++. +.+.. .+.++..|+.+.+. +.++.++.. |.  ++.+|+.+.+.. + ++.+.+..+
T Consensus       261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~--~c~~L~~i~lp~-~-v~~I~~~aF  330 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFA--GCISLKSIDIPE-G-ITQILDDAF  330 (394)
T ss_dssp             TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTT--TCTTCCEEECCT-T-CCEECTTTT
T ss_pred             eeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeec--CCCCcCEEEeCC-c-ccEehHhHh
Confidence            5567778888876543 33433 67778888888885 557777664 67  788888888865 3 666665444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.06  E-value=0.011  Score=47.94  Aligned_cols=46  Identities=13%  Similarity=0.290  Sum_probs=21.5

Q ss_pred             cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhh
Q 036960           29 SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus        29 ~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      .|.++.+|+.+.+..+. ..++. .|.  ++.+|+.+.+.  +.++.+++..
T Consensus       260 aF~~c~~L~~i~lp~~~-~~I~~~aF~--~c~~L~~i~l~--~~i~~I~~~a  306 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSV-VSIGTGAFM--NCPALQDIEFS--SRITELPESV  306 (394)
T ss_dssp             TTTTCSSCCEEECCTTC-CEECTTTTT--TCTTCCEEECC--TTCCEECTTT
T ss_pred             eeeecccccEEeccccc-ceecCcccc--cccccccccCC--CcccccCcee
Confidence            34555556666554332 22332 244  55556555553  2344444433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.01  E-value=0.0045  Score=50.38  Aligned_cols=104  Identities=17%  Similarity=0.248  Sum_probs=64.8

Q ss_pred             CCCCcEEeccCCCCcc-ccccc--cCCCCCcEEEeeCC--C------CcccCcccccccCCccceeeccccCCCCC-Cch
Q 036960           10 LSLLKELNLCVNDFQR-LPASI--GSLSSLKRMNLVEN--K------LDNLPITISIKQISPLRTLELRNCNTLQS-LPK   77 (176)
Q Consensus        10 l~~L~~L~L~~n~l~~-lp~~~--~~l~~L~~L~l~~n--~------l~~lP~~~~~~~l~~L~~L~l~~cn~l~~-lP~   77 (176)
                      +++|+.|++..+.++. ....+  ..+++|+.|+|+.+  .      +..+...+....+++|+.|++.+ +.++. .+.
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~-~~i~~~~~~  270 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD-AEEQNVVVE  270 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES-CTTHHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC-CCCchHHHH
Confidence            7899999999988765 21233  37899999999632  1      22222222101578999999999 66642 222


Q ss_pred             hh-----hcCccceeeccCCcCCcc-----cccc-cCCCCccEEEeeCCc
Q 036960           78 LL-----LPSYPEKVDTFMLESLSK-----LFRI-ITTRKLTYFIFTKCL  116 (176)
Q Consensus        78 ~l-----~~~L~~~L~l~~~~~L~~-----l~~~-~~~~~l~~l~~~~c~  116 (176)
                      .+     .++| ++|+++.+ .+..     +... .....++.++++.|.
T Consensus       271 ~la~a~~~~~L-~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          271 MFLESDILPQL-ETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHHCSSGGGC-SEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHhCccCCCC-CEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            22     2378 99999654 4554     2111 134678888887763

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.15  E-value=0.059  Score=43.61  Aligned_cols=96  Identities=15%  Similarity=0.142  Sum_probs=68.2

Q ss_pred             ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhcCcc
Q 036960            7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLPSYP   84 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~   84 (176)
                      +..+.+|+.+.+.++ ++.++. .|.++.+|+.+++.. .++.++. .|.  ++.+|+.+.+.. + ++.++...+    
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~--~c~~L~~i~lp~-~-l~~I~~~aF----  362 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFR--GCTSLSNINFPL-S-LRKIGANAF----  362 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT--TCTTCCEECCCT-T-CCEECTTTB----
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhcc--CCCCCCEEEECc-c-ccEehHHHh----
Confidence            567889999998765 777766 688999999999975 4888865 488  999999999977 5 777776555    


Q ss_pred             ceeeccCCcCCccc--ccccCCCCccEEEeeCCcCccc
Q 036960           85 EKVDTFMLESLSKL--FRIITTRKLTYFIFTKCLKLNK  120 (176)
Q Consensus        85 ~~L~l~~~~~L~~l--~~~~~~~~l~~l~~~~c~~l~~  120 (176)
                           .+|.+|+.+  |+..  ... ...|.+|.+|+.
T Consensus       363 -----~~C~~L~~i~lp~~~--~~~-~~~F~~c~~L~~  392 (394)
T 4fs7_A          363 -----QGCINLKKVELPKRL--EQY-RYDFEDTTKFKW  392 (394)
T ss_dssp             -----TTCTTCCEEEEEGGG--GGG-GGGBCTTCEEEE
T ss_pred             -----hCCCCCCEEEECCCC--EEh-hheecCCCCCcE
Confidence                 355566554  1111  111 125778877754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.57  E-value=0.044  Score=40.82  Aligned_cols=81  Identities=19%  Similarity=0.160  Sum_probs=56.8

Q ss_pred             cCCCCCcEEeccCC-CCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCCC-
Q 036960            8 GCLSLLKELNLCVN-DFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQSL-   75 (176)
Q Consensus         8 ~~l~~L~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~l-   75 (176)
                      ..-+.|++|+|++| .|..     +-+.+..-+.|+.|+|++|+|..     |-+.+.  .-+.|+.|+|+. |.++.- 
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~--~N~tL~~L~L~~-N~Ig~~G  114 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE--TSPSLRVLNVES-NFLTPEL  114 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH--HCSSCCEEECCS-SBCCHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh--cCCccCeEecCC-CcCCHHH
Confidence            34467999999986 7764     44567777899999999999883     233344  457899999999 998631 


Q ss_pred             ----chhhh--cCccceeeccCC
Q 036960           76 ----PKLLL--PSYPEKVDTFML   92 (176)
Q Consensus        76 ----P~~l~--~~L~~~L~l~~~   92 (176)
                          -+.+.  ..| ++|+++++
T Consensus       115 a~ala~aL~~N~tL-~~L~L~n~  136 (197)
T 1pgv_A          115 LARLLRSTLVTQSI-VEFKADNQ  136 (197)
T ss_dssp             HHHHHHHTTTTCCC-SEEECCCC
T ss_pred             HHHHHHHHhhCCce-eEEECCCC
Confidence                11121  267 78888654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.83  E-value=0.11  Score=38.72  Aligned_cols=60  Identities=17%  Similarity=0.143  Sum_probs=45.3

Q ss_pred             ccCCCCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccc
Q 036960            7 IGCLSLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRN   68 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~   68 (176)
                      +..=+.|+.|+|++|.|..     +-+.+..-+.|++|+|++|.|..     +-+.+.  .-+.|+.|++++
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~--~N~tL~~L~L~n  135 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL--VTQSIVEFKADN  135 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT--TTCCCSEEECCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHh--hCCceeEEECCC
Confidence            3445689999999999986     33345566889999999999883     233444  456799999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	176
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 9   CLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
               L+ELN+  N    LPA    L  L       N L  +P     +    L+ L +  
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVP-----ELPQNLKQLHVEY 333

Query: 69  CNTLQSLPKLL 79
              L+  P + 
Sbjct: 334 NP-LREFPDIP 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 10/65 (15%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 4   LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
           +  +  L+ L+ L    N    +  S+ +L+++  ++   N++ +L     +  ++ +  
Sbjct: 322 ISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDL---TPLANLTRITQ 377

Query: 64  LELRN 68
           L L +
Sbjct: 378 LGLND 382

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.24
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.22
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.12
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.06
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.04
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.03
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.0
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.99
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.96
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.93
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.92
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.85
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.77
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.62
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.54
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.2
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.17
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.51
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.29
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.38
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.71
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.22
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.3

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.7e-12  Score=93.35  Aligned_cols=106  Identities=18%  Similarity=0.197  Sum_probs=87.8

Q ss_pred             ccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh---c
Q 036960            5 QDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL---P   81 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~---~   81 (176)
                      +.+.+..++++|+|++|+|+.+|..+..+++|+.|++++|+|+.++ .+.  .+++|++|++++ |.++.+|..+.   +
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~--~l~~L~~L~ls~-N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFP--LLRRLKTLLVNN-NRICRIGEGLDQALP   87 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCC--CCSSCCEEECCS-SCCCEECSCHHHHCT
T ss_pred             HhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-Ccc--cCcchhhhhccc-ccccCCCcccccccc
Confidence            3466788999999999999999877788999999999999999995 588  999999999999 99999987654   3


Q ss_pred             CccceeeccCCcCCccccc---ccCCCCccEEEeeCCc
Q 036960           82 SYPEKVDTFMLESLSKLFR---IITTRKLTYFIFTKCL  116 (176)
Q Consensus        82 ~L~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c~  116 (176)
                      ++ ++|+++++ .+..+++   ......++.+.+.++.
T Consensus        88 ~L-~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          88 DL-TELILTNN-SLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             TC-CEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             cc-ccceeccc-cccccccccccccccccchhhcCCCc
Confidence            78 99999876 4555543   2345678889988875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=4.3e-12  Score=87.28  Aligned_cols=66  Identities=29%  Similarity=0.471  Sum_probs=31.2

Q ss_pred             ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960            7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      +..+++|++|++++|.|+.+|+.++.+++|++|++++|+|+.+| .+.  .+++|+.|++++ |+++.+|
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~--~l~~L~~L~l~~-N~i~~~~   81 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVA--NLPRLQELLLCN-NRLQQSA   81 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGT--TCSSCCEEECCS-SCCCSSS
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccc--cccccCeEECCC-CccCCCC
Confidence            44444444444444444444444444444444444444444443 244  444444444444 4444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=2.3e-12  Score=88.72  Aligned_cols=95  Identities=17%  Similarity=0.259  Sum_probs=79.5

Q ss_pred             cEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--CccceeeccC
Q 036960           14 KELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SYPEKVDTFM   91 (176)
Q Consensus        14 ~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L~~~L~l~~   91 (176)
                      |+|++++|+|+.++ .++.+++|++|++++|+|+.+|+.++  .+++|+.|++++ |.++.+| ++..  +| +++++++
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~--~l~~L~~L~l~~-N~i~~l~-~~~~l~~L-~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALA--ALRCLEVLQASD-NALENVD-GVANLPRL-QELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGG--GCTTCCEEECCS-SCCCCCG-GGTTCSSC-CEEECCS
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhh--hhhccccccccc-ccccccC-cccccccc-CeEECCC
Confidence            58999999999997 59999999999999999999999899  999999999999 9999998 4554  78 9999987


Q ss_pred             CcCCccccc---ccCCCCccEEEeeCC
Q 036960           92 LESLSKLFR---IITTRKLTYFIFTKC  115 (176)
Q Consensus        92 ~~~L~~l~~---~~~~~~l~~l~~~~c  115 (176)
                      + .+..++.   ......++.+++++.
T Consensus        75 N-~i~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          75 N-RLQQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             S-CCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             C-ccCCCCCchhhcCCCCCCEEECCCC
Confidence            5 4555533   234457788888664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7e-12  Score=89.47  Aligned_cols=77  Identities=22%  Similarity=0.268  Sum_probs=61.9

Q ss_pred             ccCccccCCCCCcEEeccCC-CCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchh
Q 036960            2 EILQDIGCLSLLKELNLCVN-DFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKL   78 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n-~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~   78 (176)
                      ++|..+..+++|++|++++| .|+.++. .|.++++|+.|++++|+|+.++. .|.  .+++|++|++++ |+++.+|.+
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~--~l~~L~~L~Ls~-N~l~~l~~~   98 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH--FTPRLSRLNLSF-NALESLSWK   98 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG--SCSCCCEEECCS-SCCSCCCST
T ss_pred             cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccc--ccccccceeccC-CCCcccChh
Confidence            45777778888888888766 5888765 68888889999999999888854 477  888999999998 888888876


Q ss_pred             hhc
Q 036960           79 LLP   81 (176)
Q Consensus        79 l~~   81 (176)
                      +..
T Consensus        99 ~~~  101 (156)
T d2ifga3          99 TVQ  101 (156)
T ss_dssp             TTC
T ss_pred             hhc
Confidence            553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.24  E-value=1.6e-11  Score=89.98  Aligned_cols=108  Identities=20%  Similarity=0.263  Sum_probs=87.2

Q ss_pred             ccCccccCCCCCcEEeccCCCCcc-cc-ccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQR-LP-ASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKL   78 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~-lp-~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~   78 (176)
                      +||..+.  +++++|+|++|.|+. ++ ..|+.+++|+.|++++|.+..++. .+.  .+++|+.|++++ |+++.+|+.
T Consensus        22 ~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~--~~~~L~~L~Ls~-N~l~~l~~~   96 (192)
T d1w8aa_          22 EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE--GASHIQELQLGE-NKIKEISNK   96 (192)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCS-CCCCEECSS
T ss_pred             ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccc--cccccceeeecc-ccccccCHH
Confidence            4677663  689999999999986 43 367999999999999999997754 578  899999999999 999999877


Q ss_pred             hhc---CccceeeccCCcCCccccccc--CCCCccEEEeeCCc
Q 036960           79 LLP---SYPEKVDTFMLESLSKLFRII--TTRKLTYFIFTKCL  116 (176)
Q Consensus        79 l~~---~L~~~L~l~~~~~L~~l~~~~--~~~~l~~l~~~~c~  116 (176)
                      .+.   +| ++|+++++ .++.++...  ...+++.+.+.+..
T Consensus        97 ~F~~l~~L-~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          97 MFLGLHQL-KTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SSTTCTTC-CEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             HHhCCCcc-cccccCCc-cccccCHHHhcCCcccccccccccc
Confidence            654   67 89999876 688875543  45678888887654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=1.2e-11  Score=90.63  Aligned_cols=84  Identities=20%  Similarity=0.250  Sum_probs=71.9

Q ss_pred             ccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhc-
Q 036960            5 QDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLP-   81 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-   81 (176)
                      ..|.++++|++|++++|.+..++ ..+..+++|++|++++|+|+.+|.. |.  ++++|+.|+|++ |.++.+|++.+. 
T Consensus        48 ~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~--~l~~L~~L~L~~-N~l~~i~~~~f~~  124 (192)
T d1w8aa_          48 GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL--GLHQLKTLNLYD-NQISCVMPGSFEH  124 (192)
T ss_dssp             CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST--TCTTCCEEECCS-SCCCEECTTSSTT
T ss_pred             cccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHh--CCCcccccccCC-ccccccCHHHhcC
Confidence            45688999999999999999965 4789999999999999999999764 88  999999999999 999999877654 


Q ss_pred             --CccceeeccCC
Q 036960           82 --SYPEKVDTFML   92 (176)
Q Consensus        82 --~L~~~L~l~~~   92 (176)
                        +| +++++++.
T Consensus       125 l~~L-~~l~L~~N  136 (192)
T d1w8aa_         125 LNSL-TSLNLASN  136 (192)
T ss_dssp             CTTC-CEEECTTC
T ss_pred             Cccc-cccccccc
Confidence              55 66666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.8e-11  Score=84.38  Aligned_cols=87  Identities=20%  Similarity=0.176  Sum_probs=73.5

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCch--h
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPK--L   78 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~--~   78 (176)
                      .||..+..+++|+.|++++|.|+.++ .+..+++|++|++++|+++.+|.. +.  .+++|+.|++++ |+++.+++  .
T Consensus        32 ~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~--~l~~L~~L~L~~-N~i~~~~~l~~  107 (162)
T d1a9na_          32 VIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTN-NSLVELGDLDP  107 (162)
T ss_dssp             SCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHH--HCTTCCEEECCS-CCCCCGGGGGG
T ss_pred             ccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccc--cccccccceecc-ccccccccccc
Confidence            35655677999999999999999995 689999999999999999999876 46  799999999999 99998874  2


Q ss_pred             hh--cCccceeeccCCc
Q 036960           79 LL--PSYPEKVDTFMLE   93 (176)
Q Consensus        79 l~--~~L~~~L~l~~~~   93 (176)
                      +.  ++| +++++.+++
T Consensus       108 l~~l~~L-~~L~l~~N~  123 (162)
T d1a9na_         108 LASLKSL-TYLCILRNP  123 (162)
T ss_dssp             GGGCTTC-CEEECCSSG
T ss_pred             ccccccc-chhhcCCCc
Confidence            22  267 888888763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5e-10  Score=85.59  Aligned_cols=69  Identities=28%  Similarity=0.354  Sum_probs=37.5

Q ss_pred             cCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCch
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPK   77 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~   77 (176)
                      ||+.+.  +++++|+|++|+|+++|. .|..+++|++|++++|+|+.+|. ++  .+++|+.|++++ |+++.+|.
T Consensus        25 iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~--~l~~L~~L~Ls~-N~l~~~~~   94 (266)
T d1p9ag_          25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DG--TLPVLGTLDLSH-NQLQSLPL   94 (266)
T ss_dssp             CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CS--CCTTCCEEECCS-SCCSSCCC
T ss_pred             eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cc--cccccccccccc-cccccccc
Confidence            444432  345666666666666543 45556666666666666655542 34  455555555555 55554443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.04  E-value=2.7e-10  Score=88.70  Aligned_cols=88  Identities=23%  Similarity=0.300  Sum_probs=67.2

Q ss_pred             ccCccccCCCCCcEEeccC-CCCcc-ccccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCC-CCCch
Q 036960            2 EILQDIGCLSLLKELNLCV-NDFQR-LPASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTL-QSLPK   77 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~-n~l~~-lp~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l-~~lP~   77 (176)
                      +||++++++++|++|+|++ |++++ +|.+++++++|++|++++|++..+ |..+.  .+.+|+.+++++ |.+ ..+|.
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~--~~~~L~~l~l~~-N~~~~~~p~  143 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSY-NALSGTLPP  143 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCS-SEEESCCCG
T ss_pred             CCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccccc--chhhhccccccc-ccccccCch
Confidence            4788888899999999886 67774 888888899999999999888855 44467  788888888888 544 56676


Q ss_pred             hhhc--CccceeeccCCc
Q 036960           78 LLLP--SYPEKVDTFMLE   93 (176)
Q Consensus        78 ~l~~--~L~~~L~l~~~~   93 (176)
                      .+..  .+ +.++++++.
T Consensus       144 ~l~~l~~L-~~l~l~~n~  160 (313)
T d1ogqa_         144 SISSLPNL-VGITFDGNR  160 (313)
T ss_dssp             GGGGCTTC-CEEECCSSC
T ss_pred             hhccCccc-ceeeccccc
Confidence            6654  56 777776653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.03  E-value=3.2e-12  Score=94.62  Aligned_cols=107  Identities=15%  Similarity=0.180  Sum_probs=87.3

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP-   81 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-   81 (176)
                      +|.++..+++|++|++++|+|+.++ .+..+++|++|++++|+|+.+|..+.  .+++|+.|++++ |.++.++ .+.. 
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~--~~~~L~~L~l~~-N~i~~l~-~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDA--VADTLEELWISY-NQIASLS-GIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHH--HHHHCCEEECSE-EECCCHH-HHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccc--cccccccccccc-ccccccc-ccccc
Confidence            4567888999999999999999996 69999999999999999999987666  678899999999 9999886 3443 


Q ss_pred             -CccceeeccCCcCCccccc---ccCCCCccEEEeeCCc
Q 036960           82 -SYPEKVDTFMLESLSKLFR---IITTRKLTYFIFTKCL  116 (176)
Q Consensus        82 -~L~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c~  116 (176)
                       +| ++|+++++ .+..+++   .....+++.+.++++.
T Consensus       115 ~~L-~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         115 VNL-RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHS-SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccc-cccccccc-hhccccccccccCCCccceeecCCCc
Confidence             78 99999875 4555532   2355678899888764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.00  E-value=5.7e-10  Score=86.43  Aligned_cols=102  Identities=22%  Similarity=0.180  Sum_probs=74.5

Q ss_pred             CCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc--Cccc
Q 036960           10 LSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP--SYPE   85 (176)
Q Consensus        10 l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L~~   85 (176)
                      +++|+.|++++|.++. .+..+..++.++.|++++|.++.++. .+.  ++++|++|++++ |.++.+|.++..  +| +
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~--~l~~L~~L~L~~-N~L~~lp~~l~~l~~L-~  245 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA--NTPHLRELHLNN-NKLVKVPGGLADHKYI-Q  245 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG--GSTTCCEEECCS-SCCSSCCTTTTTCSSC-C
T ss_pred             CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccc--ccccceeeeccc-ccccccccccccccCC-C
Confidence            5678888888887776 45578888888888888888887744 467  888888888888 888888876664  77 8


Q ss_pred             eeeccCCcCCccccccc--------CCCCccEEEeeCCc
Q 036960           86 KVDTFMLESLSKLFRII--------TTRKLTYFIFTKCL  116 (176)
Q Consensus        86 ~L~l~~~~~L~~l~~~~--------~~~~l~~l~~~~c~  116 (176)
                      +|+++++ +++.++...        ....++.+.+.+..
T Consensus       246 ~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         246 VVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             EEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             EEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            8888775 576663321        23456677776543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.9e-09  Score=82.34  Aligned_cols=103  Identities=27%  Similarity=0.347  Sum_probs=60.7

Q ss_pred             cCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCC------------------------CCcccCcc-cccccCCccc
Q 036960            8 GCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVEN------------------------KLDNLPIT-ISIKQISPLR   62 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n------------------------~l~~lP~~-~~~~~l~~L~   62 (176)
                      +.+++|++|++++|+++..|..+..+++|++|++++|                        .++.+|.. +.  .+++|+
T Consensus        74 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~--~l~~l~  151 (266)
T d1p9ag_          74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT--PTPKLE  151 (266)
T ss_dssp             SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceecccccc--ccccch
Confidence            4556666666666666655555555555555555554                        44444433 34  566777


Q ss_pred             eeeccccCCCCCCchhhhc---CccceeeccCCcCCccccccc-CCCCccEEEeeCC
Q 036960           63 TLELRNCNTLQSLPKLLLP---SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKC  115 (176)
Q Consensus        63 ~L~l~~cn~l~~lP~~l~~---~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c  115 (176)
                      .+++++ |+++.+|.+...   +| ++|+++++ .++.+|+.. ....++.+.+++.
T Consensus       152 ~l~l~~-N~l~~~~~~~~~~l~~L-~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         152 KLSLAN-NNLTELPAGLLNGLENL-DTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             EEECTT-SCCSCCCTTTTTTCTTC-CEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred             hccccc-ccccccCcccccccccc-ceeecccC-CCcccChhHCCCCCCCEEEecCC
Confidence            777777 777766654332   56 77777765 466675433 3456677766653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=1.9e-09  Score=78.97  Aligned_cols=62  Identities=16%  Similarity=0.338  Sum_probs=28.8

Q ss_pred             CCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960           10 LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus        10 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      +.++++|++++|.++.++ .+..+++|++|++++|+++.++. +.  ++++|+.|++++ |.+..+|
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~--~l~~L~~L~l~~-n~~~~~~  100 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LK--NLTKLVDILMNN-NQIADIT  100 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCS-SCCCCCG
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-cc--CCcccccccccc-ccccccc
Confidence            344444555444444442 34444445555555544444432 44  444444444444 4444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=2.6e-09  Score=78.94  Aligned_cols=65  Identities=25%  Similarity=0.411  Sum_probs=36.4

Q ss_pred             ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960            7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      +..+++|++|++++|+|++++ .++.+++|++|++++|+|+.+| .+.  ++++|+.|++++ +.+..++
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~--~l~~L~~L~l~~-~~~~~~~  128 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLK--DLKKLKSLSLEH-NGISDIN  128 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGT--TCTTCCEEECTT-SCCCCCG
T ss_pred             HhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-ccc--cccccccccccc-ccccccc
Confidence            445555666666666665554 3455556666666666655554 344  555566666555 5554444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.96  E-value=9.3e-10  Score=85.19  Aligned_cols=84  Identities=20%  Similarity=0.350  Sum_probs=72.0

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLL   79 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l   79 (176)
                      ++|..+.  +++++|++++|+|+.+|+ +|.++++|++|++++|.+..+ |..|.  ++++|+.|++++ |+++.+|...
T Consensus        24 ~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~--~l~~L~~L~l~~-n~l~~l~~~~   98 (305)
T d1xkua_          24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA--PLVKLERLYLSK-NQLKELPEKM   98 (305)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCS-SCCSBCCSSC
T ss_pred             ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhh--CCCccCEecccC-CccCcCccch
Confidence            4677663  689999999999999987 699999999999999999988 55688  999999999999 9999999877


Q ss_pred             hcCccceeeccC
Q 036960           80 LPSYPEKVDTFM   91 (176)
Q Consensus        80 ~~~L~~~L~l~~   91 (176)
                      ...+ ..|+..+
T Consensus        99 ~~~l-~~L~~~~  109 (305)
T d1xkua_          99 PKTL-QELRVHE  109 (305)
T ss_dssp             CTTC-CEEECCS
T ss_pred             hhhh-hhhhccc
Confidence            6666 6666544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.93  E-value=5.6e-09  Score=76.38  Aligned_cols=102  Identities=16%  Similarity=0.292  Sum_probs=76.8

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh--cCc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL--PSY   83 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~--~~L   83 (176)
                      .+..+++|++|++++|++++++. ++.+++|++|++++|.+..+|. +.  +++.|+.|++++ +....++ .+.  .+|
T Consensus        57 ~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~--~l~~L~~L~l~~-~~~~~~~-~~~~l~~L  130 (199)
T d2omxa2          57 GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LA--NLTNLTGLTLFN-NQITDID-PLKNLTNL  130 (199)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GT--TCTTCSEEECCS-SCCCCCG-GGTTCTTC
T ss_pred             ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-cc--cccccccccccc-ccccccc-ccchhhhh
Confidence            46778999999999999999874 8999999999999999888863 77  788888888888 6666655 232  267


Q ss_pred             cceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960           84 PEKVDTFMLESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                       +.++++++ .+..++.......++.+.+.++
T Consensus       131 -~~L~l~~n-~l~~~~~l~~~~~L~~L~l~~n  160 (199)
T d2omxa2         131 -NRLELSSN-TISDISALSGLTSLQQLNFSSN  160 (199)
T ss_dssp             -SEEECCSS-CCCCCGGGTTCTTCSEEECCSS
T ss_pred             -HHhhhhhh-hhcccccccccccccccccccc
Confidence             77887765 3555544445566777776654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.92  E-value=2.7e-09  Score=82.92  Aligned_cols=92  Identities=25%  Similarity=0.232  Sum_probs=67.5

Q ss_pred             CCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccceeeccC
Q 036960           12 LLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFM   91 (176)
Q Consensus        12 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~~L~l~~   91 (176)
                      ++++|+|+++.++.+|+.   .++|++|++++|+|+.+|..++     +|+.|++++ |.++.++ .+++.| ++|++++
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~~-----~L~~L~l~~-n~l~~l~-~lp~~L-~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELPQ-----SLKSLLVDN-NNLKALS-DLPPLL-EYLGVSN  107 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCCT-----TCCEEECCS-SCCSCCC-SCCTTC-CEEECCS
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccchh-----hhhhhhhhh-cccchhh-hhcccc-ccccccc
Confidence            578888888888888853   4578888888888888886444     677778888 8887777 455677 8888876


Q ss_pred             CcCCcccccccCCCCccEEEeeCC
Q 036960           92 LESLSKLFRIITTRKLTYFIFTKC  115 (176)
Q Consensus        92 ~~~L~~l~~~~~~~~l~~l~~~~c  115 (176)
                      + .+..++.......++.+++.++
T Consensus       108 n-~l~~lp~~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_         108 N-QLEKLPELQNSSFLKIIDVDNN  130 (353)
T ss_dssp             S-CCSSCCCCTTCTTCCEEECCSS
T ss_pred             c-ccccccchhhhccceeeccccc
Confidence            5 5666765555566777766554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=5.8e-09  Score=73.88  Aligned_cols=104  Identities=12%  Similarity=0.131  Sum_probs=83.9

Q ss_pred             cCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCC-CcccCc-ccccccCCccceeeccccCCCCCCchhhhc---C
Q 036960            8 GCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENK-LDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP---S   82 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~-l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~---~   82 (176)
                      ........++.+++.+..+|..+..+++|++|++++|+ |+.++. .|.  ++++|+.|++++ |.|+.+++..+.   +
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVK-SGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCS-SCCCEECTTGGGSCSC
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhc--cccccCcceeec-cccCCccccccccccc
Confidence            34455677999999999999999999999999998775 999975 488  999999999999 999999876554   7


Q ss_pred             ccceeeccCCcCCccccccc-CCCCccEEEeeCCc
Q 036960           83 YPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCL  116 (176)
Q Consensus        83 L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~  116 (176)
                      | ++|++++. .++.++... ...++..+.+.+..
T Consensus        82 L-~~L~Ls~N-~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          82 L-SRLNLSFN-ALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             C-CEEECCSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             c-cceeccCC-CCcccChhhhccccccccccCCCc
Confidence            8 99999875 688875543 34567788776543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.90  E-value=6.4e-10  Score=86.51  Aligned_cols=72  Identities=21%  Similarity=0.303  Sum_probs=62.6

Q ss_pred             cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCC-CCch
Q 036960            3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQ-SLPK   77 (176)
Q Consensus         3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~-~lP~   77 (176)
                      +|..+..+++++.+++++|.++..+..++.+++|+.|++++|+++ .+|+.++  ++++|+.|++++ |+++ .+|.
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~--~L~~L~~L~Ls~-N~l~g~iP~  286 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT--QLKFLHSLNVSF-NNLCGEIPQ  286 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG--GCTTCCEEECCS-SEEEEECCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccCccCeecccCChHHh--CCCCCCEEECcC-CcccccCCC
Confidence            567778888999999999988886678888999999999999998 8899999  999999999999 8886 7884

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=8.1e-09  Score=79.18  Aligned_cols=85  Identities=25%  Similarity=0.294  Sum_probs=52.5

Q ss_pred             CccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc
Q 036960            4 LQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP   81 (176)
Q Consensus         4 P~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~   81 (176)
                      |..+.++++|++|++++|.+..++. .+....+|+.+++++|.|+.+|. .+.  .+++|+.|++++ |.++.+|...+.
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~--~~~~L~~L~l~~-N~l~~l~~~~f~  174 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR--DLGNLTHLFLHG-NRISSVPERAFR  174 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCEECTTTTT
T ss_pred             chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhc--cccchhhccccc-Ccccccchhhhc
Confidence            4456667777777777776666443 45566667777777777766654 355  666677777776 666666544432


Q ss_pred             ---CccceeeccCC
Q 036960           82 ---SYPEKVDTFML   92 (176)
Q Consensus        82 ---~L~~~L~l~~~   92 (176)
                         +| +++++.++
T Consensus       175 ~l~~L-~~l~l~~N  187 (284)
T d1ozna_         175 GLHSL-DRLLLHQN  187 (284)
T ss_dssp             TCTTC-CEEECCSS
T ss_pred             ccccc-chhhhhhc
Confidence               45 55555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=1.7e-08  Score=74.36  Aligned_cols=106  Identities=21%  Similarity=0.283  Sum_probs=84.4

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh--cCc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL--PSY   83 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~--~~L   83 (176)
                      .++.+++|++|++++|+++++| .+..+++|+.|++++|.+..++ .+.  .+++++.+++++ |.+..++. +.  .+|
T Consensus        85 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~~~-~l~--~l~~l~~l~~~~-n~l~~~~~-~~~l~~L  158 (210)
T d1h6ta2          85 PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDIN-GLV--HLPQLESLYLGN-NKITDITV-LSRLTKL  158 (210)
T ss_dssp             GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCG-GGG--GCTTCCEEECCS-SCCCCCGG-GGGCTTC
T ss_pred             ccccCccccccccccccccccc-cccccccccccccccccccccc-ccc--cccccccccccc-cccccccc-ccccccc
Confidence            4678999999999999999998 6899999999999999988775 477  888999999998 88877663 32  378


Q ss_pred             cceeeccCCcCCcccccccCCCCccEEEeeCCcCccc
Q 036960           84 PEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNK  120 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~~l~~  120 (176)
                       +++++.++ .+..+++.....+++.++++++ .+..
T Consensus       159 -~~l~l~~n-~l~~i~~l~~l~~L~~L~Ls~N-~i~~  192 (210)
T d1h6ta2         159 -DTLSLEDN-QISDIVPLAGLTKLQNLYLSKN-HISD  192 (210)
T ss_dssp             -SEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCB
T ss_pred             -cccccccc-cccccccccCCCCCCEEECCCC-CCCC
Confidence             88888776 5666755556677888888776 3443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=7.7e-09  Score=79.33  Aligned_cols=106  Identities=23%  Similarity=0.281  Sum_probs=82.3

Q ss_pred             ccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCch-hhh-
Q 036960            5 QDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPK-LLL-   80 (176)
Q Consensus         5 ~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~-~l~-   80 (176)
                      ..+....+|+.+++++|+|+.+|. .+..+++|+.|++++|+++.+|. .+.  ++++|+.+++++ |++..++. .+. 
T Consensus       123 ~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~--~l~~L~~l~l~~-N~l~~i~~~~f~~  199 (284)
T d1ozna_         123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLHQ-NRVAHVHPHAFRD  199 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCS-SCCCEECTTTTTT
T ss_pred             cccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhc--cccccchhhhhh-ccccccChhHhhh
Confidence            346678899999999999999865 67889999999999999998865 477  899999999999 88877653 333 


Q ss_pred             -cCccceeeccCCcCCccccc-cc-CCCCccEEEeeCC
Q 036960           81 -PSYPEKVDTFMLESLSKLFR-II-TTRKLTYFIFTKC  115 (176)
Q Consensus        81 -~~L~~~L~l~~~~~L~~l~~-~~-~~~~l~~l~~~~c  115 (176)
                       +++ ++|+++++ .+..++. .. ....++.+.+++.
T Consensus       200 l~~L-~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         200 LGRL-MTLYLFAN-NLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CTTC-CEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhhc-cccccccc-ccccccccccccccccCEEEecCC
Confidence             277 89999876 4555533 22 4566888887764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.80  E-value=7e-09  Score=80.49  Aligned_cols=59  Identities=25%  Similarity=0.285  Sum_probs=34.3

Q ss_pred             CCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccceeeccCCcCCccccc
Q 036960           33 LSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFR  100 (176)
Q Consensus        33 l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~~L~l~~~~~L~~l~~  100 (176)
                      +++|++|++++|+|+.+|.     .+++|+.|++++ |.++.+|+ ...+| ++|+++++. ++.+|+
T Consensus       283 ~~~L~~L~Ls~N~l~~lp~-----~~~~L~~L~L~~-N~L~~l~~-~~~~L-~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELPA-----LPPRLERLIASF-NHLAEVPE-LPQNL-KQLHVEYNP-LREFPD  341 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCS-SCCSCCCC-CCTTC-CEEECCSSC-CSSCCC
T ss_pred             CCCCCEEECCCCccCcccc-----ccCCCCEEECCC-CcCCcccc-ccCCC-CEEECcCCc-CCCCCc
Confidence            4556666666666666664     334566666666 66666663 33456 666666653 555543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.78  E-value=7.8e-09  Score=81.45  Aligned_cols=101  Identities=19%  Similarity=0.285  Sum_probs=76.5

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY   83 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L   83 (176)
                      .+..+..++.+++++|.++.++ .+..+++++.|++++|+++.++. +.  .+++|+.|++++ |.++.+| .+..  +|
T Consensus       280 ~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~-l~--~l~~L~~L~L~~-n~l~~l~-~l~~l~~L  353 (384)
T d2omza2         280 PLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP-VS--SLTKLQRLFFAN-NKVSDVS-SLANLTNI  353 (384)
T ss_dssp             GGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGG-GG--GCTTCCEEECCS-SCCCCCG-GGGGCTTC
T ss_pred             cccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCcc-cc--cCCCCCEEECCC-CCCCCCh-hHcCCCCC
Confidence            3566778888888888888765 57788888888888888887753 77  888888888888 7888877 4543  78


Q ss_pred             cceeeccCCcCCcccccccCCCCccEEEeeC
Q 036960           84 PEKVDTFMLESLSKLFRIITTRKLTYFIFTK  114 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~  114 (176)
                       ++|+++++ .++.+++.....+++.+++++
T Consensus       354 -~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         354 -NWLSAGHN-QISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             -CEEECCSS-CCCBCGGGTTCTTCSEEECCC
T ss_pred             -CEEECCCC-cCCCChhhccCCCCCEeeCCC
Confidence             88888765 577765545556777777654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.77  E-value=8.6e-09  Score=76.58  Aligned_cols=100  Identities=21%  Similarity=0.329  Sum_probs=72.0

Q ss_pred             ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh--cCcc
Q 036960            7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL--PSYP   84 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~--~~L~   84 (176)
                      +...+.++.+.++++.+...+ .+...++|++|++++|.+..++. +.  ++++|+.|++++ |+++.+|. +.  ++| 
T Consensus       125 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~-l~--~l~~L~~L~Ls~-n~l~~l~~-l~~l~~L-  197 (227)
T d1h6ua2         125 LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP-LA--NLSKLTTLKADD-NKISDISP-LASLPNL-  197 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCS-SCCCCCGG-GGGCTTC-
T ss_pred             hccccchhhhhchhhhhchhh-hhccccccccccccccccccchh-hc--ccccceecccCC-CccCCChh-hcCCCCC-
Confidence            456677788888887777654 46677788888888888776543 67  788888888888 78887773 43  377 


Q ss_pred             ceeeccCCcCCcccccccCCCCccEEEeeC
Q 036960           85 EKVDTFMLESLSKLFRIITTRKLTYFIFTK  114 (176)
Q Consensus        85 ~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~  114 (176)
                      ++|+++++ .++.+++.....+++.+++++
T Consensus       198 ~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         198 IEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             CEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence            88888876 577776555666777777653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.71  E-value=5e-08  Score=76.66  Aligned_cols=106  Identities=18%  Similarity=0.315  Sum_probs=86.7

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh--cCc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL--PSY   83 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~--~~L   83 (176)
                      .++.+++|++|+++++.+++++ .+..+..++.+.++.|.++.++ .+.  .+++++.|++++ |+++.++. +.  ++|
T Consensus       258 ~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~l~~l~~~~n~l~~~~-~~~--~~~~l~~L~ls~-n~l~~l~~-l~~l~~L  331 (384)
T d2omza2         258 PLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDIS-PIS--NLKNLTYLTLYF-NNISDISP-VSSLTKL  331 (384)
T ss_dssp             GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCSCCG-GGG--GCTTCSEEECCS-SCCSCCGG-GGGCTTC
T ss_pred             cccccccCCEeeccCcccCCCC-cccccccccccccccccccccc-ccc--hhcccCeEECCC-CCCCCCcc-cccCCCC
Confidence            3778899999999999999887 4888999999999999998765 467  789999999999 99998873 33  388


Q ss_pred             cceeeccCCcCCcccccccCCCCccEEEeeCCcCccc
Q 036960           84 PEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNK  120 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~~l~~  120 (176)
                       ++|+++++ .++.++......+++.++++++ ++..
T Consensus       332 -~~L~L~~n-~l~~l~~l~~l~~L~~L~l~~N-~l~~  365 (384)
T d2omza2         332 -QRLFFANN-KVSDVSSLANLTNINWLSAGHN-QISD  365 (384)
T ss_dssp             -CEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCB
T ss_pred             -CEEECCCC-CCCCChhHcCCCCCCEEECCCC-cCCC
Confidence             99999987 6777765556678899998765 3443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.70  E-value=6.8e-08  Score=71.56  Aligned_cols=107  Identities=17%  Similarity=0.266  Sum_probs=78.8

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh--cCc
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL--PSY   83 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~--~~L   83 (176)
                      .+..+++|++++++++....++ .+.....++.+.++++.+...+ .+.  ++++|+.|++++ |.+..++. +.  ++|
T Consensus       102 ~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~-~~~--~~~~L~~L~l~~-n~~~~~~~-l~~l~~L  175 (227)
T d1h6ua2         102 AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNIS-PLA--GLTNLQYLSIGN-AQVSDLTP-LANLSKL  175 (227)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGG--GCTTCCEEECCS-SCCCCCGG-GTTCTTC
T ss_pred             cccccccccccccccccccccc-hhccccchhhhhchhhhhchhh-hhc--cccccccccccc-cccccchh-hcccccc
Confidence            4677888888888888877764 4667788888888888877553 356  778888888888 77776663 43  377


Q ss_pred             cceeeccCCcCCcccccccCCCCccEEEeeCCcCcccc
Q 036960           84 PEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKS  121 (176)
Q Consensus        84 ~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~~l~~~  121 (176)
                       +.|+++++ .++.+++.....+++.+++++| ++...
T Consensus       176 -~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls~N-~lt~i  210 (227)
T d1h6ua2         176 -TTLKADDN-KISDISPLASLPNLIEVHLKNN-QISDV  210 (227)
T ss_dssp             -CEEECCSS-CCCCCGGGGGCTTCCEEECTTS-CCCBC
T ss_pred             -eecccCCC-ccCCChhhcCCCCCCEEECcCC-cCCCC
Confidence             88888776 6777766556677888888887 45543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=5.1e-08  Score=72.57  Aligned_cols=91  Identities=13%  Similarity=0.252  Sum_probs=67.9

Q ss_pred             ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcc-cCc-ccccccCCccceeeccccCCCCCCchh
Q 036960            2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDN-LPI-TISIKQISPLRTLELRNCNTLQSLPKL   78 (176)
Q Consensus         2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~-lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~   78 (176)
                      ++|+.+.  +++++|++++|.|+.+|. .|.++++|++|++++|.+.. +|. .|.  +++.++.+.+..||.+..++..
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~--~l~~l~~l~~~~~n~l~~~~~~   97 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPE   97 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE--SCTTCCEEEEECCTTCCEECTT
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccc--cccccccccccccccccccccc
Confidence            4666553  578999999999999887 58899999999999998774 544 477  8888888888776788776655


Q ss_pred             hhc---CccceeeccCCcCCccc
Q 036960           79 LLP---SYPEKVDTFMLESLSKL   98 (176)
Q Consensus        79 l~~---~L~~~L~l~~~~~L~~l   98 (176)
                      ...   +| +++++.++ .+...
T Consensus        98 ~~~~l~~L-~~l~l~~~-~l~~~  118 (242)
T d1xwdc1          98 AFQNLPNL-QYLLISNT-GIKHL  118 (242)
T ss_dssp             SEECCTTC-CEEEEESC-CCCSC
T ss_pred             cccccccc-cccccchh-hhccc
Confidence            432   67 77777664 34444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.56  E-value=5.6e-10  Score=82.27  Aligned_cols=83  Identities=18%  Similarity=0.198  Sum_probs=69.8

Q ss_pred             cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCch--hhh--c
Q 036960            6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPK--LLL--P   81 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~--~l~--~   81 (176)
                      .+.++++|++|++++|.|+.+|..+..+++|++|++++|+|+.++ .+.  .+++|+.|++++ |.++.++.  .+.  +
T Consensus        65 ~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~--~l~~L~~L~L~~-N~i~~~~~~~~l~~l~  140 (198)
T d1m9la_          65 SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE--KLVNLRVLYMSN-NKITNWGEIDKLAALD  140 (198)
T ss_dssp             CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHH--HHHHSSEEEESE-EECCCHHHHHHHTTTT
T ss_pred             cccCCccccChhhcccccccccccccccccccccccccccccccc-ccc--cccccccccccc-chhccccccccccCCC
Confidence            477899999999999999999876677788999999999999885 477  899999999999 99998873  233  2


Q ss_pred             CccceeeccCCc
Q 036960           82 SYPEKVDTFMLE   93 (176)
Q Consensus        82 ~L~~~L~l~~~~   93 (176)
                      +| ++|++++++
T Consensus       141 ~L-~~L~L~~N~  151 (198)
T d1m9la_         141 KL-EDLLLAGNP  151 (198)
T ss_dssp             TC-SEEEECSSH
T ss_pred             cc-ceeecCCCc
Confidence            67 888887753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=7.7e-08  Score=71.56  Aligned_cols=69  Identities=22%  Similarity=0.183  Sum_probs=32.4

Q ss_pred             CCcEEeccCCCCccccccccCCCCCcEE-EeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhcCc
Q 036960           12 LLKELNLCVNDFQRLPASIGSLSSLKRM-NLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLPSY   83 (176)
Q Consensus        12 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L-~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L   83 (176)
                      .++.|++++|+++.++..+....+++.+ ++++|+++.+|.. |.  ++++|+.|++++ |+++.+|.....++
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~--~l~~L~~L~Ls~-N~l~~l~~~~~~~l  224 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH--GASGPVILDISR-TRIHSLPSYGLENL  224 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTT--TSCCCSEEECTT-SCCCCCCSSSCTTC
T ss_pred             cceeeecccccccccccccccchhhhccccccccccccccHHHhc--CCCCCCEEECCC-CcCCccCHHHHcCC
Confidence            3444555555555544443334443333 2344445555443 44  555555555555 55555554333333

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=9e-08  Score=67.84  Aligned_cols=63  Identities=29%  Similarity=0.259  Sum_probs=34.8

Q ss_pred             CCCCCcEEeccCCCCcccc---ccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCC
Q 036960            9 CLSLLKELNLCVNDFQRLP---ASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQS   74 (176)
Q Consensus         9 ~l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~   74 (176)
                      .+++|++|++++|+|+.++   ..+..+++|+.|++++|.|+.+++. +.  ...+|+.|++++ |.+..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l--~~~~L~~L~L~~-Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI--KGLKLEELWLDG-NSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH--TTCCCSSCCCTT-STTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhh--hccccceeecCC-CCcCc
Confidence            4556666666666665542   2345566666666666666655542 22  233566666666 66543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=9.7e-07  Score=67.60  Aligned_cols=63  Identities=25%  Similarity=0.280  Sum_probs=31.7

Q ss_pred             cCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCC-CCcc--cCcccccccCCccceeeccccCCC
Q 036960            8 GCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVEN-KLDN--LPITISIKQISPLRTLELRNCNTL   72 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n-~l~~--lP~~~~~~~l~~L~~L~l~~cn~l   72 (176)
                      ..+++|++|++++|.++. .+..++.+++|++|+++++ .++.  +..-..  .+++|+.|++++|+.+
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~--~~~~L~~L~ls~c~~~  134 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS--SCSRLDELNLSWCFDF  134 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH--HCTTCCEEECCCCTTC
T ss_pred             HhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhH--HHHhcccccccccccc
Confidence            445555666665555544 3344555556666666553 3431  221223  4555555555555444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=6.8e-07  Score=68.52  Aligned_cols=86  Identities=17%  Similarity=0.226  Sum_probs=68.0

Q ss_pred             cCCCCCcEEeccCCCCcc--ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCCC--Cchhh--h
Q 036960            8 GCLSLLKELNLCVNDFQR--LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQS--LPKLL--L   80 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~~--lP~~l--~   80 (176)
                      ....+|++|+++++.++.  ++..+..+++|++|+++++.+. ..+..+.  .+++|+.|++++|+.++.  +..-+  .
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHh--cCCCCcCccccccccccccccchhhHHH
Confidence            356689999999998865  6667889999999999999987 5667788  899999999999988863  22111  2


Q ss_pred             cCccceeeccCCcCCc
Q 036960           81 PSYPEKVDTFMLESLS   96 (176)
Q Consensus        81 ~~L~~~L~l~~~~~L~   96 (176)
                      ++| ++|++++|..+.
T Consensus       121 ~~L-~~L~ls~c~~~~  135 (284)
T d2astb2         121 SRL-DELNLSWCFDFT  135 (284)
T ss_dssp             TTC-CEEECCCCTTCC
T ss_pred             Hhc-cccccccccccc
Confidence            378 999998886553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=6.6e-07  Score=63.21  Aligned_cols=45  Identities=27%  Similarity=0.368  Sum_probs=38.1

Q ss_pred             ccCCCCCcEEEeeCCCCcccC---cccccccCCccceeeccccCCCCCCch
Q 036960           30 IGSLSSLKRMNLVENKLDNLP---ITISIKQISPLRTLELRNCNTLQSLPK   77 (176)
Q Consensus        30 ~~~l~~L~~L~l~~n~l~~lP---~~~~~~~l~~L~~L~l~~cn~l~~lP~   77 (176)
                      +..+++|++|++++|+|+.++   ..+.  .+++|+.|++++ |.++.+++
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~--~l~~L~~L~Ls~-N~i~~l~~  108 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQ--KAPNLKILNLSG-NELKSERE  108 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHH--HSTTCCCCCCTT-SCCCCGGG
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHh--hCCccccccccc-Cccccchh
Confidence            356889999999999999774   3466  789999999999 99999885

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=8.9e-06  Score=64.31  Aligned_cols=58  Identities=17%  Similarity=0.272  Sum_probs=28.0

Q ss_pred             CCcEEeccCCCCcc--ccccccCCCCCcEEEeeCCCCc-----ccCcccccccCCccceeeccccCCC
Q 036960           12 LLKELNLCVNDFQR--LPASIGSLSSLKRMNLVENKLD-----NLPITISIKQISPLRTLELRNCNTL   72 (176)
Q Consensus        12 ~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~-----~lP~~~~~~~l~~L~~L~l~~cn~l   72 (176)
                      +|++|++++|+++.  +..-+..++++++|+|++|.|+     .++..+.  .+++|+.|++++ |.+
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~--~~~~L~~LdLs~-N~i   67 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRS-NEL   67 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTT-CCC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHh--cCCCCCEEECcC-CcC
Confidence            34555555555544  2223344455555555555544     1223334  455555555555 544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=3.9e-05  Score=60.47  Aligned_cols=82  Identities=16%  Similarity=0.197  Sum_probs=49.2

Q ss_pred             cCCCCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCCC--
Q 036960            8 GCLSLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQSL--   75 (176)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~l--   75 (176)
                      ..++++++|+|++|.|+.     +...+...++|++|+|++|.|+.     +.+.+. ....+|+.|++++ |.++..  
T Consensus        24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~-~~~~~L~~L~L~~-n~it~~~~  101 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ-TPSCKIQKLSLQN-CCLTGAGC  101 (460)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC-STTCCCCEEECTT-SCCBGGGH
T ss_pred             HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh-cCCCCCCEEECCC-CCcccccc
Confidence            346677788888887763     44456777788888888887752     222222 0224677888887 666532  


Q ss_pred             ---chhhh--cCccceeeccCC
Q 036960           76 ---PKLLL--PSYPEKVDTFML   92 (176)
Q Consensus        76 ---P~~l~--~~L~~~L~l~~~   92 (176)
                         +..+.  ++| ++|+++++
T Consensus       102 ~~l~~~l~~~~~L-~~L~L~~N  122 (460)
T d1z7xw1         102 GVLSSTLRTLPTL-QELHLSDN  122 (460)
T ss_dssp             HHHHHHTTSCTTC-CEEECCSS
T ss_pred             ccccchhhccccc-cccccccc
Confidence               22222  256 77777654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.83  E-value=0.00022  Score=55.08  Aligned_cols=37  Identities=16%  Similarity=0.232  Sum_probs=16.0

Q ss_pred             CCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCc
Q 036960           11 SLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLD   47 (176)
Q Consensus        11 ~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~   47 (176)
                      +.|+.+.+++|.++.     +...+...+.|++|++++|+|.
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  199 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR  199 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred             cccceeecccccccccccccccchhhhhhhhccccccccccc
Confidence            344445554444432     2222333444555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.38  E-value=0.0017  Score=45.17  Aligned_cols=80  Identities=19%  Similarity=0.176  Sum_probs=56.2

Q ss_pred             CCCCCcEEeccCC-CCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCCC--
Q 036960            9 CLSLLKELNLCVN-DFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQSL--   75 (176)
Q Consensus         9 ~l~~L~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~l--   75 (176)
                      +.++|++|+|+++ .++.     +-..+...++|++|++++|.+..     +.+.+.  ..+.|+.|++++ |.++.-  
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~--~n~~L~~L~L~~-n~i~~~g~   89 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE--TSPSLRVLNVES-NFLTPELL   89 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH--HCSSCCEEECCS-SBCCHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhh--hcccccceeeeh-hhcchHHH
Confidence            4588999999975 5654     23356778899999999998872     223345  668899999999 787541  


Q ss_pred             c---hhhh--cCccceeeccCC
Q 036960           76 P---KLLL--PSYPEKVDTFML   92 (176)
Q Consensus        76 P---~~l~--~~L~~~L~l~~~   92 (176)
                      .   ..+.  .+| ++|++.++
T Consensus        90 ~~l~~aL~~n~sL-~~L~l~~n  110 (167)
T d1pgva_          90 ARLLRSTLVTQSI-VEFKADNQ  110 (167)
T ss_dssp             HHHHHHTTTTCCC-SEEECCCC
T ss_pred             HHHHHHHHhCCcC-CEEECCCC
Confidence            1   1122  268 88988754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.10  E-value=0.0018  Score=49.64  Aligned_cols=82  Identities=18%  Similarity=0.246  Sum_probs=51.6

Q ss_pred             ccCCCCCcEEeccCCCCcc------ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCCC
Q 036960            7 IGCLSLLKELNLCVNDFQR------LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQSL   75 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~------lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~l   75 (176)
                      +...+.|++|++++|.++.      +...+...++|+.|++++|.++.     +...+.  .+++|+.|++++ |.++.-
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~--~~~~L~~L~Ls~-n~i~~~  258 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK--SWPNLRELGLND-CLLSAR  258 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG--GCTTCCEEECTT-CCCCHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccc--ccccchhhhhhc-CccCch
Confidence            3456678888888887754      23345667778888888887652     334456  677788888888 666431


Q ss_pred             -----chhhh----cCccceeeccCC
Q 036960           76 -----PKLLL----PSYPEKVDTFML   92 (176)
Q Consensus        76 -----P~~l~----~~L~~~L~l~~~   92 (176)
                           -..+.    ..+ ++|+++++
T Consensus       259 g~~~l~~~l~~~~~~~L-~~L~ls~N  283 (344)
T d2ca6a1         259 GAAAVVDAFSKLENIGL-QTLRLQYN  283 (344)
T ss_dssp             HHHHHHHHHHTCSSCCC-CEEECCSS
T ss_pred             hhHHHHHHhhhccCCCC-CEEECCCC
Confidence                 11111    146 77777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.71  E-value=0.003  Score=43.74  Aligned_cols=67  Identities=16%  Similarity=0.130  Sum_probs=39.1

Q ss_pred             ccCCCCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCCCc
Q 036960            7 IGCLSLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQSLP   76 (176)
Q Consensus         7 l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~lP   76 (176)
                      +..-++|++|++++|.++.     +...+...+.|++|++++|.|..     +-..+.  ..+.|+.|++++ |.+..+.
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~--~n~sL~~L~l~~-n~~~~~g  116 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL--VTQSIVEFKADN-QRQSVLG  116 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT--TTCCCSEEECCC-CSSCCCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHH--hCCcCCEEECCC-CcCCCcc
Confidence            3445667777777776654     22234455667777777776662     112344  456677777776 6555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.22  E-value=0.028  Score=38.28  Aligned_cols=63  Identities=16%  Similarity=0.244  Sum_probs=46.8

Q ss_pred             cCCCCCcEEeccCC-CCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCC
Q 036960            8 GCLSLLKELNLCVN-DFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQ   73 (176)
Q Consensus         8 ~~l~~L~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~   73 (176)
                      .+.++|++|+++++ .++.     +-..+...++|++|++++|.+..     +-+.+.  ..+.++.+++++ +.++
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~--~~~~l~~l~l~~-~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--VNNTLKSLNVES-NFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--HCSSCCEEECCS-SCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHh--hcccchhhhhcc-cccc
Confidence            45689999999974 5754     33356788899999999998873     223345  678899999998 6664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.30  E-value=0.04  Score=37.46  Aligned_cols=66  Identities=17%  Similarity=0.217  Sum_probs=48.1

Q ss_pred             cccCCCCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeecccc-CCCC
Q 036960            6 DIGCLSLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNC-NTLQ   73 (176)
Q Consensus         6 ~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~c-n~l~   73 (176)
                      .+...++|++|++++|.++.     +-..+...++++.+++++|.+..     +-..+.  ..++|+.++++.| |.++
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~--~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ--SNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG--GCSSCCEEECCCCSSCCC
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHH--hCccccEEeeccCCCcCc
Confidence            35577899999999999876     33356678899999999998762     334556  7788887666542 4553