Citrus Sinensis ID: 036979

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
SHREFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCSCPASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVGPQIGPNNPKFALVLLYSLLLRLLLSTGALSRLILSDDSLRMAVNEFRTSKCLMAYFNSNLPH
cccEEEEccEEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccEEEEccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHcccccc
cccHcccccEEEEEEEcccccHHHccccccccccccccEEEEEccccHcccccccHHHccEEEEEccccccccccccccEEEEEcccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHccHHHEEcccccc
shrefknnkIITLLTcwtgldwadwagpsirmgfhhcscpaskkknyleLTDDELLRECEmhtykssgpggqhrnkcetavrlkhvptgvIAQAAEDRSQHKNRALALSRLPTFLALKVrssvnlgayspplqllqilppkstirssevgpqigpnnpKFALVLLYSLLLRLLLSTGALSRLILSDDSLRMAVNEFRTSKCLMAYFNSNLPH
shrefknnkiITLLTCWTGLDWADWAGPSIRMGFHHCSCPASKKKNYLELTDDELLRECEMHtykssgpggqhrNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVGPQIGPNNPKFALVLLYSLLLRLLLSTGALSRLILSDDSLRMAVNEFRTSKCLMAYFNSNLPH
SHREFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCSCPASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSpplqllqilppKSTIRSSEVGPQIGPNNPKFAlvllyslllrlllstgalsrlilsddslrMAVNEFRTSKCLMAYFNSNLPH
*******NKIITLLTCWTGLDWADWAGPSIRMGFHHCSCPASKKKNYLELTDDELLRECEM*****************TAVRLKHVPTGVIA************ALALSRLPTFLALKVRSSVNLGAYSPPLQLLQIL******************NPKFALVLLYSLLLRLLLSTGALSRLILSDDSLRMAVNEFRTSKCLMAYFN*****
*HREFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCSCPASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAA***********ALSRLPTFL*********************************VGPQIGPNNPKFALVLLYSLLLRLLLSTGALSRLILSDDSLRMAVNEFRTSKCLMAYFNSN***
SHREFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCSCPASKKKNYLELTDDELLRECEMHTY***********KCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVGPQIGPNNPKFALVLLYSLLLRLLLSTGALSRLILSDDSLRMAVNEFRTSKCLMAYFNSNLPH
****FKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCSCPASKKKNYLELTDDELLRECEMHTYKSSG****HRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNL****************STIRSSEVGPQIGPNNPKFALVLLYSLLLRLLLSTGALSRLILSDDSLRMAVNEFRTSKCLMAYFNSNL**
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SHREFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCSCPASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVGPQIGPNNPKFALVLLYSLLLRLLLSTGALSRLILSDDSLRMAVNEFRTSKCLMAYFNSNLPH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query212 2.2.26 [Sep-21-2011]
A7ZE19366 Peptide chain release fac yes no 0.377 0.218 0.372 9e-14
Q30TP0365 Peptide chain release fac yes no 0.278 0.161 0.542 3e-13
A0RQM7369 Peptide chain release fac yes no 0.349 0.200 0.445 4e-13
A5IED7362 Peptide chain release fac yes no 0.367 0.215 0.425 4e-13
Q5WUB1362 Peptide chain release fac yes no 0.367 0.215 0.425 4e-13
Q5ZT29362 Peptide chain release fac yes no 0.367 0.215 0.425 4e-13
Q5X2V3362 Peptide chain release fac yes no 0.367 0.215 0.425 4e-13
A6Q582368 Peptide chain release fac yes no 0.278 0.160 0.491 1e-12
Q12F86373 Peptide chain release fac yes no 0.301 0.171 0.484 2e-12
A1W163365 Peptide chain release fac yes no 0.316 0.183 0.492 2e-12
>sp|A7ZE19|RF2_CAMC1 Peptide chain release factor 2 OS=Campylobacter concisus (strain 13826) GN=prfB PE=3 SV=1 Back     alignment and function desciption
 Score = 77.0 bits (188), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 14/94 (14%)

Query: 57  RECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLA 116
           ++ ++ TY++SG GGQH NK E+A+R+ H+PTG++ Q   DRSQHKNRA A+  L + L 
Sbjct: 236 KDLKIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRLY 295

Query: 117 LKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVG 150
                          L+L++     +++  SE+G
Sbjct: 296 --------------ELELMKQQEASNSVEKSEIG 315
Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
Campylobacter concisus (strain 13826) (taxid: 360104)
>sp|Q30TP0|RF2_SULDN Peptide chain release factor 2 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|A0RQM7|RF2_CAMFF Peptide chain release factor 2 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|A5IED7|RF1_LEGPC Peptide chain release factor 1 OS=Legionella pneumophila (strain Corby) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q5WUB1|RF1_LEGPL Peptide chain release factor 1 OS=Legionella pneumophila (strain Lens) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q5ZT29|RF1_LEGPH Peptide chain release factor 1 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q5X2V3|RF1_LEGPA Peptide chain release factor 1 OS=Legionella pneumophila (strain Paris) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|A6Q582|RF2_NITSB Peptide chain release factor 2 OS=Nitratiruptor sp. (strain SB155-2) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q12F86|RF1_POLSJ Peptide chain release factor 1 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|A1W163|RF2_CAMJJ Peptide chain release factor 2 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=prfB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
224127830257 predicted protein [Populus trichocarpa] 0.787 0.649 0.627 4e-54
356559945250 PREDICTED: uncharacterized protein LOC10 0.75 0.636 0.633 7e-53
359493583224 PREDICTED: peptide chain release factor 0.731 0.691 0.696 5e-52
242059479259 hypothetical protein SORBIDRAFT_03g04217 0.740 0.606 0.635 5e-52
414879327253 TPA: hypothetical protein ZEAMMB73_57118 0.740 0.620 0.629 1e-51
357126252239 PREDICTED: uncharacterized protein LOC10 0.740 0.656 0.635 2e-51
326517198170 predicted protein [Hordeum vulgare subsp 0.721 0.9 0.650 2e-51
414873877 507 TPA: hypothetical protein ZEAMMB73_69586 0.745 0.311 0.614 4e-50
125528646246 hypothetical protein OsI_04716 [Oryza sa 0.721 0.621 0.638 5e-50
297851766256 hypothetical protein ARALYDRAFT_473511 [ 0.735 0.609 0.623 3e-49
>gi|224127830|ref|XP_002329188.1| predicted protein [Populus trichocarpa] gi|222870969|gb|EEF08100.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 113/180 (62%), Positives = 136/180 (75%), Gaps = 13/180 (7%)

Query: 35  HHCSCPASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQA 94
           ++ S       NYLELTDDEL+R+CEM T+K+SGPGGQHRNK E+AVRLKH+PTG+IAQA
Sbjct: 78  YNTSASHGNGTNYLELTDDELMRQCEMDTFKASGPGGQHRNKRESAVRLKHLPTGIIAQA 137

Query: 95  AEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVGPQIG 154
            EDRSQH NRA AL RL   LA++VR+S+++ +Y+P L+LLQILP KSTIR S+ GPQIG
Sbjct: 138 VEDRSQHMNRASALKRLRALLAIRVRNSLDIDSYTPRLELLQILPLKSTIRGSDCGPQIG 197

Query: 155 PNNPKFALVL--LYSLLL----------RLL-LSTGALSRLILSDDSLRMAVNEFRTSKC 201
           P NPKF L +  L  L+           +LL LSTGALSRLILSDDSLRMAVN+ R SK 
Sbjct: 198 PKNPKFILGMQALLDLIFAVDGSISEAGKLLGLSTGALSRLILSDDSLRMAVNDLRNSKV 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356559945|ref|XP_003548256.1| PREDICTED: uncharacterized protein LOC100793467 [Glycine max] Back     alignment and taxonomy information
>gi|359493583|ref|XP_002263666.2| PREDICTED: peptide chain release factor 1-like [Vitis vinifera] gi|297734721|emb|CBI16955.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|242059479|ref|XP_002458885.1| hypothetical protein SORBIDRAFT_03g042170 [Sorghum bicolor] gi|241930860|gb|EES04005.1| hypothetical protein SORBIDRAFT_03g042170 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|414879327|tpg|DAA56458.1| TPA: hypothetical protein ZEAMMB73_571187 [Zea mays] Back     alignment and taxonomy information
>gi|357126252|ref|XP_003564802.1| PREDICTED: uncharacterized protein LOC100830192 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|326517198|dbj|BAJ99965.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|414873877|tpg|DAA52434.1| TPA: hypothetical protein ZEAMMB73_695866 [Zea mays] Back     alignment and taxonomy information
>gi|125528646|gb|EAY76760.1| hypothetical protein OsI_04716 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|297851766|ref|XP_002893764.1| hypothetical protein ARALYDRAFT_473511 [Arabidopsis lyrata subsp. lyrata] gi|297339606|gb|EFH70023.1| hypothetical protein ARALYDRAFT_473511 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
TAIR|locus:2006897257 AT1G33330 [Arabidopsis thalian 0.537 0.443 0.608 1.5e-33
TIGR_CMR|CJE_1628365 CJE_1628 "peptide chain releas 0.382 0.221 0.460 5.4e-14
TIGR_CMR|APH_0479376 APH_0479 "peptide chain releas 0.287 0.162 0.491 8.6e-13
UNIPROTKB|Q74EJ1107 GSU0971 "Hydrolase, putative" 0.306 0.607 0.461 1.2e-12
TIGR_CMR|GSU_0971107 GSU_0971 "peptidyl-tRNA hydrol 0.306 0.607 0.461 1.2e-12
TIGR_CMR|GSU_2278372 GSU_2278 "peptide chain releas 0.297 0.169 0.477 3.2e-12
UNIPROTKB|Q3Z8Y6362 prfB "Peptide chain release fa 0.292 0.171 0.396 1.3e-11
TIGR_CMR|DET_0570362 DET_0570 "peptide chain releas 0.292 0.171 0.396 1.3e-11
TIGR_CMR|CPS_3552362 CPS_3552 "peptide chain releas 0.254 0.149 0.518 1.7e-11
TIGR_CMR|SO_3833363 SO_3833 "peptide chain release 0.254 0.148 0.5 2.2e-11
TAIR|locus:2006897 AT1G33330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 70/115 (60%), Positives = 90/115 (78%)

Query:    46 NYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRA 105
             NYL+ TD+EL+++C + T++ SGPGGQHRNK ++AVRLKH+PTG++AQA EDRSQHKNRA
Sbjct:    85 NYLKFTDEELMKQCRLETFRVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKNRA 144

Query:   106 LALSRLPTFLALKVRSSVNLGAYSXXXXXXXXXXXKSTIRSSEVGPQIGPNNPKF 160
              AL+RL T LA+KVR+ V++ AY+           KSTIR+S  G QIGPNNPKF
Sbjct:   145 SALNRLRTLLAIKVRNKVDIEAYAPPPELLQILPPKSTIRTSS-GSQIGPNNPKF 198
GO:0003747 "translation release factor activity" evidence=IEA;ISS
GO:0006415 "translational termination" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0006783 "heme biosynthetic process" evidence=RCA
TIGR_CMR|CJE_1628 CJE_1628 "peptide chain release factor 2" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0479 APH_0479 "peptide chain release factor 2, programmed frameshift" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
UNIPROTKB|Q74EJ1 GSU0971 "Hydrolase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0971 GSU_0971 "peptidyl-tRNA hydrolase domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2278 GSU_2278 "peptide chain release factor 2, programmed frameshift" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q3Z8Y6 prfB "Peptide chain release factor 2" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0570 DET_0570 "peptide chain release factor 2, programmed frameshift" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3552 CPS_3552 "peptide chain release factor 1" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3833 SO_3833 "peptide chain release factor 1" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
pfam00472114 pfam00472, RF-1, RF-1 domain 7e-23
PRK00578367 PRK00578, prfB, peptide chain release factor 2; Va 7e-20
COG1186239 COG1186, PrfB, Protein chain release factor B [Tra 1e-19
PRK00591359 PRK00591, prfA, peptide chain release factor 1; Va 2e-19
COG0216363 COG0216, PrfA, Protein chain release factor A [Tra 2e-18
TIGR00020364 TIGR00020, prfB, peptide chain release factor 2 5e-18
TIGR00019360 TIGR00019, prfA, peptide chain release factor 1 5e-17
PRK05589325 PRK05589, PRK05589, peptide chain release factor 2 1e-16
PRK07342339 PRK07342, PRK07342, peptide chain release factor 2 1e-16
TIGR03072200 TIGR03072, release_prfH, putative peptide chain re 8e-16
PRK08179200 PRK08179, prfH, peptide chain release factor-like 3e-15
PRK08787313 PRK08787, PRK08787, peptide chain release factor 2 2e-12
PRK06746326 PRK06746, PRK06746, peptide chain release factor 2 4e-09
PRK09256138 PRK09256, PRK09256, hypothetical protein; Provisio 1e-07
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain Back     alignment and domain information 
 Score = 88.4 bits (220), Expect = 7e-23
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 58  ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRL 111
           +  + T++SSGPGGQ+ NK E+AVRL H+PTG++ +  E+RSQHKNR  AL RL
Sbjct: 14  DLRIDTFRSSGPGGQNVNKTESAVRLTHLPTGIVVKCQEERSQHKNREKALERL 67

This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis. Length = 114
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated Back     alignment and domain information
>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated Back     alignment and domain information
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2 Back     alignment and domain information
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1 Back     alignment and domain information
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H Back     alignment and domain information
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 212
COG0216363 PrfA Protein chain release factor A [Translation, 100.0
TIGR00019360 prfA peptide chain release factor 1. This model de 100.0
PRK08787313 peptide chain release factor 2; Provisional 100.0
PRK05589325 peptide chain release factor 2; Provisional 100.0
PRK06746326 peptide chain release factor 2; Provisional 100.0
PRK07342339 peptide chain release factor 2; Provisional 100.0
PRK00591359 prfA peptide chain release factor 1; Validated 100.0
KOG2726386 consensus Mitochondrial polypeptide chain release 100.0
TIGR00020364 prfB peptide chain release factor 2. In many but n 100.0
PRK00578367 prfB peptide chain release factor 2; Validated 100.0
TIGR03072200 release_prfH putative peptide chain release factor 100.0
PRK08179200 prfH peptide chain release factor-like protein; Re 100.0
COG1186239 PrfB Protein chain release factor B [Translation, 100.0
PF00472113 RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha 99.97
PRK09256138 hypothetical protein; Provisional 99.89
KOG3429172 consensus Predicted peptidyl-tRNA hydrolase [Trans 99.72
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-52  Score=380.78  Aligned_cols=164  Identities=26%  Similarity=0.364  Sum_probs=143.4

Q ss_pred             ceeechhhhHhhhhhccccceeecCCccccceeEee-----eCCCCCC-CccccChhhhhccceEEEEeeCCCCCCCCCc
Q 036979            3 REFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCS-----CPASKKK-NYLELTDDELLRECEMHTYKSSGPGGQHRNK   76 (212)
Q Consensus         3 ~~~~g~~~~~~l~~e~Gvhrvqrvp~~~~~~~~~~s-----~~~~~~~-~~i~i~~~~L~~~~~i~~~RsSGPGGQ~VNK   76 (212)
                      ..|+|.++|+.|+||+|||||||||.|+..|+.|+|     |+|..+. ..+.|+++||    +|++|||||+||||||+
T Consensus       167 ~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~Dl----rIDt~RsSGaGGQhVNt  242 (363)
T COG0216         167 ASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDL----RIDTFRSSGAGGQHVNT  242 (363)
T ss_pred             EEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCcccccccChHHc----eeeeeecCCCCCCCcCc
Confidence            468999999999999999999999999999988886     5666654 4799999999    99999999999999999


Q ss_pred             cCceEEEEEecCCcEEEEcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhcCCCCCcccCCCCCCCcCCC
Q 036979           77 CETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVGPQIGPN  156 (212)
Q Consensus        77 t~saVrl~HlPtGIvv~~~e~RSq~~Nk~~Al~~L~~~l~~~~~e~~~~~~~s~~~e~~q~~~rKsqir~~drs~qIRtY  156 (212)
                      |+||||||||||||+|+||++|||++||+.||+.|+++|....+++.+.         .++..||+|+++||||++||||
T Consensus       243 TdSAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~---------~~~~~RksqVGSGDRSErIRTY  313 (363)
T COG0216         243 TDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQA---------EEASERKSQVGSGDRSERIRTY  313 (363)
T ss_pred             cchhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCCchhhhhhcc
Confidence            9999999999999999999999999999999999999888766655442         2356899999999999999999


Q ss_pred             CcchHHHHHHHHH--HHhcCChhHHHHHhhc
Q 036979          157 NPKFALVLLYSLL--LRLLLSTGALSRLILS  185 (212)
Q Consensus       157 N~~fp~~~~ldl~--~~lg~sts~l~k~l~~  185 (212)
                      ||  |    =.-+  -|.||+-=.|..+|.+
T Consensus       314 Nf--P----QnRVTDHRI~lTl~kLd~vm~g  338 (363)
T COG0216         314 NF--P----QNRVTDHRINLTLYKLDEVMEG  338 (363)
T ss_pred             CC--C----CCcccchhcccccccHHHHhcc
Confidence            94  5    3344  3778888788888874

>TIGR00019 prfA peptide chain release factor 1 Back     alignment and domain information
>PRK08787 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK05589 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK06746 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK07342 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK00591 prfA peptide chain release factor 1; Validated Back     alignment and domain information
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00020 prfB peptide chain release factor 2 Back     alignment and domain information
>PRK00578 prfB peptide chain release factor 2; Validated Back     alignment and domain information
>TIGR03072 release_prfH putative peptide chain release factor H Back     alignment and domain information
>PRK08179 prfH peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [] Back     alignment and domain information
>PRK09256 hypothetical protein; Provisional Back     alignment and domain information
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
1ml5_Z365 Structure Of The E. Coli Ribosomal Termination Comp 7e-12
1mi6_A365 Docking Of The Modified Rf2 X-Ray Structure Into Th 7e-12
1gqe_A365 Polypeptide Chain Release Factor 2 (Rf2) From Esche 4e-11
2b3t_B360 Molecular Basis For Bacterial Class 1 Release Facto 6e-11
2fvo_A333 Docking Of The Modified Rf1 X-ray Structure Into Th 9e-09
1rq0_A342 Crystal Structure Of Peptide Releasing Factor 1 Len 1e-08
2b64_Y354 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 3e-07
1zbt_A371 Crystal Structure Of Peptide Chain Release Factor 1 5e-07
3f1e_X378 Crystal Structure Of A Translation Termination Comp 6e-07
2ihr_1365 Rf2 Of Thermus Thermophilus Length = 365 7e-07
2x9r_Y351 Structure Of The 70s Ribosome Bound To Release Fact 7e-07
2wh1_Y351 Insights Into Translational Termination From The St 7e-07
2b9m_Y365 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 8e-07
2rsm_A115 Solution Structure And Sirna-Mediated Knockdown Ana 5e-06
>pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365 Back     alignment and structure 
Iteration: 1

 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 47  YLELTDDELLR----ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHK 102
           Y E+ DD  +     +  +  Y++SG GGQH N+ E+AVR+ H+PTG++ Q   DRSQHK
Sbjct: 223 YPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHK 282
Query: 103 NRALALSRLPTFL 115
           N+  A+ ++   L
Sbjct: 283 NKDQAMKQMKAKL 295
>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 Back     alignment and structure
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 Back     alignment and structure
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 Back     alignment and structure
>pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With Rf1 Length = 333 Back     alignment and structure
>pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342 Back     alignment and structure
>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354 Back     alignment and structure
>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1) (smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371 Back     alignment and structure
>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 378 Back     alignment and structure
>pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365 Back     alignment and structure
>pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351 Back     alignment and structure
>pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome Length = 351 Back     alignment and structure
>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365 Back     alignment and structure
>pdb|2RSM|A Chain A, Solution Structure And Sirna-Mediated Knockdown Analysis Of The Mitochondrial Disease-Related Protein C12orf65 (Ict2) Length = 115 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 2e-22
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 2e-20
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 5e-20
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 8e-20
2b3t_B360 RF-1, peptide chain release factor 1; translation 1e-19
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 1e-19
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 3e-19
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 2e-13
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 3e-13
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 5e-11
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115 Back     alignment and structure
 Score = 86.6 bits (215), Expect = 2e-22
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 48  LELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALA 107
           L L + EL    E    K  GPGGQ  NK    V LKHVP+G++ +  + RS  +NR +A
Sbjct: 41  LPLNESEL----EEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIA 96

Query: 108 LSRL 111
              L
Sbjct: 97  RKVL 100
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Back     alignment and structure
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108 Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 100.0
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 100.0
2b3t_B360 RF-1, peptide chain release factor 1; translation 100.0
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 100.0
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 100.0
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 100.0
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 100.0
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 99.94
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 99.93
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 99.91
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Back     alignment and structure
Probab=100.00  E-value=9.1e-48  Score=353.15  Aligned_cols=165  Identities=24%  Similarity=0.283  Sum_probs=131.8

Q ss_pred             ceeechhhhHhhhhhccccceeecCCccccceeEee-----eCCCCCCCccccChhhhhccceEEEEeeCCCCCCCCCcc
Q 036979            3 REFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCS-----CPASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKC   77 (212)
Q Consensus         3 ~~~~g~~~~~~l~~e~Gvhrvqrvp~~~~~~~~~~s-----~~~~~~~~~i~i~~~~L~~~~~i~~~RsSGPGGQ~VNKt   77 (212)
                      +.|+|.++|++|++|+|||||||||+++..|+.|+|     |+|..+...+.|+++||    +|+|+|||||||||||||
T Consensus       178 ~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~ev~i~I~~~dl----~i~~~RssGpGGQ~VNkt  253 (371)
T 1zbt_A          178 AMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDL----RVDIYHASGAGGQNVNKV  253 (371)
T ss_dssp             EEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEECCCGGGSCCCGGGE----EEEEECC---------CC
T ss_pred             EEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEEEeccccccccccCcCcE----EEEEecCCCCCCCccccc
Confidence            579999999999999999999999999976666554     56655556678888877    999999999999999999


Q ss_pred             CceEEEEEecCCcEEEEcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhcCCCCCcccCCCCCCCcCCCC
Q 036979           78 ETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVGPQIGPNN  157 (212)
Q Consensus        78 ~saVrl~HlPtGIvv~~~e~RSq~~Nk~~Al~~L~~~l~~~~~e~~~~~~~s~~~e~~q~~~rKsqir~~drs~qIRtYN  157 (212)
                      +|||+|+|+||||+|+||++|||++||+.||++|+++|.....++.+.+         ....+++++++|+||++|||||
T Consensus       254 ~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~---------~~~~r~~~ig~g~Rse~IRtYn  324 (371)
T 1zbt_A          254 ATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDE---------QDAERKSTVGTGDRSERIRTYN  324 (371)
T ss_dssp             CCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TCC----CCSCSCTTSEEEEEE
T ss_pred             ceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhhccccccCCCeeeEE
Confidence            9999999999999999999999999999999999998887766554321         1345789999999999999999


Q ss_pred             cchHHHHHHHHHH--HhcCChhHHHHHhhcC
Q 036979          158 PKFALVLLYSLLL--RLLLSTGALSRLILSD  186 (212)
Q Consensus       158 ~~fp~~~~ldl~~--~lg~sts~l~k~l~~~  186 (212)
                      |. |     +.|+  |+|+++++|..||.+|
T Consensus       325 f~-q-----~rVtDhRtg~~~~~l~~VldGd  349 (371)
T 1zbt_A          325 FP-Q-----NRVTDHRIGLTLQKLDSILSGK  349 (371)
T ss_dssp             TT-T-----TEEEETTTTEEESCHHHHHTTC
T ss_pred             CC-C-----CEeeecccCCeECChHHHhCCc
Confidence            84 3     5675  9999999999999997
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 212
d1j26a_112 d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [ 1e-12
d2b3tb1344 e.38.1.1 (B:7-354) Peptide chain release factor 1, 3e-07
d1rq0a_333 e.38.1.1 (A:) Peptide chain release factor 1, RF1 4e-07
d1gqea_362 e.38.1.1 (A:) Polypeptide chain release factor 2 ( 5e-07
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: Peptidyl-tRNA hydrolase domain-like
family: Peptidyl-tRNA hydrolase domain
domain: Ict1 protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (145), Expect = 1e-12
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 25/79 (31%)

Query: 58  ECEMHTYKSSGPGGQHRNKCETAVRLKH-------------------------VPTGVIA 92
              +   +SSGPGGQ+ NK  +   ++                              ++ 
Sbjct: 21  RLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVL 80

Query: 93  QAAEDRSQHKNRALALSRL 111
            +   R Q +N A  L ++
Sbjct: 81  TSESSRYQFRNLAECLQKI 99
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
d1rq0a_333 Peptide chain release factor 1, RF1 {Thermotoga ma 100.0
d2b3tb1344 Peptide chain release factor 1, RF1 {Escherichia c 100.0
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 100.0
d1j26a_112 Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} 99.86
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Peptide chain release factor 1, RF1
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.9e-51  Score=367.13  Aligned_cols=166  Identities=25%  Similarity=0.298  Sum_probs=133.0

Q ss_pred             cceeechhhhHhhhhhccccceeecCCccccceeEee-----eCCCCCCCccccChhhhhccceEEEEeeCCCCCCCCCc
Q 036979            2 HREFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCS-----CPASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNK   76 (212)
Q Consensus         2 ~~~~~g~~~~~~l~~e~Gvhrvqrvp~~~~~~~~~~s-----~~~~~~~~~i~i~~~~L~~~~~i~~~RsSGPGGQ~VNK   76 (212)
                      .+.|+|+++|++|++|+|||||||+|+++..++.|+|     ++|......+.|+++||    +|+|+||||||||||||
T Consensus       140 ~~~I~G~~ayg~Lk~E~GvHRv~Rvp~~~~~~r~hTs~~~V~v~p~~~~~~v~i~~~dl----~i~~~RssG~GGQ~VNk  215 (333)
T d1rq0a_         140 VFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDL----KIETFRASGHGGQYVNK  215 (333)
T ss_dssp             EEEEESTTHHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCGGGSCCCGGGE----EEEEECCCC----CCSS
T ss_pred             heeeccccchhhhcccccceeEEEecccCCCCceEEEEEEEEEecccccccccccccce----eEEeecCCccccchhhh
Confidence            3689999999999999999999999999876655543     56666666788998888    99999999999999999


Q ss_pred             cCceEEEEEecCCcEEEEcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhcCCCCCcccCCCCCCCcCCC
Q 036979           77 CETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVGPQIGPN  156 (212)
Q Consensus        77 t~saVrl~HlPtGIvv~~~e~RSq~~Nk~~Al~~L~~~l~~~~~e~~~~~~~s~~~e~~q~~~rKsqir~~drs~qIRtY  156 (212)
                      |+|||||+|+||||+|+||++|||++||+.||++|+++|.....++.+.+         ....+|+|+++++||+|||||
T Consensus       216 t~sAVRitH~PTGi~v~~q~eRSQ~~Nk~~A~~~L~~kl~~~~~~~~~~~---------~~~~r~~~~~~~~r~~~iRtY  286 (333)
T d1rq0a_         216 TESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKERE---------ISQKRKSQIGTGERSEKIRTY  286 (333)
T ss_dssp             SSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTT---------TCC----------CCCEEEEE
T ss_pred             hhheeEEEEcCCccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhccccccccCCCceee
Confidence            99999999999999999999999999999999999998876655554432         135789999999999999999


Q ss_pred             CcchHHHHHHHHHH--HhcCChhHHHHHhhcC
Q 036979          157 NPKFALVLLYSLLL--RLLLSTGALSRLILSD  186 (212)
Q Consensus       157 N~~fp~~~~ldl~~--~lg~sts~l~k~l~~~  186 (212)
                      ||  |    ++.|+  |+|+++++|..||.++
T Consensus       287 ~~--p----~~rV~DhR~~~~~~~l~~vl~G~  312 (333)
T d1rq0a_         287 NF--P----QNRVTDHRINYTSYRLQEILDGD  312 (333)
T ss_dssp             ET--T----TTEEEETTTTEEESCHHHHHTTC
T ss_pred             eC--C----CCcchhhccCCeecChhHHhCCC
Confidence            95  8    89995  9999999999999997
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure