Citrus Sinensis ID: 036984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600---
Protein Sequence
FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCYYFVGDNLILKRFYRGRV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHcccccEEEcccccccccccccccccccccccEEEccccccEEEcccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEcccccccccccccEEEcccccEEEcccccccccccEEEccccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccccccccccEEEccccccEEcccccHHHccccccccccccccEEccccccccccccHHHcccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHHHHHHHHccccccccccccccccccEEEEEEcccccccccHHHHcccccEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHEEHHHHcccHHHHHHHHHHHHHHcEEEEEEEEEEHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHccccccccccccccccccccEEEEEccccccccccccHHHcccccccEEEcccccccccccccccccccEEEEEccccccccccHHHcccccccEEEEccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHcccccccEEEEcccccccccccccccccccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHccccccccEEEEEccccccccccHHHHcccccccEEEccccEEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHcHHHHcccccccccccccccccEEEEEccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcEEcccccccc
Coil and Loop (DISEMBL)
FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSllgawqttSLQELNVASnkltrnfplGLCELVLLRELYidnndlsgslplcltnltslQVLDVSYNQltesisssplMLLTSIEELIlsnnhfqipisleplsnlsklkafngeiyleteshynsltpkfqltsislsgyrddgtfpkflyhqhdlknadlshlnlsgefpnwlmpihclqklatldvsnnffqghipveigtylpglmhlnlsrnafndlsynrlqgsipnwidrlPQISYLLLANNYIEGEIPAQLCQLKEVRLIdlshnnlsghipFCLVNTalsegyydavaptwdhasapalsyfspngspmgkeETVQILTSMsgidlscnkltgeiptqiGYLTRIRALNlshnnltgtipitfsnlkqIESLDLSYNllhgkipqlIVLTTLAVFRVAYNnlsgkipdrvaqfstfeedsyegnpflygqplskscddnglttvtteayteneeggslidmdSFLITFTVSYGIAIIGIIGVlyvnpywrrRWFYLVEVCMTScyyfvgdnliLKRFYRGRV
Flexible Loop (DISEMBL)
fhefknlehlvMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAyteneeggsliDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCyyfvgdnlilKRFYRGRV
Low Complexity Region (SEG)
FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMAslrllslsysrlNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPlglcelvllrelYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCYYFVGDNLILKRFYRGRV
Disordered region (IsUnstruct)
******LEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYF************VQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCYYFVGDNLILKRFYR***
Disordered Region (DISOPRED)
FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTAL*************HASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPL***************************DMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCYYFVGDNLILKRFYRGRV
Disordered Region (DISEMBL)
FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCYYFVGDNLILKRFYRGRV
Disordered Region (DISPRO)
F*EFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCYYFVGDNLILKRF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCYYFVGDNLILKRFYRGRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	603	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.736	0.354	0.316	2e-43
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.689	0.388	0.334	9e-41
Q9LHP4	1141	Receptor-like protein kin	no	no	0.678	0.358	0.304	2e-37
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.749	0.461	0.31	2e-37
Q9C9H7	847	Receptor-like protein 12	no	no	0.786	0.559	0.281	5e-37
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.686	0.405	0.307	1e-35
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.655	0.347	0.317	1e-35
Q9LJF3	1164	Receptor-like protein kin	no	no	0.650	0.336	0.313	2e-35
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.799	0.403	0.300	2e-35
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.708	0.366	0.284	4e-35

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  177 bits (450), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 166/524 (31%), Positives = 253/524 (48%), Gaps = 80/524 (15%)

Query: 35  RLLSLSYSRLNKNTI---LDQGFCQLVHLQELYIRDNDLRDSL------LGAWQ------ 79
           +L+ L+   LN N++   L      L +LQE  +  N+L   +      LG  +      
Sbjct: 383 QLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYE 442

Query: 80  -------------TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLT 126
                         T LQE++   N+L+   P  +  L  L  L++  N+L G++P  L 
Sbjct: 443 NRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLG 502

Query: 127 NLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ--IPISLEPLSNLSKL--- 181
           N   + V+D++ NQL+ SI SS    LT++E  ++ NN  Q  +P SL  L NL+++   
Sbjct: 503 NCHQMTVIDLADNQLSGSIPSS-FGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFS 561

Query: 182 -KAFNGEIY-LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNL 239
              FNG I  L   S Y S         ++ +G+  +G  P  L    +L    L     
Sbjct: 562 SNKFNGSISPLCGSSSYLSF-------DVTENGF--EGDIPLELGKSTNLDRLRLGKNQF 612

Query: 240 SGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRL 299
           +G  P     I    +L+ LD+S N   G IPVE+G     L H+        DL+ N L
Sbjct: 613 TGRIPRTFGKI---SELSLLDISRNSLSGIIPVELG-LCKKLTHI--------DLNNNYL 660

Query: 300 QGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTA 359
            G IP W+ +LP +  L L++N   G +P ++  L  +  + L  N+L+G IP  + N  
Sbjct: 661 SGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQ 720

Query: 360 LSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQ 419
                 +A+    +  S P  S             T+  L+ +  + LS N LTGEIP +
Sbjct: 721 ----ALNALNLEENQLSGPLPS-------------TIGKLSKLFELRLSRNALTGEIPVE 763

Query: 420 IGYLTRIR-ALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFR 477
           IG L  ++ AL+LS+NN TG IP T S L ++ESLDLS+N L G++P Q+  + +L    
Sbjct: 764 IGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLN 823

Query: 478 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNG 521
           ++YNNL GK+     QFS ++ D++ GN  L G PLS  C+  G
Sbjct: 824 LSYNNLEGKLK---KQFSRWQADAFVGNAGLCGSPLSH-CNRAG 863

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score =  168 bits (426), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 159/476 (33%), Positives = 218/476 (45%), Gaps = 60/476 (12%)

Query: 54  FCQLVHLQELYIRDNDLRDSL---LGAWQTTSLQELNVASNKLTRNFPLGLCELVLLREL 110
           F  LV+LQ L + D ++  ++   LG    + L+ L +  NKLT + P  L +L  +  L
Sbjct: 232 FGNLVNLQTLALYDTEISGTIPPQLGL--CSELRNLYLHMNKLTGSIPKELGKLQKITSL 289

Query: 111 YIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF--QI 168
            +  N LSG +P  ++N +SL V DVS N LT  I    L  L  +E+L LS+N F  QI
Sbjct: 290 LLWGNSLSGVIPPEISNCSSLVVFDVSANDLTGDIPGD-LGKLVWLEQLQLSDNMFTGQI 348

Query: 169 PISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHD 228
           P  L   S+L  L+    ++     S   +L     L S  L      GT P    +  D
Sbjct: 349 PWELSNCSSLIALQLDKNKLSGSIPSQIGNLK---SLQSFFLWENSISGTIPSSFGNCTD 405

Query: 229 LKNADLSHLNLSGEFPNWLM---------------------PIHCLQKLATLDVSNNFFQ 267
           L   DLS   L+G  P  L                       +   Q L  L V  N   
Sbjct: 406 LVALDLSRNKLTGRIPEELFSLKRLSKLLLLGNSLSGGLPKSVAKCQSLVRLRVGENQLS 465

Query: 268 GHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEI 327
           G IP EIG          L    F DL  N   G +P  I  +  +  L + NNYI G+I
Sbjct: 466 GQIPKEIG---------ELQNLVFLDLYMNHFSGGLPYEISNITVLELLDVHNNYITGDI 516

Query: 328 PAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG 387
           PAQL  L  +  +DLS N+ +G+IP    N  LS      +         P         
Sbjct: 517 PAQLGNLVNLEQLDLSRNSFTGNIPLSFGN--LSYLNKLILNNNLLTGQIP--------- 565

Query: 388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA-LNLSHNNLTGTIPITFSN 446
                 ++++ L  ++ +DLS N L+GEIP ++G +T +   L+LS+N  TG IP TFS+
Sbjct: 566 ------KSIKNLQKLTLLDLSYNSLSGEIPQELGQVTSLTINLDLSYNTFTGNIPETFSD 619

Query: 447 LKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSY 502
           L Q++SLDLS N LHG I  L  LT+LA   ++ NN SG IP     F T    SY
Sbjct: 620 LTQLQSLDLSSNSLHGDIKVLGSLTSLASLNISCNNFSGPIPS-TPFFKTISTTSY 674

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  157 bits (398), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 134/440 (30%), Positives = 226/440 (51%), Gaps = 31/440 (7%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
           + L +L +  N L+ + P  + +L  L +L++  N L G +P  + N ++L+++D+S N 
Sbjct: 274 SELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNL 333

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQ--IPISLEPLSNLSKLKAFNGEIYLETESHYNS 198
           L+ SI SS +  L+ +EE ++S+N F   IP ++   S+L +L+    +I     S   +
Sbjct: 334 LSGSIPSS-IGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGT 392

Query: 199 LTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLAT 258
           LT   +LT       + +G+ P  L    DL+  DLS  +L+G  P+ L  +  L KL  
Sbjct: 393 LT---KLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLL 449

Query: 259 LDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLL 318
           +   +N   G IP EIG         N S      L +NR+ G IP+ I  L +I++L  
Sbjct: 450 I---SNSLSGFIPQEIG---------NCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDF 497

Query: 319 ANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAP 378
           ++N + G++P ++    E+++IDLS+N+L G +P  +  ++LS      V+        P
Sbjct: 498 SSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPV--SSLSGLQVLDVSANQFSGKIP 555

Query: 379 AL--SYFSPNGSPMGKE-------ETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIR-A 428
           A      S N   + K         ++ + + +  +DL  N+L+GEIP+++G +  +  A
Sbjct: 556 ASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIA 615

Query: 429 LNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIP 488
           LNLS N LTG IP   ++L ++  LDLS+N+L G +  L  +  L    ++YN+ SG +P
Sbjct: 616 LNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDLAPLANIENLVSLNISYNSFSGYLP 675

Query: 489 DRVAQFSTFEEDSYEGNPFL 508
           D    F        EGN  L
Sbjct: 676 DN-KLFRQLSPQDLEGNKKL 694

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 155/500 (31%), Positives = 244/500 (48%), Gaps = 48/500 (9%)

Query: 27  VSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDS----LLGAWQTTS 82
           +  L  +L+ LSLS + L+ N   + G   L  L  L +  N L  S    L     ++S
Sbjct: 110 IGSLHETLKQLSLSENLLHGNIPQELGL--LNRLVYLDLGSNRLNGSIPVQLFCNGSSSS 167

Query: 83  LQELNVASNKLTRNFPLGL-CELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQL 141
           LQ +++++N LT   PL   C L  LR L + +N L+G++P  L+N T+L+ +D+  N L
Sbjct: 168 LQYIDLSNNSLTGEIPLNYHCHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNML 227

Query: 142 TESISSSPLMLLTSIEELILSNNHF---QIPISLEPL-------SNLSKLKAFNGEIYLE 191
           +  + S  +  +  ++ L LS NHF       +LEP        S+L +L+     +  E
Sbjct: 228 SGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGE 287

Query: 192 TESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIH 251
             S    L+    L  I L   R  G+ P  + +  +L   +LS   LSG  P  L    
Sbjct: 288 ITSSVRHLS--VNLVQIHLDQNRIHGSIPPEISNLLNLTLLNLSSNLLSGPIPRELCK-- 343

Query: 252 CLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLP 311
            L KL  + +SNN   G IP+E+G         ++ R    D+S N L GSIP+    L 
Sbjct: 344 -LSKLERVYLSNNHLTGEIPMELG---------DIPRLGLLDVSRNNLSGSIPDSFGNLS 393

Query: 312 QISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPT 371
           Q+  LLL  N++ G +P  L +   + ++DLSHNNL+G IP  +V+   +   Y  ++  
Sbjct: 394 QLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSS- 452

Query: 372 WDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL 431
            +H S P          P+   +   +L+    +DLS N+L+G+IP Q+G    +  LNL
Sbjct: 453 -NHLSGPI---------PLELSKMDMVLS----VDLSSNELSGKIPPQLGSCIALEHLNL 498

Query: 432 SHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI-PQLIVLTTLAVFRVAYNNLSGKIPDR 490
           S N  + T+P +   L  ++ LD+S+N L G I P     +TL     ++N LSG + D+
Sbjct: 499 SRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSDK 558

Query: 491 VAQFSTFEEDSYEGNPFLYG 510
              FS    +S+ G+  L G
Sbjct: 559 -GSFSKLTIESFLGDSLLCG 577

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  156 bits (394), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 153/543 (28%), Positives = 253/543 (46%), Gaps = 69/543 (12%)

Query: 60  LQELYIRDNDLRDSLLGA--WQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDL 117
           L+ +Y+++N     +  A    +T LQ+L +  N+L    P  +  L+ L EL I +N+ 
Sbjct: 328 LESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNF 387

Query: 118 SGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSN 177
           +G++P  ++ L +L  LD+S N L   + +     L  +  ++LS+N F          N
Sbjct: 388 TGAIPPTISKLVNLLHLDLSKNNLEGEVPAC----LWRLNTMVLSHNSFS------SFEN 437

Query: 178 LSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRD------DGTFPKFLYH-QHDLK 230
            S+ +A   E+ L + S    +   + +  +S  G+ D       G+ P  + +    +K
Sbjct: 438 TSQEEALIEELDLNSNSFQGPI--PYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIK 495

Query: 231 NADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290
             +L   N SG  P+         +L +LDVS+N  +G  P  +         +N     
Sbjct: 496 ELNLGDNNFSGTLPDIFSKA---TELVSLDVSHNQLEGKFPKSL---------INCKALE 543

Query: 291 FNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQL--KEVRLIDLSHNNLS 348
             ++  N+++   P+W++ LP +  L L +N   G +  +   +  + +R+ID+SHNN S
Sbjct: 544 LVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFS 603

Query: 349 GHIP-FCLVN----TALSEGYYDAVAPTWDHASAPALSYFSP-----NGSPMGKEETVQI 398
           G +P +   N    T L+E     +   W +A     SY+        G  M  E   +I
Sbjct: 604 GTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYAD----SYYHEMEMVNKGVDMSFE---RI 656

Query: 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
                 ID S NK+ G IP  +GYL  +R LNLS N  T  IP   +NL ++E+LD+S N
Sbjct: 657 RRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRN 716

Query: 459 LLHGKIPQ-LIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSC 517
            L G+IPQ L  L+ L+    ++N L G +P R  QF   +  S+  NP LYG  L   C
Sbjct: 717 KLSGQIPQDLAALSFLSYMNFSHNLLQGPVP-RGTQFQRQKCSSFLDNPGLYG--LEDIC 773

Query: 518 DDNGLTTVTT---EAYTENEEGGSLIDMDSFLITFTVSYGIAIIG--IIGVLYVNPYWRR 572
            D G    T+   E  +E EE     +M ++ +   ++YG  ++   +IG  Y +     
Sbjct: 774 RDTGALNPTSQLPEDLSEAEE-----NMFNW-VAAAIAYGPGVLCGLVIGHFYTS--HNH 825

Query: 573 RWF 575
            WF
Sbjct: 826 EWF 828

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  151 bits (382), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 144/468 (30%), Positives = 214/468 (45%), Gaps = 54/468 (11%)

Query: 75  LGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVL 134
           +G    +S++ L +ASN L+ + P  L +L  L  L + NN LSG+L   L  L++L  L
Sbjct: 200 VGIGNCSSVEYLGLASNNLSGSIPQELFQLSNLSVLALQNNRLSGALSSKLGKLSNLGRL 259

Query: 135 DVSYNQLTESISSSPLMLLTSIEELILSNNHF--QIPISLEPLSNLSKLKAFN----GEI 188
           D+S N+ +  I     + L  +      +N F  ++P SL    ++S L   N    G+I
Sbjct: 260 DISSNKFSGKIPDV-FLELNKLWYFSAQSNLFNGEMPRSLSNSRSISLLSLRNNTLSGQI 318

Query: 189 YLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLM 248
           YL   +  N       LTS+ L+     G+ P  L +   LK  + + +    + P    
Sbjct: 319 YLNCSAMTN-------LTSLDLASNSFSGSIPSNLPNCLRLKTINFAKIKFIAQIPESFK 371

Query: 249 PI------------------------HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHL 284
                                     HC Q L TL ++ NF +  +P      +P L   
Sbjct: 372 NFQSLTSLSFSNSSIQNISSALEILQHC-QNLKTLVLTLNFQKEELP-----SVPSLQFK 425

Query: 285 NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSH 344
           NL       ++  +L+G++P W+   P +  L L+ N + G IP  L  L  +  +DLS+
Sbjct: 426 NLKVLI---IASCQLRGTVPQWLSNSPSLQLLDLSWNQLSGTIPPWLGSLNSLFYLDLSN 482

Query: 345 NNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSG 404
           N   G IP  L +        +AV        +P   +F    +  G  +  Q  +    
Sbjct: 483 NTFIGEIPHSLTSLQSLVSKENAV-----EEPSPDFPFFKKKNTNAGGLQYNQPSSFPPM 537

Query: 405 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI 464
           IDLS N L G I  + G L ++  LNL +NNL+G IP   S +  +E LDLS+N L G I
Sbjct: 538 IDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNI 597

Query: 465 -PQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQ 511
            P L+ L+ L+ F VAYN LSG IP  V QF TF   S+EGN  L G+
Sbjct: 598 PPSLVKLSFLSTFSVAYNKLSGPIPTGV-QFQTFPNSSFEGNQGLCGE 644

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  151 bits (382), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 142/447 (31%), Positives = 209/447 (46%), Gaps = 52/447 (11%)

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166
           L+ L +  N +SG  PL LTN+ SL+ LDVS N  +  I    +  L  +EEL L+NN  
Sbjct: 310 LQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPD-IGNLKRLEELKLANNSL 368

Query: 167 --QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT---PKF-----QLTSISLSGYRDD 216
             +IP+ ++   +L  L  F G          NSL    P+F      L  +SL      
Sbjct: 369 TGEIPVEIKQCGSLDVLD-FEG----------NSLKGQIPEFLGYMKALKVLSLGRNSFS 417

Query: 217 GTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGT 276
           G  P  + +   L+  +L   NL+G FP  LM    L  L+ LD+S N F G +PV I +
Sbjct: 418 GYVPSSMVNLQQLERLNLGENNLNGSFPVELM---ALTSLSELDLSGNRFSGAVPVSI-S 473

Query: 277 YLPGLMHLNLSRNAFN----------------DLSYNRLQGSIPNWIDRLPQISYLLLAN 320
            L  L  LNLS N F+                DLS   + G +P  +  LP +  + L  
Sbjct: 474 NLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQG 533

Query: 321 NYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIP--FCLVNTALSEGYYD-----AVAPTWD 373
           N   G +P     L  +R ++LS N+ SG IP  F  +   +S    D     ++ P   
Sbjct: 534 NNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIG 593

Query: 374 HASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 433
           + SA  +     N         +  L  +  +DL  N L+GEIP +I   + + +L+L H
Sbjct: 594 NCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDH 653

Query: 434 NNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVL--TTLAVFRVAYNNLSGKIPDRV 491
           N+L+G IP +FS L  +  +DLS N L G+IP  + L  + L  F V+ NNL G+IP  +
Sbjct: 654 NHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASL 713

Query: 492 AQFSTFEEDSYEGNPFLYGQPLSKSCD 518
                     + GN  L G+PL++ C+
Sbjct: 714 GS-RINNTSEFSGNTELCGKPLNRRCE 739

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  151 bits (381), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 146/466 (31%), Positives = 222/466 (47%), Gaps = 74/466 (15%)

Query: 82  SLQELNVASNKLTRNF-PLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
           SLQ LN+ +NKL+ +F    + +L  +  LY+  N++SGS+P+ LTN ++L+VLD+S N+
Sbjct: 327 SLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPISLTNCSNLRVLDLSSNE 386

Query: 141 LTESISSSPLMLLTS--IEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNS 198
            T  + S    L +S  +E+L+++NN+    + +E    L K K+         +  +N+
Sbjct: 387 FTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVE----LGKCKSLK-----TIDLSFNA 437

Query: 199 LTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQ--KL 256
           LT                G  PK ++    L +  +   NL+G  P  +    C+    L
Sbjct: 438 LT----------------GLIPKEIWTLPKLSDLVMWANNLTGGIPESI----CVDGGNL 477

Query: 257 ATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYL 316
            TL ++NN   G +P  I            +   +  LS N L G IP  I +L +++ L
Sbjct: 478 ETLILNNNLLTGSLPESIS---------KCTNMLWISLSSNLLTGEIPVGIGKLEKLAIL 528

Query: 317 LLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTA----------------L 360
            L NN + G IP++L   K +  +DL+ NNL+G++P  L + A                 
Sbjct: 529 QLGNNSLTGNIPSELGNCKNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVR 588

Query: 361 SEGYYDAVAP----TWDHASAPALSYFSPNGSPMGKEETVQILT--------SMSGIDLS 408
           +EG  D         ++   A  L +F P      K      +T        SM  +DLS
Sbjct: 589 NEGGTDCRGAGGLVEFEGIRAERLEHF-PMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLS 647

Query: 409 CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QL 467
            N ++G IP   G +  ++ LNL HN LTGTIP +F  LK I  LDLS+N L G +P  L
Sbjct: 648 YNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSL 707

Query: 468 IVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPL 513
             L+ L+   V+ NNL+G IP    Q +TF    Y  N  L G PL
Sbjct: 708 GGLSFLSDLDVSNNNLTGPIP-FGGQLTTFPLTRYANNSGLCGVPL 752

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  151 bits (381), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 164/546 (30%), Positives = 244/546 (44%), Gaps = 64/546 (11%)

Query: 57  LVHLQELYIRDN----DLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYI 112
           L  LQ L + +N    ++ D L GA  T  L  L+++ N      P       LL  L +
Sbjct: 290 LKSLQYLSLAENKFTGEIPDFLSGACDT--LTGLDLSGNHFYGAVPPFFGSCSLLESLAL 347

Query: 113 DNNDLSGSLPL-CLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPIS 171
            +N+ SG LP+  L  +  L+VLD+S+N+ +  +  S   L  S+  L LS+N+F  PI 
Sbjct: 348 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI- 406

Query: 172 LEPLSNLSK-LKAFNGEIYLETESHYNSLTPKF----QLTSISLSGYRDDGTFPKFLYHQ 226
              L NL +  K    E+YL+       + P      +L S+ LS     GT P  L   
Sbjct: 407 ---LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 463

Query: 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNL 286
             L++  L    L GE P  LM +  L+   TL +  N   G IP    + L    +LN 
Sbjct: 464 SKLRDLKLWLNMLEGEIPQELMYVKTLE---TLILDFNDLTGEIP----SGLSNCTNLN- 515

Query: 287 SRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNN 346
               +  LS NRL G IP WI RL  ++ L L+NN   G IPA+L   + +  +DL+ N 
Sbjct: 516 ----WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 571

Query: 347 LSGHIPFCL--------VNTALSEGYY----DAVAPTWDHASAPALSYFSPNGSPMGKEE 394
            +G IP  +         N    + Y     D +     H +   L +       + +  
Sbjct: 572 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLS 630

Query: 395 TVQILT------------------SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNL 436
           T                       SM  +D+S N L+G IP +IG +  +  LNL HN++
Sbjct: 631 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 690

Query: 437 TGTIPITFSNLKQIESLDLSYNLLHGKIPQLI-VLTTLAVFRVAYNNLSGKIPDRVAQFS 495
           +G+IP    +L+ +  LDLS N L G+IPQ +  LT L    ++ NNLSG IP+ + QF 
Sbjct: 691 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFE 749

Query: 496 TFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDS--FLITFTVSY 553
           TF    +  NP L G PL + CD +          +      SL    +   L +F   +
Sbjct: 750 TFPPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSHGRRPASLAGSVAMGLLFSFVCIF 808

Query: 554 GIAIIG 559
           G+ ++G
Sbjct: 809 GLILVG 814

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  150 bits (378), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 153/537 (28%), Positives = 236/537 (43%), Gaps = 110/537 (20%)

Query: 83  LQELNVASNKLTRNF-PLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQL 141
           LQ LN+ +N L+ +F    + ++  +  LY+  N++SGS+P+ LTN ++L+VLD+S N  
Sbjct: 328 LQNLNLGNNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGF 387

Query: 142 TESISSSPLMLLTS--IEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSL 199
           T ++ S    L +S  +E+++++NN+    + +E    L K K+                
Sbjct: 388 TGNVPSGFCSLQSSPVLEKILIANNYLSGTVPME----LGKCKS---------------- 427

Query: 200 TPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQ--KLA 257
                L +I LS     G  PK ++   +L +  +   NL+G  P  +    C++   L 
Sbjct: 428 -----LKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGV----CVKGGNLE 478

Query: 258 TLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLL 317
           TL ++NN   G IP  I            +   +  LS NRL G IP+ I  L +++ L 
Sbjct: 479 TLILNNNLLTGSIPESIS---------RCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQ 529

Query: 318 LANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTA----------------LS 361
           L NN + G +P QL   K +  +DL+ NNL+G +P  L + A                 +
Sbjct: 530 LGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRN 589

Query: 362 EGYYDAVA------------------------PTWDHASAPALSYFSPNGSPMGKEETVQ 397
           EG  D                           P     S   +  FS NG          
Sbjct: 590 EGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANG---------- 639

Query: 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
              SM   D+S N ++G IP   G +  ++ LNL HN +TGTIP +F  LK I  LDLS+
Sbjct: 640 ---SMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSH 696

Query: 458 NLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKS 516
           N L G +P  L  L+ L+   V+ NNL+G IP    Q +TF    Y  N  L G PL + 
Sbjct: 697 NNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFG-GQLTTFPVSRYANNSGLCGVPL-RP 754

Query: 517 CDDNGLTTVTTEAYTENEEGGSLIDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRR 573
           C       +T+  + + +            +   V  GIA   +  V+ V   +R R
Sbjct: 755 CGSAPRRPITSRIHAKKQT-----------VATAVIAGIAFSFMCFVMLVMALYRVR 800

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	603
224120284	929	predicted protein [Populus trichocarpa]	0.900	0.584	0.396	1e-107
224144186	973	predicted protein [Populus trichocarpa]	0.936	0.580	0.387	1e-107
224102049	577	predicted protein [Populus trichocarpa]	0.814	0.850	0.426	1e-106
224120450	935	predicted protein [Populus trichocarpa]	0.865	0.558	0.391	1e-98
224106950	863	predicted protein [Populus trichocarpa]	0.895	0.625	0.384	4e-98
224111186	960	predicted protein [Populus trichocarpa]	0.927	0.582	0.384	7e-98
224112249	806	predicted protein [Populus trichocarpa]	0.819	0.612	0.391	4e-95
224106948	658	predicted protein [Populus trichocarpa]	0.885	0.811	0.378	1e-92
224142721	926	predicted protein [Populus trichocarpa]	0.951	0.619	0.389	3e-91
224113693	949	predicted protein [Populus trichocarpa]	0.920	0.584	0.366	5e-90

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 263/663 (39%), Positives = 346/663 (52%), Gaps = 120/663 (18%)

Query: 46  KNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVASNKLTRNFPL--GLC 102
           + TIL Q    L +L +L +  + L +S L    + T+L  L +   +L+ + P+  GLC
Sbjct: 274 EGTILAQALPSLKNLHKLDLSSSTLDNSFLQTIGRITTLTSLKLNGCRLSGSIPIAEGLC 333

Query: 103 ELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILS 162
           EL  L+ L I NN L+G LP CL NLTSL+ +D+S N     ISSSPL+ LTSI+EL LS
Sbjct: 334 ELKHLQSLDISNNSLTGVLPKCLANLTSLKQIDLSSNHFGGDISSSPLITLTSIQELRLS 393

Query: 163 NNHFQIPISLEPLSNLSKLKAF---NGEIYLETESHYNSLTPKFQLTSISLSGYRDDGT- 218
           +N+FQIPISL   SN S+LK F   N EI  E E H  +L PKFQL  + LSG    G  
Sbjct: 394 DNNFQIPISLRSFSNHSELKFFFGYNNEICAELEEH--NLIPKFQLQRLHLSGQAYGGAL 451

Query: 219 -FPKFLYHQHDLKNADLSHLNLSGEFPNWL----------------------MPIHCLQK 255
            FPKFL++QH+L+    S++ + G  PNWL                      +PIH    
Sbjct: 452 PFPKFLFYQHNLREIYFSNMRMRGGVPNWLLENNTNLHELFLVNNSLSGPFQLPIHPHVS 511

Query: 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFND---------------------- 293
           L+ LD+S+N    HIP EIG Y P L  L++S+N FN                       
Sbjct: 512 LSQLDISDNHLDSHIPTEIGAYFPSLTFLSMSKNHFNGIIPSSFGYMSSLLVLDLSENNI 571

Query: 294 -----------------LSYNRLQGS------------------------IPNWIDRLPQ 312
                            LS N+LQGS                        I  WI     
Sbjct: 572 SGKLPSCFSSLPLVHVYLSQNKLQGSLEDAFHKSFELITLDLSHNQLTGNISEWIGEFSH 631

Query: 313 ISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCL--------VNTALSEGY 364
           +SYLLL  N +EG IP QLC+L ++  IDLSHN  SGHI  CL         N  +    
Sbjct: 632 MSYLLLGYNNLEGRIPNQLCKLDKLSFIDLSHNKFSGHILPCLRFRSSIWYSNLRIYPDR 691

Query: 365 YDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLT 424
           Y    P     +  ++SY  P          + IL  MSG+DLSCN LTGEIP +IG L 
Sbjct: 692 YLIREPL--EITTKSVSYSYP----------ISILNIMSGMDLSCNNLTGEIPPEIGNLN 739

Query: 425 RIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ-LIVLTTLAVFRVAYNNL 483
            I  LNLS+N L G IP TFSNL ++ESLDLS N L G IP  L+ L  L VF VA+NNL
Sbjct: 740 HIHVLNLSNNFLIGPIPQTFSNLSEVESLDLSNNSLTGAIPPGLVQLHYLEVFSVAHNNL 799

Query: 484 SGKI-PDRVAQFSTFEEDSYEGNPFLYGQPLSKSC---DDNGLTTVTTEAYTENEEGGSL 539
           SG+  P+ + QFSTF E SYEGNP L G PLS+ C   ++   +++     T++ E    
Sbjct: 800 SGRTPPNMIPQFSTFNESSYEGNPLLCGPPLSRHCTTQEEEEASSLPKRTSTDDIEESGF 859

Query: 540 IDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCYYFVGDNLILKRFY 599
           +D D F ++F V+Y + ++    +LY+NP WRR WFY ++  + +CYYF  DNL +  + 
Sbjct: 860 MDTDVFYVSFVVTYIMMLLVTAAILYINPNWRRAWFYFIKQSINNCYYFFVDNLHMPSWL 919

Query: 600 RGR 602
             R
Sbjct: 920 EVR 922

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144186|ref|XP_002336117.1| predicted protein [Populus trichocarpa] gi|222873047|gb|EEF10178.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 276/712 (38%), Positives = 368/712 (51%), Gaps = 147/712 (20%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
           F   KNL++L  D     +N S  Q + E M SL+ L L    LN      QGF  L +L
Sbjct: 292 FLYLKNLKYL--DLSYNTLNNSIFQAI-ETMTSLKTLKLKGCGLNGQISSTQGFLNLKNL 348

Query: 61  QELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLTRNFPL--GLCELVLLRELYIDNNDL 117
           + L + DN L +++L + +  TSL+ L + S +L    P   GLC+L  L+ELY+ +NDL
Sbjct: 349 EYLDLSDNTLDNNILQSIRAMTSLKTLGLQSCRLNGRIPTTQGLCDLNHLQELYMSDNDL 408

Query: 118 SGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSN 177
           SG LPLCL NLTSLQ                         +L LS+NH +IP+SL P  N
Sbjct: 409 SGFLPLCLANLTSLQ-------------------------QLSLSSNHLKIPMSLSPFHN 443

Query: 178 LSKLKAFNG---EIYLETESHYNSLTPKFQLTSISLSGY-RDDGTFPKFLYHQHDLKNAD 233
           LSKLK F+G   EI+ E +    +++ KFQL  + LS   +  G FP+FLYHQ  L+  D
Sbjct: 444 LSKLKYFDGSGNEIFAEEDDR--NMSSKFQLEYLYLSSRGQGAGAFPRFLYHQFSLRYLD 501

Query: 234 LSHLNLSGEFPNW----------------------LMPIHCLQKLATLDVSNNFFQGHIP 271
           L+++ + GEFP+W                      L+P +    L+ L +S N F+G IP
Sbjct: 502 LTNIQIKGEFPSWLIENNTYLQELHLENCSLSGPFLLPKNSHVNLSFLSISMNHFRGQIP 561

Query: 272 VEIGTYLPGLMHLNLSRNAFN----------------DLSYNRLQGSIPNWI-------- 307
            EIG +LPGL  L +S N FN                DLS N LQG IP WI        
Sbjct: 562 SEIGAHLPGLEVLFMSDNGFNGSIPFSLGNISSLQWLDLSNNILQGQIPGWIGNMSSLEF 621

Query: 308 ---------DRLP-------QISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHI 351
                     R P        + Y+ L+ N ++G I      L E+  +DLSHNNL+G I
Sbjct: 622 LDLSGNNFSGRFPPRFSTSSNLRYVYLSRNKLQGPITMTFYDLAEIFALDLSHNNLTGTI 681

Query: 352 P----------FCLVNTALSEGYYDAVAPTWDHASAPALSY------------------- 382
           P          F L++    EG         D  +   LS+                   
Sbjct: 682 PEWIDRLSNLRFLLLSYNNLEGEIPIQLSRLDRLTLIDLSHNHLSGNILYWMISTHSFPQ 741

Query: 383 -FSPNGSPMGKEETVQILTS-------------MSGIDLSCNKLTGEIPTQIGYLTRIRA 428
            ++   S    +++ +  T               +GID SCN  TGEIP +IG L+ I+ 
Sbjct: 742 LYNSRDSLSSSQQSFEFTTKNVSLSYRGIIIWYFTGIDFSCNNFTGEIPPEIGNLSMIKV 801

Query: 429 LNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI-PQLIVLTTLAVFRVAYNNLSGKI 487
           LNLSHNNLTG IP TF NLK+IESLDLSYN L G+I P+L  L +L VF VA+NNLSGK 
Sbjct: 802 LNLSHNNLTGPIPPTFWNLKEIESLDLSYNKLDGEIPPRLTELFSLEVFIVAHNNLSGKT 861

Query: 488 PDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDSFLI 547
           P RVAQF+TF+E  Y+ NPFL G+PLSK C   G+    +   T NE+ G  +DM  F +
Sbjct: 862 PARVAQFATFDESCYKDNPFLCGEPLSKIC---GVAMPPSPTSTNNEDNGGFMDMKVFYV 918

Query: 548 TFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCYYFVGDNL-ILKRF 598
           TF V+Y + ++ I  VLY+NPYWRR WFY +EV + +CYYF+ DN  IL +F
Sbjct: 919 TFWVAYIMVLLVIGAVLYINPYWRRGWFYFIEVSINNCYYFLVDNFPILSKF 970

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102049|ref|XP_002334215.1| predicted protein [Populus trichocarpa] gi|222870030|gb|EEF07161.1| predicted protein [Populus trichocarpa]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/575 (42%), Positives = 328/575 (57%), Gaps = 84/575 (14%)

Query: 101 LCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELI 160
           LCEL  L+EL I  N+++GSLP C +NLT+LQ LD+S+N  T +IS SP+  LTSI +L 
Sbjct: 7   LCELKQLQELDISYNNITGSLPSCFSNLTNLQALDISFNHFTGNISLSPIGSLTSIRDLN 66

Query: 161 LSNNHFQIPISLEPLSNLSKLKAFNG---EIYLETESHYNSLTPKFQLTSISLSGYRDDG 217
           LS+NHFQIPISL P  NLS LK  NG   E+Y  TE  +N L P+FQL  +SL+     G
Sbjct: 67  LSDNHFQIPISLGPFFNLSNLKNLNGDRNELYESTELVHN-LIPRFQLQRLSLAYTGSGG 125

Query: 218 TFPKFLYHQHDLKNADLSHLNLSGEFPNWL----------------------MPIHCLQK 255
           TF K LY+QHDL+  DLSH+ ++GEFP+WL                      +  H L +
Sbjct: 126 TFLKSLYYQHDLQFVDLSHIKMTGEFPSWLLQNNTKLEELYLVNNSFSGSFQLANHSLDR 185

Query: 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN----------------DLSYNRL 299
           L+ LD+S N     IP EIG   P L+ LNLSRN F                 DLS N L
Sbjct: 186 LSHLDISRNHIHNQIPTEIGACFPRLVFLNLSRNDFGGSIPSSISNMSSLEILDLSNNEL 245

Query: 300 QGSIP-NWIDRLPQISYLLLANNYIEGE------------------------IPAQLCQL 334
            G+IP + ++    +  L+L+NN+++G+                        +P  L   
Sbjct: 246 SGNIPEHLVEDCLSLRGLVLSNNHLKGQFFWRNFNLAYLTDLILSGNQLTGILPNSLSNG 305

Query: 335 KEVRLIDLSHNNLSGHIPFCLVNTA------LSE-GYYDAVAPTWDHASAPALSYFSPNG 387
             +  +D+S NNLSG IP  + N +      LSE   + ++  ++  +      Y S N 
Sbjct: 306 SRLEALDVSLNNLSGKIPRWIRNMSSLEYLDLSENNLFGSLPSSFCSSMMMTEVYLSKNK 365

Query: 388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNL 447
                 +      S++ +DLS N LTGEIP ++GYL  I+ LNLSHN+LTG IP TFSNL
Sbjct: 366 LEGSLIDAFDGCLSLNKLDLSHNSLTGEIPFKLGYLGNIQVLNLSHNSLTGPIPPTFSNL 425

Query: 448 KQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNP 506
           K+IESLD+SYN L+G+IP QL+ L +L+ F VAYNNLSGK P+R AQF+TF   SYEGNP
Sbjct: 426 KKIESLDISYNNLNGEIPYQLVDLDSLSAFSVAYNNLSGKTPERAAQFATFNRSSYEGNP 485

Query: 507 FLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDSFLITFTVSYGIAIIGIIGVLYV 566
            L G PL+ +C        T E           IDM +F +TF+V+Y I ++ I  VLY+
Sbjct: 486 LLCGPPLTNNC--------TGEILPSPLSSYGFIDMQAFYVTFSVAYIINLLAIGAVLYI 537

Query: 567 NPYWRRRWFYLVEVCMTSCYYFVGDNL-ILKRFYR 600
           NP+WRR WFY +   + +CYYF+ DNL +  RF R
Sbjct: 538 NPHWRRAWFYFIRESINNCYYFLVDNLHVPARFRR 572

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120450|ref|XP_002331051.1| predicted protein [Populus trichocarpa] gi|222872981|gb|EEF10112.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 264/674 (39%), Positives = 340/674 (50%), Gaps = 152/674 (22%)

Query: 33  SLRLLSLSYSRLNKN--TILDQGFCQLVHLQELYIRDNDLRDSLL-GAWQTTSLQELNVA 89
           +LR L+L  + L  +  T LD+    L +L++L +  + + +S L    + T+L+ L + 
Sbjct: 306 NLRTLNLDENNLEGSFGTTLDKDLASLKNLEKLDLSFSTVDNSFLQTVGKITTLKSLRLR 365

Query: 90  SNKLTRNFPL--GLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISS 147
             +L  + P   GLC+L  L+ L I  NDLSG+LP CL NLTSLQ LD+SYN     IS 
Sbjct: 366 GCRLNGSIPKAQGLCQLKHLQNLDISGNDLSGALPRCLANLTSLQGLDLSYNNFIGDISF 425

Query: 148 SPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTS 207
           S L +    EE                                E E H  +L PKFQL  
Sbjct: 426 SLLQVSHPSEE--------------------------------ELEEH--NLAPKFQLER 451

Query: 208 ISLSG--YRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLM----------------- 248
           + LSG  Y    +FPKFL HQ+ L+  D S+L L G FP WL+                 
Sbjct: 452 LGLSGNGYGGAFSFPKFLLHQYSLQEIDFSNLKLRGGFPIWLLENNTHLNELHLVNNSLS 511

Query: 249 -----PIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGL---------------------- 281
                PIH  Q L+ LD+SNN F+ HIP EIG+Y P L                      
Sbjct: 512 GTFQLPIHPHQNLSELDISNNNFESHIPREIGSYFPSLTFLSMSDNHFSGRVPSSFDFLL 571

Query: 282 -------------------------MHLNLSRN--------AFN--------DLSYNRLQ 300
                                    +H+ LSRN        AF         DLS+N L 
Sbjct: 572 YLQVFDLSNNNISGTLPSFFNSSNLLHVYLSRNMLQGSLEHAFQKSFELITLDLSHNHLT 631

Query: 301 GSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTA- 359
           GSIP WI    Q+S+LLL  N + G IP QLC+L E+  IDLSHNN SGHI  CL   + 
Sbjct: 632 GSIPKWIGEFSQLSFLLLGYNNLYGSIPTQLCKLNELSFIDLSHNNFSGHILPCLRFKSS 691

Query: 360 ----LSEGY---YDAVAPTWDHASAPALSY-FSPNGSPMGKEETVQILTSMSGIDLSCNK 411
               L E Y   Y    P     +  ++SY +SP+           IL  M+G+DLSCN 
Sbjct: 692 IWFILREEYPSEYSLREPLV--IATKSVSYPYSPS-----------ILYYMTGMDLSCNS 738

Query: 412 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI-PQLIVL 470
           L+G IP +IG L  I  LNLS+N+L G IP T SNL ++ESLDLS N L+G+I PQL+ L
Sbjct: 739 LSGAIPPEIGNLNHIHVLNLSNNHLIGPIPQTLSNLSEVESLDLSNNSLNGEIPPQLVQL 798

Query: 471 TTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAY 530
            +LA F VA NNLSGK P+ VAQFSTF + SYEGNP L G PL  SC             
Sbjct: 799 HSLAYFSVANNNLSGKTPEMVAQFSTFSKSSYEGNPLLCGPPLLNSCTKEVPPPPPPGPS 858

Query: 531 T-ENEEGGSLIDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCYYFV 589
           T E EE   +ID   F ++F V+Y + ++GI  VLY+NP WRR WF  +E  + +CYYFV
Sbjct: 859 TDEKEESSVIIDAQVFCVSFVVTYIMVLLGIAAVLYMNPDWRRAWFNFIEKSINTCYYFV 918

Query: 590 GDNLILKRFYRGRV 603
            DNL+  + +R RV
Sbjct: 919 VDNLL--KPFRIRV 930

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106950|ref|XP_002333589.1| predicted protein [Populus trichocarpa] gi|222837497|gb|EEE75876.1| predicted protein [Populus trichocarpa]

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 263/684 (38%), Positives = 357/684 (52%), Gaps = 144/684 (21%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
           F + KNLE+L  D     +N S  Q +   M SLR L L   RL+      QGF  L +L
Sbjct: 211 FLDLKNLEYL--DLSYNTLNNSIFQAIGT-MTSLRTLILHSCRLDGRIPTTQGFFNLKNL 267

Query: 61  QELYIRDNDLRDSLLGAWQTT-SLQELNVASNKLTRNFPL--GLCELVLLRELYIDNNDL 117
           + L +  N L +++L   +T  SL+ L + +  L    P   GLC+L  L+ELY+++NDL
Sbjct: 268 EFLDLSSNTLSNNILQTIRTMPSLKTLWLQNCSLNGQLPTTQGLCDLNHLQELYMNDNDL 327

Query: 118 SGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSN 177
           SG LP CL N+TSLQ                          L LS+NH +IP+SL PL N
Sbjct: 328 SGFLPPCLANMTSLQ-------------------------RLYLSSNHLKIPMSLSPLYN 362

Query: 178 LSKLKAFNG---EIYLETESHYNSLTPKFQLTSISLS-GYRDDGTFPKFLYHQHDLKNAD 233
           LSKLK+F G   EIY E + H  +LTPKFQL S+SLS G ++   FPKFLYHQ  L++ D
Sbjct: 363 LSKLKSFYGSGNEIYAEEDDH--NLTPKFQLESLSLSNGGQNTRAFPKFLYHQFSLQSLD 420

Query: 234 LSHLNLSGEFPNWLMPIHCLQKLATLD----------------------VSNNFFQGHIP 271
           L+++ + GEFPNWL+  +   KL +L+                      +S N FQG IP
Sbjct: 421 LTNIQIKGEFPNWLIENNTYLKLLSLENCSLSGPFLLPKSSHVNLSFLSISMNHFQGQIP 480

Query: 272 VEIGTYLPGLMHLNLSRNAFN----------------DLSYNRLQGSIPNWIDRLPQISY 315
            EIG +  GL  L +S N FN                DLS N LQG IP WI  +  + +
Sbjct: 481 SEIGAHFSGLEVLLMSDNGFNGSIPSSLGNMSLMYELDLSNNSLQGQIPGWIGNMSSLEF 540

Query: 316 LLLANNYIEGEIPAQL---CQLKEVRL---------------------IDLSHNNLSGHI 351
           L L+ N + G +P +     +L++V L                     +DLSHN+L+G I
Sbjct: 541 LDLSRNNLSGPLPPRFGTSSKLRDVFLSRNRLQGPIAMAFSDSSEIFALDLSHNDLTGRI 600

Query: 352 P--------------------------FC----LVNTALSEGYYDAVAPTWDHASAPAL- 380
           P                           C    L    LS  Y      +W  ++ P   
Sbjct: 601 PEWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTVIDLSHNYLSGNILSWMISTHPFPI 660

Query: 381 ---SYFSPNGSPMGKEETVQ---------ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA 428
              S++S   S    E T++         I+  ++GID SCN  TGEIP +IG L +I+A
Sbjct: 661 QYNSHYSMFSSQQSFEFTIKNVSFPYKGSIIQYLTGIDFSCNNFTGEIPPEIGNLNKIKA 720

Query: 429 LNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI-PQLIVLTTLAVFRVAYNNLSGKI 487
           LNLSHN+LTG I  TFSNLK+IESLDLSYN L G+I P+LI L +L  F V +NNLSGK 
Sbjct: 721 LNLSHNSLTGPIQSTFSNLKEIESLDLSYNKLDGEIPPRLIELFSLEFFSVTHNNLSGKT 780

Query: 488 PDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDSFLI 547
           P RVAQF+TFEE  Y+ N FL G+PL+K C    + + +T     NE+ G  +D++ F +
Sbjct: 781 PARVAQFATFEESCYKDNLFLCGEPLTKICGA-AMPSSSTPTSRNNEDDGGFMDIEIFYV 839

Query: 548 TFTVSYGIAIIGIIGVLYVNPYWR 571
           +F V+Y + ++ I  VL++NPYWR
Sbjct: 840 SFGVAYIMVLLVIGAVLHINPYWR 863

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111186|ref|XP_002332969.1| predicted protein [Populus trichocarpa] gi|222834328|gb|EEE72805.1| predicted protein [Populus trichocarpa]

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 264/686 (38%), Positives = 362/686 (52%), Gaps = 127/686 (18%)

Query: 23  FLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTS 82
           FLQ +  L  SL+ LSL  + L++ T+ +    + +HL    +  N L++  +GA    +
Sbjct: 271 FLQSLCSL-PSLKTLSLKDTNLSQGTLFNSSTLEELHLDNTSLPINFLQN--IGA--LPA 325

Query: 83  LQELNVASNKLTRNFPL-GLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQL 141
           L+ L+V    L    P  G CEL  L++L++  N+L GSLP CL N++SLQ+LDVS NQ 
Sbjct: 326 LKVLSVGECDLHGTLPAQGWCELKNLKQLHLSRNNLGGSLPDCLGNMSSLQLLDVSENQF 385

Query: 142 TESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI-YLETE-SHYNSL 199
           T +I+  PL  L S+E L LSNN F++PIS++P  N S LK F+ E   L TE + +++L
Sbjct: 386 TGNIAFGPLTNLISLEFLSLSNNLFEVPISIKPFMNHSSLKFFSSENNKLVTEPAAFDNL 445

Query: 200 TPKFQLTSISLSGYRDD---GTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMP------- 249
            PKFQL    LS           P FLY+Q DL+  DLSH N++G FP+WL+        
Sbjct: 446 IPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLLKNNTRLEQ 505

Query: 250 --------IHCLQ-------KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN----- 289
                   I  LQ        +  LD+SNN   G IP +I    P L  L +++N     
Sbjct: 506 LYLSDNSFIGALQLQDHLHPNMTNLDISNNNMNGQIPKDICLIFPNLHTLRMAKNGFTGC 565

Query: 290 -----------AFNDLSYNRLQ-------------------------------------- 300
                      +F DLS N+L                                       
Sbjct: 566 IPSCLGNISSLSFLDLSNNQLSTVKLEQLTTIWVLKLSNNNLGGKIPTSVFNSSRLNFLY 625

Query: 301 -------GSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPF 353
                  GSIPNWI  L  +S LLL  N+ +GE+P QLC L+++ ++D+S N LSG IP 
Sbjct: 626 LNDNSFTGSIPNWIGNLSSLSVLLLKANHFDGELPVQLCLLEQLSILDVSENQLSGPIPS 685

Query: 354 CLVNT--------------------ALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKE 393
           CL N                     ++   YY+ + P   ++       F  N + + + 
Sbjct: 686 CLGNLTFMASSQKAFVDLNVDFGSWSIERAYYETMGPPLVNSMYSLRKDFMVNFTEVIEF 745

Query: 394 ETV--------QILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFS 445
            T         +IL  MSGIDLS N     IP + G L+ + +LNLSHNNLTG++P TFS
Sbjct: 746 TTKNMYYCYKGKILGYMSGIDLSNNNFVEAIPPEFGNLSELLSLNLSHNNLTGSVPATFS 805

Query: 446 NLKQIESLDLSYNLLHGKI-PQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEG 504
           NLKQIESLDLSYN L+G I PQL  +T L VF VA+NNLSGK P+R  QF TF+E  YEG
Sbjct: 806 NLKQIESLDLSYNNLNGVIPPQLTEITMLEVFSVAHNNLSGKTPERKFQFGTFDESCYEG 865

Query: 505 NPFLYGQPLSKSCDDNGLTTVTTEAYTENEEG-GSLIDMDSFLITFTVSYGIAIIGIIGV 563
           NPFL G PL  +C +     V+++   ++E+G    ID+D F I+F V Y + ++ I  V
Sbjct: 866 NPFLCGPPLRNNCSEEA---VSSQLVPDDEQGDDGFIDIDFFYISFGVCYTVVVMTIAIV 922

Query: 564 LYVNPYWRRRWFYLVEVCMTSCYYFV 589
           LY+NPYWRRRW Y +E C+ +CYYFV
Sbjct: 923 LYINPYWRRRWLYFIEDCIDTCYYFV 948

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112249|ref|XP_002332816.1| predicted protein [Populus trichocarpa] gi|222833210|gb|EEE71687.1| predicted protein [Populus trichocarpa]

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 255/651 (39%), Positives = 334/651 (51%), Gaps = 157/651 (24%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
           F + KNLE+L  D     +N S  Q +   M S ++L L    LN      QGF    +L
Sbjct: 233 FLDLKNLEYL--DLSYSTLNNSIFQTI-RTMTSFKILKLEDCSLNGQIPTTQGFLNPKNL 289

Query: 61  QELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLTRNFPL--GLCELVLLRELYIDNNDL 117
           + L +  N L +++L + +T TSL+ L + S KL    P   GLC+L  L+EL + +NDL
Sbjct: 290 EYLDLSSNTLDNNILQSIETMTSLKTLILGSCKLDGQIPTAQGLCDLNHLQELDMSDNDL 349

Query: 118 SGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSN 177
           SG LP CLTNLTSLQ                         +L LS+NHF+IP+SL PL N
Sbjct: 350 SGVLPSCLTNLTSLQ-------------------------QLYLSSNHFKIPMSLSPLYN 384

Query: 178 LSKLKAF---NGEIYLETESHYNSLTPKFQLTSISLSGY-RDDGTFPKFLYHQHDLKNAD 233
           LSK+K+F     EI+ E + H  +L+PKFQL S+ L G  +D G  PKF YHQ  L+  D
Sbjct: 385 LSKIKSFYSSGNEIFAEEDDH--NLSPKFQLESLYLRGRGQDAGALPKFFYHQFSLQFLD 442

Query: 234 LSHLNLSGEFPNWL----------------------MPIHCLQKLATLDVSNNFFQGHIP 271
           L+++ + GEF NWL                      +P +    L+ L +S N FQG IP
Sbjct: 443 LANIQIKGEFSNWLIENNTYLQRLYLENCSLSGPFLLPKNSHVNLSFLRISMNHFQGQIP 502

Query: 272 VEIGTYLPGLMHLNLSRNAFN--------------------------------------- 292
           ++IG  LPGL  L +S N FN                                       
Sbjct: 503 LKIGDRLPGLEVLKMSDNGFNGSIPYSLFELDLSNNLLTGRILSNNKISSKDRSQWHFMT 562

Query: 293 -------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
                  DLS+N L G+I  WIDRL  + +LLL+ N +EGEIP QL +L ++ LIDLSHN
Sbjct: 563 HPEILALDLSHNNLTGTIQEWIDRLSNLRFLLLSYNNLEGEIPIQLSRLDQLTLIDLSHN 622

Query: 346 NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
           +LSG                D +   W         YF                     I
Sbjct: 623 HLSG----------------DNI---W---------YF-------------------IRI 635

Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNN---LTGTIPITFSNLKQIESLDLSYNLLHG 462
           D SCN  TG+IP +IG L+ I+ALNLSHN    +  TIP TF NLK+IESLDLSYN L G
Sbjct: 636 DFSCNNFTGKIPPKIGNLSMIKALNLSHNICYLVCITIPPTFWNLKEIESLDLSYNKLDG 695

Query: 463 KI-PQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNG 521
           +I P+L  L +L VF VA+NN SGK P RVAQF+TFE   Y+ NPFL G+PL K C    
Sbjct: 696 EIPPRLTELFSLEVFSVAHNNFSGKTPARVAQFATFEASCYKDNPFLCGEPLPKICGA-A 754

Query: 522 LTTVTTEAYTENEEGGSLIDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRR 572
           +    T   T NE+ G  IDM+ F +TF V+Y + ++ I   L++NPYWR+
Sbjct: 755 MPPSQTPTSTNNEDNGGFIDMEVFYVTFWVAYIMVLLVIGAFLHINPYWRQ 805

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106948|ref|XP_002333588.1| predicted protein [Populus trichocarpa] gi|222837496|gb|EEE75875.1| predicted protein [Populus trichocarpa]

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 261/689 (37%), Positives = 355/689 (51%), Gaps = 155/689 (22%)

Query: 31  MASLRLLSLSYSRLNKNTILDQ-GFCQLVHLQELYIRDNDLRDSLLGAWQTT-SLQELNV 88
           M SLR L L   R++      Q GF  L +L+ L +  N L +++L   +T  SL+ L +
Sbjct: 1   MTSLRTLILQSCRIDGQIPTTQVGFFNLKNLEFLDLSSNTLSNNILQTIRTMPSLKTLWL 60

Query: 89  ASNKLTRNFPL--GLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESIS 146
            +  L    P   GLC+L  L+ELY+ +NDL G LP CL N+TSLQ              
Sbjct: 61  QNCSLNGQLPTTQGLCDLNHLQELYMYDNDLIGFLPPCLANMTSLQ-------------- 106

Query: 147 SSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNG---EIYLETESHYNSLTP-- 201
                       L LS+NH +IP+SL PL NLSKLK+F G   EI  E + H  +LTP  
Sbjct: 107 -----------RLYLSSNHLKIPMSLSPLYNLSKLKSFYGSGNEICAEEDDH--NLTPKF 153

Query: 202 -----------------------KFQLTSISLSGYRDDGTFPKFLYHQH------DLKNA 232
                                  +F L S+ L+ ++  G FP +L   +       L+N 
Sbjct: 154 QLESLSLSNGGQNTRAFPKFLYHQFSLQSLDLTNFQIKGEFPNWLIENNTYLKRLSLENC 213

Query: 233 DLS---------HLNLS----------GEFP--------------------NWLMP--IH 251
            LS         H+NLS          G+ P                    N  +P  + 
Sbjct: 214 SLSGPFLLPKSSHVNLSFLSISMNHFQGQIPSEIRAHLPGLEVLLMSDNGFNGSIPSSLG 273

Query: 252 CLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN--------AFN----------- 292
            +  +  LD+SNN  QG IP  IG  +  L  L+LSRN         FN           
Sbjct: 274 NMSLMYELDLSNNSLQGQIPGWIGN-MSSLEFLDLSRNNLSGPLPPRFNTSSKLRVVYLS 332

Query: 293 ---------------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQL 331
                                DLS+N L G IP WI RL  + +LLL+ N +EGEIP +L
Sbjct: 333 RNKLQGPIAMAFYDSSEIFALDLSHNDLTGRIPEWIGRLSNLRFLLLSYNNLEGEIPIRL 392

Query: 332 CQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMG 391
           C+L ++ +IDLSHN LSG+I   +++T      Y++    +  +S  +  + + N S   
Sbjct: 393 CRLDQLTVIDLSHNYLSGNILSWMISTHPFPFQYNSHDSMF--SSQQSFEFTTKNVSLPY 450

Query: 392 KEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIE 451
           K   +Q L    GID SCN  TG IP +IG L++I+ALNLSHN+LTG IP TF NLK+IE
Sbjct: 451 KGSIIQYLI---GIDFSCNNFTGNIPPEIGNLSKIKALNLSHNSLTGPIPPTFWNLKEIE 507

Query: 452 SLDLSYNLLHGKI-PQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYG 510
           SLDLSYN L G+I P+L  L +L VF VA+NNLSGK P RVAQF+TF+E  Y+ NPFL G
Sbjct: 508 SLDLSYNKLDGEIPPRLTELFSLEVFSVAHNNLSGKTPARVAQFATFDESCYKDNPFLCG 567

Query: 511 QPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDSFLITFTVSYGIAIIGIIGVLYVNPYW 570
           +PL K C    +   +T   T NE+ G  ++M+ F +TF V+Y + ++ I  VLY+NPYW
Sbjct: 568 EPLPKICAA-VMPPSSTPTSTNNEDHGGFMNMEVFYVTFWVAYIMVLLVIGAVLYINPYW 626

Query: 571 RRRWFYLVEVCMTSCYYFVGDNL-ILKRF 598
           RR WF+ +EV + +CYYF+ DNL IL +F
Sbjct: 627 RRAWFHFIEVSINNCYYFLVDNLPILSKF 655

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 255/655 (38%), Positives = 354/655 (54%), Gaps = 81/655 (12%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
           F   KNLE+L +    ++ N   LQ +   M SL+ LSLS  +LN      QG C L HL
Sbjct: 293 FLNLKNLEYLDLSDNTLDNN--ILQTIGT-MTSLKTLSLSSCKLNIQIPTTQGLCDLNHL 349

Query: 61  QELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLTRNFPLGLCELVLLRELYI------- 112
           Q LY+ DNDL   L       TSLQ L+++ N      P+ L  L  L +L         
Sbjct: 350 QVLYMYDNDLSGFLPPCLANLTSLQRLDLSYNHFK--IPMSLRPLYNLSKLKSFDGSSNE 407

Query: 113 -----DNNDLS-----------------GSLPLCLTNLTSLQVLDVSYNQLTESISSSPL 150
                D+++LS                  +LP  L +  +LQ LD++  Q+     +  +
Sbjct: 408 IFAEEDDHNLSPKFQLESLYLSSIGQGARALPKFLYHQFNLQFLDLTNIQIQGEFPNWLI 467

Query: 151 MLLTSIEELILSNNHFQIPISLEPLS--NLS----KLKAFNGEIYLETESHYNSLTPKFQ 204
              T ++EL L N     P  L   S  NLS     +  F G+I  E  +H     P  +
Sbjct: 468 ENNTYLQELHLENCSLSGPFLLPKNSHVNLSILSISMNHFQGQIPSEIGAHL----PGLE 523

Query: 205 LTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNN 264
           +  +S +G+  +G+ P  L +   L+  DLS+  L G+ P W   I  +  L  LD+S N
Sbjct: 524 VLFMSDNGF--NGSIPFSLGNISSLQWLDLSNNILQGQIPGW---IGNMSSLEFLDLSGN 578

Query: 265 FFQGHIPVEIGTYLPGLMHLNLSRNAFN----------------DLSYNRLQGSIPNWID 308
            F G +P   GT    L ++ LSRN                   DLS+N L G IP WID
Sbjct: 579 NFSGRLPPRFGTS-SNLRYVYLSRNKLQGPIAMTFYNSSEIFALDLSHNNLTGRIPKWID 637

Query: 309 RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNT---ALSEGYY 365
           RL  + +LLL+ N +EGEIP QL +L ++ LIDLSHN+LSG+I   +++T    +   Y+
Sbjct: 638 RLSNLRFLLLSYNNLEGEIPIQLSRLDQLILIDLSHNHLSGNILSWMISTHNFPVESTYF 697

Query: 366 DAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTR 425
           D +A      S  +  + + N S   + +   I+    GID SCN  TGEIP +IG L+ 
Sbjct: 698 DFLA-----ISHQSFEFTTKNVSLSYRGD---IIWYFKGIDFSCNNFTGEIPPEIGNLSM 749

Query: 426 IRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI-PQLIVLTTLAVFRVAYNNLS 484
           I+ LNLSHN+LTG IP TFSNLK+IESLDLSYN L G+I P+L  L +L VF VA+NNLS
Sbjct: 750 IKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPRLTELFSLEVFSVAHNNLS 809

Query: 485 GKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDS 544
           G  P RVAQF+TFEE+ Y+ NPFL G+PL K C    ++   T   T N++ G  +D++ 
Sbjct: 810 GNTPVRVAQFATFEENCYKDNPFLCGEPLPKICGA-AMSPSPTPTSTNNKDNGGFMDIEV 868

Query: 545 FLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCYYFVGDNL-ILKRF 598
           F +TF V+Y + ++ I  VLY+NPYWRR WF+ +EV + +CYYF+ DNL IL +F
Sbjct: 869 FYVTFWVAYIMVLLVIGAVLYINPYWRRAWFHFIEVSINNCYYFLVDNLSILSKF 923

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113693|ref|XP_002332513.1| predicted protein [Populus trichocarpa] gi|222832619|gb|EEE71096.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 257/701 (36%), Positives = 346/701 (49%), Gaps = 146/701 (20%)

Query: 30  LMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLL---GAWQTTSLQEL 86
           ++ SL+ LSL  + L+  +I  + F     L+ELY+    L  + L   GA    +L+ L
Sbjct: 242 VLPSLKTLSLKDTNLSWTSISQETFFNSTTLEELYLDRTSLPINFLQNIGA--LPALKVL 299

Query: 87  NVASNKLTRNFPL-GLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESI 145
           +V    L    P  GLCEL  L +L +  N+L GSLP CL NL+SLQ+LDVS NQ T +I
Sbjct: 300 SVGECDLHDTLPAQGLCELKNLEQLDLYGNNLGGSLPDCLGNLSSLQLLDVSINQFTGNI 359

Query: 146 SSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAF--------NGEIY-------- 189
           +SSPL  + S+E   LSNN F+ PI ++P  N S LK F        NG++         
Sbjct: 360 NSSPLTNIISLEFRSLSNNLFEFPILMKPFMNHSSLKFFDNISNNNMNGQVSKNICLIFS 419

Query: 190 -LET----ESHYNSLTPKF--------------------------QLTSISLSGYRDDGT 218
            L+T    ++ +    P                             LT + LS     G 
Sbjct: 420 NLDTLRMAKNGFTGCIPSCLGNISSLEVLDLSNNQLSTVKLEWLTALTFLKLSNNNLGGK 479

Query: 219 FPKFLYHQHDLKNADLSHLNLSGEFPNW--------------------LMPIHCLQK--L 256
            P  +++   L    LS  N  G+ P++                    ++P   +    L
Sbjct: 480 LPDSVFNSSGLYFLYLSGNNFWGQIPDFPPPSWKIWFELDLSNNQFSGMLPRWLVNSTLL 539

Query: 257 ATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN--------AFND-------LSYNRLQG 301
             +D+S N F+G IP +    L  L +L+LS+N         FN        LS NRL G
Sbjct: 540 CAIDLSKNHFKGPIPSDF-CKLEVLEYLDLSKNKLFGSIPSCFNTPQITHVHLSENRLSG 598

Query: 302 ------------------------SIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEV 337
                                   SIPNWI  L  +S LLL  N+  GE P  LC L+++
Sbjct: 599 LLTYGFYNSSSLVTMDLRDNSFTGSIPNWIGNLSSLSVLLLRANHFNGEFPVYLCWLEQL 658

Query: 338 RLIDLSHNNLSGHIPFCLVNTA--------------------LSEGYYDAVAPTWDHASA 377
            ++D+S N LSG +P CL N                      + + YYD + P    +  
Sbjct: 659 SILDVSQNQLSGPLPSCLGNLTFKASSKKALVDLGFVFPSRFIEKAYYDTMGPPLVDSIK 718

Query: 378 PALSYFSPNGSPMGKEETV--------QILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL 429
              S F PN + + +  T         +ILT MSGIDLSCN   G IP ++G L  I AL
Sbjct: 719 NLESIFWPNTTEVIEFTTKNMYYGYKGKILTYMSGIDLSCNNFLGAIPQELGNLCEIHAL 778

Query: 430 NLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIP 488
           NLSHNNL G+IP TF+NLKQIESLDLSYN L+G IP QL  +TTLAVF VA+NNLSGK P
Sbjct: 779 NLSHNNLVGSIPATFANLKQIESLDLSYNNLNGAIPQQLTEITTLAVFSVAHNNLSGKTP 838

Query: 489 DRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDSFLIT 548
           +R  QF TF+E SYEGNPFL G PL  +C++    + +     + +E    IDMD F + 
Sbjct: 839 ERKYQFGTFDESSYEGNPFLCGPPLQNNCNEE--ESPSQPMPNDEQEDDGFIDMDFFYLN 896

Query: 549 FTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCYYFV 589
           F + Y I +  I  VLY+NPYWRRRWFY +E C+ +C YF+
Sbjct: 897 FGICYTIVVTTIAAVLYINPYWRRRWFYFIEDCIDTCNYFM 937

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	603
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.844	0.521	0.342	5e-50
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.812	0.507	0.325	1.5e-47
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.792	0.536	0.344	1.8e-47
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.797	0.514	0.335	2.2e-47
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.844	0.469	0.311	1.3e-46
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.781	0.518	0.332	6.4e-46
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.601	0.363	0.382	1.1e-44
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.824	0.487	0.302	1.1e-41
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.797	0.567	0.276	9.6e-40
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.674	0.356	0.311	2.6e-39

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 5.0e-50, P = 5.0e-50
 Identities = 193/563 (34%), Positives = 266/563 (47%)

Query:    57 LVH-LQELYIRDNDLRDSL---LGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXXXXYI 112
             +VH LQ L    ND+   L   +G      L  +N + N    N P             +
Sbjct:   427 IVHKLQVLDFSANDITGVLPDNIGH-VLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDL 485

Query:   113 DNNDLSGSLPLCL-TNLTSLQVLDVSYNQLTESISSSPLML-LTSIEELILSNNHF--QI 168
               N+ SG LP  L T   SL  L +S+N  +  I   P+   LTS+  L + NN F  +I
Sbjct:   486 SYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPIL--PIQTRLTSLIVLRMHNNLFTGEI 543

Query:   169 PISLEPLSNLSKLKAFNGEIYLETESHYNSLTP-KFQLTSISLSGYRDDGTFPKFLYHQH 227
              + L  L NLS   A N  +   T    +S+ P    L  + LS    +GT P  L   H
Sbjct:   544 GVGLRTLVNLSIFDASNNRL---TGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIH 600

Query:   228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEI--GTYLPGLMHLN 285
              L   DLS   LSG+ P+ +  ++ +  +    + NN F G +PV +    Y+  L +  
Sbjct:   601 HLNFLDLSGNLLSGDLPSSV--VNSMYGIKIF-LHNNSFTGPLPVTLLENAYILDLRNNK 657

Query:   286 LSRNA---FND-------LSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLK 335
             LS +     N        L  N L GSIP  +  L  I  L L++N + G IP  L  L 
Sbjct:   658 LSGSIPQFVNTGKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLS 717

Query:   336 EVRLIDLSHNNLSGHIPF--CLV-----NTALSEG---YYDAVAPTWDHASAPALSYFSP 385
                   +  +  S  I F   L      +T L +    YYD+     +   A    Y S 
Sbjct:   718 TELGEGIGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMIVEIEFAAKQRYDSF 777

Query:   386 NGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFS 445
             +G           L  M G+DLS N+L+G IP ++G L+++RALNLS N L+ +IP  FS
Sbjct:   778 SGGT---------LDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFS 828

Query:   446 NLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEG 504
              LK IESLDLSYN+L G IP QL  LT+LAVF V++NNLSG IP    QF+TF ++SY G
Sbjct:   829 KLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQG-GQFNTFNDNSYLG 887

Query:   505 NPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGG---SLIDMDSFLITFTVSYGIAIIGII 561
             NP L G P  +SC+    T        E EE     + IDM     T   +Y IA+IGI+
Sbjct:   888 NPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGIL 947

Query:   562 GVLYVNPYWRRRWFYLVEVCMTS 584
              ++  +  WRR W  +V+  + S
Sbjct:   948 VLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.5e-47, P = 1.5e-47
 Identities = 178/547 (32%), Positives = 262/547 (47%)

Query:    59 HLQELYIRDNDLRDSLLGAW-QTTSLQELNVASNKLTRNFPXXXXXXXXXXXXY-IDNND 116
             HL+ L    N+ +++L  +      +Q ++++ N    N P              + +N 
Sbjct:   439 HLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNK 498

Query:   117 LSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ--IPISLEP 174
             LSG +    TN T++  L +  N  T  I    L  L ++E L +SNN+    IP  +  
Sbjct:   499 LSGEIFPESTNFTNILGLFMDNNLFTGKIGQG-LRSLINLELLDMSNNNLTGVIPSWIGE 557

Query:   175 LSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADL 234
             L +L+ L   +   +L+ +    SL  K  L  + LS     G  P     QHD +N  +
Sbjct:   558 LPSLTALLISDN--FLKGDIPM-SLFNKSSLQLLDLSANSLSGVIPP----QHDSRNGVV 610

Query:   235 SHLN---LSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF 291
               L    LSG  P+ L     L  +  LD+ NN F G IP E          +N+   + 
Sbjct:   611 LLLQDNKLSGTIPDTL-----LANVEILDLRNNRFSGKIP-EF---------INIQNISI 655

Query:   292 NDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQL-----KEVRLIDLSH-- 344
               L  N   G IP+ +  L  I  L L+NN + G IP+ L        KE    D     
Sbjct:   656 LLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGI 715

Query:   345 -------NNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAP--ALSYFSPNGSPMGKEET 395
                    N  S H  F   ++  + G Y     T D  S    A +      +   + + 
Sbjct:   716 SFPSDVFNGFSLHQDF---SSNKNGGIYFKSLLTLDPLSMDYKAATQTKIEFATKHRYDA 772

Query:   396 VQ--ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESL 453
                  L  + G+DLS N+L+GEIP + G L  +RALNLSHNNL+G IP + S+++++ES 
Sbjct:   773 YMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESF 832

Query:   454 DLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512
             DLS+N L G+IP QL  LT+L+VF+V++NNLSG IP    QF+TF+ +SY GN  L GQP
Sbjct:   833 DLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQG-RQFNTFDAESYFGNRLLCGQP 891

Query:   513 LSKSCDDNGLTTVTTEAYTENEEGGSLIDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRR 572
              ++SC++N       EA    E   S+IDM SF ++F  +Y   +IGI+  L  +  W R
Sbjct:   892 TNRSCNNNSYE----EADNGVEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSR 947

Query:   573 RWFYLVE 579
              WFY V+
Sbjct:   948 FWFYKVD 954

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 1.8e-47, P = 1.8e-47
 Identities = 181/525 (34%), Positives = 258/525 (49%)

Query:    82 SLQELNVASNKLTRNFPXXXXXXXXXXXXYIDNNDLSGSLPLCL-TNLTSLQVLDVSYNQ 140
             SL+ LN+++N+   N P             +  N+ SG LP  L T   SL  L +S+N+
Sbjct:   374 SLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNR 433

Query:   141 LTESI---SSSPLMLLTSIEELILSNNHF--QIPISLEPLSNLSKLKAFNGEIYLETESH 195
              +  I   SS    L+T    LI+ NN F  +IP +L  L  LS +   N    L T + 
Sbjct:   434 FSGPIIRKSSDETSLIT----LIMDNNMFTGKIPRTLLNLRMLSVIDLSNN---LLTGTI 486

Query:   196 YNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQK 255
                L   F L  + +S  R  G  P  L++   L   DLS   LSG  P  L        
Sbjct:   487 PRWLG-NFFLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLP--LRSSSDYGY 543

Query:   256 LATLDVSNNFFQGHIPVEI--GTYLPGLMHLNLSRNA--FND--------LSYNRLQGSI 303
             +  LD+ NN   G IP  +  G  L  L +  LS N   F          L  N L G I
Sbjct:   544 I--LDLHNNNLTGSIPDTLWYGLRLLDLRNNKLSGNIPLFRSTPSISVVLLRENNLTGKI 601

Query:   304 PNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNL-SGHIPFCLVNTAL-- 360
             P  +  L  +  L  A+N +   IP+  C +  +      H+N  S   P  L++  +  
Sbjct:   602 PVELCGLSNVRMLDFAHNRLNESIPS--C-VTNLSFGSGGHSNADSDWYPASLLSNFMEI 658

Query:   361 -SEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEE-TVQI---LTSMSGIDLSCNKLTGE 415
              +E YY+++  + D  S      F+       K+   + +   L  M G+DLS N+L+G 
Sbjct:   659 YTEVYYESLIVS-DRFSLDYSVDFNVQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGN 717

Query:   416 IPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLA 474
             IP ++G L R+R+LNLS N+L+G+IP +FSNL+ IESLDLS+N LHG IP QL +L +L 
Sbjct:   718 IPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLV 777

Query:   475 VFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENE 534
             VF V+YNNLSG IP    QF+TF E SY GN  L G P  +SC   G T  + + Y +++
Sbjct:   778 VFNVSYNNLSGVIPQG-KQFNTFGEKSYLGNFLLCGSPTKRSC--GGTTISSGKEYEDDD 834

Query:   535 EGGSLIDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVE 579
             E G L+D+     +   +Y   ++G +  L  +  WRR WF LV+
Sbjct:   835 ESG-LLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWFCLVD 878

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.2e-47, P = 2.2e-47
 Identities = 176/525 (33%), Positives = 254/525 (48%)

Query:    75 LGAWQTTSLQEL--NVASNKLTRNFPXXXXXXXXXXXXYIDNNDLSGSLPLCLTNLTSLQ 132
             +G  +  S  +L  N  S KL R+F              + +N  SG      TN  SL 
Sbjct:   434 IGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLK---LSHNKFSGRFLPRETNFPSLD 490

Query:   133 VLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ--IPISLEPLSNLSKLKAFNGEIYL 190
             VL +  N  T +I    L   T +  L +SNN     IP  L     L  +   N   +L
Sbjct:   491 VLRMDNNLFTGNIGGG-LSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNN--FL 547

Query:   191 ETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPI 250
             E     + L   F L+ + LSG +  G  P  +  +  +    L + N +G  P+ L   
Sbjct:   548 EGTIPPSLLGMPF-LSFLDLSGNQFSGALPSHVDSELGIYMF-LHNNNFTGPIPDTL--- 602

Query:   251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL 310
               L+ +  LD+ NN   G IP    T       +N+       L  N L GSIP  +  L
Sbjct:   603 --LKSVQILDLRNNKLSGSIPQFDDT-----QSINILL-----LKGNNLTGSIPRELCDL 650

Query:   311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAP 370
               +  L L++N + G IP+ L  L   RL     + ++ +IP   + T+L    Y +   
Sbjct:   651 SNVRLLDLSDNKLNGVIPSCLSNLSFGRL---QEDAMALNIPPSFLQTSLEMELYKSTFL 707

Query:   371 TWDHASAPALSY------FSPN---GSPMGKEETVQ-ILTSMSGIDLSCNKLTGEIPTQI 420
               D       +Y      F+      S  G+ E  + IL  M G+DLS N+L+G IPT++
Sbjct:   708 V-DKIEVDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTEL 766

Query:   421 GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIV-LTTLAVFRVA 479
             G L ++R LNLSHN+L G+IP +FS L  +ESLDLS+N+L G IPQL+  LT+LAVF V+
Sbjct:   767 GDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVS 826

Query:   480 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSL 539
              NNLSG IP    QF+TFEE+SY GNP L G P S+SC+ N  +    +   E E+  + 
Sbjct:   827 SNNLSGIIPQG-RQFNTFEEESYLGNPLLCGPPTSRSCETNK-SPEEADNGQEEEDDKAA 884

Query:   540 IDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTS 584
             IDM  F  +    Y  A+IG++ ++  +  WRR W  +V+  + S
Sbjct:   885 IDMMVFYFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
 Identities = 175/562 (31%), Positives = 264/562 (46%)

Query:    57 LVH-LQELYIRDNDLRDSL---LGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXXXXYI 112
             LVH LQ L I  N + DS+   +G     +L+ +N +SN      P             +
Sbjct:   526 LVHGLQVLDISSNMIYDSIQEDIGM-VFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDM 584

Query:   113 DNNDLSGSLPLC-LTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF--QIP 169
              +N L G LP+  L+   SL+VL +S NQL   I S    L T +  L L  N+F   + 
Sbjct:   585 SSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANL-TGLVGLFLDGNNFTGSLE 643

Query:   170 ISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDL 229
               L    NL+ L   +             ++   +L+ + +SG +  G FP FL     +
Sbjct:   644 EGLLKSKNLTLLDISDNRFSGMLPLWIGRIS---RLSYLYMSGNQLKGPFP-FLRQSPWV 699

Query:   230 KNADLSHLNLSGEFP-NWLMPIHCLQKLATLDVS-NNFFQGHIPVEIGTYLPGLMHLNLS 287
             +  D+SH + SG  P N   P   L++L   +        G++    G  +  L + N S
Sbjct:   700 EVMDISHNSFSGSIPRNVNFP--SLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFS 757

Query:   288 RNAFNDLSY-----------NRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQL-- 334
                 N +             N  Q  IP  I +L ++  L L++N   G IP+   ++  
Sbjct:   758 GKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSF 817

Query:   335 ------KEVRLI-DLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG 387
                   + + L+ D   + ++  +P C   + L+    D V   +    A  + + + + 
Sbjct:   818 GAEQNDRTMSLVADFDFSYIT-FLPHCQYGSHLNLD--DGVRNGYQPKPATVVDFLTKS- 873

Query:   388 SPMGKEETVQ--ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFS 445
                 + E  Q  IL  M G+DLS N+L+GEIP +IG L  IR+LNLS N LTG+IP + S
Sbjct:   874 ----RYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSIS 929

Query:   446 NLKQIESLDLSYNLLHGKIPQLIV-LTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEG 504
              LK +ESLDLS N L G IP  +  L +L    ++YNNLSG+IP +     TF+E SY G
Sbjct:   930 KLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFK-GHLVTFDERSYIG 988

Query:   505 NPFLYGQPLSKSCDDNGLT---TVTTEAYTE-NEEGGSLIDMDSFLITFTVSYGIAIIGI 560
             N  L G P +K+C    +    +V+T A  E NEE G++IDM  F  T    Y    + +
Sbjct:   989 NAHLCGLPTNKNCISQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLAL 1048

Query:   561 IGVLYVNPYWRRRWFYLVEVCM 582
                LY++  W R WFY V++C+
Sbjct:  1049 FAFLYIDSRWSREWFYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 6.4e-46, P = 6.4e-46
 Identities = 173/520 (33%), Positives = 254/520 (48%)

Query:    82 SLQELNVASNKLTRNFPXXXXXXXXXXXXYIDNNDLSGSLPLC-LTNLTSLQVLDVSYNQ 140
             +L  +N ++N    NFP             +  N+LSG LP   +++  SL +L +S+N+
Sbjct:   415 NLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNK 474

Query:   141 LTESISSSPLMLLTSIEELILSNNHF--QIPISLEPLSNLSKLKAFNGEIYLETESHYNS 198
              +           TS+  L ++NN F  +I + L  L +L  L   N   +LE E     
Sbjct:   475 FSGHFLPRQTNF-TSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNN--FLEGELPPLL 531

Query:   199 LTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLN-LSGEFPNWLMPIHCLQKLA 257
             L  ++ L  + LSG    G  P  +     L N    H N  +G  P+       L  + 
Sbjct:   532 LVFEY-LNFLDLSGNLLSGALPSHV----SLDNVLFLHNNNFTGPIPDTF-----LGSIQ 581

Query:   258 TLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLL 317
              LD+ NN   G+IP  + T        ++S   F  L  N L G IP+ +    ++  L 
Sbjct:   582 ILDLRNNKLSGNIPQFVDTQ-------DIS---FLLLRGNSLTGYIPSTLCEFSKMRLLD 631

Query:   318 LANNYIEGEIPA-------QLCQLKEVR----LIDLSHNNLSGH-IPFCLVNTALSEGYY 365
             L++N + G IP+        L + +E+      + L    L  +   F + N  L    Y
Sbjct:   632 LSDNKLNGFIPSCFNNLSFGLARKEEITNYYVAVALESFYLGFYKSTFVVENFRLDYSNY 691

Query:   366 DAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTR 425
               +    D   A    Y S  G+    E T   L SM G+DLS N+L+G IP ++G L +
Sbjct:   692 FEI----DVKFATKQRYDSYIGAFQFSEGT---LNSMYGLDLSSNELSGVIPAELGDLFK 744

Query:   426 IRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLS 484
             +RALNLSHN L+  IP +FS L+ IESLDLSYN+L G IP QL  LT+LA+F V+YNNLS
Sbjct:   745 LRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLS 804

Query:   485 GKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEGGSLIDMDS 544
             G IP    QF+TF+E+SY GNP L G P   SC+    +        E+++  + IDM  
Sbjct:   805 GIIPQG-KQFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDKEVA-IDMLV 862

Query:   545 FLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTS 584
             F  +   +Y  A+IGI+ ++ V+  WRR W  LV+  + S
Sbjct:   863 FYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.1e-44, P = 1.1e-44
 Identities = 149/390 (38%), Positives = 203/390 (52%)

Query:   112 IDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPIS 171
             + NN L+G  PLCLT+LT L+VLD+S NQLT ++ S+ L  L S+E L L  N+F+   S
Sbjct:   265 LSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA-LANLESLEYLSLFGNNFEGFFS 323

Query:   172 LEPLSNLSKLKAFNGEIY---LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHD 228
             L  L+NLSKLK    +     LE E    S  PKFQL  I+L     +   P FL HQ D
Sbjct:   324 LGLLANLSKLKVLRLDSQSNSLEVEFE-TSWKPKFQLVVIALRSCNLEKV-PHFLLHQKD 381

Query:   229 LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSR 288
             L + DLS   + G FP+WL+  +   KL  L + NN F      ++      L+ LN+S 
Sbjct:   382 LHHVDLSDNQIHGNFPSWLLENNT--KLEVLLLQNNSFTSF---QLPKSAHNLLFLNVSV 436

Query:   289 NAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS 348
             N FN L    LQ     WI  LP +  + LA N  +G +P+ L  +K +  +DLSHN   
Sbjct:   437 NKFNHLF---LQNF--GWI--LPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFH 489

Query:   349 GHIP--F---CLVNTALSEGYYDAVAPTW-DHASAPALSYFS-PNGSPMGK-EETVQILT 400
             G +P  F   C   T L   +       + + A+   L   S  N    G   +  + L 
Sbjct:   490 GKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLP 549

Query:   401 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL 460
             S++ +D+S NKLTG IP+ IG    + AL LS+N L G IP +  N+  ++ LDLS N L
Sbjct:   550 SLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRL 609

Query:   461 HGKIPQLIV-LTTLAVFRVAYNNLSGKIPD 489
              G IP  +  +   AV  +  NNLSG IPD
Sbjct:   610 SGDIPPHVSSIYHGAVLLLQNNNLSGVIPD 639

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 163/539 (30%), Positives = 260/539 (48%)

Query:    54 FCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXXXXYID 113
             F  L  L  LYI    +  + + +   ++L+ L++ S  +T +FP             + 
Sbjct:   491 FSSLKQLGTLYISRIPISTTNITSDFPSNLEYLSLRSCNIT-DFPEFIRKGRNLQILDLS 549

Query:   114 NNDLSGSLPLCLTNLTSLQVLDVSYNQLTE---SISSSPLMLLTSIEELILSNNHFQIPI 170
             NN + G +P  L  + +L  +D+S N L+    S+ +SP   LTS++   LS+N FQ P+
Sbjct:   550 NNKIKGQVPDWLWRMPTLNSVDLSNNSLSGFHVSVKASPESQLTSVD---LSSNAFQGPL 606

Query:   171 SLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYH-QHDL 229
              L   S    L+ F+G     T     S+     L  + LS    +G+ P  L      L
Sbjct:   607 FLPSKS----LRYFSGSNNNFTGKIPRSICGLSSLEILDLSNNNLNGSLPWCLETLMSSL 662

Query:   230 KNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN 289
              + DL + +LSG  P   M      KL +LDVS+N  +G +P  + T    L  LN+  N
Sbjct:   663 SDLDLRNNSLSGSLPEIFMNA---TKLRSLDVSHNRMEGKLPGSL-TGCSSLEVLNVGSN 718

Query:   290 AFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEG---EIPAQLCQLKEVRLIDLSHNN 346
               ND+         P  ++ L ++  L+L +N   G    +        ++++ID+SHN+
Sbjct:   719 RINDM--------FPFELNSLQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQIIDVSHND 770

Query:   347 LSGHIPF-CLVN-TALSEGYYDAVAPTW-DHASA--PALSYFSPNGSPMGKE---ETVQI 398
               G +P    +N TA+S    + + P +  + S    +L Y++ +   M K    E  ++
Sbjct:   771 FFGILPSDYFMNWTAMSSKKDNNIEPEYIQNPSVYGSSLGYYT-SLVLMSKGVSMEMERV 829

Query:   399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
             LT  + IDLS N+L G+IP  IG L  +R LN+S N  TG IP + +NLK +ESLD+S N
Sbjct:   830 LTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQN 889

Query:   459 LLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSC 517
              + G+IP +L  L++LA   V++N L G IP    QF   +  SYEGNP L G  L   C
Sbjct:   890 NISGEIPPELGTLSSLAWINVSHNQLVGSIPQGT-QFQRQKCSSYEGNPGLNGPSLENVC 948

Query:   518 DDNGLTTVTTEAYTENEEGGSLIDMDSFL-ITFTVSYGIAIIGIIGVLYVNPYWRRRWF 575
                G    +T   TE  E     + +SF  I   + +   ++  + + Y+   ++ +WF
Sbjct:   949 ---GHIKESTPTQTEPLETKEEEEEESFSWIAAGLGFAPGVVFGLAMGYIVVSYKHQWF 1004

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 9.6e-40, P = 9.6e-40
 Identities = 148/536 (27%), Positives = 247/536 (46%)

Query:    60 LQELYIRDNDLRDSL--LGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXXXXYIDNNDL 117
             L+ +Y+++N     +       +T LQ+L +  N+L    P             I +N+ 
Sbjct:   328 LESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNF 387

Query:   118 SGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSN 177
             +G++P  ++ L +L  LD+S N L   + +     L  +  ++LS+N F    S E   N
Sbjct:   388 TGAIPPTISKLVNLLHLDLSKNNLEGEVPAC----LWRLNTMVLSHNSFS---SFE---N 437

Query:   178 LSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRD------DGTFPKFLYH-QHDLK 230
              S+ +A   E+ L + S    + P + +  +S  G+ D       G+ P  + +    +K
Sbjct:   438 TSQEEALIEELDLNSNSFQGPI-P-YMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIK 495

Query:   231 NADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290
               +L   N SG  P+         +L +LDVS+N  +G  P  +         +N     
Sbjct:   496 ELNLGDNNFSGTLPDIFSKA---TELVSLDVSHNQLEGKFPKSL---------INCKALE 543

Query:   291 FNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQL--KEVRLIDLSHNNLS 348
               ++  N+++   P+W++ LP +  L L +N   G +  +   +  + +R+ID+SHNN S
Sbjct:   544 LVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFS 603

Query:   349 GHIP-FCLVN----TALSEGYYDAVAPTWDHASAPALSYFSPN-GSPMGKEETVQILTSM 402
             G +P +   N    T L+E     +   W +A +        N G  M  E   +I    
Sbjct:   604 GTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHEMEMVNKGVDMSFE---RIRRDF 660

Query:   403 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG 462
               ID S NK+ G IP  +GYL  +R LNLS N  T  IP   +NL ++E+LD+S N L G
Sbjct:   661 RAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSG 720

Query:   463 KIPQ-LIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNG 521
             +IPQ L  L+ L+    ++N L G +P R  QF   +  S+  NP LYG  L   C D G
Sbjct:   721 QIPQDLAALSFLSYMNFSHNLLQGPVP-RGTQFQRQKCSSFLDNPGLYG--LEDICRDTG 777

Query:   522 LTTVTTEAYTENEEGGSLIDMDSFLITFTVSYGIAII-G-IIGVLYVNPYWRRRWF 575
                 T++   +  E     +M ++ +   ++YG  ++ G +IG  Y +      WF
Sbjct:   778 ALNPTSQLPEDLSEAEE--NMFNW-VAAAIAYGPGVLCGLVIGHFYTSH--NHEWF 828

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 2.6e-39, P = 2.6e-39
 Identities = 136/436 (31%), Positives = 223/436 (51%)

Query:    81 TSLQELNVASNKLTRNFPXXXXXXXXXXXXYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
             + L +L +  N L+ + P            ++  N L G +P  + N ++L+++D+S N 
Sbjct:   274 SELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNL 333

Query:   141 LTESISSSPLMLLTSIEELILSNNHFQ--IPISLEPLSNLSKLKAFNGEIYLETESHYNS 198
             L+ SI SS +  L+ +EE ++S+N F   IP ++   S+L +L+    +I     S   +
Sbjct:   334 LSGSIPSS-IGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGT 392

Query:   199 LTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLAT 258
             LT   +LT       + +G+ P  L    DL+  DLS  +L+G  P+ L  +  L KL  
Sbjct:   393 LT---KLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKL-- 447

Query:   259 LDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLL 318
             L +SN+   G IP EIG     L+ L L         +NR+ G IP+ I  L +I++L  
Sbjct:   448 LLISNSL-SGFIPQEIGN-CSSLVRLRLG--------FNRITGEIPSGIGSLKKINFLDF 497

Query:   319 ANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAP 378
             ++N + G++P ++    E+++IDLS+N+L G +P   V++       D  A  +      
Sbjct:   498 SSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNP-VSSLSGLQVLDVSANQFSGKIPA 556

Query:   379 ALSYF-SPNGSPMGKEE-TVQILTSM---SGI---DLSCNKLTGEIPTQIGYLTRIR-AL 429
             +L    S N   + K   +  I TS+   SG+   DL  N+L+GEIP+++G +  +  AL
Sbjct:   557 SLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIAL 616

Query:   430 NLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPD 489
             NLS N LTG IP   ++L ++  LDLS+N+L G +  L  +  L    ++YN+ SG +PD
Sbjct:   617 NLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDLAPLANIENLVSLNISYNSFSGYLPD 676

Query:   490 RVAQFSTFEEDSYEGN 505
                 F        EGN
Sbjct:   677 NKL-FRQLSPQDLEGN 691

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	603
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-37
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  148 bits (374), Expect = 3e-37
 Identities = 137/459 (29%), Positives = 213/459 (46%), Gaps = 66/459 (14%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
           TSL+ L +ASN+L    P  L ++  L+ +Y+  N+LSG +P  +  LTSL  LD+ YN 
Sbjct: 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247

Query: 141 LTESISSSPLMLLTSIEELILSNNHF--QIPISLEPLSNLSKL----KAFNGEI------ 188
           LT  I SS L  L +++ L L  N     IP S+  L  L  L     + +GEI      
Sbjct: 248 LTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 189 --YLETESHY-NSLTPKF--------QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHL 237
              LE    + N+ T K         +L  + L   +  G  PK L   ++L   DLS  
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366

Query: 238 NLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYN 297
           NL+GE P  L     L KL      +N  +G IP  +G     L  + L  N+F+     
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILF---SNSLEGEIPKSLGA-CRSLRRVRLQDNSFS----- 417

Query: 298 RLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFC--- 354
              G +P+   +LP + +L ++NN ++G I ++   +  ++++ L+ N   G +P     
Sbjct: 418 ---GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474

Query: 355 --LVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL 412
             L N  LS   +    P                         +  L+ +  + LS NKL
Sbjct: 475 KRLENLDLSRNQFSGAVP-----------------------RKLGSLSELMQLKLSENKL 511

Query: 413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ-LIVLT 471
           +GEIP ++    ++ +L+LSHN L+G IP +FS +  +  LDLS N L G+IP+ L  + 
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571

Query: 472 TLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYG 510
           +L    +++N+L G +P   A F      +  GN  L G
Sbjct: 572 SLVQVNISHNHLHGSLPSTGA-FLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  138 bits (348), Expect = 5e-34
 Identities = 94/289 (32%), Positives = 139/289 (48%), Gaps = 60/289 (20%)

Query: 205 LTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNN 264
           L++  LSG   D  F         L+  +LS+ N +G  P   +P      L TLD+SNN
Sbjct: 100 LSNNQLSGPIPDDIF----TTSSSLRYLNLSNNNFTGSIPRGSIPN-----LETLDLSNN 150

Query: 265 FFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIE 324
              G IP +IG++         S     DL  N L G IPN +  L  + +L LA+N + 
Sbjct: 151 MLSGEIPNDIGSF---------SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201

Query: 325 GEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFS 384
           G+IP +L Q+K ++ I L +NNLSG IP+                               
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPY------------------------------- 230

Query: 385 PNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITF 444
                      +  LTS++ +DL  N LTG IP+ +G L  ++ L L  N L+G IP + 
Sbjct: 231 ----------EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

Query: 445 SNLKQIESLDLSYNLLHGKIPQLIV-LTTLAVFRVAYNNLSGKIPDRVA 492
            +L+++ SLDLS N L G+IP+L++ L  L +  +  NN +GKIP  + 
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  130 bits (328), Expect = 2e-31
 Identities = 121/420 (28%), Positives = 192/420 (45%), Gaps = 51/420 (12%)

Query: 83  LQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLT 142
           L+ L++++N L+   P  +     L+ L +  N L G +P  LTNLTSL+ L ++ NQL 
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201

Query: 143 ESISSSPLMLLTSIEELILSNNHF--QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
             I    L  + S++ + L  N+   +IP  +  L++L+ L              YN+LT
Sbjct: 202 GQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV-----------YNNLT 249

Query: 201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLD 260
                           G  P  L +  +L+   L    LSG  P     I  LQKL +LD
Sbjct: 250 ----------------GPIPSSLGNLKNLQYLFLYQNKLSGPIPP---SIFSLQKLISLD 290

Query: 261 VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLAN 320
           +S+N   G IP E+   L  L  L+L  N F         G IP  +  LP++  L L +
Sbjct: 291 LSDNSLSGEIP-ELVIQLQNLEILHLFSNNFT--------GKIPVALTSLPRLQVLQLWS 341

Query: 321 NYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTA-------LSEGYYDAVAPTWD 373
           N   GEIP  L +   + ++DLS NNL+G IP  L ++         S      +  +  
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 374 HASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 433
              +        N            L  +  +D+S N L G I ++   +  ++ L+L+ 
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461

Query: 434 NNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ-LIVLTTLAVFRVAYNNLSGKIPDRVA 492
           N   G +P +F + K++E+LDLS N   G +P+ L  L+ L   +++ N LSG+IPD ++
Sbjct: 462 NKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  122 bits (307), Expect = 6e-29
 Identities = 104/375 (27%), Positives = 156/375 (41%), Gaps = 81/375 (21%)

Query: 116 DLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPL 175
           ++SG +   +  L  +Q +++S NQL+  I        +S+  L LSNN+F   I    +
Sbjct: 80  NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI 139

Query: 176 SNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLS 235
            NL  L                                                   DLS
Sbjct: 140 PNLETL---------------------------------------------------DLS 148

Query: 236 HLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS 295
           +  LSGE PN    I     L  LD+  N   G IP  +          NL+   F  L+
Sbjct: 149 NNMLSGEIPN---DIGSFSSLKVLDLGGNVLVGKIPNSLT---------NLTSLEFLTLA 196

Query: 296 YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCL 355
            N+L G IP  + ++  + ++ L  N + GEIP ++  L  +  +DL +NNL+G IP  L
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Query: 356 VNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE 415
            N  L    Y  +         P  S FS              L  +  +DLS N L+GE
Sbjct: 257 GN--LKNLQYLFLYQNKLSGPIPP-SIFS--------------LQKLISLDLSDNSLSGE 299

Query: 416 IPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ-LIVLTTLA 474
           IP  +  L  +  L+L  NN TG IP+  ++L +++ L L  N   G+IP+ L     L 
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359

Query: 475 VFRVAYNNLSGKIPD 489
           V  ++ NNL+G+IP+
Sbjct: 360 VLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.6 bits (230), Expect = 2e-19
 Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 19/186 (10%)

Query: 312 QISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPT 371
           ++  + L+   I G+I + + +L  ++ I+LS+N LSG IP  +  T+ S  Y +     
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL---- 125

Query: 372 WDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL 431
               S    +   P GS          + ++  +DLS N L+GEIP  IG  + ++ L+L
Sbjct: 126 ----SNNNFTGSIPRGS----------IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171

Query: 432 SHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDR 490
             N L G IP + +NL  +E L L+ N L G+IP +L  + +L    + YNNLSG+IP  
Sbjct: 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231

Query: 491 VAQFST 496
           +   ++
Sbjct: 232 IGGLTS 237

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 1e-13
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 402 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461
           + G+ L    L G IP  I  L  ++++NLS N++ G IP +  ++  +E LDLSYN  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 462 GKIPQ-LIVLTTLAVFRVAYNNLSGKIP 488
           G IP+ L  LT+L +  +  N+LSG++P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.2 bits (177), Expect = 4e-13
 Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 4/110 (3%)

Query: 405 IDLSCNKLTGEIPTQIGYLT-RIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGK 463
           I+LS N+L+G IP  I   +  +R LNLS+NN TG+IP     +  +E+LDLS N+L G+
Sbjct: 98  INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGE 155

Query: 464 IPQLI-VLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512
           IP  I   ++L V  +  N L GKIP+ +   ++ E  +   N  +   P
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP 205

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 12/99 (12%)

Query: 233 DLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN 292
            L +  L G  PN    I  L+ L ++++S N  +G+IP  +G+ +  L  L        
Sbjct: 424 GLDNQGLRGFIPN---DISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVL-------- 471

Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQL 331
           DLSYN   GSIP  + +L  +  L L  N + G +PA L
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 426 IRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLI-VLTTLAVFRVAYNNLS 484
           I  L L +  L G IP   S L+ ++S++LS N + G IP  +  +T+L V  ++YN+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 485 GKIPDRVAQFSTFEEDSYEGNPFLYGQ 511
           G IP+ + Q ++    +  GN  L G+
Sbjct: 480 GSIPESLGQLTSLRILNLNGN-SLSGR 505

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 5e-08
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query: 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
           L  +  I+LS N + G IP  +G +T +  L+LS+N+  G+IP +   L  +  L+L+ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 459 LLHGKIP 465
            L G++P
Sbjct: 501 SLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 23/202 (11%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
               +NL +L+    L          +SEL+    L SL     N   I         +L
Sbjct: 83  LDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNL 142

Query: 61  QELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGS 120
           +EL + DN +           +L+ L+++ N L+    L L  L  L  L +  N +S  
Sbjct: 143 KELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKIS-D 200

Query: 121 LPLCLTNLTSLQVLDVSYNQLTESISS---------------------SPLMLLTSIEEL 159
           LP  +  L++L+ LD+S N + E +SS                       +  L+++E L
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETL 260

Query: 160 ILSNNHFQIPISLEPLSNLSKL 181
            LSNN      SL  L+NL +L
Sbjct: 261 DLSNNQISSISSLGSLTNLREL 282

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 41/129 (31%)

Query: 313 ISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTW 372
           I  L L N  + G IP  + +L+ ++ I+LS N++ G+IP  L +               
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--------------- 464

Query: 373 DHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLS 432
                                     +TS+  +DLS N   G IP  +G LT +R LNL+
Sbjct: 465 --------------------------ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 433 HNNLTGTIP 441
            N+L+G +P
Sbjct: 499 GNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 42/137 (30%)

Query: 299 LQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNT 358
           L+G IPN I +L  +  + L+ N I G IP  L  +  + ++DLS+N+ +G IP      
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP------ 483

Query: 359 ALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPT 418
                                              E++  LTS+  ++L+ N L+G +P 
Sbjct: 484 -----------------------------------ESLGQLTSLRILNLNGNSLSGRVPA 508

Query: 419 QIGYLTRIRA-LNLSHN 434
            +G     RA  N + N
Sbjct: 509 ALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 72  DSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSL 131
           DS  G W    +  L + +  L    P  + +L  L+ + +  N + G++P  L ++TSL
Sbjct: 412 DSTKGKW---FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468

Query: 132 QVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF--QIPISL 172
           +VLD+SYN    SI  S L  LTS+  L L+ N    ++P +L
Sbjct: 469 EVLDLSYNSFNGSIPES-LGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 259 LDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLL 318
           L + N   +G IP +I      L HL     + N LS N ++G+IP  +  +  +  L L
Sbjct: 423 LGLDNQGLRGFIPNDI----SKLRHLQ----SIN-LSGNSIRGNIPPSLGSITSLEVLDL 473

Query: 319 ANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIP 352
           + N   G IP  L QL  +R+++L+ N+LSG +P
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 25/56 (44%), Positives = 31/56 (55%)

Query: 405 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL 460
           +DLS N+LT         L  ++ L+LS NNLT   P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166
           L+ L + NN L+         L +L+VLD+S N LT SIS      L S+  L LS N+ 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 9e-05
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 14  QMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDS 73
           QML      F   + +   S RL +L  SR   +  + +    L  L +L + +N L   
Sbjct: 455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514

Query: 74  LLGAWQT-TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQ 132
           +     +   L  L+++ N+L+   P    E+ +L +L +  N LSG +P  L N+ SL 
Sbjct: 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574

Query: 133 VLDVSYNQLTESISSS 148
            +++S+N L  S+ S+
Sbjct: 575 QVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 424 TRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLT--TLAVFRVAYN 481
           +R+ +++LS  N++G I      L  I++++LS N L G IP  I  T  +L    ++ N
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 482 NLSGKIP 488
           N +G IP
Sbjct: 129 NFTGSIP 135

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 255 KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQIS 314
            L +LD+SNN     IP      LP L  L+LS N    +S        P     LP + 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSIS--------PEAFSGLPSLR 51

Query: 315 YLLLANNYI 323
            L L+ N +
Sbjct: 52  SLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	603
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
PLN03150	623	hypothetical protein; Provisional	99.56
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.25
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.11
PLN03150	623	hypothetical protein; Provisional	99.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.0
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.74
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.2
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.06
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.0
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.97
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.95
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.84
KOG4341	483	consensus F-box protein containing LRR [General fu	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.71
KOG4341	483	consensus F-box protein containing LRR [General fu	97.66
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.51
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.04
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.99
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.81
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.8
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.0
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.53
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.21
KOG4308	478	consensus LRR-containing protein [Function unknown	94.42
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.39
KOG4308	478	consensus LRR-containing protein [Function unknown	93.42
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.35
smart00370	26	LRR Leucine-rich repeats, outliers.	93.35
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.17
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.76
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.25
smart00370	26	LRR Leucine-rich repeats, outliers.	90.25
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.72
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.53
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	86.34
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.56
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.22

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.3e-51  Score=468.29  Aligned_cols=498  Identities=27%  Similarity=0.365  Sum_probs=356.2

Q ss_pred             CCCCCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-
Q 036984            1 FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-   79 (603)
Q Consensus         1 f~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-   79 (603)
                      |..+++|++|++++|.+..  .+.......+++|++|+|++|.+++...    ...+++|++|++++|.+....+..+. 
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~--~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~L~~L~Ls~n~~~~~~p~~~~~  162 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSG--PIPDDIFTTSSSLRYLNLSNNNFTGSIP----RGSIPNLETLDLSNNMLSGEIPNDIGS  162 (968)
T ss_pred             HhCCCCCCEEECCCCccCC--cCChHHhccCCCCCEEECcCCccccccC----ccccCCCCEEECcCCcccccCChHHhc
Confidence            4567888888888876642  1112222246788888888888765321    24578888888888888766666666 


Q ss_pred             CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEE
Q 036984           80 TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEEL  159 (603)
Q Consensus        80 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L  159 (603)
                      +++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..++++++|++|++++|.+.+.+|. .+..+++|++|
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L  241 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHL  241 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhcCCCCCEE
Confidence            88888888888888877888888888888888888888877888888888888888888888776776 67888888888


Q ss_pred             EccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcc
Q 036984          160 ILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNL  239 (603)
Q Consensus       160 ~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i  239 (603)
                      ++++|.+.+..+ ..+.++++|+.+++..+.........+..+.+|+.|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus       242 ~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        242 DLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             ECcCceeccccC-hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence            888888764333 3566777777777764433333333445566888888888888888888888888888888888888


Q ss_pred             cCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcc----------------cccCCcCcccC
Q 036984          240 SGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN----------------DLSYNRLQGSI  303 (603)
Q Consensus       240 ~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~----------------~l~~~~~~~~~  303 (603)
                      .+..|.+   +..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.                +++.|.+.+.+
T Consensus       321 ~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~  396 (968)
T PLN00113        321 TGKIPVA---LTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI  396 (968)
T ss_pred             CCcCChh---HhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC
Confidence            8777776   567788888888888887777766554 778888888887652                45566677778


Q ss_pred             CccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhccccccccc---CCC-CCCCcCCCCCC
Q 036984          304 PNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYY---DAV-APTWDHASAPA  379 (603)
Q Consensus       304 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~  379 (603)
                      |..++.+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..++......   ... ...........
T Consensus       397 p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~  476 (968)
T PLN00113        397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR  476 (968)
T ss_pred             CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccccc
Confidence            88888888888888888888888888888888888888888888877776554433221110   000 00111111223


Q ss_pred             eeEEecCCCC--CCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCC
Q 036984          380 LSYFSPNGSP--MGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY  457 (603)
Q Consensus       380 ~~~~~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  457 (603)
                      +..+...++.  ......+..+++|+.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..|.++++|+.||+++
T Consensus       477 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  556 (968)
T PLN00113        477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ  556 (968)
T ss_pred             ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCC
Confidence            3333333322  22233455677777888888888777777777778888888888888877777777778888888888


Q ss_pred             CcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCC
Q 036984          458 NLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQ  511 (603)
Q Consensus       458 N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~  511 (603)
                      |++++.+| .+..+++|+.|++++|++.+.+|.. +.+.++....+.|||.+|+.
T Consensus       557 N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~  610 (968)
T PLN00113        557 NQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGG  610 (968)
T ss_pred             CcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCC
Confidence            88877777 6777777888888888888777764 56666667777788877753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.7e-47  Score=437.68  Aligned_cols=499  Identities=27%  Similarity=0.365  Sum_probs=402.6

Q ss_pred             CCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCC
Q 036984            4 FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSL   83 (603)
Q Consensus         4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L   83 (603)
                      ..+++.|+++++.+....  ...+ ..+++|+.|+|++|++.+. +....+..+++|++|++++|.+++..+. ..+++|
T Consensus        68 ~~~v~~L~L~~~~i~~~~--~~~~-~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L  142 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKI--SSAI-FRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNL  142 (968)
T ss_pred             CCcEEEEEecCCCccccC--ChHH-hCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc-cccCCC
Confidence            346889999987764322  2222 3489999999999998753 2223456999999999999998765443 228999


Q ss_pred             CEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccC
Q 036984           84 QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSN  163 (603)
Q Consensus        84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~  163 (603)
                      ++|++++|.+.+..|..++++++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|. .+..+++|++|++++
T Consensus       143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~  221 (968)
T PLN00113        143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGY  221 (968)
T ss_pred             CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcC
Confidence            9999999999988999999999999999999999989999999999999999999999887777 889999999999999


Q ss_pred             ceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCC
Q 036984          164 NHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEF  243 (603)
Q Consensus       164 n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~  243 (603)
                      |.+.+..+ ..+.++++|+.+++..+.........+..+.+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+
T Consensus       222 n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  300 (968)
T PLN00113        222 NNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI  300 (968)
T ss_pred             CccCCcCC-hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence            99875443 45778888888888755444444445667789999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCc----------------ccccCCcCcccCCccc
Q 036984          244 PNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF----------------NDLSYNRLQGSIPNWI  307 (603)
Q Consensus       244 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l----------------~~l~~~~~~~~~~~~l  307 (603)
                      |.+   +..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+                ++++.|.+.+.+|.++
T Consensus       301 p~~---~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~  376 (968)
T PLN00113        301 PEL---VIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL  376 (968)
T ss_pred             Chh---HcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence            887   677899999999999998777766554 89999999999876                3566677777777777


Q ss_pred             cCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhccccccccc---CCCCCCC--cCCCCCCeeE
Q 036984          308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYY---DAVAPTW--DHASAPALSY  382 (603)
Q Consensus       308 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~  382 (603)
                      ..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.+|..+..++......   .......  .......+..
T Consensus       377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  456 (968)
T PLN00113        377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM  456 (968)
T ss_pred             hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence            7778888888888888878888888888888888888888888887776654322110   0000000  0112333444


Q ss_pred             EecCCCCCC-cchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCc
Q 036984          383 FSPNGSPMG-KEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH  461 (603)
Q Consensus       383 ~~~~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  461 (603)
                      +...++... ........++|+.|++++|++++..|..+..+++|+.|+|++|++++.+|..+.++++|+.|++++|.++
T Consensus       457 L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  536 (968)
T PLN00113        457 LSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS  536 (968)
T ss_pred             EECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence            443332211 1111223578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCC
Q 036984          462 GKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPL  513 (603)
Q Consensus       462 ~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~  513 (603)
                      +.+| .+..+++|+.|++++|++++.+|..+..+..++.+++++|++.+..|.
T Consensus       537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             ccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            9999 889999999999999999999999999999999999999999875553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.9e-42  Score=333.05  Aligned_cols=397  Identities=23%  Similarity=0.258  Sum_probs=307.1

Q ss_pred             CCcEEEccCCcCCCCCCCccccCCC--CCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984           33 SLRLLSLSYSRLNKNTILDQGFCQL--VHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE  109 (603)
Q Consensus        33 ~L~~L~Ls~n~i~~~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (603)
                      .-+.||.+++.+...  ....+.+.  +.-++|++++|.++++....|. +++|+.+.+..|.++. +|...+...+|+.
T Consensus        53 ~~~lldcs~~~lea~--~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~  129 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAI--DKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEK  129 (873)
T ss_pred             CceeeecCccccccc--cccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-cccccccccceeE
Confidence            445667777666542  11222222  2234577777777777777666 7777777777777766 5655555566777


Q ss_pred             EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984          110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY  189 (603)
Q Consensus       110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~  189 (603)
                      |+|.+|.|+.+-.+.++-++.|+.|||+.|.|+ .++...|..-.++++|++++|+|+.. ....|.             
T Consensus       130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l-~~~~F~-------------  194 (873)
T KOG4194|consen  130 LDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTL-ETGHFD-------------  194 (873)
T ss_pred             EeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeecccccccc-cccccc-------------
Confidence            777777777666666777777777777777776 46655666667777777777777621 111122             


Q ss_pred             eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccccc
Q 036984          190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGH  269 (603)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~  269 (603)
                                 .+.+|..|.|+.|+++...+..|.++++|+.|+|..|.|.-  -+++ .|.++++|+.|.+..|++. .
T Consensus       195 -----------~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri--ve~l-tFqgL~Sl~nlklqrN~I~-k  259 (873)
T KOG4194|consen  195 -----------SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI--VEGL-TFQGLPSLQNLKLQRNDIS-K  259 (873)
T ss_pred             -----------ccchheeeecccCcccccCHHHhhhcchhhhhhccccceee--ehhh-hhcCchhhhhhhhhhcCcc-c
Confidence                       22266677777777777777888889999999999998742  2221 2788999999999999998 7


Q ss_pred             CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984          270 IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG  349 (603)
Q Consensus       270 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  349 (603)
                      +..+.|-++.++++|+|+.|++..+.        ..|+-++.+|++|++++|.|..+-++.+...++|+.|+|+.|+++ 
T Consensus       260 L~DG~Fy~l~kme~l~L~~N~l~~vn--------~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-  330 (873)
T KOG4194|consen  260 LDDGAFYGLEKMEHLNLETNRLQAVN--------EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-  330 (873)
T ss_pred             ccCcceeeecccceeecccchhhhhh--------cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-
Confidence            88888888999999999999887665        345566999999999999999999999999999999999999998 


Q ss_pred             CCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEE
Q 036984          350 HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL  429 (603)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  429 (603)
                                                              ......+..+..|++|+|++|.+...-..+|..+++|+.|
T Consensus       331 ----------------------------------------~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L  370 (873)
T KOG4194|consen  331 ----------------------------------------RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL  370 (873)
T ss_pred             ----------------------------------------cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence                                                    3345566678899999999999997777889999999999


Q ss_pred             ecccccccccCC---cCCcCCCCCCEEeCCCCcCcccCC--CccCCCCCCceecccCcccccCCCcccccCCCCcccccC
Q 036984          430 NLSHNNLTGTIP---ITFSNLKQIESLDLSYNLLHGKIP--QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEG  504 (603)
Q Consensus       430 ~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~g  504 (603)
                      ||++|.|...+.   ..|.++++|+.|++.+|++. .+|  .|..+++|++|||.+|.+...-|+.|.++ .++.+-+..
T Consensus       371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             cCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            999999987654   34888999999999999999 666  89999999999999999999999999888 899999988


Q ss_pred             CcCCCCCCC
Q 036984          505 NPFLYGQPL  513 (603)
Q Consensus       505 n~~~c~~~~  513 (603)
                      -.++|+|.+
T Consensus       449 ssflCDCql  457 (873)
T KOG4194|consen  449 SSFLCDCQL  457 (873)
T ss_pred             cceEEeccH
Confidence            899996554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-39  Score=311.46  Aligned_cols=404  Identities=23%  Similarity=0.239  Sum_probs=335.2

Q ss_pred             CCEEEccCCcCCCCccCccc---CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEc
Q 036984           60 LQELYIRDNDLRDSLLGAWQ---TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDV  136 (603)
Q Consensus        60 L~~L~Ls~n~i~~~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  136 (603)
                      -+.||.+.+.+..+....+.   ...-+.|++++|++..+.+..|.++++|+.+++.+|.++ .+|..-....+|+.|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            35689999988887665554   455678999999999988999999999999999999998 67776666677999999


Q ss_pred             ccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCC
Q 036984          137 SYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDD  216 (603)
Q Consensus       137 ~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  216 (603)
                      .+|.|+ .+..+.+..++.|+.||++.|.++....                         +.+....++++|+|++|+++
T Consensus       133 ~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~-------------------------~sfp~~~ni~~L~La~N~It  186 (873)
T KOG4194|consen  133 RHNLIS-SVTSEELSALPALRSLDLSRNLISEIPK-------------------------PSFPAKVNIKKLNLASNRIT  186 (873)
T ss_pred             eccccc-cccHHHHHhHhhhhhhhhhhchhhcccC-------------------------CCCCCCCCceEEeecccccc
Confidence            999998 4666689999999999999998862211                         23444558999999999999


Q ss_pred             CCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccC
Q 036984          217 GTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSY  296 (603)
Q Consensus       217 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  296 (603)
                      ......|..+.+|..|.|+.|+++..-+..   |..+++|+.|+|..|++. .+....|+++++|+.|.+..|.+..+..
T Consensus       187 ~l~~~~F~~lnsL~tlkLsrNrittLp~r~---Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~D  262 (873)
T KOG4194|consen  187 TLETGHFDSLNSLLTLKLSRNRITTLPQRS---FKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDD  262 (873)
T ss_pred             ccccccccccchheeeecccCcccccCHHH---hhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccC
Confidence            999999999999999999999998444443   677999999999999997 6667788889999999999999987775


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCC
Q 036984          297 NRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHAS  376 (603)
Q Consensus       297 ~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (603)
                      ..|.|        +.++++|+|+.|+++..-..++.++++|+.|++|+|.|...-+                        
T Consensus       263 G~Fy~--------l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~------------------------  310 (873)
T KOG4194|consen  263 GAFYG--------LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI------------------------  310 (873)
T ss_pred             cceee--------ecccceeecccchhhhhhcccccccchhhhhccchhhhheeec------------------------
Confidence            55554        8999999999999998888899999999999999999973322                        


Q ss_pred             CCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCC
Q 036984          377 APALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLS  456 (603)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  456 (603)
                                       ......++|++|+|++|+|+...+..|..+..|++|+|++|.++.+....|..+++|++|||+
T Consensus       311 -----------------d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  311 -----------------DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             -----------------chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence                             233447899999999999998888999999999999999999998888889999999999999


Q ss_pred             CCcCcccCC----CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCC---------------CC--CC
Q 036984          457 YNLLHGKIP----QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQ---------------PL--SK  515 (603)
Q Consensus       457 ~N~l~~~~~----~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~---------------~~--~~  515 (603)
                      +|.++..+.    .+..+++|+.|++.+|++...-...+.++..++++++.+|+..--.               ..  -|
T Consensus       374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflC  453 (873)
T KOG4194|consen  374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLC  453 (873)
T ss_pred             CCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEE
Confidence            999987665    5778999999999999999766688899999999999999864421               11  24


Q ss_pred             CCCCC-----------CCCcccccccccccCCCCccccc
Q 036984          516 SCDDN-----------GLTTVTTEAYTENEEGGSLIDMD  543 (603)
Q Consensus       516 ~C~~~-----------~~~~~~~~~~~~~~~~~~~~~~~  543 (603)
                      +|...           .......|++|+...+.....++
T Consensus       454 DCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd  492 (873)
T KOG4194|consen  454 DCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVD  492 (873)
T ss_pred             eccHHHHHHHHHhcccccceeeeccCCcccccceeEeec
Confidence            56522           22334568888876666655544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=3.9e-36  Score=280.79  Aligned_cols=413  Identities=27%  Similarity=0.375  Sum_probs=244.0

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLREL  110 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  110 (603)
                      +..+.+|++++|++..   .+.+++.+..++.++.++|+++.+++......+++++++++|.+.. .|+.++.+-.|+.+
T Consensus        67 L~~l~vl~~~~n~l~~---lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl  142 (565)
T KOG0472|consen   67 LACLTVLNVHDNKLSQ---LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDL  142 (565)
T ss_pred             ccceeEEEeccchhhh---CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhh
Confidence            5556666666666543   3445556666666666666666666555556666666666666655 44556666666666


Q ss_pred             eccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeecccee
Q 036984          111 YIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYL  190 (603)
Q Consensus       111 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~  190 (603)
                      +..+|+++ ..|.++.++.+|..+++.+|++. ..|+ ..-.++.|++|+...|.+....  ..+..+++|..+.+..+.
T Consensus       143 ~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~-~~i~m~~L~~ld~~~N~L~tlP--~~lg~l~~L~~LyL~~Nk  217 (565)
T KOG0472|consen  143 DATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPE-NHIAMKRLKHLDCNSNLLETLP--PELGGLESLELLYLRRNK  217 (565)
T ss_pred             hccccccc-cCchHHHHHHHHHHhhccccchh-hCCH-HHHHHHHHHhcccchhhhhcCC--hhhcchhhhHHHHhhhcc
Confidence            66666665 45556666666666666666665 3444 2333666666666666554211  245555555555554222


Q ss_pred             eeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccC
Q 036984          191 ETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHI  270 (603)
Q Consensus       191 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~  270 (603)
                      .  ...+.|..+..|.++.++.|.+.-...+...+++++..||+..|++. ..|+.   +..+.+|+.||+|+|.++ .+
T Consensus       218 i--~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde---~clLrsL~rLDlSNN~is-~L  290 (565)
T KOG0472|consen  218 I--RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE---ICLLRSLERLDLSNNDIS-SL  290 (565)
T ss_pred             c--ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH---HHHhhhhhhhcccCCccc-cC
Confidence            2  12335666667777888777776544555567888888888888886 55654   455677888888888887 67


Q ss_pred             ChhhhhcCCCCcEEecCCCCcc---------------------------------------------------------c
Q 036984          271 PVEIGTYLPGLMHLNLSRNAFN---------------------------------------------------------D  293 (603)
Q Consensus       271 ~~~~~~~l~~L~~L~L~~n~l~---------------------------------------------------------~  293 (603)
                      |..++. + .|+.|-+.+|.+.                                                         +
T Consensus       291 p~sLgn-l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~  368 (565)
T KOG0472|consen  291 PYSLGN-L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD  368 (565)
T ss_pred             Cccccc-c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence            877766 5 7888888888761                                                         0


Q ss_pred             ccCCcCcccCCccccCCC---CCCEEeccCCcCcccCCccccCCCCCC-EEecCCCcCccCCChhhhcccccccccCCCC
Q 036984          294 LSYNRLQGSIPNWIDRLP---QISYLLLANNYIEGEIPAQLCQLKEVR-LIDLSHNNLSGHIPFCLVNTALSEGYYDAVA  369 (603)
Q Consensus       294 l~~~~~~~~~~~~l~~l~---~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~  369 (603)
                      ++.-.++ .+|.....-.   -.+..+++.|++. ++|..+..+..+. .+.+++|.+. .+|                 
T Consensus       369 ~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~-----------------  428 (565)
T KOG0472|consen  369 VSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVP-----------------  428 (565)
T ss_pred             ccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cch-----------------
Confidence            1111111 1111111111   1455566666655 4444444443333 3344444442 222                 


Q ss_pred             CCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCC
Q 036984          370 PTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQ  449 (603)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  449 (603)
                                              ..+..+++|..|+|++|-+. .+|..++.+..|+.|+|+.|++. ..|.+.-.+..
T Consensus       429 ------------------------~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~  482 (565)
T KOG0472|consen  429 ------------------------LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT  482 (565)
T ss_pred             ------------------------HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence                                    22333556666777666666 55666666666777777777666 56666655566


Q ss_pred             CCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCC
Q 036984          450 IESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFL  508 (603)
Q Consensus       450 L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~  508 (603)
                      ++.+-.++|++....| .+..+..|..||+.+|.+. .+|..++.+..++++.+.|||+-
T Consensus       483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            6666666666664444 4666666677777777666 45555666666777777777664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=1.1e-35  Score=277.77  Aligned_cols=433  Identities=24%  Similarity=0.323  Sum_probs=320.7

Q ss_pred             CCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEe
Q 036984           32 ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELY  111 (603)
Q Consensus        32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (603)
                      ..++.+.+++|.+..   ....+.++..|.+|++++|++...++.+..+..++.++.++|++.. +|..+..+.+|+.++
T Consensus        45 v~l~~lils~N~l~~---l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV---LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchhh---ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhh
Confidence            457788888888764   3356778888888888888888888877778888888888888876 777788888888888


Q ss_pred             ccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceee
Q 036984          112 IDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLE  191 (603)
Q Consensus       112 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~  191 (603)
                      .++|.+. ..|+.++.+..|+.++..+|+++ ..|. .+..+.++..+++.+|.++...+                    
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l~~l~~--------------------  177 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKLKALPE--------------------  177 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhccccccc-cCch-HHHHHHHHHHhhccccchhhCCH--------------------
Confidence            8888887 67777888888888888888887 5666 67788888888888887752211                    


Q ss_pred             eccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCC
Q 036984          192 TESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIP  271 (603)
Q Consensus       192 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~  271 (603)
                            .......|++++...|.+ +.+|..++.+.+|..|++..|++. ..|+    |.++..|.+++++.|.+. .+|
T Consensus       178 ------~~i~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lPe----f~gcs~L~Elh~g~N~i~-~lp  244 (565)
T KOG0472|consen  178 ------NHIAMKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLPE----FPGCSLLKELHVGENQIE-MLP  244 (565)
T ss_pred             ------HHHHHHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCCC----CCccHHHHHHHhcccHHH-hhH
Confidence                  011123566666666655 467888999999999999999997 6675    788999999999999998 999


Q ss_pred             hhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCC
Q 036984          272 VEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHI  351 (603)
Q Consensus       272 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  351 (603)
                      .+....++++..||+++|++.         ..|..+.-+.+|.+||+++|.++ ..|..++++ .|+.|-+.+|++. .+
T Consensus       245 ae~~~~L~~l~vLDLRdNklk---------e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-Ti  312 (565)
T KOG0472|consen  245 AEHLKHLNSLLVLDLRDNKLK---------EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TI  312 (565)
T ss_pred             HHHhcccccceeeeccccccc---------cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HH
Confidence            999988999999999999887         55777777889999999999999 577789999 8999999999985 22


Q ss_pred             Chhhhccc------------ccccccC-------CCC-CCCcC---CCCCCeeEEecCC--CCCCcchhhh---------
Q 036984          352 PFCLVNTA------------LSEGYYD-------AVA-PTWDH---ASAPALSYFSPNG--SPMGKEETVQ---------  397 (603)
Q Consensus       352 ~~~~~~~~------------~~~~~~~-------~~~-~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~---------  397 (603)
                      ...+.+..            ..++...       ... +.+.+   ....+...++.++  ......+.|.         
T Consensus       313 Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~  392 (565)
T KOG0472|consen  313 RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTS  392 (565)
T ss_pred             HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEE
Confidence            22221111            0000000       000 00000   0011111111111  0011111111         


Q ss_pred             ----------------hccc-ceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcC
Q 036984          398 ----------------ILTS-MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL  460 (603)
Q Consensus       398 ----------------~l~~-L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  460 (603)
                                      .+.. ++.+.+++|.+. .+|..+..+++|..|+|++|.+. .+|..++.+..|+.||+|+|++
T Consensus       393 VnfskNqL~elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF  470 (565)
T KOG0472|consen  393 VNFSKNQLCELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF  470 (565)
T ss_pred             EecccchHhhhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc
Confidence                            1111 234677777777 88889999999999999999998 7899999999999999999999


Q ss_pred             cccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCCCCCCCC
Q 036984          461 HGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDD  519 (603)
Q Consensus       461 ~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~~~~C~~  519 (603)
                      . .+| .+-.+..++.+-.++|++....|++++.+..+..++++.|...--+|.-..|..
T Consensus       471 r-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnmtn  529 (565)
T KOG0472|consen  471 R-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTN  529 (565)
T ss_pred             c-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccc
Confidence            8 677 555566777777788999988888899999999999999998887776667753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=9.2e-33  Score=271.46  Aligned_cols=370  Identities=24%  Similarity=0.320  Sum_probs=203.6

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLREL  110 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  110 (603)
                      ++-.+-.|+++|.+++.. .|.....++.++-|.|...++..+|.+.-.+.+|++|.+++|++.. +-+.+..++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~-FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDR-FPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCc-CchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHH
Confidence            456677777888777643 4556667777777777777777766655557778888888887776 44567777777777


Q ss_pred             eccCCCCcc-CcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984          111 YIDNNDLSG-SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY  189 (603)
Q Consensus       111 ~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~  189 (603)
                      .+.+|+++. -+|..+.++..|.+||||+|++. ..|. .+.+..++-+|++++|.|. .++-.-+.+|+          
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~-~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLt----------  150 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPT-NLEYAKNSIVLNLSYNNIE-TIPNSLFINLT----------  150 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcch-hhhhhcCcEEEEcccCccc-cCCchHHHhhH----------
Confidence            777777642 35555667777888888888776 4666 6777777777777777765 22211111111          


Q ss_pred             eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccc-c
Q 036984          190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQ-G  268 (603)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~-~  268 (603)
                                    .|-.|+++.|++. ..|.....+..|++|+|++|.+...--..   +..+++|+.|.+++.+-+ .
T Consensus       151 --------------DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ---LPsmtsL~vLhms~TqRTl~  212 (1255)
T KOG0444|consen  151 --------------DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQ---LPSMTSLSVLHMSNTQRTLD  212 (1255)
T ss_pred             --------------hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhc---Cccchhhhhhhcccccchhh
Confidence                          3334444444432 34445555555666666665543110000   222344444444443211 1


Q ss_pred             cCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCc
Q 036984          269 HIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS  348 (603)
Q Consensus       269 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  348 (603)
                      .+                                 |..+..+.+|+.+|++.|.+. .+|+.+..+++|+.|+||+|+++
T Consensus       213 N~---------------------------------Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  213 NI---------------------------------PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             cC---------------------------------CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence            33                                 444444555555555555554 45555555555555555555554


Q ss_pred             cCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCE
Q 036984          349 GHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA  428 (603)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  428 (603)
                      . +..                                         ....-.+|++|++|.|+++ ..|.++..+++|+.
T Consensus       259 e-L~~-----------------------------------------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k  295 (1255)
T KOG0444|consen  259 E-LNM-----------------------------------------TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK  295 (1255)
T ss_pred             e-eec-----------------------------------------cHHHHhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence            1 000                                         0011134555555555555 45555555555555


Q ss_pred             Eecccccccc-cCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCc
Q 036984          429 LNLSHNNLTG-TIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNP  506 (603)
Q Consensus       429 L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~  506 (603)
                      |++.+|+++- -+|+.++++.+|+.+..++|++. ..| ++..+..|+.|.|++|++. ..|+.+.-++.++.+++..||
T Consensus       296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             HHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            5555555442 24555555555555555555555 344 5555555555555555555 345555555555555555555


Q ss_pred             CCCCCC
Q 036984          507 FLYGQP  512 (603)
Q Consensus       507 ~~c~~~  512 (603)
                      -+-.+|
T Consensus       374 nLVMPP  379 (1255)
T KOG0444|consen  374 NLVMPP  379 (1255)
T ss_pred             CccCCC
Confidence            555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=5.2e-32  Score=266.20  Aligned_cols=336  Identities=24%  Similarity=0.317  Sum_probs=224.1

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcC--CCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCc
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDL--RDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLR  108 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  108 (603)
                      +.+|++|.+++|++...   ...+..++.||.+++++|++  +++|+++|.+..|+.||||+|++.. .|..+..-+++-
T Consensus        54 lqkLEHLs~~HN~L~~v---hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~i  129 (1255)
T KOG0444|consen   54 LQKLEHLSMAHNQLISV---HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSI  129 (1255)
T ss_pred             HhhhhhhhhhhhhhHhh---hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcE
Confidence            55666666666665432   23456666666666666665  3566666666666666666666665 556666666666


Q ss_pred             EEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccc
Q 036984          109 ELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI  188 (603)
Q Consensus       109 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~  188 (603)
                      .|+||+|+|.++....|.+++.|-+||||+|.+. .+|+ ....+..|++|++++|++. .....++             
T Consensus       130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~-hfQLrQL-------------  193 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLN-HFQLRQL-------------  193 (1255)
T ss_pred             EEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhh-HHHHhcC-------------
Confidence            6666666666444445666666666666666664 4555 4566666666666666553 1111122             


Q ss_pred             eeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCccc-CCCCCCCccccccCCccEEEccCcccc
Q 036984          189 YLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLS-GEFPNWLMPIHCLQKLATLDVSNNFFQ  267 (603)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~  267 (603)
                                                         ..+++|+.|.+++.+-+ ..+|.+   +..+.+|..+|+|.|.+.
T Consensus       194 -----------------------------------PsmtsL~vLhms~TqRTl~N~Pts---ld~l~NL~dvDlS~N~Lp  235 (1255)
T KOG0444|consen  194 -----------------------------------PSMTSLSVLHMSNTQRTLDNIPTS---LDDLHNLRDVDLSENNLP  235 (1255)
T ss_pred             -----------------------------------ccchhhhhhhcccccchhhcCCCc---hhhhhhhhhccccccCCC
Confidence                                               23334444444443321 234544   455677788888888877


Q ss_pred             ccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcC
Q 036984          268 GHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNL  347 (603)
Q Consensus       268 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  347 (603)
                       .+|..++. +++|+.|+||+|.++.+..         ..+...+|++|+++.|+++ ..|.+++.+++|+.|.+.+|++
T Consensus       236 -~vPecly~-l~~LrrLNLS~N~iteL~~---------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  236 -IVPECLYK-LRNLRRLNLSGNKITELNM---------TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKL  303 (1255)
T ss_pred             -cchHHHhh-hhhhheeccCcCceeeeec---------cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcc
Confidence             77777766 7888888888888876542         2233467888899999988 7888889999999999988888


Q ss_pred             cc-CCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcC
Q 036984          348 SG-HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRI  426 (603)
Q Consensus       348 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  426 (603)
                      +- -+|.                                         .++.+..|+.+..++|.+. .+|+.+..|..|
T Consensus       304 ~FeGiPS-----------------------------------------GIGKL~~Levf~aanN~LE-lVPEglcRC~kL  341 (1255)
T KOG0444|consen  304 TFEGIPS-----------------------------------------GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL  341 (1255)
T ss_pred             cccCCcc-----------------------------------------chhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence            62 2332                                         3344667888888888887 888999999999


Q ss_pred             CEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecc
Q 036984          427 RALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVA  479 (603)
Q Consensus       427 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~  479 (603)
                      +.|.|++|++. .+|+.+.-++.|+.||+..|+-.-.+| .-..-++|..-++.
T Consensus       342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             HHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            99999999988 788998888999999999998664555 22223556555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=5.4e-32  Score=278.01  Aligned_cols=458  Identities=25%  Similarity=0.297  Sum_probs=275.7

Q ss_pred             CceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCEE
Q 036984            7 LEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQEL   86 (603)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L   86 (603)
                      +..|+++.|.....+  ..+... .-+|+.||+++|.+..   .+..+..+++|+.|.++.|.|...+.....+.+|+++
T Consensus        23 ~~~ln~~~N~~l~~p--l~~~~~-~v~L~~l~lsnn~~~~---fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~l   96 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRP--LEFVEK-RVKLKSLDLSNNQISS---FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYL   96 (1081)
T ss_pred             HHhhhccccccccCc--hHHhhh-eeeeEEeecccccccc---CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhh
Confidence            455666665554433  233333 3348888888887765   3455677788888888888887777555557888888


Q ss_pred             EccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCcee
Q 036984           87 NVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF  166 (603)
Q Consensus        87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~  166 (603)
                      .|.+|.+.. .|..+..+++|++|+++.|.+. ..|..+..+..++.+..++|.-...++.     . .++++++..|.+
T Consensus        97 nL~~n~l~~-lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~-~ik~~~l~~n~l  168 (1081)
T KOG0618|consen   97 NLKNNRLQS-LPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ-----T-SIKKLDLRLNVL  168 (1081)
T ss_pred             eeccchhhc-CchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc-----c-cchhhhhhhhhc
Confidence            888887776 7777888888888888888876 5666666666666666666621111111     1 144455554444


Q ss_pred             eeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCC
Q 036984          167 QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNW  246 (603)
Q Consensus       167 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  246 (603)
                      ..... ....+++.  .+++..+...   ..++..+.+++.+....|++...    -..-++++.|+.++|.++...+. 
T Consensus       169 ~~~~~-~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~-  237 (1081)
T KOG0618|consen  169 GGSFL-IDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH-  237 (1081)
T ss_pred             ccchh-cchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc-
Confidence            32211 11222222  1222211110   11122223444444444443211    11234566666666666532221 


Q ss_pred             CccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCccc
Q 036984          247 LMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGE  326 (603)
Q Consensus       247 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (603)
                          ....+|++++++.|+++ .+|..+.. +++|+.++..+|.+.         .+|..+....+|+.|....|.+. .
T Consensus       238 ----p~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~---------~lp~ri~~~~~L~~l~~~~nel~-y  301 (1081)
T KOG0618|consen  238 ----PVPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANHNRLV---------ALPLRISRITSLVSLSAAYNELE-Y  301 (1081)
T ss_pred             ----cccccceeeecchhhhh-cchHHHHh-cccceEecccchhHH---------hhHHHHhhhhhHHHHHhhhhhhh-h
Confidence                12356777777777776 56644443 667777666666654         33444455566666666666665 4


Q ss_pred             CCccccCCCCCCEEecCCCcCccCCChhhhccccc-cccc----CCCC--CCCcCCCCCCee--EEecCCCCCCcchhhh
Q 036984          327 IPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALS-EGYY----DAVA--PTWDHASAPALS--YFSPNGSPMGKEETVQ  397 (603)
Q Consensus       327 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~-~~~~----~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  397 (603)
                      +|....+++.|++|||..|++. .+|+.+...... ....    ....  +.........+.  ++..+.........+.
T Consensus       302 ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~  380 (1081)
T KOG0618|consen  302 IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV  380 (1081)
T ss_pred             CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence            4445555666666666666664 334322211100 0000    0000  001111111111  2223333334445667


Q ss_pred             hcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCcee
Q 036984          398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFR  477 (603)
Q Consensus       398 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~  477 (603)
                      .+.+|+.|+|++|++.......+.+++.|++|+||+|+++ .+|+.+.++..|++|...+|.+. ..|.++.++.|+.+|
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lD  458 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLD  458 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEe
Confidence            7889999999999998666667888999999999999999 77888999999999999999998 677999999999999


Q ss_pred             cccCccccc-CCCcccccCCCCcccccCCcCCC
Q 036984          478 VAYNNLSGK-IPDRVAQFSTFEEDSYEGNPFLY  509 (603)
Q Consensus       478 l~~N~l~~~-~p~~~~~l~~l~~~~l~gn~~~c  509 (603)
                      ++.|+++.. +|. ....+.++.++++||+++-
T Consensus       459 lS~N~L~~~~l~~-~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPE-ALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             cccchhhhhhhhh-hCCCcccceeeccCCcccc
Confidence            999999863 443 2344899999999999754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.95  E-value=3.4e-30  Score=264.88  Aligned_cols=423  Identities=24%  Similarity=0.290  Sum_probs=289.6

Q ss_pred             CCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCE
Q 036984            6 NLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQE   85 (603)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~   85 (603)
                      +|++|+|++|.+..-+.    ....+++|+.|+++.|.|..   .+.+..++++|++|.|.+|.+...|.+.-.+++|++
T Consensus        46 ~L~~l~lsnn~~~~fp~----~it~l~~L~~ln~s~n~i~~---vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~  118 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPI----QITLLSHLRQLNLSRNYIRS---VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQY  118 (1081)
T ss_pred             eeEEeeccccccccCCc----hhhhHHHHhhcccchhhHhh---CchhhhhhhcchhheeccchhhcCchhHHhhhcccc
Confidence            48999999988753332    22336789999999999875   446788899999999999998887766655999999


Q ss_pred             EEccCCCCCcCCchhhcCCCCCcEEeccCC-------------------CCccCcCccCCCCCCCCEEEcccCcCCccCC
Q 036984           86 LNVASNKLTRNFPLGLCELVLLRELYIDNN-------------------DLSGSLPLCLTNLTSLQVLDVSYNQLTESIS  146 (603)
Q Consensus        86 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-------------------~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  146 (603)
                      |+++.|.+.. .|..+..+..++.+..++|                   .+.+.++.....+..  .|+|+.|.+. . .
T Consensus       119 LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~-~  193 (1081)
T KOG0618|consen  119 LDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V-L  193 (1081)
T ss_pred             cccchhccCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h-h
Confidence            9999999876 6666666666666666666                   222222222222222  3555555443 1 1


Q ss_pred             cccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccC
Q 036984          147 SSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQ  226 (603)
Q Consensus       147 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  226 (603)
                        .+..+++|+.+....|+++....  .-..++.|...++...     ....-....+++.++++.+++... |.++..+
T Consensus       194 --dls~~~~l~~l~c~rn~ls~l~~--~g~~l~~L~a~~n~l~-----~~~~~p~p~nl~~~dis~n~l~~l-p~wi~~~  263 (1081)
T KOG0618|consen  194 --DLSNLANLEVLHCERNQLSELEI--SGPSLTALYADHNPLT-----TLDVHPVPLNLQYLDISHNNLSNL-PEWIGAC  263 (1081)
T ss_pred             --hhhhccchhhhhhhhcccceEEe--cCcchheeeeccCcce-----eeccccccccceeeecchhhhhcc-hHHHHhc
Confidence              23444555555555554432111  0111222222222111     001111223889999999988754 5999999


Q ss_pred             CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcc-----
Q 036984          227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQG-----  301 (603)
Q Consensus       227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~-----  301 (603)
                      .+|+.++..+|.++ ..|..   +....+|+.|++..|.+. .+|..... .++|++|+|..|.+.++..+.+.-     
T Consensus       264 ~nle~l~~n~N~l~-~lp~r---i~~~~~L~~l~~~~nel~-yip~~le~-~~sL~tLdL~~N~L~~lp~~~l~v~~~~l  337 (1081)
T KOG0618|consen  264 ANLEALNANHNRLV-ALPLR---ISRITSLVSLSAAYNELE-YIPPFLEG-LKSLRTLDLQSNNLPSLPDNFLAVLNASL  337 (1081)
T ss_pred             ccceEecccchhHH-hhHHH---HhhhhhHHHHHhhhhhhh-hCCCcccc-cceeeeeeehhccccccchHHHhhhhHHH
Confidence            99999999999985 45544   556778888888888887 77765554 778888888888875554432221     


Q ss_pred             -----------cCCccc--cCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCC
Q 036984          302 -----------SIPNWI--DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAV  368 (603)
Q Consensus       302 -----------~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~  368 (603)
                                 ..| ..  ..++.|+.|++.+|.+++..-..+.++..|+.|+|++|++. .+|+               
T Consensus       338 ~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpa---------------  400 (1081)
T KOG0618|consen  338 NTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPA---------------  400 (1081)
T ss_pred             HHHhhhhccccccc-cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCH---------------
Confidence                       111 11  12567899999999999887788999999999999999996 3443               


Q ss_pred             CCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCC
Q 036984          369 APTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLK  448 (603)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  448 (603)
                                               ..+..+..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.+++
T Consensus       401 -------------------------s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~  452 (1081)
T KOG0618|consen  401 -------------------------SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLP  452 (1081)
T ss_pred             -------------------------HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcC
Confidence                                     33455788999999999999 77899999999999999999999 777 788999


Q ss_pred             CCCEEeCCCCcCcccCCCccCC-CCCCceecccCcccccCCCcccccCCCCccc
Q 036984          449 QIESLDLSYNLLHGKIPQLIVL-TTLAVFRVAYNNLSGKIPDRVAQFSTFEEDS  501 (603)
Q Consensus       449 ~L~~L~Ls~N~l~~~~~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~  501 (603)
                      .|+.+|+|.|.++...-..... +.|++||+++|.-.-..-..+..+..+...+
T Consensus       453 qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~  506 (1081)
T KOG0618|consen  453 QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMD  506 (1081)
T ss_pred             cceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhhee
Confidence            9999999999998533322233 8999999999974323333344444443333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=2.8e-29  Score=234.72  Aligned_cols=304  Identities=21%  Similarity=0.170  Sum_probs=227.2

Q ss_pred             cccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccC-CCCCcC
Q 036984           19 VNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVAS-NKLTRN   96 (603)
Q Consensus        19 ~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~-n~l~~~   96 (603)
                      ..+++.++|.++++....+.|..|+|+.  +.+.+|+.+++||.||||+|.|+.|.+++|+ ++++..|.+.+ |+|+.+
T Consensus        54 r~~GL~eVP~~LP~~tveirLdqN~I~~--iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   54 RGKGLTEVPANLPPETVEIRLDQNQISS--IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             cCCCcccCcccCCCcceEEEeccCCccc--CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence            3477888999999999999999999985  3567899999999999999999999999999 88887777666 899998


Q ss_pred             CchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccC
Q 036984           97 FPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLS  176 (603)
Q Consensus        97 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~  176 (603)
                      ..+.|.++..|+.|.+.-|++.-+..++|..+++|..|.+.+|.+. .++...|..+..++.+.+..|++.......++.
T Consensus       132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla  210 (498)
T KOG4237|consen  132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA  210 (498)
T ss_pred             hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhh
Confidence            8889999999999999999998888889999999999999999997 677778999999999999999865443322221


Q ss_pred             CCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccC-CCCCEEEcCCCcccCCCCCCCccccccCC
Q 036984          177 NLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQ-HDLKNADLSHLNLSGEFPNWLMPIHCLQK  255 (603)
Q Consensus       177 ~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~~~~l~~  255 (603)
                      .-....      .       ..+..........+.+.++....+..+... ..+..--.+.+...+..|..  .|..+++
T Consensus       211 ~~~a~~------~-------ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~--cf~~L~~  275 (498)
T KOG4237|consen  211 DDLAMN------P-------IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK--CFKKLPN  275 (498)
T ss_pred             hHHhhc------h-------hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH--HHhhccc
Confidence            100000      0       000111122222233333322222222211 11111122233333344432  2778999


Q ss_pred             ccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCC
Q 036984          256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLK  335 (603)
Q Consensus       256 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  335 (603)
                      |+.|++++|.++ .|....|++...++.|.|..|++..++...|.        ++..|+.|+|.+|+|+...|.+|..+.
T Consensus       276 L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~--------~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  276 LRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ--------GLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             ceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhh--------ccccceeeeecCCeeEEEecccccccc
Confidence            999999999998 78788888899999999999998877754444        488999999999999999999999999


Q ss_pred             CCCEEecCCCcCcc
Q 036984          336 EVRLIDLSHNNLSG  349 (603)
Q Consensus       336 ~L~~L~Ls~n~l~~  349 (603)
                      +|.+|++-.|++..
T Consensus       347 ~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  347 SLSTLNLLSNPFNC  360 (498)
T ss_pred             eeeeeehccCcccC
Confidence            99999999999863

>PLN03210 Resistant to P

Probab=99.91  E-value=4.4e-23  Score=236.67  Aligned_cols=361  Identities=19%  Similarity=0.227  Sum_probs=219.4

Q ss_pred             CcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCC------CCccCccc--CCCCCEEEccCCCCCcCCchhhcCCC
Q 036984           34 LRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLR------DSLLGAWQ--TTSLQELNVASNKLTRNFPLGLCELV  105 (603)
Q Consensus        34 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~  105 (603)
                      .+.+.+....+....+...+|.++++|+.|.+..+...      ...+..|.  ..+|+.|.+.++.+.. .|..| ...
T Consensus       534 v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~  611 (1153)
T PLN03210        534 VLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RPE  611 (1153)
T ss_pred             eeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-Ccc
Confidence            33333433334333344567888888888888665321      12233333  4568888888888776 56656 467


Q ss_pred             CCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceee
Q 036984          106 LLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFN  185 (603)
Q Consensus       106 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~  185 (603)
                      +|+.|++++|.+. .+|..+..+++|+.|+|+++.....+|.  +..+++|++|++++|......+ ..+.         
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp-~si~---------  678 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP-SSIQ---------  678 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc-hhhh---------
Confidence            8888888888887 5677788888888888887754445665  7778888888888875322211 1122         


Q ss_pred             ccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcc
Q 036984          186 GEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNF  265 (603)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~  265 (603)
                                     .+.+|+.|++++|.....+|..+ .+++|+.|++++|...+.+|..      .++|+.|++++|.
T Consensus       679 ---------------~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~------~~nL~~L~L~~n~  736 (1153)
T PLN03210        679 ---------------YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI------STNISWLDLDETA  736 (1153)
T ss_pred             ---------------ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc------cCCcCeeecCCCc
Confidence                           23366666776665545555544 5677788888777655555542      3567788888887


Q ss_pred             ccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCC
Q 036984          266 FQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN  345 (603)
Q Consensus       266 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  345 (603)
                      +. .+|..+  .+++|+.|++.++....+... +....+......++|+.|++++|.....+|..++.+++|+.|++++|
T Consensus       737 i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~-~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C  812 (1153)
T PLN03210        737 IE-EFPSNL--RLENLDELILCEMKSEKLWER-VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC  812 (1153)
T ss_pred             cc-cccccc--cccccccccccccchhhcccc-ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence            76 666544  266777777766443222211 11111222233467888888887766677777888888888888877


Q ss_pred             cCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCc
Q 036984          346 NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTR  425 (603)
Q Consensus       346 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  425 (603)
                      ...+.+|...                                          .+++|+.|++++|.....+|..   .++
T Consensus       813 ~~L~~LP~~~------------------------------------------~L~sL~~L~Ls~c~~L~~~p~~---~~n  847 (1153)
T PLN03210        813 INLETLPTGI------------------------------------------NLESLESLDLSGCSRLRTFPDI---STN  847 (1153)
T ss_pred             CCcCeeCCCC------------------------------------------CccccCEEECCCCCcccccccc---ccc
Confidence            6544444211                                          2456666666665443333322   245


Q ss_pred             CCEEecccccccccCCcCCcCCCCCCEEeCCCC-cCcccCC-CccCCCCCCceecccCc
Q 036984          426 IRALNLSHNNLTGTIPITFSNLKQIESLDLSYN-LLHGKIP-QLIVLTTLAVFRVAYNN  482 (603)
Q Consensus       426 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~l~~L~~L~l~~N~  482 (603)
                      |+.|+|++|.++ .+|..+..+++|+.|++++| ++. .+| ....+++|+.+++++|.
T Consensus       848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence            666666666666 45556666666666666663 333 333 45556666666666553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=1.7e-22  Score=231.82  Aligned_cols=339  Identities=22%  Similarity=0.260  Sum_probs=235.7

Q ss_pred             HhcCCCcEEEccCCcCCCC----CCCccccCCCC-CCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcC
Q 036984           29 ELMASLRLLSLSYSRLNKN----TILDQGFCQLV-HLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCE  103 (603)
Q Consensus        29 ~~~~~L~~L~Ls~n~i~~~----~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  103 (603)
                      ..+++|+.|.+..+.....    ...+..|..++ +|+.|++.++.+..+|.. |.+.+|++|++++|++.. ++..+..
T Consensus       555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f~~~~L~~L~L~~s~l~~-L~~~~~~  632 (1153)
T PLN03210        555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-FRPENLVKLQMQGSKLEK-LWDGVHS  632 (1153)
T ss_pred             hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-CCccCCcEEECcCccccc-ccccccc
Confidence            3478888888866543210    11344565654 588888888888777554 457888888888888776 5666788


Q ss_pred             CCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCce
Q 036984          104 LVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKA  183 (603)
Q Consensus       104 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~  183 (603)
                      +++|+.|+|+++.....+|. +..+++|++|++++|.....+|. .+..+++|+.|++++|......+..          
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~----------  700 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTG----------  700 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCc----------
Confidence            88888888887754435553 77788888888888766556776 6788888888888876422111110          


Q ss_pred             eeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccC
Q 036984          184 FNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSN  263 (603)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~  263 (603)
                                      ..+.+|+.|++++|.....+|..   ..+|+.|++++|.+. .+|..    ..+++|+.|++.+
T Consensus       701 ----------------i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~----~~l~~L~~L~l~~  756 (1153)
T PLN03210        701 ----------------INLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN----LRLENLDELILCE  756 (1153)
T ss_pred             ----------------CCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc----ccccccccccccc
Confidence                            01236667777776554444432   356788888888775 45553    2467777787776


Q ss_pred             cccc---c---cCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCC
Q 036984          264 NFFQ---G---HIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEV  337 (603)
Q Consensus       264 n~~~---~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  337 (603)
                      +...   +   .++...+...++|+.|++++|...        +.+|..++++++|+.|++++|...+.+|... .+++|
T Consensus       757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l--------~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL  827 (1153)
T PLN03210        757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL--------VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL  827 (1153)
T ss_pred             cchhhccccccccchhhhhccccchheeCCCCCCc--------cccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccccc
Confidence            4321   0   122222333568899888877532        2568888899999999999876544666554 68899


Q ss_pred             CEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCc
Q 036984          338 RLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIP  417 (603)
Q Consensus       338 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  417 (603)
                      +.|++++|.....+|.                                            .+++|+.|+|++|.++ .+|
T Consensus       828 ~~L~Ls~c~~L~~~p~--------------------------------------------~~~nL~~L~Ls~n~i~-~iP  862 (1153)
T PLN03210        828 ESLDLSGCSRLRTFPD--------------------------------------------ISTNISDLNLSRTGIE-EVP  862 (1153)
T ss_pred             CEEECCCCCccccccc--------------------------------------------cccccCEeECCCCCCc-cCh
Confidence            9999999865433331                                            1357889999999998 678


Q ss_pred             hhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCc
Q 036984          418 TQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNL  459 (603)
Q Consensus       418 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  459 (603)
                      ..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       863 ~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        863 WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            889999999999999854444677778889999999999985

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=7e-24  Score=198.80  Aligned_cols=312  Identities=21%  Similarity=0.179  Sum_probs=197.7

Q ss_pred             EEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEccc-Cc
Q 036984           62 ELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY-NQ  140 (603)
Q Consensus        62 ~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~  140 (603)
                      ..+.++-.++.+|...  .+.-..++|..|+|+.+.+.+|..+++|+.|||++|+|+.+.|++|.++++|..|-+.+ |+
T Consensus        50 ~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             eEEccCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            4456666677776655  56778889999999998888999999999999999999999999999999888887777 88


Q ss_pred             CCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcC
Q 036984          141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFP  220 (603)
Q Consensus       141 i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  220 (603)
                      |+ .+|.++|.++.+++-|.+.-|++.+..                                                 .
T Consensus       128 I~-~l~k~~F~gL~slqrLllNan~i~Cir-------------------------------------------------~  157 (498)
T KOG4237|consen  128 IT-DLPKGAFGGLSSLQRLLLNANHINCIR-------------------------------------------------Q  157 (498)
T ss_pred             hh-hhhhhHhhhHHHHHHHhcChhhhcchh-------------------------------------------------H
Confidence            88 688888888888888877776654111                                                 1


Q ss_pred             hhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCc
Q 036984          221 KFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQ  300 (603)
Q Consensus       221 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~  300 (603)
                      ..                           +..++++..|.+..|.+. .++...+..+.+++.+++..|.+...-     
T Consensus       158 ~a---------------------------l~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdC-----  204 (498)
T KOG4237|consen  158 DA---------------------------LRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDC-----  204 (498)
T ss_pred             HH---------------------------HHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccccc-----
Confidence            11                           344566677777777776 777777777888888888877653211     


Q ss_pred             ccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCe
Q 036984          301 GSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPAL  380 (603)
Q Consensus       301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (603)
                              +++.+.....       ..+..+++.....-..+.+.++...-+.-+..                       
T Consensus       205 --------nL~wla~~~a-------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c-----------------------  246 (498)
T KOG4237|consen  205 --------NLPWLADDLA-------MNPIETSGARCVSPYRLYYKRINQEDARKFLC-----------------------  246 (498)
T ss_pred             --------ccchhhhHHh-------hchhhcccceecchHHHHHHHhcccchhhhhh-----------------------
Confidence                    1222221111       12222333333333334444443111111000                       


Q ss_pred             eEEecCCCCCCcchhhhhcccce-EEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCc
Q 036984          381 SYFSPNGSPMGKEETVQILTSMS-GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNL  459 (603)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  459 (603)
                                       ...++. .+.-.++.....+..+|..+++|+.|+|++|+|+++-+.+|.+...+++|.|..|+
T Consensus       247 -----------------~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~  309 (498)
T KOG4237|consen  247 -----------------SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK  309 (498)
T ss_pred             -----------------hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence                             001111 11112222222223456777777777777777776666777777777777777777


Q ss_pred             CcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCC
Q 036984          460 LHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPL  513 (603)
Q Consensus       460 l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~  513 (603)
                      |...-. .|..+..|+.|+|.+|++++..|..|..+..+..+.+-+|||.|.|.+
T Consensus       310 l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  310 LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL  364 (498)
T ss_pred             HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence            763333 566677777777777777777777777777777777777777776544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=6.6e-21  Score=203.10  Aligned_cols=74  Identities=35%  Similarity=0.402  Sum_probs=43.7

Q ss_pred             CCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEc
Q 036984           82 SLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELIL  161 (603)
Q Consensus        82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l  161 (603)
                      .-..|+++++.++. +|..+.  ++|+.|++++|+++. +|.   .+++|++|++++|+++ .+|.    ..++|++|++
T Consensus       202 ~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----cccccceeec
Confidence            35566777776664 455443  356777777776663 343   2356777777777666 3443    1356666666


Q ss_pred             cCceee
Q 036984          162 SNNHFQ  167 (603)
Q Consensus       162 ~~n~~~  167 (603)
                      ++|.+.
T Consensus       270 s~N~L~  275 (788)
T PRK15387        270 FSNPLT  275 (788)
T ss_pred             cCCchh
Confidence            666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1.6e-20  Score=200.09  Aligned_cols=95  Identities=22%  Similarity=0.249  Sum_probs=62.8

Q ss_pred             CCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcc
Q 036984           58 VHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVS  137 (603)
Q Consensus        58 ~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  137 (603)
                      ..-..|+++++.++.+|+..  .++|+.|++++|+++. +|.   ..++|++|++++|+++. +|..   .++|+.|+++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l--~~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls  270 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF  270 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcch--hcCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence            44567778877777766644  3467778888887776 443   24678888888888774 4432   3577788888


Q ss_pred             cCcCCccCCcccccCCCCCcEEEccCceee
Q 036984          138 YNQLTESISSSPLMLLTSIEELILSNNHFQ  167 (603)
Q Consensus       138 ~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~  167 (603)
                      +|.+. .+|. .   ..+|+.|++++|+++
T Consensus       271 ~N~L~-~Lp~-l---p~~L~~L~Ls~N~Lt  295 (788)
T PRK15387        271 SNPLT-HLPA-L---PSGLCKLWIFGNQLT  295 (788)
T ss_pred             CCchh-hhhh-c---hhhcCEEECcCCccc
Confidence            88776 3444 1   245667777777654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=2.7e-18  Score=184.57  Aligned_cols=75  Identities=25%  Similarity=0.380  Sum_probs=34.0

Q ss_pred             CCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccC
Q 036984           60 LQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN  139 (603)
Q Consensus        60 L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  139 (603)
                      ...|+++++.++.+|...  .++|+.|++++|+++. +|..+.  .+|++|++++|+++ .+|..+.  ++|+.|++++|
T Consensus       180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        180 KTELRLKILGLTTIPACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCC
Confidence            445555555555444322  2345555555555554 233222  24555555555554 2333322  24555555555


Q ss_pred             cCC
Q 036984          140 QLT  142 (603)
Q Consensus       140 ~i~  142 (603)
                      .+.
T Consensus       252 ~L~  254 (754)
T PRK15370        252 RIT  254 (754)
T ss_pred             ccC
Confidence            544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=4.1e-18  Score=183.19  Aligned_cols=246  Identities=25%  Similarity=0.411  Sum_probs=131.9

Q ss_pred             CCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceee
Q 036984          106 LLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFN  185 (603)
Q Consensus       106 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~  185 (603)
                      +...|++++++++ .+|..+.  +.|+.|++++|.++ .+|...   ..+|++|++++|.++.. +.             
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l---~~nL~~L~Ls~N~LtsL-P~-------------  237 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENL---QGNIKTLYANSNQLTSI-PA-------------  237 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhh---ccCCCEEECCCCccccC-Ch-------------
Confidence            4555666666655 3444332  35666666666665 344421   13566666666554310 00             


Q ss_pred             ccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcc
Q 036984          186 GEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNF  265 (603)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~  265 (603)
                                  .+  ..+|+.|++++|.+. .+|..+.  ++|+.|++++|++. .+|..+     .++|+.|++++|.
T Consensus       238 ------------~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l-----~~sL~~L~Ls~N~  294 (754)
T PRK15370        238 ------------TL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL-----PEELRYLSVYDNS  294 (754)
T ss_pred             ------------hh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc-----CCCCcEEECCCCc
Confidence                        00  014455555555544 2333332  35677777777665 345431     2467777777777


Q ss_pred             ccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCC
Q 036984          266 FQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN  345 (603)
Q Consensus       266 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  345 (603)
                      ++ .+|..+.   ++|+.|++++|.+..+         |..+  .++|+.|++++|.++. +|..+.  ++|+.|++++|
T Consensus       295 Lt-~LP~~lp---~sL~~L~Ls~N~Lt~L---------P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N  356 (754)
T PRK15370        295 IR-TLPAHLP---SGITHLNVQSNSLTAL---------PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKN  356 (754)
T ss_pred             cc-cCcccch---hhHHHHHhcCCccccC---------Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCC
Confidence            76 4554332   3566666666655432         2111  2466777777777664 443332  56777777777


Q ss_pred             cCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCc
Q 036984          346 NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTR  425 (603)
Q Consensus       346 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  425 (603)
                      +++ .+|..                                           .+++|+.|++++|.++ .+|..+.  ..
T Consensus       357 ~L~-~LP~~-------------------------------------------lp~~L~~LdLs~N~Lt-~LP~~l~--~s  389 (754)
T PRK15370        357 QIT-VLPET-------------------------------------------LPPTITTLDVSRNALT-NLPENLP--AA  389 (754)
T ss_pred             CCC-cCChh-------------------------------------------hcCCcCEEECCCCcCC-CCCHhHH--HH
Confidence            665 23311                                           1245677777777776 3444443  35


Q ss_pred             CCEEecccccccccCCcCC----cCCCCCCEEeCCCCcCc
Q 036984          426 IRALNLSHNNLTGTIPITF----SNLKQIESLDLSYNLLH  461 (603)
Q Consensus       426 L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~Ls~N~l~  461 (603)
                      |+.|++++|+++ .+|..+    ..++.+..|++.+|+++
T Consensus       390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            677777777776 444433    33456677777777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=8.5e-19  Score=175.39  Aligned_cols=60  Identities=20%  Similarity=0.322  Sum_probs=33.2

Q ss_pred             ccceEEECcCCCCcc----cCchhccCcCcCCEEeccccccccc----CCcCCcCC-CCCCEEeCCCCc
Q 036984          400 TSMSGIDLSCNKLTG----EIPTQIGYLTRIRALNLSHNNLTGT----IPITFSNL-KQIESLDLSYNL  459 (603)
Q Consensus       400 ~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~Ls~N~  459 (603)
                      +.|+.|++++|.+++    .+...+..+++|+++++++|.++..    ....+... +.|++||+.+|+
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            456666666666642    1223444556666777777766643    22333333 567777777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=1.7e-18  Score=173.29  Aligned_cols=287  Identities=22%  Similarity=0.242  Sum_probs=159.5

Q ss_pred             eecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCC--CCccccCCCCCCCEEEccCCcCCCCc------cCccc-
Q 036984            9 HLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNT--ILDQGFCQLVHLQELYIRDNDLRDSL------LGAWQ-   79 (603)
Q Consensus         9 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~------~~~~~-   79 (603)
                      .|+|+++.+. ...+...+.. ++.|+.|+++++.++...  ..+..+...+++++++++++.+...+      +..+. 
T Consensus         2 ~l~L~~~~l~-~~~~~~~~~~-l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~   79 (319)
T cd00116           2 QLSLKGELLK-TERATELLPK-LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK   79 (319)
T ss_pred             ccccccCccc-ccchHHHHHH-HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence            4566665554 2333333323 566888888888775421  12334566777888888887765311      12233 


Q ss_pred             CCCCCEEEccCCCCCcCCchhhcCCCC---CcEEeccCCCCcc----CcCccCCCC-CCCCEEEcccCcCCcc----CCc
Q 036984           80 TTSLQELNVASNKLTRNFPLGLCELVL---LRELYIDNNDLSG----SLPLCLTNL-TSLQVLDVSYNQLTES----ISS  147 (603)
Q Consensus        80 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~n~i~~----~~~~~~~~l-~~L~~L~L~~n~i~~~----~~~  147 (603)
                      +++|++|++++|.+....+..+..+.+   |++|++++|++++    .+...+..+ ++|+.|++++|.+++.    ++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            567777777777766544554544444   7777777776652    122234445 6666666666666521    111


Q ss_pred             ccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCC
Q 036984          148 SPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQH  227 (603)
Q Consensus       148 ~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  227 (603)
                       .+..+++|++|++++|.+.....                                             ..++..+..++
T Consensus       160 -~~~~~~~L~~L~l~~n~l~~~~~---------------------------------------------~~l~~~l~~~~  193 (319)
T cd00116         160 -ALRANRDLKELNLANNGIGDAGI---------------------------------------------RALAEGLKANC  193 (319)
T ss_pred             -HHHhCCCcCEEECcCCCCchHHH---------------------------------------------HHHHHHHHhCC
Confidence             23444555666655554431000                                             01122334445


Q ss_pred             CCCEEEcCCCcccCCCCCCC-ccccccCCccEEEccCccccccCChhhhhc----CCCCcEEecCCCCcccccCCcCccc
Q 036984          228 DLKNADLSHLNLSGEFPNWL-MPIHCLQKLATLDVSNNFFQGHIPVEIGTY----LPGLMHLNLSRNAFNDLSYNRLQGS  302 (603)
Q Consensus       228 ~L~~L~L~~n~i~~~~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~----l~~L~~L~L~~n~l~~l~~~~~~~~  302 (603)
                      +|+.|++++|.+.+.....+ ..+..+++|++|++++|.+.+.....+...    .+.|+.|++++|.+.+.+..    .
T Consensus       194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~----~  269 (319)
T cd00116         194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK----D  269 (319)
T ss_pred             CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH----H
Confidence            67777777776653221110 113456778888888887764222222222    36788888888776533221    2


Q ss_pred             CCccccCCCCCCEEeccCCcCccc----CCccccCC-CCCCEEecCCCcC
Q 036984          303 IPNWIDRLPQISYLLLANNYIEGE----IPAQLCQL-KEVRLIDLSHNNL  347 (603)
Q Consensus       303 ~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~Ls~n~l  347 (603)
                      +...+..+++|+++++++|.++..    ....+... +.|+.+++.+|++
T Consensus       270 l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         270 LAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            223344457888888888888754    33344445 6788888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.1e-18  Score=143.85  Aligned_cols=185  Identities=25%  Similarity=0.408  Sum_probs=144.9

Q ss_pred             ccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCc
Q 036984          250 IHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPA  329 (603)
Q Consensus       250 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  329 (603)
                      +..+..++.|.+|+|+++ .+|+.+.. +.+|+.|++++|++.         .+|..++.+++|+.|++.-|++. +.|.
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie---------~lp~~issl~klr~lnvgmnrl~-~lpr   96 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE---------ELPTSISSLPKLRILNVGMNRLN-ILPR   96 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh---------hcChhhhhchhhhheecchhhhh-cCcc
Confidence            345677888899999998 88888887 789999999888886         44677888999999999999987 7889


Q ss_pred             cccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcC
Q 036984          330 QLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSC  409 (603)
Q Consensus       330 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  409 (603)
                      .|+.++.|+.||+++|++..                                        ....+.|-.++.|+.|+|++
T Consensus        97 gfgs~p~levldltynnl~e----------------------------------------~~lpgnff~m~tlralyl~d  136 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNE----------------------------------------NSLPGNFFYMTTLRALYLGD  136 (264)
T ss_pred             ccCCCchhhhhhcccccccc----------------------------------------ccCCcchhHHHHHHHHHhcC
Confidence            99999999999999999863                                        11223344577888899999


Q ss_pred             CCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCC---CCCCceecccCccccc
Q 036984          410 NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVL---TTLAVFRVAYNNLSGK  486 (603)
Q Consensus       410 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l---~~L~~L~l~~N~l~~~  486 (603)
                      |.+. .+|..++.+++|+.|.+.+|.+. .+|..++.+..|++|++.+|+++-.+|.++.+   .+=+.+.+.+|+...+
T Consensus       137 ndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~p  214 (264)
T KOG0617|consen  137 NDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNP  214 (264)
T ss_pred             CCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence            9998 77778899999999999999988 78888999999999999999998555555443   2334455555555544


Q ss_pred             CC
Q 036984          487 IP  488 (603)
Q Consensus       487 ~p  488 (603)
                      |.
T Consensus       215 Ia  216 (264)
T KOG0617|consen  215 IA  216 (264)
T ss_pred             HH
Confidence            43

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=6.8e-17  Score=134.84  Aligned_cols=111  Identities=26%  Similarity=0.444  Sum_probs=80.5

Q ss_pred             cCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCE
Q 036984           54 FCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQV  133 (603)
Q Consensus        54 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  133 (603)
                      +-++.+.+.|.||+|.++.++|.+-.+.+|+.|++++|+++. .|..++.++.|+.|++.-|++. +.|..|+.++.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            345566777778888888777777667788888888888776 6677778888888888877776 67778888888888


Q ss_pred             EEcccCcCCccCCcccccCCCCCcEEEccCcee
Q 036984          134 LDVSYNQLTESISSSPLMLLTSIEELILSNNHF  166 (603)
Q Consensus       134 L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~  166 (603)
                      |||..|.+.+..-++.|..+..|+.|+++.|.+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndf  139 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF  139 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence            888877776543333566666666666666654

>PLN03150 hypothetical protein; Provisional

Probab=99.56  E-value=1.1e-14  Score=156.52  Aligned_cols=118  Identities=33%  Similarity=0.560  Sum_probs=107.6

Q ss_pred             cceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecc
Q 036984          401 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVA  479 (603)
Q Consensus       401 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~  479 (603)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.||+++|++++.+| .+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47899999999999999999999999999999999999999999999999999999999999999 78999999999999


Q ss_pred             cCcccccCCCccccc-CCCCcccccCCcCCCCCCCCCCCC
Q 036984          480 YNNLSGKIPDRVAQF-STFEEDSYEGNPFLYGQPLSKSCD  518 (603)
Q Consensus       480 ~N~l~~~~p~~~~~l-~~l~~~~l~gn~~~c~~~~~~~C~  518 (603)
                      +|++++.+|..+... ..+..+++.+|+.+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999887664 456778999999999877655663

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=1.9e-12  Score=124.30  Aligned_cols=213  Identities=23%  Similarity=0.317  Sum_probs=144.9

Q ss_pred             ccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCC-hhhhhcCCCCcEEecCCCCcccccCCcCccc
Q 036984          224 YHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIP-VEIGTYLPGLMHLNLSRNAFNDLSYNRLQGS  302 (603)
Q Consensus       224 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~  302 (603)
                      .++.+|+++.|.++.+......  .....+++++.|||+.|-+..-.+ ..+.+.+|+|+.|+++.|.+.....+..++ 
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~-  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL-  194 (505)
T ss_pred             hhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh-
Confidence            3455667777776655322111  114567888888888887653222 234555888999998888876555444443 


Q ss_pred             CCccccCCCCCCEEeccCCcCccc-CCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCee
Q 036984          303 IPNWIDRLPQISYLLLANNYIEGE-IPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALS  381 (603)
Q Consensus       303 ~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (603)
                            .++.|+.|.+++|.++.. +......+++|+.|++..|...                                 
T Consensus       195 ------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~---------------------------------  235 (505)
T KOG3207|consen  195 ------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII---------------------------------  235 (505)
T ss_pred             ------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc---------------------------------
Confidence                  357888999999888632 3344567889999999988522                                 


Q ss_pred             EEecCCCCCCcchhhhhcccceEEECcCCCCcccCc-hhccCcCcCCEEeccccccccc-CCcC-----CcCCCCCCEEe
Q 036984          382 YFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIP-TQIGYLTRIRALNLSHNNLTGT-IPIT-----FSNLKQIESLD  454 (603)
Q Consensus       382 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~-~~~~-----~~~l~~L~~L~  454 (603)
                              .........+..|++|||++|++.+... ...+.++.|+.|+++.+.+..+ .|+.     ....++|+.|+
T Consensus       236 --------~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~  307 (505)
T KOG3207|consen  236 --------LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLN  307 (505)
T ss_pred             --------ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeee
Confidence                    1122233456788999999998764431 3467788999999999998854 2332     34568899999


Q ss_pred             CCCCcCcccCC--CccCCCCCCceecccCccccc
Q 036984          455 LSYNLLHGKIP--QLIVLTTLAVFRVAYNNLSGK  486 (603)
Q Consensus       455 Ls~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~  486 (603)
                      ++.|+|.....  .+..+++|+.|.+..|.+..+
T Consensus       308 i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  308 ISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             cccCccccccccchhhccchhhhhhccccccccc
Confidence            99999974322  677788999999999988754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=4.8e-13  Score=132.28  Aligned_cols=171  Identities=30%  Similarity=0.533  Sum_probs=109.4

Q ss_pred             CccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCC
Q 036984          255 KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQL  334 (603)
Q Consensus       255 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  334 (603)
                      --...|++.|++. .+|..+.. +-.|+.+.+..|.+.         .+|..+.++..|++++++.|+++ ..|..++.+
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r---------~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l  143 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR---------TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL  143 (722)
T ss_pred             chhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce---------ecchhhhhhhHHHHhhhccchhh-cCChhhhcC
Confidence            3455677777776 66665544 446666666666554         45666667777777777777776 556666665


Q ss_pred             CCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcc
Q 036984          335 KEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG  414 (603)
Q Consensus       335 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  414 (603)
                      + |+.|-+++|+++ .+|..++                                         ....|..||.+.|++. 
T Consensus       144 p-Lkvli~sNNkl~-~lp~~ig-----------------------------------------~~~tl~~ld~s~nei~-  179 (722)
T KOG0532|consen  144 P-LKVLIVSNNKLT-SLPEEIG-----------------------------------------LLPTLAHLDVSKNEIQ-  179 (722)
T ss_pred             c-ceeEEEecCccc-cCCcccc-----------------------------------------cchhHHHhhhhhhhhh-
Confidence            5 777777777775 3332221                                         2456666777777776 


Q ss_pred             cCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCccc
Q 036984          415 EIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLS  484 (603)
Q Consensus       415 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~  484 (603)
                      .+|..+.++.+|+.|++..|++. .+|..+..+ .|..||+|+|+++ .+| .|..++.|++|-|.+|+++
T Consensus       180 slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  180 SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            55566677777777777777776 445555533 3666777777777 555 6777777777777777766

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.20  E-value=2.6e-12  Score=117.34  Aligned_cols=106  Identities=21%  Similarity=0.287  Sum_probs=65.2

Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceec
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRV  478 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l  478 (603)
                      .+.++.|++|+|.+. .+. .++.+++|.+||||+|.++ .+..+-.++.+++.|.++.|.|. ...++..+-+|..||+
T Consensus       306 ~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl  381 (490)
T KOG1259|consen  306 APKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDL  381 (490)
T ss_pred             ccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhhhhHhhhhheeccc
Confidence            456666677776666 322 2666667777777777666 33344445566667777777665 4445566666777777


Q ss_pred             ccCcccccC-CCcccccCCCCcccccCCcCC
Q 036984          479 AYNNLSGKI-PDRVAQFSTFEEDSYEGNPFL  508 (603)
Q Consensus       479 ~~N~l~~~~-p~~~~~l~~l~~~~l~gn~~~  508 (603)
                      ++|++.... -..++.+++++.+.+.+||.-
T Consensus       382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             cccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            777665421 134566777777777777653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=1.8e-11  Score=107.58  Aligned_cols=122  Identities=25%  Similarity=0.331  Sum_probs=35.1

Q ss_pred             CCCCCEEeccCCcCcccCCcccc-CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCC
Q 036984          310 LPQISYLLLANNYIEGEIPAQLC-QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGS  388 (603)
Q Consensus       310 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (603)
                      ..++++|+|++|.|+.+  +.++ .+.+|+.|++++|.++.                                       
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~---------------------------------------   56 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK---------------------------------------   56 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----------------------------------------
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc---------------------------------------
Confidence            34566667776666643  1233 45666777777776651                                       


Q ss_pred             CCCcchhhhhcccceEEECcCCCCcccCchhc-cCcCcCCEEecccccccccCC-cCCcCCCCCCEEeCCCCcCcccCC-
Q 036984          389 PMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIP-ITFSNLKQIESLDLSYNLLHGKIP-  465 (603)
Q Consensus       389 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-  465 (603)
                          ...+..++.|++|++++|.|+. +...+ ..+++|++|++++|+|..... ..+..+++|+.|++.+|+++.... 
T Consensus        57 ----l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y  131 (175)
T PF14580_consen   57 ----LEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY  131 (175)
T ss_dssp             -----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH
T ss_pred             ----ccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH
Confidence                1123335566666666666663 32233 346666666666666653211 234556666666666666663322 


Q ss_pred             ---CccCCCCCCcee
Q 036984          466 ---QLIVLTTLAVFR  477 (603)
Q Consensus       466 ---~~~~l~~L~~L~  477 (603)
                         .+..+|+|+.||
T Consensus       132 R~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen  132 RLFVIYKLPSLKVLD  146 (175)
T ss_dssp             HHHHHHH-TT-SEET
T ss_pred             HHHHHHHcChhheeC
Confidence               233455555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=3.6e-11  Score=123.75  Aligned_cols=178  Identities=34%  Similarity=0.543  Sum_probs=86.9

Q ss_pred             CCccEEEccCccccccCChhhhhcCC-CCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCcccc
Q 036984          254 QKLATLDVSNNFFQGHIPVEIGTYLP-GLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLC  332 (603)
Q Consensus       254 ~~L~~L~Ls~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  332 (603)
                      +.++.+++.+|.++ .++..... .+ +|+.|++++|.+.++         |..++.++.|+.|++++|+++ .++....
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~~l---------~~~~~~l~~L~~L~l~~N~l~-~l~~~~~  183 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIESL---------PSPLRNLPNLKNLDLSFNDLS-DLPKLLS  183 (394)
T ss_pred             cceeEEecCCcccc-cCcccccc-chhhcccccccccchhhh---------hhhhhccccccccccCCchhh-hhhhhhh
Confidence            44555555555555 44443332 32 555555555555432         233444555555555555555 2332333


Q ss_pred             CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCC
Q 036984          333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL  412 (603)
Q Consensus       333 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  412 (603)
                      ..+.|+.|++++|++. .+|...                                         ..+..|+++.+++|.+
T Consensus       184 ~~~~L~~L~ls~N~i~-~l~~~~-----------------------------------------~~~~~L~~l~~~~N~~  221 (394)
T COG4886         184 NLSNLNNLDLSGNKIS-DLPPEI-----------------------------------------ELLSALEELDLSNNSI  221 (394)
T ss_pred             hhhhhhheeccCCccc-cCchhh-----------------------------------------hhhhhhhhhhhcCCcc
Confidence            4555566666666554 222110                                         1123355555555543


Q ss_pred             cccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCC
Q 036984          413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIP  488 (603)
Q Consensus       413 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p  488 (603)
                      . ..+..+..+.++..+.+++|++. ..+..+..+++++.|++++|.++ .++.+..+.+++.|++++|.++...|
T Consensus       222 ~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         222 I-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             e-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-ccccccccCccCEEeccCccccccch
Confidence            3 33344555555555555555555 22444455555555555555555 33335555555555555555554444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.16  E-value=1e-11  Score=113.42  Aligned_cols=131  Identities=25%  Similarity=0.285  Sum_probs=106.9

Q ss_pred             CCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCC
Q 036984          310 LPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSP  389 (603)
Q Consensus       310 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (603)
                      ...|+++||++|.|+ .+.++..-.+.++.|++|+|.+..                                        
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~----------------------------------------  321 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT----------------------------------------  321 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceee----------------------------------------
Confidence            467999999999998 566777888999999999999862                                        


Q ss_pred             CCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC--Cc
Q 036984          390 MGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP--QL  467 (603)
Q Consensus       390 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~  467 (603)
                         ......+++|+.||||+|.++ .....-..+-+++.|.|+.|.|...  +.+.++-+|..||+++|+|.....  .+
T Consensus       322 ---v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~I  395 (490)
T KOG1259|consen  322 ---VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHI  395 (490)
T ss_pred             ---ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhccc
Confidence               122556889999999999998 4433345677899999999999743  457788899999999999985444  78


Q ss_pred             cCCCCCCceecccCcccccC
Q 036984          468 IVLTTLAVFRVAYNNLSGKI  487 (603)
Q Consensus       468 ~~l~~L~~L~l~~N~l~~~~  487 (603)
                      .++|.|+.+.|.+|++.+..
T Consensus       396 G~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  396 GNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             ccccHHHHHhhcCCCccccc
Confidence            89999999999999999543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=7.3e-12  Score=120.37  Aligned_cols=219  Identities=20%  Similarity=0.164  Sum_probs=115.8

Q ss_pred             CCCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc--C
Q 036984            3 EFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ--T   80 (603)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~   80 (603)
                      ++++||.+.|+++.......- .+ ...|++++.||||+|-+........-...+|+|+.|+++.|.+.........  +
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~-~~-~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIE-EY-SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCccccccchh-hh-hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            355666666666554433221 22 2336666777777666654333333345666666777766665433332222  5


Q ss_pred             CCCCEEEccCCCCCcC-CchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEE
Q 036984           81 TSLQELNVASNKLTRN-FPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEEL  159 (603)
Q Consensus        81 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L  159 (603)
                      ++|+.|.++.|.++.. +-.....+|+|+.|+|..|....+......-+..|+.|+|++|.+...-.....+.++.|..|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            6666666666666521 112234556666666666632223333344455666666666665532111134555666666


Q ss_pred             EccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCC-CcChhhccCCCCCEEEcCCCc
Q 036984          160 ILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDG-TFPKFLYHQHDLKNADLSHLN  238 (603)
Q Consensus       160 ~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~  238 (603)
                      +++.+.+...-.. .                  ..........++|+.|++..|.+.. .....+..+++|+.|.+..|.
T Consensus       277 nls~tgi~si~~~-d------------------~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  277 NLSSTGIASIAEP-D------------------VESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             hccccCcchhcCC-C------------------ccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            6666655411100 0                  0000111234488889998888743 233456667788888888887


Q ss_pred             ccCC
Q 036984          239 LSGE  242 (603)
Q Consensus       239 i~~~  242 (603)
                      ++..
T Consensus       338 ln~e  341 (505)
T KOG3207|consen  338 LNKE  341 (505)
T ss_pred             cccc
Confidence            7643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=3.9e-11  Score=105.51  Aligned_cols=111  Identities=29%  Similarity=0.331  Sum_probs=27.4

Q ss_pred             cCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccC-CCCCCCC
Q 036984           54 FCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCL-TNLTSLQ  132 (603)
Q Consensus        54 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~  132 (603)
                      +.+..++++|+|++|.|+.+..-...+.+|++|++++|.++.+  +.+..+++|++|++++|.|+.. ...+ ..+++|+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~   91 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence            3344455555666555555432211245556666666655542  2355556666666666666532 2222 2455666


Q ss_pred             EEEcccCcCCccCCcccccCCCCCcEEEccCceee
Q 036984          133 VLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ  167 (603)
Q Consensus       133 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~  167 (603)
                      +|++++|+|.+.-.-..+..+++|++|++.+|++.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            66666665543222224455566666666666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.11  E-value=4.1e-11  Score=131.65  Aligned_cols=151  Identities=26%  Similarity=0.328  Sum_probs=117.9

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCc--CCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCC
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDND--LRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLL  107 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (603)
                      ....++..+-+|.+...    ..-..+++|++|-+..|.  +..+..++|. ++.|++|||++|.-.+.+|..++.+.+|
T Consensus       522 ~~~~rr~s~~~~~~~~~----~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHI----AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             hhheeEEEEeccchhhc----cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            35678888888877532    123356689999999996  7888888888 9999999999987666799999999999


Q ss_pred             cEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceee-eecCccccCCCCCCceeec
Q 036984          108 RELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLKAFNG  186 (603)
Q Consensus       108 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~l~~L~~L~~l~~  186 (603)
                      |+|+++++.++ .+|..++++.+|.+|++..+.....++. ....+.+|++|.+...... .......+.+|+.|+.+..
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            99999999998 7999999999999999999876645544 6777999999999876522 1223344556666665554


Q ss_pred             c
Q 036984          187 E  187 (603)
Q Consensus       187 ~  187 (603)
                      .
T Consensus       676 ~  676 (889)
T KOG4658|consen  676 T  676 (889)
T ss_pred             e
Confidence            3

>PLN03150 hypothetical protein; Provisional

Probab=99.09  E-value=2.4e-10  Score=123.12  Aligned_cols=112  Identities=32%  Similarity=0.490  Sum_probs=97.4

Q ss_pred             CCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCccc
Q 036984          336 EVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE  415 (603)
Q Consensus       336 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  415 (603)
                      .++.|+|++|.+.+.+|..+.                                         .+++|+.|+|++|.+.+.
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~-----------------------------------------~L~~L~~L~Ls~N~l~g~  457 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDIS-----------------------------------------KLRHLQSINLSGNSIRGN  457 (623)
T ss_pred             EEEEEECCCCCccccCCHHHh-----------------------------------------CCCCCCEEECCCCcccCc
Confidence            377889999999887775544                                         367999999999999999


Q ss_pred             CchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccC-CCCCCceecccCcccccCC
Q 036984          416 IPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIV-LTTLAVFRVAYNNLSGKIP  488 (603)
Q Consensus       416 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~-l~~L~~L~l~~N~l~~~~p  488 (603)
                      +|..+..+++|+.|+|++|++++.+|+.++++++|+.|++++|++++.+| .+.. ...+..+++.+|...+..|
T Consensus       458 iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        458 IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            99999999999999999999999999999999999999999999999999 5544 3567789999998766544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=2.5e-10  Score=117.57  Aligned_cols=197  Identities=31%  Similarity=0.481  Sum_probs=143.8

Q ss_pred             EEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccC-CccEEEccCccccccCChhhhhcCCCCcEEe
Q 036984          207 SISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQ-KLATLDVSNNFFQGHIPVEIGTYLPGLMHLN  285 (603)
Q Consensus       207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~  285 (603)
                      .++...+.+... ...+...+.++.+++.+|.++...+.    ..... +|+.|++++|.+. .+|..+.. +++|+.|+
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~----~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~  169 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPL----IGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLD  169 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccCccc----cccchhhcccccccccchh-hhhhhhhc-cccccccc
Confidence            455555554222 22344457789999999998854443    33443 8999999999998 67644544 88999999


Q ss_pred             cCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhccccccccc
Q 036984          286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYY  365 (603)
Q Consensus       286 L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  365 (603)
                      +++|++.+++         ...+..+.|+.|++++|++. .+|........|+++.+++|++..                
T Consensus       170 l~~N~l~~l~---------~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~----------------  223 (394)
T COG4886         170 LSFNDLSDLP---------KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE----------------  223 (394)
T ss_pred             cCCchhhhhh---------hhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee----------------
Confidence            9999987654         33335789999999999998 555554566679999999996421                


Q ss_pred             CCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCc
Q 036984          366 DAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFS  445 (603)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  445 (603)
                                                .......+..+..+.+.+|++. ..+..++.+++++.|++++|+++... . +.
T Consensus       224 --------------------------~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~-~-~~  274 (394)
T COG4886         224 --------------------------LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSIS-S-LG  274 (394)
T ss_pred             --------------------------cchhhhhcccccccccCCceee-eccchhccccccceeccccccccccc-c-cc
Confidence                                      1122344667777888888887 44667888889999999999999443 3 88


Q ss_pred             CCCCCCEEeCCCCcCcccCC
Q 036984          446 NLKQIESLDLSYNLLHGKIP  465 (603)
Q Consensus       446 ~l~~L~~L~Ls~N~l~~~~~  465 (603)
                      .+.+++.||+++|.++..+|
T Consensus       275 ~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         275 SLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccCccCEEeccCccccccch
Confidence            89999999999999986666

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.06  E-value=3.1e-12  Score=126.70  Aligned_cols=171  Identities=29%  Similarity=0.480  Sum_probs=145.6

Q ss_pred             CCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCC
Q 036984          289 NAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAV  368 (603)
Q Consensus       289 n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~  368 (603)
                      ..+.|++.|++. .+|..+..+..|+.+.+..|.+. .+|.+++.+..|+++||+.|+++ .+|..++.+          
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l----------  143 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL----------  143 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC----------
Confidence            334556666665 67777777889999999999998 78889999999999999999997 555444432          


Q ss_pred             CCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCC
Q 036984          369 APTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLK  448 (603)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  448 (603)
                                                      -|+.|.+++|+++ .+|..++.+..|..|+.+.|.+. .+|..++++.
T Consensus       144 --------------------------------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~  189 (722)
T KOG0532|consen  144 --------------------------------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT  189 (722)
T ss_pred             --------------------------------cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH
Confidence                                            3788999999999 88888999999999999999999 7888899999


Q ss_pred             CCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCC
Q 036984          449 QIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFL  508 (603)
Q Consensus       449 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~  508 (603)
                      +|+.|.++.|++...++.+. .-.|..||+++|+++ .+|-.|..+..|+.+.+..||+.
T Consensus       190 slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  190 SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            99999999999995555666 456899999999999 79988999999999999999974

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.00  E-value=1.9e-11  Score=114.44  Aligned_cols=138  Identities=19%  Similarity=0.215  Sum_probs=82.2

Q ss_pred             CCCCCEEeccCCcCcccC----CccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEec
Q 036984          310 LPQISYLLLANNYIEGEI----PAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSP  385 (603)
Q Consensus       310 l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (603)
                      -++|+++...+|++.+..    ...|...+.|+.+.++.|.+...--                                 
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~---------------------------------  202 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV---------------------------------  202 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh---------------------------------
Confidence            356777777777665332    2345556677777777776641100                                 


Q ss_pred             CCCCCCcchhhhhcccceEEECcCCCCcccC----chhccCcCcCCEEecccccccccCCcCC-----cCCCCCCEEeCC
Q 036984          386 NGSPMGKEETVQILTSMSGIDLSCNKLTGEI----PTQIGYLTRIRALNLSHNNLTGTIPITF-----SNLKQIESLDLS  456 (603)
Q Consensus       386 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls  456 (603)
                          ......+..+++|+.|||.+|-++...    ...++.++.|++|++++|.+...-...|     ...++|+.|++.
T Consensus       203 ----~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~  278 (382)
T KOG1909|consen  203 ----TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA  278 (382)
T ss_pred             ----HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence                011234555677777777777766432    3345566777777777777764333222     235677888888


Q ss_pred             CCcCccc----CC-CccCCCCCCceecccCccc
Q 036984          457 YNLLHGK----IP-QLIVLTTLAVFRVAYNNLS  484 (603)
Q Consensus       457 ~N~l~~~----~~-~~~~l~~L~~L~l~~N~l~  484 (603)
                      +|.|+..    +. .....+.|..|+|++|.+.
T Consensus       279 gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  279 GNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            8877632    11 3445777888888888773

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=3.2e-11  Score=112.87  Aligned_cols=164  Identities=18%  Similarity=0.228  Sum_probs=115.1

Q ss_pred             ccCCCCCCEEeccCCcCcccCCcc-------------ccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCc
Q 036984          307 IDRLPQISYLLLANNYIEGEIPAQ-------------LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWD  373 (603)
Q Consensus       307 l~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (603)
                      +.++..|++|+|.+|.+...-...             ...-+.|+.+...+|++-.. +.                    
T Consensus       116 l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~-ga--------------------  174 (382)
T KOG1909|consen  116 LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG-GA--------------------  174 (382)
T ss_pred             HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc-cH--------------------
Confidence            344566666777666654222111             23347899999999998521 11                    


Q ss_pred             CCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCccc----CchhccCcCcCCEEeccccccccc----CCcCCc
Q 036984          374 HASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE----IPTQIGYLTRIRALNLSHNNLTGT----IPITFS  445 (603)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~  445 (603)
                                      ......++..+.|+.+.++.|.|...    ....+..+++|+.|||.+|.++..    +...+.
T Consensus       175 ----------------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~  238 (382)
T KOG1909|consen  175 ----------------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS  238 (382)
T ss_pred             ----------------HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence                            11234566678999999999988633    234678899999999999999853    345577


Q ss_pred             CCCCCCEEeCCCCcCcccCC-----C-ccCCCCCCceecccCccccc----CCCcccccCCCCcccccCCcC
Q 036984          446 NLKQIESLDLSYNLLHGKIP-----Q-LIVLTTLAVFRVAYNNLSGK----IPDRVAQFSTFEEDSYEGNPF  507 (603)
Q Consensus       446 ~l~~L~~L~Ls~N~l~~~~~-----~-~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~l~~~~l~gn~~  507 (603)
                      .+++|++|++++|.+.....     . -...|+|+.+++.+|.++..    +-..+...+.+..+.++||.+
T Consensus       239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            78899999999999985433     1 12378999999999998742    222234468889999999988

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=7.7e-10  Score=79.89  Aligned_cols=60  Identities=45%  Similarity=0.587  Sum_probs=40.5

Q ss_pred             cceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcC
Q 036984          401 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL  460 (603)
Q Consensus       401 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  460 (603)
                      +|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            566677777776655556666677777777777777666666667777777777776654

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.91  E-value=2.5e-10  Score=117.68  Aligned_cols=108  Identities=27%  Similarity=0.261  Sum_probs=56.7

Q ss_pred             hccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCccc
Q 036984          223 LYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGS  302 (603)
Q Consensus       223 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~  302 (603)
                      +..+.+|+.+++..|.+......    +..+++|++|++++|.|+ .+...  ..++.|+.|++++|.+.+++       
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~----l~~~~~L~~L~ls~N~I~-~i~~l--~~l~~L~~L~l~~N~i~~~~-------  156 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENL----LSSLVNLQVLDLSFNKIT-KLEGL--STLTLLKELNLSGNLISDIS-------  156 (414)
T ss_pred             cccccceeeeeccccchhhcccc----hhhhhcchheeccccccc-cccch--hhccchhhheeccCcchhcc-------
Confidence            44555566666666655533321    334566666666666665 22211  11445666666666655443       


Q ss_pred             CCccccCCCCCCEEeccCCcCcccCC-ccccCCCCCCEEecCCCcCc
Q 036984          303 IPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLS  348 (603)
Q Consensus       303 ~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~  348 (603)
                         .+..++.|+.+++++|.+..+.+ . ...+.+++.+++.+|.+.
T Consensus       157 ---~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  157 ---GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             ---CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence               12225566666666666654433 1 345556666666666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=9.7e-10  Score=79.36  Aligned_cols=59  Identities=36%  Similarity=0.494  Sum_probs=26.9

Q ss_pred             CCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc
Q 036984           82 SLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ  140 (603)
Q Consensus        82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~  140 (603)
                      +|++|++++|++..+.+..|.++++|++|++++|.++...+.+|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444444333444444444444444444444444444444444444444443

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.74  E-value=4e-10  Score=114.94  Aligned_cols=113  Identities=27%  Similarity=0.398  Sum_probs=84.6

Q ss_pred             chhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCc-CCcCCCCCCEEeCCCCcCcccCCCccCCC
Q 036984          393 EETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPI-TFSNLKQIESLDLSYNLLHGKIPQLIVLT  471 (603)
Q Consensus       393 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  471 (603)
                      ...++.++.++.|+|++|+++...  .+..++.|++|||++|.+. .+|. ...++. |+.|.+++|.++ ..-++.++.
T Consensus       180 D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL~gie~Lk  254 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TLRGIENLK  254 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hhhhHHhhh
Confidence            345566788889999999988432  6888899999999999988 4443 334444 899999999888 566788889


Q ss_pred             CCCceecccCcccccCC-CcccccCCCCcccccCCcCCCC
Q 036984          472 TLAVFRVAYNNLSGKIP-DRVAQFSTFEEDSYEGNPFLYG  510 (603)
Q Consensus       472 ~L~~L~l~~N~l~~~~p-~~~~~l~~l~~~~l~gn~~~c~  510 (603)
                      +|+.||+++|-+++-.. ..+..+..+..+.+.|||..|.
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            99999999998875221 1134456778889999998883

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.73  E-value=3.5e-10  Score=115.35  Aligned_cols=181  Identities=25%  Similarity=0.304  Sum_probs=120.2

Q ss_pred             ccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCccccc------CCcCcccCCccccCCCCCCEEeccCCcC
Q 036984          250 IHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS------YNRLQGSIPNWIDRLPQISYLLLANNYI  323 (603)
Q Consensus       250 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~------~~~~~~~~~~~l~~l~~L~~L~L~~n~l  323 (603)
                      +..+.+|+.|.+.++.+. .. .++...-..|++|.-. |.+..+.      +..+. .-|.|    -+|...+.++|.+
T Consensus       105 ifpF~sLr~LElrg~~L~-~~-~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~-ns~~W----n~L~~a~fsyN~L  176 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLS-TA-KGLQELRHQLEKLICH-NSLDALRHVFASCGGDIS-NSPVW----NKLATASFSYNRL  176 (1096)
T ss_pred             eccccceeeEEecCcchh-hh-hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccc-cchhh----hhHhhhhcchhhH
Confidence            445678999999998886 32 1222111234444322 1111110      00111 11122    3677888888888


Q ss_pred             cccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccce
Q 036984          324 EGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMS  403 (603)
Q Consensus       324 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  403 (603)
                      . ....++.-++.|+.|||++|+++.                                           ...+.+++.|+
T Consensus       177 ~-~mD~SLqll~ale~LnLshNk~~~-------------------------------------------v~~Lr~l~~Lk  212 (1096)
T KOG1859|consen  177 V-LMDESLQLLPALESLNLSHNKFTK-------------------------------------------VDNLRRLPKLK  212 (1096)
T ss_pred             H-hHHHHHHHHHHhhhhccchhhhhh-------------------------------------------hHHHHhccccc
Confidence            7 566777888889999999998862                                           23567788999


Q ss_pred             EEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC--CccCCCCCCceecccC
Q 036984          404 GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP--QLIVLTTLAVFRVAYN  481 (603)
Q Consensus       404 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~l~~N  481 (603)
                      .|||++|.+....--...++. |..|+|++|.++..  ..+.++.+|+.||+++|-|.+.-.  .++.+..|+.|.|.+|
T Consensus       213 hLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  213 HLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             ccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            999999998833322333444 89999999998843  346788899999999998886444  5677888899999999


Q ss_pred             cccc
Q 036984          482 NLSG  485 (603)
Q Consensus       482 ~l~~  485 (603)
                      ++-+
T Consensus       290 Pl~c  293 (1096)
T KOG1859|consen  290 PLCC  293 (1096)
T ss_pred             cccc
Confidence            8863

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.70  E-value=6.9e-09  Score=114.34  Aligned_cols=107  Identities=26%  Similarity=0.272  Sum_probs=85.7

Q ss_pred             cCCCcEEEccCCc--CCCCCCCccccCCCCCCCEEEccCCc-CCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCC
Q 036984           31 MASLRLLSLSYSR--LNKNTILDQGFCQLVHLQELYIRDND-LRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLL  107 (603)
Q Consensus        31 ~~~L~~L~Ls~n~--i~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (603)
                      ++.|++|-+..|.  +..  .....|..++.|++|||++|. +..+|..+-.+-+|++|+++++.+.. +|..+++++.|
T Consensus       544 ~~~L~tLll~~n~~~l~~--is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L  620 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLE--ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKL  620 (889)
T ss_pred             CCccceEEEeecchhhhh--cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhh
Confidence            5679999998886  332  233448899999999999876 44444444449999999999999986 88999999999


Q ss_pred             cEEeccCCCCccCcCccCCCCCCCCEEEcccCc
Q 036984          108 RELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ  140 (603)
Q Consensus       108 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~  140 (603)
                      .+|++..+.-....|.....+++|++|.+....
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccc
Confidence            999999987655667777789999999997764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=2.2e-09  Score=110.72  Aligned_cols=106  Identities=32%  Similarity=0.317  Sum_probs=53.0

Q ss_pred             CCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEE
Q 036984           56 QLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLD  135 (603)
Q Consensus        56 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  135 (603)
                      .+..++.+.++.|.+..+....-.+++|+.|++.+|++..+ ...+..+++|++|++++|.|+.+  ..+..++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence            34444445555555544222222255555556665555542 22244555566666666655543  2244455555666


Q ss_pred             cccCcCCccCCcccccCCCCCcEEEccCceee
Q 036984          136 VSYNQLTESISSSPLMLLTSIEELILSNNHFQ  167 (603)
Q Consensus       136 L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~  167 (603)
                      +++|.+. .+..  +..++.|+.+++++|++.
T Consensus       147 l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  147 LSGNLIS-DISG--LESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             eccCcch-hccC--CccchhhhcccCCcchhh
Confidence            6666554 2322  444555555555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=4e-08  Score=90.33  Aligned_cols=230  Identities=17%  Similarity=0.159  Sum_probs=115.3

Q ss_pred             CceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCc-ccCCCCCE
Q 036984            7 LEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQE   85 (603)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~~~L~~   85 (603)
                      ++.|.+.++.+....++..+. ..++.++.+||.+|.|+...-......++|.|++|+++.|++....... ....+|++
T Consensus        47 ~ellvln~~~id~~gd~~~~~-~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFG-SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             hhhheecCCCCCcchhHHHHH-HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            335566666665555554433 3467777777777777654322334566777777777777765433322 23566777


Q ss_pred             EEccCCCCCc-CCchhhcCCCCCcEEeccCCCCcc--CcCccCCCC-CCCCEEEcccCcCCc--cCCcccccCCCCCcEE
Q 036984           86 LNVASNKLTR-NFPLGLCELVLLRELYIDNNDLSG--SLPLCLTNL-TSLQVLDVSYNQLTE--SISSSPLMLLTSIEEL  159 (603)
Q Consensus        86 L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l-~~L~~L~L~~n~i~~--~~~~~~~~~l~~L~~L  159 (603)
                      |.|.+..+.- .....+..+|.++.|.++.|.+..  ...++.... +.+++|....|...-  .... .-...+++..+
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~-l~r~Fpnv~sv  204 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK-LSRIFPNVNSV  204 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHh-HHhhcccchhe
Confidence            7777665542 122344566666666666663321  111111111 133333333332110  0000 01123444555


Q ss_pred             EccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCC-CcChhhccCCCCCEEEcCCCc
Q 036984          160 ILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDG-TFPKFLYHQHDLKNADLSHLN  238 (603)
Q Consensus       160 ~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~  238 (603)
                      .+..|+++........                        .+.+.+..|.++.+++.. .....+.++++|..|.++++.
T Consensus       205 ~v~e~PlK~~s~ek~s------------------------e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGS------------------------EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             eeecCcccchhhcccC------------------------CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence            5555554432222222                        233344455666665543 234566778888888888887


Q ss_pred             ccCCCCCC---CccccccCCccEEEcc
Q 036984          239 LSGEFPNW---LMPIHCLQKLATLDVS  262 (603)
Q Consensus       239 i~~~~~~~---~~~~~~l~~L~~L~Ls  262 (603)
                      +.......   ..-++.+++++.|+=+
T Consensus       261 l~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  261 LSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             ccccccCCcceEEEEeeccceEEecCc
Confidence            75433221   1114566777776543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.35  E-value=3.3e-08  Score=80.24  Aligned_cols=59  Identities=24%  Similarity=0.455  Sum_probs=29.4

Q ss_pred             cceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCc
Q 036984          401 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH  461 (603)
Q Consensus       401 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  461 (603)
                      .++.|++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.||..+|.+.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            4444555555555 34444555555555555555554 34444444555555555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1.4e-08  Score=93.22  Aligned_cols=182  Identities=20%  Similarity=0.225  Sum_probs=98.0

Q ss_pred             CCCCEEEccCCCCCc-CCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc-CCccCCcccccCCCCCcE
Q 036984           81 TSLQELNVASNKLTR-NFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ-LTESISSSPLMLLTSIEE  158 (603)
Q Consensus        81 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~  158 (603)
                      ..|++||||+..++. ..-..+..+.+|+.|.|.++++.+.+...+++-.+|+.|+++.+. +++....-.+..++.|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            347777777766653 122345566677777777777766666667777777777777643 332222224556677777


Q ss_pred             EEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCC---CCcChhhccCCCCCEEEcC
Q 036984          159 LILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDD---GTFPKFLYHQHDLKNADLS  235 (603)
Q Consensus       159 L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~L~  235 (603)
                      |+++.|.+..+..-                     .....+  ..+|+.|++++++-.   ..+..-...+++|.+|||+
T Consensus       265 LNlsWc~l~~~~Vt---------------------v~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLS  321 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVT---------------------VAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLS  321 (419)
T ss_pred             cCchHhhccchhhh---------------------HHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccc
Confidence            77777655421100                     000001  115666666665421   1222334566777777777


Q ss_pred             CCcccCCCCCCCccccccCCccEEEccCccccccCChhh--hhcCCCCcEEecCCC
Q 036984          236 HLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEI--GTYLPGLMHLNLSRN  289 (603)
Q Consensus       236 ~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~--~~~l~~L~~L~L~~n  289 (603)
                      .|....  ++.+..+.+++.|++|.++.|..  .+|..+  +...|+|.+|++.++
T Consensus       322 D~v~l~--~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  322 DSVMLK--NDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cccccC--chHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            764321  12233355667777777776653  233221  223567777766554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=1.1e-06  Score=81.07  Aligned_cols=110  Identities=25%  Similarity=0.273  Sum_probs=69.6

Q ss_pred             CCCCCCEEEccCCcCCCCccC-ccc--CCCCCEEEccCCCCCc--CCchhhcCCCCCcEEeccCCCCccCcCccC-CCCC
Q 036984           56 QLVHLQELYIRDNDLRDSLLG-AWQ--TTSLQELNVASNKLTR--NFPLGLCELVLLRELYIDNNDLSGSLPLCL-TNLT  129 (603)
Q Consensus        56 ~l~~L~~L~Ls~n~i~~~~~~-~~~--~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~  129 (603)
                      ..+-+..|.+.++.|..+... .|+  ++.++.+||.+|.++.  .+...+.++|.|+.|+|+.|.+...+ +.+ ..+.
T Consensus        43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~  121 (418)
T KOG2982|consen   43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLK  121 (418)
T ss_pred             cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCccccc
Confidence            334455666666666544322 233  6788888888888764  12234567888888888888876322 222 3456


Q ss_pred             CCCEEEcccCcCCccCCcccccCCCCCcEEEccCcee
Q 036984          130 SLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF  166 (603)
Q Consensus       130 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~  166 (603)
                      +|++|-|.+..+.=......+..+|.+++|+++.|.+
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            8888888877664222233567778888888888744

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.15  E-value=1.2e-07  Score=77.16  Aligned_cols=108  Identities=19%  Similarity=0.295  Sum_probs=78.1

Q ss_pred             hcccceEEECcCCCCcccCchhcc-CcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCce
Q 036984          398 ILTSMSGIDLSCNKLTGEIPTQIG-YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVF  476 (603)
Q Consensus       398 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L  476 (603)
                      ....|+..+|++|.+. ..|..|. ..+.++.|++++|.|. .+|..+..++.|+.|+++.|++...+..+..+.++-.|
T Consensus        51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML  128 (177)
T ss_pred             CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence            3567888999999998 4455554 4458899999999998 67888999999999999999998433367778888889


Q ss_pred             ecccCcccccCCCcccccCCC-CcccccCCcCCC
Q 036984          477 RVAYNNLSGKIPDRVAQFSTF-EEDSYEGNPFLY  509 (603)
Q Consensus       477 ~l~~N~l~~~~p~~~~~l~~l-~~~~l~gn~~~c  509 (603)
                      +..+|.+- ++|-.+ -.++. -...+..+||--
T Consensus       129 ds~~na~~-eid~dl-~~s~~~al~~lgnepl~~  160 (177)
T KOG4579|consen  129 DSPENARA-EIDVDL-FYSSLPALIKLGNEPLGD  160 (177)
T ss_pred             cCCCCccc-cCcHHH-hccccHHHHHhcCCcccc
Confidence            99888877 555432 12222 223455566544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.09  E-value=2.1e-06  Score=56.49  Aligned_cols=36  Identities=39%  Similarity=0.646  Sum_probs=18.9

Q ss_pred             cCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCc
Q 036984          425 RIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH  461 (603)
Q Consensus       425 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  461 (603)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 33334555566666666666555

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.06  E-value=1.5e-06  Score=93.62  Aligned_cols=106  Identities=21%  Similarity=0.285  Sum_probs=43.0

Q ss_pred             CCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCC
Q 036984            6 NLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQ   84 (603)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~   84 (603)
                      +|++|+++|.... ..++.......+|+|+.|.+++-.+.... ......++|+|+.||+|+++++.+  ...+ +++|+
T Consensus       123 nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  123 NLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             hhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            3445555553222 23333333334555555555443332211 112234445555555555554443  1112 44444


Q ss_pred             EEEccCCCCCc-CCchhhcCCCCCcEEeccCC
Q 036984           85 ELNVASNKLTR-NFPLGLCELVLLRELYIDNN  115 (603)
Q Consensus        85 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n  115 (603)
                      +|.+.+=.+.. ..-..+.++++|+.||+|..
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            44444433332 11113334455555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.00  E-value=1.1e-06  Score=80.08  Aligned_cols=109  Identities=17%  Similarity=0.185  Sum_probs=64.7

Q ss_pred             ccceEEECcCCCCcccCc-----hhccCcCcCCEEeccccccccc----CCcCCcCCCCCCEEeCCCCcCcccCC-----
Q 036984          400 TSMSGIDLSCNKLTGEIP-----TQIGYLTRIRALNLSHNNLTGT----IPITFSNLKQIESLDLSYNLLHGKIP-----  465 (603)
Q Consensus       400 ~~L~~L~Ls~n~l~~~~~-----~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~-----  465 (603)
                      ..|+++.+..|.|..+.-     ..+..+.+|+.|+|.+|.++..    +...+..++.|++|.+.+|-++....     
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~  264 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR  264 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence            467777888877753311     2334567788888888877732    23345566778888888887764322     


Q ss_pred             Cc--cCCCCCCceecccCcccccCCCc-----c--cccCCCCcccccCCcCC
Q 036984          466 QL--IVLTTLAVFRVAYNNLSGKIPDR-----V--AQFSTFEEDSYEGNPFL  508 (603)
Q Consensus       466 ~~--~~l~~L~~L~l~~N~l~~~~p~~-----~--~~l~~l~~~~l~gn~~~  508 (603)
                      .+  ...|+|..|...+|...+.+-..     +  ..++.+..+.+.||.+.
T Consensus       265 ~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         265 RFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             HhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            11  12677788888888765432211     0  12344455566677653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=7.4e-08  Score=88.63  Aligned_cols=132  Identities=23%  Similarity=0.213  Sum_probs=67.6

Q ss_pred             CCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCC-CCcC-CchhhcCCCCCc
Q 036984           32 ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNK-LTRN-FPLGLCELVLLR  108 (603)
Q Consensus        32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~  108 (603)
                      ..|++||||+..|+... ....+..|.+|+.|.+.++++.+.....++ ..+|+.|+++.+. ++.- ..-.+.+++.|.
T Consensus       185 sRlq~lDLS~s~it~st-l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVST-LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhheeHHH-HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            34666666666554322 122345666666666666666655444444 5666666666653 2211 112345666677


Q ss_pred             EEeccCCCCccCcCc-cCCC-CCCCCEEEcccCcC--C-ccCCcccccCCCCCcEEEccCce
Q 036984          109 ELYIDNNDLSGSLPL-CLTN-LTSLQVLDVSYNQL--T-ESISSSPLMLLTSIEELILSNNH  165 (603)
Q Consensus       109 ~L~L~~n~i~~~~~~-~~~~-l~~L~~L~L~~n~i--~-~~~~~~~~~~l~~L~~L~l~~n~  165 (603)
                      .|+|+.|.+...... ...+ -++|+.|+++++.-  . ..+.. ....+++|.+||++.|.
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeecccccc
Confidence            777776655422111 1111 13566666666421  1 11111 23456677777777654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.95  E-value=8.9e-06  Score=71.09  Aligned_cols=105  Identities=20%  Similarity=0.203  Sum_probs=79.5

Q ss_pred             hcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC--CccCCCCCCc
Q 036984          398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP--QLIVLTTLAV  475 (603)
Q Consensus       398 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~  475 (603)
                      +......+||++|.+...  ..|+.+++|.+|.+.+|+|+.+.|.--.-++.|..|.+.+|.|.....  .++.+|.|++
T Consensus        40 ~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   40 TLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            345677899999998733  358888999999999999997777655556889999999999874333  7888999999


Q ss_pred             eecccCcccccCC---CcccccCCCCcccccC
Q 036984          476 FRVAYNNLSGKIP---DRVAQFSTFEEDSYEG  504 (603)
Q Consensus       476 L~l~~N~l~~~~p---~~~~~l~~l~~~~l~g  504 (603)
                      |.+-+|+.+..--   -.+..+++++.+++++
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            9999998874211   1234567777777765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.92  E-value=1.5e-05  Score=69.77  Aligned_cols=126  Identities=22%  Similarity=0.164  Sum_probs=74.4

Q ss_pred             CcEEEccCCcCCCCCCCccccC-CCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEe
Q 036984           34 LRLLSLSYSRLNKNTILDQGFC-QLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELY  111 (603)
Q Consensus        34 L~~L~Ls~n~i~~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (603)
                      =+.++|++.++....    .++ .+.+...+||++|.+..+  ..|. ++.|.+|.+++|+|+.+.|.--.-+++|+.|.
T Consensus        21 e~e~~LR~lkip~ie----nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~   94 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIE----NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI   94 (233)
T ss_pred             ccccccccccccchh----hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEE
Confidence            356677776664321    111 234566777777776554  2333 67777777777777776665555566777777


Q ss_pred             ccCCCCccCc-CccCCCCCCCCEEEcccCcCCccCC--cccccCCCCCcEEEccCce
Q 036984          112 IDNNDLSGSL-PLCLTNLTSLQVLDVSYNQLTESIS--SSPLMLLTSIEELILSNNH  165 (603)
Q Consensus       112 L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~~l~~L~~L~l~~n~  165 (603)
                      |.+|.+.... -..+..+++|++|.+-+|.++..--  .-.+..+++|+.||+.+-.
T Consensus        95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            7777664211 1235567777777777776653111  1134566777777766543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=1.5e-05  Score=52.49  Aligned_cols=35  Identities=37%  Similarity=0.595  Sum_probs=12.8

Q ss_pred             CCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCc
Q 036984           83 LQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLS  118 (603)
Q Consensus        83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~  118 (603)
                      |++|++++|+++. +|..++++++|++|++++|+++
T Consensus         3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            3444444444433 2223344444444444444333

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.84  E-value=1.2e-06  Score=79.85  Aligned_cols=226  Identities=17%  Similarity=0.145  Sum_probs=117.4

Q ss_pred             CCCCCEEEccCCCCCcCCc----hhhcCCCCCcEEeccCCCC---cc-------CcCccCCCCCCCCEEEcccCcCCccC
Q 036984           80 TTSLQELNVASNKLTRNFP----LGLCELVLLRELYIDNNDL---SG-------SLPLCLTNLTSLQVLDVSYNQLTESI  145 (603)
Q Consensus        80 ~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~i---~~-------~~~~~~~~l~~L~~L~L~~n~i~~~~  145 (603)
                      +..+..++||+|.|.....    ..+.+-.+|+..++++--.   ..       .+..++.+||+|+..+||.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            5667777777777654332    2344556677777765321   11       12235667889999999998886554


Q ss_pred             Cc---ccccCCCCCcEEEccCceeeeecCcc----ccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCC
Q 036984          146 SS---SPLMLLTSIEELILSNNHFQIPISLE----PLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGT  218 (603)
Q Consensus       146 ~~---~~~~~l~~L~~L~l~~n~~~~~~~~~----~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  218 (603)
                      |.   +.+++-+.|++|.+++|.+. +....    .+..|...               ......+.|+......|++..-
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~n---------------KKaa~kp~Le~vicgrNRleng  172 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYN---------------KKAADKPKLEVVICGRNRLENG  172 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHH---------------hhhccCCCceEEEeccchhccC
Confidence            43   23456678899999888764 22111    11111111               1112233555555555554321


Q ss_pred             cChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCC-----hhhhhcCCCCcEEecCCCCccc
Q 036984          219 FPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIP-----VEIGTYLPGLMHLNLSRNAFND  293 (603)
Q Consensus       219 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-----~~~~~~l~~L~~L~L~~n~l~~  293 (603)
                      ...                       .|...+..-..|+.+.+..|.|....-     ...+ .+.+|+.|++++|.++.
T Consensus       173 s~~-----------------------~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~  228 (388)
T COG5238         173 SKE-----------------------LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             cHH-----------------------HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhh
Confidence            100                       000001111345555555555431100     0112 25566666666666654


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccc------cCCCCCCEEecCCCcCcc
Q 036984          294 LSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQL------CQLKEVRLIDLSHNNLSG  349 (603)
Q Consensus       294 l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~Ls~n~l~~  349 (603)
                      .....+....+.|    +.|+.|.+..|.++.....++      ...++|+.|-..+|.+.+
T Consensus       229 ~gS~~La~al~~W----~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         229 EGSRYLADALCEW----NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             hhHHHHHHHhccc----chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            4333333333443    567888888887765543322      235778888888887754

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.78  E-value=4.9e-07  Score=87.27  Aligned_cols=83  Identities=20%  Similarity=0.073  Sum_probs=38.5

Q ss_pred             CCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCc-CCCCccCccc--CCCCCEEEccCCC-CCcCCch-hhcCCCCC
Q 036984           33 SLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDND-LRDSLLGAWQ--TTSLQELNVASNK-LTRNFPL-GLCELVLL  107 (603)
Q Consensus        33 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~--~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L  107 (603)
                      -|+.|.++++.=.+...+.....++|++++|.+.++. +++.....+.  +++|++|++..|. ++...-. .-.++++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            4556666665433322233334456666666665554 2222222222  5666666666542 2221111 22345556


Q ss_pred             cEEeccCC
Q 036984          108 RELYIDNN  115 (603)
Q Consensus       108 ~~L~L~~n  115 (603)
                      ++|+++.+
T Consensus       219 ~~lNlSwc  226 (483)
T KOG4341|consen  219 KYLNLSWC  226 (483)
T ss_pred             HHhhhccC
Confidence            66666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=0.00015  Score=72.22  Aligned_cols=34  Identities=12%  Similarity=0.251  Sum_probs=21.4

Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEeccccc
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN  435 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~  435 (603)
                      +++|+.|++++|... ..|..++  .+|+.|+++.|.
T Consensus       155 PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        155 SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            457777777777655 3444444  467777777663

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.71  E-value=0.00016  Score=71.99  Aligned_cols=11  Identities=27%  Similarity=0.398  Sum_probs=5.6

Q ss_pred             ccceEEECcCC
Q 036984          400 TSMSGIDLSCN  410 (603)
Q Consensus       400 ~~L~~L~Ls~n  410 (603)
                      .+|+.|+++.+
T Consensus       177 ~SLk~L~ls~n  187 (426)
T PRK15386        177 ESLQSITLHIE  187 (426)
T ss_pred             ccCcEEEeccc
Confidence            35555555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.66  E-value=1.2e-06  Score=84.72  Aligned_cols=87  Identities=18%  Similarity=0.125  Sum_probs=40.2

Q ss_pred             cccEEeccCCCCCC--CcChhhccCCCCCEEEcCCCcccCCC-CCCCc-cccccCCccEEEccCccccccCChhhhhcCC
Q 036984          204 QLTSISLSGYRDDG--TFPKFLYHQHDLKNADLSHLNLSGEF-PNWLM-PIHCLQKLATLDVSNNFFQGHIPVEIGTYLP  279 (603)
Q Consensus       204 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~  279 (603)
                      .|+.+++..+....  .+...-.+++.|+.+.+++|....+. ...+. .-..+..|+.+.++++.....-.......++
T Consensus       347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~  426 (483)
T KOG4341|consen  347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR  426 (483)
T ss_pred             hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence            45555555554321  12222235566666666666432221 00000 0123456777777776543222223333466


Q ss_pred             CCcEEecCCCC
Q 036984          280 GLMHLNLSRNA  290 (603)
Q Consensus       280 ~L~~L~L~~n~  290 (603)
                      +|+.+++-+++
T Consensus       427 ~Leri~l~~~q  437 (483)
T KOG4341|consen  427 NLERIELIDCQ  437 (483)
T ss_pred             ccceeeeechh
Confidence            77776665553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.51  E-value=0.00029  Score=59.65  Aligned_cols=105  Identities=22%  Similarity=0.285  Sum_probs=38.8

Q ss_pred             ccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCC
Q 036984           53 GFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSL  131 (603)
Q Consensus        53 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  131 (603)
                      .|.++.+|+.+.+.. .+..+...+|. +++|+.+.+.++ +..+....|.++++|+.+.+.+ .+......+|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344555555555542 34444445554 445555555443 3333334444544455555543 2222333444445555


Q ss_pred             CEEEcccCcCCccCCcccccCCCCCcEEEccC
Q 036984          132 QVLDVSYNQLTESISSSPLMLLTSIEELILSN  163 (603)
Q Consensus       132 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~  163 (603)
                      +.+++..+ +. .++...|... +++.+.+..
T Consensus        84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             cccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            55555433 22 2333344444 555554443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.49  E-value=0.0003  Score=59.50  Aligned_cols=118  Identities=16%  Similarity=0.244  Sum_probs=69.6

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE  109 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (603)
                      +++|+.+.+.. .+..  +....|.++++|+.+.+.++ +..+...+|. +++++.+.+.+ .+.......|..+++|+.
T Consensus        11 ~~~l~~i~~~~-~~~~--I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   11 CSNLESITFPN-TIKK--IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             -TT--EEEETS-T--E--E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCCCEEEECC-CeeE--eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            67888998874 3442  34567999999999999885 8888888888 77899999976 555555678888999999


Q ss_pred             EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCc
Q 036984          110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIE  157 (603)
Q Consensus       110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~  157 (603)
                      +++..+ +......+|.++ +|+.+.+.. .+. .++...|.++++|+
T Consensus        86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK  129 (129)
T ss_dssp             EEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred             cccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence            999775 665667788887 999999876 444 45666788777764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.49  E-value=7.6e-05  Score=80.72  Aligned_cols=110  Identities=22%  Similarity=0.297  Sum_probs=78.7

Q ss_pred             CCCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCC--CccCcccC
Q 036984            3 EFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRD--SLLGAWQT   80 (603)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~   80 (603)
                      -+|+|++|.+++..+..+ ++.+.. ..+|+|+.||+|+..++..    .+++++++|++|.+.+-.+..  ...+.|.+
T Consensus       146 ~LPsL~sL~i~~~~~~~~-dF~~lc-~sFpNL~sLDIS~TnI~nl----~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L  219 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDND-DFSQLC-ASFPNLRSLDISGTNISNL----SGISRLKNLQVLSMRNLEFESYQDLIDLFNL  219 (699)
T ss_pred             hCcccceEEecCceecch-hHHHHh-hccCccceeecCCCCccCc----HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence            489999999999766433 344544 4489999999999999864    578999999999999887764  33466779


Q ss_pred             CCCCEEEccCCCCCcCC--c----hhhcCCCCCcEEeccCCCCc
Q 036984           81 TSLQELNVASNKLTRNF--P----LGLCELVLLRELYIDNNDLS  118 (603)
Q Consensus        81 ~~L~~L~Ls~n~l~~~~--~----~~~~~l~~L~~L~L~~n~i~  118 (603)
                      ++|++||+|........  .    +.-..+|+||.||.|++.+.
T Consensus       220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            99999999988655421  0    01123555555555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.04  E-value=0.00027  Score=64.78  Aligned_cols=79  Identities=23%  Similarity=0.329  Sum_probs=44.7

Q ss_pred             cccceEEECcCC--CCcccCchhccCcCcCCEEecccccccccCCcC---CcCCCCCCEEeCCCCcCcccCC----CccC
Q 036984          399 LTSMSGIDLSCN--KLTGEIPTQIGYLTRIRALNLSHNNLTGTIPIT---FSNLKQIESLDLSYNLLHGKIP----QLIV  469 (603)
Q Consensus       399 l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~----~~~~  469 (603)
                      +++|+.|.++.|  ++.+.++.-...+++|++|+++.|+|..  ++.   +..+.+|..||+.+|.-+....    .+.-
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l  141 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL  141 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence            556666666666  4444444334445777777777777662  222   3344566677777776654222    2334


Q ss_pred             CCCCCceecc
Q 036984          470 LTTLAVFRVA  479 (603)
Q Consensus       470 l~~L~~L~l~  479 (603)
                      +++|++|+-.
T Consensus       142 l~~L~~LD~~  151 (260)
T KOG2739|consen  142 LPSLKYLDGC  151 (260)
T ss_pred             hhhhcccccc
Confidence            6666666544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.99  E-value=0.00043  Score=63.53  Aligned_cols=104  Identities=27%  Similarity=0.233  Sum_probs=72.1

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCC--cCCCCccCccc-CCCCCEEEccCCCCCcC-CchhhcCCCC
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDN--DLRDSLLGAWQ-TTSLQELNVASNKLTRN-FPLGLCELVL  106 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~-~~~~~~~l~~  106 (603)
                      +..|+.|++.+..++..    ..|-.+++|+.|.+|.|  ++..-...... +++|++|++++|++..+ .-..+..+.+
T Consensus        42 ~~~le~ls~~n~gltt~----~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL----TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccchhhhhhhccceeec----ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            56778888888777643    34678899999999999  44432222222 79999999999987631 1123567788


Q ss_pred             CcEEeccCCCCccCcC---ccCCCCCCCCEEEccc
Q 036984          107 LRELYIDNNDLSGSLP---LCLTNLTSLQVLDVSY  138 (603)
Q Consensus       107 L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~L~~  138 (603)
                      |..|++.+|..+...-   ..|.-+++|++|+-..
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            9999999997764211   2366678888887543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=4.1e-05  Score=70.26  Aligned_cols=84  Identities=25%  Similarity=0.238  Sum_probs=48.1

Q ss_pred             CCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcC-ccCCCCCCCCEE
Q 036984           57 LVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLP-LCLTNLTSLQVL  134 (603)
Q Consensus        57 l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L  134 (603)
                      +.+.+.|++-+|.+++|.  +.. ++.|++|.||-|+|+...  .+..+++|++|+|..|.|.+..- ..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            334455555555555442  222 666666666666666542  35666777777777776653211 235566777777


Q ss_pred             EcccCcCCcc
Q 036984          135 DVSYNQLTES  144 (603)
Q Consensus       135 ~L~~n~i~~~  144 (603)
                      -|..|...+.
T Consensus        94 WL~ENPCc~~  103 (388)
T KOG2123|consen   94 WLDENPCCGE  103 (388)
T ss_pred             hhccCCcccc
Confidence            7776665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=5e-05  Score=69.75  Aligned_cols=83  Identities=23%  Similarity=0.268  Sum_probs=48.2

Q ss_pred             CCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcc-c-CC
Q 036984            4 FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAW-Q-TT   81 (603)
Q Consensus         4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~-~~   81 (603)
                      +.+.+.|++.|+.+..    .+ +...|+.|++|.||-|+|+..    ..+..|.+|++|+|..|.|.++..-.. . ++
T Consensus        18 l~~vkKLNcwg~~L~D----Is-ic~kMp~lEVLsLSvNkIssL----~pl~rCtrLkElYLRkN~I~sldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD----IS-ICEKMPLLEVLSLSVNKISSL----APLQRCTRLKELYLRKNCIESLDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccH----HH-HHHhcccceeEEeeccccccc----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence            3455666666654421    11 223467777777777777643    346677777777777777666543222 2 66


Q ss_pred             CCCEEEccCCCCCc
Q 036984           82 SLQELNVASNKLTR   95 (603)
Q Consensus        82 ~L~~L~Ls~n~l~~   95 (603)
                      +|+.|.|..|.-.+
T Consensus        89 sLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   89 SLRTLWLDENPCCG  102 (388)
T ss_pred             hhhhHhhccCCccc
Confidence            66666666665443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.00  E-value=0.00077  Score=71.55  Aligned_cols=18  Identities=22%  Similarity=0.121  Sum_probs=11.5

Q ss_pred             hhhccCCCCCEEEcCCCc
Q 036984          221 KFLYHQHDLKNADLSHLN  238 (603)
Q Consensus       221 ~~~~~l~~L~~L~L~~n~  238 (603)
                      .....+++++.+.+..+.
T Consensus       356 ~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  356 LILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HHHhcCCCcchhhhhhhh
Confidence            345566677777777665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.53  E-value=0.0023  Score=67.84  Aligned_cols=134  Identities=20%  Similarity=0.079  Sum_probs=86.2

Q ss_pred             CCCCCceecccccccccccchHHHHHHhcCCCcEEEccCC-cCCCCCC--CccccCCCCCCCEEEccCCc-CCCCccCcc
Q 036984            3 EFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYS-RLNKNTI--LDQGFCQLVHLQELYIRDND-LRDSLLGAW   78 (603)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~--~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~   78 (603)
                      .++.|+.|.+.++....+..+..+. ..++.|+.|+++++ .......  .......+++|+.|+++++. +++.....+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHH-hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            3678888988887655554444444 44899999999974 2211111  11244567999999999988 776665555


Q ss_pred             c--CCCCCEEEccCCC-CCcCC-chhhcCCCCCcEEeccCCCCccC--cCccCCCCCCCCEEEcc
Q 036984           79 Q--TTSLQELNVASNK-LTRNF-PLGLCELVLLRELYIDNNDLSGS--LPLCLTNLTSLQVLDVS  137 (603)
Q Consensus        79 ~--~~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~  137 (603)
                      .  +++|++|.+.++. ++... ......+++|++|+++++.....  ......++++|+.|.+.
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            5  7899999988886 44322 22345678899999998865311  11223345666665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.21  E-value=0.0092  Score=32.47  Aligned_cols=20  Identities=60%  Similarity=0.865  Sum_probs=10.8

Q ss_pred             CCEEecccccccccCCcCCcC
Q 036984          426 IRALNLSHNNLTGTIPITFSN  446 (603)
Q Consensus       426 L~~L~Ls~N~l~~~~~~~~~~  446 (603)
                      |++|+|++|+++ .+|..|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            556666666665 44444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.42  E-value=0.00029  Score=72.94  Aligned_cols=85  Identities=25%  Similarity=0.278  Sum_probs=37.7

Q ss_pred             ccceEEECcCCCCcccC----chhccCcCc-CCEEeccccccccc----CCcCCcCC-CCCCEEeCCCCcCcccCC----
Q 036984          400 TSMSGIDLSCNKLTGEI----PTQIGYLTR-IRALNLSHNNLTGT----IPITFSNL-KQIESLDLSYNLLHGKIP----  465 (603)
Q Consensus       400 ~~L~~L~Ls~n~l~~~~----~~~l~~l~~-L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~Ls~N~l~~~~~----  465 (603)
                      .++++|++++|.++...    ...+...+. +..|++++|++.+.    ....+..+ ..++.++++.|+|+....    
T Consensus       204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~  283 (478)
T KOG4308|consen  204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA  283 (478)
T ss_pred             ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence            34555555555544211    112233333 44455555555432    11223333 345555555555553222    


Q ss_pred             -CccCCCCCCceecccCccc
Q 036984          466 -QLIVLTTLAVFRVAYNNLS  484 (603)
Q Consensus       466 -~~~~l~~L~~L~l~~N~l~  484 (603)
                       .+..++.++.+.+++|++.
T Consensus       284 ~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  284 EVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHhhhHHHHHhhcccCccc
Confidence             2333445555555555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.39  E-value=0.015  Score=31.57  Aligned_cols=11  Identities=27%  Similarity=0.428  Sum_probs=4.3

Q ss_pred             cEEeccCCCCc
Q 036984          108 RELYIDNNDLS  118 (603)
Q Consensus       108 ~~L~L~~n~i~  118 (603)
                      ++|++++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33344444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.42  E-value=0.0003  Score=72.87  Aligned_cols=88  Identities=24%  Similarity=0.151  Sum_probs=41.7

Q ss_pred             cccEEeccCCCCCCCc----ChhhccCCCCCEEEcCCCcccCCCCCCCc-ccccc-CCccEEEccCccccccCC----hh
Q 036984          204 QLTSISLSGYRDDGTF----PKFLYHQHDLKNADLSHLNLSGEFPNWLM-PIHCL-QKLATLDVSNNFFQGHIP----VE  273 (603)
Q Consensus       204 ~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~~~~l-~~L~~L~Ls~n~~~~~~~----~~  273 (603)
                      .+..+.+.+|.+....    ...+.....|+.|++++|.+.+..-..+. .+... ..++.|++..|.+++...    ..
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            3666666677665442    23344566677777777766521111000 01111 345556666665543222    12


Q ss_pred             hhhcCCCCcEEecCCCCcc
Q 036984          274 IGTYLPGLMHLNLSRNAFN  292 (603)
Q Consensus       274 ~~~~l~~L~~L~L~~n~l~  292 (603)
                      +.. ...++.++++.|.+.
T Consensus       168 L~~-~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  168 LEK-NEHLTELDLSLNGLI  185 (478)
T ss_pred             Hhc-ccchhHHHHHhcccc
Confidence            222 345555555555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.35  E-value=0.062  Score=30.55  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=12.2

Q ss_pred             CCCCEEEccCCcCCCCccCcc
Q 036984           58 VHLQELYIRDNDLRDSLLGAW   78 (603)
Q Consensus        58 ~~L~~L~Ls~n~i~~~~~~~~   78 (603)
                      ++|+.|+|++|+++.+++.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455666666666666555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.35  E-value=0.062  Score=30.55  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=12.2

Q ss_pred             CCCCEEEccCCcCCCCccCcc
Q 036984           58 VHLQELYIRDNDLRDSLLGAW   78 (603)
Q Consensus        58 ~~L~~L~Ls~n~i~~~~~~~~   78 (603)
                      ++|+.|+|++|+++.+++.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455666666666666555554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.17  E-value=0.066  Score=26.93  Aligned_cols=13  Identities=31%  Similarity=0.511  Sum_probs=4.3

Q ss_pred             CCCEEEccCCcCC
Q 036984           59 HLQELYIRDNDLR   71 (603)
Q Consensus        59 ~L~~L~Ls~n~i~   71 (603)
                      +|++|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444433

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.76  E-value=0.0055  Score=55.18  Aligned_cols=84  Identities=18%  Similarity=0.187  Sum_probs=55.3

Q ss_pred             hcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCce
Q 036984          398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVF  476 (603)
Q Consensus       398 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L  476 (603)
                      .....+.||++.|++. .....|.-++.|..|+++.|++. ..|..+.++..+..+++..|..+ ..| ++...+.++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            3455666777777665 33344566667777777777776 66666766666777777777766 445 66677777777


Q ss_pred             ecccCccc
Q 036984          477 RVAYNNLS  484 (603)
Q Consensus       477 ~l~~N~l~  484 (603)
                      ++..|.+.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            77776654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.25  E-value=0.25  Score=28.00  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=14.7

Q ss_pred             CCccEEEccCccccccCChhhhh
Q 036984          254 QKLATLDVSNNFFQGHIPVEIGT  276 (603)
Q Consensus       254 ~~L~~L~Ls~n~~~~~~~~~~~~  276 (603)
                      ++|+.|+|++|.+. .+|...|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHcc
Confidence            46777777777776 66666553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.25  E-value=0.25  Score=28.00  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=14.7

Q ss_pred             CCccEEEccCccccccCChhhhh
Q 036984          254 QKLATLDVSNNFFQGHIPVEIGT  276 (603)
Q Consensus       254 ~~L~~L~Ls~n~~~~~~~~~~~~  276 (603)
                      ++|+.|+|++|.+. .+|...|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHcc
Confidence            46777777777776 66666553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.72  E-value=0.047  Score=48.41  Aligned_cols=85  Identities=20%  Similarity=0.222  Sum_probs=55.2

Q ss_pred             CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCC
Q 036984          311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPM  390 (603)
Q Consensus       311 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (603)
                      -.++.++-++..|..+.-+.+..++.++.|.+.+|.-.+.  .++.                                  
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD--~~L~----------------------------------  144 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDD--WCLE----------------------------------  144 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhh--HHHH----------------------------------
Confidence            3566777777777777667777788888888877755311  0111                                  


Q ss_pred             CcchhhhhcccceEEECcCC-CCcccCchhccCcCcCCEEecccc
Q 036984          391 GKEETVQILTSMSGIDLSCN-KLTGEIPTQIGYLTRIRALNLSHN  434 (603)
Q Consensus       391 ~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~N  434 (603)
                         ......++|+.|++++| +||+..-..+..+++|+.|.|.+=
T Consensus       145 ---~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  145 ---RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             ---HhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence               11123567888888877 577665666777777777776653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.53  E-value=0.023  Score=51.29  Aligned_cols=67  Identities=16%  Similarity=0.153  Sum_probs=54.7

Q ss_pred             hhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcc
Q 036984          394 ETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG  462 (603)
Q Consensus       394 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  462 (603)
                      ..++.++.+..|+++.|.+. ..|..++....++++++.+|... ..|.++...+.++.+++-.|.+..
T Consensus        59 ~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen   59 KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcchH
Confidence            34566778888888888887 67778888888888888888888 778888889999999998888653

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=86.34  E-value=0.35  Score=30.43  Aligned_cols=27  Identities=22%  Similarity=0.299  Sum_probs=12.9

Q ss_pred             EEeeehhhhHHHHHHhhhhhcchhhhh
Q 036984          546 LITFTVSYGIAIIGIIGVLYVNPYWRR  572 (603)
Q Consensus       546 ~~~~~v~~~~~~~~~~~~~~~~~~~~~  572 (603)
                      .++++|++-++++++++.++++.||||
T Consensus        12 aIa~~VvVPV~vI~~vl~~~l~~~~rR   38 (40)
T PF08693_consen   12 AIAVGVVVPVGVIIIVLGAFLFFWYRR   38 (40)
T ss_pred             EEEEEEEechHHHHHHHHHHhheEEec
Confidence            345555554444444444444444444

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.56  E-value=0.41  Score=26.49  Aligned_cols=14  Identities=29%  Similarity=0.593  Sum_probs=5.8

Q ss_pred             CCCCEEecCCCcCc
Q 036984          335 KEVRLIDLSHNNLS  348 (603)
Q Consensus       335 ~~L~~L~Ls~n~l~  348 (603)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34455555555544

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.22  E-value=1.5  Score=24.94  Aligned_cols=15  Identities=27%  Similarity=0.567  Sum_probs=7.1

Q ss_pred             CCCCEEEccCCcCCC
Q 036984           58 VHLQELYIRDNDLRD   72 (603)
Q Consensus        58 ~~L~~L~Ls~n~i~~   72 (603)
                      .+|++|++++|.|+.
T Consensus         2 ~~L~~L~L~~NkI~~   16 (26)
T smart00365        2 TNLEELDLSQNKIKK   16 (26)
T ss_pred             CccCEEECCCCccce
Confidence            344555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	603
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-36
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-13
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-36
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-13
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		5e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		5e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  149 bits (376), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 155/503 (30%), Positives = 227/503 (45%), Gaps = 62/503 (12%)
Query: 57  LVHLQELYIRDN----DLRDSLLGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXXXXYI 112
           L  LQ L + +N    ++ D L GA  T  L  L+++ N      P             +
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDT--LTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 113 DNNDLSGSLPL-CLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPIS 171
            +N+ SG LP+  L  +  L+VLD+S+N+ +  +  S   L  S+  L LS+N+F  PI 
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI- 381
Query: 172 LEPLSNLSK-LKAFNGEIYLETESHYNSLTPKF----QLTSISLSGYRDDGTFPKFLYHQ 226
              L NL +  K    E+YL+       + P      +L S+ LS     GT P  L   
Sbjct: 382 ---LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNL 286
             L++  L    L GE P  LM +  L+   TL +  N   G IP    + L    +LN 
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLE---TLILDFNDLTGEIP----SGLSNCTNLN- 490
Query: 287 SRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNN 346
               +  LS NRL G IP WI RL  ++ L L+NN   G IPA+L   + +  +DL+ N 
Sbjct: 491 ----WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 347 LSGHIPFCL--------VNTALSEGYY----DAVAPTWDHASAPALSYFSPNGSPMGKEE 394
            +G IP  +         N    + Y     D +     H +   L +       + +  
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLS 605
Query: 395 TVQILT------------------SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNL 436
           T                       SM  +D+S N L+G IP +IG +  +  LNL HN++
Sbjct: 606 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 437 TGTIPITFSNLKQIESLDLSYNLLHGKIPQLI-VLTTLAVFRVAYNNLSGKIPDRVAQFS 495
           +G+IP    +L+ +  LDLS N L G+IPQ +  LT L    ++ NNLSG IP+ + QF 
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFE 724
Query: 496 TFEEDSYEGNPFLYGQPLSKSCD 518
           TF    +  NP L G PL + CD
Sbjct: 725 TFPPAKFLNNPGLCGYPLPR-CD 746

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 127/298 (42%), Gaps = 67/298 (22%)
Query: 222 FLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGL 281
           FL     L++ D+S   LSG+F      I    +L  L++S+N F G IP      L  L
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSR---AISTCTELKLLNISSNQFVGPIPP---LPLKSL 268
Query: 282 MHLNLSRNAFN-----------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIE 324
            +L+L+ N F                  DLS N   G++P +      +  L L++N   
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 325 GEIPAQ-LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYF 383
           GE+P   L +++ ++++DLS N  SG +P  L N + S                      
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS---------------------- 366
Query: 384 SPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTR--IRALNLSHNNLTGTIP 441
                         +LT    +DLS N  +G I   +    +  ++ L L +N  TG IP
Sbjct: 367 --------------LLT----LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 442 ITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFE 498
            T SN  ++ SL LS+N L G IP  L  L+ L   ++  N L G+IP  +    T E
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  149 bits (375), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 155/503 (30%), Positives = 227/503 (45%), Gaps = 62/503 (12%)
Query: 57  LVHLQELYIRDN----DLRDSLLGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXXXXYI 112
           L  LQ L + +N    ++ D L GA  T  L  L+++ N      P             +
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDT--LTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 113 DNNDLSGSLPL-CLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPIS 171
            +N+ SG LP+  L  +  L+VLD+S+N+ +  +  S   L  S+  L LS+N+F  PI 
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI- 384
Query: 172 LEPLSNLSK-LKAFNGEIYLETESHYNSLTPKF----QLTSISLSGYRDDGTFPKFLYHQ 226
              L NL +  K    E+YL+       + P      +L S+ LS     GT P  L   
Sbjct: 385 ---LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNL 286
             L++  L    L GE P  LM +  L+   TL +  N   G IP    + L    +LN 
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLE---TLILDFNDLTGEIP----SGLSNCTNLN- 493
Query: 287 SRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNN 346
               +  LS NRL G IP WI RL  ++ L L+NN   G IPA+L   + +  +DL+ N 
Sbjct: 494 ----WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 347 LSGHIPFCL--------VNTALSEGYY----DAVAPTWDHASAPALSYFSPNGSPMGKEE 394
            +G IP  +         N    + Y     D +     H +   L +       + +  
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLS 608
Query: 395 TVQILT------------------SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNL 436
           T                       SM  +D+S N L+G IP +IG +  +  LNL HN++
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 437 TGTIPITFSNLKQIESLDLSYNLLHGKIPQLI-VLTTLAVFRVAYNNLSGKIPDRVAQFS 495
           +G+IP    +L+ +  LDLS N L G+IPQ +  LT L    ++ NNLSG IP+ + QF 
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFE 727
Query: 496 TFEEDSYEGNPFLYGQPLSKSCD 518
           TF    +  NP L G PL + CD
Sbjct: 728 TFPPAKFLNNPGLCGYPLPR-CD 749

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 127/298 (42%), Gaps = 67/298 (22%)
Query: 222 FLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGL 281
           FL     L++ D+S   LSG+F      I    +L  L++S+N F G IP      L  L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSR---AISTCTELKLLNISSNQFVGPIPP---LPLKSL 271
Query: 282 MHLNLSRNAFN-----------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIE 324
            +L+L+ N F                  DLS N   G++P +      +  L L++N   
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 325 GEIPAQ-LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYF 383
           GE+P   L +++ ++++DLS N  SG +P  L N + S                      
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS---------------------- 369
Query: 384 SPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTR--IRALNLSHNNLTGTIP 441
                         +LT    +DLS N  +G I   +    +  ++ L L +N  TG IP
Sbjct: 370 --------------LLT----LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 442 ITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFE 498
            T SN  ++ SL LS+N L G IP  L  L+ L   ++  N L G+IP  +    T E
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 101/265 (38%), Gaps = 90/265 (33%)
Query: 297 NRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLV 356
           N L G IP  I +L Q+ YL + +  + G IP  L Q+K +  +D S+N LSG +P    
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP---- 142
Query: 357 NTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEI 416
                                                 ++  L ++ GI    N+++G I
Sbjct: 143 -------------------------------------PSISSLPNLVGITFDGNRISGAI 165
Query: 417 PTQIGYLTRI-RALNLSHNNLTGTIPITFSNL---------------------------- 447
           P   G  +++  ++ +S N LTG IP TF+NL                            
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 448 ------------------KQIESLDLSYNLLHGKIPQ-LIVLTTLAVFRVAYNNLSGKIP 488
                             K +  LDL  N ++G +PQ L  L  L    V++NNL G+IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 489 DRVAQFSTFEEDSYEGNPFLYGQPL 513
            +      F+  +Y  N  L G PL
Sbjct: 286 -QGGNLQRFDVSAYANNKCLCGSPL 309

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 100/247 (40%), Gaps = 40/247 (16%)
Query: 124 CLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKA 183
            L+ LTSLQ L+ S NQ+T+     PL  LT++E L +S+N       L  L+NL  L A
Sbjct: 146 ALSGLTSLQQLNFSSNQVTD---LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 184 FNGEIYLETESHYNSLTPKFQLTSISLSG--YRDDGTFPKFLYHQHDLKNADLSHLNLSG 241
            N +I     S    L     L  +SL+G   +D GT              +L+ L+L+ 
Sbjct: 203 TNNQI-----SDITPLGILTNLDELSLNGNQLKDIGTLASL---------TNLTDLDLAN 248
Query: 242 EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS------ 295
              + L P+  L KL  L +  N      P+     L  L +L L+ N   D+S      
Sbjct: 249 NQISNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLEDISPISNLK 305
Query: 296 --------YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNL 347
                   +N +    P  +  L ++  L   NN +     + L  L  +  +   HN +
Sbjct: 306 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 361
Query: 348 SGHIPFC 354
           S   P  
Sbjct: 362 SDLTPLA 368

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 150/350 (42%), Gaps = 56/350 (16%)
Query: 128 LTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGE 187
           L +L  ++ S NQLT+    +PL  LT + +++++NN       L  L+NL+ L  FN +
Sbjct: 62  LNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 188 I-------------YLETESH-YNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNAD 233
           I              LE  S+  + ++    LTS+    + +  T  K L +   L+  D
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLD 178
Query: 234 LSHLNLSGEFPNWLMPIHCLQKLATLD---VSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290
           +S         N +  I  L KL  L+    +NN      P+ I   L  L  L+L+ N 
Sbjct: 179 ISS--------NKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQ 227
Query: 291 FNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSG 349
             D+            +  L  ++ L LANN I    P + L +L E++   L  N +S 
Sbjct: 228 LKDIGT----------LASLTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISN 274
Query: 350 HIPF----CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
             P      L N  L+E   + ++P  +  +   L+ +  N S +     V  LT +  +
Sbjct: 275 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL 331
Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDL 455
             S NK++    + +  LT I  L+  HN ++   P+  +NL +I  L L
Sbjct: 332 FFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGL 377

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 56/350 (16%)
Query: 128 LTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGE 187
           L +L  ++ S NQLT+    +PL  LT + +++++NN       L  L+NL+ L  FN +
Sbjct: 66  LNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 122
Query: 188 I-------------YLETESH-YNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNAD 233
           I              LE  S+  + ++    LTS+    + +  T  K L +   L+  D
Sbjct: 123 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 182
Query: 234 LSHLNLSGEFPNWLMPIHCLQKLATLD---VSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290
           +S         N +  I  L KL  L+    +NN      P+ I   L  L  L+L+ N 
Sbjct: 183 ISS--------NKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQ 231
Query: 291 FNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSG 349
             D+            +  L  ++ L LANN I    P + L +L E++   L  N +S 
Sbjct: 232 LKDIGT----------LASLTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISN 278
Query: 350 HIPF----CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
             P      L N  L+E   + ++P  +  +   L+ +  N S +     V  LT +  +
Sbjct: 279 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL 335
Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDL 455
             + NK++    + +  LT I  L+  HN ++   P+  +NL +I  L L
Sbjct: 336 FFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGL 381

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 149/343 (43%), Gaps = 41/343 (11%)
Query: 128 LTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGE 187
           L +L  ++ S NQLT+    +PL  LT + +++++NN       L  L+NL+ L  FN +
Sbjct: 62  LNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 188 IY----LETESHYNSLT-PKFQLTSIS-LSGYRDDGTFPKFLYHQHDLKN-ADLSHLNLS 240
           I     L+  ++ N L      ++ IS LSG               DLK  A+L+ L   
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERL 178
Query: 241 GEFPNWLMPIHCLQKLATLD---VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYN 297
               N +  I  L KL  L+    +NN      P+ I   L  L  L+L+ N   D+   
Sbjct: 179 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDIGT- 234
Query: 298 RLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPF--- 353
                    +  L  ++ L LANN I    P + L +L E++   L  N +S   P    
Sbjct: 235 ---------LASLTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISPLAGL 282
Query: 354 -CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL 412
             L N  L+E   + ++P  +  +   L+ +  N S +     V  LT +  +  S NK+
Sbjct: 283 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKV 339
Query: 413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDL 455
           +    + +  LT I  L+  HN ++   P+  +NL +I  L L
Sbjct: 340 SDV--SSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGL 378

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	603
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-75
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-57
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  314 bits (806), Expect = 1e-97
 Identities = 141/513 (27%), Positives = 213/513 (41%), Gaps = 98/513 (19%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSL---LGAWQTTSLQELN 87
            + L  L+LS +  +   +      ++  L+ L +  N+    L   L    + SL  L+
Sbjct: 317 CSLLESLALSSNNFS-GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL-SASLLTLD 374

Query: 88  VASNKLTRNFPLGLCELVL--LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESI 145
           ++SN  +      LC+     L+ELY+ NN  +G +P  L+N + L  L +S+N L+ +I
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434

Query: 146 SSSPLMLLTSIEELILSNNHFQ--IPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKF 203
            SS L  L+ + +L L  N  +  IP  L  +  L  L              +N LT   
Sbjct: 435 PSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL-----------DFNDLT--- 479

Query: 204 QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSN 263
                        G  P  L +  +L    LS+  L+GE P W   I  L+ LA L +SN
Sbjct: 480 -------------GEIPSGLSNCTNLNWISLSNNRLTGEIPKW---IGRLENLAILKLSN 523

Query: 264 NFFQGHIPVEIGTYLPGLMHLNLSRNAFN------------DLSYNRLQGSIPNWIDRLP 311
           N F G+IP E+G     L+ L+L+ N FN             ++ N + G    +I    
Sbjct: 524 NSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582

Query: 312 QISYLLLANNYIE--GEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVA 369
                  A N +E  G    QL +L      +++     GH                   
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS----------------- 625

Query: 370 PTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL 429
                                    T     SM  +D+S N L+G IP +IG +  +  L
Sbjct: 626 ------------------------PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661

Query: 430 NLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIP 488
           NL HN+++G+IP    +L+ +  LDLS N L G+IP  +  LT L    ++ NNLSG IP
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

Query: 489 DRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNG 521
           +   QF TF    +  NP L G PL +    N 
Sbjct: 722 EM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  272 bits (697), Expect = 6e-82
 Identities = 129/476 (27%), Positives = 202/476 (42%), Gaps = 73/476 (15%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT----TSLQEL 86
            + L+ L++S + L+       G  +L  L+ L +  N +  + +  W        L+ L
Sbjct: 125 CSGLKFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

Query: 87  NVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESIS 146
            ++ NK++ +  +     V L  L + +N+ S  +P  L + ++LQ LD+S N+L+   S
Sbjct: 184 AISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240

Query: 147 SSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKA----FNGEIYLETESHYNSLTPK 202
            + +   T ++ L +S+N F  PI   PL +L  L      F GEI    +    +    
Sbjct: 241 RA-ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI---PDFLSGACD-- 294

Query: 203 FQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVS 262
             LT + LSG    G  P F      L++  LS  N SGE P     +  ++ L  LD+S
Sbjct: 295 -TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT--LLKMRGLKVLDLS 351

Query: 263 NNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI--DRLPQISYLLLAN 320
            N F G +P  +      L+ L        DLS N   G I   +  +    +  L L N
Sbjct: 352 FNEFSGELPESLTNLSASLLTL--------DLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 321 NYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPAL 380
           N   G+IP  L    E+  + LS N LSG IP  L +                       
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS----------------------- 440

Query: 381 SYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI 440
                             L+ +  + L  N L GEIP ++ Y+  +  L L  N+LTG I
Sbjct: 441 ------------------LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482

Query: 441 PITFSNLKQIESLDLSYNLLHGKIPQLI-VLTTLAVFRVAYNNLSGKIPDRVAQFS 495
           P   SN   +  + LS N L G+IP+ I  L  LA+ +++ N+ SG IP  +    
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  253 bits (649), Expect = 4e-75
 Identities = 109/470 (23%), Positives = 186/470 (39%), Gaps = 81/470 (17%)

Query: 37  LSLSYSRLNKNT-ILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTR 95
           + LS   LN     +      L  L+ L++ ++ +  S+ G   + SL  L+++ N L+ 
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114

Query: 96  NFP--LGLCELVLLRELYIDNNDLSGSLPL-CLTNLTSLQVLDVSYNQLTESISSSPLML 152
                  L     L+ L + +N L     +     L SL+VLD+S N ++ +     ++ 
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 153 --LTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT---PKF---- 203
                ++ L +S N     +    +S    L+     + +      N+ +   P      
Sbjct: 175 DGCGELKHLAISGNKISGDV---DVSRCVNLE----FLDV----SSNNFSTGIPFLGDCS 223

Query: 204 QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSN 263
            L  + +SG +  G F + +    +LK  ++S     G  P   +       L  L ++ 
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK-----SLQYLSLAE 278

Query: 264 NFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYI 323
           N F G IP  +      L  L        DLS N   G++P +      +  L L++N  
Sbjct: 279 NKFTGEIPDFLSGACDTLTGL--------DLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 324 EGEIPAQ-LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSY 382
            GE+P   L +++ ++++DLS N  SG +P  L N                         
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN------------------------- 365

Query: 383 FSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIG--YLTRIRALNLSHNNLTGTI 440
                          +  S+  +DLS N  +G I   +       ++ L L +N  TG I
Sbjct: 366 ---------------LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

Query: 441 PITFSNLKQIESLDLSYNLLHGKIPQ-LIVLTTLAVFRVAYNNLSGKIPD 489
           P T SN  ++ SL LS+N L G IP  L  L+ L   ++  N L G+IP 
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  204 bits (522), Expect = 3e-57
 Identities = 85/424 (20%), Positives = 152/424 (35%), Gaps = 111/424 (26%)

Query: 80  TTSLQELNVASNKLTRNF---PLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDV 136
              +  ++++S  L   F      L  L  L  L++ N+ ++GS+        SL  LD+
Sbjct: 49  DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDL 107

Query: 137 SYNQLTESISSSP-LMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESH 195
           S N L+  +++   L   + ++ L +S+N    P  +     L+ L+             
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL----------- 156

Query: 196 YNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQK 255
                                                DLS  ++SG      +      +
Sbjct: 157 -------------------------------------DLSANSISGANVVGWVLSDGCGE 179

Query: 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISY 315
           L  L +S N   G + V   +    L  L        D+S N     IP ++     + +
Sbjct: 180 LKHLAISGNKISGDVDV---SRCVNLEFL--------DVSSNNFSTGIP-FLGDCSALQH 227

Query: 316 LLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHA 375
           L ++ N + G+    +    E++L+++S N   G IP                       
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--------------------- 266

Query: 376 SAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHN 434
                                  L S+  + L+ NK TGEIP  + G    +  L+LS N
Sbjct: 267 ----------------------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 435 NLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIV--LTTLAVFRVAYNNLSGKIPDRVA 492
           +  G +P  F +   +ESL LS N   G++P   +  +  L V  +++N  SG++P+ + 
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 493 QFST 496
             S 
Sbjct: 365 NLSA 368

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  122 bits (308), Expect = 3e-29
 Identities = 45/255 (17%), Positives = 86/255 (33%), Gaps = 61/255 (23%)

Query: 250 IHC-LQKLATLDVSNNFFQ---GHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPN 305
           + C   K+ ++D+S+         +   + + L GL  L         LS + + GS+  
Sbjct: 45  VTCRDDKVTSIDLSSKPLNVGFSAVSSSLLS-LTGLESL--------FLSNSHINGSVS- 94

Query: 306 WIDRLPQISYLLLANNYIEGEIPA--QLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEG 363
                  ++ L L+ N + G +     L     ++ +++S N L                
Sbjct: 95  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK----- 149

Query: 364 YYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI--- 420
                                              L S+  +DLS N ++G         
Sbjct: 150 -----------------------------------LNSLEVLDLSANSISGANVVGWVLS 174

Query: 421 GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAY 480
                ++ L +S N ++G + +  S    +E LD+S N     IP L   + L    ++ 
Sbjct: 175 DGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISG 232

Query: 481 NNLSGKIPDRVAQFS 495
           N LSG     ++  +
Sbjct: 233 NKLSGDFSRAISTCT 247

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  184 bits (470), Expect = 1e-53
 Identities = 76/318 (23%), Positives = 126/318 (39%), Gaps = 40/318 (12%)

Query: 206 TSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMP--IHCLQKLATLDVSN 263
            +         G         + + N DLS LNL   +P   +P  +  L  L  L +  
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP---IPSSLANLPYLNFLYIGG 85

Query: 264 -NFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNY 322
            N   G IP  I   L  L +L         +++  + G+IP+++ ++  +  L  + N 
Sbjct: 86  INNLVGPIPPAIAK-LTQLHYL--------YITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

Query: 323 IEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVN-TALSEGYYDAVAPTWDHASAPALS 381
           + G +P  +  L  +  I    N +SG IP    + + L                   +S
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT--------------IS 182

Query: 382 YFSPNGS-PMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI 440
                G  P     T   L +++ +DLS N L G+     G     + ++L+ N+L   +
Sbjct: 183 RNRLTGKIP----PTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 441 PITFSNLKQIESLDLSYNLLHGKIPQLIV-LTTLAVFRVAYNNLSGKIPDRVAQFSTFEE 499
                  K +  LDL  N ++G +PQ +  L  L    V++NNL G+IP        F+ 
Sbjct: 238 G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDV 295

Query: 500 DSYEGNPFLYGQPLSKSC 517
            +Y  N  L G PL  +C
Sbjct: 296 SAYANNKCLCGSPL-PAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  152 bits (387), Expect = 6e-42
 Identities = 70/369 (18%), Positives = 116/369 (31%), Gaps = 112/369 (30%)

Query: 79  QTTSLQELNVASNKL--TRNFPLGLCELVLLRELYI-DNNDLSGSLPLCLTNLTSLQVLD 135
           QT  +  L+++   L      P  L  L  L  LYI   N+L G +P  +  LT L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 136 VSYNQLTESISSSPLMLLTSIEELILSNNHF--QIPISLEPLSNLSKLKAFNGEIYLETE 193
           +++  ++ +I    L  + ++  L  S N     +P S+  L NL  +            
Sbjct: 108 ITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI------------ 154

Query: 194 SHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCL 253
                                                        +SG  P+        
Sbjct: 155 ---------------------------------------TFDGNRISGAIPDSYG--SFS 173

Query: 254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQI 313
           +   ++ +S N   G IP           +LNL+   F DLS N L+G            
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFA-------NLNLA---FVDLSRNMLEGDASVLFGSDKNT 223

Query: 314 SYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWD 373
             + LA N +  ++  ++   K +  +DL +N + G +P  L                  
Sbjct: 224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ---------------- 266

Query: 374 HASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 433
                                    L  +  +++S N L GEIP   G L R      ++
Sbjct: 267 -------------------------LKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300

Query: 434 NNLTGTIPI 442
           N      P+
Sbjct: 301 NKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  131 bits (332), Expect = 3e-34
 Identities = 64/330 (19%), Positives = 114/330 (34%), Gaps = 76/330 (23%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRD-NDLRDSL---LGAWQTTSLQELNV 88
            +  L LS   L K   +      L +L  LYI   N+L   +   +   + T L  L +
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYI 108

Query: 89  ASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSS 148
               ++   P  L ++  L  L    N LSG+LP  +++L +L  +    N+++ +I  S
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 149 PLMLLTSIEELILSNNHF--QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLT 206
                     + +S N    +IP +    +NL+                           
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPT---FANLN--------------------------- 198

Query: 207 SISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFF 266
                                 L   DLS   L G+           +    + ++ N  
Sbjct: 199 ----------------------LAFVDLSRNMLEGDASVL---FGSDKNTQKIHLAKNSL 233

Query: 267 QGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGE 326
              +  ++G     L  L        DL  NR+ G++P  + +L  +  L ++ N + GE
Sbjct: 234 AFDLG-KVGL-SKNLNGL--------DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 327 IPAQLCQLKEVRLIDLSHNNL--SGHIPFC 354
           IP Q   L+   +   ++N       +P C
Sbjct: 284 IP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  118 bits (299), Expect = 9e-30
 Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 46/214 (21%)

Query: 287 SRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGE--IPAQLCQLKEVRLIDLSH 344
           S     D       G + +   +  +++ L L+   +     IP+ L  L  +  + +  
Sbjct: 26  SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85

Query: 345 -NNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMS 403
            NNL G IP  +                                           LT + 
Sbjct: 86  INNLVGPIPPAIAK-----------------------------------------LTQLH 104

Query: 404 GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGK 463
            + ++   ++G IP  +  +  +  L+ S+N L+GT+P + S+L  +  +    N + G 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 464 IPQLIV-LTTLAVF-RVAYNNLSGKIPDRVAQFS 495
           IP      + L     ++ N L+GKIP   A  +
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  192 bits (489), Expect = 3e-53
 Identities = 87/503 (17%), Positives = 172/503 (34%), Gaps = 60/503 (11%)

Query: 31  MASLRLLSLSYSRLNKN-TILDQGFCQLVHLQELYIRDNDLR---DSLLGAWQTTSLQEL 86
           +  L  L L+  +L  + T           ++ L + ++ L    ++     + T+L  L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 87  NVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESIS 146
           +++ N L          L  L   +++ N++       L  L +++ L++  +   +SIS
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

Query: 147 --------SSPLMLLTSIEELILSNNHFQ--IPISLEPLSNLSKLKAFNGEIYLETESHY 196
                         L  +E L + +N            L NL  L   N    L T ++ 
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373

Query: 197 N-SLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQK 255
                    L  ++L+  +              L+  DL    +  E          L+ 
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG--QEWRGLEN 431

Query: 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISY 315
           +  + +S N +           +P L  L L R A  ++       S P+    L  ++ 
Sbjct: 432 IFEIYLSYNKYLQLTRNSFAL-VPSLQRLMLRRVALKNV------DSSPSPFQPLRNLTI 484

Query: 316 LLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHA 375
           L L+NN I       L  L+++ ++DL HNN                             
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNN----------------------------- 515

Query: 376 SAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN 435
               L+    + +P G    ++ L+ +  ++L  N            L  ++ ++L  NN
Sbjct: 516 ----LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571

Query: 436 LTGTIPITFSNLKQIESLDLSYNLLHGKIPQLI--VLTTLAVFRVAYNNLSGKIPDRVAQ 493
           L       F+N   ++SL+L  NL+     ++       L    + +N       + +A 
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC-TCESIAW 630

Query: 494 FSTFEEDSYEGNPFLYGQPLSKS 516
           F  +  +++   P L    L  +
Sbjct: 631 FVNWINETHTNIPELSSHYLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  184 bits (468), Expect = 2e-50
 Identities = 88/473 (18%), Positives = 168/473 (35%), Gaps = 40/473 (8%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVASN 91
            L  L + ++ ++   +  +   +L  L+ L ++ N+L           T+L EL++ SN
Sbjct: 50  QLTSLDVGFNTIS--KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 92  KLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLM 151
            + +       +   L  L + +N LS +       L +LQ L +S N++    S    +
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167

Query: 152 L-LTSIEELILSNNHFQ--IPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSI 208
              +S+++L LS+N  +   P     +  L  L   N ++                + ++
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 209 SLSGYRDDGTFPKFLYHQHD--LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFF 266
           SLS  +   T            L   DLS+ NL+    +       L +L    +  N  
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF---AWLPQLEYFFLEYNNI 284

Query: 267 QGHIPVEIGTYLPGLMHLNLSRNAFN-DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEG 325
           Q      +   L  + +LNL R+     +S   L          L  + +L + +N I G
Sbjct: 285 QHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 326 EIPAQLCQLKEVRLIDLSHNNLS-----GHIPFCLVNTALSEGYYDAVAPTWDHASAPAL 380
                   L  ++ + LS++  S           L ++ L                   L
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN---------------L 388

Query: 381 SYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQ-IGYLTRIRALNLSHNNLTGT 439
           +    +       +    L  +  +DL  N++  E+  Q    L  I  + LS+N     
Sbjct: 389 TKNKISKIE---SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 440 IPITFSNLKQIESLDLSYNLLHG--KIPQLIV-LTTLAVFRVAYNNLSGKIPD 489
              +F+ +  ++ L L    L      P     L  L +  ++ NN++    D
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  174 bits (444), Expect = 5e-47
 Identities = 85/498 (17%), Positives = 160/498 (32%), Gaps = 100/498 (20%)

Query: 25  QIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSL 83
           Q+  +L  ++ +L+L++++L    +    F +   L  L +  N +        Q    L
Sbjct: 18  QVPDDLPTNITVLNLTHNQLR--RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75

Query: 84  QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE 143
           + LN+  N+L++           L EL++ +N +            +L  LD+S+N L+ 
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS- 134

Query: 144 SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKF 203
           S      + L +++EL+LSNN  Q  +  E L   +                        
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANS---------------------- 171

Query: 204 QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSN 263
            L  + LS  +     P   +    L    L+++ L       L        +  L +SN
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 264 NFFQGHIPVEI-GTYLPGLMHLNLSRNAFN----------------DLSYNRLQGSIPNW 306
           +           G     L  L+LS N  N                 L YN +Q    + 
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 307 IDRLPQISYLLLANNY---------IEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVN 357
           +  L  + YL L  ++         +          LK +  +++  N++ G        
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 358 TALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIP 417
                                                    L ++  + LS +  +    
Sbjct: 352 -----------------------------------------LINLKYLSLSNSFTSLRTL 370

Query: 418 TQIG----YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ--LIVLT 471
           T         + +  LNL+ N ++      FS L  +E LDL  N +  ++       L 
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 472 TLAVFRVAYNNLSGKIPD 489
            +    ++YN       +
Sbjct: 431 NIFEIYLSYNKYLQLTRN 448

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  173 bits (441), Expect = 1e-46
 Identities = 104/531 (19%), Positives = 193/531 (36%), Gaps = 111/531 (20%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSEL---MASLRLLSLSYSRLNKNTILDQGFCQL 57
           F    NL  L +       + S  +I +       +L  L LS++ L+  +       QL
Sbjct: 93  FAFCTNLTELHLM------SNSIQKIKNNPFVKQKNLITLDLSHNGLS--STKLGTQVQL 144

Query: 58  VHLQELYIRDNDLR---DSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDN 114
            +LQEL + +N ++      L  +  +SL++L ++SN++    P     +  L  L+++N
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 115 NDLSGSLP---LCLTNLTSLQVLDVSYNQLTESISSS-PLMLLTSIEELILSNNHFQIPI 170
             L  SL          TS++ L +S +QL+ + +++   +  T++  L LS N+  + +
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-V 263

Query: 171 SLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLK 230
             +  + L +L+      +L     YN++     L S SL G  +     ++L  +    
Sbjct: 264 GNDSFAWLPQLE----YFFL----EYNNIQ---HLFSHSLHGLFNV----RYLNLKRSFT 308

Query: 231 NADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290
              +S  +L             L+ L  L++ +N   G I   + T L  L +L+LS + 
Sbjct: 309 KQSISLASLPKIDDF---SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSF 364

Query: 291 FN--------------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQ 330
            +                    +L+ N++     +    L  +  L L  N I  E+  Q
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 331 -LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSP 389
               L+ +  I LS+N                                            
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFAL-------------------------------- 452

Query: 390 MGKEETVQILTSMSGIDLSCNKLTG--EIPTQIGYLTRIRALNLSHNNLTGTIPITFSNL 447
                    + S+  + L    L      P+    L  +  L+LS+NN+          L
Sbjct: 453 ---------VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 448 KQIESLDLSYNLLH---------GKIPQLIVLTTLAVFRVAYNNLSGKIPD 489
           +++E LDL +N L          G I  L  L+ L +  +  N       +
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  140 bits (355), Expect = 2e-35
 Identities = 76/426 (17%), Positives = 134/426 (31%), Gaps = 97/426 (22%)

Query: 80  TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN 139
           T S +  + +  KLT+  P  L     +  L + +N L        T  + L  LDV +N
Sbjct: 3   TVSHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 140 QLTESISSSPLMLLTSIEELILSNNHFQ--IPISLEPLSNLSKLKAFNGEIYLETESHYN 197
            +++         L  ++ L L +N        +    +NL++L       +L      N
Sbjct: 60  TISKLEPEL-CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL-------HL----MSN 107

Query: 198 SLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLA 257
                  +  I                 Q +L   DLSH  LS            L+ L 
Sbjct: 108 ------SIQKIK----------NNPFVKQKNLITLDLSHNGLSSTKLGTQ---VQLENLQ 148

Query: 258 TLDVSNNFFQGHIPVEIGTY-LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYL 316
            L +SNN  Q     E+  +    L  L        +LS N+++   P     + ++  L
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKL--------ELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 317 LLANNYIEGEIPAQLC---QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWD 373
            L N  +   +  +LC       +R + LS++ LS       +                 
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL--------------- 245

Query: 374 HASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 433
                                     T+++ +DLS N L         +L ++    L +
Sbjct: 246 ------------------------KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 434 NNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ----------LIVLTTLAVFRVAYNNL 483
           NN+      +   L  +  L+L  +     I               L  L    +  N++
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 484 SGKIPD 489
            G   +
Sbjct: 342 PGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  136 bits (344), Expect = 6e-34
 Identities = 84/453 (18%), Positives = 140/453 (30%), Gaps = 108/453 (23%)

Query: 58  VHLQELYIRDNDLR---DSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDN 114
           V  +        L    D L      T++  LN+  N+L R           L  L +  
Sbjct: 4   VSHEVADCSHLKLTQVPDDLP-----TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 115 NDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEP 174
           N +S   P     L  L+VL++ +N+L++    +     T++ EL L +N  Q   +  P
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSNSIQKIKN-NP 116

Query: 175 LSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADL 234
                 L      + L     +N       L+S         GT          L+N  L
Sbjct: 117 FVKQKNLI----TLDL----SHN------GLSSTK------LGTQ-------VQLEN--L 147

Query: 235 SHLNLSG----EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290
             L LS        +  + I     L  L++S+N  +   P      +  L  L      
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA-IGRLFGL------ 200

Query: 291 FNDLSYNRLQGSIPNWI---DRLPQISYLLLANNYIEGEIPAQLCQLKEVRL--IDLSHN 345
              L+  +L  S+   +        I  L L+N+ +          LK   L  +DLS+N
Sbjct: 201 --FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

Query: 346 NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
           NL+                                                  L  +   
Sbjct: 259 NLNVVGNDSFAW-----------------------------------------LPQLEYF 277

Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHN---------NLTGTIPITFSNLKQIESLDLS 456
            L  N +       +  L  +R LNL  +         +L      +F  LK +E L++ 
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 457 YNLLHGKIPQLIV-LTTLAVFRVAYNNLSGKIP 488
            N + G    +   L  L    ++ +  S +  
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  131 bits (331), Expect = 3e-32
 Identities = 66/368 (17%), Positives = 128/368 (34%), Gaps = 55/368 (14%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVS------ELMASLRLLSLSYSRLNKNTILDQGF 54
            H   N+ +L + +   + + S   +        + +  L  L++  + +    I    F
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP--GIKSNMF 349

Query: 55  CQLVHLQELYIRDN-----DLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRE 109
             L++L+ L + ++      L +    +   + L  LN+  NK+++        L  L  
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409

Query: 110 LYIDNNDLSGSLP-LCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ- 167
           L +  N++   L       L ++  + +SYN+  +   +S   L+ S++ L+L     + 
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVPSLQRLMLRRVALKN 468

Query: 168 IPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQH 227
           +  S  P   L  L      + L      N       + +I+             L    
Sbjct: 469 VDSSPSPFQPLRNLT----ILDL----SNN------NIANIN----------DDMLEGLE 504

Query: 228 DLKNADLSHLNLS-----GEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLM 282
            L+  DL H NL+           +  +  L  L  L++ +N F   IPVE+   L  L 
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELK 563

Query: 283 HLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLC-QLKEVRLID 341
            +        DL  N L     +  +    +  L L  N I            + +  +D
Sbjct: 564 II--------DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615

Query: 342 LSHNNLSG 349
           +  N    
Sbjct: 616 MRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  129 bits (326), Expect = 1e-31
 Identities = 60/328 (18%), Positives = 117/328 (35%), Gaps = 34/328 (10%)

Query: 30  LMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNV 88
           L  S    S+S + L K  I D  F  L  L+ L + DND+       +    +L+ L++
Sbjct: 303 LKRSFTKQSISLASLPK--IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 89  ASNKLT----RNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTES 144
           +++  +     N          L  L +  N +S       + L  L+VLD+  N++ + 
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 145 ISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQ 204
           ++      L +I E+ LS N +   ++    + +  L+     + L       +L     
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQ----RLML----RRVALK---- 467

Query: 205 LTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNN 264
                     +  + P       +L   DLS+ N++    + L     L+KL  LD+ +N
Sbjct: 468 ----------NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG---LEKLEILDLQHN 514

Query: 265 FFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIE 324
                +        P      LS     +L  N            L ++  + L  N + 
Sbjct: 515 NLA-RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 325 GEIPAQLCQLKEVRLIDLSHNNLSGHIP 352
               +       ++ ++L  N ++    
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.9 bits (247), Expect = 8e-22
 Identities = 39/241 (16%), Positives = 77/241 (31%), Gaps = 56/241 (23%)

Query: 252 CLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLP 311
           C       D S+      +P ++      +  L        +L++N+L+        R  
Sbjct: 2   CTVSHEVADCSHLKLT-QVPDDL---PTNITVL--------NLTHNQLRRLPAANFTRYS 49

Query: 312 QISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPT 371
           Q++ L +  N I    P    +L  +++++L HN LS                       
Sbjct: 50  QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF-------------- 95

Query: 372 WDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL 431
                                       T+++ + L  N +             +  L+L
Sbjct: 96  ---------------------------CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 432 SHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLI---VLTTLAVFRVAYNNLSGKIP 488
           SHN L+ T   T   L+ ++ L LS N +     + +     ++L    ++ N +    P
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188

Query: 489 D 489
            
Sbjct: 189 G 189

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  187 bits (477), Expect = 7e-51
 Identities = 82/526 (15%), Positives = 150/526 (28%), Gaps = 119/526 (22%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
               + L    + Q  +  N     I  +   SL+   +     N+ T + +   +L  L
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT-NRITFISKAIQRLTKL 450

Query: 61  QELYIRDNDLRDSLLGAWQT--------------------TSLQELNVASNKLTRNFPLG 100
           Q +Y  ++      +                           L ++ + +       P  
Sbjct: 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 101 LCELVLLRELYIDNNDLSG---------SLPLCLTNLTSLQVLDVSYNQLTESISSSPLM 151
           L +L  L+ L I  N              L         +Q+  + YN L E  +S+ L 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 152 LLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLS 211
            +  +  L   +N  +   +      L+ L        L     YN      Q+  I   
Sbjct: 571 KMVKLGLLDCVHNKVRHLEAFGTNVKLTDL-------KL----DYN------QIEEIP-- 611

Query: 212 GYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIP 271
                     F      ++    SH  L    PN       +  + ++D S N       
Sbjct: 612 --------EDFCAFTDQVEGLGFSHNKLK-YIPNIF-NAKSVYVMGSVDFSYNKIGS-EG 660

Query: 272 VEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIE------- 324
             I   +     +N S      LSYN +Q            IS ++L+NN +        
Sbjct: 661 RNISCSMDDYKGINAST---VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 325 GEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFS 384
                       +  IDL  N L+  +                                 
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTS-LS-------------------------------- 744

Query: 385 PNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH------NNLTG 438
                   +     L  +S +D+S N  +   PTQ    ++++A  + H      N +  
Sbjct: 745 -------DDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796

Query: 439 TIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
             P   +    +  L +  N +  K+ + +    L +  +A N   
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  143 bits (361), Expect = 6e-36
 Identities = 69/481 (14%), Positives = 136/481 (28%), Gaps = 103/481 (21%)

Query: 56  QLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDN 114
               +  L +     +  +  A  Q T L+ L+  ++  T +  L   E +         
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 115 NDLSGSLP-LCLTNLTSLQVLDVSYNQLTE-----SISSSPLMLLTSIEELILSNNHFQI 168
           + +      + L     L + D+  + +        I     + L   +   L+N    I
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 169 PISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHD 228
             +++ L+ L  +   N                       +    +          +  D
Sbjct: 441 SKAIQRLTKLQIIYFANSPF--------TYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492

Query: 229 LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQG---------HIPVEIGTYLP 279
           L + +L +     + P++   ++ L +L +L+++ N              +  +  T  P
Sbjct: 493 LTDVELYNCPNMTQLPDF---LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT-GP 548

Query: 280 GLMHLNLSRNAFN-----------------DLSYNRLQGSIPNWIDRLPQISYLLLANNY 322
            +    +  N                    D  +N++            +++ L L  N 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQ 606

Query: 323 IEGEIPAQLCQ-LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALS 381
           IE EIP   C    +V  +  SHN L                                  
Sbjct: 607 IE-EIPEDFCAFTDQVEGLGFSHNKLKY-------------------------------- 633

Query: 382 YFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPT-----QIGYLTRIRALNLSHNNL 436
              PN            +  M  +D S NK+  E                  + LS+N +
Sbjct: 634 --IPNIFNAKS------VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685

Query: 437 TGTIPITFSNLKQIESLDLSYNLL--------HGKIPQLIVLTTLAVFRVAYNNLSGKIP 488
                  F+    I ++ LS NL+          K         L    + +N L+  + 
Sbjct: 686 QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LS 744

Query: 489 D 489
           D
Sbjct: 745 D 745

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (262), Expect = 1e-23
 Identities = 66/335 (19%), Positives = 114/335 (34%), Gaps = 59/335 (17%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVA 89
           M  L LL   ++++     L+  F   V L +L +  N + +        T  ++ L  +
Sbjct: 572 MVKLGLLDCVHNKV---RHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627

Query: 90  SNKLTRNFP--LGLCELVLLRELYIDNNDLSG-----SLPLCLTNLTSLQVLDVSYNQLT 142
            NKL    P       + ++  +    N +       S  +      +   + +SYN++ 
Sbjct: 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 143 ESISSSPLMLLTSIEELILSNNHF-QIPISL-----EPLSNLSKLKAFNGEIYLETESHY 196
           +  +       + I  +ILSNN    IP +          N   L      I L     +
Sbjct: 687 KFPTEL-FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT----TIDL----RF 737

Query: 197 NSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKL 256
           N      +LTS+S     DD       Y    L N D+S+   S  FP   +    L+  
Sbjct: 738 N------KLTSLS-----DDFRATTLPY----LSNMDVSYNCFS-SFPTQPLNSSQLKAF 781

Query: 257 ---ATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQI 313
                 D   N      P  I T  P L+ L         +  N ++  +   +   PQ+
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITT-CPSLIQL--------QIGSNDIR-KVDEKL--TPQL 829

Query: 314 SYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS 348
             L +A+N         +C   E  +  L ++   
Sbjct: 830 YILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (262), Expect = 1e-23
 Identities = 40/337 (11%), Positives = 92/337 (27%), Gaps = 81/337 (24%)

Query: 1   FHEFKNLEHLVMDQ-MLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQ-GFCQLV 58
           F     L  L +D   + E+   F          +  L  S+++L    I +      + 
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFCA----FTDQVEGLGFSHNKLK--YIPNIFNAKSVY 644

Query: 59  HLQELYIRDNDLRD------SLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYI 112
            +  +    N +          +  ++  +   + ++ N++ +           +  + +
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704

Query: 113 DNNDLS-------GSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNH 165
            NN ++               N   L  +D+ +N+LT          L  +  + +S N 
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 166 FQ-IPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLY 224
           F   P      S L                                              
Sbjct: 765 FSSFPTQPLNSSQLKAF------------------------------------------- 781

Query: 225 HQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHL 284
                   D     +  ++P     I     L  L + +N  +  +  ++    P L  L
Sbjct: 782 --GIRHQRDAEGNRILRQWPTG---ITTCPSLIQLQIGSNDIR-KVDEKL---TPQLYIL 832

Query: 285 NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANN 321
           +++ N         +   + +    +    Y+LL + 
Sbjct: 833 DIADN-------PNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.5 bits (240), Expect = 5e-21
 Identities = 49/369 (13%), Positives = 109/369 (29%), Gaps = 45/369 (12%)

Query: 128 LTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGE 187
           LT    + +   +  E I      L    E L   N  +    ++    +      FN E
Sbjct: 251 LTKDANVPIQLKETAEYIKD-YKALKAIWEALDGKNWRYY-SGTINNTIHSLNWN-FNKE 307

Query: 188 IYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWL 247
           + +  +     L    ++T +SL+G+   G  P  +    +LK       + +       
Sbjct: 308 LDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL-- 365

Query: 248 MPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI 307
                       +   +  + H       Y   L   +L ++A N          I    
Sbjct: 366 -FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP---EMKPIKKDS 421

Query: 308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDA 367
               + + +    N I   I   + +L ++++I  +++  +          A        
Sbjct: 422 RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN------- 473

Query: 368 VAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIR 427
                         Y     +    E +   L  ++ ++L       ++P  +  L  ++
Sbjct: 474 ------------SDYAKQYENE---ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 428 ALNLSHNNLTG---------TIPITFSNLKQIESLDLSYNLLHGKIPQLIV---LTTLAV 475
           +LN++ N              +        +I+   + YN L    P       +  L +
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGL 577

Query: 476 FRVAYNNLS 484
               +N + 
Sbjct: 578 LDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 33/226 (14%), Positives = 73/226 (32%), Gaps = 34/226 (15%)

Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIP 352
           +   +         +D   +++ L LA    +G +P  + QL E++++    ++ +    
Sbjct: 305 NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

Query: 353 -----------FCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTS 401
                             +   Y           +   L   + N +P  K        S
Sbjct: 365 LFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS 424

Query: 402 MSG--IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTG-------------------TI 440
           +    I    N++T  I   I  LT+++ +  +++  T                      
Sbjct: 425 LKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483

Query: 441 PITFSNLKQIESLDLSYNLLHGKIPQLIV-LTTLAVFRVAYNNLSG 485
            +++SNLK +  ++L       ++P  +  L  L    +A N    
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 15/129 (11%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDS--LLGAW-----QTTSL 83
           +  L  + +SY+     +           L+   IR     +   +L  W        SL
Sbjct: 752 LPYLSNMDVSYNCF---SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 84  QELNVASNKLTRNFPLGLCELVLLRELYIDNNDL-SGSLPLCLTNLTS-LQVLDVSYNQL 141
            +L + SN +       L     L  L I +N   S  +      + + + VL     Q 
Sbjct: 809 IQLQIGSNDIR-KVDEKLTPQ--LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

Query: 142 TESISSSPL 150
                +  +
Sbjct: 866 IRGCDALGI 874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  177 bits (452), Expect = 2e-48
 Identities = 74/506 (14%), Positives = 155/506 (30%), Gaps = 88/506 (17%)

Query: 35  RLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAW-----QTTSLQELNVA 89
           R+  LS      +  +     QL  L+ L +  +  + +             S ++    
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 90  SNKLTRNFP--LGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISS 147
                + F       +   L +  I+++    S+            +    N +T  +S 
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSK 200

Query: 148 SPLMLLTSIEELILSNNHF--QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQL 205
           + +M LT + +  + N+ F  +         N    +      Y   +  +++L     L
Sbjct: 201 A-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ-----QYKTEDLKWDNLK---DL 251

Query: 206 TSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSG-----EFPNWLMPIHCLQKLATLD 260
           T + +    +    P FL    +++  +++           +    L      +K+  + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 261 VS-NNFFQGHIPVEIGTYLPGLMHLNLSRNAFN---------------DLSYNRLQGSIP 304
           +  NN     +   +   +  L  L    N                  +L+YN++     
Sbjct: 312 IGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPA 370

Query: 305 NWIDRLPQISYLLLANNYIEGEIPA--QLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSE 362
           N+     Q+  L  A+N ++  IP       +  +  ID S+N +             + 
Sbjct: 371 NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 363 GYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGY 422
                                                 ++S I+LS N+++         
Sbjct: 430 FK----------------------------------GINVSSINLSNNQISKFPKELFST 455

Query: 423 LTRIRALNLSHNNLTG-------TIPITFSNLKQIESLDLSYNLLHGKIPQLIV--LTTL 473
            + + ++NL  N LT             F N   + S+DL +N L           L  L
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

Query: 474 AVFRVAYNNLSGKIPDRVAQFSTFEE 499
               ++YN+ S   P +    ST + 
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKG 540

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  171 bits (435), Expect = 4e-46
 Identities = 67/472 (14%), Positives = 141/472 (29%), Gaps = 93/472 (19%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSL---LGAWQTTSLQELNVA 89
           +    +  Y    +    D  +  L  L ++ + +      L   L       +Q +NVA
Sbjct: 226 AWENENSEY--AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK--ALPEMQLINVA 281

Query: 90  SNKLTR--------NFPLGLCELVLLRELYIDNNDL-SGSLPLCLTNLTSLQVLDVSYNQ 140
            N+                      ++ +YI  N+L +  +   L  +  L +L+  YNQ
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLKAFNGEIYLETESHYNSL 199
           L   + +        +  L L+ N    IP +        +++     +       +N  
Sbjct: 342 LEGKLPA--FGSEIKLASLNLAYNQITEIPANF--CGFTEQVE----NLSF----AHN-- 387

Query: 200 TPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHC----LQK 255
               +L  I       +    K +     +   D S+  +         P+         
Sbjct: 388 ----KLKYIP------NIFDAKSVSV---MSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISY 315
           ++++++SNN        E+ +    L  +NL  N   ++  N L             ++ 
Sbjct: 435 VSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNSL-KDENENFKNTYLLTS 492

Query: 316 LLLANNYIEGEIPA--QLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWD 373
           + L  N +   +    +   L  +  IDLS+N+ S   P                     
Sbjct: 493 IDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQP------------------ 532

Query: 374 HASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 433
                                T++     +  D   N+   E P  I     +  L +  
Sbjct: 533 -----------------LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 434 NNLTGTIPITFSNLKQIESLDLSYN-LLHGKIPQLIVLTTLAVFRVAYNNLS 484
           N++     +       I  LD+  N  +   +  +       ++ + Y+   
Sbjct: 576 NDIRK---VNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  168 bits (427), Expect = 6e-45
 Identities = 70/491 (14%), Positives = 151/491 (30%), Gaps = 97/491 (19%)

Query: 20  NTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ 79
           +     I      +L+   +     N  T + +   +L  L++ Y+ ++      +    
Sbjct: 169 DPQQKSIKKSSRITLKDTQIGQLS-NNITFVSKAVMRLTKLRQFYMGNS----PFVAENI 223

Query: 80  TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN 139
             + +  N    +  +   L    L  L ++ + N      LP  L  L  +Q+++V+ N
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 140 QLTESISS-------SPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLKAFNGEIYLE 191
           +              +   +   I+ + +  N+ +  P+    L  + KL      +   
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS-LQKMKKLG----MLEC- 337

Query: 192 TESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSG----EFPNWL 247
               YN L                 G  P F           L+ LNL+     E P   
Sbjct: 338 ---LYNQLE----------------GKLPAF----GSEIK--LASLNLAYNQITEIPANF 372

Query: 248 MPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI 307
                 +++  L  ++N  +    +     +  +  ++ S N    +        +    
Sbjct: 373 --CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF-DPLDPTP 429

Query: 308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDA 367
            +   +S + L+NN I             +  I+L  N L+                   
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE------------------ 471

Query: 368 VAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGY--LTR 425
                            P  S   + E  +    ++ IDL  NKLT  +        L  
Sbjct: 472 ----------------IPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPY 514

Query: 426 IRALNLSHNNLTGTIPITFSNLKQIESLDLSYNL------LHGKIPQLIV-LTTLAVFRV 478
           +  ++LS+N+ +   P    N   ++   +             + P+ I    +L   ++
Sbjct: 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 479 AYNNLSGKIPD 489
             N++   + +
Sbjct: 574 GSNDIRK-VNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  152 bits (386), Expect = 2e-39
 Identities = 54/429 (12%), Positives = 129/429 (30%), Gaps = 62/429 (14%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSG----SLPLCLTNLTSLQVLDV 136
             +  L++     +   P  + +L  L  L + ++          P  ++   S +    
Sbjct: 81  GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 137 SYNQLTESI-SSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESH 195
                 ++     P    + + +  ++++  Q  I         K               
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS-SRITLKDTQIGQ--------L 191

Query: 196 YNSLT--PKF-----QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLM 248
            N++T   K      +L    +                   +N +  +            
Sbjct: 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEA-----WENENSEYAQQYKTEDL--- 243

Query: 249 PIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID 308
               L+ L  ++V N      +P  +   LP +  +N++ N        +          
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAP 302

Query: 309 RLPQISYLLLANNYI-EGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVN-TALSEGYYD 366
              +I  + +  N +    +   L ++K++ +++  +N L G +P    +   L+     
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN-- 359

Query: 367 AVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIP--TQIGYLT 424
                        L+Y      P            +  +  + NKL   IP       ++
Sbjct: 360 -------------LAYNQITEIP---ANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402

Query: 425 RIRALNLSHNNLTG-------TIPITFSNLKQIESLDLSYNLLHGKIPQLI-VLTTLAVF 476
            + A++ S+N +          +  T      + S++LS N +     +L    + L+  
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 477 RVAYNNLSG 485
            +  N L+ 
Sbjct: 463 NLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  128 bits (323), Expect = 2e-31
 Identities = 60/364 (16%), Positives = 118/364 (32%), Gaps = 48/364 (13%)

Query: 5   KNLEHLVMDQ---MLVEVNTSFLQIVSEL--MASLRLLSLSYSRLNKNTILDQGFCQLVH 59
             ++ + +     +  E      Q +++      ++++ + Y+ L    + +    ++  
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV-ETSLQKMKK 331

Query: 60  LQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLS 118
           L  L    N L   L        L  LN+A N++T   P   C     +  L   +N L 
Sbjct: 332 LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390

Query: 119 GSLP--LCLTNLTSLQVLDVSYNQLTESISSSP------LMLLTSIEELILSNNHFQ--I 168
             +P      +++ +  +D SYN++      +            ++  + LSNN      
Sbjct: 391 -YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 169 PISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHD 228
                  S LS +        L      N       LT I  +         +   + + 
Sbjct: 450 KELFSTGSPLSSI-------NL----MGN------MLTEIPKNSL---KDENENFKNTYL 489

Query: 229 LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSR 288
           L + DL    L+    +       L  L  +D+S N F    P +       L    +  
Sbjct: 490 LTSIDLRFNKLTKLSDD--FRATTLPYLVGIDLSYNSFSK-FPTQPLN-SSTLKGFGIRN 545

Query: 289 NAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS 348
               D   NR     P  I   P ++ L + +N I   +  ++     + ++D+  N   
Sbjct: 546 Q--RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNI 600

Query: 349 GHIP 352
               
Sbjct: 601 SIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  124 bits (314), Expect = 3e-30
 Identities = 47/381 (12%), Positives = 101/381 (26%), Gaps = 89/381 (23%)

Query: 125 LTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAF 184
           L +   +  L +     +  +  + +  LT +E L L ++  ++   L     +S     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISAN--- 132

Query: 185 NGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFP 244
              +  E +        K  +       + D             L    ++         
Sbjct: 133 ---MSDEQKQKMRMHYQKTFVDYDPREDFSD-------------LIKDCINSDPQQKSIK 176

Query: 245 NWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIP 304
                     K   +   +N     +   +   L  L            +  +       
Sbjct: 177 KS---SRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQF--------YMGNSPFVAENI 223

Query: 305 NWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGY 364
                                    +   LK++  +++ +      +P  L         
Sbjct: 224 -----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA------- 271

Query: 365 YDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLT--------GEI 416
                                             L  M  I+++CN+           + 
Sbjct: 272 ----------------------------------LPEMQLINVACNRGISGEQLKDDWQA 297

Query: 417 PTQIGYLTRIRALNLSHNNL-TGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAV 475
                   +I+ + + +NNL T  +  +   +K++  L+  YN L GK+P       LA 
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLAS 357

Query: 476 FRVAYNNLSGKIPDRVAQFST 496
             +AYN ++  IP     F+ 
Sbjct: 358 LNLAYNQITE-IPANFCGFTE 377

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.2 bits (193), Expect = 3e-15
 Identities = 19/217 (8%), Positives = 53/217 (24%), Gaps = 32/217 (14%)

Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIP 352
           +   +         ++   +++ L L      G +P  + QL E+ ++ L  +    +  
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 353 FCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL 412
                   +      ++                +  P       +  + +    ++ +  
Sbjct: 123 LFGPKGISAN-----MSDEQKQKMRMHYQKTFVDYDPR------EDFSDLIKDCINSDPQ 171

Query: 413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIV--- 469
              I        +   +    NN+T  +      L ++    +  +    +         
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230

Query: 470 -----------------LTTLAVFRVAYNNLSGKIPD 489
                            L  L    V       K+P 
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 7/119 (5%)

Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP 465
           +   +    +    +    R+  L+L     +G +P     L ++E L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 466 QLIV-----LTTLAVFRVAYNNLSGKIPDRVA--QFSTFEEDSYEGNPFLYGQPLSKSC 517
                      +    +    +      D      FS   +D    +P       S   
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 13/129 (10%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDS--LLGAW-----QTTSL 83
           +  L  + LSY+     +           L+   IR+         L  W        SL
Sbjct: 512 LPYLVGIDLSYNSF---SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 84  QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE 143
            +L + SN +       +     +  L I +N         +       +  + Y++  +
Sbjct: 569 TQLQIGSNDIR-KVNEKITPN--ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625

Query: 144 SISSSPLML 152
                 L +
Sbjct: 626 IRGCDALDI 634

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  175 bits (446), Expect = 9e-48
 Identities = 82/501 (16%), Positives = 162/501 (32%), Gaps = 83/501 (16%)

Query: 25  QIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSL 83
           +I   L  S   L  S++ L   TI +  F +L++L  L +    +       +Q+   L
Sbjct: 26  EIPGTLPNSTECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83

Query: 84  QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE 143
             L + +N L       L     L+ L+     +S    + L N  +L+ L +  N ++ 
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS- 142

Query: 144 SISSSPLMLLTSIEELILSNNHFQ--IPISLEPLSNLSKLKAFNGEIYLETESHYNSLT- 200
           SI          ++ L   NN         +  L   + L      + L    + N +  
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-----SLNL----NGNDIAG 193

Query: 201 ------PKFQLTSISLSGYRDDGTFPKFLYHQH--DLKNADLSHLNLSGEFPNWLMPIHC 252
                       S++  G ++     K L +     L       ++   +    +    C
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLC 252

Query: 253 LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN---------------DLSYN 297
              + ++++  ++F   I         GL  L+L+    +                LS N
Sbjct: 253 EMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN 311

Query: 298 RLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQ-LCQLKEVRLIDLSHNNLSGHIPFCLV 356
           + +          P +++L +  N    E+    L  L+ +R +DLSH+++      C  
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET-SDCC-- 368

Query: 357 NTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEI 416
                                                  ++ L+ +  ++LS N+     
Sbjct: 369 ------------------------------------NLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 417 PTQIGYLTRIRALNLSHNNLTGTIP-ITFSNLKQIESLDLSYNLLHGKIPQLIV-LTTLA 474
                   ++  L+L+   L        F NL  ++ L+LS++LL     QL   L  L 
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452

Query: 475 VFRVAYNNLSGKIPDRVAQFS 495
              +  N+       +     
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  147 bits (373), Expect = 7e-38
 Identities = 78/468 (16%), Positives = 152/468 (32%), Gaps = 85/468 (18%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
               +   +L ++  L   + + ++  +   A  + L+   ++             +  L
Sbjct: 173 MSSLQQATNLSLN--LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 61  QELYIRDNDLRD---SLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDL 117
                 D D  D   ++       S++ +N+  +               L+EL +    L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 118 SGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSN 177
           S  LP  L  L++L+ L +S N+   ++         S+  L +  N  ++ +    L N
Sbjct: 291 S-ELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 178 LSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHL 237
           L  L+    E+ L     ++       + +               L +   L++ +LS+ 
Sbjct: 349 LENLR----ELDLS----HD------DIETSDCC--------NLQLRNLSHLQSLNLSYN 386

Query: 238 NLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYN 297
                            +L  LD++    +          L  L  L        +LS++
Sbjct: 387 EPLSLKTEAFK---ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL--------NLSHS 435

Query: 298 RLQGSIPNWIDRLPQISYLLLANNYIEGEI---PAQLCQLKEVRLIDLSHNNLSGHIPFC 354
            L  S     D LP + +L L  N+           L  L  + ++ LS  +LS      
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 355 LVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG 414
             +                                         L  M+ +DLS N+LT 
Sbjct: 496 FTS-----------------------------------------LKMMNHVDLSHNRLTS 514

Query: 415 EIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG 462
                + +L  I  LNL+ N+++  +P     L Q  +++L  N L  
Sbjct: 515 SSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  145 bits (367), Expect = 4e-37
 Identities = 85/542 (15%), Positives = 158/542 (29%), Gaps = 94/542 (17%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSEL---MASLRLLSLSYSRLNKNTILDQGFCQL 57
           F     L+ LV+           + +         +L+ L    + ++  +I        
Sbjct: 77  FQSQHRLDTLVLT------ANPLIFMAETALSGPKALKHLFFIQTGIS--SIDFIPLHNQ 128

Query: 58  VHLQELYIRDNDLRDSLLGA-WQTTSLQELNVASNKLTRNFPLGLCELVLLRELYID--N 114
             L+ LY+  N +    L   + T  L+ L+  +N +       +  L     L ++   
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 115 NDLSGSLPLCLTNLTSLQVLDVSYNQLT-ESISSSPLMLLTSIEELILSNNHFQ--IPIS 171
           ND++  +     +    Q L+    Q             + S+      +   +   P  
Sbjct: 189 NDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 172 LEPLSNLSKLKAFNGEIYLE----TESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQH 227
            E L  +S        I L+         N+      L  + L+        P  L    
Sbjct: 248 FEGLCEMSVE-----SINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLS 301

Query: 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLS 287
            LK   LS                    L  L +  N  +  +       L  L  L+LS
Sbjct: 302 TLKKLVLSANKFENLCQISASN---FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 288 RNAFN------------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEG-EIP 328
            +                     +LSYN             PQ+  L LA   ++  +  
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 329 AQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGS 388
           +    L  +++++LSH+ L                                         
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDG------------------------------- 447

Query: 389 PMGKEETVQILTSMSGIDLSCNKLTGEIPTQIG---YLTRIRALNLSHNNLTGTIPITFS 445
                     L ++  ++L  N        +      L R+  L LS  +L+      F+
Sbjct: 448 ----------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 446 NLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGN 505
           +LK +  +DLS+N L     + +         +A N++S  +P  +   S     +   N
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 506 PF 507
           P 
Sbjct: 558 PL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  116 bits (293), Expect = 1e-27
 Identities = 59/411 (14%), Positives = 106/411 (25%), Gaps = 87/411 (21%)

Query: 84  QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE 143
           +  N  +  L    P  L        L    N L        + L +L  LD++  Q+  
Sbjct: 15  KTYNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY- 70

Query: 144 SISSSPLMLLTSIEELILSNNHFQ--IPISLEPLSNLSKLKAFNGEIYLETESHYNSLTP 201
            I          ++ L+L+ N        +L     L  L                    
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL-------------------- 110

Query: 202 KFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDV 261
                                                +S        P+H  + L +L +
Sbjct: 111 -------------------------------FFIQTGISSIDFI---PLHNQKTLESLYL 136

Query: 262 SNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQIS--YLLLA 319
            +N     I +  G     L  L+   NA + LS           +  L Q +   L L 
Sbjct: 137 GSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLS--------KEDMSSLQQATNLSLNLN 187

Query: 320 NNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPA 379
            N I   I          + ++         I   L N+ +                   
Sbjct: 188 GNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS-------LWLGTFEDMD 239

Query: 380 LSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT 439
               SP       E +V+ +      +L  +             + ++ L+L+  +L+  
Sbjct: 240 DEDISPAVFEGLCEMSVESI------NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292

Query: 440 IPITFSNLKQIESLDLSYNLLHGKIPQLIV-LTTLAVFRVAYNNLSGKIPD 489
           +P     L  ++ L LS N              +L    +  N    ++  
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.6 bits (215), Expect = 5e-18
 Identities = 34/268 (12%), Positives = 70/268 (26%), Gaps = 58/268 (21%)

Query: 224 YHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMH 283
             +   K  +  +L L+       +P         L+ S N     I     + L  L  
Sbjct: 9   IEKEVNKTYNCENLGLNE------IPGTLPNSTECLEFSFNVLP-TIQNTTFSRLINLTF 61

Query: 284 LNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLS 343
           L        DL+  ++     +      ++  L+L  N +       L   K ++ +   
Sbjct: 62  L--------DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 344 HNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMS 403
              +S      L N                                           ++ 
Sbjct: 114 QTGISSIDFIPLHN-----------------------------------------QKTLE 132

Query: 404 GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLK--QIESLDLSYNLLH 461
            + L  N ++     +     +++ L+  +N +        S+L+     SL+L+ N + 
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 462 GKIPQLIVLTTLAVFRVAYNNLSGKIPD 489
           G  P                     I  
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.1 bits (198), Expect = 6e-16
 Identities = 31/261 (11%), Positives = 68/261 (26%), Gaps = 57/261 (21%)

Query: 251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL 310
              +   T +  N      IP  +         L        + S+N L         RL
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTL---PNSTECL--------EFSFNVLPTIQNTTFSRL 56

Query: 311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAP 370
             +++L L    I             +  + L+ N L       L               
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG------------- 103

Query: 371 TWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALN 430
                                         ++  +      ++      +     + +L 
Sbjct: 104 ----------------------------PKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 431 LSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIV---LTTLAVFRVAYNNLSGKI 487
           L  N+++          ++++ LD   N +H    + +      T     +  N+++G I
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-I 194

Query: 488 PDRVAQFSTFEEDSYEGNPFL 508
                  + F+  ++ G   L
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNL 215

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  174 bits (442), Expect = 4e-47
 Identities = 86/475 (18%), Positives = 159/475 (33%), Gaps = 60/475 (12%)

Query: 22  SFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT- 80
           +F +I   L  S + L LS++ L    +    F     LQ L +   +++    GA+Q+ 
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
           + L  L +  N +          L  L++L     +L+      + +L +L+ L+V++N 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
           +           LT++E L LS+N  Q       L  L ++   N  + L      N + 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDL----SLNPMN 190

Query: 201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLD 260
                                  + +  L    L +   S         I  L  L    
Sbjct: 191 -----------------FIQPGAFKEIRLHKLTLRNNFDSLNVMKTC--IQGLAGLEVHR 231

Query: 261 VSNNFFQGHIPVE--IGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLL 318
           +    F+    +E    + L GL +L +       L  +     I +  + L  +S   L
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL--DYYLDDIIDLFNCLTNVSSFSL 289

Query: 319 ANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAP 378
            +  IE             + ++L +          L +                     
Sbjct: 290 VSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKS--------------------- 326

Query: 379 ALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLT--GEIPTQIGYLTRIRALNLSHNNL 436
            L   +   +  G   +   L S+  +DLS N L+  G         T ++ L+LS N +
Sbjct: 327 -LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 437 TGTIPITFSNLKQIESLDLSYNLLHGKIPQLIV--LTTLAVFRVAYNNLSGKIPD 489
             T+   F  L+Q+E LD  ++ L       +   L  L    +++ +       
Sbjct: 386 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  171 bits (435), Expect = 3e-46
 Identities = 74/476 (15%), Positives = 146/476 (30%), Gaps = 81/476 (17%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQ----ELYIRDNDLRDSLLGAWQTTSLQEL 86
           + +L  L LS +++   +I       L  +      L +  N +     GA++   L +L
Sbjct: 148 LTNLEHLDLSSNKIQ--SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 87  NVASNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPL------CLTNLTSLQVLDVSYN 139
            + +N  + N      + L  L    +   +      L       L  L +L + +    
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 140 QLTESISSSPLML--LTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYN 197
            L   +     +   LT++    L +   +             L+  N          + 
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN--------CKFG 317

Query: 198 SLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSH--LNLSGEFPNWLMPIHCLQK 255
                   +   L+   + G           L+  DLS   L+  G              
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD---FGTTS 374

Query: 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI-DRLPQIS 314
           L  LD+S N         +G  L  L HL        D  ++ L+      +   L  + 
Sbjct: 375 LKYLDLSFNGVITMSSNFLG--LEQLEHL--------DFQHSNLKQMSEFSVFLSLRNLI 424

Query: 315 YLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDH 374
           YL +++ +           L  + ++ ++ N+   +                        
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL---------------------- 462

Query: 375 ASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHN 434
                              +    L +++ +DLS  +L    PT    L+ ++ LN+SHN
Sbjct: 463 ------------------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

Query: 435 NLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLI--VLTTLAVFRVAYNNLSGKIP 488
           N        +  L  ++ LD S N +     Q +    ++LA   +  N+ +    
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  161 bits (410), Expect = 7e-43
 Identities = 90/483 (18%), Positives = 159/483 (32%), Gaps = 73/483 (15%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVASN 91
            L++L LS   +    I D  +  L HL  L +  N ++   LGA    +SLQ+L     
Sbjct: 53  ELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 92  KLTRNFPLGLCELVLLRELYIDNNDL-SGSLPLCLTNLTSLQVLDVSYNQLTESISSS-- 148
            L       +  L  L+EL + +N + S  LP   +NLT+L+ LD+S N++     +   
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 149 PLMLLTSIE-ELILSNNHF-QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLT 206
            L  +  +   L LS N    I         L KL   N    L             ++ 
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 207 SISLSGYRDDGTFPKF----LYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVS 262
            + L  +R++G   KF    L    +L   +     L     + +   +CL  +++  + 
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 263 NNFFQGHIPVEIGTYLPGLMHLNLSRNAFN-----------DLSYNRLQGSIPNWIDRLP 311
           +   +        +Y  G  HL L    F             L++   +G        LP
Sbjct: 291 SVTIERVKD---FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347

Query: 312 QISYLLLANNYI--EGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVA 369
            + +L L+ N +  +G           ++ +DLS N +   +    +             
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLG------------ 394

Query: 370 PTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRA 428
                                        L  +  +D   + L       +   L  +  
Sbjct: 395 -----------------------------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 429 LNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP--QLIVLTTLAVFRVAYNNLSGK 486
           L++SH +        F+ L  +E L ++ N             L  L    ++   L   
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 487 IPD 489
            P 
Sbjct: 486 SPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  156 bits (396), Expect = 6e-41
 Identities = 79/539 (14%), Positives = 166/539 (30%), Gaps = 124/539 (23%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSEL---MASLRLLSLSYSRLNKNTILDQGFCQL 57
           +    +L  L++             +       ++SL+ L    + L    + +     L
Sbjct: 72  YQSLSHLSTLILT------GNPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIGHL 123

Query: 58  VHLQELYIRDNDLRDSLLGA--WQTTSLQELNVASNKLTRNFPLGLCEL----VLLRELY 111
             L+EL +  N ++   L       T+L+ L+++SNK+   +   L  L    +L   L 
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 112 IDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLT--SIEELILSNNHFQIP 169
           +  N ++   P     +  L  L +  N  + ++  + +  L    +  L+L     +  
Sbjct: 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 170 ISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDL 229
           +     S L  L     E              +F+L  +          F        ++
Sbjct: 243 LEKFDKSALEGLCNLTIE--------------EFRLAYLDYYLDDIIDLFNCL----TNV 284

Query: 230 KNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTY------------ 277
            +  L  + +       +           L++ N  F     +++ +             
Sbjct: 285 SSFSLVSVTIER-----VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339

Query: 278 ------LPGLMHLNLSRNAFN------------------DLSYNRLQGSIPNWIDRLPQI 313
                 LP L  L+LSRN  +                  DLS+N +   + +    L Q+
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQL 398

Query: 314 SYLLLANNYIEGEIPAQ-LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTW 372
            +L   ++ ++          L+ +  +D+SH +                          
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------------- 443

Query: 373 DHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNL 431
                                     L+S+  + ++ N         I   L  +  L+L
Sbjct: 444 --------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 432 SHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIV-LTTLAVFRVAYNNLSGKIPD 489
           S   L    P  F++L  ++ L++S+N            L +L V   + N++      
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  138 bits (349), Expect = 9e-35
 Identities = 80/497 (16%), Positives = 157/497 (31%), Gaps = 87/497 (17%)

Query: 1   FHEFKNLEHLVMDQ-MLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVH 59
           F    NLEHL +    +  +  + L+++ ++      L LS    N    +  G  + + 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL---NPMNFIQPGAFKEIR 201

Query: 60  LQELYIRDNDLRDSLLGAWQT--TSLQELNVASNKLTRNFPL---------GLCELVLLR 108
           L +L +R+N    +++         L+   +   +      L         GLC L +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 109 ELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI 168
                 +     +      LT++    +    +      S        + L L N  F  
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQ 318

Query: 169 PISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHD 228
             +L+  S        N      +E    SL    +   +S +G    G   +  +    
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL----EFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 229 LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSR 288
           LK  DLS   +     N+L     L++L  LD  ++  +      +   L  L++L++S 
Sbjct: 375 LKYLDLSFNGVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 289 NAFN----------------DLSYNRLQGSI-PNWIDRLPQISYLLLANNYIEGEIPAQL 331
                                ++ N  Q +  P+    L  +++L L+   +E   P   
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 332 CQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMG 391
             L  ++++++SHNN      F                                      
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKC---------------------------------- 516

Query: 392 KEETVQILTSMSGIDLSCNKLTGEIPTQIGYL-TRIRALNLSHNNLTGTIPIT--FSNLK 448
                  L S+  +D S N +      ++ +  + +  LNL+ N+   T         +K
Sbjct: 517 -------LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569

Query: 449 QIESLDLSYNLLHGKIP 465
               L +    +    P
Sbjct: 570 DQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  136 bits (345), Expect = 3e-34
 Identities = 72/464 (15%), Positives = 136/464 (29%), Gaps = 92/464 (19%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQG----FCQ 56
                 LE   +         +  +     +  L  L++   RL             F  
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 57  LVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNND 116
           L ++    +    +      ++     Q L + + K           L L     +    
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-----QFPTLKLKSLKRLTFTS 334

Query: 117 LSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLML-LTSIEELILSNNHFQ-IPISLEP 174
             G       +L SL+ LD+S N L+     S      TS++ L LS N    +  +   
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 175 LSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADL 234
           L  L  L              +++L           S                +L   D+
Sbjct: 395 LEQLEHL-------DF----QHSNLK-----QMSEFS----------VFLSLRNLIYLDI 428

Query: 235 SHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDL 294
           SH +    F       + L  L  L ++ N FQ +   +I T L  L  L        DL
Sbjct: 429 SHTHTRVAFNGIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL--------DL 477

Query: 295 SYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFC 354
           S  +L+   P   + L  +  L +++N            L  ++++D S N++       
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

Query: 355 LVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG 414
           L +                                          +S++ ++L+ N    
Sbjct: 538 LQH----------------------------------------FPSSLAFLNLTQNDFAC 557

Query: 415 EIPTQ--IGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLS 456
               Q  + ++   R L +    +    P     +  + SL+++
Sbjct: 558 TCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  153 bits (389), Expect = 4e-40
 Identities = 88/521 (16%), Positives = 181/521 (34%), Gaps = 75/521 (14%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSEL---MASLRLLSLSYSRLNKNTILDQGFCQL 57
           +H   +L +L++                     + SL  L    ++L    +      QL
Sbjct: 76  WHGLHHLSNLILT------GNPIQSFSPGSFSGLTSLENLVAVETKLAS--LESFPIGQL 127

Query: 58  VHLQELYIRDNDLRDSLLGAW--QTTSLQELNVASNKLTRNFPLGLCEL----VLLRELY 111
           + L++L +  N +    L A+    T+L  ++++ N +       L  L     +   L 
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 112 IDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ--IP 169
           +  N +          +  L  L +  N  + +I  + L  L  +    L    F+    
Sbjct: 188 MSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 170 ISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKF-----QLTSISLSGYRDDGTFPKFLY 224
           + +   S +  L     + +  T ++  S           ++++SL+G      + + + 
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS--IKYLEDVP 304

Query: 225 HQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHL 284
                ++  +    L         P   L  L +L ++ N             LP L +L
Sbjct: 305 KHFKWQSLSIIRCQLKQ------FPTLDLPFLKSLTLTMNKGSISFK---KVALPSLSYL 355

Query: 285 NLSRNAFN------------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGE 326
           +LSRNA +                  DLS+N     +      L ++ +L   ++ ++  
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRV 414

Query: 327 IPAQ-LCQLKEVRLIDLSHNNLSGHIPFCLVN-TALSEGYYDAVAPTWDHASAPALSYFS 384
                   L+++  +D+S+ N         +  T+L+                  L    
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT-----------------LKMAG 457

Query: 385 PNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITF 444
            +             T+++ +DLS  +L          L R++ LN+SHNNL       +
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 445 SNLKQIESLDLSYNLLHGKIPQLI-VLTTLAVFRVAYNNLS 484
           + L  + +LD S+N +      L     +LA F +  N+++
Sbjct: 518 NQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  148 bits (375), Expect = 4e-38
 Identities = 79/469 (16%), Positives = 147/469 (31%), Gaps = 82/469 (17%)

Query: 25  QIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSL 83
           ++  ++ +S + + LS++ L    +    F     LQ L +   ++      AW     L
Sbjct: 25  KVPDDIPSSTKNIDLSFNPLK--ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82

Query: 84  QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE 143
             L +  N +    P     L  L  L      L+      +  L +L+ L+V++N +  
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 144 SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKF 203
               +    LT++  + LS N+ Q  I++  L  L +    N  + +      N      
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDM----SLN------ 191

Query: 204 QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSN 263
            +  I       D  F                                   KL  L +  
Sbjct: 192 PIDFI------QDQAF--------------------------------QGIKLHELTLRG 213

Query: 264 NFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISY--LLLANN 321
           NF   +I       L GL    L    F D     L+   P+ ++ L  ++     L   
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDE--RNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 322 YIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALS 381
               +   +   L  V  + L+  ++  ++     +                      L 
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSI----------IRCQLK 320

Query: 382 YFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP 441
            F               L  +  + L+ NK +  I  +   L  +  L+LS N L+ +  
Sbjct: 321 QFPTLD-----------LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGC 367

Query: 442 ITFSNLK--QIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIP 488
            ++S+L    +  LDLS+N         + L  L      ++ L     
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (356), Expect = 9e-36
 Identities = 85/487 (17%), Positives = 150/487 (30%), Gaps = 82/487 (16%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVASN 91
            L+ L LS   +    I D+ +  L HL  L +  N ++    G+    TSL+ L     
Sbjct: 57  ELQWLDLSRCEIET--IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 92  KLTRNFPLGLCELVLLRELYIDNNDLSG-SLPLCLTNLTSLQVLDVSYNQLTESISSSPL 150
           KL       + +L+ L++L + +N +    LP   +NLT+L  +D+SYN +  +I+ + L
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDL 173

Query: 151 MLLT----SIEELILSNNHF-QIPISLEPLSNLSKLK-AFNGEIYLETESHYNSLT--PK 202
             L         L +S N    I         L +L    N       ++   +L     
Sbjct: 174 QFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 203 FQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMP--IHCLQKLATLD 260
            +L        R+   F   +     L +  +    L+            HCL  ++ + 
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEG--LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 261 VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN-------------DLSYNRLQGSIPNWI 307
           ++    +    +E          L++ R                  L+ N+   SI    
Sbjct: 292 LAGVSIKY---LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG--SISFKK 346

Query: 308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRL--IDLSHNNLSGHIPFCLVNTALSEGYY 365
             LP +SYL L+ N +          L    L  +DLS N                    
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM--------------- 391

Query: 366 DAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQ-IGYLT 424
                                            L  +  +D   + L           L 
Sbjct: 392 ---------------------------SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 425 RIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ--LIVLTTLAVFRVAYNN 482
           ++  L++S+ N        F  L  + +L ++ N              T L    ++   
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 483 LSGKIPD 489
           L      
Sbjct: 485 LEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (282), Expect = 3e-26
 Identities = 64/412 (15%), Positives = 124/412 (30%), Gaps = 78/412 (18%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
           +S + ++++ N L             L+ L +   ++          L  L  L ++ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQ--IPISLEPLSNLSKLKAFNGEIYLETESHYNS 198
           +  S S      LTS+E L+             +  L  L KL                 
Sbjct: 92  IQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL----------------- 133

Query: 199 LTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLAT 258
                                        ++ +  +    L   F N       L  L  
Sbjct: 134 -----------------------------NVAHNFIHSCKLPAYFSN-------LTNLVH 157

Query: 259 LDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLL 318
           +D+S N+ Q  I V    +L     +NLS     D+S N +   I +   +  ++  L L
Sbjct: 158 VDLSYNYIQ-TITVNDLQFLRENPQVNLS----LDMSLNPID-FIQDQAFQGIKLHELTL 211

Query: 319 ANNYIEGEIPAQLCQ-LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASA 377
             N+    I     Q L  + +  L            +   ++ EG  D     +     
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR---- 267

Query: 378 PALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT 437
                 +              L ++S + L+   +       +    + ++L++    L 
Sbjct: 268 -----LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK 320

Query: 438 GTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPD 489
                   +L  ++SL L+ N       + + L +L+   ++ N LS     
Sbjct: 321 Q---FPTLDLPFLKSLTLTMNKGSI-SFKKVALPSLSYLDLSRNALSFSGCC 368

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.7 bits (236), Expect = 1e-20
 Identities = 42/255 (16%), Positives = 82/255 (32%), Gaps = 16/255 (6%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
             +   L+ L +       N   +      + SL  L LS + L+ +            L
Sbjct: 324 TLDLPFLKSLTLTM-----NKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 61  QELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLG-LCELVLLRELYIDNNDLSG 119
           + L +  N              LQ L+   + L R         L  L  L I   +   
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 120 SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ--IPISLEPLSN 177
                   LTSL  L ++ N   ++  S+     T++  L LS    +       + L  
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 178 LSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHL 237
           L  L   +  +        +     + L+++  S  R + +     +    L   +L++ 
Sbjct: 499 LQLLNMSHNNL---LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 238 NLS-----GEFPNWL 247
           +++      +F  W+
Sbjct: 556 SVACICEHQKFLQWV 570

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.8 bits (205), Expect = 9e-17
 Identities = 40/263 (15%), Positives = 76/263 (28%), Gaps = 61/263 (23%)

Query: 232 ADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF 291
                  LS + P+ +           +D+S N  +  +     +    L  L       
Sbjct: 16  YQCMDQKLS-KVPDDIPS-----STKNIDLSFNPLK-ILKSYSFSNFSELQWL------- 61

Query: 292 NDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHI 351
            DLS   ++         L  +S L+L  N I+   P     L  +  +      L+   
Sbjct: 62  -DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 352 PFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNK 411
            F +                                           L ++  ++++ N 
Sbjct: 121 SFPIGQ-----------------------------------------LITLKKLNVAHNF 139

Query: 412 LTG-EIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQ----IESLDLSYNLLHGKIPQ 466
           +   ++P     LT +  ++LS+N +          L++      SLD+S N +     Q
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199

Query: 467 LIVLTTLAVFRVAYNNLSGKIPD 489
                 L    +  N  S  I  
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMK 222

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 56/375 (14%), Positives = 100/375 (26%), Gaps = 114/375 (30%)

Query: 119 GSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ--IPISLEPLS 176
           GSL  C+  + ++        +L+  +   P  + +S + + LS N  +     S    S
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KV---PDDIPSSTKNIDLSFNPLKILKSYSFSNFS 56

Query: 177 NLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSH 236
            L  L                                                   DLS 
Sbjct: 57  ELQWL---------------------------------------------------DLSR 65

Query: 237 LNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSY 296
             +           H L  L+ L ++ N  Q        + L  L +L            
Sbjct: 66  CEIETIEDKAW---HGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENL--------VAVE 113

Query: 297 NRLQGSIPNWIDRLPQISYLLLANNYIEG-EIPAQLCQLKEVRLIDLSHNNLSGHIPFCL 355
            +L       I +L  +  L +A+N+I   ++PA    L  +  +DLS+N +       L
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 356 VNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE 415
                                                    +       +D+S N +   
Sbjct: 174 QFLR-------------------------------------ENPQVNLSLDMSLNPID-F 195

Query: 416 IPTQIGYLTRIRALNLSHNNLTGTIP-ITFSNLKQIESLDLSYNLLHG----KIPQLIVL 470
           I  Q     ++  L L  N  +  I      NL  +    L           +I +  ++
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 471 TTLAVFRVAYNNLSG 485
             L    +    L+ 
Sbjct: 256 EGLCDVTIDEFRLTY 270

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  148 bits (374), Expect = 1e-37
 Identities = 116/632 (18%), Positives = 203/632 (32%), Gaps = 84/632 (13%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSEL---MASLRLLSLSYSRLNKNTILDQGFCQL 57
           F   + L+ L +         + L I  E    + +LR+L L  S++    +    F  L
Sbjct: 44  FPFLEQLQLLELGS-----QYTPLTIDKEAFRNLPNLRILDLGSSKIY--FLHPDAFQGL 96

Query: 58  VHLQELYIRDNDLRDSLLGA---WQTTSLQELNVASNKLTR-NFPLGLCELVLLRELYID 113
            HL EL +    L D++L         +L  L+++ N++          +L  L+ +   
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 114 NNDLSGSLPLCLTNLT--SLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-IPI 170
           +N +       L  L   +L    ++ N L   +S      +     ++L          
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 171 SLEPLSNLSKLKAFNGEIYLETESHYNSLTPKF-QLTSISLSGYRDDGTFPKFLYHQHDL 229
           +++   N S   + +    L    H       F  +         D  TF         +
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP------DQNTFAGLARSS--V 268

Query: 230 KNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN 289
           ++ DLSH  +             L+ L  L+++ N     I  E    L  L  LNLS N
Sbjct: 269 RHLDLSHGFVFSLNSRVF---ETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYN 324

Query: 290 AFN----------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ 333
                              DL  N +          L ++  L L +N +       +  
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHF 379

Query: 334 LKEVRLIDLSHNNLSG--HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG---S 388
           +  +  I LS N L     I        LSE   + +   +     P L     N    S
Sbjct: 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

Query: 389 PMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-----GYLTRIRALNLSHNNLTGTIPIT 443
               ++T     S+  + L  N L     T++       L+ ++ L L+HN L    P  
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499

Query: 444 FSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYE 503
           FS+L  +  L L+ N L   +    +   L +  ++ N L    PD    F +       
Sbjct: 500 FSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPD---VFVSLSVLDIT 555

Query: 504 GNPFLYGQPLS--------KSCDDNGLTTVTTEAYTENEEGGSLIDMD-----------S 544
            N F+    LS         +    G        Y ++  G SL  +            S
Sbjct: 556 HNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKS 615

Query: 545 FLITFTVSYGIAIIGIIGVLYVNPYWRRRWFY 576
              +  +   + +   +  +     +R   F 
Sbjct: 616 LKFSLFIVCTVTLTLFLMTILTVTKFRGFCFI 647

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  116 bits (292), Expect = 3e-27
 Identities = 66/427 (15%), Positives = 143/427 (33%), Gaps = 79/427 (18%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSL-PLCLTNLTSLQVLDVSYN 139
            + + L ++ N +          L  L+ L + +     ++      NL +L++LD+  +
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 140 QLTESISSSPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLK----AFNGEIYLETES 194
           ++   +       L  + EL L         +      NL  L     + N    L    
Sbjct: 84  KIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 195 HYNSLTPKFQLTSISLSGYR----DDGTFPKFLYHQHDLKNADLSHLNLSG------EFP 244
            +  L     L SI  S  +     +            L+   LS  +L+          
Sbjct: 143 SFGKLN---SLKSIDFSSNQIFLVCEHEL-------EPLQGKTLSFFSLAANSLYSRVSV 192

Query: 245 NWLMPIHCLQ--KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN---DLSYNRL 299
           +W   ++  +   L  LDVS N +   I       +      +L            ++ +
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 300 QGSIPNWIDRLPQIS--YLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVN 357
           +    N    L + S  +L L++ ++          LK++++++L++N ++  I      
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIA----- 306

Query: 358 TALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIP 417
                                              +E    L ++  ++LS N L     
Sbjct: 307 -----------------------------------DEAFYGLDNLQVLNLSYNLLGELYS 331

Query: 418 TQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFR 477
           +    L ++  ++L  N++      TF  L+++++LDL  N L      +  + ++    
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----TIHFIPSIPDIF 387

Query: 478 VAYNNLS 484
           ++ N L 
Sbjct: 388 LSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (267), Expect = 3e-24
 Identities = 65/363 (17%), Positives = 126/363 (34%), Gaps = 38/363 (10%)

Query: 127 NLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNG 186
            L + + L +S+N +  ++++S    L  ++ L L + +  + I  E   NL  L+    
Sbjct: 22  VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR---- 76

Query: 187 EIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNW 246
            + L      +      ++  +           P        L    L    LS      
Sbjct: 77  ILDL----GSS------KIYFLH----------PDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 247 LMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW 306
                 L+ L  LD+S N  +          L  L  ++ S N    +  + L+      
Sbjct: 117 G-YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL---- 171

Query: 307 IDRLPQISYLLLANNYIEGEIPAQLCQLKEV-RLIDLSHNNLSGHIPFCLVNTALSEGYY 365
             +   +S+  LA N +   +     +     R + L   ++SG+     +    S    
Sbjct: 172 --QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229

Query: 366 DAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSG--IDLSCNKLTGEIPTQIGYL 423
            + A +   A     + F  +      + T   L   S   +DLS   +          L
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289

Query: 424 TRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ--LIVLTTLAVFRVAYN 481
             ++ LNL++N +       F  L  ++ L+LSYNLL  ++       L  +A   +  N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKN 348

Query: 482 NLS 484
           +++
Sbjct: 349 HIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.3 bits (167), Expect = 4e-12
 Identities = 45/314 (14%), Positives = 88/314 (28%), Gaps = 69/314 (21%)

Query: 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNL 286
            D + A     NL+            L     L +S N+ +  +      +L  L  L  
Sbjct: 4   FDGRIAFYRFCNLTQVPQV-------LNTTERLLLSFNYIR-TVTASSFPFLEQLQLL-- 53

Query: 287 SRNAFNDLSYNRLQGSI-PNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
                 +L       +I       LP +  L L ++ I    P     L  +  + L   
Sbjct: 54  ------ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107

Query: 346 NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
            LS                                         + K+   + L +++ +
Sbjct: 108 GLS---------------------------------------DAVLKDGYFRNLKALTRL 128

Query: 406 DLSCNKLTG-EIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQ--IESLDLSYNLLHG 462
           DLS N++    +    G L  +++++ S N +          L+   +    L+ N L+ 
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188

Query: 463 KIP-------QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSK 515
           ++               L +  V+ N  +  I      FS     S   +  L    +  
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG---NFSNAISKSQAFSLILAHHIMGA 245

Query: 516 SCDDNGLTTVTTEA 529
               + +       
Sbjct: 246 GFGFHNIKDPDQNT 259

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  136 bits (345), Expect = 2e-34
 Identities = 88/473 (18%), Positives = 162/473 (34%), Gaps = 66/473 (13%)

Query: 22  SFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT- 80
           +F +I   L  S + L LS++ L    +    F     LQ L +   +++    GA+Q+ 
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
           + L  L +  N +          L  L++L     +L+      + +L +L+ L+V++N 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
           +           LT++E L LS+N  Q  I    L  L ++   N  + L      N   
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDL----SLN--- 187

Query: 201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLD 260
               +  I        G F +                                 +L  L 
Sbjct: 188 ---PMNFI------QPGAFKEI--------------------------------RLHKLT 206

Query: 261 VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLAN 320
           + NNF   ++       L GL    L    F   +   L+    + ++ L  ++      
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF--RNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 321 NYIEG---EIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHA-S 376
            Y++    +I      L  V    L    +   +     N                    
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 377 APALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLT--GEIPTQIGYLTRIRALNLSHN 434
             +L   +   +  G   +   L S+  +DLS N L+  G         T ++ L+LS N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 435 NLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIV---LTTLAVFRVAYNNLS 484
            +  T+   F  L+Q+E LD  ++ L  ++ +  V   L  L    +++ +  
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  123 bits (311), Expect = 5e-30
 Identities = 77/508 (15%), Positives = 160/508 (31%), Gaps = 95/508 (18%)

Query: 1   FHEFKNLEHLVMDQ-MLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVH 59
           +    +L  L++    +  +           ++SL+ L    + L    + +     L  
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFS----GLSSLQKLVAVETNLAS--LENFPIGHLKT 125

Query: 60  LQELYIRDNDLRDSLLGA--WQTTSLQELNVASNKLTRNFPLGLCEL----VLLRELYID 113
           L+EL +  N ++   L       T+L+ L+++SNK+   +   L  L    +L   L + 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 114 NNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI----- 168
            N ++   P     +  L  L +  N  + ++  + +  L  +E   L    F+      
Sbjct: 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 169 ---PISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYR----DDGTFPK 221
                +LE L NL+  +     +    +   +       ++S SL         D ++  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 222 FLYHQHDLKN----------ADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQG-HI 270
              H   +              L  L  +            L  L  LD+S N       
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 271 PVEIGTYLPGLMHLNLSRNAFN---------------DLSYNRLQGSIPNWI--DRLPQI 313
             +       L +L+LS N                  D  ++ L+  +  +     L  +
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNL 423

Query: 314 SYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWD 373
            YL +++ +           L  + ++ ++ N+   +                       
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL--------------------- 462

Query: 374 HASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 433
                               +    L +++ +DLS  +L    PT    L+ ++ LN++ 
Sbjct: 463 -------------------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 434 NNLTGTIPITFSNLKQIESLDLSYNLLH 461
           N L       F  L  ++ + L  N   
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  119 bits (301), Expect = 8e-29
 Identities = 94/481 (19%), Positives = 165/481 (34%), Gaps = 79/481 (16%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVASN 91
            L++L LS   +   TI D  +  L HL  L +  N ++   LGA    +SLQ+L     
Sbjct: 53  ELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 92  KLTRNFPLGLCELVLLRELYIDNNDL-SGSLPLCLTNLTSLQVLDVSYNQLTESISSSPL 150
            L       +  L  L+EL + +N + S  LP   +NLT+L+ LD+S N++  SI  + L
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDL 169

Query: 151 MLLTS----IEELILSNNHFQ-IPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQL 205
            +L         L LS N    I         L KL   N    L             ++
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 206 TSISLSGYRDDGTFPKFLYHQ-HDLKNADLSHLNLSG--EFPNWLMPI-HCLQKLATLDV 261
             + L  +R++G   KF       L N  +    L+    + + ++ + +CL  +++  +
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 262 SNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN-------------DLSYNRLQGSIPNWID 308
            +   +    V+  +Y  G  HL L    F                + N+   +      
Sbjct: 290 VSVTIER---VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--V 344

Query: 309 RLPQISYLLLANNYIE--GEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYD 366
            LP + +L L+ N +   G           ++ +DLS N +   +    +          
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG--------- 394

Query: 367 AVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTR 425
                                           L  +  +D   + L       +   L  
Sbjct: 395 --------------------------------LEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 426 IRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIV--LTTLAVFRVAYNNL 483
           +  L++SH +        F+ L  +E L ++ N         I   L  L    ++   L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 484 S 484
            
Sbjct: 483 E 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.0 bits (221), Expect = 8e-19
 Identities = 67/449 (14%), Positives = 131/449 (29%), Gaps = 99/449 (22%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQ----ELYIRDNDLRDSLLGAWQTTSLQEL 86
           + +L  L LS +++   +I       L  +      L +  N +     GA++   L +L
Sbjct: 148 LTNLEHLDLSSNKIQ--SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 87  NVASNKLTRNFPLGLCE-------LVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN 139
            + +N  + N      +         L+   + +  +L       L  L +L + +    
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 140 QLTESISSSPLML--LTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYN 197
            L   +     +   LT++    L +   +             L+  N +          
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 198 SLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHC----- 252
           SL  +   TS                + + DL +  L  L+LS    N L    C     
Sbjct: 326 SLK-RLTFTSNKGGN----------AFSEVDLPS--LEFLDLSR---NGLSFKGCCSQSD 369

Query: 253 --LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN-----------------D 293
                L  LD+S N     +       L  L HL+   +                    D
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 294 LSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQ-LCQLKEVRLIDLSHNNLSGHIP 352
           +S+   + +     + L  +  L +A N  +         +L+ +  +DLS   L   + 
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLS 486

Query: 353 FCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL 412
                                                         L+S+  ++++ N+L
Sbjct: 487 ----------------------------------------PTAFNSLSSLQVLNMASNQL 506

Query: 413 TGEIPTQIGYLTRIRALNLSHNNLTGTIP 441
                     LT ++ + L  N    + P
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 1   FHEFKNLEHLVMDQ-MLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVH 59
           F   +NL +L +                   ++SL +L ++ +   +   L   F +L +
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSF-QENFLPDIFTELRN 471

Query: 60  LQELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLS 118
           L  L +    L      A+ + +SLQ LN+ASN+L          L  L+++++  N   
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

Query: 119 GSLPL 123
            S P 
Sbjct: 532 CSCPR 536

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (333), Expect = 3e-33
 Identities = 87/434 (20%), Positives = 162/434 (37%), Gaps = 62/434 (14%)

Query: 56  QLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNN 115
            L    +  +   ++ D  +       +  L      +      G+  L  L ++   NN
Sbjct: 22  ALAEKMKTVLGKTNVTD-TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 78

Query: 116 DLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPL 175
            L+   P  L NLT L  + ++ NQ+      +PL  LT++  L L NN       L+ L
Sbjct: 79  QLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQITDIDPLKNL 133

Query: 176 SNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLS 235
           +NL++L+  +  I        + ++    LTS+    + +  T  K L +   L+  D+S
Sbjct: 134 TNLNRLELSSNTI--------SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185

Query: 236 HLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS 295
              +S      +  +  L  L +L  +NN      P+     L  L  L+L+ N   D+ 
Sbjct: 186 SNKVSD-----ISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKDIG 237

Query: 296 YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCL 355
                      +  L  ++ L LANN I    P  L  L ++  + L  N +S   P   
Sbjct: 238 T----------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL-- 283

Query: 356 VNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE 415
                              A   AL+    N + +     +  L +++ + L  N ++  
Sbjct: 284 -------------------AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 324

Query: 416 IPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAV 475
            P  +  LT+++ L   +N ++     + +NL  I  L   +N +   +  L  LT +  
Sbjct: 325 SP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD-LTPLANLTRITQ 379

Query: 476 FRVAYNNLSGKIPD 489
             +     +    +
Sbjct: 380 LGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  122 bits (308), Expect = 5e-30
 Identities = 100/484 (20%), Positives = 178/484 (36%), Gaps = 80/484 (16%)

Query: 27  VSELMASLRLLSLSYSRLNKNTILD-QGFCQLVHLQELYIRDNDLRD-SLLGAWQTTSLQ 84
           V++ ++   L  ++  + ++  I    G   L +L ++   +N L D + L     T L 
Sbjct: 36  VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLV 93

Query: 85  ELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE- 143
           ++ + +N++    PL    L  L  L + NN ++   PL   NLT+L  L++S N +++ 
Sbjct: 94  DILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDI 149

Query: 144 -----------------SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNG 186
                                 PL  LT++E L +S+N       L  L+NL  L A N 
Sbjct: 150 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 209

Query: 187 EIYLETESHYNSLTPKFQLTSI-SLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPN 245
           +I        + +TP   LT++  LS   +       L    +L + DL++  +S     
Sbjct: 210 QI--------SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN---- 257

Query: 246 WLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPN 305
            L P+  L KL  L +  N      P+     L  L +L L+ N   D+S          
Sbjct: 258 -LAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLEDISP--------- 304

Query: 306 WIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYY 365
            I  L  ++YL L  N I    P  +  L +++ +   +N +S                 
Sbjct: 305 -ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSL------------ 349

Query: 366 DAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTR 425
                    A+   +++ S   + +     +  LT ++ + L+    T        Y   
Sbjct: 350 ---------ANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVN---YKAN 397

Query: 426 IRALNLSHNNLTGTI-PITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
           +   N   N     I P T S+       D+++NL           +            S
Sbjct: 398 VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFS 457

Query: 485 GKIP 488
           G + 
Sbjct: 458 GTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (266), Expect = 1e-24
 Identities = 92/437 (21%), Positives = 156/437 (35%), Gaps = 86/437 (19%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVAS 90
           + +L  L+L     N+ T +D     L +L  L +  N + D +      TSLQ+L+   
Sbjct: 111 LTNLTGLTLFN---NQITDID-PLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSF-G 164

Query: 91  NKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPL 150
           N++T   PL    L  L  L I +N +S      L  LT+L+ L  + NQ++     +PL
Sbjct: 165 NQVTDLKPLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS---DITPL 217

Query: 151 MLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISL 210
            +LT+++EL L+ N  +   +L  L+NL+ L   N +I     S+   L+   +LT + L
Sbjct: 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI-----SNLAPLSGLTKLTELKL 272

Query: 211 SGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHI 270
              +     P  L     L N +L+   L       + PI  L+ L  L +  N      
Sbjct: 273 GANQISNISP--LAGLTALTNLELNENQLED-----ISPISNLKNLTYLTLYFNNISDIS 325

Query: 271 PVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQ 330
           PV     L  L  L    N  +D+S           +  L  I++L   +N I    P  
Sbjct: 326 PVS---SLTKLQRLFFYNNKVSDVSS----------LANLTNINWLSAGHNQISDLTP-- 370

Query: 331 LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPM 390
           L  L  +  + L+    +                                          
Sbjct: 371 LANLTRITQLGLNDQAWTNAPV-------------------------------------- 392

Query: 391 GKEETVQILTSMSGIDLSCNKLTGEI-PTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQ 449
                     ++S  +   N     I P  I         +++ N  + T  +++    Q
Sbjct: 393 ------NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSY-TFSQ 445

Query: 450 IESLDLSYNLLHGKIPQ 466
             ++        G + Q
Sbjct: 446 PVTIGKGTTTFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 99.7 bits (249), Expect = 2e-22
 Identities = 71/396 (17%), Positives = 142/396 (35%), Gaps = 85/396 (21%)

Query: 106 LLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNH 165
           L       +  ++       T L       +    +T+++       L  +  L      
Sbjct: 3   LGSATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLG 57

Query: 166 FQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYH 225
            +   S++ +  L+ L     +I        N      QLT I+             L +
Sbjct: 58  IK---SIDGVEYLNNLT----QINF----SNN------QLTDIT------------PLKN 88

Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
              L +  +++  ++      + P+  L  L  L + NN      P++    L  L  L 
Sbjct: 89  LTKLVDILMNNNQIAD-----ITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLE 140

Query: 286 LSRNAFNDLS-------------YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLC 332
           LS N  +D+S              N++    P  +  L  +  L +++N +     + L 
Sbjct: 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 196

Query: 333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGK 392
           +L  +  +  ++N +S   P                           L   S NG+ +  
Sbjct: 197 KLTNLESLIATNNQISDITPL---------------------GILTNLDELSLNGNQLKD 235

Query: 393 EETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIES 452
             T+  LT+++ +DL+ N+++   P  +  LT++  L L  N ++   P+  + L  + +
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTN 291

Query: 453 LDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIP 488
           L+L+ N L   I  +  L  L    + +NN+S   P
Sbjct: 292 LELNENQLED-ISPISNLKNLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.0 bits (242), Expect = 2e-21
 Identities = 68/408 (16%), Positives = 137/408 (33%), Gaps = 106/408 (25%)

Query: 82  SLQELNVAS-NKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
            L    +     + + F      L    +  +   +++ ++    T+L  +  L      
Sbjct: 2   PLGSATITQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLG 57

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
           +    S   +  L ++ ++  SNN       + PL NL+KL     +I +    + N + 
Sbjct: 58  IK---SIDGVEYLNNLTQINFSNNQLT---DITPLKNLTKLV----DILM----NNNQIA 103

Query: 201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLD 260
               +T ++                  +L N  L+ L L       + P+  L  L  L+
Sbjct: 104 ---DITPLA------------------NLTN--LTGLTLFNNQITDIDPLKNLTNLNRLE 140

Query: 261 VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLAN 320
           +S+N       +     L  L  L+           N++    P  +  L  +  L +++
Sbjct: 141 LSSNTISDISALS---GLTSLQQLSFG---------NQVTDLKP--LANLTTLERLDISS 186

Query: 321 NYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPAL 380
           N +     + L +L  +  +  ++N +S   P  +                         
Sbjct: 187 NKVSD--ISVLAKLTNLESLIATNNQISDITPLGI------------------------- 219

Query: 381 SYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI 440
                             LT++  + L+ N+L       +  LT +  L+L++N ++   
Sbjct: 220 ------------------LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 259

Query: 441 PITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIP 488
           P+  S L ++  L L  N +   I  L  LT L    +  N L    P
Sbjct: 260 PL--SGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLEDISP 304

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  128 bits (323), Expect = 1e-31
 Identities = 82/482 (17%), Positives = 156/482 (32%), Gaps = 89/482 (18%)

Query: 20  NTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ 79
           + SF  I S L A+++ L LS++++    I         +LQ L ++ + +      A+ 
Sbjct: 14  SRSFTSIPSGLTAAMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSRINTIEGDAFY 71

Query: 80  -TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSG-SLPLCLTNLTSLQVLDVS 137
              SL+ L+++ N L+         L  L+ L +  N      +     NLT+LQ L + 
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 138 YNQLTESISSSPLMLLTSIEELILSNNHFQI--PISLEPLSNLSKLKAFNGEIYLETESH 195
             +    I       LTS+ EL +     +     SL+ + ++  L             H
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL-----------H 180

Query: 196 YNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQK 255
            +      +   +       +            ++  +L   NL+    + L        
Sbjct: 181 LS------ESAFLL------EIFADIL----SSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID------- 308
           +  L    +        E+   L  ++ L+     F+D + N L    P+  D       
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELS--EVEFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 309 -RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDA 367
                I  L +   Y+  ++      L++V+ I + ++ +   +P               
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVP--------------- 326

Query: 368 VAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQ---IGYLT 424
                                        Q L S+  +DLS N +  E        G   
Sbjct: 327 -------------------------CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 425 RIRALNLSHNNLT--GTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNN 482
            ++ L LS N+L            LK + SLD+S N  H           +    ++   
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 421

Query: 483 LS 484
           + 
Sbjct: 422 IR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  127 bits (320), Expect = 3e-31
 Identities = 78/469 (16%), Positives = 153/469 (32%), Gaps = 69/469 (14%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA--WQTTSLQELNV 88
           + SL  L LS + L+  ++    F  L  L+ L +  N  +   + +     T+LQ L +
Sbjct: 73  LGSLEHLDLSDNHLS--SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 89  ASNKLTRNFPLG-LCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISS 147
            + +            L  L EL I    L       L ++  +  L +  ++    +  
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLE 189

Query: 148 SPLMLLTSIEELILSNNHFQ-----IPISLEPLSNLSKLKAFNGEI------YLETESHY 196
               +L+S+  L L + +            E  S + KL      +       L     Y
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 197 NSLTPKFQLTSISLSGYRD-DGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMP--IHCL 253
                + +    +L+G  D + +    +     ++   +  L++   +  + +      L
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309

Query: 254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN-------------------DL 294
           +K+  + V N+     +P     +L  L  L+LS N                       L
Sbjct: 310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

Query: 295 SYNRLQ--GSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIP 352
           S N L+        +  L  ++ L ++ N     +P      +++R ++LS   +   + 
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVK 426

Query: 353 FCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL 412
            C+  T                 S   L  FS              L  +  + +S NKL
Sbjct: 427 TCIPQTL-----------EVLDVSNNNLDSFSLF------------LPRLQELYISRNKL 463

Query: 413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461
              +P        +  + +S N L       F  L  ++ + L  N   
Sbjct: 464 K-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  112 bits (281), Expect = 3e-26
 Identities = 65/408 (15%), Positives = 138/408 (33%), Gaps = 44/408 (10%)

Query: 82  SLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQL 141
           +    +  S   T   P GL     ++ L +  N ++      L    +LQVL +  +++
Sbjct: 6   ASGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 142 TESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTP 201
             +I       L S+E L LS+NH    +S      LS LK     + L      N    
Sbjct: 63  N-TIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLK----YLNL----MGN---- 108

Query: 202 KFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDV 261
                ++ ++             +  +L+   + ++    E     +    L  L  L++
Sbjct: 109 --PYQTLGVTS---------LFPNLTNLQTLRIGNVETFSEIRR--IDFAGLTSLNELEI 155

Query: 262 SNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANN 321
                + +   +    +  + HL         L  +     +  + D L  + YL L + 
Sbjct: 156 KALSLR-NYQSQSLKSIRDIHHL--------TLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 322 YIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVN-TALSEGYYDAVAPTWDHASAPAL 380
            +     + L   +    +       S            L     +     +D  +   L
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 381 SYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI 440
             F+P+ S +  E       ++  + +    L  ++ T    L +++ + + ++ +    
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 441 PITFSNLKQIESLDLSYNLLHGKIPQ----LIVLTTLAVFRVAYNNLS 484
                +LK +E LDLS NL+  +  +         +L    ++ N+L 
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (252), Expect = 1e-22
 Identities = 66/364 (18%), Positives = 127/364 (34%), Gaps = 63/364 (17%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRL-----NKNTILDQGFC 55
                ++ +L +    +         V E+ + ++ L+   S L     N+   L +   
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 56  QLVHLQELYIRDNDLRD---------SLLGAWQTTSLQELNVASNKLTRNFPLGLCELVL 106
           +L  ++      N L D         S LG  +T +++ L++    L  +       L  
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESI--SSSPLMLLTSIEELILSNN 164
           ++ + ++N+ +         +L SL+ LD+S N + E    +S+      S++ L+LS N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 165 HFQ-IPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFL 223
           H + +  + E L  L  L      + +      N+                     P   
Sbjct: 372 HLRSMQKTGEILLTLKNLT----SLDI----SRNTFH-----------------PMPDSC 406

Query: 224 YHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMH 283
                ++  +LS   +       ++     Q L  LDVSNN            +LP L  
Sbjct: 407 QWPEKMRFLNLSSTGIR------VVKTCIPQTLEVLDVSNNNLD-----SFSLFLPRLQE 455

Query: 284 LNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLS 343
           L +SRN    L    L           P +  + ++ N ++        +L  ++ I L 
Sbjct: 456 LYISRNKLKTLPDASL----------FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505

Query: 344 HNNL 347
            N  
Sbjct: 506 TNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 49/286 (17%), Positives = 90/286 (31%), Gaps = 50/286 (17%)

Query: 16  LVEVNTSFLQIVSELMASLRLLSLSYSRLNKN---TILDQGFCQLVHLQELYIRDNDLRD 72
           L + N S   +VSEL   +  +++    + +      L   +  L  ++ + + ++ +  
Sbjct: 266 LGDFNPSESDVVSEL-GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 73  SLLGAWQ-TTSLQELNVASNKLTRNF---PLGLCELVLLRELYIDNNDLS--GSLPLCLT 126
                 Q   SL+ L+++ N +   +            L+ L +  N L         L 
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

Query: 127 NLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNG 186
            L +L  LD+S N       S        +  L LS+   ++ +       L  L     
Sbjct: 385 TLKNLTSLDISRNTFHPMPDS--CQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDV--- 438

Query: 187 EIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNW 246
                     N+L                  +F  FL          L  L +S      
Sbjct: 439 --------SNNNLD-----------------SFSLFLPR--------LQELYISRNKLKT 465

Query: 247 LMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN 292
           L        L  + +S N  +  +P  I   L  L  + L  N ++
Sbjct: 466 LPDASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 41/184 (22%), Positives = 66/184 (35%), Gaps = 20/184 (10%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
               K+LE L + + L+               SL+ L LS + L       +    L +L
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 61  QELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVL-------------- 106
             L I  N              ++ LN++S  +          L +              
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLF 449

Query: 107 ---LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSN 163
              L+ELYI  N L  +LP   +    L V+ +S NQL  S+       LTS++++ L  
Sbjct: 450 LPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHT 506

Query: 164 NHFQ 167
           N + 
Sbjct: 507 NPWD 510

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  122 bits (309), Expect = 6e-31
 Identities = 70/416 (16%), Positives = 151/416 (36%), Gaps = 85/416 (20%)

Query: 83  LQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLT 142
              L      + + FP    +L       +    ++  +      L S+  L V+  ++ 
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKVA 57

Query: 143 ESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPK 202
              S   +  LT++E L L+ N       + PLSNL KL      +Y+      N +T  
Sbjct: 58  ---SIQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLT----NLYI----GTNKIT-- 101

Query: 203 FQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVS 262
             ++++                   +L N  L  L L+ +  + + P+  L K+ +L++ 
Sbjct: 102 -DISALQ------------------NLTN--LRELYLNEDNISDISPLANLTKMYSLNLG 140

Query: 263 NNFFQGHIPVEIGTYLPGLMHLNLSRNAFND--------------LSYNRLQGSIPNWID 308
            N     +   +   + GL +L ++ +   D              L+YN+++   P  + 
Sbjct: 141 ANHNLSDLS-PLSN-MTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LA 196

Query: 309 RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAV 368
            L  + Y     N I    P  +  +  +  + + +N ++   P                
Sbjct: 197 SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPL--------------- 239

Query: 369 APTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA 428
                 A+   L++     + +     V+ LT +  +++  N+++    + +  L+++ +
Sbjct: 240 ------ANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNS 291

Query: 429 LNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
           L L++N L          L  + +L LS N +   I  L  L+ +     A   + 
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (288), Expect = 5e-28
 Identities = 71/339 (20%), Positives = 133/339 (39%), Gaps = 64/339 (18%)

Query: 29  ELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNV 88
           E + S+  L ++  ++       QG   L +L+ L +  N + D +        L  L +
Sbjct: 41  EELESITKLVVAGEKVAS----IQGIEYLTNLEYLNLNGNQITD-ISPLSNLVKLTNLYI 95

Query: 89  ASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSS 148
            +NK+T      L  L  LRELY++ +++S   PL   NLT +  L++  N     +S  
Sbjct: 96  GTNKITD--ISALQNLTNLRELYLNEDNISDISPL--ANLTKMYSLNLGANHNLSDLS-- 149

Query: 149 PLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSI 208
           PL  +T +  L ++ +  +    + P++NL+ L      + L    +YN      Q+  I
Sbjct: 150 PLSNMTGLNYLTVTESKVK---DVTPIANLTDLY----SLSL----NYN------QIEDI 192

Query: 209 SLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQG 268
           S             L     L         ++      + P+  + +L +L + NN    
Sbjct: 193 S------------PLASLTSLHYFTAYVNQITD-----ITPVANMTRLNSLKIGNNKITD 235

Query: 269 HIPVEIGTYLPGLMHLNLSRNAFN--------------DLSYNRLQGSIPNWIDRLPQIS 314
             P+     L  L  L +  N  +              ++  N++   I   ++ L Q++
Sbjct: 236 LSPLA---NLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQIS-DISV-LNNLSQLN 290

Query: 315 YLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPF 353
            L L NN +  E    +  L  +  + LS N+++   P 
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL 329

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  109 bits (274), Expect = 3e-26
 Identities = 65/316 (20%), Positives = 119/316 (37%), Gaps = 58/316 (18%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNK 92
            L  L +     NK T +      L +L+ELY+ ++++ D +      T +  LN+ +N 
Sbjct: 89  KLTNLYIGT---NKITDIS-ALQNLTNLRELYLNEDNISD-ISPLANLTKMYSLNLGANH 143

Query: 93  LTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLML 152
              +    L  +  L  L +  + +    P+   NLT L  L ++YNQ+      SPL  
Sbjct: 144 NLSD-LSPLSNMTGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIE---DISPLAS 197

Query: 153 LTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSG 212
           LTS+       N       + P++N+++L      + +      N      ++T +S   
Sbjct: 198 LTSLHYFTAYVNQIT---DITPVANMTRLN----SLKI----GNN------KITDLS--- 237

Query: 213 YRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPV 272
                     L +   L   ++    +S      +  +  L KL  L+V +N       +
Sbjct: 238 ---------PLANLSQLTWLEIGTNQISD-----INAVKDLTKLKMLNVGSNQISDISVL 283

Query: 273 EIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLC 332
                L  L  L L+         N+L       I  L  ++ L L+ N+I    P  L 
Sbjct: 284 N---NLSQLNSLFLN--------NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330

Query: 333 QLKEVRLIDLSHNNLS 348
            L ++   D ++  + 
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  102 bits (256), Expect = 8e-24
 Identities = 62/410 (15%), Positives = 137/410 (33%), Gaps = 81/410 (19%)

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166
              L      ++   P    +L       +    +T+ +       L SI +L+++    
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKV 56

Query: 167 QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSI-SLSGYRDDGTFPKFLYH 225
               S++ +  L+ L+     + L   +    ++P   L  + +L    +  T    L +
Sbjct: 57  A---SIQGIEYLTNLE----YLNL-NGNQITDISPLSNLVKLTNLYIGTNKITDISALQN 108

Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
             +L+   L+  N+S      + P+  L K+ +L++  N     +   +   + GL +L 
Sbjct: 109 LTNLRELYLNEDNISD-----ISPLANLTKMYSLNLGANHNLSDLS-PLSN-MTGLNYLT 161

Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
           ++ +   D++           I  L  +  L L  N IE   P  L  L  +       N
Sbjct: 162 VTESKVKDVTP----------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209

Query: 346 NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
            ++   P                                              +T ++ +
Sbjct: 210 QITDITPVAN-------------------------------------------MTRLNSL 226

Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP 465
            +  NK+T   P  +  L+++  L +  N ++        +L +++ L++  N +   I 
Sbjct: 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS-DIS 281

Query: 466 QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSK 515
            L  L+ L    +  N L  +  + +   +         N     +PL+ 
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS 331

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 92.2 bits (230), Expect = 2e-20
 Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 21/234 (8%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVAS 90
           +  +  L+L     N N         +  L  L + ++ ++D +      T L  L++  
Sbjct: 131 LTKMYSLNLGA---NHNLSDLSPLSNMTGLNYLTVTESKVKD-VTPIANLTDLYSLSLNY 186

Query: 91  NKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPL 150
           N++    PL    L  L       N ++   P+   N+T L  L +  N++T     SPL
Sbjct: 187 NQIEDISPLA--SLTSLHYFTAYVNQITDITPVA--NMTRLNSLKIGNNKIT---DLSPL 239

Query: 151 MLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISL 210
             L+ +  L +  N      +++ L+ L  L   + +I     S  N+L+   QL S+ L
Sbjct: 240 ANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI--SDISVLNNLS---QLNSLFL 294

Query: 211 SGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNN 264
           +  +      + +    +L    LS  +++      + P+  L K+ + D +N 
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-----IRPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.3 bits (181), Expect = 3e-14
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 10/135 (7%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVAS 90
           M  L  L +  +++   +        L  L  L I  N + D +      T L+ LNV S
Sbjct: 220 MTRLNSLKIGNNKITDLS----PLANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGS 274

Query: 91  NKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPL 150
           N+++ +    L  L  L  L+++NN L       +  LT+L  L +S N +T      PL
Sbjct: 275 NQIS-DIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPL 329

Query: 151 MLLTSIEELILSNNH 165
             L+ ++    +N  
Sbjct: 330 ASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 9e-11
 Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVAS 90
           ++ L  L +     N+ + ++     L  L+ L +  N + D +      + L  L + +
Sbjct: 242 LSQLTWLEIGT---NQISDIN-AVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNN 296

Query: 91  NKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE 143
           N+L       +  L  L  L++  N ++   PL   +L+ +   D +   + +
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--ASLSKMDSADFANQVIKK 347

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (288), Expect = 2e-27
 Identities = 64/404 (15%), Positives = 118/404 (29%), Gaps = 65/404 (16%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
              +   V  + L +           ++EL +  N LS      L   T L++L++S N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
           L E   +  L  L+++  L L+NN+ Q    L    ++  L A             N   
Sbjct: 70  LYE---TLDLESLSTLRTLDLNNNYVQ---ELLVGPSIETLHA-----------ANN--- 109

Query: 201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLD 260
               ++ +S S                  KN  L++  ++           C  ++  LD
Sbjct: 110 ---NISRVSCS------RGQG-------KKNIYLANNKITMLRDLD---EGCRSRVQYLD 150

Query: 261 VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN--------------DLSYNRLQGSIPNW 306
           +  N        E+      L HLNL  N                 DLS N+L   +   
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPE 209

Query: 307 IDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYD 366
                 ++++ L NN +   I   L   + +   DL  N           +         
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 367 A------VAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG----EI 416
                       +  + P L ++               L ++   + +     G     +
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERL 328

Query: 417 PTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL 460
             +     R R ++         I       +   +L+     L
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (269), Expect = 5e-25
 Identities = 66/503 (13%), Positives = 138/503 (27%), Gaps = 81/503 (16%)

Query: 27  VSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQE 85
           + +     ++  ++ S L     L        +++EL +  N L           T L+ 
Sbjct: 5   IKQNGNRYKIEKVTDSSLK--QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 86  LNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESI 145
           LN++SN L     L    L  LR L ++NN +       L    S++ L  + N     I
Sbjct: 63  LNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNN----I 111

Query: 146 SSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQL 205
           S          + + L+NN   + +        S+++     + L      N      ++
Sbjct: 112 SRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQ----YLDL----KLN------EI 156

Query: 206 TSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNF 265
            +++         F +       L++ +L +  +  +    +       KL TLD+S+N 
Sbjct: 157 DTVN---------FAELAASSDTLEHLNLQYNFIY-DVKGQV----VFAKLKTLDLSSNK 202

Query: 266 FQGHIPVEIGTYLPGLMHLNLSRNAFN---------------DLSYNRLQ-GSIPNWIDR 309
               +  E      G+  ++L  N                  DL  N    G++ ++  +
Sbjct: 203 LA-FMGPEFQ-SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 310 LPQISYLLL-ANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAV 368
             ++  +       + G+   +               +L       L+     E    + 
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320

Query: 369 APTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA 428
                                   E   +       ID    +    I            
Sbjct: 321 ----------------QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKIT 364

Query: 429 LNLSHNNLTGTIPITFSNLKQIESL---DLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSG 485
           L      L   +        +++      +    L     +   L  L      Y  +  
Sbjct: 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYV 424

Query: 486 KIPDRVAQFSTFEEDSYEGNPFL 508
           +            +        L
Sbjct: 425 EQQSVQNNAIRDWDMYQHKETQL 447

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 394 ETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESL 453
           E  Q         ++ + L   + +       ++ L+LS N L+       +   ++E L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 454 DLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
           +LS N+L+     L  L+TL    +  N + 
Sbjct: 64  NLSSNVLYE-TLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 416 IPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIV-LTTLA 474
           I        R +   ++ ++L   +     +   ++ LDLS N L       +   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 475 VFRVAYNNLSG 485
           +  ++ N L  
Sbjct: 62  LLNLSSNVLYE 72

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  114 bits (286), Expect = 8e-27
 Identities = 74/464 (15%), Positives = 145/464 (31%), Gaps = 99/464 (21%)

Query: 26  IVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQ 84
           I S L        +      ++         L + + +  +++ +R            ++
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 85  ELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTES 144
            LN+   ++             +++LY+  N +    P    N+  L VL +  N L+ S
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 137

Query: 145 ISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQ 204
           +          +  L +SNN+ +  I  +     + L+     + L      N      +
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQ----NLQL----SSN------R 182

Query: 205 LTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNN 264
           LT +      D    P             L H N+S    N L  +     +  LD S+N
Sbjct: 183 LTHV------DLSLIPS------------LFHANVSY---NLLSTLAIPIAVEELDASHN 221

Query: 265 FFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIE 324
                +   +      L  L L  N   D +          W+   P +  + L+ N +E
Sbjct: 222 SIN-VVRGPV---NVELTILKLQHNNLTDTA----------WLLNYPGLVEVDLSYNELE 267

Query: 325 GEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFS 384
             +     +++ +  + +S+N L   +                                 
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLV-ALN-------------------------------- 294

Query: 385 PNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITF 444
                       Q + ++  +DLS N L   +        R+  L L HN++  T+    
Sbjct: 295 ---------LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--L 341

Query: 445 SNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIP 488
           S    +++L LS+N          +   +A   V   +   KI 
Sbjct: 342 STHHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHCKID 384

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  108 bits (272), Expect = 4e-25
 Identities = 69/454 (15%), Positives = 143/454 (31%), Gaps = 52/454 (11%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVA 89
           + + ++++   S +    +          ++ L + D  + +    A     ++Q+L + 
Sbjct: 50  LNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 107

Query: 90  SNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSP 149
            N +    P     + LL  L ++ NDLS        N   L  L +S N L   I    
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 166

Query: 150 LMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSIS 209
               TS++ L LS+N     + L  + +L         +        ++L     +  + 
Sbjct: 167 FQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLL--------STLAIPIAVEELD 217

Query: 210 LSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPI---HCLQKLATLDVSNNFF 266
            S           +       N +L+ L L     N L           L  +D+S N  
Sbjct: 218 ASHNS--------INVVRGPVNVELTILKLQH---NNLTDTAWLLNYPGLVEVDLSYNEL 266

Query: 267 QGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGE 326
           +  I       +  L  L +S         NRL  ++  +   +P +  L L++N++   
Sbjct: 267 E-KIMYHPFVKMQRLERLYIS--------NNRLV-ALNLYGQPIPTLKVLDLSHNHLL-H 315

Query: 327 IPAQLCQLKEVRLIDLSHNNLSGHIPFC---------LVNTALSEGYYDAVAPTWDHASA 377
           +     Q   +  + L HN++   +            L +         A+       + 
Sbjct: 316 VERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV 374

Query: 378 PALSYFSPNGSPMGKE----ETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 433
                       +       E+ +         ++   +  ++    G  +    +N   
Sbjct: 375 DDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQ 434

Query: 434 NNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQL 467
           +            L+  E L+   N L  ++ QL
Sbjct: 435 SLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQL 468

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 89.6 bits (222), Expect = 7e-19
 Identities = 61/408 (14%), Positives = 131/408 (32%), Gaps = 105/408 (25%)

Query: 98  PLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIE 157
              L    +  +++ID              L + +++    + +   + ++ L     +E
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVE 78

Query: 158 ELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDG 217
            L L++   +  I     +    ++    ++Y+     +N       +  +         
Sbjct: 79  LLNLNDLQIEE-IDTYAFAYAHTIQ----KLYM----GFN------AIRYL------PPH 117

Query: 218 TFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPI-----HCLQKLATLDVSNNFFQGHIPV 272
            F        ++    L+ L L     N L  +     H   KL TL +SNN  +  I  
Sbjct: 118 VF-------QNVPL--LTVLVLER---NDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIED 164

Query: 273 EIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLC 332
           +       L +L LS N    +            +  +P + +  ++ N +       L 
Sbjct: 165 DTFQATTSLQNLQLSSNRLTHVD-----------LSLIPSLFHANVSYNLLS-----TLA 208

Query: 333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGK 392
               V  +D SHN+++  +                                         
Sbjct: 209 IPIAVEELDASHNSIN-VVRG--------------------------------------- 228

Query: 393 EETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIES 452
                +   ++ + L  N LT +    +     +  ++LS+N L   +   F  ++++E 
Sbjct: 229 ----PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282

Query: 453 LDLSYNLLHGKIPQLIV-LTTLAVFRVAYNNLSGKIPDRVAQFSTFEE 499
           L +S N L   +      + TL V  +++N+L   +     QF   E 
Sbjct: 283 LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (278), Expect = 1e-26
 Identities = 57/327 (17%), Positives = 113/327 (34%), Gaps = 39/327 (11%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVA 89
           + + ++++   S +    +          ++ L + D  + +    A     ++Q+L + 
Sbjct: 44  LNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 101

Query: 90  SNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSP 149
            N +    P     + LL  L ++ NDLS        N   L  L +S N L   I    
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

Query: 150 LMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSIS 209
               TS++ L LS+N     + L  + +L         +        ++L     +  + 
Sbjct: 161 FQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLL--------STLAIPIAVEELD 211

Query: 210 LSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPI---HCLQKLATLDVSNNFF 266
            S           +       N +L+ L L     N L           L  +D+S N  
Sbjct: 212 ASHNS--------INVVRGPVNVELTILKLQH---NNLTDTAWLLNYPGLVEVDLSYNEL 260

Query: 267 QGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGE 326
           +  I       +  L  L +S         NRL  ++  +   +P +  L L++N++   
Sbjct: 261 E-KIMYHPFVKMQRLERLYIS--------NNRLV-ALNLYGQPIPTLKVLDLSHNHLL-H 309

Query: 327 IPAQLCQLKEVRLIDLSHNNLSGHIPF 353
           +     Q   +  + L HN++   +  
Sbjct: 310 VERNQPQFDRLENLYLDHNSIV-TLKL 335

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (268), Expect = 3e-25
 Identities = 74/459 (16%), Positives = 143/459 (31%), Gaps = 109/459 (23%)

Query: 26  IVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQ 84
           I S L        +      ++         L + + +  +++ +R            ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 85  ELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTES 144
            LN+   ++             +++LY+  N +    P    N+  L VL +  N L+ S
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 131

Query: 145 ISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQ 204
           +          +  L +SNN+ +  I  +     + L+     + L      N      +
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQ----NLQL----SSN------R 176

Query: 205 LTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNN 264
           LT +      D    P             L H N+S    N L  +     +  LD S+N
Sbjct: 177 LTHV------DLSLIPS------------LFHANVSY---NLLSTLAIPIAVEELDASHN 215

Query: 265 FFQGHIPVEIGTYLPGLMHLNLSRNAFN--------------DLSYNRLQGSIPNWIDRL 310
                +   +      L  L L  N                 DLSYN L+  + +   ++
Sbjct: 216 SIN-VVRGPV---NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAP 370
            ++  L ++NN +   +      +  ++++DLSHN+L  H+                   
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVE------------------ 311

Query: 371 TWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALN 430
                                          +  + L  N +   +   +     ++ L 
Sbjct: 312 -----------------------RNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLT 345

Query: 431 LSHNNLTGT-IPITFSNLKQIESLDLS------YNLLHG 462
           LSHN+     +   F N+ +    D        Y L HG
Sbjct: 346 LSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHG 384

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (258), Expect = 5e-24
 Identities = 69/417 (16%), Positives = 144/417 (34%), Gaps = 106/417 (25%)

Query: 86  LNVASNKLTRNFPLGLCELVL--LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE 143
            +V  +  T++   G  ++ L   + +   N+ +       L +   +++L+++  Q+ E
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 83

Query: 144 SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKF 203
            I +       +I++L +  N  +  +      N+  L      + L      N      
Sbjct: 84  -IDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLT----VLVL----ERN------ 127

Query: 204 QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIH-----CLQKLAT 258
            L+S+        G F       H+     L+ L++S    N L  I          L  
Sbjct: 128 DLSSL------PRGIF-------HNTPK--LTTLSMSN---NNLERIEDDTFQATTSLQN 169

Query: 259 LDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN-----------DLSYNRLQGSIPNWI 307
           L +S+N    H+ + +   +P L H N+S N  +           D S+N +   +    
Sbjct: 170 LQLSSNRLT-HVDLSL---IPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRG-- 222

Query: 308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDA 367
               +++ L L +N +  +    L     +  +DLS+N L   I                
Sbjct: 223 PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIM--------------- 264

Query: 368 VAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIR 427
                                          +  +  + +S N+L   +      +  ++
Sbjct: 265 -------------------------YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298

Query: 428 ALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
            L+LSHN+L   +        ++E+L L +N +   +  L    TL    +++N+  
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.9 bits (195), Expect = 7e-16
 Identities = 66/363 (18%), Positives = 126/363 (34%), Gaps = 58/363 (15%)

Query: 1   FHEFKNLEHLVMDQ-MLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVH 59
              F+ +E L ++   + E++T           +++ L + ++ +    +    F  +  
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGFNAIR--YLPPHVFQNVPL 118

Query: 60  LQELYIRDNDLRDSLLGA-WQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLS 118
           L  L +  NDL     G    T  L  L++++N L R           L+ L + +N L+
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

Query: 119 GSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNL 178
             + L  + + SL   +VSYN L+       L +  ++EEL  S+N   + +       L
Sbjct: 179 -HVDL--SLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINV-VRGPVNVEL 228

Query: 179 SKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYR----DDGTFPKFLYHQHDLKNADL 234
           + LK  +  +     +    L     L  + LS           F         ++   L
Sbjct: 229 TILKLQHNNL-----TDTAWLLNYPGLVEVDLSYNELEKIMYHPF-------VKMQR--L 274

Query: 235 SHLNLSG----EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290
             L +S         +  P   +  L  LD+S+N    H+          L +L L  N+
Sbjct: 275 ERLYISNNRLVALNLYGQP---IPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNS 329

Query: 291 FNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGH 350
              L            +     +  L L++N  +      L   + V    +   +    
Sbjct: 330 IVTLK-----------LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCK 376

Query: 351 IPF 353
           I +
Sbjct: 377 IDY 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.4 bits (178), Expect = 9e-14
 Identities = 26/172 (15%), Positives = 65/172 (37%), Gaps = 11/172 (6%)

Query: 25  QIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAW-QTTSL 83
            +   +   L +L L ++ L               L E+ +  N+L   +   + +   L
Sbjct: 219 VVRGPVNVELTILKLQHNNLTDTA----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 84  QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE 143
           + L +++N+L     L    +  L+ L + +N L   +         L+ L + +N +  
Sbjct: 275 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 331

Query: 144 SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESH 195
              +  L    +++ L LS+N +          N+++    + + + + +  
Sbjct: 332 ---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQ 380

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 51/364 (14%), Positives = 103/364 (28%), Gaps = 117/364 (32%)

Query: 123 LCLTNLTSLQVLDVSYNQLTESISSSPLML-LTSIEELILSNNHFQIPISLEPLSNLSKL 181
           +           DV  +  T+ +      + L + + +   N+  +  +    L +  ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQV 71

Query: 182 KAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSG 241
           +     + L    +        Q+  I      D   F                      
Sbjct: 72  E----LLNL----NDL------QIEEI------DTYAFAY-------------------- 91

Query: 242 EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQG 301
                         +  L +  N  + ++P  +   +P L  L L RN  + L       
Sbjct: 92  -----------AHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 302 SIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ-LKEVRLIDLSHNNLSGHIPFCLVNTAL 360
                    P+++ L ++NN +E  I     Q    ++ + LS N L+ H+         
Sbjct: 140 --------TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL------- 182

Query: 361 SEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI 420
                                                ++ S+   ++S N L+      +
Sbjct: 183 ------------------------------------SLIPSLFHANVSYNLLS-----TL 201

Query: 421 GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAY 480
                +  L+ SHN++          L     L L +N L      L+    L    ++Y
Sbjct: 202 AIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLT-DTAWLLNYPGLVEVDLSY 257

Query: 481 NNLS 484
           N L 
Sbjct: 258 NELE 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 399 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
              +  ++L+  ++  EI T    Y   I+ L +  N +    P  F N+  +  L L  
Sbjct: 68  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 458 NLLHGKIPQLIV--LTTLAVFRVAYNNLSGKIPDRV 491
           N L   +P+ I      L    ++ NNL  +I D  
Sbjct: 127 NDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  109 bits (275), Expect = 7e-26
 Identities = 82/498 (16%), Positives = 155/498 (31%), Gaps = 95/498 (19%)

Query: 36  LLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTR 95
             S   +             QL  L  L   ++ + D + G  + T L +L   SN +T 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MTGIEKLTGLTKLICTSNNITT 78

Query: 96  NFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTS 155
              L L +   L  L  D+N L+ +L +  T LT L  L+   N+LT       +     
Sbjct: 79  ---LDLSQNTNLTYLACDSNKLT-NLDV--TPLTKLTYLNCDTNKLT----KLDVSQNPL 128

Query: 156 IEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRD 215
           +  L  + N     I +   + L++L     +   + +    +     QLT++  S    
Sbjct: 129 LTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQT-----QLTTLDCS---- 178

Query: 216 DGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIG 275
                             ++ L++S             + L  L+   N     + +   
Sbjct: 179 ---------------FNKITELDVSQ-----------NKLLNRLNCDTNNIT-KLDL--- 208

Query: 276 TYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLK 335
                L  L+ S N   ++            +  L Q++Y   + N +     + L +L 
Sbjct: 209 NQNIQLTFLDCSSNKLTEID-----------VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257

Query: 336 EVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEET 395
               +     +L                         D      L YF   G    KE  
Sbjct: 258 T---LHCIQTDLL----------------------EIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 396 VQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDL 455
           V   T +  +D     +T E+   +    ++  L L++  LT  + +  S+  +++SL  
Sbjct: 293 VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELDV--SHNTKLKSLSC 346

Query: 456 SYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSK 515
               +      +  +  L     A       +P      ++            +G P++ 
Sbjct: 347 VNAHI-QDFSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMNI 404

Query: 516 SCDDNGLTTVTTEAYTEN 533
              D G+    T   T  
Sbjct: 405 EPGDGGVYDQATNTITWE 422

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.5 bits (225), Expect = 2e-19
 Identities = 81/477 (16%), Positives = 148/477 (31%), Gaps = 91/477 (19%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVAS 90
           +A+L  L       +  T +  G  +L  L +L    N++    L   Q T+L  L   S
Sbjct: 41  LATLTSLDCHN---SSITDMT-GIEKLTGLTKLICTSNNITT--LDLSQNTNLTYLACDS 94

Query: 91  NKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPL 150
           NKLT    L +  L  L  L  D N L+  L +  +    L  L+ + N LT       +
Sbjct: 95  NKLTN---LDVTPLTKLTYLNCDTNKLT-KLDV--SQNPLLTYLNCARNTLT----EIDV 144

Query: 151 MLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT----PKFQLT 206
              T + EL    N     + + P + L+ L     +I     S    L         +T
Sbjct: 145 SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNIT 204

Query: 207 SISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWL--MPIHCLQKLATLDVSNN 264
            + L+                   N  L+ L+ S    N L  + +  L +L   D S N
Sbjct: 205 KLDLNQ------------------NIQLTFLDCSS---NKLTEIDVTPLTQLTYFDCSVN 243

Query: 265 FFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIE 324
                + V     L  L  L+  +    ++            +    Q+ Y         
Sbjct: 244 PLT-ELDVST---LSKLTTLHCIQTDLLEID-----------LTHNTQLIYFQAEGCRKI 288

Query: 325 GEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFS 384
            E+   +    ++ L+D     ++  +     N  L           + + +   L+   
Sbjct: 289 KELD--VTHNTQLYLLDCQAAGIT-ELDLSQ-NPKL----------VYLYLNNTELTELD 334

Query: 385 PNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITF 444
            +             T +  +      +  +  + +G +  +     +          T 
Sbjct: 335 VSH-----------NTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETL 381

Query: 445 SNLKQIES-----LDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFST 496
           +N     +     LD   N +    P    +   A   + + NLS   P     F++
Sbjct: 382 TNNSLTIAVSPDLLDQFGNPM-NIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTS 437

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 51/289 (17%), Positives = 97/289 (33%), Gaps = 53/289 (18%)

Query: 196 YNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQK 255
           +N   P     S   + +    T          L + D  + +++      +  I  L  
Sbjct: 11  FNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-----MTGIEKLTG 65

Query: 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISY 315
           L  L  ++N     + +   +    L +L    N   +L            +  L +++Y
Sbjct: 66  LTKLICTSNNIT-TLDL---SQNTNLTYLACDSNKLTNLD-----------VTPLTKLTY 110

Query: 316 LLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHA 375
           L    N +     +Q   L     ++ + N L+                        D +
Sbjct: 111 LNCDTNKLTKLDVSQNPLLTY---LNCARNTLT----------------------EIDVS 145

Query: 376 SAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN 435
               L+    + +    +  V   T ++ +D S NK+T E+   +     +  LN   NN
Sbjct: 146 HNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNN 202

Query: 436 LTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
           +T    +  +   Q+  LD S N L  +I  +  LT L  F  + N L+
Sbjct: 203 ITK---LDLNQNIQLTFLDCSSNKLT-EID-VTPLTQLTYFDCSVNPLT 246

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (270), Expect = 4e-25
 Identities = 71/331 (21%), Positives = 125/331 (37%), Gaps = 43/331 (12%)

Query: 20  NTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ 79
              F+ +   +    RLL L  +R+   T+    F    HL+EL + +N +     GA+ 
Sbjct: 20  RKRFVAVPEGIPTETRLLDLGKNRIK--TLNQDEFASFPHLEELELNENIVSAVEPGAFN 77

Query: 80  -TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY 138
              +L+ L + SN+L          L  L +L I  N +   L     +L +L+ L+V  
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 139 NQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNS 198
           N L   IS      L S+E+L L   +    I  E LS+L  L      + L     +  
Sbjct: 138 NDLV-YISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLI----VLRL----RHL- 186

Query: 199 LTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLAT 258
                 + +I       D +F       + LK  ++SH           +       L +
Sbjct: 187 -----NINAIR------DYSF----KRLYRLKVLEISHWPYLDTMTPNCLY---GLNLTS 228

Query: 259 LDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLL 318
           L +++      +P     +L  L  LNLS N  + +  + L          L ++  + L
Sbjct: 229 LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE--------LLRLQEIQL 279

Query: 319 ANNYIEGEIPAQ-LCQLKEVRLIDLSHNNLS 348
               +   +       L  +R++++S N L+
Sbjct: 280 VGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (256), Expect = 2e-23
 Identities = 72/388 (18%), Positives = 123/388 (31%), Gaps = 93/388 (23%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
           T  + L++  N++             L EL ++ N +S   P    NL +L+ L +  N+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
           L   I       L+++ +L +S N   I +      +L  LK     + +      N   
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLK----SLEV----GDN--- 138

Query: 201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIH-----CLQK 255
               L  IS         F         L +  L  L L       L  I       L  
Sbjct: 139 ---DLVYIS------HRAF-------SGLNS--LEQLTLEK---CNLTSIPTEALSHLHG 177

Query: 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISY 315
           L  L + +      I       L  L  L        ++S+     ++         ++ 
Sbjct: 178 LIVLRLRHLNIN-AIRDYSFKRLYRLKVL--------EISHWPYLDTMTPNCLYGLNLTS 228

Query: 316 LLLANNYIEGEIPAQLCQ-LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDH 374
           L + +  +   +P    + L  +R ++LS+N +S  I      + L E            
Sbjct: 229 LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIE----GSMLHE------------ 270

Query: 375 ASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSH 433
                                   L  +  I L   +L   +       L  +R LN+S 
Sbjct: 271 ------------------------LLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSG 305

Query: 434 NNLTGTIPITFSNLKQIESLDLSYNLLH 461
           N LT      F ++  +E+L L  N L 
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.0 bits (247), Expect = 3e-22
 Identities = 62/299 (20%), Positives = 112/299 (37%), Gaps = 31/299 (10%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVA 89
              L  L L+ + ++   +    F  L +L+ L +R N L+   LG     ++L +L+++
Sbjct: 55  FPHLEELELNENIVS--AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112

Query: 90  SNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSP 149
            NK+         +L  L+ L + +NDL        + L SL+ L +    LT SI +  
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEA 171

Query: 150 LMLLTSIEELILSNNHFQI--PISLEPLSNLSKLK-AFNGEIYLETESHYNSLTPKFQLT 206
           L  L  +  L L + +       S + L  L  L+ +    +   T +    L     LT
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN----LT 227

Query: 207 SISLSGYR----DDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVS 262
           S+S++                 H   L+  +LS+  +S    + L     L +L  + + 
Sbjct: 228 SLSITHCNLTAVPYLAV----RHLVYLRFLNLSYNPISTIEGSMLHE---LLRLQEIQLV 280

Query: 263 NNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANN 321
                  +       L  L  LN+S N    L          +    +  +  L+L +N
Sbjct: 281 GGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLE--------ESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.9 bits (226), Expect = 1e-19
 Identities = 58/299 (19%), Positives = 111/299 (37%), Gaps = 48/299 (16%)

Query: 1   FHEFKNLEHLVMDQ-MLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVH 59
           F+   NL  L +    L  +           +++L  L +S +++    +LD  F  L +
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTG----LSNLTKLDISENKIV--ILLDYMFQDLYN 129

Query: 60  LQELYIRDNDLRDSLLGA-WQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLS 118
           L+ L + DNDL      A     SL++L +    LT      L  L  L  L + + +++
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 119 GSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNL 178
                    L  L+VL++S+    ++++ + L  L ++  L +++ +    +    + +L
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTA-VPYLAVRHL 247

Query: 179 SKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLN 238
             L+     + L     YN       +++I      +           H+L    L  + 
Sbjct: 248 VYLR----FLNL----SYN------PISTI------EGSML-------HELLR--LQEIQ 278

Query: 239 LSGEFPNWLMPIHC-----LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN 292
           L G     L  +       L  L  L+VS N     +   +   +  L  L L  N   
Sbjct: 279 LVG---GQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 38/268 (14%), Positives = 75/268 (27%), Gaps = 63/268 (23%)

Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
               +                 +P     +   LD+  N  +  +  +     P L  L 
Sbjct: 10  SAQDRAVLCHRKRFVA------VPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELE 62

Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ-LKEVRLIDLSH 344
           L+ N  + +               L  +  L L +N ++  IP  +   L  +  +D+S 
Sbjct: 63  LNENIVSAVEPGAFNN--------LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISE 113

Query: 345 NNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSG 404
           N +   +                                         +   Q L ++  
Sbjct: 114 NKIV-ILL----------------------------------------DYMFQDLYNLKS 132

Query: 405 IDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGK 463
           +++  N L   I  +    L  +  L L   NLT       S+L  +  L L +  ++  
Sbjct: 133 LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-A 190

Query: 464 IPQ--LIVLTTLAVFRVAYNNLSGKIPD 489
           I       L  L V  +++      +  
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTP 218

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.9 bits (122), Expect = 9e-07
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 50/202 (24%)

Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIP 352
                R   ++P  I    +   L L  N I+     +      +  ++L+ N +S  + 
Sbjct: 17  LCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVE 72

Query: 353 FCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL 412
                                                         L ++  + L  N+L
Sbjct: 73  ----------------------------------------PGAFNNLFNLRTLGLRSNRL 92

Query: 413 TGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ--LIV 469
              IP  +   L+ +  L++S N +   +   F +L  ++SL++  N L   I       
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSG 150

Query: 470 LTTLAVFRVAYNNLSGKIPDRV 491
           L +L    +   NL+  IP   
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEA 171

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (259), Expect = 2e-24
 Identities = 61/400 (15%), Positives = 114/400 (28%), Gaps = 119/400 (29%)

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166
            +   + ++ L  +L     +  +++ LD+S N L+  IS++ L   T +E L LS+N  
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVL 70

Query: 167 QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQ 226
                   L +LS L+                                            
Sbjct: 71  Y---ETLDLESLSTLR-------------------------------------------- 83

Query: 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNL 286
                     L+L+    N++  +     + TL  +NN     +         G  ++ L
Sbjct: 84  ---------TLDLNN---NYVQELLVGPSIETLHAANNNIS-RVSCSR---GQGKKNIYL 127

Query: 287 SRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEG-EIPAQLCQLKEVRLIDLSHN 345
           + N    L                 ++ YL L  N I+             +  ++L +N
Sbjct: 128 ANNKITMLR--------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 346 NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
            +   +   +V   L                                            +
Sbjct: 180 FIY-DVKGQVVFAKLKT------------------------------------------L 196

Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP 465
           DLS NKL   +  +      +  ++L +N L   I       + +E  DL  N  H    
Sbjct: 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 466 QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGN 505
           +        V  VA   +  K+  +  +  T     + G 
Sbjct: 255 RDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.5 bits (246), Expect = 8e-23
 Identities = 53/326 (16%), Positives = 110/326 (33%), Gaps = 55/326 (16%)

Query: 24  LQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTS 82
           +  + +     ++  ++ S L     L        +++EL +  N L           T 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK--QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 83  LQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLT 142
           L+ LN++SN L     L    L  LR L ++NN +       L    S++ L  + N   
Sbjct: 60  LELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN-- 110

Query: 143 ESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPK 202
             IS          + + L+NN   +   L+     S+++     + L+     N     
Sbjct: 111 --ISRVSCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQ----YLDLK----LN----- 154

Query: 203 FQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVS 262
            ++ +++         F +       L++ +L +  +  +    +       KL TLD+S
Sbjct: 155 -EIDTVN---------FAELAASSDTLEHLNLQYNFIY-DVKGQV----VFAKLKTLDLS 199

Query: 263 NNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNY 322
           +N     +  E      G+  ++L  N             I   +     + +  L  N 
Sbjct: 200 SNKLA-FMGPEFQ-SAAGVTWISLRNNKLV---------LIEKALRFSQNLEHFDLRGNG 248

Query: 323 IEGEIPAQLCQLKEVRLIDLSHNNLS 348
                  +    K  R+  ++   + 
Sbjct: 249 FH-CGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.2 bits (170), Expect = 6e-13
 Identities = 30/267 (11%), Positives = 73/267 (27%), Gaps = 85/267 (31%)

Query: 253 LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQ 312
             +     V+++  +      +      +  L        DLS N L       +    +
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKEL--------DLSGNPLSQISAADLAPFTK 59

Query: 313 ISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTW 372
           +  L L++N +  E    L  L  +R +DL++N +                         
Sbjct: 60  LELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ------------------------ 93

Query: 373 DHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLS 432
                                  + +  S+  +  + N ++  +          + + L+
Sbjct: 94  ----------------------ELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLA 128

Query: 433 HNNLTGTIPITFSNLKQIESLDLSYNLLHG------------------------KIPQLI 468
           +N +T    +      +++ LDL  N +                           +   +
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 469 VLTTLAVFRVAYNNLSGKIPDRVAQFS 495
           V   L    ++ N L+  +       +
Sbjct: 189 VFAKLKTLDLSSNKLA-FMGPEFQSAA 214

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 394 ETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESL 453
           E  Q         ++ + L   + +       ++ L+LS N L+       +   ++E L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 454 DLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
           +LS N+L+ +   L  L+TL    +  N + 
Sbjct: 64  NLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 48/159 (30%)

Query: 302 SIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALS 361
           +I        +     + ++ ++  + +       V+ +DLS N LS  I          
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QIS--------- 50

Query: 362 EGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIG 421
                                             +   T +  ++LS N L  E    + 
Sbjct: 51  -------------------------------AADLAPFTKLELLNLSSNVLY-ETLD-LE 77

Query: 422 YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL 460
            L+ +R L+L++N +             IE+L  + N +
Sbjct: 78  SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 416 IPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIV-LTTLA 474
           I        R +   ++ ++L   +     +   ++ LDLS N L       +   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 475 VFRVAYNNLS 484
           +  ++ N L 
Sbjct: 62  LLNLSSNVLY 71

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  105 bits (264), Expect = 2e-24
 Identities = 69/438 (15%), Positives = 136/438 (31%), Gaps = 73/438 (16%)

Query: 32  ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSL-LGA-WQTTSLQELNVA 89
           A +  + LS + + +  + +  F +L  LQ L +        +        +SL  L + 
Sbjct: 30  AHVNYVDLSLNSIAE--LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 90  SNKLTRNFPLGLCELVLLRELYIDNNDL-SGSLPL-CLTNLTSLQVLDVSYNQLTESISS 147
            N+  +        L  L  L +   +L    L       LTSL++L +  N + +   +
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 148 SPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTS 207
           S  + +     L L+ N     +      +L   +  +   +        +L        
Sbjct: 148 SFFLNMRRFHVLDLTFN----KVKSICEEDLLNFQGKH---FTLLRLSSITLQ------- 193

Query: 208 ISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQ 267
             ++ Y          +    +   DLS                   K+ +L +SN++  
Sbjct: 194 -DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 268 G-HIPVEIGTYLPGLMHLNLSRNAFN--DLSYNRLQGSIPNWI-DRLPQISYLLLANNYI 323
           G                  L  +     DLS +++  ++   +      +  L LA N I
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEI 311

Query: 324 EGEIPAQ-LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSY 382
             +I       L  +  ++LS N L           ++    ++                
Sbjct: 312 N-KIDDNAFWGLTHLLKLNLSQNFL----------GSIDSRMFEN--------------- 345

Query: 383 FSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIP 441
                           L  +  +DLS N +   +  Q    L  ++ L L  N L  ++P
Sbjct: 346 ----------------LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVP 387

Query: 442 -ITFSNLKQIESLDLSYN 458
              F  L  ++ + L  N
Sbjct: 388 DGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.1 bits (242), Expect = 1e-21
 Identities = 68/370 (18%), Positives = 119/370 (32%), Gaps = 56/370 (15%)

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166
           +  + +  N ++       + L  LQ L V        I ++    L+S+  L L  N F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 167 QIPISLEP--LSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLY 224
                LE    + L+ L+     + L              L    LS       F     
Sbjct: 92  L---QLETGAFNGLANLE----VLTL----TQC------NLDGAVLS----GNFFKPLTS 130

Query: 225 HQH-DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPG--L 281
            +   L++ ++  +  +  F N       +++   LD++ N  +  I  E      G   
Sbjct: 131 LEMLVLRDNNIKKIQPASFFLN-------MRRFHVLDLTFNKVK-SICEEDLLNFQGKHF 182

Query: 282 MHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLID 341
             L LS     D++   L         +   I+ L L+ N  +  +  +         I 
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242

Query: 342 LSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFS---------PNGSPMGK 392
               + S ++     +T       D    T+    A  +                     
Sbjct: 243 SLILSNSYNMGSSFGHTNFK----DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH- 297

Query: 393 EETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIE 451
                  T +  + L+ N++  +I       LT +  LNLS N L       F NL ++E
Sbjct: 298 ------FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350

Query: 452 SLDLSYNLLH 461
            LDLSYN + 
Sbjct: 351 VLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 62/371 (16%), Positives = 120/371 (32%), Gaps = 59/371 (15%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
           F   ++L+ L ++Q                ++SL +L L Y++     +    F  L +L
Sbjct: 50  FSRLQDLQFLKVEQQ--TPGLVIRNNTFRGLSSLIILKLDYNQFL--QLETGAFNGLANL 105

Query: 61  QELYIRDNDLRDSLL--GAWQT-TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDL 117
           + L +   +L  ++L    ++  TSL+ L +  N + +  P                   
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF---------------- 149

Query: 118 SGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSN 177
                    N+    VLD+++N++  SI    L+        +L  +   +    E    
Sbjct: 150 -------FLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 178 LSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHL 237
             K         + T                    + D     K             S  
Sbjct: 202 WEKCGNPFKNTSITTLDLSG-----NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 238 --NLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN------ 289
                 +  N+         + T D+S +     +   + ++   L  L L++N      
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKID 315

Query: 290 --AFN--------DLSYNRLQGSIPNWI-DRLPQISYLLLANNYIEGEIPAQLCQ-LKEV 337
             AF         +LS N L  SI + + + L ++  L L+ N+I   +  Q    L  +
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNL 373

Query: 338 RLIDLSHNNLS 348
           + + L  N L 
Sbjct: 374 KELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVA 89
            + ++   LS S++    +L   F     L++L +  N++      A W  T L +LN++
Sbjct: 274 ASGVKTCDLSKSKIF--ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331

Query: 90  SNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPLCL-TNLTSLQVLDVSYNQLTESISS 147
            N L  +    + E L  L  L +  N +  +L       L +L+ L +  NQL  S+  
Sbjct: 332 QNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPD 388

Query: 148 SPLMLLTSIEELILSNNHFQ 167
                LTS++++ L  N + 
Sbjct: 389 GIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 49/319 (15%), Positives = 90/319 (28%), Gaps = 95/319 (29%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAW---QTTSLQELN 87
           + SL +L L  + + K       F  +     L +  N ++          Q      L 
Sbjct: 128 LTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 88  VASNKLTRNFPLGLCE--------LVLLRELYIDNNDLSGSLPLCLTNL----------- 128
           ++S  L       L             +  L +  N    S+     +            
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 129 ----------------------------TSLQVLDVSYNQLTESISSSPLMLLTSIEELI 160
                                       + ++  D+S +++  ++  S     T +E+L 
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLT 305

Query: 161 LSNNHFQIPISLEP--LSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGT 218
           L+ N       ++      L+ L     ++ L      N       L SI      D   
Sbjct: 306 LAQNEIN---KIDDNAFWGLTHLL----KLNL----SQN------FLGSI------DSRM 342

Query: 219 FPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHC-----LQKLATLDVSNNFFQGHIPVE 273
           F        +L    L  L+LS    N +  +       L  L  L +  N  +  +P  
Sbjct: 343 F-------ENLDK--LEVLDLSY---NHIRALGDQSFLGLPNLKELALDTNQLK-SVPDG 389

Query: 274 IGTYLPGLMHLNLSRNAFN 292
           I   L  L  + L  N ++
Sbjct: 390 IFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPI-TFSNLKQIESLDLS 456
           +   ++ +DLS N +     T    L  ++ L +        I   TF  L  +  L L 
Sbjct: 28  LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 457 YNLLHGKIP--QLIVLTTLAVFRVAYNNL-SGKIPDRV 491
           YN    ++       L  L V  +   NL    +    
Sbjct: 88  YNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (263), Expect = 3e-24
 Identities = 85/469 (18%), Positives = 137/469 (29%), Gaps = 129/469 (27%)

Query: 24  LQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSL 83
           L  + EL   L  L  S    N  T L +    L  L         L D          L
Sbjct: 83  LSSLPELPPHLESLVASC---NSLTELPELPQSLKSLLVDNNNLKALSDLP------PLL 133

Query: 84  QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLT-------------- 129
           + L V++N+L +   L       L+ + +DNN L   LP    +L               
Sbjct: 134 EYLGVSNNQLEKLPELQ--NSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPE 190

Query: 130 -----SLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAF 184
                 L  +    N L +           S+E ++  NN  +    L+ L  L+ + A 
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILEELPELQNLPFLTTIYA- 244

Query: 185 NGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFP 244
                       N L                  T P        L+  ++    L+ + P
Sbjct: 245 ----------DNNLLK-----------------TLPDLPPS---LEALNVRDNYLT-DLP 273

Query: 245 NWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN------------ 292
                    Q L  LDVS N F       +    P L +LN S N               
Sbjct: 274 E------LPQSLTFLDVSENIFS-----GLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 322

Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIP 352
           ++S N+L   +P    RL     L+ + N++  E+P     LK+   + + +N L    P
Sbjct: 323 NVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFP 373

Query: 353 FCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL 412
               +                      +     N       E  Q L  +    +  N L
Sbjct: 374 DIPES----------------------VEDLRMNSHLAEVPELPQNLKQL---HVETNPL 408

Query: 413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461
             E P     +     L ++   +            ++E     ++  H
Sbjct: 409 R-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  102 bits (257), Expect = 1e-23
 Identities = 85/468 (18%), Positives = 144/468 (30%), Gaps = 120/468 (25%)

Query: 32  ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSL--------------LGA 77
            S   L       +  T +      +    E Y   ++   +               L  
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 78  WQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVS 137
                  EL + +  L+   P     L     L    N L+  LP    +L SL V + +
Sbjct: 68  CLDRQAHELELNNLGLSS-LPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNN 122

Query: 138 YNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYN 197
              L++        L   +E L +SNN  +    L  L N S LK     I +      N
Sbjct: 123 LKALSD--------LPPLLEYLGVSNNQLE---KLPELQNSSFLK----IIDV----DNN 163

Query: 198 SLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLA 257
           SL                    P        L+     +  L  E P     +  L  L 
Sbjct: 164 SLK-----------------KLPDLPPS---LEFIAAGNNQLE-ELP----ELQNLPFLT 198

Query: 258 TLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLL 317
            +   NN  +  +P    +    L  +            N L       +  LP ++ + 
Sbjct: 199 AIYADNNSLK-KLPDLPLS----LESI--------VAGNNIL--EELPELQNLPFLTTIY 243

Query: 318 LANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVN-TALSEGYYDAVAPTWDHAS 376
             NN ++  +P     L+    +++  N L+  +P    + T L                
Sbjct: 244 ADNNLLK-TLPDLPPSLEA---LNVRDNYLT-DLPELPQSLTFLD--------------- 283

Query: 377 APALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNL 436
              +S    +G         ++  ++  ++ S N++   +      L     LN+S+N L
Sbjct: 284 ---VSENIFSGLS-------ELPPNLYYLNASSNEIR-SLCDLPPSLEE---LNVSNNKL 329

Query: 437 TGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
              +P     L   E L  S+N L  ++P+L     L    V YN L 
Sbjct: 330 I-ELPALPPRL---ERLIASFNHLA-EVPELP--QNLKQLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 63/375 (16%), Positives = 114/375 (30%), Gaps = 98/375 (26%)

Query: 3   EFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQE 62
           E +N   L +    ++V+ + L+ + +L  SL  ++      N+   L +    L  L  
Sbjct: 148 ELQNSSFLKI----IDVDNNSLKKLPDLPPSLEFIAAGN---NQLEELPE-LQNLPFLTA 199

Query: 63  LYIRDNDLRD--SLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSG- 119
           +Y  +N L+    L       SL+ +   +N L       L  L  L  +Y DNN L   
Sbjct: 200 IYADNNSLKKLPDLPL-----SLESIVAGNNILEE--LPELQNLPFLTTIYADNNLLKTL 252

Query: 120 ------------------SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELIL 161
                              LP    +LT L V +  ++ L+E        L  ++  L  
Sbjct: 253 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE--------LPPNLYYLNA 304

Query: 162 SNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPK 221
           S+N  +I    +   +L +L               N L                    P 
Sbjct: 305 SSN--EIRSLCDLPPSLEELNV-----------SNNKLI-----------------ELPA 334

Query: 222 FLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGL 281
                  L+    S  +L+ E P         Q L  L V  N  +   P    + +  L
Sbjct: 335 LP---PRLERLIASFNHLA-EVPEL------PQNLKQLHVEYNPLR-EFPDIPES-VEDL 382

Query: 282 MHLNLSRNAFN--------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ 333
              +                +  N L+   P+  + +     L + +  +          
Sbjct: 383 RMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESV---EDLRMNSERVVDPYEFAHET 438

Query: 334 LKEVRLIDLSHNNLS 348
             ++      H++  
Sbjct: 439 TDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 74/411 (18%), Positives = 121/411 (29%), Gaps = 123/411 (29%)

Query: 79  QTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY 138
             T LQE    S+ LT   P+    +    E Y   ++   + P        + V  +  
Sbjct: 9   SNTFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 139 NQLTESISSSPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLKAFNGEIYLETESHYN 197
                        L     EL L+N     +P     L +L               +  N
Sbjct: 68  C------------LDRQAHELELNNLGLSSLPELPPHLESLV--------------ASCN 101

Query: 198 SLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLA 257
           SLT                   P+       L   + +   LS   P           L 
Sbjct: 102 SLT-----------------ELPELPQSLKSLLVDNNNLKALSDLPPL----------LE 134

Query: 258 TLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLL 317
            L VSNN  +  +P E+      L  +++  N+   L             D  P + ++ 
Sbjct: 135 YLGVSNNQLE-KLP-ELQ-NSSFLKIIDVDNNSLKKL------------PDLPPSLEFIA 179

Query: 318 LANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASA 377
             NN +E E+P +L  L  +  I   +N+L   +P   ++                    
Sbjct: 180 AGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLS-------------------- 216

Query: 378 PALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT 437
                                L S   I    N L      ++  L  +  +   +N L 
Sbjct: 217 ---------------------LES---IVAGNNILE--ELPELQNLPFLTTIYADNNLLK 250

Query: 438 GTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIP 488
            T+P    +L+   +L++  N L         LT L V    ++ LS   P
Sbjct: 251 -TLPDLPPSLE---ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 27/174 (15%), Positives = 53/174 (30%), Gaps = 41/174 (23%)

Query: 316 LLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHA 375
            L  ++ +  E+P +   +K       + +    + P                       
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGE------------------ 56

Query: 376 SAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN 435
                   + +      +     L      +L+   L+  +P    +L     L  S N+
Sbjct: 57  ----QREMAVSRLRDCLDRQAHEL------ELNNLGLS-SLPELPPHLES---LVASCNS 102

Query: 436 LTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPD 489
           LT  +P    +LK +   + +   L    P L  L       V+ N L  K+P+
Sbjct: 103 LT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYL------GVSNNQLE-KLPE 148

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNL----------- 447
            T +       + LT E+P +   +        + +      P                 
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 448 --KQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPD 489
             +Q   L+L+   L   +P+L     L     + N+L+ ++P+
Sbjct: 69  LDRQAHELELNNLGLS-SLPELP--PHLESLVASCNSLT-ELPE 108

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (255), Expect = 7e-24
 Identities = 48/391 (12%), Positives = 98/391 (25%), Gaps = 82/391 (20%)

Query: 79  QTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY 138
            ++  + L    +   R +   L +         +    +        N  + Q+   + 
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 139 NQLTESISSSPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLKAFNGEIYLETESHYN 197
             L  +              L L +      P     LS+L  +        +       
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHM-------TI----DAA 114

Query: 198 SLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLA 257
            L                    P  +     L+   L+   L    P     I  L +L 
Sbjct: 115 GLM-----------------ELPDTMQQFAGLETLTLARNPLR-ALPAS---IASLNRLR 153

Query: 258 TLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLL 317
            L +        +P  + +      H  L       L +  ++ S+P  I  L  +  L 
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK 212

Query: 318 LANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASA 377
           + N+ +   +   +  L ++  +DL       + P                         
Sbjct: 213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG-------------------- 251

Query: 378 PALSYFSPNGSPMGKEETVQILTSMSGIDLS-CNKLTGEIPTQIGYLTRIRALNLSHNNL 436
                                   +  + L  C+ L   +P  I  LT++  L+L     
Sbjct: 252 ---------------------RAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVN 289

Query: 437 TGTIPITFSNLKQIESLDLSYNLLHGKIPQL 467
              +P   + L     + +  +L        
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (253), Expect = 1e-23
 Identities = 64/344 (18%), Positives = 99/344 (28%), Gaps = 75/344 (21%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRD--SLLGAWQTTSLQELNVAS 90
            L      Y+                + Q        L+    LL          L + S
Sbjct: 31  VLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS 90

Query: 91  NKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLT---ESISS 147
             L + FP     L  L+ + ID   L   LP  +     L+ L ++ N L     SI+S
Sbjct: 91  VPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIAS 148

Query: 148 SPLMLLTSIEELILSNN-----------HFQIPISLEPLSNLSKLKAFNGEIYLETESHY 196
                L  + EL +                      + L NL  L+             +
Sbjct: 149 -----LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-----------EW 192

Query: 197 NSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSG----EFPNWLMPIHC 252
             +                  + P  + +   L+N  L  L +              IH 
Sbjct: 193 TGIR-----------------SLPASIAN---LQN--LKSLKIRNSPLSALGPA---IHH 227

Query: 253 LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQ 312
           L KL  LD+       + P   G     L  L L          + L  ++P  I RL Q
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILK-------DCSNLL-TLPLDIHRLTQ 278

Query: 313 ISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN---NLSGHIPF 353
           +  L L        +P+ + QL    +I +  +    L  H P 
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 53/335 (15%), Positives = 99/335 (29%), Gaps = 60/335 (17%)

Query: 14  QMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQ--GFCQLVHLQELYIRDNDLR 71
           Q     + +         A+     +                         L +R   L 
Sbjct: 36  QRHYNADRNRWHSAWRQ-ANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP 94

Query: 72  ---DSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNL 128
              D     ++ + LQ + + +  L    P  + +   L  L +  N L  +LP  + +L
Sbjct: 95  QFPDQA---FRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASL 149

Query: 129 TSLQVLDVSY-NQLTE-------SISSSPLMLLTSIEELILSNNHF-QIPISLEPLSNLS 179
             L+ L +    +LTE       + +S     L +++ L L       +P S+  L NL 
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209

Query: 180 KLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNL 239
            LK              + L+                      ++H   L+  DL     
Sbjct: 210 SLKI-----------RNSPLS-----------------ALGPAIHHLPKLEELDLRGCTA 241

Query: 240 SGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRL 299
              +P           L  L + +      +P++I   L  L  L+L            L
Sbjct: 242 LRNYPPI---FGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGC-------VNL 290

Query: 300 QGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQL 334
              +P+ I +LP    +L+  +        +    
Sbjct: 291 S-RLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 7e-20
 Identities = 44/307 (14%), Positives = 91/307 (29%), Gaps = 39/307 (12%)

Query: 205 LTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNN 264
             ++   G      +   L       NAD +  + +    N                +  
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-------SNNPQIETRTGR 66

Query: 265 FFQGHIPVEIGT-YLPGLMHLNLSRNAFN---------------DLSYNRLQGSIPNWID 308
             +      +     PG + L L                      +    L   +P+ + 
Sbjct: 67  ALK-ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 309 RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAV 368
           +   +  L LA N +   +PA +  L  +R + +        +P  L +T  S  +   V
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 369 APTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA 428
                      +     +   +        L ++  + +  + L+  +   I +L ++  
Sbjct: 184 NLQSLRLEWTGIRSLPAS---IAN------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233

Query: 429 LNLSHNNLTGTIPITFSNLKQIESLDLS-YNLLHGKIPQLIV-LTTLAVFRVAYNNLSGK 486
           L+L         P  F     ++ L L   + L   +P  I  LT L    +       +
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 487 IPDRVAQ 493
           +P  +AQ
Sbjct: 293 LPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 15/132 (11%)

Query: 5   KNLEHLVMDQ-MLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQEL 63
           +NL+ L +    L  +  +        +  L  L L              F     L+ L
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHH-----LPKLEELDLRGC--TALRNYPPIFGGRAPLKRL 258

Query: 64  YIRD-NDLR---DSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSG 119
            ++D ++L      +    + T L++L++         P  + +L     + +  +  + 
Sbjct: 259 ILKDCSNLLTLPLDI---HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

Query: 120 SLPLCLTNLTSL 131
                     + 
Sbjct: 316 LDQHRPVARPAE 327

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (261), Expect = 7e-24
 Identities = 72/478 (15%), Positives = 153/478 (32%), Gaps = 57/478 (11%)

Query: 28  SELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQEL 86
            +L     +L++S + +++  +       L  L+ L I  N ++   +        L+ L
Sbjct: 17  KDLSQKTTILNISQNYISE--LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74

Query: 87  NVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLC--LTNLTSLQVLDVSYNQLTES 144
           +++ NKL +   +     V L+ L +  N    +LP+C    N++ L+ L +S   L   
Sbjct: 75  DLSHNKLVK---ISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLE-K 129

Query: 145 ISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQ 204
            S  P+  L   + L++    +      E L + +        I   T   ++ +     
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL---HIVFPTNKEFHFILDVSV 186

Query: 205 LTSISLS-----------GYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCL 253
            T  +L                  +    L     L N  L+++  +      ++ +   
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 254 QKLATLDVSNNFFQG--------------------HIPVEIGTYLPGLMHLNLSRNAFND 293
             +    +SN   QG                     +  ++  +    ++   S     +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 294 LSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPF 353
            + +  +        ++    +L  +NN +   +      L E+  + L  N L      
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 354 CLVNTALSEGYY----------DAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMS 403
             + T +               D          +      S N           +   + 
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR--CLPPRIK 424

Query: 404 GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461
            +DL  NK+   IP Q+  L  ++ LN++ N L       F  L  ++ + L  N   
Sbjct: 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.1 bits (213), Expect = 6e-18
 Identities = 57/438 (13%), Positives = 130/438 (29%), Gaps = 70/438 (15%)

Query: 59  HLQELYIRDNDLRDSLLGA-WQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDL 117
               L I  N + +         + L+ L ++ N++             L  L + +N L
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 118 SGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSN 177
              +        +L+ LD+S+N             ++ ++ L LS  H +   S+ P+++
Sbjct: 82  V-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAH 137

Query: 178 LSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHL 237
           L+  K     +  ET              + SL           F+        A+L   
Sbjct: 138 LNISKVLL--VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 238 NLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYN 297
           N+     +                        +          L ++  + N+F  +   
Sbjct: 196 NIKCVLEDNKCS------------YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243

Query: 298 RLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVN 357
               ++  +      IS + L       +       LK + +  +  +            
Sbjct: 244 VWHTTVWYF-----SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF---------- 288

Query: 358 TALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIP 417
                                    F  +          +I ++M+  + + +       
Sbjct: 289 ------------------------GFPQSYIY-------EIFSNMNIKNFTVSGTRMVHM 317

Query: 418 TQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLI----VLTTL 473
                ++    L+ S+N LT T+     +L ++E+L L  N L  ++ ++      + +L
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSL 376

Query: 474 AVFRVAYNNLSGKIPDRV 491
               ++ N++S       
Sbjct: 377 QQLDISQNSVSYDEKKGD 394

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 56/303 (18%), Positives = 104/303 (34%), Gaps = 27/303 (8%)

Query: 3   EFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILD-QGFCQLVHLQ 61
           E  N++ ++ D       +   ++ +     L  L+L+      N+ +          + 
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPK--LSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 62  ELYIRDNDLRDSLLGA---WQTTSLQEL---NVASNKLTRNFPLGLCELVLLRELYIDNN 115
              I +  L+  L      +  TSL+ L    V S+               +       +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 116 DLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-IPISLEP 174
                  LC + ++    LD S N LT          LT +E LIL  N  + +    E 
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEM 369

Query: 175 LSNLSKLK----AFNGEIYLETESHYNSLTPKFQLTSISLSGYR-DDGTFPKFLYHQHDL 229
            + +  L+    + N   Y E +   +       L S+++S     D  F         +
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTK---SLLSLNMSSNILTDTIFRCLP---PRI 423

Query: 230 KNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN 289
           K  DL    +    P  ++    L+ L  L+V++N  +  +P  I   L  L  + L  N
Sbjct: 424 KVLDLHSNKIK-SIPKQVVK---LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

Query: 290 AFN 292
            ++
Sbjct: 479 PWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 7e-12
 Identities = 52/374 (13%), Positives = 109/374 (29%), Gaps = 83/374 (22%)

Query: 4   FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKN------------TILD 51
            ++     +  ++   N  F  I+   + ++  L LS  +                 +  
Sbjct: 160 LQDFNTESL-HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218

Query: 52  QGFCQLVHLQELYIRDNDLRDSLLGAWQTT----SLQELNVASNKLTRNFPLGLCELVLL 107
                 + L  +    N     L   W TT    S+  + +      R+F      L  L
Sbjct: 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278

Query: 108 RELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ 167
               + ++             +++ + + + +     +       ++    L  SNN   
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLT 337

Query: 168 IPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQH 227
                E   +L++L+              N      QL  +S                  
Sbjct: 338 D-TVFENCGHLTELETLIL--------QMN------QLKELS------------------ 364

Query: 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLS 287
                      ++            ++ L  LD+S N           ++   L+ LN+S
Sbjct: 365 ----------KIAEMT-------TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 288 RNAFN--------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ 333
            N                 DL  N+++ SIP  + +L  +  L +A+N ++        +
Sbjct: 408 SNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466

Query: 334 LKEVRLIDLSHNNL 347
           L  ++ I L  N  
Sbjct: 467 LTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.6 bits (147), Expect = 7e-10
 Identities = 61/383 (15%), Positives = 125/383 (32%), Gaps = 48/383 (12%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
           F   + LE+L +       +   ++I      +L+ L LS++       + + F  +  L
Sbjct: 65  FKFNQELEYLDLS------HNKLVKISCHPTVNLKHLDLSFNAF-DALPICKEFGNMSQL 117

Query: 61  QELYIRDNDLRDSLLGAWQTTSLQE--LNVASNKLTRNFPLGLCELVL--LRELYIDNND 116
           + L +    L  S +      ++ +  L +      +  P GL +     L  ++  N +
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 117 LSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-IPISLEPL 175
               L + +  + +L++ ++         S    +L        LSN     I  +    
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 176 SNLSKLKAFNGEIYLETESHYNSLTPKFQ--------LTSISLSGYRDDGTFPKFLYHQH 227
             + +L       Y    +        F+        L ++S+     D       Y   
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLA---TLDVSNNFFQGHIPVEIGTYLPGLMHL 284
              N ++ +  +SG     ++ + C  K++    LD SNN        E   +L  L  L
Sbjct: 298 IFSNMNIKNFTVSG---TRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETL 353

Query: 285 NLSRNAFN------------------DLSYNRLQGSIPNWI-DRLPQISYLLLANNYIEG 325
            L  N                     D+S N +              +  L +++N +  
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 326 EIPAQLCQLKEVRLIDLSHNNLS 348
            I   L     ++++DL  N + 
Sbjct: 414 TIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
           +    + +++S N ++    + I  L+++R L +SHN +       F   +++E LDLS+
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 458 NLLHGKIPQLIVLTTLAVFRVAYNNLS 484
           N L  KI        L    +++N   
Sbjct: 79  NKLV-KIS-CHPTVNLKHLDLSFNAFD 103

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.8 bits (246), Expect = 7e-22
 Identities = 77/474 (16%), Positives = 150/474 (31%), Gaps = 47/474 (9%)

Query: 28  SELMASLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQE 85
            +L    + LSLS    N  + L       L  L+ L +  N +R            L+ 
Sbjct: 48  KDLPPRTKALSLSQ---NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104

Query: 86  LNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLC--LTNLTSLQVLDVSYNQLTE 143
           L+V+ N+L  N       +  LR L +  ND    LP+C    NLT L  L +S  +   
Sbjct: 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR- 159

Query: 144 SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSL---- 199
                 L+ +  +    +  +     I      +L         +     S ++      
Sbjct: 160 ---QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216

Query: 200 ---TPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQ-- 254
                  QL++I L+                     +++  ++   +   +         
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 255 KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQIS 314
            +  L++ N      I  E  TY        L       +       S         +++
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYS----ETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 315 YLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPF----CLVNTALSEGYY----- 365
             +L+ +                  ++ + N  +    F     L               
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKN 391

Query: 366 -DAVAPTWDHASAPALSYFSPNGSPMGK-EETVQILTSMSGIDLSCNKLTGEIPTQIGYL 423
              VA    + S+      S N       + T     S+  ++LS N LTG +   +   
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--P 449

Query: 424 TRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL----HGKIPQLIVLTTL 473
            +++ L+L +N +  +IP   ++L+ ++ L+++ N L     G   +L  L  +
Sbjct: 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 95.3 bits (237), Expect = 9e-21
 Identities = 73/460 (15%), Positives = 160/460 (34%), Gaps = 63/460 (13%)

Query: 33  SLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASN 91
            LR+L LS++R+     LD   F     L+ L +  N L++  +      SL+ L+++ N
Sbjct: 77  ELRVLRLSHNRI---RSLDFHVFLFNQDLEYLDVSHNRLQN--ISCCPMASLRHLDLSFN 131

Query: 92  KLTRNFPLGLCE----LVLLRELYIDNNDLSGSLPLCLTNL-TSLQVLDVSYNQLTESIS 146
                  L +C+    L  L  L +          L + +L  S  +LD+    +    +
Sbjct: 132 DFDV---LPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET 188

Query: 147 SSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLT 206
            S  +  T++  L+   N          ++ L  L+  N ++  E      +   +    
Sbjct: 189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248

Query: 207 S--ISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLS-------GEFPNWLMPIHCLQKLA 257
              ++++    + T+   +          + +LN+         +   +      L+ L 
Sbjct: 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308

Query: 258 TLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN----------------DLSYNRLQG 301
              V N  F       + +    +    LS +                   + + N    
Sbjct: 309 IEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367

Query: 302 SIPNWIDRLPQISYLLLANNYIE--GEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTA 359
           S+      L ++  L+L  N ++   ++      +  +  +D+S N+L+ H        A
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427

Query: 360 LSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQ 419
            S                  +   + + + +       +   +  +DL  N++   IP  
Sbjct: 428 ES------------------ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKD 468

Query: 420 IGYLTRIRALNLSHNNLTGTIPI-TFSNLKQIESLDLSYN 458
           + +L  ++ LN++ N L  ++P   F  L  ++ + L  N
Sbjct: 469 VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.1 bits (182), Expect = 4e-14
 Identities = 60/330 (18%), Positives = 115/330 (34%), Gaps = 51/330 (15%)

Query: 4   FKNLEHLVMD--QMLVEVNTSFLQIVSELMASLRLLSLSYSRLN---KNTILDQGFCQLV 58
              L HL +   ++  E     +  +SEL     LL+++   +    K ++    F    
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 59  HLQELYIRDNDLRDSL---LGAWQTTSLQEL---NVASNKLTRNFPLGLCELVLLRELYI 112
            ++ L I +  + + +      +  T+L+ L   +V +     +          +    +
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 113 DNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-IPIS 171
             +D      +C  + +S   L+ + N  T+S+       L  ++ LIL  N  +     
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKV 395

Query: 172 LEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKN 231
                N+S L+  +           NSL                   + +       +  
Sbjct: 396 ALMTKNMSSLETLD--------VSLNSLNS---------------HAYDRTCAWAESILV 432

Query: 232 ADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF 291
            +LS   L+G     L P     K+  LD+ NN     IP ++ T+L  L  LN++ N  
Sbjct: 433 LNLSSNMLTGSVFRCLPP-----KVKVLDLHNNRIM-SIPKDV-THLQALQELNVASNQL 485

Query: 292 NDLSYNRLQGSIPNWIDRLPQISYLLLANN 321
             +             DRL  + Y+ L +N
Sbjct: 486 KSVP--------DGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 7e-12
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 17/173 (9%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
                +   L            F   V +  ++L+ L     + N      +      ++
Sbjct: 349 PPSPSSFTFLNFT------QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402

Query: 61  QELYIRDNDLRD------SLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDN 114
             L   D  L            AW   S+  LN++SN LT +    L     ++ L + N
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAW-AESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHN 459

Query: 115 NDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ 167
           N +  S+P  +T+L +LQ L+V+ NQL  S+       LTS++ + L +N + 
Sbjct: 460 NRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.4 bits (245), Expect = 9e-22
 Identities = 75/437 (17%), Positives = 121/437 (27%), Gaps = 133/437 (30%)

Query: 28  SELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLR---DSLLGAWQTTSLQ 84
           +   A  R      SR     +     C       L + ++ L    D L        + 
Sbjct: 10  AVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP-----AHIT 64

Query: 85  ELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTES 144
            L +  N LT   P    EL   R L +  N L+ SLP+    L  L +       L   
Sbjct: 65  TLVIPDNNLTS-LPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA- 118

Query: 145 ISSSPLMLLTSIEELILSNNHF-QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKF 203
                  L + + +L +  N    +P+    L  LS                 N L    
Sbjct: 119 -------LPSGLCKLWIFGNQLTSLPVLPPGLQELS--------------VSDNQLA--- 154

Query: 204 QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSN 263
                         + P        L      +  L+   P           L  L VS+
Sbjct: 155 --------------SLPALPSE---LCKLWAYNNQLT-SLPM------LPSGLQELSVSD 190

Query: 264 NFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYI 323
           N     +P         L  L    N            S+P     L     L+++ N +
Sbjct: 191 NQLA-SLPTLPS----ELYKLWAYNNRLT---------SLPALPSGL---KELIVSGNRL 233

Query: 324 EGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYF 383
              +P    +LKE   + +S N L          T+L                       
Sbjct: 234 T-SLPVLPSELKE---LMVSGNRL----------TSLPML-------------------- 259

Query: 384 SPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPIT 443
                           + +  + +  N+LT  +P  + +L+    +NL  N L+     T
Sbjct: 260 ---------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS---ERT 300

Query: 444 FSNLKQIESLDLSYNLL 460
              L++I S       +
Sbjct: 301 LQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.3 bits (237), Expect = 9e-21
 Identities = 71/345 (20%), Positives = 113/345 (32%), Gaps = 88/345 (25%)

Query: 4   FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQEL 63
             ++  LV+           L  +  L   LR L +S ++L   T L      L+ L   
Sbjct: 60  PAHITTLVIPDN-------NLTSLPALPPELRTLEVSGNQL---TSLPVLPPGLLELSIF 109

Query: 64  YIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPL 123
                 L          + L +L +  N+LT   P        L+EL + +N L+ SLP 
Sbjct: 110 SNPLTHLPALP------SGLCKLWIFGNQLTS-LP---VLPPGLQELSVSDNQLA-SLPA 158

Query: 124 CLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLK 182
             + L  L       NQLT S+        + ++EL +S+N    +P      S L KL 
Sbjct: 159 LPSELCKL---WAYNNQLT-SLPML----PSGLQELSVSDNQLASLPTLP---SELYKLW 207

Query: 183 AFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGE 242
           A+N           N LT                 + P        LK   +S   L+  
Sbjct: 208 AYN-----------NRLT-----------------SLPALP---SGLKELIVSGNRLT-S 235

Query: 243 FPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGS 302
            P          +L  L VS N     +P+       GL+ L         +  N+L   
Sbjct: 236 LPV------LPSELKELMVSGNRLT-SLPMLPS----GLLSL--------SVYRNQLT-R 275

Query: 303 IPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNL 347
           +P  +  L   + + L  N +       L ++            +
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSERTLQALREI---TSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.4 bits (206), Expect = 6e-17
 Identities = 79/467 (16%), Positives = 141/467 (30%), Gaps = 129/467 (27%)

Query: 72  DSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSL 131
           D++  AW+  +  E +    +      +  C       L +  + L+ +LP CL     +
Sbjct: 9   DAVWSAWRRAAPAEESR--GRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCL--PAHI 63

Query: 132 QVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLKAFNGEIYL 190
             L +  N LT S+ +        +  L +S N    +P+    L  LS           
Sbjct: 64  TTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTSLPVLPPGLLELSIF--------- 109

Query: 191 ETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPI 250
                 N LT    L ++                    L    +    L+   P      
Sbjct: 110 -----SNPLT---HLPALPSG-----------------LCKLWIFGNQLT-SLPV----- 138

Query: 251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL 310
                L  L VS+N     +P         L  L            N+L  S+P     L
Sbjct: 139 -LPPGLQELSVSDNQLA-SLPALPSE----LCKL--------WAYNNQLT-SLPMLPSGL 183

Query: 311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAP 370
                L +++N +   +P    +L +   +   +N L          T+L          
Sbjct: 184 ---QELSVSDNQLA-SLPTLPSELYK---LWAYNNRL----------TSLPA-------- 218

Query: 371 TWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALN 430
                                      + + +  + +S N+LT  +P     L     L 
Sbjct: 219 ---------------------------LPSGLKELIVSGNRLT-SLPVLPSELKE---LM 247

Query: 431 LSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIV-LTTLAVFRVAYNNLSGKIPD 489
           +S N LT ++P+  S L    SL +  N L  ++P+ ++ L++     +  N LS +   
Sbjct: 248 VSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTL 301

Query: 490 RVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTVTTEAYTENEEG 536
           +  +  T                 S   +   L     +      EG
Sbjct: 302 QALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREG 348

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 44/201 (21%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 3   EFKNLEHLVMDQM-----------LVEVNTSFLQIVS--ELMASLRLLSLSYSRLNKNTI 49
               L+ L +              L ++     Q+ S   L + L+ LS+S ++L     
Sbjct: 139 LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL---AS 195

Query: 50  LDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTR--NFPLGLCELVL- 106
           L     +L  L     R   L          + L+EL V+ N+LT     P  L EL++ 
Sbjct: 196 LPTLPSELYKLWAYNNRLTSLPALP------SGLKELIVSGNRLTSLPVLPSELKELMVS 249

Query: 107 -------------LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLL 153
                        L  L +  N L+  LP  L +L+S   +++  N L+E  +   L  +
Sbjct: 250 GNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE-RTLQALREI 307

Query: 154 TSIEELILSNNHFQIPISLEP 174
           TS          F +  +  P
Sbjct: 308 TSAPGYSGPIIRFDMAGASAP 328

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 27/168 (16%), Positives = 48/168 (28%), Gaps = 12/168 (7%)

Query: 24  LQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLR---DSLLGAWQT 80
           L  +  L + L+ L +S    N+ T L      L     L +  N L    +SL      
Sbjct: 233 LTSLPVLPSELKELMVSG---NRLTSLPMLPSGL---LSLSVYRNQLTRLPESL---IHL 283

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
           +S   +N+  N L+      L E+               +         +L +    +  
Sbjct: 284 SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLV 343

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI 188
                  +P        +   ++        L    N  K   F  +I
Sbjct: 344 PAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQI 391

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 62/284 (21%), Positives = 102/284 (35%), Gaps = 49/284 (17%)

Query: 20  NTSFLQIVSELMASLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLRDSLLGA- 77
           +     + + + +S   L L     NK   L  G F +L  L +L +  N L      + 
Sbjct: 16  SKGLTSVPTGIPSSATRLELES---NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72

Query: 78  --WQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCL-TNLTSLQVL 134
             + TTSL+ L+++ N +          L  L  L   +++L       +  +L +L  L
Sbjct: 73  SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131

Query: 135 DVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETES 194
           D+S+        +     L+S+E L ++ N FQ     +  + L  L      + L    
Sbjct: 132 DISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT----FLDL---- 182

Query: 195 HYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIH--- 251
                    QL  +S         F       + L +  L  LN+S    N    +    
Sbjct: 183 SQC------QLEQLS------PTAF-------NSLSS--LQVLNMSH---NNFFSLDTFP 218

Query: 252 --CLQKLATLDVSNNFFQGHIPVEIGTYLPG-LMHLNLSRNAFN 292
             CL  L  LD S N        +   + P  L  LNL++N F 
Sbjct: 219 YKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 61/287 (21%), Positives = 98/287 (34%), Gaps = 53/287 (18%)

Query: 82  SLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQL 141
           S  E+   S  LT   P G+        L +++N L          LT L  L +S N L
Sbjct: 8   SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 142 TE-SISSSPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLKAFNGEIYLETESHYNSL 199
           +     S      TS++ L LS N    +  +   L  L  L              ++  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL-------DF----QHS-- 111

Query: 200 TPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATL 259
                L  +S     +   F        +L   D+SH +    F       + L  L  L
Sbjct: 112 ----NLKQMS-----EFSVF----LSLRNLIYLDISHTHTRVAFNGIF---NGLSSLEVL 155

Query: 260 DVSNNFFQGHIPVEIGTYLPGLMHLNLSRN--------AFN--------DLSYNRLQGSI 303
            ++ N FQ +   +I T L  L  L+LS+         AFN        ++S+N      
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215

Query: 304 PNWIDRLPQISYLLLANNYIEGEIPAQLCQ--LKEVRLIDLSHNNLS 348
                 L  +  L  + N+I      Q  Q     +  ++L+ N+ +
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 39/254 (15%), Positives = 82/254 (32%), Gaps = 71/254 (27%)

Query: 232 ADLSHLNLSGEFPNWLMPIHC-----LQKLATLDVSNNFFQ-GHIPVEIGTYLPGLMHLN 285
           +  + L L     N L  +       L +L  L +S+N         +       L +L+
Sbjct: 28  SSATRLELES---NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 286 LSRN-------AFN--------DLSYNRLQGSIP--NWIDRLPQISYLLLANNYIEGEIP 328
           LS N        F         D  ++ L+  +   +    L  + YL +++ +      
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAF 142

Query: 329 AQLCQ-LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG 387
             +   L  + ++ ++ N+   +                                     
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFL----------------------------------- 167

Query: 388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSN 446
                 +    L +++ +DLS  +L  ++       L+ ++ LN+SHNN        +  
Sbjct: 168 -----PDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 447 LKQIESLDLSYNLL 460
           L  ++ LD S N +
Sbjct: 222 LNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 42/275 (15%), Positives = 89/275 (32%), Gaps = 74/275 (26%)

Query: 233 DLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN--- 289
             +   L+       +P         L++ +N  Q  +P  +   L  L  L+LS N   
Sbjct: 13  RCNSKGLTS------VPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 290 -------AFN--------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQ--LC 332
                  +          DLS+N +  ++ +    L Q+ +L   ++ ++ ++       
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFL 123

Query: 333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGK 392
            L+ +  +D+SH +                                              
Sbjct: 124 SLRNLIYLDISHTHTR-VAF---------------------------------------- 142

Query: 393 EETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIE 451
                 L+S+  + ++ N         I   L  +  L+LS   L    P  F++L  ++
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 452 SLDLSYNLLHGKIPQLI--VLTTLAVFRVAYNNLS 484
            L++S+N     +       L +L V   + N++ 
Sbjct: 203 VLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 34/241 (14%), Positives = 65/241 (26%), Gaps = 59/241 (24%)

Query: 249 PIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID 308
           P  C      +  ++      +P  I         L L  N    L +            
Sbjct: 2   PSRCSCSGTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDK------- 50

Query: 309 RLPQISYLLLANNYIE-GEIPAQLCQ-LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYD 366
            L Q++ L L++N +      +Q       ++ +DLS N +            +S  +  
Sbjct: 51  -LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV----------ITMSSNFLG 99

Query: 367 AVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTR 425
                                           L  +  +D   + L       +   L  
Sbjct: 100 --------------------------------LEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 426 IRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ--LIVLTTLAVFRVAYNNL 483
           +  L++SH +        F+ L  +E L ++ N             L  L    ++   L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 484 S 484
            
Sbjct: 188 E 188

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 7e-21
 Identities = 57/327 (17%), Positives = 117/327 (35%), Gaps = 54/327 (16%)

Query: 28  SELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQEL 86
            +L     LL L  +++    I D  F  L +L  L + +N +     GA      L+ L
Sbjct: 48  KDLPPDTALLDLQNNKIT--EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105

Query: 87  NVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTES-I 145
            ++ N+L    P  +     L+EL +  N+++         L  + V+++  N L  S I
Sbjct: 106 YLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162

Query: 146 SSSPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQ 204
            +     +  +  + +++ +   IP  L    +L++L       +L      N      +
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTEL-------HL----DGN------K 203

Query: 205 LTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLS----GEFPNWLMPIHCLQKLATLD 260
           +T +         +        ++L    LS  ++S    G   N          L  L 
Sbjct: 204 ITKVD------AASLKGL----NNLAKLGLSFNSISAVDNGSLAN-------TPHLRELH 246

Query: 261 VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLAN 320
           ++NN     +P  +      +  + L  N  + +  N      P +  +    S + L +
Sbjct: 247 LNNNKLV-KVPGGLAD-HKYIQVVYLHNNNISAIGSNDFCP--PGYNTKKASYSGVSLFS 302

Query: 321 NYIE-GEIPAQLCQ-LKEVRLIDLSHN 345
           N ++  EI     + +     + L + 
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 69/358 (19%), Positives = 118/358 (32%), Gaps = 84/358 (23%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
                L++ +NK+T         L  L  L + NN +S   P     L  L+ L +S NQ
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
           L E     P  +  +++EL +  N     +     + L+++      + L      N   
Sbjct: 112 LKE----LPEKMPKTLQELRVHENEITK-VRKSVFNGLNQMI----VVEL----GTN--- 155

Query: 201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWL--MPIHCLQKLAT 258
               L S  +     +G F         +K   LS++ ++      +  +P      L  
Sbjct: 156 ---PLKSSGIE----NGAF-------QGMKK--LSYIRIAD---TNITTIPQGLPPSLTE 196

Query: 259 LDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLL 318
           L +  N     +       L  L  L LS N+ + +    L           P +  L L
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--------TPHLRELHL 247

Query: 319 ANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAP 378
            NN +  ++P  L   K ++++ L +NN+S  I                           
Sbjct: 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIG-------------------------- 279

Query: 379 ALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLT-GEIPTQI-GYLTRIRALNLSHN 434
             + F P G             S SG+ L  N +   EI       +    A+ L + 
Sbjct: 280 -SNDFCPPGYNTK-------KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 53/275 (19%), Positives = 101/275 (36%), Gaps = 52/275 (18%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
           F     LE L +            ++  ++  +L+ L +  + +    +    F  L  +
Sbjct: 96  FAPLVKLERLYLS------KNQLKELPEKMPKTLQELRVHENEIT--KVRKSVFNGLNQM 147

Query: 61  QELYIRDNDLRDSLL--GAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDL 117
             + +  N L+ S +  GA+Q    L  + +A   +T   P GL     L EL++D N +
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKI 204

Query: 118 SGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-IPISLEPLS 176
           +      L  L +L  L +S+N ++ ++ +  L     + EL L+NN    +P  L    
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263

Query: 177 NLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSH 236
            +  +       YL    H N       +++I  + +   G   K          A  S 
Sbjct: 264 YIQVV-------YL----HNN------NISAIGSNDFCPPGYNTKK---------ASYSG 297

Query: 237 LNLSGEFPNWLMPI-------HCLQKLATLDVSNN 264
           ++L     N +           C+   A + + N 
Sbjct: 298 VSLFS---NPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 64/387 (16%), Positives = 122/387 (31%), Gaps = 121/387 (31%)

Query: 82  SLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQL 141
            L+ +  +   L +  P  L        L + NN ++        NL +L  L +  N++
Sbjct: 32  HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 142 TESISSSPLMLLTSIEELILSNNHF-QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
           +  IS      L  +E L LS N   ++P  +     L +L        +    H N   
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQEL-------RV----HEN--- 131

Query: 201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLD 260
              ++T +          F       + L    +  + L     N          L +  
Sbjct: 132 ---EITKVR------KSVF-------NGLNQ--MIVVELGT---N---------PLKSSG 161

Query: 261 VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLAN 320
           + N  FQG         +  L ++ ++              +IP  +   P ++ L L  
Sbjct: 162 IENGAFQG---------MKKLSYIRIADTNIT---------TIPQGL--PPSLTELHLDG 201

Query: 321 NYIEGEIPAQ-LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPA 379
           N I  ++ A  L  L  +  + LS N++S      + N +L+                  
Sbjct: 202 NKIT-KVDAASLKGLNNLAKLGLSFNSIS-----AVDNGSLAN----------------- 238

Query: 380 LSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTG- 438
                                 +  + L+ NKL  ++P  +     I+ + L +NN++  
Sbjct: 239 -------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278

Query: 439 -----TIPITFSNLKQIESLDLSYNLL 460
                  P   +       + L  N +
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 53/274 (19%), Positives = 94/274 (34%), Gaps = 72/274 (26%)

Query: 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLS 287
           DL+N  ++ +   G+F N       L+ L TL + NN     I       L  L  L LS
Sbjct: 58  DLQNNKITEIK-DGDFKN-------LKNLHTLILINNKIS-KISPGAFAPLVKLERLYLS 108

Query: 288 RN--------AFN-----DLSYNRLQGSIPNWIDRLPQISYLLLANNYI-EGEIPAQLCQ 333
           +N                 +  N +     +  + L Q+  + L  N +    I     Q
Sbjct: 109 KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 334 -LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGK 392
            +K++  I ++  N++  IP                                        
Sbjct: 169 GMKKLSYIRIADTNIT-TIP---------------------------------------- 187

Query: 393 EETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIE 451
                +  S++ + L  NK+T ++       L  +  L LS N+++     + +N   + 
Sbjct: 188 ---QGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 452 SLDLSYNLLHGKIPQ-LIVLTTLAVFRVAYNNLS 484
            L L+ N L  K+P  L     + V  +  NN+S
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 53/280 (18%), Positives = 85/280 (30%), Gaps = 72/280 (25%)

Query: 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLS 287
            L+    S L L        +P       A LD+ NN     I       L  L  L L 
Sbjct: 32  HLRVVQCSDLGLEK------VPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILI 84

Query: 288 RN--------AFN--------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQL 331
            N        AF          LS N+L+  +P        +  L +  N I     +  
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVF 141

Query: 332 CQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMG 391
             L ++ +++L  N L         ++ +  G                   F        
Sbjct: 142 NGLNQMIVVELGTNPLK--------SSGIENGA------------------FQG------ 169

Query: 392 KEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIE 451
                  +  +S I ++   +T  IP   G    +  L+L  N +T     +   L  + 
Sbjct: 170 -------MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLA 219

Query: 452 SLDLSYNLLHGKIPQ--LIVLTTLAVFRVAYNNLSGKIPD 489
            L LS+N +   +    L     L    +  N L  K+P 
Sbjct: 220 KLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
           +    + +DL  NK+T         L  +  L L +N ++   P  F+ L ++E L LS 
Sbjct: 50  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 458 NLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRV 491
           N L  ++P+  +  TL   RV  N ++ K+   V
Sbjct: 110 NQLK-ELPEK-MPKTLQELRVHENEIT-KVRKSV 140

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.5 bits (225), Expect = 6e-20
 Identities = 60/314 (19%), Positives = 101/314 (32%), Gaps = 61/314 (19%)

Query: 32  ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVAS 90
               LL L  + ++   +    F  L HL  L + +N +      A      LQ+L ++ 
Sbjct: 54  PDTTLLDLQNNDIS--ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 91  NKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTES------ 144
           N L    P  L     L EL I +N +        + L ++  +++  N L  S      
Sbjct: 112 NHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 145 ---------------ISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY 189
                          ++  P  L  ++ EL L +N  Q  I LE L   SKL      + 
Sbjct: 169 FDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA-IELEDLLRYSKLY----RLG 223

Query: 190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMP 249
           L     +N      Q+  I      ++G+          L+   L +  LS   P  L  
Sbjct: 224 L----GHN------QIRMI------ENGSL----SFLPTLRELHLDNNKLS-RVPAGL-- 260

Query: 250 IHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSI--PNWI 307
              L+ L  + +  N       V +  + P    +  +      L  N +      P   
Sbjct: 261 -PDLKLLQVVYLHTNNITK---VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 308 DRLPQISYLLLANN 321
             +     +   N 
Sbjct: 317 RCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 56/293 (19%), Positives = 94/293 (32%), Gaps = 64/293 (21%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
                L++ +N ++         L  L  L + NN +S       + L  LQ L +S N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
           L       P  L +S+ EL + +N  +  +     S L  +      I +      N   
Sbjct: 114 LV----EIPPNLPSSLVELRIHDNRIRK-VPKGVFSGLRNMN----CIEM----GGN--- 157

Query: 201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWL--MPIHCLQKLAT 258
               L +         G F         LK   L++L +S      L  +P    + L  
Sbjct: 158 ---PLENSGFE----PGAF-------DGLK---LNYLRISE---AKLTGIPKDLPETLNE 197

Query: 259 LDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN--------AFN--------DLSYNRLQGS 302
           L + +N  Q  I +E       L  L L  N        + +         L  N+L   
Sbjct: 198 LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 303 IPNWIDRLPQISYLLLANNYIEGEIPAQ-------LCQLKEVRLIDLSHNNLS 348
           +P  +  L  +  + L  N I  ++            +      I L +N + 
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 58/362 (16%), Positives = 115/362 (31%), Gaps = 98/362 (27%)

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166
           LR +   +  L  ++P  ++      +LD+  N ++  +       L  +  L+L NN  
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 167 QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQ 226
              I  +  S L KL+    ++Y+      N       L  I                  
Sbjct: 91  SK-IHEKAFSPLRKLQ----KLYIS----KN------HLVEI------PPNLPSS----- 124

Query: 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNL 286
             L    +    +             L+ +  +++  N  + +   E G        L L
Sbjct: 125 --LVELRIHDNRIRKVPKGVF---SGLRNMNCIEMGGNPLE-NSGFEPGA----FDGLKL 174

Query: 287 SRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQ-LCQLKEVRLIDLSHN 345
           +   +  +S  +L   IP   D    ++ L L +N I+  I  + L +  ++  + L HN
Sbjct: 175 N---YLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN 227

Query: 346 NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
            +       + N +LS                                     L ++  +
Sbjct: 228 QIR-----MIENGSLSF------------------------------------LPTLREL 246

Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPIT-------FSNLKQIESLDLSYN 458
            L  NKL+  +P  +  L  ++ + L  NN+T  + +                 + L  N
Sbjct: 247 HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 459 LL 460
            +
Sbjct: 305 PV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 55/276 (19%), Positives = 97/276 (35%), Gaps = 51/276 (18%)

Query: 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLS 287
            L+    S L L        +P         LD+ NN     +  +    L  L  L L 
Sbjct: 34  HLRVVQCSDLGLKA------VPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLV 86

Query: 288 RN--------AFN--------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQL 331
            N        AF+         +S N L   IP   +    +  L + +N I  ++P  +
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIR-KVPKGV 142

Query: 332 CQ-LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPM 390
              L+ +  I++  N L         N+    G +D +   +   S   L+    +    
Sbjct: 143 FSGLRNMNCIEMGGNPLE--------NSGFEPGAFDGLKLNYLRISEAKLTGIPKD---- 190

Query: 391 GKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQ 449
                  +  +++ + L  NK+   I  +     +++  L L HN +      + S L  
Sbjct: 191 -------LPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 450 IESLDLSYNLLHGKIPQ-LIVLTTLAVFRVAYNNLS 484
           +  L L  N L  ++P  L  L  L V  +  NN++
Sbjct: 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVAS 90
            + L  L L ++++    I +     L  L+EL++ +N L     G      LQ + + +
Sbjct: 216 YSKLYRLGLGHNQIR--MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT 273

Query: 91  NKLTR------NFPLGLCELVLLRELYIDNNDLSGSL--PLCLTNLTSLQVLDVSYNQ 140
           N +T+             +      + + NN +      P     +T    +     +
Sbjct: 274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.2 bits (224), Expect = 2e-19
 Identities = 61/280 (21%), Positives = 105/280 (37%), Gaps = 46/280 (16%)

Query: 20  NTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-W 78
                ++   + ++ R L+L  + +    I    F  L HL+ L +  N +R   +GA  
Sbjct: 63  RRGLSEVPQGIPSNTRYLNLMENNIQ--MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120

Query: 79  QTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVS- 137
              SL  L +  N LT         L  LREL++ NN +          + SL  LD+  
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 138 YNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYN 197
             +L   IS      L +++ L L   + +    +  L+ L  L+    E+ +      N
Sbjct: 181 LKKLE-YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLE----ELEM----SGN 228

Query: 198 SLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIH-----C 252
                     I        G+F       H L +  L  L +     + +  I       
Sbjct: 229 ------HFPEIR------PGSF-------HGLSS--LKKLWVMN---SQVSLIERNAFDG 264

Query: 253 LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN 292
           L  L  L++++N     +P ++ T L  L+ L+L  N +N
Sbjct: 265 LASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.6 bits (212), Expect = 7e-18
 Identities = 55/260 (21%), Positives = 86/260 (33%), Gaps = 53/260 (20%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
           ++ + LN+  N +          L  L  L +  N +          L SL  L++  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
           LT  I S     L+ + EL L NN  +  I     + +  L      + L          
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLM----RLDL---GELK--- 182

Query: 201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIH---CLQKLA 257
              +L  IS      +G F         L N  L +LNL       +  +     L  L 
Sbjct: 183 ---KLEYIS------EGAF-------EGLFN--LKYLNLGM---CNIKDMPNLTPLVGLE 221

Query: 258 TLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN--------AFN--------DLSYNRLQG 301
            L++S N F   I       L  L  L +  +        AF+        +L++N L  
Sbjct: 222 ELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280

Query: 302 SIPNWIDRLPQISYLLLANN 321
              +    L  +  L L +N
Sbjct: 281 LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.2 bits (180), Expect = 6e-14
 Identities = 61/335 (18%), Positives = 106/335 (31%), Gaps = 108/335 (32%)

Query: 129 TSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEP--LSNLSKLKAFNG 186
           ++ + L++  N +   I +     L  +E L L  N  +    +E    + L+ L     
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR---QIEVGAFNGLASLN---- 126

Query: 187 EIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNW 246
            + L      N       LT I        G F                           
Sbjct: 127 TLEL----FDN------WLTVIP------SGAF--------------------------- 143

Query: 247 LMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW 306
                 L KL  L + NN  +  IP      +P LM L+L           +L+      
Sbjct: 144 ----EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL-------KKLEYISEGA 191

Query: 307 IDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYD 366
            + L  + YL L    I+ ++P  L  L  +  +++S N+    I               
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIR-------------- 234

Query: 367 AVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRI 426
                               GS  G       L+S+  + +  ++++         L  +
Sbjct: 235 -------------------PGSFHG-------LSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 427 RALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461
             LNL+HNNL+      F+ L+ +  L L +N  +
Sbjct: 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 51/277 (18%), Positives = 91/277 (32%), Gaps = 46/277 (16%)

Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
            +       +   LS E P  +           L++  N  Q  I  +   +L  L  L 
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIPS-----NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQ 105

Query: 286 LSRN--------AFN--------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPA 329
           L RN        AFN        +L  N L        + L ++  L L NN IE  IP+
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPS 164

Query: 330 Q-LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGS 388
               ++  +  +DL       +I       A                    L Y +    
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYIS----EGAF--------------EGLFNLKYLNLGMC 206

Query: 389 PMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLK 448
            +     +  L  +  +++S N      P     L+ ++ L + ++ ++      F  L 
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266

Query: 449 QIESLDLSYNLLHGKIPQLIV--LTTLAVFRVAYNNL 483
            +  L+L++N L   +P  +   L  L    + +N  
Sbjct: 267 SLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 36/237 (15%), Positives = 68/237 (28%), Gaps = 59/237 (24%)

Query: 251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL 310
            C  + + +  +       +P  I        +LNL  N    +  +  +         L
Sbjct: 51  SCSNQFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRH--------L 98

Query: 311 PQISYLLLANNYIEGEIPAQ-LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVA 369
             +  L L  N I  +I       L  +  ++L  N L+  IP                 
Sbjct: 99  HHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIP----------------- 139

Query: 370 PTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRA 428
                                      + L+ +  + L  N +   IP+     +  +  
Sbjct: 140 -----------------------SGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMR 175

Query: 429 LNLSHNNLTGTIPI-TFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
           L+L        I    F  L  ++ L+L    +   +P L  L  L    ++ N+  
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
           I ++   ++L  N +         +L  +  L L  N++       F+ L  + +L+L  
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 458 NLLHGKIPQ--LIVLTTLAVFRVAYNNLSGKIPDRV 491
           N L   IP      L+ L    +  N +   IP   
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.9 bits (218), Expect = 1e-18
 Identities = 62/269 (23%), Positives = 109/269 (40%), Gaps = 48/269 (17%)

Query: 32  ASLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVA 89
            + RLL+L     N+  I+    F  L HL+ L +  N +R   +GA     +L  L + 
Sbjct: 64  TNTRLLNLHE---NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 90  SNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVS-YNQLTESISSS 148
            N+LT         L  L+EL++ NN +          + SL+ LD+    +L+  IS  
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEG 179

Query: 149 PLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSI 208
               L+++  L L+  + +    +  L+ L KL     E+ L      N       L++I
Sbjct: 180 AFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLD----ELDL----SGN------HLSAI 222

Query: 209 SLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIH-----CLQKLATLDVSN 263
                   G+F         L +  L  L +     + +  I       LQ L  +++++
Sbjct: 223 R------PGSFQ-------GLMH--LQKLWMIQ---SQIQVIERNAFDNLQSLVEINLAH 264

Query: 264 NFFQGHIPVEIGTYLPGLMHLNLSRNAFN 292
           N     +P ++ T L  L  ++L  N +N
Sbjct: 265 NNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 56/260 (21%), Positives = 95/260 (36%), Gaps = 53/260 (20%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
           T+ + LN+  N++          L  L  L +  N +          L +L  L++  N+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
           LT +I +   + L+ ++EL L NN  +  I     + +  L+     + L          
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLR----RLDL---GELK--- 171

Query: 201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIH---CLQKLA 257
              +L+ IS      +G F         L N  L +LNL+      L  I     L KL 
Sbjct: 172 ---RLSYIS------EGAF-------EGLSN--LRYLNLAM---CNLREIPNLTPLIKLD 210

Query: 258 TLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN--------AFN--------DLSYNRLQG 301
            LD+S N     I       L  L  L + ++        AF+        +L++N L  
Sbjct: 211 ELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269

Query: 302 SIPNWIDRLPQISYLLLANN 321
              +    L  +  + L +N
Sbjct: 270 LPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 69/335 (20%), Positives = 110/335 (32%), Gaps = 108/335 (32%)

Query: 129 TSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI--PISLEPLSNLSKLKAFNG 186
           T+ ++L++  NQ+   I  +    L  +E L LS NH +     +   L+NL+ L     
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL----- 117

Query: 187 EIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNW 246
              L      N      +LT+I       +G F                           
Sbjct: 118 --EL----FDN------RLTTIP------NGAF--------------------------- 132

Query: 247 LMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW 306
                 L KL  L + NN  +  IP      +P L  L+L           RL       
Sbjct: 133 ----VYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL-------KRLSYISEGA 180

Query: 307 IDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYD 366
            + L  + YL LA   +  EIP  L  L ++  +DLS N+LS  I               
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLS-AIR-------------- 223

Query: 367 AVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRI 426
                                       + Q L  +  + +  +++          L  +
Sbjct: 224 --------------------------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 427 RALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461
             +NL+HNNLT      F+ L  +E + L +N  +
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 58/277 (20%), Positives = 95/277 (34%), Gaps = 46/277 (16%)

Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
            +          NL  E P+ +           L++  N  Q  I V    +L  L  L 
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGIST-----NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQ 94

Query: 286 LSRN--------AFN--------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPA 329
           LSRN        AFN        +L  NRL          L ++  L L NN IE  IP+
Sbjct: 95  LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPS 153

Query: 330 QL-CQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGS 388
               ++  +R +DL       +I       A                    L Y +    
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYIS----EGAF--------------EGLSNLRYLNLAMC 195

Query: 389 PMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLK 448
            + +   +  L  +  +DLS N L+   P     L  ++ L +  + +       F NL+
Sbjct: 196 NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255

Query: 449 QIESLDLSYNLLHGKIPQLIV--LTTLAVFRVAYNNL 483
            +  ++L++N L   +P  +   L  L    + +N  
Sbjct: 256 SLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 42/237 (17%), Positives = 71/237 (29%), Gaps = 59/237 (24%)

Query: 251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL 310
            C  + + +       +  +P  I         LNL  N    +  N  +         L
Sbjct: 40  SCSNQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKH--------L 87

Query: 311 PQISYLLLANNYIEGEIPAQ-LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVA 369
             +  L L+ N+I   I       L  +  ++L  N L+  IP                 
Sbjct: 88  RHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIP----------------- 128

Query: 370 PTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRA 428
                                        L+ +  + L  N +   IP+     +  +R 
Sbjct: 129 -----------------------NGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRR 164

Query: 429 LNLSHNNLTGTIPI-TFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
           L+L        I    F  L  +  L+L+   L  +IP L  L  L    ++ N+LS
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
           I T+   ++L  N++         +L  +  L LS N++       F+ L  + +L+L  
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 458 NLLHGKIPQ--LIVLTTLAVFRVAYNNLSGKIPDRV 491
           N L   IP    + L+ L    +  N +   IP   
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.9 bits (203), Expect = 5e-18
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 20  NTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRD-SLLGAW 78
            +S   I    M SL  ++L+   +   T    G     ++++L I +    + + +   
Sbjct: 32  QSSTANITEAQMNSLTYITLANINVTDLT----GIEYAHNIKDLTINNIHATNYNPIS-- 85

Query: 79  QTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY 138
             ++L+ L +    +T +    L  L  L  L I ++    S+   +  L  +  +D+SY
Sbjct: 86  GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 139 NQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFN 185
           N     I   PL  L  ++ L +  +          + +  KL    
Sbjct: 146 NGAITDI--MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLY 187

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 9e-10
 Identities = 31/188 (16%), Positives = 71/188 (37%), Gaps = 13/188 (6%)

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166
            +         S +  +    + SL  + ++   +T     + +    +I++L ++N H 
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHA 78

Query: 167 QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQ 226
                +  LSNL +L+    ++  +   + + LT    LT + +S    D +    +   
Sbjct: 79  TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT---SLTLLDISHSAHDDSILTKINTL 135

Query: 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNL 286
             + + DLS+     +    +MP+  L +L +L++  +    +  +E     P L  L  
Sbjct: 136 PKVNSIDLSYNGAITD----IMPLKTLPELKSLNIQFDGVHDYRGIE---DFPKLNQLYA 188

Query: 287 SRNAFNDL 294
                   
Sbjct: 189 FSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 19/86 (22%), Positives = 40/86 (46%)

Query: 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
           L+++  + +    +T +    +  LT +  L++SH+    +I    + L ++ S+DLSYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 459 LLHGKIPQLIVLTTLAVFRVAYNNLS 484
                I  L  L  L    + ++ + 
Sbjct: 147 GAITDIMPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 27/206 (13%), Positives = 59/206 (28%), Gaps = 57/206 (27%)

Query: 253 LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQ 312
           +  L  + ++N        +E   Y   +  L ++     + +           I  L  
Sbjct: 43  MNSLTYITLANINVTDLTGIE---YAHNIKDLTINNIHATNYNP----------ISGLSN 89

Query: 313 ISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTW 372
           +  L +    +  +    L  L  + L+D+SH+     I   +                 
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT--------------- 134

Query: 373 DHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLS 432
                                     L  ++ IDLS N    +I   +  L  +++LN+ 
Sbjct: 135 --------------------------LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQ 167

Query: 433 HNNLTGTIPITFSNLKQIESLDLSYN 458
            + +     I   +  ++  L     
Sbjct: 168 FDGVHDYRGI--EDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
             ++  + ++    T   P  I  L+ +  L +   ++T       S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 459 LL-HGKIPQLIVLTTLAVFRVAYNNLSGKI 487
                 + ++  L  +    ++YN     I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
           + S++ I L+   +T ++ T I Y   I+ L +++ + T   PI  S L  +E L +   
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMGK 98

Query: 459 LLHG-KIPQLIVLTTLAVFRVAYNNLSGKIPD 489
            +   KIP L  LT+L +  ++++     I  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.7 bits (214), Expect = 5e-18
 Identities = 59/266 (22%), Positives = 103/266 (38%), Gaps = 53/266 (19%)

Query: 35  RLLSLSYSRLNKNTILD-QGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKL 93
                    L K ++ D     +L  + ++   ++D++  + G     ++ +L +  NKL
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKL 77

Query: 94  TRNFPLGLCELVLLRELYIDNN---DLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPL 150
           T   PL    L  L  L++D N   DLS      L +L  L+ L + +N ++  I  + L
Sbjct: 78  TDIKPLT--NLKNLGWLFLDENKIKDLSS-----LKDLKKLKSLSLEHNGIS-DI--NGL 127

Query: 151 MLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISL 210
           + L  +E L L NN  +I   +  LS L+KL      + LE     N      Q++ I  
Sbjct: 128 VHLPQLESLYLGNN--KI-TDITVLSRLTKLD----TLSLE----DN------QISDIV- 169

Query: 211 SGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHI 270
                       L     L+N  LS  ++S      L  +  L+ L  L++ +       
Sbjct: 170 -----------PLAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDVLELFSQ----EC 209

Query: 271 PVEIGTYLPGLMHLNLSRNAFNDLSY 296
             +   +   L+  N  +N    L  
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSLVT 235

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.7 bits (201), Expect = 2e-16
 Identities = 47/252 (18%), Positives = 95/252 (37%), Gaps = 28/252 (11%)

Query: 3   EFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILD-QGFCQLVHLQ 61
           E  +++ ++ +   ++ +   +Q     + ++  L L+      N + D +    L +L 
Sbjct: 41  ELNSIDQIIANNSDIK-SVQGIQ----YLPNVTKLFLNG-----NKLTDIKPLTNLKNLG 90

Query: 62  ELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSL 121
            L++ +N ++D L        L+ L++  N ++    L    L  L  LY+ NN ++   
Sbjct: 91  WLFLDENKIKD-LSSLKDLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGNNKITDIT 147

Query: 122 PLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKL 181
            L  + LT L  L +  NQ++      PL  LT ++ L LS NH      L  L+ L  L
Sbjct: 148 VL--SRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNL 199

Query: 182 KAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTF--PKFLYHQHDLKNADLSHLNL 239
                          N  +      ++  +    DG+   P+ +    D +  ++     
Sbjct: 200 DVLELFSQECLNKPINHQSNLVVPNTVKNT----DGSLVTPEIISDDGDYEKPNVKWHLP 255

Query: 240 SGEFPNWLMPIH 251
                   +   
Sbjct: 256 EFTNEVSFIFYQ 267

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 1e-14
 Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 56/275 (20%)

Query: 83  LQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLT 142
           + E    S  + + FP          +  +    ++ ++      L S+  +  + + + 
Sbjct: 1   MGETITVSTPIKQIFPD--DAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK 56

Query: 143 ESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPK 202
              S   +  L ++ +L L+ N  ++   ++PL+NL  L      ++L      N     
Sbjct: 57  ---SVQGIQYLPNVTKLFLNGN--KL-TDIKPLTNLKNLG----WLFL----DEN----- 97

Query: 203 FQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVS 262
            ++  +S             L     LK+  L H  +S      +  +  L +L +L + 
Sbjct: 98  -KIKDLS------------SLKDLKKLKSLSLEHNGISD-----INGLVHLPQLESLYLG 139

Query: 263 NNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNY 322
           NN       +     L  L  L+L  N  +D+            +  L ++  L L+ N+
Sbjct: 140 NNKITDITVLS---RLTKLDTLSLEDNQISDIVP----------LAGLTKLQNLYLSKNH 186

Query: 323 IEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVN 357
           I  ++ A L  LK + +++L              N
Sbjct: 187 IS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSN 219

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 9e-11
 Identities = 53/356 (14%), Positives = 103/356 (28%), Gaps = 123/356 (34%)

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166
           + E    +  +    P            ++    +T    +     L SI+++I +N+  
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI 55

Query: 167 QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQ 226
           +   S++ +  L  +     +++L    + N      +LT I                  
Sbjct: 56  K---SVQGIQYLPNVT----KLFL----NGN------KLTDIK----------------- 81

Query: 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIP-VEIGTYLPGLMHLN 285
                                 P+  L+ L  L +  N     I  +     L  L  L+
Sbjct: 82  ----------------------PLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLS 115

Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
           L  N  +D++           +  LPQ+  L L NN I  +I   L +L ++  + L  N
Sbjct: 116 LEHNGISDING----------LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDN 163

Query: 346 NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
            +S                                               +  LT +  +
Sbjct: 164 QIS-------------------------------------------DIVPLAGLTKLQNL 180

Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461
            LS N ++ ++   +  L  +  L L             SNL    ++  +   L 
Sbjct: 181 YLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 46/259 (17%), Positives = 93/259 (35%), Gaps = 63/259 (24%)

Query: 232 ADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF 291
           A+    NL  +     +  + L  +  +  +N+  +    ++   YLP +  L L+ N  
Sbjct: 21  AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLFLNGNKL 77

Query: 292 NDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHI 351
            D+            +  L  + +L L  N I+ ++ + L  LK+++ + L HN +S   
Sbjct: 78  TDIKP----------LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS--- 122

Query: 352 PFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNK 411
                                                       +  L  +  + L  NK
Sbjct: 123 ----------------------------------------DINGLVHLPQLESLYLGNNK 142

Query: 412 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLT 471
           +T +I   +  LT++  L+L  N ++  +P   + L ++++L LS N +   +  L  L 
Sbjct: 143 IT-DITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRALAGLK 197

Query: 472 TLAVFRVAYNNLSGKIPDR 490
            L V  +       K  + 
Sbjct: 198 NLDVLELFSQECLNKPINH 216

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.7 bits (131), Expect = 5e-08
 Identities = 52/329 (15%), Positives = 103/329 (31%), Gaps = 81/329 (24%)

Query: 141 LTESISSS-------PLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETE 193
           + E+I+ S       P        +  L        ++   L+++ ++ A N +I     
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI----- 55

Query: 194 SHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCL 253
                        S+              + +  ++    L+   L+      + P+  L
Sbjct: 56  ------------KSVQ------------GIQYLPNVTKLFLNGNKLTD-----IKPLTNL 86

Query: 254 QKLATLDVSNNFFQGHIP-VEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQ 312
           + L  L +  N     I  +     L  L  L+L  N  +D++           +  LPQ
Sbjct: 87  KNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGISDING----------LVHLPQ 132

Query: 313 ISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTW 372
           +  L L NN I  +I   L +L ++  + L  N +S  I      T L   Y        
Sbjct: 133 LESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLY-------- 181

Query: 373 DHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLS 432
              S   +S                 L ++  ++L   +   +       L     +  +
Sbjct: 182 --LSKNHISDLRALAG----------LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 433 HNNLTGTIPITFSNLKQIESLDLSYNLLH 461
             +L    P   S+    E  ++ ++L  
Sbjct: 230 DGSL--VTPEIISDDGDYEKPNVKWHLPE 256

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.4 bits (209), Expect = 8e-18
 Identities = 53/265 (20%), Positives = 96/265 (36%), Gaps = 32/265 (12%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVASN 91
           +L+ L L+ + +N  TI +  F  L  L+ L +  N L +         +SL  LN+  N
Sbjct: 77  NLQALVLTSNGIN--TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134

Query: 92  KLTRNFPLGL-CELVLLRELYIDNNDLSGSLPL-CLTNLTSLQVLDVSYNQLTESISSSP 149
                    L   L  L+ L + N D    +       LT L+ L++  + L  S     
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKS 193

Query: 150 LMLLTSIEELILSNNHFQI--PISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTS 207
           L  + ++  LIL      +   I ++  S++  L           E     L   F  + 
Sbjct: 194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL-----------ELRDTDLD-TFHFSE 241

Query: 208 ISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQ 267
           +S       G     +  +   +N  ++  +L          ++ +  L  L+ S N  +
Sbjct: 242 LS------TGETNSLI-KKFTFRNVKITDESLFQVMKL----LNQISGLLELEFSRNQLK 290

Query: 268 GHIPVEIGTYLPGLMHLNLSRNAFN 292
             +P  I   L  L  + L  N ++
Sbjct: 291 S-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 5e-17
 Identities = 63/303 (20%), Positives = 112/303 (36%), Gaps = 48/303 (15%)

Query: 28  SELMASLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLRDSLLGAWQT-TSLQE 85
           S L  +++ L LS    N+ T +      + V+LQ L +  N +      ++ +  SL+ 
Sbjct: 48  SGLTEAVKSLDLSN---NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104

Query: 86  LNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLP--LCLTNLTSLQVLDVSYNQLT 142
           L+++ N L+ N      + L  L  L +  N    +L      ++LT LQ+L V      
Sbjct: 105 LDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTF 162

Query: 143 ESISSSPLMLLTSIEELILSNNHFQI--PISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
             I       LT +EEL +  +  Q   P SL+ + N+S L        L    H     
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL-------IL----HMK--- 208

Query: 201 PKFQLTSISLSGYRDDGTFPKFLYHQH-DLKNADLSHLNLSGEFPNWLMPIHCLQKLATL 259
              Q   +       +         +  +L++ DL   + S         +        +
Sbjct: 209 ---QHILLL------EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259

Query: 260 DVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI-DRLPQISYLLL 318
            +++      + +     + GL+ L  SRN            S+P+ I DRL  +  + L
Sbjct: 260 KITDESLFQVMKLL--NQISGLLELEFSRNQLK---------SVPDGIFDRLTSLQKIWL 308

Query: 319 ANN 321
             N
Sbjct: 309 HTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.7 bits (202), Expect = 6e-17
 Identities = 57/342 (16%), Positives = 110/342 (32%), Gaps = 88/342 (25%)

Query: 129 TSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEP--LSNLSKLKAFNG 186
            +++ LD+S N++T  IS+S L    +++ L+L++N      ++E    S+L  L+    
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLE---- 103

Query: 187 EIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNW 246
            + L     YN       L+++S         F         L +  L+ LNL G   N 
Sbjct: 104 HLDL----SYN------YLSNLS------SSWF-------KPLSS--LTFLNLLG---NP 135

Query: 247 LMPI------HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQ 300
              +        L KL  L V N      I  +    L  L  L +  +           
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE----- 190

Query: 301 GSIPNWIDRLPQISYLLLANNYIEGEIPAQL-CQLKEVRLIDLSHNNLSGHIPFCLVNTA 359
              P  +  +  +S+L+L        +          V  ++L   +L            
Sbjct: 191 ---PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT---------- 236

Query: 360 LSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQ 419
                                  F  +    G+  ++    +   + ++   L  ++   
Sbjct: 237 -----------------------FHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKL 272

Query: 420 IGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461
           +  ++ +  L  S N L       F  L  ++ + L  N   
Sbjct: 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 34/293 (11%)

Query: 58  VHLQELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLTRNFPLGL-CELVLLRELYIDNN 115
             ++ L + +N +        Q   +LQ L + SN +           L  L  L +  N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 116 DLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPL 175
            LS         L+SL  L++  N       +S    LT ++ L + N      I  +  
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 176 SNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLS 235
           + L+ L+    E+ +      +       L S            PK L    ++ +  L 
Sbjct: 171 AGLTFLE----ELEI----DAS------DLQSYE----------PKSLKSIQNVSHLILH 206

Query: 236 HLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS 295
                       +       +  L++ +         E+ T       +         ++
Sbjct: 207 MKQHI-LLLEIFV--DVTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRNVKIT 262

Query: 296 YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ-LKEVRLIDLSHNNL 347
              L   +   ++++  +  L  + N ++  +P  +   L  ++ I L  N  
Sbjct: 263 DESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 45/301 (14%), Positives = 80/301 (26%), Gaps = 81/301 (26%)

Query: 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN--------AFN--------DLSYNRL 299
           + +LD+SNN    +I          L  L L+ N        +F+        DLSYN L
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 300 QGSIPN-WIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNT 358
             ++ + W   L  +++L L  N             K +    L  +     I       
Sbjct: 113 S-NLSSSWFKPLSSLTFLNLLGN-----------PYKTLGETSLFSHLTKLQILRVGNMD 160

Query: 359 ALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPT 418
             ++                            G       LT +  +++  + L    P 
Sbjct: 161 TFTK---------------------IQRKDFAG-------LTFLEELEIDASDLQSYEPK 192

Query: 419 QIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRV 478
            +  +  +  L L        + I       +E L+L    L                  
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT---------------F 237

Query: 479 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSC--------DDNGLTTVTTEAY 530
            ++ LS    + + +  TF               L              N L +V    +
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297

Query: 531 T 531
            
Sbjct: 298 D 298

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.4 bits (206), Expect = 1e-17
 Identities = 46/260 (17%), Positives = 75/260 (28%), Gaps = 20/260 (7%)

Query: 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIG-TYLPGLMHLNL 286
            LK   +    +        + +  +  L  L + N    G  P  +     P L  LNL
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 287 SRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNN 346
              ++     +     +  W+   P +  L +A  +       Q+     +  +DLS N 
Sbjct: 129 RNVSWATR--DAWLAELQQWL--KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 347 LSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGID 406
             G                      +      AL                     + G+D
Sbjct: 185 ELGERGL----------ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

Query: 407 LSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP 465
           LS N L          + +++ +LNLS   L        + L     LDLSYN L    P
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR-NP 290

Query: 466 QLIVLTTLAVFRVAYNNLSG 485
               L  +    +  N    
Sbjct: 291 SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 1e-16
 Identities = 57/290 (19%), Positives = 96/290 (33%), Gaps = 46/290 (15%)

Query: 59  HLQELYIRDNDLRDSL--LGAWQTTSLQELNVASNKLTRNFPLGLCELVL---LRELYID 113
            L+ L  R +   D        ++ SL+ L V + ++      G   ++    L+EL ++
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 114 NNDLSGSLP-----LCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI 168
           N +++G+ P         +L  L + +VS+      ++     L   ++ L ++  H   
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 169 PISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHD 228
             S E +     L   +           N       L    L        FP        
Sbjct: 164 -FSCEQVRVFPALSTLDL--------SDNPE-----LGERGLISALCPLKFPT------- 202

Query: 229 LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSR 288
           L+   L +  +               +L  LD+S+N  +         +   L  LNLS 
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 289 NAFN-------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEG 325
                            DLSYNRL    P+  D LPQ+  L L  N    
Sbjct: 263 TGLKQVPKGLPAKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.8 bits (168), Expect = 8e-13
 Identities = 35/172 (20%), Positives = 60/172 (34%), Gaps = 13/172 (7%)

Query: 21  TSFLQIVSELMASLRLLSLSYSRLNK--NTILDQGFCQLVHLQELYIRDNDLRDSLLGAW 78
           T+   ++      L +L+L           + +        L+ L I      +      
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169

Query: 79  QT-TSLQELNVASNKLTRNFPLG--LCELVL--LRELYIDNN---DLSGSLPLCLTNLTS 130
           +   +L  L+++ N       L   LC L    L+ L + N      SG           
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229

Query: 131 LQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF-QIPISLEPLSNLSKL 181
           LQ LD+S+N L ++  +      + +  L LS     Q+P  L   + LS L
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVL 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 13/157 (8%)

Query: 20  NTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFC--QLVHLQELYIRDNDLRDSLLGA 77
           + +F      +  +L  L LS +       L    C  +   LQ L +R+  +       
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 78  WQT----TSLQELNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPLCLTNLTSLQ 132
                    LQ L+++ N L        C+    L  L +    L   +P  L     L 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLS 277

Query: 133 VLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIP 169
           VLD+SYN+L     +     L  +  L L  N F   
Sbjct: 278 VLDLSYNRLD---RNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 45/267 (16%), Positives = 81/267 (30%), Gaps = 26/267 (9%)

Query: 233 DLSHLNLSGEFPNWLMPIHCLQ------KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNL 286
           +    N S   P+W    +CL             +     +     ++G +   +  L+L
Sbjct: 11  ESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSL 70

Query: 287 SRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNN 346
            R                  +  +  +  L L N  + G  P  L +     L  L+  N
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 347 LSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGID 406
           +S       +               W       LS  +   S     E V++  ++S +D
Sbjct: 131 VSWATRDAWLAEL----------QQWLKPGLKVLS-IAQAHSLNFSCEQVRVFPALSTLD 179

Query: 407 LSCNKLTGEIP----TQIGYLTRIRALNLSHNNLT---GTIPITFSNLKQIESLDLSYNL 459
           LS N   GE              ++ L L +  +    G      +   Q++ LDLS+N 
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 460 LHGKIPQLI--VLTTLAVFRVAYNNLS 484
           L            + L    +++  L 
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 9/148 (6%)

Query: 1   FHEFKNLEHL-VMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNK-NTILDQGFCQLV 58
              F  L  L + D   +        +      +L++L+L  + +   + +        V
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 59  HLQELYIRDNDLRDSL--LGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNND 116
            LQ L +  N LRD+         + L  LN++   L +           L  L +  N 
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNR 285

Query: 117 LSGSLPLCLTNLTSLQVLDVSYNQLTES 144
           L    P     L  +  L +  N   +S
Sbjct: 286 LD-RNPSPDE-LPQVGNLSLKGNPFLDS 311

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.9 bits (200), Expect = 6e-17
 Identities = 48/282 (17%), Positives = 98/282 (34%), Gaps = 46/282 (16%)

Query: 36  LLSLSYSRLNKNTILD-QGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLT 94
           L +       K+ + D      L  +  L      +   + G     +L  L +  N++T
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQIT 76

Query: 95  RNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLT 154
              PL    L  + EL +  N L       +  L S++ LD++  Q+T+    +PL  L+
Sbjct: 77  DLAPLK--NLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD---VTPLAGLS 129

Query: 155 SIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYR 214
           +++ L L  N  QI  ++ PL+ L+ L+     + +             Q++ ++     
Sbjct: 130 NLQVLYLDLN--QI-TNISPLAGLTNLQ----YLSI----GNA------QVSDLT----- 167

Query: 215 DDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEI 274
                   L +   L         +S      + P+  L  L  + + NN      P+  
Sbjct: 168 -------PLANLSKLTTLKADDNKISD-----ISPLASLPNLIEVHLKNNQISDVSPLA- 214

Query: 275 GTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYL 316
                 L  + L+     +         +   + + P  + +
Sbjct: 215 --NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 56/338 (16%), Positives = 105/338 (31%), Gaps = 77/338 (22%)

Query: 124 CLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKA 183
               L +   +    + +T    +     L  I  L           ++E +  L+ L  
Sbjct: 14  PDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLI- 66

Query: 184 FNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEF 243
               + L      N      Q+T ++                  +L    ++ L LSG  
Sbjct: 67  ---GLEL----KDN------QITDLA---------------PLKNLTK--ITELELSGNP 96

Query: 244 PNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSI 303
              +  I  LQ + TLD+++       P+     L  L  L L  N   ++S        
Sbjct: 97  LKNVSAIAGLQSIKTLDLTSTQITDVTPLA---GLSNLQVLYLDLNQITNISP------- 146

Query: 304 PNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEG 363
              +  L  + YL + N  +    P  L  L ++  +    N +S   P           
Sbjct: 147 ---LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPL---------- 191

Query: 364 YYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYL 423
                      AS P L       + +     +   +++  + L+   +T +    + Y 
Sbjct: 192 -----------ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQ---PVFYN 237

Query: 424 TRIRALNLSHNNLTGTI-PITFSNLKQIESLDLSYNLL 460
             +   N+        I P T S+     S +L++NL 
Sbjct: 238 NNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLT 275

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 12/169 (7%)

Query: 36  LLSLSYSRLNKNTILD-QGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLT 94
           L +L    L+ N I +      L +LQ L I +  + D L      + L  L    NK++
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTLKADDNKIS 186

Query: 95  RNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLT 154
            +    L  L  L E+++ NN +S   PL   N ++L ++ ++       I++ P+    
Sbjct: 187 -DIS-PLASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTNQT----ITNQPVFYNN 238

Query: 155 SIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKF 203
           ++    +       PI+   +S+       +  +     S  N+++  F
Sbjct: 239 NLVVPNVVKGPSGAPIAPATISDNGTYA--SPNLTWNLTSFINNVSYTF 285

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 42/253 (16%), Positives = 86/253 (33%), Gaps = 63/253 (24%)

Query: 232 ADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF 291
           A+   +          +    L  + TL            +E   YL  L+ L L  N  
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELKDNQI 75

Query: 292 NDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHI 351
            DL+           +  L +I+ L L+ N ++  + A +  L+ ++ +DL+   ++   
Sbjct: 76  TDLAP----------LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVT 123

Query: 352 PFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNK 411
           P                                              L+++  + L  N+
Sbjct: 124 PL-------------------------------------------AGLSNLQVLYLDLNQ 140

Query: 412 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLT 471
           +T   P  +  LT ++ L++ +  ++   P+  +NL ++ +L    N +   I  L  L 
Sbjct: 141 ITNISP--LAGLTNLQYLSIGNAQVSDLTPL--ANLSKLTTLKADDNKIS-DISPLASLP 195

Query: 472 TLAVFRVAYNNLS 484
            L    +  N +S
Sbjct: 196 NLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 38/207 (18%)

Query: 278 LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEV 337
           L   + +   ++   D                L  I+ L      +   I   +  L  +
Sbjct: 18  LANAIKIAAGKSNVTDTVT----------QADLDGITTLSAFGTGVT-TIEG-VQYLNNL 65

Query: 338 RLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQ 397
             ++L  N ++   P                       +   ++    +G+P+     + 
Sbjct: 66  IGLELKDNQITDLAPL---------------------KNLTKITELELSGNPLKNVSAIA 104

Query: 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
            L S+  +DL+  ++T   P  +  L+ ++ L L  N +T   P+  + L  ++ L +  
Sbjct: 105 GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPL--AGLTNLQYLSIGN 160

Query: 458 NLLHGKIPQLIVLTTLAVFRVAYNNLS 484
             +   +  L  L+ L   +   N +S
Sbjct: 161 AQVS-DLTPLANLSKLTTLKADDNKIS 186

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.3 bits (203), Expect = 1e-16
 Identities = 61/321 (19%), Positives = 95/321 (29%), Gaps = 63/321 (19%)

Query: 37  LSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRD--SLLGAWQTTSLQELNVASNKLT 94
           LS +      +      F      ++  +   +  +  SLL         EL +    L+
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72

Query: 95  RNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLT 154
              P  L     +  L I  N L  SLP       SL+ LD   N+L+ ++      L  
Sbjct: 73  S-LPDNLPPQ--ITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE----LPA 120

Query: 155 SIEELILSNNHFQ-IPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGY 213
           S++ L + NN    +P   E  + L  + A             N LT             
Sbjct: 121 SLKHLDVDNNQLTMLP---ELPALLEYINA-----------DNNQLT------------- 153

Query: 214 RDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVE 273
                 P+       L+   + +  L+   P         + L  LDVS N  +  +P  
Sbjct: 154 ----MLPELPTS---LEVLSVRNNQLT-FLPELP------ESLEALDVSTNLLE-SLPAV 198

Query: 274 IGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ 333
                    H       F     NR+   IP  I  L     ++L +N +   I   L Q
Sbjct: 199 PV----RNHHS-EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 334 LKEVRLIDLSHNNLSGHIPFC 354
                         S      
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.9 bits (194), Expect = 2e-15
 Identities = 55/301 (18%), Positives = 89/301 (29%), Gaps = 74/301 (24%)

Query: 85  ELNVASNKLTR---NFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQL 141
             N   N ++    ++     +         + N+    L  CL  +     L ++   L
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL 71

Query: 142 TESISSSPLMLLTSIEELILSNNHF-QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
           +    S P  L   I  L ++ N    +P   E  ++L  L A +           N L+
Sbjct: 72  S----SLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACD-----------NRLS 113

Query: 201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLD 260
                            T P+       LK+ D+ +  L+   P           L  ++
Sbjct: 114 -----------------TLPELPAS---LKHLDVDNNQLT-MLPE------LPALLEYIN 146

Query: 261 VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN------------DLSYNRLQGSIPNWID 308
             NN     +P         L  L++  N               D+S N L+ S+P    
Sbjct: 147 ADNNQLT-MLPELPT----SLEVLSVRNNQLTFLPELPESLEALDVSTNLLE-SLPAVPV 200

Query: 309 RLPQ----ISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGY 364
           R         +     N I   IP  +  L     I L  N LS  I   L        Y
Sbjct: 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259

Query: 365 Y 365
           +
Sbjct: 260 H 260

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 1e-13
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 20/162 (12%)

Query: 24  LQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRD--SLLGAWQTT 81
           L ++ EL A L  ++      N+ T+L +       L+ L +R+N L     L       
Sbjct: 132 LTMLPELPALLEYINADN---NQLTMLPE---LPTSLEVLSVRNNQLTFLPELPE----- 180

Query: 82  SLQELNVASNKLTRNFPLGLCELVLLRE----LYIDNNDLSGSLPLCLTNLTSLQVLDVS 137
           SL+ L+V++N L  + P          E         N ++  +P  + +L     + + 
Sbjct: 181 SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 138 YNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLS 179
            N L+  I  S L   T+  +      +F +    +   +  
Sbjct: 239 DNPLSSRIRES-LSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.9 bits (176), Expect = 2e-13
 Identities = 54/386 (13%), Positives = 101/386 (26%), Gaps = 101/386 (26%)

Query: 120 SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLS 179
           S+ L + N  SL   +  YN ++    +         E+  L   +    +SL     ++
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 180 KLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNL 239
           +      E+ L    +  +L+                 + P  L  Q  +   +++   L
Sbjct: 60  QFS----ELQL----NRLNLS-----------------SLPDNLPPQ--ITVLEITQNAL 92

Query: 240 SGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN------- 292
               P           L  LD  +N     +P         L HL++  N          
Sbjct: 93  I-SLPELP------ASLEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLTMLPELPA 140

Query: 293 -----DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNL 347
                +   N+L   +P     L     L + NN +   +P     L+    +D+S N L
Sbjct: 141 LLEYINADNNQLT-MLPELPTSL---EVLSVRNNQLT-FLPELPESLEA---LDVSTNLL 192

Query: 348 SGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDL 407
              +P   V                                            +      
Sbjct: 193 E-SLPAVPVRN-------------------------------------HHSEETEIFFRC 214

Query: 408 SCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQL 467
             N++T  IP  I  L     + L  N L+ +      + +  +       +        
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

Query: 468 IVLTTLAVFRVAYNNLSGKIPDRVAQ 493
                  +               V+Q
Sbjct: 273 QNTLHRPLADAVTAWFPENKQSDVSQ 298

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.9 bits (176), Expect = 2e-13
 Identities = 57/333 (17%), Positives = 107/333 (32%), Gaps = 84/333 (25%)

Query: 233 DLSHLNLSGEFPN---WLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN 289
                 L GE  N    L+    + + + L ++       +P  +    P +  L +++N
Sbjct: 35  KWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVLEITQN 90

Query: 290 AFN------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEV 337
           A              D   NRL  ++P   +    + +L + NN +   +P     L+  
Sbjct: 91  ALISLPELPASLEYLDACDNRLS-TLP---ELPASLKHLDVDNNQLT-MLPELPALLEY- 144

Query: 338 RLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQ 397
             I+  +N L          T L E                                   
Sbjct: 145 --INADNNQL----------TMLPE----------------------------------- 157

Query: 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIES----L 453
           + TS+  + +  N+LT  +P     L     L++S N L  ++P         E      
Sbjct: 158 LPTSLEVLSVRNNQLT-FLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIFF 212

Query: 454 DLSYNLLHGKIPQLIV-LTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512
               N +   IP+ I+ L       +  N LS +I + ++Q  T + D +    +     
Sbjct: 213 RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ-TAQPDYHGPRIYFSMSD 270

Query: 513 LSKSCDDNGLTTVTTEAYTENEEGGSLIDMDSF 545
             ++     L    T  + EN++        +F
Sbjct: 271 GQQNTLHRPLADAVTAWFPENKQSDVSQIWHAF 303

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 24  LQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRD--SLLGAWQ-- 79
           L ++ EL  SL +LS+     N+ T L +       L+ L +  N L    ++       
Sbjct: 152 LTMLPELPTSLEVLSVRN---NQLTFLPE---LPESLEALDVSTNLLESLPAVPVRNHHS 205

Query: 80  TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVL----- 134
             +        N++T   P  +  L     + +++N LS  +   L+  T+         
Sbjct: 206 EETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264

Query: 135 -----------------DVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSN 177
                            D       E+  S    +  + E    +N        L    +
Sbjct: 265 YFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVS 324

Query: 178 LSKLKAFNGEI 188
                 F  ++
Sbjct: 325 ARNTSGFREQV 335

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 47/276 (17%), Positives = 85/276 (30%), Gaps = 60/276 (21%)

Query: 20  NTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ 79
                 +   + A+ + + L  +R++   +    F    +L  L++  N L      A+ 
Sbjct: 20  QQGLQAVPVGIPAASQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 80  T-TSLQELNVASNKLTRNFPLG-LCELVLLRELYIDNNDLSGSLPL-CLTNLTSLQVLDV 136
               L++L+++ N   R+        L  L  L++D   L   L       L +LQ L +
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYL 136

Query: 137 SYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHY 196
             N L  ++       L ++  L L  N     +       L  L      + L    H 
Sbjct: 137 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLD----RLLL----HQ 186

Query: 197 NSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKL 256
           N      ++  +          F                                 L +L
Sbjct: 187 N------RVAHV------HPHAF-------------------------------RDLGRL 203

Query: 257 ATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN 292
            TL +  N     +P E    L  L +L L+ N + 
Sbjct: 204 MTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.6 bits (184), Expect = 5e-15
 Identities = 56/248 (22%), Positives = 84/248 (33%), Gaps = 51/248 (20%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
            + Q + +  N+++            L  L++ +N L+       T L  L+ LD+S N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEP--LSNLSKLKAFNGEIYLETESHYNS 198
              S+  +    L  +  L L     Q    L P     L+ L+     +YL      N 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQ----YLYL----QDN- 139

Query: 199 LTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHC-----L 253
                 L ++       D TF        DL N  L+HL L G   N +  +       L
Sbjct: 140 -----ALQALP------DDTF-------RDLGN--LTHLFLHG---NRISSVPERAFRGL 176

Query: 254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQI 313
             L  L +  N    H+       L  LM L L  N  + L    L          L  +
Sbjct: 177 HSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAP--------LRAL 227

Query: 314 SYLLLANN 321
            YL L +N
Sbjct: 228 QYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 46/225 (20%), Positives = 76/225 (33%), Gaps = 47/225 (20%)

Query: 129 TSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI 188
            + Q + +  N+++  + ++      ++  L L +N     I     + L+ L+    ++
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLE----QL 85

Query: 189 YLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLM 248
            L      N+     QL S+         TF       H L    L  L+L       L 
Sbjct: 86  DLS----DNA-----QLRSVD------PATF-------HGLGR--LHTLHLDR---CGLQ 118

Query: 249 PIH-----CLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSI 303
            +       L  L  L + +N  Q  +P +    L  L HL         L  NR+    
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHL--------FLHGNRISSVP 169

Query: 304 PNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS 348
                 L  +  LLL  N +    P     L  +  + L  NNLS
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 46/254 (18%), Positives = 78/254 (30%), Gaps = 71/254 (27%)

Query: 232 ADLSHLNLSGEFPNWLMPI-----HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNL 286
           A    + L G   N +  +        + L  L + +N     I     T L  L  L+L
Sbjct: 32  AASQRIFLHG---NRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87

Query: 287 SRN---------AFN--------DLSYNRLQGSIP-NWIDRLPQISYLLLANNYIEGEIP 328
           S N          F+         L    LQ  +       L  + YL L +N ++  +P
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALP 145

Query: 329 AQLCQ-LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG 387
               + L  +  + L  N +          +++ E                    F    
Sbjct: 146 DDTFRDLGNLTHLFLHGNRI----------SSVPERA------------------FRG-- 175

Query: 388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNL 447
                      L S+  + L  N++    P     L R+  L L  NNL+       + L
Sbjct: 176 -----------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224

Query: 448 KQIESLDLSYNLLH 461
           + ++ L L+ N   
Sbjct: 225 RALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
           I  +   I L  N+++            +  L L  N L       F+ L  +E LDLS 
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 458 NLLHGKIPQ--LIVLTTLAVFRVAYNNLSGKIPDRV 491
           N     +       L  L    +    L  ++   +
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 399 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPI-TFSNLKQIESLDLS 456
           L  +  +DLS N     +       L R+  L+L    L   +    F  L  ++ L L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 457 YNLLHGKIPQ--LIVLTTLAVFRVAYNNLSGKIPDRV 491
            N L   +P      L  L    +  N +S  +P+R 
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERA 172

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 54/262 (20%), Positives = 89/262 (33%), Gaps = 59/262 (22%)

Query: 32  ASLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQELNVA 89
            S + L LS+   N    L    F     LQ L +   +++    GA    + L  L + 
Sbjct: 28  FSTKNLDLSF---NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 90  SNKLTRNFPLGL-CELVLLRELYIDNNDLSGSLP-LCLTNLTSLQVLDVSYNQLTESISS 147
            N +  +  LG    L  L++L     +L+ SL    + +L +L+ L+V++N +      
Sbjct: 85  GNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 148 SPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTS 207
                LT++E L LS+N  Q  I    L  L ++   N  + L      N       +  
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDL----SLN------PMNF 191

Query: 208 ISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQ 267
           I        G F +                                 +L  L +  N  +
Sbjct: 192 I------QPGAFKEI--------------------------------RLKELALDTNQLK 213

Query: 268 GHIPVEIGTYLPGLMHLNLSRN 289
             +P  I   L  L  + L  N
Sbjct: 214 -SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 61/274 (22%), Positives = 96/274 (35%), Gaps = 77/274 (28%)

Query: 58  VHLQELYIRDNDLR-------DSLLGAWQTTSLQELNVASNKLTRNFPLGLCE-LVLLRE 109
              + L +  N LR        S         LQ L+++  ++      G  + L  L  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSF------PELQVLDLSRCEIQ-TIEDGAYQSLSHLST 80

Query: 110 LYIDNNDLSGSLPL-CLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI 168
           L +  N +  SL L   + L+SLQ L      L  S+ + P+  L +++EL +++N  Q 
Sbjct: 81  LILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS 138

Query: 169 PISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHD 228
               E  SNL+ L+     + L      N      ++ SI                    
Sbjct: 139 FKLPEYFSNLTNLE----HLDL----SSN------KIQSIY------CTDLRV------- 171

Query: 229 LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSR 288
           L    +  LNLS                  LD+S N     I       +  L  L L  
Sbjct: 172 LHQ--MPLLNLS------------------LDLSLNPMN-FIQPGAFKEIR-LKELALD- 208

Query: 289 NAFNDLSYNRLQGSIPNWI-DRLPQISYLLLANN 321
                   N+L+ S+P+ I DRL  +  + L  N
Sbjct: 209 -------TNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 42/230 (18%), Positives = 67/230 (29%), Gaps = 66/230 (28%)

Query: 251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN--------AFN--------DL 294
               +L  LD+S    Q  I       L  L  L L+ N        AF+          
Sbjct: 49  FSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 295 SYNRLQGSIPNWI-DRLPQISYLLLANNYIEGEIP-----AQLCQLKEVRLIDLSHNNLS 348
               L  S+ N+    L  +  L +A+N I+         + L  L+    +DLS N + 
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEH---LDLSSNKI- 161

Query: 349 GHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLS 408
                     ++       +                            Q+      +DLS
Sbjct: 162 ---------QSIYCTDLRVL---------------------------HQMPLLNLSLDLS 185

Query: 409 CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
            N +   I        R++ L L  N L       F  L  ++ + L  N
Sbjct: 186 LNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 42/227 (18%), Positives = 71/227 (31%), Gaps = 71/227 (31%)

Query: 129 TSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEP--LSNLSKLKAFNG 186
            S + LD+S+N L   + S        ++ L LS    Q   ++E     +LS L     
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLS---- 79

Query: 187 EIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNW 246
            + L      N       + S++       G F                           
Sbjct: 80  TLIL----TGN------PIQSLA------LGAF--------------------------- 96

Query: 247 LMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW 306
                 L  L  L          +      +L  L  LN++ N             +P +
Sbjct: 97  ----SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK-------LPEY 144

Query: 307 IDRLPQISYLLLANNYIEGEIPAQ----LCQLKEVRL-IDLSHNNLS 348
              L  + +L L++N I+  I       L Q+  + L +DLS N ++
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 52/175 (29%)

Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANN---YIEGEIPAQLCQLKEVRLIDLSHNNLSG 349
           DLS+N L+          P++  L L+      IE      L  L     + L+ N +  
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST---LILTGNPI-- 88

Query: 350 HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSC 409
                    +L                          G+  G       L+S+  +    
Sbjct: 89  --------QSL------------------------ALGAFSG-------LSSLQKLVAVE 109

Query: 410 NKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPI--TFSNLKQIESLDLSYNLLH 461
             L   +     G+L  ++ LN++HN +  +  +   FSNL  +E LDLS N + 
Sbjct: 110 TNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 399 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
           L+ +S + L+ N +   +       L+ ++ L     NL         +LK ++ L++++
Sbjct: 75  LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 458 NLLHGKIPQLIV---LTTLAVFRVAYNNLSGKIPDRV 491
           NL+            LT L    ++ N +   I    
Sbjct: 134 NLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.1 bits (185), Expect = 5e-15
 Identities = 55/269 (20%), Positives = 101/269 (37%), Gaps = 56/269 (20%)

Query: 29  ELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNV 88
           +  A     +L    +      ++    L  + ++   ++D++  + G     ++ +L +
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNE----LNSIDQIIANNSDIKS-VQGIQYLPNVTKLFL 75

Query: 89  ASNKLTRNFPLGLCELVLLRELYIDNN---DLSGSLPLCLTNLTSLQVLDVSYNQLTESI 145
             NKLT   PL    L  L  L++D N   DLS      L +L  L+ L + +N +++  
Sbjct: 76  NGNKLTDIKPL--ANLKNLGWLFLDENKVKDLSS-----LKDLKKLKSLSLEHNGISDI- 127

Query: 146 SSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQL 205
             + L+ L  +E L L NN       +  LS L+KL      + L      N      Q+
Sbjct: 128 --NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLD----TLSL----EDN------QI 168

Query: 206 TSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNF 265
           + I              L     L+N  LS  ++S      L  +  L+ L  L++ +  
Sbjct: 169 SDIV------------PLAGLTKLQNLYLSKNHISD-----LRALAGLKNLDVLELFSQ- 210

Query: 266 FQGHIPVEIGTYLPGLMHLNLSRNAFNDL 294
                  +   +   L+  N  +N    L
Sbjct: 211 ---ECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 54/358 (15%), Positives = 112/358 (31%), Gaps = 99/358 (27%)

Query: 106 LLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNH 165
           L  E       +                 ++    +T    +     L SI+++I +N+ 
Sbjct: 3   LGSETITVPTPIKQIFSDD--AFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSD 57

Query: 166 FQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYH 225
            +   S++ +  L  +     +++L    + N      +LT I              L +
Sbjct: 58  IK---SVQGIQYLPNVT----KLFL----NGN------KLTDIK------------PLAN 88

Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
             +L    L    +       L  +  L+KL +L + +N       +    +LP L  L 
Sbjct: 89  LKNLGWLFLDENKVKD-----LSSLKDLKKLKSLSLEHNGISDINGLV---HLPQLESLY 140

Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
           L  N   D++           + RL ++  L L +N I  +I   L  L +++ + LS N
Sbjct: 141 LGNNKITDITV----------LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKN 188

Query: 346 NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
           ++S                              AL+                 L ++  +
Sbjct: 189 HIS---------------------------DLRALAG----------------LKNLDVL 205

Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGK 463
           +L   +   +       L     +  +  +L    P   S+    E  ++ ++L    
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 45/259 (17%), Positives = 93/259 (35%), Gaps = 63/259 (24%)

Query: 232 ADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF 291
           A+    NL  +     +  + L  +  +  +N+  +    ++   YLP +  L L+ N  
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLFLNGNKL 80

Query: 292 NDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHI 351
            D+            +  L  + +L L  N ++ ++ + L  LK+++ + L HN +S   
Sbjct: 81  TDIKP----------LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS--- 125

Query: 352 PFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNK 411
                                                       +  L  +  + L  NK
Sbjct: 126 ----------------------------------------DINGLVHLPQLESLYLGNNK 145

Query: 412 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLT 471
           +T +I   +  LT++  L+L  N ++  +P   + L ++++L LS N +   +  L  L 
Sbjct: 146 IT-DITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRALAGLK 200

Query: 472 TLAVFRVAYNNLSGKIPDR 490
            L V  +       K  + 
Sbjct: 201 NLDVLELFSQECLNKPINH 219

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 34/236 (14%), Positives = 75/236 (31%), Gaps = 63/236 (26%)

Query: 249 PIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID 308
                 +    ++        +       L  +  +  + +    +            I 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQG----------IQ 65

Query: 309 RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAV 368
            LP ++ L L  N +  +I   L  LK +  + L  N +                     
Sbjct: 66  YLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-------------------- 103

Query: 369 APTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA 428
                                     +++ L  +  + L  N ++ +I   + +L ++ +
Sbjct: 104 -----------------------DLSSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLES 138

Query: 429 LNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
           L L +N +T    +  S L ++++L L  N +   I  L  LT L    ++ N++S
Sbjct: 139 LYLGNNKITDITVL--SRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHIS 191

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.9 bits (186), Expect = 1e-14
 Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 19/195 (9%)

Query: 6   NLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQEL-- 63
           ++E   + Q  +E      ++  E    L  + L    L+      +       L+ +  
Sbjct: 357 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 416

Query: 64  -------YIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNND 116
                   +R   L ++ +   +   ++ L++A   LT      L +L+L+  L + +N 
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNR 474

Query: 117 LSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLS 176
           L  +LP  L  L  L+VL  S N L    +   +  L  ++EL+L NN  Q   +++PL 
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 177 NLSKLKAFNGEIYLE 191
           +  +L      + L+
Sbjct: 531 SCPRLV----LLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 5e-12
 Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 10/169 (5%)

Query: 6   NLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYI 65
            +  L       E    F  +  + +  +R   L   R            +   ++ L++
Sbjct: 391 LMRALDPLLYEKETLQYFSTL--KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 66  RDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCL 125
              DL   L    Q   +  L+++ N+L    P  L  L  L  L   +N L  ++   +
Sbjct: 449 AHKDLT-VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD-GV 504

Query: 126 TNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEP 174
            NL  LQ L +  N+L +S +  PL+    +  L L  N     +  E 
Sbjct: 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN----SLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 5e-09
 Identities = 44/239 (18%), Positives = 80/239 (33%), Gaps = 37/239 (15%)

Query: 111 YIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPI 170
               ++      L +   T LQ    S  +L E    +   LLT I  +   +       
Sbjct: 344 DSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 403

Query: 171 SLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLK 230
           +L+  S L  +         +  S +                               D++
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLL-------------------ENSVLKMEYADVR 444

Query: 231 NADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290
              L+H +L+      L  +  L  +  LD+S+N  +  +P  +   L  L  L      
Sbjct: 445 VLHLAHKDLTV-----LCHLEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQ----- 492

Query: 291 FNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEG-EIPAQLCQLKEVRLIDLSHNNLS 348
               S N L+ ++   +  LP++  LLL NN ++       L     + L++L  N+L 
Sbjct: 493 ---ASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 31/245 (12%), Positives = 74/245 (30%), Gaps = 8/245 (3%)

Query: 244 PNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSI 303
              L           +   ++  +  + ++              +    +LS  +    +
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VL 364

Query: 304 PNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG--HIPFCLVNTALS 361
            + ++   ++  L   N +    I   +  L  +     +    S    +          
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424

Query: 362 EGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIG 421
                 +  +        +         +     ++ L  ++ +DLS N+L   +P  + 
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALA 483

Query: 422 YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL--HGKIPQLIVLTTLAVFRVA 479
            L  +  L  S N L   +    +NL +++ L L  N L     I  L+    L +  + 
Sbjct: 484 ALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

Query: 480 YNNLS 484
            N+L 
Sbjct: 542 GNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 41/277 (14%), Positives = 82/277 (29%), Gaps = 19/277 (6%)

Query: 219 FPKFLYHQHDLKNADLSHLNLSGE---FPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIG 275
           + ++L  + +  +          E      +  P+    ++ TL +  +     +     
Sbjct: 231 YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTP 290

Query: 276 TYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLK 335
                  H+ L       L+    Q +              +L  +  E          +
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA-TDE 349

Query: 336 EVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEET 395
           ++   +LS    +           L E   +                         ++ET
Sbjct: 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-----EKET 404

Query: 396 VQILTSMSGID--------LSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNL 447
           +Q  +++  +D           +K   E          +R L+L+H +LT  +      L
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQL 462

Query: 448 KQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
             +  LDLS+N L    P L  L  L V + + N L 
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 13/158 (8%)

Query: 32  ASLRLLSLSYSRLNKNTILDQG--FCQLVHLQELYIRDNDLRDSLLGAW-QTTSLQELNV 88
           +   LL LS+   N  + L       +L +L  L +  N L      A+    +L+ L++
Sbjct: 39  SYTALLDLSH---NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 89  ASNKLTRNFPLG-LCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISS 147
           +SN L          +L  L  L + NN +         ++  LQ L +S NQ++     
Sbjct: 96  SSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153

Query: 148 ---SPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLK 182
                   L  +  L LS+N  +  + L  L  L    
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWV 190

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 29/187 (15%)

Query: 81  TSLQELNVASNKLTRNFPLG-LCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN 139
           +    L+++ N L+R         L  L  L + +N L+         + +L+ LD+S N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 140 QLTESISSSPLMLLTSIEELILSNNHFQIPISLEP--LSNLSKLKAFNGEIYLETESHYN 197
            L  ++       L ++E L+L NNH      ++     ++++L+    ++YL      N
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQ----KLYL----SQN 146

Query: 198 SLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLA 257
                 Q++              K       L   DLS   L       L  +    K  
Sbjct: 147 ------QISRFP------VELI-KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN- 192

Query: 258 TLDVSNN 264
            L + NN
Sbjct: 193 GLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 53/199 (26%)

Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQ--LCQLKEVRLIDLSHNNLSGH 350
             S  +L  ++P  +      + L L++N +   + A+    +L  +  + LSHN+L   
Sbjct: 24  SCSKQQLP-NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL--- 76

Query: 351 IPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCN 410
                    +S          +                          + ++  +DLS N
Sbjct: 77  -------NFISSE-------AFVP------------------------VPNLRYLDLSSN 98

Query: 411 KLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL----HGKIP 465
            L   +   +   L  +  L L +N++       F ++ Q++ L LS N +       I 
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 466 QLIVLTTLAVFRVAYNNLS 484
               L  L +  ++ N L 
Sbjct: 158 DGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 50/202 (24%)

Query: 129 TSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEP--LSNLSKLKAFNG 186
           +   +LD+S+N L+   +      LT++  L+LS+NH      +       +  L+    
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLR---- 91

Query: 187 EIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNW 246
            + L      N       L ++      D+  F        DL+   L  L L     N 
Sbjct: 92  YLDL----SSN------HLHTL------DEFLF-------SDLQA--LEVLLLYN---NH 123

Query: 247 LMPIHC-----LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQG 301
           ++ +       + +L  L +S N      PVE+      L  L L      DLS N+L+ 
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLML-----LDLSSNKLKK 177

Query: 302 SIPNWIDRLPQIS--YLLLANN 321
                + +LP      L L NN
Sbjct: 178 LPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 398 ILTSMSGIDLSCNKLTGEIPTQI--GYLTRIRALNLSHNNLTGTIPI-TFSNLKQIESLD 454
           + +  + +DLS N L+  +  +     LT + +L LSHN+L   I    F  +  +  LD
Sbjct: 37  LPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94

Query: 455 LSYNLLHGKIPQLIV--LTTLAVFRVAYNNLSGKIPDRV 491
           LS N LH  + + +   L  L V  +  N++   +    
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNA 131

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 20/123 (16%)

Query: 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLS 287
           DL + +LS L               L  L +L +S+N     I  E    +P L +L   
Sbjct: 45  DLSHNNLSRLRAEWTPTR-------LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYL--- 93

Query: 288 RNAFNDLSYNRLQGSIPNWI-DRLPQISYLLLANNYIEGEIPA-QLCQLKEVRLIDLSHN 345
                DLS N L  ++  ++   L  +  LLL NN+I   +       + +++ + LS N
Sbjct: 94  -----DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 346 NLS 348
            +S
Sbjct: 147 QIS 149

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.8 bits (174), Expect = 8e-14
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 13/170 (7%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVAS 90
           ++ ++  +   S +        G     +L+EL++  N + D L      T L+EL+V  
Sbjct: 40  LSGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSHNQISD-LSPLKDLTKLEELSVNR 94

Query: 91  NKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPL 150
           N+L     +    L     L++DNN+L  +  L   +L +L++L +  N+L    S   L
Sbjct: 95  NRLKNLNGIPSACL---SRLFLDNNELRDTDSLI--HLKNLEILSIRNNKLK---SIVML 146

Query: 151 MLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLT 200
             L+ +E L L  N       L  L  ++ +     +   E   +   L 
Sbjct: 147 GFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELY 196

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 44/247 (17%), Positives = 87/247 (35%), Gaps = 48/247 (19%)

Query: 44  LNKNTILD-QGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLC 102
                I        L +  +  +    + D L+   + + +Q  N  ++ +      G+ 
Sbjct: 4   QRPTPINQVFPDPGLANAVKQNLGKQSVTD-LVSQKELSGVQNFNGDNSNIQS--LAGMQ 60

Query: 103 ELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILS 162
               L+EL++ +N +S   PL   +LT L+ L V+ N+L    + + +     +  L L 
Sbjct: 61  FFTNLKELHLSHNQISDLSPLK--DLTKLEELSVNRNRLK---NLNGIPSAC-LSRLFLD 114

Query: 163 NNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKF 222
           NN  +     + L +L  L+     + +      N      +L SI              
Sbjct: 115 NNELR---DTDSLIHLKNLE----ILSI----RNN------KLKSIV------------M 145

Query: 223 LYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLM 282
           L     L+  DL    ++         +  L+K+  +D++          E   Y P L 
Sbjct: 146 LGFLSKLEVLDLHGNEITN-----TGGLTRLKKVNWIDLTGQ----KCVNEPVKYQPELY 196

Query: 283 HLNLSRN 289
             N  ++
Sbjct: 197 ITNTVKD 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 39/224 (17%), Positives = 74/224 (33%), Gaps = 53/224 (23%)

Query: 125 LTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAF 184
              L +    ++    +T+         L+ ++     N++ Q   SL  +   + LK  
Sbjct: 15  DPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLK-- 66

Query: 185 NGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFP 244
             E++L     +N      Q++ +S             L     L+   ++   L     
Sbjct: 67  --ELHL----SHN------QISDLS------------PLKDLTKLEELSVNRNRLKN--- 99

Query: 245 NWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIP 304
             L  I     L+ L + NN  +    +    +L  L  L++  N    +          
Sbjct: 100 --LNGIPSA-CLSRLFLDNNELRDTDSLI---HLKNLEILSIRNNKLKSIVM-------- 145

Query: 305 NWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS 348
             +  L ++  L L  N I       L +LK+V  IDL+     
Sbjct: 146 --LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 32/210 (15%), Positives = 76/210 (36%), Gaps = 41/210 (19%)

Query: 249 PIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID 308
           P   L      ++        +  +    L G+ + N   +    L+           + 
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQSLAG----------MQ 60

Query: 309 RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAV 368
               +  L L++N I  ++   L  L ++  + ++ N L                     
Sbjct: 61  FFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-------------------- 98

Query: 369 APTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA 428
               +   +  LS    + + +   +++  L ++  + +  NKL   I   +G+L+++  
Sbjct: 99  --NLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEV 154

Query: 429 LNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
           L+L  N +T T  +  + LK++  +DL+  
Sbjct: 155 LDLHGNEITNTGGL--TRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 42/201 (20%), Positives = 70/201 (34%), Gaps = 50/201 (24%)

Query: 148 SPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTS 207
            P   L +  +  L          L     LS ++ FNG          +       + S
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNG--------DNS------NIQS 55

Query: 208 ISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQ 267
           ++             +    +LK   LSH  +S      L P+  L KL  L V+ N   
Sbjct: 56  LA------------GMQFFTNLKELHLSHNQISD-----LSPLKDLTKLEELSVNRN--- 95

Query: 268 GHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEI 327
             +       L G+    LSR     L  N L+    + +  L  +  L + NN ++  I
Sbjct: 96  -RL-----KNLNGIPSACLSR---LFLDNNELR-DTDS-LIHLKNLEILSIRNNKLK-SI 143

Query: 328 PAQLCQLKEVRLIDLSHNNLS 348
              L  L ++ ++DL  N ++
Sbjct: 144 VM-LGFLSKLEVLDLHGNEIT 163

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.6 bits (168), Expect = 7e-13
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 9/156 (5%)

Query: 35  RLLSLSYSRLNKNTILD-QGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNK 92
               L+   L++  +   Q    L  L  L +  N L+ SL    Q   +L  L+V+ N+
Sbjct: 53  PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111

Query: 93  LTRNFPLGL-CELVLLRELYIDNNDLSGSLPL-CLTNLTSLQVLDVSYNQLTESISSSPL 150
           LT + PLG    L  L+ELY+  N+L  +LP   LT    L+ L ++ N LT  + +  L
Sbjct: 112 LT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL 168

Query: 151 MLLTSIEELILSNNHFQ-IPISLEPLSNLSKLKAFN 185
             L +++ L+L  N    IP        L       
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 54/248 (21%), Positives = 78/248 (31%), Gaps = 57/248 (22%)

Query: 80  TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN 139
             S  E+N     LT   P  L        L++  N L       L   T L  L++   
Sbjct: 9   VASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 140 QLTESISSSPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLKAFNGEIYLETESHYNS 198
           +LT          L  +  L LS+N  Q +P+  + L  L+ L        +     +N 
Sbjct: 66  ELT---KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-------DV----SFN- 110

Query: 199 LTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPI-----HCL 253
                +LTS+        G           L    L  L L G   N L  +        
Sbjct: 111 -----RLTSLP------LGAL-------RGLGE--LQELYLKG---NELKTLPPGLLTPT 147

Query: 254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQI 313
            KL  L ++NN     +P  +   L  L  L L          N L  +IP        +
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE--------NSLY-TIPKGFFGSHLL 197

Query: 314 SYLLLANN 321
            +  L  N
Sbjct: 198 PFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 45/213 (21%), Positives = 70/213 (32%), Gaps = 64/213 (30%)

Query: 251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL 310
               +L  L++        + V+    LP L  L        DLS+N+LQ S+P     L
Sbjct: 52  MPYTRLTQLNLDRAELT-KLQVDGT--LPVLGTL--------DLSHNQLQ-SLPLLGQTL 99

Query: 311 PQISYLLLANNYIEGEIPA----QLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYD 366
           P ++ L ++ N +   +P      L +L+E   + L  N L            L  G   
Sbjct: 100 PALTVLDVSFNRLT-SLPLGALRGLGELQE---LYLKGNEL----------KTLPPGLLT 145

Query: 367 AVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTR 425
                                              +  + L+ N LT E+P  +   L  
Sbjct: 146 P-------------------------------TPKLEKLSLANNNLT-ELPAGLLNGLEN 173

Query: 426 IRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
           +  L L  N+L  TIP  F     +    L  N
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 53/248 (21%), Positives = 80/248 (32%), Gaps = 80/248 (32%)

Query: 107 LRELYIDNNDLSGSLPLCLTNL-TSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNH 165
             E+  D  +L+ +LP    +L     +L +S N L  + S + LM  T + +L L    
Sbjct: 12  HLEVNCDKRNLT-ALP---PDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAE 66

Query: 166 FQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYH 225
                 L+    L  L      + L     +N      QL S+                 
Sbjct: 67  LT---KLQVDGTLPVLG----TLDL----SHN------QLQSLP-------LLGQT---- 98

Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
                                      L  L  LDVS N     +P+     L  L  L 
Sbjct: 99  ---------------------------LPALTVLDVSFNRLT-SLPLGALRGLGELQEL- 129

Query: 286 LSRNAFNDLSYNRLQGSIPNWI-DRLPQISYLLLANNYIEGEIPA----QLCQLKEVRLI 340
                   L  N L+ ++P  +    P++  L LANN +  E+PA     L  L     +
Sbjct: 130 -------YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT---L 177

Query: 341 DLSHNNLS 348
            L  N+L 
Sbjct: 178 LLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 20/116 (17%)

Query: 33  SLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLR-------DSLLGAWQTTSLQ 84
           +L +L +S+   N+ T L  G    L  LQELY++ N+L+                  L+
Sbjct: 101 ALTVLDVSF---NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT------PKLE 151

Query: 85  ELNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN 139
           +L++A+N LT   P GL   L  L  L +  N L  ++P        L    +  N
Sbjct: 152 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 37/227 (16%), Positives = 74/227 (32%), Gaps = 62/227 (27%)

Query: 249 PIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGL-MHLN----LSRNAFN--------DLS 295
            +  +     ++         +P ++      L +  N     S             +L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 296 YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCL 355
              L   +      LP +  L L++N ++  +P     L  + ++D+S N L        
Sbjct: 64  RAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-------- 112

Query: 356 VNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE 415
             T+L  G                                   L  +  + L  N+L   
Sbjct: 113 --TSLPLGALRG-------------------------------LGELQELYLKGNELK-T 138

Query: 416 IPTQI-GYLTRIRALNLSHNNLTGTIPI-TFSNLKQIESLDLSYNLL 460
           +P  +     ++  L+L++NNLT  +P    + L+ +++L L  N L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
            T ++ ++L   +LT ++      L  +  L+LSHN L  ++P+    L  +  LD+S+N
Sbjct: 54  YTRLTQLNLDRAELT-KLQVDGT-LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110

Query: 459 LLHGKIP-----QLIVLTTLAVFRVAYNNLSGKIPDRV 491
            L   +P      L  L  L    +  N L   +P  +
Sbjct: 111 RLT-SLPLGALRGLGELQEL---YLKGNELK-TLPPGL 143

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 15/187 (8%)

Query: 32  ASLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLRDSLLGAW-QTTSLQELNVA 89
           A  + L L     NK + L    F +L  L+ LY+ DN L+    G + +  +L+ L V 
Sbjct: 37  ADTKKLDLQS---NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93

Query: 90  SNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPL-CLTNLTSLQVLDVSYNQLTESISS 147
            NKL    P+G+ + LV L EL +D N L  SLP     +LT L  L + YN+L  S+  
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150

Query: 148 SPLMLLTSIEELILSNNHFQ-IPISL-EPLSNLSKLKAFNGEIYLETESHYNSLTPKFQL 205
                LTS++EL L NN  + +P    + L+ L  LK  N ++    E  ++SL    +L
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE---KL 207

Query: 206 TSISLSG 212
             + L  
Sbjct: 208 KMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.9 bits (151), Expect = 9e-11
 Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 22/144 (15%)

Query: 31  MASLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLR-------DSLLGAWQTTS 82
           + +L  L ++ ++L     L  G F QLV+L EL +  N L+       DSL      T 
Sbjct: 84  LKNLETLWVTDNKL---QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL------TK 134

Query: 83  LQELNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPLCL-TNLTSLQVLDVSYNQ 140
           L  L++  N+L  + P G+ + L  L+EL + NN L   +P      LT L+ L +  NQ
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQ 192

Query: 141 LTESISSSPLMLLTSIEELILSNN 164
           L   +       L  ++ L L  N
Sbjct: 193 LK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 50/223 (22%), Positives = 83/223 (37%), Gaps = 54/223 (24%)

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166
            ++L + +N LS         LT L++L ++ N+L  ++ +     L ++E L +++N  
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 167 Q-IPISL-EPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLY 224
           Q +PI + + L NL++L        L      N      QL S+          F     
Sbjct: 98  QALPIGVFDQLVNLAEL-------RL----DRN------QLKSLP------PRVF----- 129

Query: 225 HQHDLKNADLSHLNLSGEFPNWLMPI-----HCLQKLATLDVSNNFFQGHIPVEIGTYLP 279
               L    L++L+L     N L  +       L  L  L + NN  +  +P      L 
Sbjct: 130 --DSLTK--LTYLSLGY---NELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLT 181

Query: 280 GLMHLNLSRNAFNDLSYNRLQGSIPNWI-DRLPQISYLLLANN 321
            L  L L  N             +P    D L ++  L L  N
Sbjct: 182 ELKTLKLDNNQLK---------RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 60/213 (28%)

Query: 251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI-DR 309
           H L KL  L +++N  Q  +P  I   L  L  L         ++ N+LQ ++P  + D+
Sbjct: 58  HRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL--------WVTDNKLQ-ALPIGVFDQ 107

Query: 310 LPQISYLLLANN---YIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYD 366
           L  ++ L L  N    +   +   L +L     + L +N L           +L +G +D
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTY---LSLGYNEL----------QSLPKGVFD 154

Query: 367 AVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTR 425
                                           LTS+  + L  N+L   +P      LT 
Sbjct: 155 K-------------------------------LTSLKELRLYNNQLK-RVPEGAFDKLTE 182

Query: 426 IRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
           ++ L L +N L       F +L++++ L L  N
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 48/235 (20%), Positives = 88/235 (37%), Gaps = 62/235 (26%)

Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPA----QLCQLKEVRLIDLSHNNLS 348
           DL  N+L         RL ++  L L +N ++  +PA    +L  L+ +    ++ N L 
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL---WVTDNKL- 97

Query: 349 GHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLS 408
                     AL  G +D                                L +++ + L 
Sbjct: 98  ---------QALPIGVFDQ-------------------------------LVNLAELRLD 117

Query: 409 CNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPI-TFSNLKQIESLDLSYNLLHGKIPQ 466
            N+L   +P ++   LT++  L+L +N L  ++P   F  L  ++ L L  N L  ++P+
Sbjct: 118 RNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPE 174

Query: 467 LI--VLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDD 519
                LT L   ++  N L  ++P+       F+         L   P   +C+ 
Sbjct: 175 GAFDKLTELKTLKLDNNQLK-RVPE-----GAFDSLEKLKMLQLQENPWDCTCNG 223

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 48/275 (17%), Positives = 90/275 (32%), Gaps = 41/275 (14%)

Query: 20  NTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSL-LGAW 78
            +   +I S+L  +   L    ++L    I    F     L+++ I  ND+ + +    +
Sbjct: 18  ESKVTEIPSDLPRNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75

Query: 79  QT-TSLQELNVA-SNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPLCLTNLTSLQVLD 135
                L E+ +  +N L         + L  L+ L I N  +     +   +     +LD
Sbjct: 76  SNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134

Query: 136 VSYNQLTESISSSPLMLLTS-IEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETES 194
           +  N    +I  +  + L+     L L+ N  Q    +          AFNG    E   
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQ---EIHN-------SAFNGTQLDELNL 184

Query: 195 HYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQ 254
             N+      L  +       +  F    +        D+S   +    P++ +    L+
Sbjct: 185 SDNN-----NLEELP------NDVF----HGASGPVILDISRTRIH-SLPSYGL--ENLK 226

Query: 255 KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN 289
           KL      N        +     L  LM  +L+  
Sbjct: 227 KLRARSTYNL-----KKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 9e-08
 Identities = 44/265 (16%), Positives = 83/265 (31%), Gaps = 41/265 (15%)

Query: 82  SLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQL 141
           S +      +K+T   P  L       EL      L        +    L+ +++S N +
Sbjct: 10  SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 142 TESISSSPLMLLTSIEELILSN-NHFQI--PISLEPLSNLSKLKAFNGEI-YLETESHYN 197
            E I +     L  + E+ +   N+     P + + L NL  L   N  I +L      +
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126

Query: 198 SLTPKF-------QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPI 250
           SL            + +I         +F        +     L+   +  E  N     
Sbjct: 127 SLQKVLLDIQDNINIHTIE------RNSFVG---LSFESVILWLNKNGIQ-EIHNSA--F 174

Query: 251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQG--------- 301
           +  Q        NN  +  +P ++     G + L++SR   + L    L+          
Sbjct: 175 NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 302 ----SIPNWIDRLPQISYLLLANNY 322
                +P  +++L  +    L    
Sbjct: 234 YNLKKLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 41/242 (16%), Positives = 72/242 (29%), Gaps = 46/242 (19%)

Query: 129 TSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI 188
            +   L     +L   I          +E++ +S N     I  +  SNL KL     EI
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH----EI 84

Query: 189 YLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLM 248
            +      N       L  I+          P+   +  +L+   +S+  +    P+   
Sbjct: 85  RI---EKAN------NLLYIN----------PEAFQNLPNLQYLLISNTGIK-HLPDVHK 124

Query: 249 PIHCLQKLATLDVSNNFFQGHIPVEIGTYLPG-LMHLNLSRN--------AFNDLS---- 295
                 +   LD+ +N     I       L    + L L++N        AFN       
Sbjct: 125 IH--SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL 182

Query: 296 ----YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHI 351
                N L+    +          L ++   I   +P+   +    +L   S  NL    
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLE-NLKKLRARSTYNLKKLP 240

Query: 352 PF 353
             
Sbjct: 241 TL 242

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 38/235 (16%), Positives = 71/235 (30%), Gaps = 37/235 (15%)

Query: 253 LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI-DRLP 311
              L  +++S N     I  ++ + LP L  + + +        N L   I       LP
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA-------NNLL-YINPEAFQNLP 104

Query: 312 QISYLLLANNYIEGEIPAQL-CQLKEVRLIDLSHNNLSGHIP---FCLVNTALSEGYYDA 367
            + YLL++N  I+  +P        +  L+D+  N     I    F  ++          
Sbjct: 105 NLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES------- 156

Query: 368 VAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRI 426
                   +   +     +                       N L  E+P  +    +  
Sbjct: 157 ---VILWLNKNGIQEIHNS--------AFNGTQLDELNLSDNNNLE-ELPNDVFHGASGP 204

Query: 427 RALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYN 481
             L++S   +         NLK++ +          K+P L  L  L    + Y 
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 11/92 (11%)

Query: 405 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI 464
                +K+T EIP+ +        L      L       FS    +E +++S N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 465 P-----QLIVLTTLAVFRVAYNNLSGKIPDRV 491
                  L  L  + + +   NNL   I    
Sbjct: 71  EADVFSNLPKLHEIRIEK--ANNLL-YINPEA 99

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 75/476 (15%), Positives = 142/476 (29%), Gaps = 124/476 (26%)

Query: 24  LQIVSELMASLRLLSLSYSRLNKN--TILDQGFCQLVHLQELYIRDNDLRDS---LLGA- 77
              +  L+   +++ L    L +     +         L EL +R N+L D     +   
Sbjct: 20  WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79

Query: 78  --WQTTSLQELNVASNKLT----RNFPLGLCELVLLRELYIDNNDL--SGSLPLC---LT 126
               +  +Q+L++ +  LT          L  L  L+EL++ +N L  +G   LC   L 
Sbjct: 80  LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139

Query: 127 NLTSLQVLDVSYNQLTE----SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLK 182
               L+ L + Y  L+      ++S  L      +EL +SNN     I+   +  L +  
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSNND----INEAGVRVLCQGL 194

Query: 183 AFNGEIYLETESHYNSLTPKFQLTSISLS----GYRDDGTFPKFLYHQHDLKNADLSHLN 238
                                QL ++ L        +       +  +  L+   L    
Sbjct: 195 K----------------DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 239 LSGEFPNWL--MPIHCLQKLATLDVSNNFFQGHIPVEIGTYL---PGLMHLNLSRNAFND 293
           L       L    +H   +L TL +           ++   L     L  L+L+ N   D
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298

Query: 294 LSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPF 353
                         +    +   LL             CQL+    + +   + +     
Sbjct: 299 --------------EGARLLCETLLEPG----------CQLES---LWVKSCSFT----- 326

Query: 354 CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLT 413
                                A     S              +     +  + +S N+L 
Sbjct: 327 --------------------AACCSHFS------------SVLAQNRFLLELQISNNRLE 354

Query: 414 GEIPTQIG-----YLTRIRALNLSHNNLT----GTIPITFSNLKQIESLDLSYNLL 460
                ++        + +R L L+  +++     ++  T      +  LDLS N L
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.7 bits (148), Expect = 6e-10
 Identities = 60/368 (16%), Positives = 118/368 (32%), Gaps = 72/368 (19%)

Query: 37  LSLSYSRLNKNTILDQGFCQLV----HLQELYIRDNDLRD-------SLLGAWQTTSLQE 85
           L +    +    + D  + +L+      Q + + D  L +       S L      +L E
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR--VNPALAE 60

Query: 86  LNVASNKLTRNFPLGLCELVL-----LRELYIDNNDLS----GSLPLCLTNLTSLQVLDV 136
           LN+ SN+L       + + +      +++L + N  L+    G L   L  L +LQ L +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 137 SYNQLTES----ISSSPLMLLTSIEELILSNNHF------QIPISLEPLSNLSKLKAFNG 186
           S N L ++    +    L     +E+L L            +   L    +  +L     
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL----- 175

Query: 187 EIYLETESHYNSL-------------TPKFQLTSISLS----GYRDDGTFPKFLYHQHDL 229
              +      N +                 QL ++ L        +       +  +  L
Sbjct: 176 --TV----SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 230 KNADLSHLNLSGEFPNWL--MPIHCLQKLATLDVSNNFFQGHIPVEIGTYL---PGLMHL 284
           +   L    L       L    +H   +L TL +           ++   L     L  L
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289

Query: 285 NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGE----IPAQLCQLKEVRLI 340
           +L+ N   D     L  ++   ++   Q+  L + +            + L Q + +  +
Sbjct: 290 SLAGNELGDEGARLLCETL---LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346

Query: 341 DLSHNNLS 348
            +S+N L 
Sbjct: 347 QISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 61/336 (18%), Positives = 105/336 (31%), Gaps = 63/336 (18%)

Query: 38  SLSYSRLNKNTILDQG-------FCQLVHLQELYIRDNDLRDS---LLGA---WQTTSLQ 84
            L   +L   ++                  +EL + +ND+ ++   +L          L+
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 85  ELNVASNKLT----RNFPLGLCELVLLRELYIDNNDL--SGSLPLC---LTNLTSLQVLD 135
            L + S  +T    R+    +     LREL + +N L   G   LC   L   + L+ L 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 136 VSYNQLTE----SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLE 191
           +    +T      +    L    S++EL L+ N     +  E    L +           
Sbjct: 263 IWECGITAKGCGDLCRV-LRAKESLKELSLAGNE----LGDEGARLLCETLLE------- 310

Query: 192 TESHYNSLTPKFQLTSISLSGYR--DDG--TFPKFLYHQHDLKNADLSHLNLSGE----F 243
                    P  QL S+ +            F   L     L    +S+  L        
Sbjct: 311 ---------PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 244 PNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYL---PGLMHLNLSRNAFNDLSYNRLQ 300
              L        L  L +++          +   L     L  L+LS N   D    +L 
Sbjct: 362 CQGLGQPGS--VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419

Query: 301 GSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKE 336
            S+      L     L+L + Y   E+  +L  L++
Sbjct: 420 ESVRQPGCLL---EQLVLYDIYWSEEMEDRLQALEK 452

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 68/354 (19%), Positives = 111/354 (31%), Gaps = 64/354 (18%)

Query: 33  SLRLLSLSYSRLNKNTILDQG-------FCQLVHLQELYIRDNDLRDS----LLGAWQ-- 79
           S ++  L    L    +   G          L  LQEL++ DN L D+    L       
Sbjct: 84  SCKIQKL---SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140

Query: 80  TTSLQELNVASNKLT----RNFPLGLCELVLLRELYIDNNDLS--GSLPLC---LTNLTS 130
              L++L +    L+          L      +EL + NND++  G   LC     +   
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query: 131 LQVLDVSYNQLTE---SISSSPLMLLTSIEELILSNNHFQ----IPISLEPLSNLSKLKA 183
           L+ L +    +T          +    S+ EL L +N         +    L   S+L+ 
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query: 184 FNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEF 243
                          +T K     +              L  +  LK   L+   L  E 
Sbjct: 261 LW--------IWECGITAK-GCGDLCRV-----------LRAKESLKELSLAGNELGDEG 300

Query: 244 PNWL--MPIHCLQKLATLDVSNNFFQGHIPVEIGTYL---PGLMHLNLSRNAFNDLSYNR 298
              L    +    +L +L V +  F         + L     L+ L +S N   D     
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 299 LQGSIPNWIDRLPQISYLLLANNYIEGE----IPAQLCQLKEVRLIDLSHNNLS 348
           L   +         +  L LA+  +       + A L     +R +DLS+N L 
Sbjct: 361 LCQGLGQ---PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 69/466 (14%), Positives = 135/466 (28%), Gaps = 128/466 (27%)

Query: 60  LQELYIRDNDLRDS----LLGAWQTTSLQELNVASNKLTRNFPLGLCELVL----LRELY 111
           +Q L I+  +L D+    LL   Q    Q + +    LT      +   +     L EL 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQ--CQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 112 IDNNDL--SGSLPLC---LTNLTSLQVLDVSYNQLTE----SISSSPLMLLTSIEELILS 162
           + +N+L   G   +     T    +Q L +    LT      +SS+ L  L +++EL LS
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLS 121

Query: 163 NNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLS----GYRDDGT 218
           +N     +    L  L +                  L P+ +L  + L            
Sbjct: 122 DNL----LGDAGLQLLCEGL----------------LDPQCRLEKLQLEYCSLSAASCEP 161

Query: 219 FPKFLYHQHDLKNADLSHLNLSGEFPNWLMPI--HCLQKLATLDVSNNFFQGHIPVEIGT 276
               L  + D K   +S+ +++      L         +L  L + +         ++  
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 277 YL---PGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ 333
            +     L  L L  N   D+    L                            P  L  
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAEL---------------------------CPGLLHP 254

Query: 334 LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKE 393
              +R + +    ++                               L             
Sbjct: 255 SSRLRTLWIWECGIT-------------------------AKGCGDLC------------ 277

Query: 394 ETVQILTSMSGIDLSCNKLTGEIPTQIG-----YLTRIRALNLSHNNLT--GTIPIT--F 444
             ++   S+  + L+ N+L  E    +         ++ +L +   + T       +   
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337

Query: 445 SNLKQIESLDLSYNLLHGKIPQLI------VLTTLAVFRVAYNNLS 484
           +  + +  L +S N L     + +        + L V  +A  ++S
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 35/162 (21%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQLV--------HLQELYIRDNDLRD-------SLLGA 77
           SL+ LSL+      N + D+G   L          L+ L+++             S+L  
Sbjct: 285 SLKELSLAG-----NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA- 338

Query: 78  WQTTSLQELNVASNKLTRNFPLGLCELVL-----LRELYIDNNDLS----GSLPLCLTNL 128
            Q   L EL +++N+L       LC+ +      LR L++ + D+S     SL   L   
Sbjct: 339 -QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397

Query: 129 TSLQVLDVSYNQLTES----ISSSPLMLLTSIEELILSNNHF 166
            SL+ LD+S N L ++    +  S       +E+L+L + ++
Sbjct: 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 34/158 (21%)

Query: 33  SLRLLSLSYSRLNKN--TILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ--------TTS 82
            L  L +          +       Q   L EL I +N L D+  G  +         + 
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA--GVRELCQGLGQPGSV 371

Query: 83  LQELNVASNKLTRNFPLGLCELVL-------LRELYIDNNDL--SGSLPLCL---TNLTS 130
           L+ L +A   ++ +       L         LREL + NN L  +G L L          
Sbjct: 372 LRVLWLADCDVSDS---SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 428

Query: 131 LQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI 168
           L+ L +     +E +          ++ L       ++
Sbjct: 429 LEQLVLYDIYWSEEM-------EDRLQALEKDKPSLRV 459

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 50/257 (19%), Positives = 87/257 (33%), Gaps = 43/257 (16%)

Query: 17  VEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSL-L 75
             V    +Q +  L  S + L L  + L   TI    F  L ++  +Y+  +     L  
Sbjct: 16  FRVTCKDIQRIPSLPPSTQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQQLES 73

Query: 76  GA-WQTTSLQELNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLP--LCLTNLTSL 131
            + +  + +  + + + +          + L LL+ L I N  L    P    + +    
Sbjct: 74  HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIF 132

Query: 132 QVLDVSYNQLTESISSSPLMLLTS-IEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYL 190
            +L+++ N    SI  +    L +    L L NN F    S++         AFNG    
Sbjct: 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT---SVQG-------YAFNGTKLD 182

Query: 191 ETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLM-- 248
               + N       LT I      D   F         + +   S L++S      +   
Sbjct: 183 AVYLNKNK-----YLTVI------DKDAF-------GGVYSG-PSLLDVSQ---TSVTAL 220

Query: 249 PIHCLQKLATLDVSNNF 265
           P   L+ L  L   N +
Sbjct: 221 PSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 43/256 (16%), Positives = 79/256 (30%), Gaps = 50/256 (19%)

Query: 100 GLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEEL 159
             CE     +  +   D+   +P   +   S Q L +    L  +I S     L +I  +
Sbjct: 6   PPCECHQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRI 60

Query: 160 ILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTF 219
            +S +     +      NLSK+      I +    +         LT I           
Sbjct: 61  YVSIDVTLQQLESHSFYNLSKVT----HIEI---RNTR------NLTYID------PDAL 101

Query: 220 PKFLYHQHDLKNADLSHLNLSG----EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIG 275
                   +L    L  L +       FP+    ++       L++++N +   IPV   
Sbjct: 102 -------KELPL--LKFLGIFNTGLKMFPDLTK-VYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 276 TYLPG-LMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ- 333
             L    + L L  N F          S+  +     ++  + L  N     I       
Sbjct: 152 QGLCNETLTLKLYNNGFT---------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202

Query: 334 -LKEVRLIDLSHNNLS 348
                 L+D+S  +++
Sbjct: 203 VYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 32/229 (13%), Positives = 66/229 (28%), Gaps = 66/229 (28%)

Query: 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN---------AFN--------DLSYNR 298
             TL +     +  IP    + LP +  + +S +         +F         ++   R
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 299 LQGSIP-NWIDRLPQISYLLLANNYIEGEIPAQ--LCQLKEVRLIDLSHNNLSGHIPFCL 355
               I  + +  LP + +L + N  ++   P    +       +++++ N     IP   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP--- 147

Query: 356 VNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSG-IDLSCNKLTG 414
                                                    Q L + +  + L  N  T 
Sbjct: 148 -------------------------------------VNAFQGLCNETLTLKLYNNGFT- 169

Query: 415 EIPTQIGYLTRIRALNLSHNNLTGTIPI-TFSNLKQ-IESLDLSYNLLH 461
            +       T++ A+ L+ N     I    F  +      LD+S   + 
Sbjct: 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 9/126 (7%)

Query: 43  RLNKNTILD-QGFCQLVHLQELYIRDNDLRD-SLLGAWQTTSLQELNVASNKLTR--NFP 98
           +L    I     +   V  +EL +R   +     LGA        ++ + N++ +   FP
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIRKLDGFP 61

Query: 99  LGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEE 158
                L  L+ L ++NN +          L  L  L ++ N L E     PL  L S+  
Sbjct: 62  ----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117

Query: 159 LILSNN 164
           L +  N
Sbjct: 118 LCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVAS 90
               R L L   ++     L      L     +   DN++R  L G      L+ L V +
Sbjct: 18  AVRDRELDLRGYKIPVIENLGA---TLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNN 73

Query: 91  NKLTRNFPLGLCELVLLRELYIDNNDLS--GSLPLCLTNLTSLQVLDVSYNQLTE 143
           N++ R        L  L EL + NN L   G L   L +L SL  L +  N +T 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 16/114 (14%)

Query: 237 LNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPV--EIGTYLPGLMHLNLSRNAFNDL 294
           + L+ E            +   LD+        IPV   +G  L     ++ S N    L
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGY----KIPVIENLGATLDQFDAIDFSDNEIRKL 57

Query: 295 SYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS 348
                          L ++  LL+ NN I          L ++  + L++N+L 
Sbjct: 58  DG----------FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 22/146 (15%)

Query: 31  MASLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLR-------DSLLGAWQTTS 82
           +  L  L+L Y   N+   L  G F  L  L  L + +N L        D L      T 
Sbjct: 58  LTKLTWLNLDY---NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL------TQ 108

Query: 83  LQELNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPL-CLTNLTSLQVLDVSYNQ 140
           L +L +  N+L    P G+ + L  L+EL ++ N L  S+P      LT+LQ L +S NQ
Sbjct: 109 LDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ 166

Query: 141 LTESISSSPLMLLTSIEELILSNNHF 166
           L  S+       L  ++ + L  N F
Sbjct: 167 LQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 58/270 (21%), Positives = 81/270 (30%), Gaps = 76/270 (28%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPL-CLTNLTSLQVLDVSYN 139
              ++L++ S  L          L  L  L +D N L  +L      +LT L  L ++ N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN 93

Query: 140 QLTESISSSPLMLLTSIEELILSNNHFQIPISLEP-----LSNLSKLKAFNGEIYLETES 194
           QL  S+       LT +++L L  N  +   SL       L+ L +L        L    
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLK---SLPSGVFDRLTKLKEL-------RL---- 138

Query: 195 HYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQ 254
           + N      QL SI        G F K                               L 
Sbjct: 139 NTN------QLQSIP------AGAFDK-------------------------------LT 155

Query: 255 KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF----NDLSYNRLQGSIPNWIDRL 310
            L TL +S N  Q  +P      L  L  + L  N F     ++ Y         WI   
Sbjct: 156 NLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDCSRCEILYLS------QWIREN 208

Query: 311 PQISYLLLANNYIEGEIPAQLCQLKEVRLI 340
                     N  E          K VR +
Sbjct: 209 SNKVKDGTGQNLHESPDGVTCSDGKVVRTV 238

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 32  ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASN 91
                + L +  +     +D     L   + L +  N++   +       +L+ L++  N
Sbjct: 23  TEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRN 80

Query: 92  KLTRNFPLGLCELVLLRELYIDNN---DLSGSLPLCLTNLTSLQVLDVSYNQLTESISSS 148
            + +   L       L EL+I  N    LSG     +  L +L+VL +S N++T      
Sbjct: 81  LIKKIENLDAV-ADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEID 134

Query: 149 PLMLLTSIEELILSNN 164
            L  L  +E+L+L+ N
Sbjct: 135 KLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 38/196 (19%)

Query: 123 LCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLK 182
           +  T    ++ L      + +  ++  L  L + + L LS N+ +    +  LS +  L+
Sbjct: 20  VVATEAEKVE-LHGMIPPIEKMDAT--LSTLKACKHLALSTNNIE---KISSLSGMENLR 73

Query: 183 AFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGE 242
                + L      N       +  I                +   + +  L  L +S  
Sbjct: 74  ----ILSL----GRN------LIKKIE---------------NLDAVADT-LEELWISYN 103

Query: 243 FPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRN--AFNDLSYNRLQ 300
               L  I  L  L  L +SNN       ++    L  L  L L+ N    +    N   
Sbjct: 104 QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

Query: 301 GSIPNWIDRLPQISYL 316
                 + RLP +  L
Sbjct: 164 EYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 393 EETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIES 452
           + T+  L +   + LS N +  +I + +  +  +R L+L  N +   I    +    +E 
Sbjct: 41  DATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 453 LDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
           L +SYN +   +  +  L  L V  ++ N ++
Sbjct: 98  LWISYNQIA-SLSGIEKLVNLRVLYMSNNKIT 128

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 7/126 (5%)

Query: 61  QELYIRDNDLRDSLLGAW--QTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLS 118
            EL + +N+           +   L+++N ++NK+T            + E+ + +N L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 119 GSLPL-CLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-IPI-SLEPL 175
            ++       L SL+ L +  N++T  + +   + L+S+  L L +N    +   + + L
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 176 SNLSKL 181
            +LS L
Sbjct: 153 HSLSTL 158

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 32/138 (23%)

Query: 33  SLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASN 91
            LR ++ S    NK T +++G F     + E+ +  N L +                   
Sbjct: 58  QLRKINFSN---NKITDIEEGAFEGASGVNEILLTSNRLEN------------------- 95

Query: 92  KLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPL-CLTNLTSLQVLDVSYNQLTESISSSP 149
                    + + L  L+ L + +N ++  +       L+S+++L +  NQ+T +++   
Sbjct: 96  -----VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148

Query: 150 LMLLTSIEELILSNNHFQ 167
              L S+  L L  N F 
Sbjct: 149 FDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 54/173 (31%)

Query: 293 DLSYNRLQGSIPNWI-DRLPQISYLLLANNYIEGEIPA----QLCQLKEVRLIDLSHNNL 347
            L+ N         I  +LPQ+  +  +NN I  +I          + E   I L+ N L
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNE---ILLTSNRL 93

Query: 348 SGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDL 407
                       +    +                                 L S+  + L
Sbjct: 94  ----------ENVQHKMFKG-------------------------------LESLKTLML 112

Query: 408 SCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPI-TFSNLKQIESLDLSYN 458
             N++T  +       L+ +R L+L  N +T T+    F  L  + +L+L  N
Sbjct: 113 RSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 30/196 (15%), Positives = 54/196 (27%), Gaps = 67/196 (34%)

Query: 129 TSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEP--LSNLSKLKAFNG 186
                L ++ N+ T   ++     L  + ++  SNN       +E       S +     
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT---DIEEGAFEGASGVN---- 84

Query: 187 EIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNW 246
           EI L      N      +L ++          F                           
Sbjct: 85  EILL----TSN------RLENV------QHKMFKG------------------------- 103

Query: 247 LMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW 306
                 L+ L TL + +N     +  +    L  +  L         L  N++  ++   
Sbjct: 104 ------LESLKTLMLRSNRIT-CVGNDSFIGLSSVRLL--------SLYDNQIT-TVAPG 147

Query: 307 I-DRLPQISYLLLANN 321
             D L  +S L L  N
Sbjct: 148 AFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 20/123 (16%)

Query: 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLS 287
            L N + + L  +G F         L +L  ++ SNN     I         G+  +   
Sbjct: 38  RLNNNEFTVLEATGIF-------KKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEI--- 86

Query: 288 RNAFNDLSYNRLQGSIPNWI-DRLPQISYLLLANNYIEGEIPAQL-CQLKEVRLIDLSHN 345
                 L+ NRL+ ++ + +   L  +  L+L +N I   +       L  VRL+ L  N
Sbjct: 87  -----LLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN 139

Query: 346 NLS 348
            ++
Sbjct: 140 QIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 47/171 (27%)

Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEG-EIPAQLCQLKEVRLIDLSHNNLSGHI 351
           D S  +L   IP  I      + L L NN     E      +L ++R I+ S+N +    
Sbjct: 17  DCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI---- 69

Query: 352 PFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNK 411
                 T + EG ++                                 + ++ I L+ N+
Sbjct: 70  ------TDIEEGAFEG-------------------------------ASGVNEILLTSNR 92

Query: 412 LTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461
           L   +  ++   L  ++ L L  N +T     +F  L  +  L L  N + 
Sbjct: 93  LE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 32  ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASN 91
            S     +   R     + ++    +  L     + ND +   L A    +L+ L++ + 
Sbjct: 1   GSSGSSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINV 59

Query: 92  KLTR--NFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSP 149
            L    N P    +L  L++L +  N + G L +    L +L  L++S N+L +  +  P
Sbjct: 60  GLISVSNLP----KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP 115

Query: 150 LMLLTSIEELILSNN 164
           L  L  ++ L L N 
Sbjct: 116 LKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 392 KEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIE 451
            E       ++  + L    L   + + +  L +++ L LS N + G + +    L  + 
Sbjct: 41  IEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98

Query: 452 SLDLSYNLL 460
            L+LS N L
Sbjct: 99  HLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 253 LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQ 312
              +  L + N          +      L  L+L       +S           + +LP+
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN----------LPKLPK 72

Query: 313 ISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS 348
           +  L L+ N I G +     +L  +  ++LS N L 
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 21/142 (14%)

Query: 32  ASLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLR-------DSLLGAWQTTSL 83
            + ++L L     N+ T L+ G F  L++L+ELY+  N L        DSL      T L
Sbjct: 40  TNAQILYLHD---NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL------TQL 90

Query: 84  QELNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLT 142
             L++ +N+LT   P  + + LV L+EL++  N L+  LP  +  LT L  L +  NQL 
Sbjct: 91  TVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL- 147

Query: 143 ESISSSPLMLLTSIEELILSNN 164
           +SI       L+S+    L  N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 37/169 (21%), Positives = 51/169 (30%), Gaps = 48/169 (28%)

Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYI---EGEIPAQLCQLKEVRLIDLSHNNLSG 349
            L  N++    P   D L  +  L L +N +      +   L QL     +DL  N L  
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV---LDLGTNQL-- 100

Query: 350 HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSC 409
                   T L    +D                                L  +  + + C
Sbjct: 101 --------TVLPSAVFDR-------------------------------LVHLKELFMCC 121

Query: 410 NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
           NKLT E+P  I  LT +  L L  N L       F  L  +    L  N
Sbjct: 122 NKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 61  QELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLS 118
            E+ +  N ++    GA+     L+ +++++N+++        + L  L  L +  N ++
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT 93

Query: 119 GSLPL-CLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-IPI-SLEPL 175
             LP      L SLQ+L ++ N++   +       L ++  L L +N  Q I   +  PL
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 176 SNLSKL 181
             +  +
Sbjct: 152 RAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 19/116 (16%)

Query: 33  SLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLR-------DSLLGAWQTTSLQ 84
            LR + LS    N+ + L    F  L  L  L +  N +        + L       SLQ
Sbjct: 57  KLRRIDLSN---NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL------FSLQ 107

Query: 85  ELNVASNKLTRNFPLGL-CELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN 139
            L + +NK+     +    +L  L  L + +N L        + L ++Q + ++ N
Sbjct: 108 LLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 51/171 (29%)

Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPA----QLCQLKEVRLIDLSHNNLS 348
            L  N ++   P       ++  + L+NN I  E+       L  L     + L  N + 
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNS---LVLYGNKI- 92

Query: 349 GHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLS 408
                    T L +  ++                                L S+  + L+
Sbjct: 93  ---------TELPKSLFEG-------------------------------LFSLQLLLLN 112

Query: 409 CNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
            NK+   +       L  +  L+L  N L      TFS L+ I+++ L+ N
Sbjct: 113 ANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 50/174 (28%)

Query: 129 TSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEP-----LSNLSKLKA 183
            ++  + +  N +   I          +  + LSNN       L P     L +L+ L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS---ELAPDAFQGLRSLNSL-- 85

Query: 184 FNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEF 243
                 L    + N      ++T +          F         L +  L  L L+   
Sbjct: 86  -----VL----YGN------KITEL------PKSLF-------EGLFS--LQLLLLNA-- 113

Query: 244 PNWLMPIHC-----LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN 292
            N +  +       L  L  L + +N  Q  I     + L  +  ++L++N F 
Sbjct: 114 -NKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 399 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
           L S++ + L  NK+T E+P  +   L  ++ L L+ N +       F +L  +  L L  
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 458 NLL----HGKIPQLIVLTTL 473
           N L     G    L  + T+
Sbjct: 138 NKLQTIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI-DR 309
              +KL  +D+SNN     +  +    L  L  L         L  N++   +P  + + 
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL--------VLYGNKIT-ELPKSLFEG 102

Query: 310 LPQISYLLLANNYIEGEIPAQL-CQLKEVRLIDLSHNNLS 348
           L  +  LLL  N I   +       L  + L+ L  N L 
Sbjct: 103 LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 73/492 (14%)

Query: 1   FHEFKNLEHLVMDQ------------MLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNT 48
              F NL  L +                    T ++  +S  +  L+ +      ++   
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 49  ILDQGFCQLVHLQELYIRD-NDLRDSLLG--AWQTTSLQELNVASNKLTRNFPLGLCELV 105
           +      +   L+ L +   +      L         ++ L +  +  +      L EL 
Sbjct: 129 LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL- 187

Query: 106 LLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLL----TSIEELIL 161
                                + TSL+VL+    +  + IS   L  +     S+  + +
Sbjct: 188 -------------------AQHNTSLEVLNFYMTEFAK-ISPKDLETIARNCRSLVSVKV 227

Query: 162 SNNHFQIPISL-EPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFP 220
            +      +   +  +NL +    +    +     Y +L    +L  + LS    +   P
Sbjct: 228 GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MP 286

Query: 221 KFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPG 280
                   ++  DL +  L  E  +    I     L  L+  N      +   +  Y   
Sbjct: 287 ILFPFAAQIRKLDLLYALLETE--DHCTLIQKCPNLEVLETRNVIGDRGL-EVLAQYCKQ 343

Query: 281 LMHLNLSRNAFNDLSYNRLQG----SIPNWIDRLPQISYLLLANNYIEGE----IPAQLC 332
           L  L + R A      +         +        ++ Y+ +  + I  E    I   L 
Sbjct: 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403

Query: 333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYF-----SPNG 387
            L + RL+ L        +P      +L  G                L  F         
Sbjct: 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIG-------------CKKLRRFAFYLRQGGL 450

Query: 388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIG-YLTRIRALNLSHNNLT-GTIPITFS 445
           + +G     Q   ++  + L     + E   +       ++ L +     +   I    +
Sbjct: 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510

Query: 446 NLKQIESLDLSY 457
            L  +  L +  
Sbjct: 511 KLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 55/374 (14%), Positives = 121/374 (32%), Gaps = 41/374 (10%)

Query: 5   KNLEHLVMDQ-MLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVH---- 59
           + ++ L+M++    E +  +L  +++   SL +L+   +   K  I  +    +      
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK--ISPKDLETIARNCRS 221

Query: 60  LQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSG 119
           L  + + D ++ + +       +L+E    S       P     LV  R+L        G
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281

Query: 120 --SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLS- 176
              +P+       ++ LD+ Y  L      + +    ++E L   N        LE L+ 
Sbjct: 282 PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD--RGLEVLAQ 339

Query: 177 ---NLSKLKAFNGEIYLETESHYNSLTPK---------FQLTSISLSGYR-DDGTFPKFL 223
               L +L+   G      E     ++ +          +L  +++      + +     
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 224 YHQHDLKNADLSHLNLSGEFPNWLM------PIHCLQKLATLDVSNNFFQ--GHIPVEIG 275
            +  +L +  L  L+      +  +       +   +KL                   IG
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459

Query: 276 TYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYI-EGEIPAQLCQL 334
            Y P +  + L     +D         +  +    P +  L +      E  I A + +L
Sbjct: 460 QYSPNVRWMLLGYVGESDE-------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512

Query: 335 KEVRLIDLSHNNLS 348
             +R + +     S
Sbjct: 513 PSLRYLWVQGYRAS 526

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 51/383 (13%), Positives = 102/383 (26%), Gaps = 102/383 (26%)

Query: 31  MASLRLLSLSYSRLNKNTILDQGFCQLV-------HLQELYIRDNDLRDSLLGA------ 77
           MA   +   S   L  + I  +    +         ++E+ +  N +      A      
Sbjct: 1   MARFSIEGKS---LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTE--AARWLSEN 55

Query: 78  -WQTTSLQELNVASNKLTRNFPLG----------LCELVLLRELYIDNNDLS--GSLPLC 124
                 L+    +     R               L +   L  + + +N        PL 
Sbjct: 56  IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 125 --LTNLTSLQVLDVSYNQ------------LTESISSSPLMLLTSIEELILSNNHFQIPI 170
             L+  T L+ L +  N             L E   +        +  +I   N     +
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR----L 171

Query: 171 SLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLS--GYRDDG---TFPKFLYH 225
               +   +K    +                   L ++ +   G R +G      + L +
Sbjct: 172 ENGSMKEWAKTFQSHR-----------------LLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 226 QHDLKNADLSHLNLSGEFPNWLMP---------IHCLQKLATLDVSNNFFQGHIPVEIGT 276
                  +L  L+L     N             +     L  L +++          +  
Sbjct: 215 -----CQELKVLDLQD---NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266

Query: 277 YL-----PGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYI--EGEIPA 329
                   GL  L L  N     +   L+  I     ++P + +L L  N    E ++  
Sbjct: 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE---KMPDLLFLELNGNRFSEEDDVVD 323

Query: 330 QLCQLKEVR----LIDLSHNNLS 348
           ++ ++   R    L +L      
Sbjct: 324 EIREVFSTRGRGELDELDDMEEL 346

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 4e-08
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 3/108 (2%)

Query: 61  QELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLG-LCELVLLRELYIDNNDLSG 119
             L    +   DSL       +L EL + + +  ++  L  L  L  LR L I  + L  
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 120 SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ 167
             P        L  L++S+N L  S+S   +  L S++EL+LS N   
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 399 LTSMSGIDLSCNKLTGEIPTQ-IGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
             +++ + +   +    +  + +  L  +R L +  + L    P  F    ++  L+LS+
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 458 NLLHGKIPQLIVLTTLAVFRVAYNNL 483
           N L     + +   +L    ++ N L
Sbjct: 90  NALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 8e-05
 Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 6/106 (5%)

Query: 406 DLSC-NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP-ITFSNLKQIESLDLSYNLLHGK 463
            L C      +    +     +  L + +      +       L ++ +L +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-F 70

Query: 464 IPQ--LIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF 507
           +          L+   +++N L   +  +  Q  + +E    GNP 
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 77/527 (14%), Positives = 149/527 (28%), Gaps = 161/527 (30%)

Query: 57  LVHLQELYIRD---NDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYID 113
           L   ++ ++ +    D++D          +  + ++ + ++            LR  +  
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG----------TLRLFWT- 70

Query: 114 NNDLSGSLPLCLTNLTSLQ-----VLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI 168
                    L       +Q     VL ++Y  L   I +                     
Sbjct: 71  ---------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ------------------- 102

Query: 169 PISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYH--- 225
                      +  +    +Y       + L             Y D+  F K  Y+   
Sbjct: 103 -----------RQPSMMTRMY---IEQRDRL-------------YNDNQVFAK--YNVSR 133

Query: 226 ---QHDLKNADLSHLNLSGEFPNWLMPIH--------CLQKLATLDVSNNFFQGHIPVEI 274
                 L+ A L  L      P   + I          +     LDV  ++       ++
Sbjct: 134 LQPYLKLRQA-LLELR-----PAKNVLIDGVLGSGKTWV----ALDVCLSY-------KV 176

Query: 275 GTYLPGLMH-LNLSRNAFNDLSYNRLQG----SIPNWIDRLPQISYLLLANNYIEGEIPA 329
              +   +  LNL      +     LQ       PNW  R    S + L  + I+ E+  
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 330 QLCQLKEVR-LIDLSHNNLSGHI-PF---C--LVNTALSEGYYDAVAPTWDHASAPALSY 382
            L        L+ L +   +     F   C  L+ T      +  V    D  SA   ++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-----FKQVT---DFLSAATTTH 288

Query: 383 FSPNGSPMG--KEETVQILTSMSGIDLSCNKLTGEI----P---TQIGYLTRIRA----- 428
            S +   M    +E   +L     +D     L  E+    P   + I    R        
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 429 -LNLSHNNLTGTIPITFSNLKQIESLDLSYNLL-----HGKIPQLIVLTTLAVFRVAYNN 482
             +++ + LT  I  + + L+  E   + ++ L        IP  I+L+ +      + +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIP-TILLSLI------WFD 398

Query: 483 LSGKIPDRVAQ----FSTFEEDSYEGNPFLYGQPLSKSCDDNGLTTV 525
           +       V      +S  E+   E    +    L           +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 9/144 (6%)

Query: 28  SELMASLRLLSLSYSRLNKNTI-LDQGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSLQE 85
           ++ +    L S+     N + I   QG   L +++ L +  N L D  + A +  T+L  
Sbjct: 32  TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTY 89

Query: 86  LNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPLCLTN-LTSLQVLDVSYNQLTE 143
           L +  N+L  + P G+ + L  L+EL +  N L  SLP  + + LT+L  L++++NQL  
Sbjct: 90  LILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ- 146

Query: 144 SISSSPLMLLTSIEELILSNNHFQ 167
           S+       LT++ EL LS N  Q
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQ 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 21/142 (14%)

Query: 35  RLLSLSYSRLNKN--TILDQG-FCQLVHLQELYIRDNDLR-------DSLLGAWQTTSLQ 84
            L +L+Y  L  N    L  G F +L +L+EL + +N L+       D L      T+L 
Sbjct: 83  ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL------TNLT 136

Query: 85  ELNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPL-CLTNLTSLQVLDVSYNQLT 142
            LN+A N+L    P G+ + L  L EL +  N L  SLP      LT L+ L +  NQL 
Sbjct: 137 YLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 143 ESISSSPLMLLTSIEELILSNN 164
            S+       LTS++ + L +N
Sbjct: 195 -SVPDGVFDRLTSLQYIWLHDN 215

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 49  ILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTR--NFPLGLCELVL 106
           + ++    +  L     R N+ +   L       L+ L+  +  LT   N P    +L  
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSIANLP----KLNK 65

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNN 164
           L++L + +N +SG L +      +L  L++S N++ +  +  PL  L +++ L L N 
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 59/343 (17%), Positives = 103/343 (30%), Gaps = 84/343 (24%)

Query: 44  LNKNTILDQGFCQLV--------HLQELYIRDNDLRDS----LLGAWQ--TTSLQELNVA 89
           +N    L  G    V         +  L +  N+L       L+ A+     S+  LN++
Sbjct: 1   MNYKLTLHPG-SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS 59

Query: 90  SNKLTRNFPLGLCELVL-----LRELYIDNNDLS--GSLPLC---LTNLTSLQVLDVSYN 139
            N L       L +++      +  L +  N LS   S  L         ++ VLD+ +N
Sbjct: 60  GNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN 119

Query: 140 QLTES----ISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSK-LKAFNGEIYLETES 194
             +         +   L  SI  L L  N     + ++    L + L A           
Sbjct: 120 DFSSKSSSEFKQAFSNLPASITSLNLRGND----LGIKSSDELIQILAAIPA-------- 167

Query: 195 HYNSLTPKFQLTSISLS--GYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHC 252
                     + S++L              L        A ++ L+LS    N L     
Sbjct: 168 ---------NVNSLNLRGNNLASKNC--AELAKFLASIPASVTSLDLSA---NLLGL-KS 212

Query: 253 LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQ 312
             +LA +  S                  ++ LNL  N  +  S   L+       D L  
Sbjct: 213 YAELAYIFSSIP--------------NHVVSLNLCLNCLHGPSLENLKLLK----DSLKH 254

Query: 313 ISYLLLANNYIEGEIPAQLCQLKEV-------RLIDLSHNNLS 348
           +  + L  + ++     Q   L           L+D +   + 
Sbjct: 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 46/350 (13%), Positives = 98/350 (28%), Gaps = 83/350 (23%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQLV--------HLQELYIRDNDLRD-------SLLGA 77
            +  L LS      N +      +L+         +  L +  N L          +L A
Sbjct: 23  GVTSLDLSL-----NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 78  WQTTSLQELNVASNKLTRNFPLGLCELVL-----LRELYIDNNDLS--GSLPLC---LTN 127
               ++  LN++ N L+      L + +      +  L +  ND S   S          
Sbjct: 78  -IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 128 LTSLQVLDVSYNQLTE----SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSK-LK 182
             S+  L++  N L       +      +  ++  L L  N+    ++ +  + L+K L 
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN----LASKNCAELAKFLA 192

Query: 183 AFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGE 242
           +                     +TS+ LS               + L     + L     
Sbjct: 193 SIPA-----------------SVTSLDLSA--------------NLLGLKSYAELAYIFS 221

Query: 243 FPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYL---PGLMHLNLSRNAFNDLSYNRL 299
                        + +L++  N   G     +         L  + L  +   ++S  + 
Sbjct: 222 SIP--------NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC 273

Query: 300 QGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG 349
           + ++      + +I  +      I       +  L           +L  
Sbjct: 274 K-ALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLN 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 34/161 (21%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQLV--------HLQELYIRDNDLRDS---LLGAWQT- 80
           S+  L LS      N +  + + +L         H+  L +  N L       L   +  
Sbjct: 197 SVTSLDLSA-----NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 81  -TSLQELNVASNKLTRNFPLGLCELVL-------LRELYIDNNDLSGSLPLCLTNL---- 128
              LQ + +  + +          L         +  +  +  ++  S  + ++NL    
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIREL 311

Query: 129 -TSLQVLDVSYNQLTE----SISSSPLMLLTSIEELILSNN 164
                V  +    L        +   L +   + E I +  
Sbjct: 312 SGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 47/190 (24%)

Query: 24  LQIVSELMASLRLLSLSYSR------------------------LNKNTILDQGFCQLV- 58
            +  +E+++SLR L+L+  R                        L    +   G   L+ 
Sbjct: 64  QRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP 123

Query: 59  ---HLQELYIRDNDLRDS---LLG---AWQTTSLQELNVASNKLTRNFPLGLCELVL--- 106
                ++L ++ N L       L          +  L +++N LT      L E +    
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183

Query: 107 -LRELYIDNNDLS--GSLPLC--LTNLTSLQVLDVSYNQLT----ESISSSPLMLLTSIE 157
            +  L + +  L   G   L   L     LQ L+V+YN        +++ +      S+E
Sbjct: 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA-AREHPSLE 242

Query: 158 ELILSNNHFQ 167
            L L  N   
Sbjct: 243 LLHLYFNELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 28/163 (17%)

Query: 25  QIVSELMASLRLLSLSYSRLNKNTILDQGFCQLV--HLQELYIRDNDLRDS----LLGAW 78
           ++  +++    LL   +         +Q F   V   L++L +    +       +    
Sbjct: 40  KLGRQVLPPSELLDHLFFHYEFQ---NQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVL 96

Query: 79  Q--TTSLQELNVASNKLTRNFPLGLCEL--VL--LRELYIDNNDLS--GSLPLC---LTN 127
                +L E+N+AS +L    P GL  L  V    R+L +  N L       L    L +
Sbjct: 97  GSGRHALDEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD 153

Query: 128 LTSLQVLDVSYNQLTES----ISSSPLMLLTSIEELILSNNHF 166
              +  L +S N LT +    +    L   TS+  L L +   
Sbjct: 154 QCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLHTGL 195

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 26/142 (18%)

Query: 24  LQIVSELMASLRLLSLSYSRLNKNTILDQGFCQL--------VHLQELYIRDNDLRDS-- 73
           L+ +  +    R L L       N++  +    L          +  L + +N L  +  
Sbjct: 118 LRTLLPVFLRARKLGLQL-----NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV 172

Query: 74  -LLGA--WQTTSLQELNVASNKLTRNFPLGLCELVL----LRELYIDNNDL--SGSLPLC 124
            +L       TS+  L++    L       L   +     L+EL +  N    + +L L 
Sbjct: 173 AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232

Query: 125 --LTNLTSLQVLDVSYNQLTES 144
                  SL++L + +N+L+  
Sbjct: 233 RAAREHPSLELLHLYFNELSSE 254

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 17/142 (11%)

Query: 20  NTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQEL--------YIRDNDLR 71
            T+ L I  +   +L+ L +    L  + + D     L +L++L        Y  D D+ 
Sbjct: 181 GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240

Query: 72  D--SLLGAWQTTSLQELNVASNKLTRNFPLGLCE---LVLLRELYIDNNDLSGS----LP 122
               L    +  +L+ L +   +          E   L  L  + I    L+      L 
Sbjct: 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300

Query: 123 LCLTNLTSLQVLDVSYNQLTES 144
             +  +  L+ +++ YN L++ 
Sbjct: 301 DHVDKIKHLKFINMKYNYLSDE 322

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 81  TSLQELNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPLCL-TNLTSLQVLDVSY 138
               EL +  N+L R    GL   L  L +L +  N L+  +        + +Q L +  
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGE 87

Query: 139 NQLTESISSSPLMLLTSIEELILSNNHFQ-IP 169
           N++   IS+   + L  ++ L L +N    + 
Sbjct: 88  NKIK-EISNKMFLGLHQLKTLNLYDNQISCVM 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 108 RELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ 167
            ELY+D N  +  +P  L+N   L ++D+S N+++ ++S+     +T +  LILS N  +
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 168 IPISLEP-----LSNLSKL 181
               + P     L +L  L
Sbjct: 92  ---CIPPRTFDGLKSLRLL 107

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
           I   ++ + L  N+ T  +P ++     +  ++LS+N ++     +FSN+ Q+ +L LSY
Sbjct: 29  IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87

Query: 458 NLLHGKIPQLIV--LTTLAVFRVAYNNLSGKIPD 489
           N L   IP      L +L +  +  N++S  +P+
Sbjct: 88  NRLRC-IPPRTFDGLKSLRLLSLHGNDIS-VVPE 119

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 32/136 (23%)

Query: 32  ASLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVAS 90
           +S   L L     NK   L  G F +L  L +L +  N          Q  SL       
Sbjct: 28  SSATRLELES---NKLQSLPHGVFDKLTQLTKLSLSQN----------QIQSL------- 67

Query: 91  NKLTRNFPLGLC-ELVLLRELYIDNNDLSGSLPL-CLTNLTSLQVLDVSYNQLTESISSS 148
                  P G+  +L  L  LY+  N L  SLP      LT L+ L +  NQL +S+   
Sbjct: 68  -------PDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQL-KSVPDG 118

Query: 149 PLMLLTSIEELILSNN 164
               LTS++++ L  N
Sbjct: 119 IFDRLTSLQKIWLHTN 134

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 58/381 (15%), Positives = 128/381 (33%), Gaps = 52/381 (13%)

Query: 4   FKNLEHL-VMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVH--- 59
            +NL+ L + +  + +V+  +L    +   SL  L++S        +      +LV    
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE---VSFSALERLVTRCP 211

Query: 60  -LQELYIRDNDLRDSLLGAWQ-TTSLQELNVA--SNKLTRNFPLGLCELVL----LRELY 111
            L+ L +      + L    Q    L+EL     + ++  +   GL   +     LR L 
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271

Query: 112 IDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPIS 171
              + +   LP   +  + L  L++SY  +        L     ++ L + +      I 
Sbjct: 272 GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-----IE 326

Query: 172 LEPL----SNLSKLKAFN-GEIYLETESHYNSLTPK---------FQLTSISLSGYR-DD 216
              L    S    L+                +LT +          +L S+     +  +
Sbjct: 327 DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386

Query: 217 GTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMP--------IHCLQKLATLDVSNNFFQG 268
                   ++ ++    L  +         L P        +   + L  L +S      
Sbjct: 387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTD 445

Query: 269 HIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLAN-NYIEGEI 327
            +   IGTY   +  L+++    +DL  + +       +     +  L + +  + +  +
Sbjct: 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV-------LSGCDSLRKLEIRDCPFGDKAL 498

Query: 328 PAQLCQLKEVRLIDLSHNNLS 348
            A   +L+ +R + +S  ++S
Sbjct: 499 LANASKLETMRSLWMSSCSVS 519

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 20/110 (18%)

Query: 35  RLLSLSYSRLNKNTI--LDQG-FCQLVHLQELYIRDNDLR-------DSLLGAWQTTSLQ 84
            L SL+   L  N +  L  G F +L  L  L +  N L+       D L      T L+
Sbjct: 50  ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL------TQLK 103

Query: 85  ELNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLSGSLPL-CLTNLTSLQ 132
           EL + +N+L    P G+ + L  L++L +  N L  S+P      LTSLQ
Sbjct: 104 ELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQ 151

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTN-LTSLQVLDVSYN 139
                L++ +N L         EL  L +LY+  N L  SLP  + N LTSL  L++S N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86

Query: 140 QLTESISSSPLMLLTSIEELILSNNHFQ 167
           QL  S+ +     LT ++EL L+ N  Q
Sbjct: 87  QLQ-SLPNGVFDKLTQLKELALNTNQLQ 113

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 30/133 (22%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQL-------VHLQELYIRDNDLRDSLLGAW------- 78
            L  ++L+    N   I                ++++  I      D    A+       
Sbjct: 37  DLEEVNLN----NIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP--VAFALAEMLK 90

Query: 79  QTTSLQELNVASNKLTRNFPLGLCELVL----LRELYIDNNDLS------GSLPLCLTNL 128
              +L+ LNV SN ++ +  L L E +     L EL IDN            +   L   
Sbjct: 91  VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN 150

Query: 129 TSLQVLDVSYNQL 141
           T+L      + Q 
Sbjct: 151 TTLLKFGYHFTQQ 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	603
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.47
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.5
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.42
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.21
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.85

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.4e-55  Score=487.57  Aligned_cols=472  Identities=31%  Similarity=0.435  Sum_probs=314.1

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE  109 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (603)
                      +++|++|++++|.+.+.  .+. +.++++|++|++++|.+++..+..+. +++|++|++++|.+.+..|..  .+++|++
T Consensus       199 l~~L~~L~Ls~n~l~~~--~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~  273 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTG--IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY  273 (768)
T ss_dssp             CTTCCEEECCSSCCCSC--CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred             CCcCCEEECcCCcCCCC--Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence            34444444444444331  111 44555555555555555444444444 455555555555544433332  4444555


Q ss_pred             EeccCCCCccCcCccCCCC-CCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccc
Q 036984          110 LYIDNNDLSGSLPLCLTNL-TSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI  188 (603)
Q Consensus       110 L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~  188 (603)
                      |++++|.+++.+|..+.+. ++|++|++++|.+++.+|. .+..+++|++|++++|.+.+..+...+.++++|+.+++..
T Consensus       274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred             EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence            5555555544555555543 6666666666666655555 5666777777777777666555544455566666655552


Q ss_pred             eeeeccC-------------------------CCCCCC--cccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccC
Q 036984          189 YLETESH-------------------------YNSLTP--KFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSG  241 (603)
Q Consensus       189 ~~~~~~~-------------------------~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~  241 (603)
                      +......                         ...+..  ..+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus       353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  432 (768)
T 3rgz_A          353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG  432 (768)
T ss_dssp             SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence            2221111                         111111  3456777777777666677777777788888888887777


Q ss_pred             CCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCc----------------ccccCCcCcccCCc
Q 036984          242 EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF----------------NDLSYNRLQGSIPN  305 (603)
Q Consensus       242 ~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l----------------~~l~~~~~~~~~~~  305 (603)
                      ..|..   +..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+                +++++|.+.+.+|.
T Consensus       433 ~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  508 (768)
T 3rgz_A          433 TIPSS---LGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK  508 (768)
T ss_dssp             CCCGG---GGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             cccHH---HhcCCCCCEEECCCCcccCcCCHHHcC-CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence            77765   566777888888888877667665554 77888888887765                35566777777777


Q ss_pred             cccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEec
Q 036984          306 WIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSP  385 (603)
Q Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (603)
                      +++.+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|..+...........        ........+..
T Consensus       509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~--------~~~~~~~~~~~  580 (768)
T 3rgz_A          509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF--------IAGKRYVYIKN  580 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST--------TCSCEEEEEEC
T ss_pred             HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc--------ccccccccccc
Confidence            7777777777777777777777777777777777777777777777776654331111000        00000000000


Q ss_pred             C----------------C---------------------CCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCE
Q 036984          386 N----------------G---------------------SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA  428 (603)
Q Consensus       386 ~----------------~---------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  428 (603)
                      .                +                     ........+..+++|+.|++++|++++.+|..++.+++|+.
T Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  660 (768)
T 3rgz_A          581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI  660 (768)
T ss_dssp             CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred             ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence            0                0                     00001123455789999999999999999999999999999


Q ss_pred             EecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcC
Q 036984          429 LNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF  507 (603)
Q Consensus       429 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~  507 (603)
                      |+|++|++++.+|..|+++++|+.||+++|++++.+| .+..+++|++|++++|+++|.+|.. +++.++....+.|||.
T Consensus       661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~  739 (768)
T 3rgz_A          661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPG  739 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTE
T ss_pred             EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCch
Confidence            9999999999999999999999999999999999999 8999999999999999999999985 7888999999999999


Q ss_pred             CCCCCCCCCCCCCCC
Q 036984          508 LYGQPLSKSCDDNGL  522 (603)
Q Consensus       508 ~c~~~~~~~C~~~~~  522 (603)
                      +|+.|+. .|.....
T Consensus       740 Lcg~~l~-~C~~~~~  753 (768)
T 3rgz_A          740 LCGYPLP-RCDPSNA  753 (768)
T ss_dssp             EESTTSC-CCCSCC-
T ss_pred             hcCCCCc-CCCCCcc
Confidence            9999987 8975543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.7e-51  Score=454.20  Aligned_cols=453  Identities=26%  Similarity=0.339  Sum_probs=287.3

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE  109 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (603)
                      +++|++|++++|.+.+.    ..+..+++|++|++++|.+.+..+. +. +++|++|++++|.+++..|..+.++++|++
T Consensus       177 l~~L~~L~Ls~n~l~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  251 (768)
T 3rgz_A          177 CGELKHLAISGNKISGD----VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL  251 (768)
T ss_dssp             CTTCCEEECCSSEEESC----CBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred             CCCCCEEECCCCccccc----CCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence            44455555555544431    1234556666666666665554444 33 566666666666666555556666666666


Q ss_pred             EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984          110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY  189 (603)
Q Consensus       110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~  189 (603)
                      |++++|.+++..|..  .+++|++|++++|.+++.+|......+++|++|++++|.+.+..+ ..+.++++|+.+++..+
T Consensus       252 L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n  328 (768)
T 3rgz_A          252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSN  328 (768)
T ss_dssp             EECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC-GGGGGCTTCCEEECCSS
T ss_pred             EECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc-hHHhcCCCccEEECCCC
Confidence            666666665544433  556666666666666555555222233666666666666653322 34555566666665532


Q ss_pred             eee-ccCCCCCCCcccccEEeccCCCCCCCcChhhccCC-CCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccc
Q 036984          190 LET-ESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQH-DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQ  267 (603)
Q Consensus       190 ~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~  267 (603)
                      ... ......+..+++|+.|++++|.+.+.+|..+..++ +|+.|++++|.+.+.+|.++.. ..+++|++|++++|.+.
T Consensus       329 ~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~  407 (768)
T 3rgz_A          329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ-NPKNTLQELYLQNNGFT  407 (768)
T ss_dssp             EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC-STTCCCCEEECCSSEEE
T ss_pred             cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh-cccCCccEEECCCCccc
Confidence            222 11111134455667777777766666666666665 6677777766666655554211 12556777777777776


Q ss_pred             ccCChhhhhcCCCCcEEecCCCCcc----------------cccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccc
Q 036984          268 GHIPVEIGTYLPGLMHLNLSRNAFN----------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQL  331 (603)
Q Consensus       268 ~~~~~~~~~~l~~L~~L~L~~n~l~----------------~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  331 (603)
                      +.+|..+.. +++|+.|++++|.+.                +++.|.+.+.+|..++.+++|++|++++|++++..|..+
T Consensus       408 ~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  486 (768)
T 3rgz_A          408 GKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL  486 (768)
T ss_dssp             EECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             cccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence            666655544 677777777766542                334444445555555555555555555555555555555


Q ss_pred             cCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCC--CcchhhhhcccceEEECcC
Q 036984          332 CQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPM--GKEETVQILTSMSGIDLSC  409 (603)
Q Consensus       332 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~Ls~  409 (603)
                      ..+++|++|++++|++++.+|..+..++                   .+..+...++..  .....+..+++|+.|++++
T Consensus       487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~-------------------~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  547 (768)
T 3rgz_A          487 SNCTNLNWISLSNNRLTGEIPKWIGRLE-------------------NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT  547 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCT-------------------TCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred             hcCCCCCEEEccCCccCCcCChHHhcCC-------------------CCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence            5555555555555555555555444432                   333333333222  2345667788899999999


Q ss_pred             CCCcccCchhc---------------------------------------------------------------------
Q 036984          410 NKLTGEIPTQI---------------------------------------------------------------------  420 (603)
Q Consensus       410 n~l~~~~~~~l---------------------------------------------------------------------  420 (603)
                      |.+++.+|..+                                                                     
T Consensus       548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~  627 (768)
T 3rgz_A          548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT  627 (768)
T ss_dssp             SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred             CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence            98877666543                                                                     


Q ss_pred             -cCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCC
Q 036984          421 -GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFE  498 (603)
Q Consensus       421 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~  498 (603)
                       ..+++|+.|+|++|++++.+|..|+++++|+.|++++|++++.+| .+..+++|+.||+++|+++|.+|..+..++.++
T Consensus       628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence             335789999999999999999999999999999999999999999 899999999999999999999999999999999


Q ss_pred             cccccCCcCCCCCC
Q 036984          499 EDSYEGNPFLYGQP  512 (603)
Q Consensus       499 ~~~l~gn~~~c~~~  512 (603)
                      .+++++|++....|
T Consensus       708 ~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          708 EIDLSNNNLSGPIP  721 (768)
T ss_dssp             EEECCSSEEEEECC
T ss_pred             EEECcCCcccccCC
Confidence            99999998766444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.7e-49  Score=426.11  Aligned_cols=500  Identities=20%  Similarity=0.165  Sum_probs=327.5

Q ss_pred             HHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcC
Q 036984           25 QIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCE  103 (603)
Q Consensus        25 ~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~  103 (603)
                      .+|....+.+++|++++|.++..  .+..|.++++|++|++++|.+..+.+..|. +++|++|++++|.+.+..|..|++
T Consensus        26 ~iP~~l~~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  103 (606)
T 3t6q_A           26 EIPGTLPNSTECLEFSFNVLPTI--QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG  103 (606)
T ss_dssp             SCCTTSCTTCCEEECTTCCCSEE--CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred             cCcCCCCCcCcEEEccCCccCcC--ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence            44444556777777777777642  345677777777777777777777777666 777777777777777766777777


Q ss_pred             CCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCc-
Q 036984          104 LVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLK-  182 (603)
Q Consensus       104 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~-  182 (603)
                      +++|++|++++|.+++..+..++++++|++|++++|.+.+.... .+..+++|++|++++|.+.... ...+..+++|+ 
T Consensus       104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  181 (606)
T 3t6q_A          104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATN  181 (606)
T ss_dssp             CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEEC-HHHHHTTTTCCS
T ss_pred             cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc-cccCCcccCEEEcccCcccccC-hhhhhhhcccce
Confidence            77777777777777765566677777777777777777642212 3444777777777777665322 12333444444 


Q ss_pred             -eeeccce---eeeccCCC----------------------------------------------CCCCc--ccccEEec
Q 036984          183 -AFNGEIY---LETESHYN----------------------------------------------SLTPK--FQLTSISL  210 (603)
Q Consensus       183 -~l~~~~~---~~~~~~~~----------------------------------------------~~~~~--~~L~~L~l  210 (603)
                       .++...+   ......+.                                              .+...  .+++.+++
T Consensus       182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l  261 (606)
T 3t6q_A          182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL  261 (606)
T ss_dssp             EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred             eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence             2332211   11110000                                              00001  16788888


Q ss_pred             cCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCC
Q 036984          211 SGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNA  290 (603)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~  290 (603)
                      ++|.+.+..+..+..+++|+.|++++|.++ .+|.+   +..+++|++|++++|.+. .++...+..+++|++|++++|.
T Consensus       262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~---l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG---LVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             TTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS---CCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCS
T ss_pred             ecCccCccCHHHhccccCCCEEeccCCccC-CCChh---hcccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCC
Confidence            888888777777888888888888888887 56665   567788888888888887 3433444457888888888776


Q ss_pred             cccccCCcCcccC-CccccCCCCCCEEeccCCcCcccC--CccccCCCCCCEEecCCCcCccCCChhhhcccccccc---
Q 036984          291 FNDLSYNRLQGSI-PNWIDRLPQISYLLLANNYIEGEI--PAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGY---  364 (603)
Q Consensus       291 l~~l~~~~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~---  364 (603)
                      +..        .+ +..++.+++|++|++++|.+++..  +..+..+++|++|++++|++.+..|..+..++.....   
T Consensus       337 ~~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  408 (606)
T 3t6q_A          337 KRL--------ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA  408 (606)
T ss_dssp             SCC--------BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred             ccc--------ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence            531        11 122444556666666666655443  4455555666666666666555545444433321111   


Q ss_pred             ---cCCCCCCCcCCCCCCeeEEecCCCCC--CcchhhhhcccceEEECcCCCCccc---CchhccCcCcCCEEecccccc
Q 036984          365 ---YDAVAPTWDHASAPALSYFSPNGSPM--GKEETVQILTSMSGIDLSCNKLTGE---IPTQIGYLTRIRALNLSHNNL  436 (603)
Q Consensus       365 ---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls~N~l  436 (603)
                         .....+.........+..+...+...  .....+..+++|++|++++|.+++.   .+..+..+++|++|++++|++
T Consensus       409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l  488 (606)
T 3t6q_A          409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL  488 (606)
T ss_dssp             TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred             CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence               00011111122334455555444332  3345577799999999999999863   335688999999999999999


Q ss_pred             cccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCCCC
Q 036984          437 TGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSK  515 (603)
Q Consensus       437 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~~~  515 (603)
                      ++..|..|.++++|++|++++|++++.+| .+..++.| .|++++|++++..|..+..++.++.++++|||+.|.++...
T Consensus       489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~  567 (606)
T 3t6q_A          489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY  567 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHH
T ss_pred             CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHH
Confidence            99999999999999999999999998888 88999999 99999999999889888999999999999999999543210


Q ss_pred             -------CCCCCCCCcccccccccccCCCCcccc
Q 036984          516 -------SCDDNGLTTVTTEAYTENEEGGSLIDM  542 (603)
Q Consensus       516 -------~C~~~~~~~~~~~~~~~~~~~~~~~~~  542 (603)
                             .-..........|..|+..++....+.
T Consensus       568 ~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~  601 (606)
T 3t6q_A          568 FLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDV  601 (606)
T ss_dssp             HHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGC
T ss_pred             HHHHHHhCcccccCCCCCeeCCchHhCCCeeeee
Confidence                   000001223445666666666655444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.8e-48  Score=427.11  Aligned_cols=500  Identities=18%  Similarity=0.132  Sum_probs=352.3

Q ss_pred             CCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCC
Q 036984            5 KNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSL   83 (603)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L   83 (603)
                      +++++|++++|.+.....  . ....+++|++|++++|.+...  .+..|.++++|++|++++|.++.+++..|. +++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~--~-~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPA--A-NFTRYSQLTSLDVGFNTISKL--EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL   99 (680)
T ss_dssp             TTCSEEECCSSCCCCCCG--G-GGGGGTTCSEEECCSSCCCCC--CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEECCCCCCCCcCH--H-HHhCCCcCcEEECCCCccCcc--CHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence            468888888877653221  1 122367888888888887753  346678888888888888888888877776 8888


Q ss_pred             CEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCccccc--CCCCCcEEEc
Q 036984           84 QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLM--LLTSIEELIL  161 (603)
Q Consensus        84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--~l~~L~~L~l  161 (603)
                      ++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++ ++...+.  .+++|++|++
T Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~L  178 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLEL  178 (680)
T ss_dssp             SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEEC
T ss_pred             CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhhccccccccEEEC
Confidence            888888888887777778888888888888888887777778888888888888888874 3332333  4577888888


Q ss_pred             cCceeeeecCccccCCCC---------------------------CCceeeccceeeeccCCCCCCCcc--cccEEeccC
Q 036984          162 SNNHFQIPISLEPLSNLS---------------------------KLKAFNGEIYLETESHYNSLTPKF--QLTSISLSG  212 (603)
Q Consensus       162 ~~n~~~~~~~~~~l~~L~---------------------------~L~~l~~~~~~~~~~~~~~~~~~~--~L~~L~l~~  212 (603)
                      ++|.++...+ ..+..+.                           +|+.+++..+.........+....  +|+.|++++
T Consensus       179 ~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~  257 (680)
T 1ziw_A          179 SSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY  257 (680)
T ss_dssp             TTCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred             CCCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence            8887763322 2222222                           233333332111111112222222  377777777


Q ss_pred             CCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCc------------------------------cccccCCccEEEcc
Q 036984          213 YRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLM------------------------------PIHCLQKLATLDVS  262 (603)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~------------------------------~~~~l~~L~~L~Ls  262 (603)
                      |.+.+..+..+..+++|+.|++++|.+.+..|.++.                              .+..+++|++|+++
T Consensus       258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~  337 (680)
T 1ziw_A          258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME  337 (680)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred             CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence            777666666677777777777777766654443211                              24567788888888


Q ss_pred             CccccccCChhhhhcCCCCcEEecCCCCc--------------------ccccCCcCcccCCccccCCCCCCEEeccCCc
Q 036984          263 NNFFQGHIPVEIGTYLPGLMHLNLSRNAF--------------------NDLSYNRLQGSIPNWIDRLPQISYLLLANNY  322 (603)
Q Consensus       263 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l--------------------~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~  322 (603)
                      +|.+. .++...+..+++|++|++++|.+                    .+++.|.+.+..|..+..+++|++|++++|.
T Consensus       338 ~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  416 (680)
T 1ziw_A          338 DNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE  416 (680)
T ss_dssp             SCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc
Confidence            88888 45555566688999999988752                    3456777877778888889999999999999


Q ss_pred             CcccCC-ccccCCCCCCEEecCCCcCccCCChhhhcccccccc------cCCCCCC-CcCCCCCCeeEEecCC--CCCCc
Q 036984          323 IEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGY------YDAVAPT-WDHASAPALSYFSPNG--SPMGK  392 (603)
Q Consensus       323 l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~  392 (603)
                      +.+.++ ..+.++++|++|++++|++++..+..+...+.....      ....... ........+..+...+  .....
T Consensus       417 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~  496 (680)
T 1ziw_A          417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN  496 (680)
T ss_dssp             CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC
Confidence            876554 678888999999999998877666665544422211      0000001 1122334444444433  33344


Q ss_pred             chhhhhcccceEEECcCCCCcccCc--------hhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccC
Q 036984          393 EETVQILTSMSGIDLSCNKLTGEIP--------TQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI  464 (603)
Q Consensus       393 ~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  464 (603)
                      ...+..+++|+.|++++|.+++..+        ..+..+++|++|+|++|+++...+..|.++++|+.||+++|++++.+
T Consensus       497 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~  576 (680)
T 1ziw_A          497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP  576 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             hhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC
Confidence            4567889999999999999985422        23788899999999999999665567999999999999999999655


Q ss_pred             C-CccCCCCCCceecccCcccccCCCccc-ccCCCCcccccCCcCCCCCC
Q 036984          465 P-QLIVLTTLAVFRVAYNNLSGKIPDRVA-QFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       465 ~-~~~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~l~~~~l~gn~~~c~~~  512 (603)
                      + .+..+++|+.|++++|++++..|..+. .++.++.++++||||.|+|+
T Consensus       577 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             HhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            5 578899999999999999988887776 78999999999999999655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.6e-48  Score=435.43  Aligned_cols=471  Identities=21%  Similarity=0.177  Sum_probs=316.1

Q ss_pred             hHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCc-CCCCccCccc-CCCCCEEEccCCCCCcCCchh
Q 036984           23 FLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDND-LRDSLLGAWQ-TTSLQELNVASNKLTRNFPLG  100 (603)
Q Consensus        23 ~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~  100 (603)
                      +..+|. .++++++|||++|.++..  .+..|.++++|++|++++|. +..+++..|. +++|++|+|++|.+.+..|..
T Consensus        16 L~~vP~-lp~~l~~LdLs~N~i~~i--~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           16 LTQVPQ-VLNTTERLLLSFNYIRTV--TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             SSCCCS-SCTTCCEEEEESCCCCEE--CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCCC-CCCCcCEEECCCCcCCcc--ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            334444 578888888888888753  44678888888888888884 5566677777 888888888888888877888


Q ss_pred             hcCCCCCcEEeccCCCCccCcCcc--CCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCC
Q 036984          101 LCELVLLRELYIDNNDLSGSLPLC--LTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNL  178 (603)
Q Consensus       101 ~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L  178 (603)
                      |.++++|++|+|++|.+++..|..  |+++++|++|++++|.+++..+...+.++++|++|++++|.+....+ ..+..+
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~-~~l~~l  171 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE-HELEPL  171 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS-GGGHHH
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH-HHcccc
Confidence            888888888888888887655544  88888888888888888765444468888888888888888764322 233323


Q ss_pred             --CCCceeeccceeeeccCCCCCCCc------ccccEEeccCCCCCCCcChhhcc-------------------------
Q 036984          179 --SKLKAFNGEIYLETESHYNSLTPK------FQLTSISLSGYRDDGTFPKFLYH-------------------------  225 (603)
Q Consensus       179 --~~L~~l~~~~~~~~~~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~~~~-------------------------  225 (603)
                        ++|+.+++..+.........+...      ..|+.|++++|.+.+..+..+..                         
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~  251 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN  251 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence              444444444222211111111111      24777777777655444333221                         


Q ss_pred             -------------CCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcc
Q 036984          226 -------------QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN  292 (603)
Q Consensus       226 -------------l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  292 (603)
                                   .++|+.|++++|.+.+..+..   +..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.+.
T Consensus       252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~  327 (844)
T 3j0a_A          252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV---FETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLG  327 (844)
T ss_dssp             STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC---SSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCCS
T ss_pred             cCCCChhhhhccccCCccEEECCCCcccccChhh---hhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCCC
Confidence                         256888888888877666665   5667788888888888874 44444455778888877777664


Q ss_pred             cccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCC-hhhhcccccccccCCCCCC
Q 036984          293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIP-FCLVNTALSEGYYDAVAPT  371 (603)
Q Consensus       293 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~~~~~~~~~  371 (603)
                      .        ..|..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++... ..+..+.+........+..
T Consensus       328 ~--------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~  399 (844)
T 3j0a_A          328 E--------LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI  399 (844)
T ss_dssp             C--------CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC
T ss_pred             c--------cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccc
Confidence            3        335556667788888888888877777777778888888888887763211 0111111111111100000


Q ss_pred             --------------------CcCCCCCCeeEEecCCCCCC---cchhhhhcccceEEECcCCCCc-----ccCchhccCc
Q 036984          372 --------------------WDHASAPALSYFSPNGSPMG---KEETVQILTSMSGIDLSCNKLT-----GEIPTQIGYL  423 (603)
Q Consensus       372 --------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~l~~l  423 (603)
                                          ......+.+..+...++...   ....+..+++|+.|++++|.++     +..+..|..+
T Consensus       400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l  479 (844)
T 3j0a_A          400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL  479 (844)
T ss_dssp             CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred             ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence                                00012223333333222221   1122334667777777777775     3334567889


Q ss_pred             CcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCccccc
Q 036984          424 TRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYE  503 (603)
Q Consensus       424 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~  503 (603)
                      ++|++|+|++|++++..|..|.++++|+.|++++|++++.++.... ++|+.|++++|++++..|..+   ..++.++++
T Consensus       480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~  555 (844)
T 3j0a_A          480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF---VSLSVLDIT  555 (844)
T ss_dssp             CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC---SSCCEEEEE
T ss_pred             ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHh---CCcCEEEec
Confidence            9999999999999998889999999999999999999976663322 899999999999999998764   578889999


Q ss_pred             CCcCCCCCCC
Q 036984          504 GNPFLYGQPL  513 (603)
Q Consensus       504 gn~~~c~~~~  513 (603)
                      ||||.|+|+.
T Consensus       556 ~Np~~C~c~~  565 (844)
T 3j0a_A          556 HNKFICECEL  565 (844)
T ss_dssp             EECCCCSSSC
T ss_pred             CCCccccccc
Confidence            9999997654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-46  Score=409.90  Aligned_cols=454  Identities=18%  Similarity=0.175  Sum_probs=294.3

Q ss_pred             HHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcC
Q 036984           25 QIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCE  103 (603)
Q Consensus        25 ~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~  103 (603)
                      .+|...++++++|++++|.++..  .+..|.++++|++|++++|.++++++..|. +++|++|++++|.+.+..|..|++
T Consensus        25 ~ip~~~~~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  102 (606)
T 3vq2_A           25 KVPDDIPSSTKNIDLSFNPLKIL--KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG  102 (606)
T ss_dssp             SCCTTSCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred             cCCCCCCCCcCEEECCCCCcCEe--ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence            33444456777777777777642  334677777777777777777777777666 777777777777777766777777


Q ss_pred             CCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCc-cCCcccccCCCCCcEEEccCceeeeecC--ccccCCCCC
Q 036984          104 LVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE-SISSSPLMLLTSIEELILSNNHFQIPIS--LEPLSNLSK  180 (603)
Q Consensus       104 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~  180 (603)
                      +++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .+.++++|++|++++|.++...+  +..+.+++.
T Consensus       103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  181 (606)
T 3vq2_A          103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ  181 (606)
T ss_dssp             CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred             cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence            7777777777777776666677777777777777777764 3455 67777777777777777664221  112222221


Q ss_pred             -CceeeccceeeeccCCCCCCCcccccEEeccCCCCC-------------------------------------------
Q 036984          181 -LKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDD-------------------------------------------  216 (603)
Q Consensus       181 -L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------------------------------------------  216 (603)
                       +..++...+.........+ ...+|+.|++++|.+.                                           
T Consensus       182 ~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~  260 (606)
T 3vq2_A          182 VNLSLDMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD  260 (606)
T ss_dssp             CCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred             ccceeeccCCCcceeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence             1123332111111000111 1113444444333221                                           


Q ss_pred             ---------------CCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCC
Q 036984          217 ---------------GTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGL  281 (603)
Q Consensus       217 ---------------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L  281 (603)
                                     +..+. +..+++|+.|++++|.+. .+| +   +..+++|+.|++++|.+. .+|. +  .+++|
T Consensus       261 l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~---l~~~~~L~~L~l~~n~l~-~lp~-~--~l~~L  330 (606)
T 3vq2_A          261 VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-D---VPKHFKWQSLSIIRCQLK-QFPT-L--DLPFL  330 (606)
T ss_dssp             SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-C---CCTTCCCSEEEEESCCCS-SCCC-C--CCSSC
T ss_pred             ccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-h---ccccccCCEEEcccccCc-cccc-C--CCCcc
Confidence                           11111 334445555555555443 222 1   334445555555555552 4442 1  24444


Q ss_pred             cEEecCCCCc--------------ccccCCcCccc--CCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCC
Q 036984          282 MHLNLSRNAF--------------NDLSYNRLQGS--IPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN  345 (603)
Q Consensus       282 ~~L~L~~n~l--------------~~l~~~~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  345 (603)
                      +.|++++|..              +++++|.+.+.  .|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|
T Consensus       331 ~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n  409 (606)
T 3vq2_A          331 KSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHS  409 (606)
T ss_dssp             CEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTS
T ss_pred             ceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCC
Confidence            4444444411              23333444333  36677778888888888888774 4567788888888888888


Q ss_pred             cCccCCC-hhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCC--CCcchhhhhcccceEEECcCCCCcc-cCchhcc
Q 036984          346 NLSGHIP-FCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSP--MGKEETVQILTSMSGIDLSCNKLTG-EIPTQIG  421 (603)
Q Consensus       346 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~  421 (603)
                      ++.+..| ..+..++                   .+..+...+..  ......+..+++|++|++++|.+++ .+|..+.
T Consensus       410 ~l~~~~~~~~~~~l~-------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  470 (606)
T 3vq2_A          410 TLKRVTEFSAFLSLE-------------------KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA  470 (606)
T ss_dssp             EEESTTTTTTTTTCT-------------------TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             ccCCccChhhhhccc-------------------cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc
Confidence            8876555 3333322                   22333332221  1223456678999999999999997 4788899


Q ss_pred             CcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccC-CCCc
Q 036984          422 YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFS-TFEE  499 (603)
Q Consensus       422 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~l~~  499 (603)
                      .+++|++|++++|++++..|..|.++++|++|++++|++++.+| .+..+++|+.|++++|+++ .+|..+..++ .++.
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~  549 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF  549 (606)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred             cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence            99999999999999999999999999999999999999998878 7889999999999999999 6777788887 5999


Q ss_pred             ccccCCcCCCCCCC
Q 036984          500 DSYEGNPFLYGQPL  513 (603)
Q Consensus       500 ~~l~gn~~~c~~~~  513 (603)
                      +++++||+.|+++.
T Consensus       550 l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          550 FNLTNNSVACICEH  563 (606)
T ss_dssp             EECCSCCCCCSSTT
T ss_pred             EEccCCCcccCCcc
Confidence            99999999996654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-45  Score=396.26  Aligned_cols=440  Identities=19%  Similarity=0.214  Sum_probs=264.7

Q ss_pred             HhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCC
Q 036984           29 ELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLL  107 (603)
Q Consensus        29 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (603)
                      ..++++++|++++|.++..  .+..|.++++|++|++++|.++++++..|. +++|++|++++|.+++..|..|.++++|
T Consensus        25 ~l~~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (570)
T 2z63_A           25 NLPFSTKNLDLSFNPLRHL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (570)
T ss_dssp             SSCSSCCEEECCSCCCCEE--CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CccccccEEEccCCccCcc--ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence            3345566666666665532  234556666666666666666666655555 6666666666666666555566666666


Q ss_pred             cEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCc-cCCcccccCCCCCcEEEccCceeeeecCccccCCCCCC----c
Q 036984          108 RELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE-SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKL----K  182 (603)
Q Consensus       108 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L----~  182 (603)
                      ++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .+.++++|++|++++|.++... ...+..+++|    .
T Consensus       103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~~~~  180 (570)
T 2z63_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNL  180 (570)
T ss_dssp             CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCEEC-GGGGHHHHTCTTCCC
T ss_pred             ccccccccccccCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccceec-HHHccchhccchhhh
Confidence            666666666654444456666666666666666653 2344 5566666666666666554321 1122222222    2


Q ss_pred             eeeccceeeeccCCCCCCCcccccEEe-----------------------------------------------------
Q 036984          183 AFNGEIYLETESHYNSLTPKFQLTSIS-----------------------------------------------------  209 (603)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~~~~~L~~L~-----------------------------------------------------  209 (603)
                      .++...+.........+. ..+|+.++                                                     
T Consensus       181 ~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l  259 (570)
T 2z63_A          181 SLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI  259 (570)
T ss_dssp             EEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred             hcccCCCCceecCHHHhc-cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence            222221110000000010 01233333                                                     


Q ss_pred             ----ccCC-CCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEE
Q 036984          210 ----LSGY-RDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHL  284 (603)
Q Consensus       210 ----l~~~-~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L  284 (603)
                          +..+ .+.+..+..+..+++|+.|++++|.+. .+|.+   +..+ +|++|++++|.+. .+|..   .+++|+.|
T Consensus       260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~---~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L  330 (570)
T 2z63_A          260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF---SYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRL  330 (570)
T ss_dssp             EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC---CSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEE
T ss_pred             hhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh---hccC-CccEEeeccCccc-ccCcc---cccccCEE
Confidence                3322 233344555666667777777777665 34544   3334 6666666666665 55542   25566666


Q ss_pred             ecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccC--CccccCCCCCCEEecCCCcCccCCChhhhcccccc
Q 036984          285 NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEI--PAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSE  362 (603)
Q Consensus       285 ~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  362 (603)
                      ++++|.+...        .+.  ..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+..+. +..++   
T Consensus       331 ~l~~n~~~~~--------~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~---  396 (570)
T 2z63_A          331 TFTSNKGGNA--------FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE---  396 (570)
T ss_dssp             EEESCBSCCB--------CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCT---
T ss_pred             eCcCCccccc--------ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccC---
Confidence            6655543211        111  23455555555555554332  34445555555555555555432211 21111   


Q ss_pred             cccCCCCCCCcCCCCCCeeEEecCCCC---CCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccccccc-c
Q 036984          363 GYYDAVAPTWDHASAPALSYFSPNGSP---MGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT-G  438 (603)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~  438 (603)
                                      .+..+...+..   ......+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ +
T Consensus       397 ----------------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  460 (570)
T 2z63_A          397 ----------------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  460 (570)
T ss_dssp             ----------------TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             ----------------CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence                            11111111110   111134566889999999999999889999999999999999999998 5


Q ss_pred             cCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984          439 TIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       439 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~  512 (603)
                      .+|..+..+++|++|++++|++++..| .+..+++|++|++++|++++..|..+..++.++.+++++||+.|.+|
T Consensus       461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            789999999999999999999998877 88899999999999999999888889999999999999999999544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.1e-44  Score=393.02  Aligned_cols=487  Identities=21%  Similarity=0.172  Sum_probs=356.0

Q ss_pred             ceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEE
Q 036984            8 EHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQEL   86 (603)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L   86 (603)
                      +.++++++.+.      .+|...++++++|++++|.++..  .+..|.++++|++|++++|.++++++..|. +++|++|
T Consensus         7 ~~~~cs~~~L~------~ip~~~~~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   78 (680)
T 1ziw_A            7 EVADCSHLKLT------QVPDDLPTNITVLNLTHNQLRRL--PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL   78 (680)
T ss_dssp             SEEECCSSCCS------SCCSCSCTTCSEEECCSSCCCCC--CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEE
T ss_pred             CeeECCCCCcc------ccccccCCCCcEEECCCCCCCCc--CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEE
Confidence            45666665443      34444568999999999999863  446799999999999999999999999998 9999999


Q ss_pred             EccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCcee
Q 036984           87 NVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF  166 (603)
Q Consensus        87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~  166 (603)
                      ++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..+. .+..+++|++|++++|.+
T Consensus        79 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A           79 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCC
T ss_pred             ECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcc
Confidence            9999999987667899999999999999999988888999999999999999999865554 789999999999999988


Q ss_pred             eeecCcc-ccCCCCCCceeeccceeeecc---CCCCCC------------------------CcccccEEeccCCCCCCC
Q 036984          167 QIPISLE-PLSNLSKLKAFNGEIYLETES---HYNSLT------------------------PKFQLTSISLSGYRDDGT  218 (603)
Q Consensus       167 ~~~~~~~-~l~~L~~L~~l~~~~~~~~~~---~~~~~~------------------------~~~~L~~L~l~~~~~~~~  218 (603)
                      +...+.. ....+++|+.+++..+.....   .+....                        ...+|+.|++++|.+.+.
T Consensus       158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~  237 (680)
T 1ziw_A          158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT  237 (680)
T ss_dssp             CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred             cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence            7432211 122456677777663322111   111111                        125788999999999888


Q ss_pred             cChhhccCCC--CCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCc-----
Q 036984          219 FPKFLYHQHD--LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF-----  291 (603)
Q Consensus       219 ~~~~~~~l~~--L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-----  291 (603)
                      .+..+..++.  |+.|++++|.+.+..+.+   +..+++|++|++++|.+.+..|. .+..+++|+.|++++|..     
T Consensus       238 ~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~  313 (680)
T 1ziw_A          238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDS---FAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQSIS  313 (680)
T ss_dssp             CTTTTGGGGGSCCCEEECTTSCCCEECTTT---TTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBCCC---
T ss_pred             ChhHhhccCcCCCCEEECCCCCcCccCccc---ccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhhhcccc
Confidence            8888888765  999999999998877776   67789999999999999854443 344477777777765421     


Q ss_pred             --------------------ccccCCcCcccCCccccCCCCCCEEeccC----------------------------CcC
Q 036984          292 --------------------NDLSYNRLQGSIPNWIDRLPQISYLLLAN----------------------------NYI  323 (603)
Q Consensus       292 --------------------~~l~~~~~~~~~~~~l~~l~~L~~L~L~~----------------------------n~l  323 (603)
                                          +++++|.+.+..+..+..+++|++|++++                            |++
T Consensus       314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l  393 (680)
T 1ziw_A          314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI  393 (680)
T ss_dssp             ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred             cccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence                                23445555555555555555555555544                            445


Q ss_pred             cccCCccccCCCCCCEEecCCCcCccCCC-hhhhccccccccc---CCC--CCCCcCCCCCCeeEEecCCCCC----Ccc
Q 036984          324 EGEIPAQLCQLKEVRLIDLSHNNLSGHIP-FCLVNTALSEGYY---DAV--APTWDHASAPALSYFSPNGSPM----GKE  393 (603)
Q Consensus       324 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~  393 (603)
                      ++..+.++..+++|+.|++++|++++.+| ..+..+.......   ...  .........+.+..+...+...    ...
T Consensus       394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p  473 (680)
T 1ziw_A          394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP  473 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred             CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence            55556667777777777777777766555 3444333211110   000  0001112234444444443321    223


Q ss_pred             hhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCC--------cCCcCCCCCCEEeCCCCcCcccCC
Q 036984          394 ETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP--------ITFSNLKQIESLDLSYNLLHGKIP  465 (603)
Q Consensus       394 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~  465 (603)
                      ..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+        ..|.++++|++|++++|+++...+
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~  553 (680)
T 1ziw_A          474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV  553 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence            456778999999999999998888889999999999999999986532        237888999999999999994444


Q ss_pred             -CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcC
Q 036984          466 -QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF  507 (603)
Q Consensus       466 -~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~  507 (603)
                       .+..+++|+.|++++|++++..+..+..++.++.+++++|..
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence             588999999999999999977777778899999999999964

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.6e-44  Score=389.26  Aligned_cols=466  Identities=19%  Similarity=0.146  Sum_probs=344.4

Q ss_pred             CCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCC
Q 036984            5 KNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSL   83 (603)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L   83 (603)
                      +++++|++++|.+.....  .. ...+++|++|++++|.+..  ..+..|.++++|++|++++|.++.+.+..|. +++|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~--~~-~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQN--TT-FSRLINLTFLDLTRCQIYW--IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL  107 (606)
T ss_dssp             TTCCEEECTTCCCSEECT--TT-STTCTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred             CcCcEEEccCCccCcCCh--hH-hccCccceEEECCCCccce--eChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence            468999999988753311  11 1347899999999999875  3457799999999999999999998888887 9999


Q ss_pred             CEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCc--EEEc
Q 036984           84 QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIE--ELIL  161 (603)
Q Consensus        84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~--~L~l  161 (603)
                      ++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++ ++...+..+++|+  +|++
T Consensus       108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l  186 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNL  186 (606)
T ss_dssp             CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEEC
T ss_pred             cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeEEec
Confidence            999999999998777889999999999999999987555556669999999999999985 4444788899998  8999


Q ss_pred             cCceeeeecCccccCC--------------------CC-------------------------------CCceeecccee
Q 036984          162 SNNHFQIPISLEPLSN--------------------LS-------------------------------KLKAFNGEIYL  190 (603)
Q Consensus       162 ~~n~~~~~~~~~~l~~--------------------L~-------------------------------~L~~l~~~~~~  190 (603)
                      ++|.+....+. .+..                    +.                               +++.++...+.
T Consensus       187 ~~n~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~  265 (606)
T 3t6q_A          187 NGNDIAGIEPG-AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY  265 (606)
T ss_dssp             TTCCCCEECTT-TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred             CCCccCccChh-HhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence            99988753321 1111                    00                               22233333222


Q ss_pred             eeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccC
Q 036984          191 ETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHI  270 (603)
Q Consensus       191 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~  270 (603)
                      ........+...++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..|..   +..+++|++|++++|.+.+.+
T Consensus       266 l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~~~~~~  341 (606)
T 3t6q_A          266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS---ASNFPSLTHLSIKGNTKRLEL  341 (606)
T ss_dssp             CSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC---GGGCTTCSEEECCSCSSCCBC
T ss_pred             cCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh---hhccCcCCEEECCCCCccccc
Confidence            22223333566779999999999887 57778888999999999999988766655   677889999999999888778


Q ss_pred             ChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccC
Q 036984          271 PVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGH  350 (603)
Q Consensus       271 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  350 (603)
                      |...+..+++|++|++++|.+..+.      ..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|++++.
T Consensus       342 ~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  415 (606)
T 3t6q_A          342 GTGCLENLENLRELDLSHDDIETSD------CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK  415 (606)
T ss_dssp             CSSTTTTCTTCCEEECCSSCCCEEE------ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred             chhhhhccCcCCEEECCCCcccccc------CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence            7776667889999999888775432      1234455566666666666666666666666666666666666666554


Q ss_pred             CChh-hhcccccccc---cCCCC--CCCcCCCCCCeeEEecCCCCCCc-----chhhhhcccceEEECcCCCCcccCchh
Q 036984          351 IPFC-LVNTALSEGY---YDAVA--PTWDHASAPALSYFSPNGSPMGK-----EETVQILTSMSGIDLSCNKLTGEIPTQ  419 (603)
Q Consensus       351 ~~~~-~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~  419 (603)
                      .|.. +..++.....   .....  ........+.+..+...+.....     ...+..+++|+.|++++|.+++..|..
T Consensus       416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  495 (606)
T 3t6q_A          416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA  495 (606)
T ss_dssp             TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred             ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence            4322 3322211111   00000  00111234455566555543322     245778999999999999999888999


Q ss_pred             ccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCC
Q 036984          420 IGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIP  488 (603)
Q Consensus       420 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p  488 (603)
                      +..+++|++|+|++|++++..|..|.+++.| .|++++|++++.+| .+..+++|+.|++++|++.+..+
T Consensus       496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9999999999999999999999999999999 99999999998777 67889999999999999998766

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.8e-45  Score=410.88  Aligned_cols=479  Identities=20%  Similarity=0.187  Sum_probs=292.0

Q ss_pred             CCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCC
Q 036984            4 FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTS   82 (603)
Q Consensus         4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~   82 (603)
                      .++|++|+|++|.+.....  . ....+++|++|+|++|.... .+.+..|.++++|++|+|++|.+..+.+..|. +++
T Consensus        23 p~~l~~LdLs~N~i~~i~~--~-~~~~l~~L~~LdLs~n~~~~-~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTA--S-SFPFLEQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             CTTCCEEEEESCCCCEECS--S-SCSSCCSCSEEEECTTCCCC-EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred             CCCcCEEECCCCcCCccCh--h-HCcccccCeEEeCCCCCCcc-ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence            3678888888877653211  1 11237788888888885432 22356788888888888888888888777777 888


Q ss_pred             CCEEEccCCCCCcCCchh--hcCCCCCcEEeccCCCCccCcC-ccCCCCCCCCEEEcccCcCCccCCcccccCC--CCCc
Q 036984           83 LQELNVASNKLTRNFPLG--LCELVLLRELYIDNNDLSGSLP-LCLTNLTSLQVLDVSYNQLTESISSSPLMLL--TSIE  157 (603)
Q Consensus        83 L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l--~~L~  157 (603)
                      |++|++++|.+.+..|..  |.++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+. .+..+  ++|+
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~  177 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTLS  177 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHCSSC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-HcccccCCccc
Confidence            888888888887755544  7888888888888888876544 4678888888888888887754443 45444  5555


Q ss_pred             EEEccCceeeeecCccccCCC-----------------------------------------------------------
Q 036984          158 ELILSNNHFQIPISLEPLSNL-----------------------------------------------------------  178 (603)
Q Consensus       158 ~L~l~~n~~~~~~~~~~l~~L-----------------------------------------------------------  178 (603)
                      .|++++|.+....+. .+..+                                                           
T Consensus       178 ~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~  256 (844)
T 3j0a_A          178 FFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD  256 (844)
T ss_dssp             CCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred             eEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence            555555555432211 01111                                                           


Q ss_pred             ---------CCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCcc
Q 036984          179 ---------SKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMP  249 (603)
Q Consensus       179 ---------~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  249 (603)
                               .+|+.+++..+.........+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..   
T Consensus       257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---  333 (844)
T 3j0a_A          257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN---  333 (844)
T ss_dssp             GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS---
T ss_pred             hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH---
Confidence                     12222222211111111222333445555555555555444555555555555555555555444443   


Q ss_pred             ccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccc-----------cCCcCcccCCccccCCCCCCEEec
Q 036984          250 IHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDL-----------SYNRLQGSIPNWIDRLPQISYLLL  318 (603)
Q Consensus       250 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-----------~~~~~~~~~~~~l~~l~~L~~L~L  318 (603)
                      +..+++|+.|++++|.+. .++...+..+++|+.|++++|.+..+           ++|.+. .+|..   ..+++.|++
T Consensus       334 ~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~l  408 (844)
T 3j0a_A          334 FYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHL  408 (844)
T ss_dssp             CSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEEC
T ss_pred             hcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcc-ccccc---ccccceeec
Confidence            444555555555555554 34443444455555555555554322           223332 12221   234555555


Q ss_pred             cCCcCcccCC-ccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCC-----CCc
Q 036984          319 ANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSP-----MGK  392 (603)
Q Consensus       319 ~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  392 (603)
                      ++|.+++... ..+..+++|+.|++++|++++..+.....                .........+..+...     ...
T Consensus       409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------~~~~L~~L~Ls~N~l~~~~~~~~~  472 (844)
T 3j0a_A          409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS----------------ENPSLEQLFLGENMLQLAWETELC  472 (844)
T ss_dssp             CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC----------------SCTTCCBCEEESCCCSSSCCSCCC
T ss_pred             ccCccccCchhhhhhcCCccceeeCCCCcccccccccccc----------------cCCccccccCCCCccccccccccc
Confidence            5555554321 23458899999999999987543221100                0001111122222111     111


Q ss_pred             chhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCC
Q 036984          393 EETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTT  472 (603)
Q Consensus       393 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~  472 (603)
                      ...+..+++|+.|+|++|++++..+..+..+++|++|+|++|++++..+..+.  ++|+.||+++|++++.+|..  +++
T Consensus       473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~  548 (844)
T 3j0a_A          473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVS  548 (844)
T ss_dssp             SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSS
T ss_pred             hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCC
Confidence            23466789999999999999989898999999999999999999987777766  89999999999999888832  458


Q ss_pred             CCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCCCCCCCCCC
Q 036984          473 LAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNG  521 (603)
Q Consensus       473 L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~~~~C~~~~  521 (603)
                      |+.|++++|++.+..+-     ..+......++...|+.+....|..+.
T Consensus       549 L~~l~l~~Np~~C~c~~-----~~f~~~~~~~~~~~~~~~~~~~C~~p~  592 (844)
T 3j0a_A          549 LSVLDITHNKFICECEL-----STFINWLNHTNVTIAGPPADIYCVYPD  592 (844)
T ss_dssp             CCEEEEEEECCCCSSSC-----CSHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred             cCEEEecCCCccccccc-----HHHHHHHHhcCcccccccccCccCCch
Confidence            99999999999986652     222222224455566666667786543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.8e-43  Score=383.09  Aligned_cols=445  Identities=20%  Similarity=0.227  Sum_probs=296.3

Q ss_pred             CCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCC
Q 036984            5 KNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSL   83 (603)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L   83 (603)
                      ++|++|++++|.+.....  . ....+++|++|++++|.++.  +.+..|.++++|++|++++|.++++++..|. +++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~--~-~~~~l~~L~~L~Ls~n~l~~--i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  106 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKS--Y-SFSNFSELQWLDLSRCEIET--IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL  106 (606)
T ss_dssp             TTCCEEECTTSCCCEECT--T-TTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred             CCcCEEECCCCCcCEeCh--h-hccCCccCcEEeCCCCcccc--cCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence            568888888877643221  1 11237788888888888774  2345678888888888888888888777776 8888


Q ss_pred             CEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCcc-CcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCc----E
Q 036984           84 QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSG-SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIE----E  158 (603)
Q Consensus        84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~----~  158 (603)
                      ++|++++|.+.+..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+. .+..+.+|+    +
T Consensus       107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~~l~~  185 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLRENPQVNLS  185 (606)
T ss_dssp             CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT-TTHHHHHCTTCCCE
T ss_pred             CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh-hhhhhhccccccce
Confidence            888888888887666778888888888888888875 4577888888888888888888753333 455544443    5


Q ss_pred             EEccCceeeeecCccccCCCCCCceeeccceee-----------------------------------------------
Q 036984          159 LILSNNHFQIPISLEPLSNLSKLKAFNGEIYLE-----------------------------------------------  191 (603)
Q Consensus       159 L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~-----------------------------------------------  191 (603)
                      |++++|.++.... ..+... +|+.+++..+..                                               
T Consensus       186 L~l~~n~l~~~~~-~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l  263 (606)
T 3vq2_A          186 LDMSLNPIDFIQD-QAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI  263 (606)
T ss_dssp             EECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred             eeccCCCcceeCc-ccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence            6666666542221 111111 222222110000                                               


Q ss_pred             ----------eccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCC---------------
Q 036984          192 ----------TESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNW---------------  246 (603)
Q Consensus       192 ----------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~---------------  246 (603)
                                .......+....+|+.++++++.+.. ++ .+..+++|+.|++++|.+ +.+|.+               
T Consensus       264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~  340 (606)
T 3vq2_A          264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKG  340 (606)
T ss_dssp             EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSS
T ss_pred             hheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcC
Confidence                      00000112233345555555554432 22 444444445555544444 233321               


Q ss_pred             --CccccccCCccEEEccCcccccc--CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCc
Q 036984          247 --LMPIHCLQKLATLDVSNNFFQGH--IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNY  322 (603)
Q Consensus       247 --~~~~~~l~~L~~L~Ls~n~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~  322 (603)
                        ...+..+++|++|++++|.+++.  ++..+ ..+++|+.|++++|.+..         +|..+..+++|++|++++|.
T Consensus       341 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~---------~~~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSD-LGTNSLRHLDLSFNGAII---------MSANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             CEECCCCCCTTCCEEECCSSCEEEEEECCHHH-HCCSCCCEEECCSCSEEE---------ECCCCTTCTTCCEEECTTSE
T ss_pred             ccchhhccCCCCCEEECcCCccCCCcchhhhh-ccCCcccEeECCCCcccc---------chhhccCCCCCCeeECCCCc
Confidence              00134556666666666666532  13333 336677777776666543         34567778899999999999


Q ss_pred             CcccCC-ccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCC---cchhhhh
Q 036984          323 IEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMG---KEETVQI  398 (603)
Q Consensus       323 l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  398 (603)
                      +.+..+ ..+..+++|++|++++|++++..|..+..++                   .+..+...+....   ....+..
T Consensus       411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------~L~~L~l~~n~l~~~~~~~~~~~  471 (606)
T 3vq2_A          411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT-------------------SLNTLKMAGNSFKDNTLSNVFAN  471 (606)
T ss_dssp             EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT-------------------TCCEEECTTCEEGGGEECSCCTT
T ss_pred             cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC-------------------CCCEEECCCCcCCCcchHHhhcc
Confidence            887776 6788889999999999998877776655433                   2333333332211   2334667


Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCC-CCCcee
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLT-TLAVFR  477 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~-~L~~L~  477 (603)
                      +++|+.|++++|.+++..|..+..+++|++|+|++|++++..|..|.++++|++||+++|+++...+.+..++ +|++|+
T Consensus       472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~  551 (606)
T 3vq2_A          472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN  551 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEE
Confidence            8999999999999999889999999999999999999999889999999999999999999994444778887 699999


Q ss_pred             cccCcccccCCC
Q 036984          478 VAYNNLSGKIPD  489 (603)
Q Consensus       478 l~~N~l~~~~p~  489 (603)
                      +++|++.+..+.
T Consensus       552 l~~N~~~c~c~~  563 (606)
T 3vq2_A          552 LTNNSVACICEH  563 (606)
T ss_dssp             CCSCCCCCSSTT
T ss_pred             ccCCCcccCCcc
Confidence            999999987663

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9e-44  Score=382.34  Aligned_cols=429  Identities=20%  Similarity=0.203  Sum_probs=300.4

Q ss_pred             HHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcC
Q 036984           25 QIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCE  103 (603)
Q Consensus        25 ~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~  103 (603)
                      .+|...+++|++|++++|.++..  .+..|.++++|++|++++|.++++++..|. +++|++|++++|.+.+..+..|++
T Consensus        19 ~ip~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   96 (549)
T 2z81_A           19 SIPSGLTAAMKSLDLSFNKITYI--GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP   96 (549)
T ss_dssp             SCCSCCCTTCCEEECCSSCCCEE--CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred             cccccCCCCccEEECcCCccCcc--ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence            34444457888888888888753  345788888888888888888888887777 888888888888888877777888


Q ss_pred             CCCCcEEeccCCCCccC-cCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCc
Q 036984          104 LVLLRELYIDNNDLSGS-LPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLK  182 (603)
Q Consensus       104 l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  182 (603)
                      +++|++|++++|.+++. .|..++++++|++|++++|.+.+.++...+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus        97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~  175 (549)
T 2z81_A           97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-QSLKSIRDIH  175 (549)
T ss_dssp             CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEE
T ss_pred             CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-hhhhccccCc
Confidence            88888888888888753 456788888888888888875456665578888888888888888775433 3455566666


Q ss_pred             eeeccceeeeccCCCCCCCcccccEEeccCCCCCCCc-------------------------------ChhhccCCCCCE
Q 036984          183 AFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTF-------------------------------PKFLYHQHDLKN  231 (603)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------------------------~~~~~~l~~L~~  231 (603)
                      .++...+.........+....+|+.|++++|.+.+..                               +..+..+++|+.
T Consensus       176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~  255 (549)
T 2z81_A          176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE  255 (549)
T ss_dssp             EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred             eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence            5554422110000000112345666666666554421                               112233455566


Q ss_pred             EEcCCCcccCCCCC---CCcc-----------------------------ccccCCccEEEccCccccccCChhhhhcCC
Q 036984          232 ADLSHLNLSGEFPN---WLMP-----------------------------IHCLQKLATLDVSNNFFQGHIPVEIGTYLP  279 (603)
Q Consensus       232 L~L~~n~i~~~~~~---~~~~-----------------------------~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~  279 (603)
                      +++++|.+.+....   ....                             ....++|+.|++++|.+. .+|..++..++
T Consensus       256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~  334 (549)
T 2z81_A          256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK  334 (549)
T ss_dssp             EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred             cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence            66665554331100   0000                             112356777777777776 67777766677


Q ss_pred             CCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCC--ccccCCCCCCEEecCCCcCccCCChhhhc
Q 036984          280 GLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIP--AQLCQLKEVRLIDLSHNNLSGHIPFCLVN  357 (603)
Q Consensus       280 ~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  357 (603)
                      +|+.|++++|.+.+..-     ..+..++.+++|++|++++|.+++..+  ..+..+++|++|++++|+++ .+|.    
T Consensus       335 ~L~~L~Ls~N~l~~~~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~----  404 (549)
T 2z81_A          335 SLEFLDLSENLMVEEYL-----KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD----  404 (549)
T ss_dssp             TCCEEECCSSCCCHHHH-----HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS----
T ss_pred             cccEEEccCCccccccc-----cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCCh----
Confidence            88888777776643100     001234567788888888888875432  45777888888888888776 3332    


Q ss_pred             ccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccccccc
Q 036984          358 TALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT  437 (603)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  437 (603)
                                                           .+..+++|+.|++++|.++ .++..+.  ++|++|++++|+++
T Consensus       405 -------------------------------------~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~  444 (549)
T 2z81_A          405 -------------------------------------SCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD  444 (549)
T ss_dssp             -------------------------------------CCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCS
T ss_pred             -------------------------------------hhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChh
Confidence                                                 1234678999999999998 4444443  68999999999998


Q ss_pred             ccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984          438 GTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       438 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~  512 (603)
                      +..    ..+++|++|++++|+++ .+|....+++|++|++++|++++..|..+..++.++.+++++|||.|.++
T Consensus       445 ~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          445 SFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             hhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            643    57899999999999999 67766789999999999999999999889999999999999999999554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-42  Score=370.80  Aligned_cols=440  Identities=22%  Similarity=0.253  Sum_probs=328.5

Q ss_pred             CCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCC
Q 036984            5 KNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSL   83 (603)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L   83 (603)
                      ++++.|++++|.+.....  . ....+++|++|++++|+++.  +.+..|.++++|++|++++|.++.+++..|. +++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~--~-~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGS--Y-SFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (570)
T ss_dssp             SSCCEEECCSCCCCEECT--T-TTTTCSSCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             ccccEEEccCCccCccCh--h-HhhCCCCceEEECCCCcCCc--cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence            468999999988753321  1 11338899999999999875  3446789999999999999999999988888 9999


Q ss_pred             CEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccC-cCccCCCCCCCCEEEcccCcCCccCCcccccCCCCC----cE
Q 036984           84 QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGS-LPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSI----EE  158 (603)
Q Consensus        84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L----~~  158 (603)
                      ++|++++|.+.+..+..++++++|++|++++|.+++. +|..|+++++|++|++++|.+++ ++...+..+++|    ++
T Consensus       103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~  181 (570)
T 2z63_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLS  181 (570)
T ss_dssp             CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCE
T ss_pred             ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhh
Confidence            9999999999986666799999999999999999863 68899999999999999999985 444477777777    88


Q ss_pred             EEccCceeeeecCccccCCCCCCceeeccce-------------------------------------------------
Q 036984          159 LILSNNHFQIPISLEPLSNLSKLKAFNGEIY-------------------------------------------------  189 (603)
Q Consensus       159 L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~-------------------------------------------------  189 (603)
                      +++++|.+....+ ..+... +|+.+++..+                                                 
T Consensus       182 L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l  259 (570)
T 2z63_A          182 LDLSLNPMNFIQP-GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI  259 (570)
T ss_dssp             EECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred             cccCCCCceecCH-HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence            9999998764332 122221 2222221110                                                 


Q ss_pred             ---------eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEE
Q 036984          190 ---------LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLD  260 (603)
Q Consensus       190 ---------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~  260 (603)
                               .........+....+|+.+++++|.+. .+|..+..+ +|+.|++++|.+. .+|.     ..+++|+.|+
T Consensus       260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-----~~l~~L~~L~  331 (570)
T 2z63_A          260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-----LKLKSLKRLT  331 (570)
T ss_dssp             EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-----CBCSSCCEEE
T ss_pred             hhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-----ccccccCEEe
Confidence                     111122234555678999999999887 467777777 9999999999887 4543     3567888888


Q ss_pred             ccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEE
Q 036984          261 VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLI  340 (603)
Q Consensus       261 Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  340 (603)
                      +++|.+.+..+.   ..+++|+.|++++|.+....      ..+..+..+++|++|++++|.+.+..+. +..+++|+.|
T Consensus       332 l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~------~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L  401 (570)
T 2z63_A          332 FTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKG------CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHL  401 (570)
T ss_dssp             EESCBSCCBCCC---CBCTTCCEEECCSSCCBEEE------EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEE
T ss_pred             CcCCcccccccc---ccCCCCCEEeCcCCccCccc------cccccccccCccCEEECCCCcccccccc-ccccCCCCEE
Confidence            888887655443   34778888888887765332      2244566677777777777777754443 7777777777


Q ss_pred             ecCCCcCccCCC-hhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCC--CCcchhhhhcccceEEECcCCCCc-ccC
Q 036984          341 DLSHNNLSGHIP-FCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSP--MGKEETVQILTSMSGIDLSCNKLT-GEI  416 (603)
Q Consensus       341 ~Ls~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~-~~~  416 (603)
                      ++++|.+.+..| ..+..+                   ..+..+...+..  ......+..+++|+.|++++|.++ +.+
T Consensus       402 ~l~~n~l~~~~~~~~~~~l-------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  462 (570)
T 2z63_A          402 DFQHSNLKQMSEFSVFLSL-------------------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  462 (570)
T ss_dssp             ECTTSEEESCTTSCTTTTC-------------------TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             EccCCccccccchhhhhcC-------------------CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence            777777765443 122221                   222233222221  122345667899999999999997 568


Q ss_pred             chhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCC
Q 036984          417 PTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPD  489 (603)
Q Consensus       417 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~  489 (603)
                      |..+..+++|++|++++|++++..|..|.++++|++|++++|++++.+| .+..+++|+.|++++|++++.+|.
T Consensus       463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            8899999999999999999999889999999999999999999998777 688999999999999999998885

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.8e-42  Score=373.77  Aligned_cols=490  Identities=19%  Similarity=0.199  Sum_probs=308.4

Q ss_pred             cchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCch
Q 036984           21 TSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPL   99 (603)
Q Consensus        21 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~   99 (603)
                      .++.++|.+.++++++|||++|.|+.  +.+.+|.++++|++|+|++|+|+.+++++|. +++|++|+|++|++++..+.
T Consensus        41 ~~l~~vP~~lp~~~~~LdLs~N~i~~--l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~  118 (635)
T 4g8a_A           41 LNFYKIPDNLPFSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG  118 (635)
T ss_dssp             SCCSSCCSSSCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred             CCcCccCCCCCcCCCEEEeeCCCCCC--CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence            45667777777899999999999985  3456899999999999999999999999998 99999999999999998888


Q ss_pred             hhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecC--ccccCC
Q 036984          100 GLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPIS--LEPLSN  177 (603)
Q Consensus       100 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~l~~  177 (603)
                      .|.++++|++|++++|++++..+.+|+++++|++|++++|.+++......+..+++|++|++++|+++....  +..+.+
T Consensus       119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~  198 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  198 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred             HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence            999999999999999999988778899999999999999999753323378899999999999999874322  222222


Q ss_pred             CCCCc-eeeccc---eeeeccCC---------------------------------------------------CCCCCc
Q 036984          178 LSKLK-AFNGEI---YLETESHY---------------------------------------------------NSLTPK  202 (603)
Q Consensus       178 L~~L~-~l~~~~---~~~~~~~~---------------------------------------------------~~~~~~  202 (603)
                      ++.+. ..+...   .......+                                                   ..+...
T Consensus       199 l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~  278 (635)
T 4g8a_A          199 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL  278 (635)
T ss_dssp             CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred             hhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence            22111 111110   00000000                                                   000000


Q ss_pred             ccccEEeccCCCCCC---CcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhh-----
Q 036984          203 FQLTSISLSGYRDDG---TFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEI-----  274 (603)
Q Consensus       203 ~~L~~L~l~~~~~~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~-----  274 (603)
                      ..+....+..+....   .....+....+++.+++.++.+....+     +.....++.|++++|.+. .++...     
T Consensus       279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~-~~~~~~l~~L~  352 (635)
T 4g8a_A          279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKFG-QFPTLKLKSLK  352 (635)
T ss_dssp             GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-----GGSCCCCSEEEEESCEES-SCCCCBCTTCC
T ss_pred             cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-----cccchhhhhhhccccccc-CcCcccchhhh
Confidence            111111111111000   011112222333333333333221110     222334444444444433 121110     


Q ss_pred             --------------hhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEE
Q 036984          275 --------------GTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLI  340 (603)
Q Consensus       275 --------------~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  340 (603)
                                    ...+++|+.+++++|.+....      ..+.....+.+|+++++..|.... .+..+..+++|+.+
T Consensus       353 ~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~------~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l  425 (635)
T 4g8a_A          353 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG------CCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHL  425 (635)
T ss_dssp             EEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEE------ECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEE
T ss_pred             hcccccccCCCCcccccccccccchhhcccccccc------ccccchhhhhhhhhhhcccccccc-ccccccccccccch
Confidence                          112445555555555442211      222333334444444444444432 22234444455555


Q ss_pred             ecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCC--CCCCcchhhhhcccceEEECcCCCC-cccCc
Q 036984          341 DLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG--SPMGKEETVQILTSMSGIDLSCNKL-TGEIP  417 (603)
Q Consensus       341 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~  417 (603)
                      ++++|......+..                  .......+..+....  ........+..+++++.|++++|.+ .+..|
T Consensus       426 ~l~~~~~~~~~~~~------------------~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~  487 (635)
T 4g8a_A          426 DFQHSNLKQMSEFS------------------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP  487 (635)
T ss_dssp             ECTTSEEESTTSSC------------------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred             hhhhcccccccccc------------------ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc
Confidence            55444443222210                  011111112221111  1122334566788999999999975 44577


Q ss_pred             hhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCccccc-C
Q 036984          418 TQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQF-S  495 (603)
Q Consensus       418 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-~  495 (603)
                      ..+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..| .+..+++|++|++++|++++..|+.+..+ +
T Consensus       488 ~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  567 (635)
T 4g8a_A          488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS  567 (635)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCT
T ss_pred             hhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhC
Confidence            889999999999999999999999999999999999999999998777 78899999999999999999999999888 5


Q ss_pred             CCCcccccCCcCCCCCCCCC-------CCCCCCCCcccccccccccCCCCccccc
Q 036984          496 TFEEDSYEGNPFLYGQPLSK-------SCDDNGLTTVTTEAYTENEEGGSLIDMD  543 (603)
Q Consensus       496 ~l~~~~l~gn~~~c~~~~~~-------~C~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (603)
                      .++.+++++|||.|+|....       .=..........|+.|+..++....+.+
T Consensus       568 ~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~  622 (635)
T 4g8a_A          568 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN  622 (635)
T ss_dssp             TCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred             cCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeec
Confidence            79999999999999543210       0000112344568888888887776654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-42  Score=368.45  Aligned_cols=432  Identities=19%  Similarity=0.248  Sum_probs=318.3

Q ss_pred             ceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEE
Q 036984            8 EHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQEL   86 (603)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L   86 (603)
                      ++|+++++.+..      +|....++|++|++++|.+++.  .+..|.++++|++|++++|.++++.+..|. +++|++|
T Consensus         3 ~~l~ls~n~l~~------ip~~~~~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGLIH------VPKDLSQKTTILNISQNYISEL--WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTSCCSS------CCCSCCTTCSEEECCSSCCCCC--CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred             ceEecCCCCccc------ccccccccccEEECCCCccccc--ChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence            578888877653      2333447899999999998753  346788999999999999999998888887 8999999


Q ss_pred             EccCCCCCcCCchhhcCCCCCcEEeccCCCCcc-CcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCC--cEEEccC
Q 036984           87 NVASNKLTRNFPLGLCELVLLRELYIDNNDLSG-SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSI--EELILSN  163 (603)
Q Consensus        87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L--~~L~l~~  163 (603)
                      ++++|++++ +|..  .+++|++|++++|.+++ ..|..|+++++|++|++++|.+.+    ..+..+++|  ++|++++
T Consensus        75 ~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~  147 (520)
T 2z7x_B           75 DLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVL  147 (520)
T ss_dssp             ECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEE
T ss_pred             ecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeec
Confidence            999999986 5554  78999999999999986 367889999999999999998874    256777788  9999998


Q ss_pred             cee--eeecCccccCC--------------------------CCCCceeecccee------eeccCCCCCCCcccccEEe
Q 036984          164 NHF--QIPISLEPLSN--------------------------LSKLKAFNGEIYL------ETESHYNSLTPKFQLTSIS  209 (603)
Q Consensus       164 n~~--~~~~~~~~l~~--------------------------L~~L~~l~~~~~~------~~~~~~~~~~~~~~L~~L~  209 (603)
                      |.+  ....+ ..+..                          +++|+.++...+.      ........+....+|+.|+
T Consensus       148 n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~  226 (520)
T 2z7x_B          148 GETYGEKEDP-EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT  226 (520)
T ss_dssp             CTTTTSSCCT-TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred             cccccccccc-ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence            877  32211 22322                          3333333322110      0000111233344555566


Q ss_pred             ccCCCCCCCcChhhc---cCCCCCEEEcCCCcccCCCCCCCccc--cccCCccEEEccCccccccCC-hhhhhc--CCCC
Q 036984          210 LSGYRDDGTFPKFLY---HQHDLKNADLSHLNLSGEFPNWLMPI--HCLQKLATLDVSNNFFQGHIP-VEIGTY--LPGL  281 (603)
Q Consensus       210 l~~~~~~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~~~~~--~~l~~L~~L~Ls~n~~~~~~~-~~~~~~--l~~L  281 (603)
                      ++++.+.+..+..+.   ..++|+.|++++|.+.+.+|.++...  ..+++|+.+++++|.+  .+| ..++..  .++|
T Consensus       227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L  304 (520)
T 2z7x_B          227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNI  304 (520)
T ss_dssp             EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCC
T ss_pred             ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCce
Confidence            555554432211111   13578888888888887777763211  6678888888888887  466 233321  1568


Q ss_pred             cEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc--CCChhhhccc
Q 036984          282 MHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG--HIPFCLVNTA  359 (603)
Q Consensus       282 ~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~  359 (603)
                      +.|++++|.+....          ....+++|++|++++|.+++..|..+..+++|++|++++|++++  .+|       
T Consensus       305 ~~L~l~~n~l~~~~----------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~-------  367 (520)
T 2z7x_B          305 KNFTVSGTRMVHML----------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA-------  367 (520)
T ss_dssp             SEEEEESSCCCCCC----------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH-------
T ss_pred             eEEEcCCCcccccc----------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch-------
Confidence            88888888764332          11468899999999999998888899999999999999999974  222       


Q ss_pred             ccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCch-hccCcCcCCEEecccccccc
Q 036984          360 LSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPT-QIGYLTRIRALNLSHNNLTG  438 (603)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~  438 (603)
                                                        ..+..+++|+.|++++|.+++.+|. .+..+++|++|++++|++++
T Consensus       368 ----------------------------------~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~  413 (520)
T 2z7x_B          368 ----------------------------------EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD  413 (520)
T ss_dssp             ----------------------------------HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred             ----------------------------------HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence                                              2345578999999999999974554 48889999999999999998


Q ss_pred             cCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCc-ccccCCCCcccccCCcCCCCCC
Q 036984          439 TIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDR-VAQFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       439 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~l~~~~l~gn~~~c~~~  512 (603)
                      ..|..+.  ++|+.||+++|+++ .+| .+..+++|++|++++|+++ .+|.. +..++.++.+++++||+.|.++
T Consensus       414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            8887764  79999999999999 666 6779999999999999999 46654 8889999999999999999443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.2e-42  Score=374.49  Aligned_cols=421  Identities=17%  Similarity=0.197  Sum_probs=279.5

Q ss_pred             CCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCc---------------------------------cCcc
Q 036984           32 ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSL---------------------------------LGAW   78 (603)
Q Consensus        32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---------------------------------~~~~   78 (603)
                      ..++.|+|+++.+.+.  .+.+++++++|++|+|++|.+...+                                 +..+
T Consensus        81 ~~V~~L~L~~~~l~g~--lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~  158 (636)
T 4eco_A           81 GRVTGLSLEGFGASGR--VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF  158 (636)
T ss_dssp             CCEEEEECTTSCCEEE--ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred             CCEEEEEecCcccCCc--CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhH
Confidence            4788999999988753  4578899999999999988651100                                 0000


Q ss_pred             c--------------------CCCCCEEEc--cCCCCCcCCchhhcCCCCCcEEeccCCCCccC----------------
Q 036984           79 Q--------------------TTSLQELNV--ASNKLTRNFPLGLCELVLLRELYIDNNDLSGS----------------  120 (603)
Q Consensus        79 ~--------------------~~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~----------------  120 (603)
                      .                    ...++.+.+  .+|++++ +|..++++++|++|+|++|.+++.                
T Consensus       159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~  237 (636)
T 4eco_A          159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ  237 (636)
T ss_dssp             CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence            0                    111222222  2567777 777888888888888888888864                


Q ss_pred             -cCccCC--CCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCce-eee-ecCccccCC------CCCCceeeccce
Q 036984          121 -LPLCLT--NLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNH-FQI-PISLEPLSN------LSKLKAFNGEIY  189 (603)
Q Consensus       121 -~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~l~~------L~~L~~l~~~~~  189 (603)
                       +|..++  ++++|++|++++|.+.+.+|. .+.++++|++|++++|+ +++ ..+ ..+.+      +++|+.+++..+
T Consensus       238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp-~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLK-DDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             HTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHH-HHHHHHHHSGGGGTCCEEECCSS
T ss_pred             cCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccch-HHHHhhhccccCCCCCEEECCCC
Confidence             777877  888888888888888777776 78888888888888887 654 222 11222      244444444322


Q ss_pred             eeeccCCC--CCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCC-ccEEEccCccc
Q 036984          190 LETESHYN--SLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQK-LATLDVSNNFF  266 (603)
Q Consensus       190 ~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~-L~~L~Ls~n~~  266 (603)
                      ... ....  .+..+.+|+.|++++|.+.+.+| .+..+++|+.|++++|.+. .+|.+   +..+++ |++|++++|.+
T Consensus       316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~---l~~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPAN---FCGFTEQVENLSFAHNKL  389 (636)
T ss_dssp             CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTT---SEEECTTCCEEECCSSCC
T ss_pred             cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHh---hhhhcccCcEEEccCCcC
Confidence            211 1111  23344466666666666665555 5666666666666666665 45544   445555 66666666666


Q ss_pred             cccCChhhhh-cCCCCcEEecCCCCcccccCCcCcccCCcccc-------CCCCCCEEeccCCcCcccCCccccCCCCCC
Q 036984          267 QGHIPVEIGT-YLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID-------RLPQISYLLLANNYIEGEIPAQLCQLKEVR  338 (603)
Q Consensus       267 ~~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  338 (603)
                      + .+|..+.. .+++|+.|++++|.+.        +..|..+.       .+++|++|++++|.++...+..+..+++|+
T Consensus       390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~--------~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~  460 (636)
T 4eco_A          390 K-YIPNIFDAKSVSVMSAIDFSYNEIG--------SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS  460 (636)
T ss_dssp             S-SCCSCCCTTCSSCEEEEECCSSCTT--------TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred             c-ccchhhhhcccCccCEEECcCCcCC--------CcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence            5 55543322 1225666655555443        23344444       455677777777777644444455566777


Q ss_pred             EEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCch
Q 036984          339 LIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPT  418 (603)
Q Consensus       339 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  418 (603)
                      .|++++|+++ .+|.......                                 ...+..+++|+.|++++|.++ .+|.
T Consensus       461 ~L~Ls~N~l~-~i~~~~~~~~---------------------------------~~~~~~l~~L~~L~Ls~N~l~-~lp~  505 (636)
T 4eco_A          461 SINLMGNMLT-EIPKNSLKDE---------------------------------NENFKNTYLLTSIDLRFNKLT-KLSD  505 (636)
T ss_dssp             EEECCSSCCS-BCCSSSSEET---------------------------------TEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred             EEECCCCCCC-CcCHHHhccc---------------------------------cccccccCCccEEECcCCcCC-ccCh
Confidence            7777777665 4442211100                                 001233558999999999999 6777


Q ss_pred             hcc--CcCcCCEEecccccccccCCcCCcCCCCCCEEeC------CCCcCcccCC-CccCCCCCCceecccCcccccCCC
Q 036984          419 QIG--YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDL------SYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPD  489 (603)
Q Consensus       419 ~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~  489 (603)
                      .+.  .+++|++|+|++|++++ +|..+.++++|++|++      ++|++.+.+| .+..+++|++|++++|++ +.+|.
T Consensus       506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~  583 (636)
T 4eco_A          506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE  583 (636)
T ss_dssp             GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred             hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence            776  89999999999999996 8888999999999999      5677888888 888999999999999999 68888


Q ss_pred             cccccCCCCcccccCCcCCCCC
Q 036984          490 RVAQFSTFEEDSYEGNPFLYGQ  511 (603)
Q Consensus       490 ~~~~l~~l~~~~l~gn~~~c~~  511 (603)
                      .+.  +.++.+++++||+.|..
T Consensus       584 ~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          584 KIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CCC--TTCCEEECCSCTTCEEE
T ss_pred             hHh--CcCCEEECcCCCCcccc
Confidence            655  78999999999998843

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-41  Score=374.24  Aligned_cols=370  Identities=19%  Similarity=0.193  Sum_probs=274.8

Q ss_pred             CCCCCEEEccCCCCCc-----------------CCchhhc--CCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc
Q 036984           80 TTSLQELNVASNKLTR-----------------NFPLGLC--ELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ  140 (603)
Q Consensus        80 ~~~L~~L~Ls~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~  140 (603)
                      +++|++|+|++|.+++                 .+|..++  ++++|++|+|++|.+.+.+|..|+++++|++|++++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            7777777777777776                 2666655  77777777777777777777777777777777777776


Q ss_pred             -CCc-cCCccccc-------CCCCCcEEEccCceeeeecCc-cccCCCCCCceeeccceeeeccCCCCCCCcccccEEec
Q 036984          141 -LTE-SISSSPLM-------LLTSIEELILSNNHFQIPISL-EPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISL  210 (603)
Q Consensus       141 -i~~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  210 (603)
                       +++ .+|. .+.       .+++|++|++++|.+. ..+. ..+.++++|+.+++..+...  .++.+..+++|+.|++
T Consensus       527 ~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~L~L  602 (876)
T 4ecn_A          527 GISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKL  602 (876)
T ss_dssp             TSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESEEEC
T ss_pred             CcccccchH-HHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceEEEC
Confidence             665 4554 333       3347777777777776 3321 24666777777776633332  2225666779999999


Q ss_pred             cCCCCCCCcChhhccCCC-CCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhh---hh-cCCCCcEEe
Q 036984          211 SGYRDDGTFPKFLYHQHD-LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEI---GT-YLPGLMHLN  285 (603)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~---~~-~l~~L~~L~  285 (603)
                      ++|.+. .+|..+..+++ |+.|++++|.+. .+|.++. ....++|+.|++++|.+.+.+|...   .. .+++|+.|+
T Consensus       603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~  679 (876)
T 4ecn_A          603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT  679 (876)
T ss_dssp             CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred             cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence            999998 78888999998 999999999998 6776532 1223459999999999986555321   11 245899999


Q ss_pred             cCCCCcccccCCcCcccCCccc-cCCCCCCEEeccCCcCcccCCccccCC-------CCCCEEecCCCcCccCCChhhhc
Q 036984          286 LSRNAFNDLSYNRLQGSIPNWI-DRLPQISYLLLANNYIEGEIPAQLCQL-------KEVRLIDLSHNNLSGHIPFCLVN  357 (603)
Q Consensus       286 L~~n~l~~l~~~~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l-------~~L~~L~Ls~n~l~~~~~~~~~~  357 (603)
                      +++|.+..         +|..+ ..+++|+.|++++|.++.+.+..+...       ++|+.|+|++|+++ .+|..+..
T Consensus       680 Ls~N~L~~---------lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~  749 (876)
T 4ecn_A          680 LSYNEIQK---------FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA  749 (876)
T ss_dssp             CCSSCCCS---------CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST
T ss_pred             ccCCcCCc---------cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh
Confidence            99888763         34443 468999999999999984433333322       38999999999997 55543320


Q ss_pred             ccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccc----
Q 036984          358 TALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH----  433 (603)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~----  433 (603)
                                                             ..+++|+.|+|++|.+++ +|..+..+++|+.|+|++    
T Consensus       750 ---------------------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l  789 (876)
T 4ecn_A          750 ---------------------------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA  789 (876)
T ss_dssp             ---------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred             ---------------------------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence                                                   246799999999999996 788899999999999976    


Q ss_pred             --ccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984          434 --NNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY  509 (603)
Q Consensus       434 --N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c  509 (603)
                        |++.+.+|..|.++++|+.|++++|++ +.+| .+.  ++|+.|++++|++....+..+..........+.+|++.+
T Consensus       790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence              788889999999999999999999999 4777 543  699999999999988777766666666677788887665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.8e-41  Score=367.03  Aligned_cols=335  Identities=18%  Similarity=0.211  Sum_probs=223.7

Q ss_pred             Cchhhc--CCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc-CCc-cCCcccccCC------CCCcEEEccCcee
Q 036984           97 FPLGLC--ELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ-LTE-SISSSPLMLL------TSIEELILSNNHF  166 (603)
Q Consensus        97 ~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~~l------~~L~~L~l~~n~~  166 (603)
                      +|..++  ++++|++|++++|.+.+.+|..|+++++|++|++++|. +++ .+|. .+..+      ++|++|++++|.+
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcC
Confidence            444444  55555555555555554555555555555555555554 443 3443 33332      4555555555554


Q ss_pred             eeecCc-cccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCC-CCEEEcCCCcccCCCC
Q 036984          167 QIPISL-EPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHD-LKNADLSHLNLSGEFP  244 (603)
Q Consensus       167 ~~~~~~-~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~i~~~~~  244 (603)
                      + ..+. ..+.++++|+.+++..+...... +.+..+.+|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|
T Consensus       318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i-p~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp  393 (636)
T 4eco_A          318 K-TFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIP  393 (636)
T ss_dssp             S-SCCCHHHHTTCTTCCEEECCSCCCEEEC-CCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred             C-ccCchhhhccCCCCCEEeCcCCcCccch-hhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccc
Confidence            4 2111 13444444444444422211111 14445568888889888887 67778888888 999999999988 677


Q ss_pred             CCCccccccCCccEEEccCccccccCChhhhh------cCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEec
Q 036984          245 NWLMPIHCLQKLATLDVSNNFFQGHIPVEIGT------YLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLL  318 (603)
Q Consensus       245 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~------~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L  318 (603)
                      .++. ...+++|+.|++++|.+.+.+|..+..      .+++|+.|++++|.+..+.        +..+..+++|++|++
T Consensus       394 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp--------~~~~~~l~~L~~L~L  464 (636)
T 4eco_A          394 NIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP--------KELFSTGSPLSSINL  464 (636)
T ss_dssp             SCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC--------THHHHTTCCCSEEEC
T ss_pred             hhhh-hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCC--------HHHHccCCCCCEEEC
Confidence            6522 122448999999999988766655440      2668899888888776332        233455889999999


Q ss_pred             cCCcCcccCCccccCCC-------CCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCC
Q 036984          319 ANNYIEGEIPAQLCQLK-------EVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMG  391 (603)
Q Consensus       319 ~~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (603)
                      ++|.++.+.+..+....       +|+.|++++|+++ .+|..+..                                  
T Consensus       465 s~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------------------------  509 (636)
T 4eco_A          465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA----------------------------------  509 (636)
T ss_dssp             CSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST----------------------------------
T ss_pred             CCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh----------------------------------
Confidence            99999844444444333       8999999999987 55543320                                  


Q ss_pred             cchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEec------ccccccccCCcCCcCCCCCCEEeCCCCcCcccCC
Q 036984          392 KEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL------SHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP  465 (603)
Q Consensus       392 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  465 (603)
                           ..+++|+.|++++|++++ +|..+..+++|++|+|      ++|++.+.+|..+.++++|++|++++|+++ .+|
T Consensus       510 -----~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip  582 (636)
T 4eco_A          510 -----TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVN  582 (636)
T ss_dssp             -----TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCC
T ss_pred             -----ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccC
Confidence                 246789999999999996 7888889999999999      567788899999999999999999999995 677


Q ss_pred             -CccCCCCCCceecccCcccccCCC
Q 036984          466 -QLIVLTTLAVFRVAYNNLSGKIPD  489 (603)
Q Consensus       466 -~~~~l~~L~~L~l~~N~l~~~~p~  489 (603)
                       .+.  ++|+.|++++|++.+..+.
T Consensus       583 ~~~~--~~L~~L~Ls~N~l~~~~~~  605 (636)
T 4eco_A          583 EKIT--PNISVLDIKDNPNISIDLS  605 (636)
T ss_dssp             SCCC--TTCCEEECCSCTTCEEECT
T ss_pred             HhHh--CcCCEEECcCCCCccccHH
Confidence             443  8999999999988864443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.4e-39  Score=338.34  Aligned_cols=367  Identities=19%  Similarity=0.153  Sum_probs=244.5

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCC-CCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCc
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLR-DSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLR  108 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  108 (603)
                      +++|++|+|++|.++..  .+..|.++++|++|++++|.+. .+++..|. +++|++|++++|.+.+..|..|.++++|+
T Consensus        29 ~~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  106 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAEL--NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE  106 (455)
T ss_dssp             CTTCCEEECCSSCCCEE--CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred             CCccCEEEecCCccCcC--ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence            45666666666666532  2345666666666666666654 44455555 66666666666666665566666666666


Q ss_pred             EEeccCCCCccCcCcc--CCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeec
Q 036984          109 ELYIDNNDLSGSLPLC--LTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNG  186 (603)
Q Consensus       109 ~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~  186 (603)
                      +|++++|.+++..+..  |+++++|++|++++|.+++..|...+..+++|++|++++|.+.                   
T Consensus       107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-------------------  167 (455)
T 3v47_A          107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-------------------  167 (455)
T ss_dssp             EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS-------------------
T ss_pred             EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc-------------------
Confidence            6666666665433333  6666666666666666664444423566666666666666554                   


Q ss_pred             cceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccC--CCCCEEEcCCCcccCCCCCCCc-----cccccCCccEE
Q 036984          187 EIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQ--HDLKNADLSHLNLSGEFPNWLM-----PIHCLQKLATL  259 (603)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~-----~~~~l~~L~~L  259 (603)
                                                    +..+..+..+  .+|+.|++++|.+.+..+.++.     .+..+++|++|
T Consensus       168 ------------------------------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L  217 (455)
T 3v47_A          168 ------------------------------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL  217 (455)
T ss_dssp             ------------------------------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEE
T ss_pred             ------------------------------ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeE
Confidence                                          2333333332  3455666666655543333211     02245678888


Q ss_pred             EccCccccccCChhhhhc--CCCCcEEecCCCCcccc--cCCcCcccCCccccC--CCCCCEEeccCCcCcccCCccccC
Q 036984          260 DVSNNFFQGHIPVEIGTY--LPGLMHLNLSRNAFNDL--SYNRLQGSIPNWIDR--LPQISYLLLANNYIEGEIPAQLCQ  333 (603)
Q Consensus       260 ~Ls~n~~~~~~~~~~~~~--l~~L~~L~L~~n~l~~l--~~~~~~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~  333 (603)
                      ++++|.+.+..|..+...  .++|+.|++++|.....  ..+.+.+..+..+..  .++|++|++++|.+.+..+..+..
T Consensus       218 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  297 (455)
T 3v47_A          218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH  297 (455)
T ss_dssp             ECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred             ecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc
Confidence            888887776665554442  26778888877754321  222222222222222  368999999999999888888999


Q ss_pred             CCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCc
Q 036984          334 LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLT  413 (603)
Q Consensus       334 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  413 (603)
                      +++|+.|++++|++++..|..                                         +..+++|+.|++++|.++
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~-----------------------------------------~~~l~~L~~L~Ls~N~l~  336 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNA-----------------------------------------FWGLTHLLKLNLSQNFLG  336 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTT-----------------------------------------TTTCTTCCEEECCSSCCC
T ss_pred             CCCCCEEECCCCcccccChhH-----------------------------------------hcCcccCCEEECCCCccC
Confidence            999999999999987544433                                         334678999999999998


Q ss_pred             ccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCC
Q 036984          414 GEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPD  489 (603)
Q Consensus       414 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~  489 (603)
                      +..+..+..+++|++|+|++|++++..|..|.++++|++|++++|++++..+ .+..+++|++|++++|++++.+|.
T Consensus       337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            7878888899999999999999998888889999999999999999986555 567889999999999999988774

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.3e-39  Score=348.25  Aligned_cols=416  Identities=20%  Similarity=0.247  Sum_probs=295.2

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE  109 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (603)
                      +...+++++++|.++.   .|..+.  ++|++|++++|.++++++..|. +++|++|++++|++++..|..|.++++|++
T Consensus        30 ~~~~~~l~ls~~~L~~---ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           30 NELESMVDYSNRNLTH---VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             ---CCEEECTTSCCCS---CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             cCCCcEEEcCCCCCcc---CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            5566899999999985   333332  8999999999999999988888 999999999999999988999999999999


Q ss_pred             EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCC-cccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccc
Q 036984          110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESIS-SSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI  188 (603)
Q Consensus       110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~  188 (603)
                      |++++|.++ .+|..  .+++|++|++++|.+++ ++ ...+.++++|++|++++|.+.. ..+..+.++ +|+.+++..
T Consensus       105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~-l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L-~L~~L~L~~  178 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDV-LPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL-HLSCILLDL  178 (562)
T ss_dssp             EECTTSCCC-EECSC--CCTTCSEEECCSSCCSB-CCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS-CEEEEEEEE
T ss_pred             EECCCCcCC-ccCcc--ccccCCEEECCCCCccc-cCchHhhcccCcccEEecCCCcccc-Cchhhhhhc-eeeEEEeec
Confidence            999999998 45655  89999999999999985 33 2379999999999999999874 344445555 336666553


Q ss_pred             eee--eccCCCCC--------------------------CCcccccEEeccCCCCCC----CcChhhccCC---------
Q 036984          189 YLE--TESHYNSL--------------------------TPKFQLTSISLSGYRDDG----TFPKFLYHQH---------  227 (603)
Q Consensus       189 ~~~--~~~~~~~~--------------------------~~~~~L~~L~l~~~~~~~----~~~~~~~~l~---------  227 (603)
                      +..  .......+                          ....+|+.+++++|....    .....+..++         
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            211  11111111                          123355555555543100    0001112222         


Q ss_pred             ------------------CCCEEEcCCCcccCCCCCCCccc--cccCCccEEEccCccccccCChh-hhhc--CCCCcEE
Q 036984          228 ------------------DLKNADLSHLNLSGEFPNWLMPI--HCLQKLATLDVSNNFFQGHIPVE-IGTY--LPGLMHL  284 (603)
Q Consensus       228 ------------------~L~~L~L~~n~i~~~~~~~~~~~--~~l~~L~~L~Ls~n~~~~~~~~~-~~~~--l~~L~~L  284 (603)
                                        +|+.|++++|.+.+.+|.++...  ..++.|+.++++.+.+  .+|.. ++..  .++|+.|
T Consensus       259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L  336 (562)
T 3a79_B          259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML  336 (562)
T ss_dssp             EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred             CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence                              45555555555555555442111  2333344444444433  23321 1110  2457777


Q ss_pred             ecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccc
Q 036984          285 NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGY  364 (603)
Q Consensus       285 ~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  364 (603)
                      ++++|.+....          ..+.+++|++|++++|.+++..|..+..+++|+.|++++|++++..+            
T Consensus       337 ~l~~n~~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------  394 (562)
T 3a79_B          337 SISDTPFIHMV----------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK------------  394 (562)
T ss_dssp             EEESSCCCCCC----------CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH------------
T ss_pred             EccCCCccccc----------CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc------------
Confidence            77776654321          11467899999999999998888899999999999999999874110            


Q ss_pred             cCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCc-hhccCcCcCCEEecccccccccCCcC
Q 036984          365 YDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIP-TQIGYLTRIRALNLSHNNLTGTIPIT  443 (603)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~  443 (603)
                                                 ....+..+++|+.|++++|.+++.+| ..+..+++|++|++++|++++..|..
T Consensus       395 ---------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  447 (562)
T 3a79_B          395 ---------------------------VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC  447 (562)
T ss_dssp             ---------------------------HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred             ---------------------------chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence                                       11234557899999999999997454 45888999999999999999877776


Q ss_pred             CcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCc-ccccCCCCcccccCCcCCCCCC
Q 036984          444 FSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDR-VAQFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       444 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~l~~~~l~gn~~~c~~~  512 (603)
                      +.  ++|+.|++++|+++ .+| .+..+++|++|++++|+++ .+|.. +..++.++.+++++|||.|.|+
T Consensus       448 l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          448 LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            54  78999999999999 555 6779999999999999999 56655 8889999999999999999543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.2e-40  Score=363.41  Aligned_cols=422  Identities=17%  Similarity=0.172  Sum_probs=307.2

Q ss_pred             CCCcEEEccCCcCCCCCCCccccCCCCCCCEEEc-cCCcCCCCccCc---------------------------------
Q 036984           32 ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYI-RDNDLRDSLLGA---------------------------------   77 (603)
Q Consensus        32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~---------------------------------   77 (603)
                      ..++.|+|+++.+.+.  .+..++++++|++|+| ++|.+.+..+-.                                 
T Consensus       323 ~~V~~L~Ls~~~L~G~--ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~  400 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGR--VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL  400 (876)
T ss_dssp             SCEEEEECTTTCCEEE--ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred             CCEEEEECccCCCCCc--CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence            5799999999999864  4578999999999999 788654331100                                 


Q ss_pred             -----------------c--cCCCCCEEEcc--CCCCCcCCchhhcCCCCCcEEeccCCCCcc-----------------
Q 036984           78 -----------------W--QTTSLQELNVA--SNKLTRNFPLGLCELVLLRELYIDNNDLSG-----------------  119 (603)
Q Consensus        78 -----------------~--~~~~L~~L~Ls--~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-----------------  119 (603)
                                       .  ....++.+.+.  +|.+++ +|..|+++++|++|+|++|.+++                 
T Consensus       401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g  479 (876)
T 4ecn_A          401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ  479 (876)
T ss_dssp             CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             hHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence                             0  01223333443  378888 78899999999999999999997                 


Q ss_pred             CcCccCC--CCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCce-eee-ecC--cc----ccCCCCCCceeeccce
Q 036984          120 SLPLCLT--NLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNH-FQI-PIS--LE----PLSNLSKLKAFNGEIY  189 (603)
Q Consensus       120 ~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~--~~----~l~~L~~L~~l~~~~~  189 (603)
                      .+|..++  ++++|++|+|++|.+.+.+|. .+..+++|++|++++|+ +++ ..+  +.    .+..+++|+.+++..+
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            3888888  999999999999999888887 89999999999999998 765 222  11    3344556666666633


Q ss_pred             eeeccCCC--CCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCC-ccEEEccCccc
Q 036984          190 LETESHYN--SLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQK-LATLDVSNNFF  266 (603)
Q Consensus       190 ~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~-L~~L~Ls~n~~  266 (603)
                      ... ....  .+..+.+|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|.+   +..+++ |+.|++++|.+
T Consensus       559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~---l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPED---FCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTT---SCEECTTCCEEECCSSCC
T ss_pred             cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHH---HhhccccCCEEECcCCCC
Confidence            332 2222  3555667777777777776 555 6777777777777777777 66655   556666 77777777777


Q ss_pred             cccCChhhhhcC--CCCcEEecCCCCcccccCCcCcccCCcccc--CCCCCCEEeccCCcCcccCCccccCCCCCCEEec
Q 036984          267 QGHIPVEIGTYL--PGLMHLNLSRNAFNDLSYNRLQGSIPNWID--RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDL  342 (603)
Q Consensus       267 ~~~~~~~~~~~l--~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  342 (603)
                      . .+|..+.. +  ++|+.|++++|.+....     ..++..+.  .+++|+.|++++|.++...+..+..+++|+.|++
T Consensus       632 ~-~lp~~~~~-~~~~~L~~L~Ls~N~l~g~i-----p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L  704 (876)
T 4ecn_A          632 K-YIPNIFNA-KSVYVMGSVDFSYNKIGSEG-----RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL  704 (876)
T ss_dssp             C-SCCSCCCT-TCSSCEEEEECCSSCTTTTS-----SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred             C-cCchhhhc-cccCCCCEEECcCCcCCCcc-----ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence            6 66654332 3  23777777777654311     01112222  2347888888888887443344457788888888


Q ss_pred             CCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhcc-
Q 036984          343 SHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIG-  421 (603)
Q Consensus       343 s~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-  421 (603)
                      ++|+++ .+|..+....                                 ...+..+++|+.|+|++|+++ .+|..+. 
T Consensus       705 s~N~L~-~ip~~~~~~~---------------------------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~  749 (876)
T 4ecn_A          705 SNNLMT-SIPENSLKPK---------------------------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRA  749 (876)
T ss_dssp             CSCCCS-CCCTTSSSCT---------------------------------TSCCTTGGGCCEEECCSSCCC-CCCGGGST
T ss_pred             CCCcCC-ccChHHhccc---------------------------------cccccccCCccEEECCCCCCc-cchHHhhh
Confidence            888776 4443222100                                 011234569999999999999 7788887 


Q ss_pred             -CcCcCCEEecccccccccCCcCCcCCCCCCEEeCCC------CcCcccCC-CccCCCCCCceecccCcccccCCCcccc
Q 036984          422 -YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY------NLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQ  493 (603)
Q Consensus       422 -~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~  493 (603)
                       .+++|+.|+|++|++++ +|..+.++++|+.|++++      |.+.+.+| .+..+++|+.|++++|++ +.+|..+. 
T Consensus       750 ~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-  826 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-  826 (876)
T ss_dssp             TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred             ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-
Confidence             89999999999999996 788899999999999977      77888888 888999999999999999 68898754 


Q ss_pred             cCCCCcccccCCcCCCC
Q 036984          494 FSTFEEDSYEGNPFLYG  510 (603)
Q Consensus       494 l~~l~~~~l~gn~~~c~  510 (603)
                       +.++.+++++|++...
T Consensus       827 -~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          827 -PQLYILDIADNPNISI  842 (876)
T ss_dssp             -SSSCEEECCSCTTCEE
T ss_pred             -CCCCEEECCCCCCCcc
Confidence             6899999999998663

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-40  Score=353.79  Aligned_cols=403  Identities=16%  Similarity=0.154  Sum_probs=282.5

Q ss_pred             cEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEecc
Q 036984           35 RLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYID  113 (603)
Q Consensus        35 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (603)
                      ++||+++|.++.   .+..+.  ++|++|++++|.++++++..|. +++|++|++++|++++..|..|.++++|++|+++
T Consensus         3 ~~l~ls~n~l~~---ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLIH---VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCSS---CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred             ceEecCCCCccc---cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence            589999999985   334444  8999999999999999988887 9999999999999999889999999999999999


Q ss_pred             CCCCccCcCccCCCCCCCCEEEcccCcCCc-cCCcccccCCCCCcEEEccCceeeeecCccccCCCCCC--ceeecccee
Q 036984          114 NNDLSGSLPLCLTNLTSLQVLDVSYNQLTE-SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKL--KAFNGEIYL  190 (603)
Q Consensus       114 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L--~~l~~~~~~  190 (603)
                      +|+++. +|..  .+++|++|++++|.+++ .+|. .+..+++|++|++++|.+.. .   .+..+++|  +.+++..+.
T Consensus        78 ~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           78 HNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK-S---SVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             SSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG-G---GGGGGTTSCEEEEEEEECT
T ss_pred             CCceee-cCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch-h---hccccccceeeEEEeeccc
Confidence            999994 5555  89999999999999986 3455 89999999999999999874 2   34444555  666555322


Q ss_pred             e--eccCCCCCCCcc-cccEEeccCCCCCCCcC-hhhccCCCCCEEEcCCCc-------ccCCCCCCCccccccC-----
Q 036984          191 E--TESHYNSLTPKF-QLTSISLSGYRDDGTFP-KFLYHQHDLKNADLSHLN-------LSGEFPNWLMPIHCLQ-----  254 (603)
Q Consensus       191 ~--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~~~~l~-----  254 (603)
                      .  .......+..+. ....+++++|.+.+..+ ..+..+++|+.+++++|.       +.+.++.    +..++     
T Consensus       150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~----l~~l~~L~~L  225 (520)
T 2z7x_B          150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK----LQTNPKLSNL  225 (520)
T ss_dssp             TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHG----GGGCTTCCEE
T ss_pred             ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhh----hccccchhhc
Confidence            1  111111222111 22344555555443322 233445555555555543       2222221    33334     


Q ss_pred             ----------------------CccEEEccCccccccCChhhh----hcCCCCcEEecCCCCcccccCCcCcccCCcccc
Q 036984          255 ----------------------KLATLDVSNNFFQGHIPVEIG----TYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID  308 (603)
Q Consensus       255 ----------------------~L~~L~Ls~n~~~~~~~~~~~----~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~  308 (603)
                                            +|++|++++|.+.+.+|..++    ..+++|+.+++++|.+ .++.        .++.
T Consensus       226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~--------~~~~  296 (520)
T 2z7x_B          226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQ--------SYIY  296 (520)
T ss_dssp             EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCT--------HHHH
T ss_pred             cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecch--------hhhh
Confidence                                  555555555555555554442    2244555555544443 1110        1222


Q ss_pred             CC---CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEec
Q 036984          309 RL---PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSP  385 (603)
Q Consensus       309 ~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (603)
                      .+   .+|+.|++++|.+....  .+..+++|++|++++|++++.+|..                               
T Consensus       297 ~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~-------------------------------  343 (520)
T 2z7x_B          297 EIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFEN-------------------------------  343 (520)
T ss_dssp             HHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT-------------------------------
T ss_pred             cccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhh-------------------------------
Confidence            11   45677777776665332  1256677777777777776544432                               


Q ss_pred             CCCCCCcchhhhhcccceEEECcCCCCcc--cCchhccCcCcCCEEecccccccccCCc-CCcCCCCCCEEeCCCCcCcc
Q 036984          386 NGSPMGKEETVQILTSMSGIDLSCNKLTG--EIPTQIGYLTRIRALNLSHNNLTGTIPI-TFSNLKQIESLDLSYNLLHG  462 (603)
Q Consensus       386 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~  462 (603)
                                +..+++|++|++++|++++  ..|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++
T Consensus       344 ----------~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~  413 (520)
T 2z7x_B          344 ----------CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD  413 (520)
T ss_dssp             ----------CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred             ----------hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence                      3447899999999999996  4567799999999999999999974554 58889999999999999987


Q ss_pred             cCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984          463 KIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY  509 (603)
Q Consensus       463 ~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c  509 (603)
                      ..| .+.  ++|+.|++++|+++ .+|..+..++.++.+++++|.+..
T Consensus       414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~  458 (520)
T 2z7x_B          414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS  458 (520)
T ss_dssp             GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc
Confidence            777 432  79999999999999 788888899999999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-38  Score=342.39  Aligned_cols=447  Identities=17%  Similarity=0.184  Sum_probs=325.4

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE  109 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (603)
                      |+.....|.+++.++.   .|..+  .++|++|++++|.++++++..|. +++|++|++++|++.+..|..|.++++|++
T Consensus         4 C~~~~~c~~~~~~l~~---ip~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   78 (549)
T 2z81_A            4 CDASGVCDGRSRSFTS---IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH   78 (549)
T ss_dssp             ECTTSEEECTTSCCSS---CCSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCceEECCCCcccc---ccccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence            4555667888888875   33333  37999999999999999888888 999999999999999988899999999999


Q ss_pred             EeccCCCCccCcCccCCCCCCCCEEEcccCcCCcc-CCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccc
Q 036984          110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTES-ISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI  188 (603)
Q Consensus       110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~  188 (603)
                      |++++|.+++..+.+|+++++|++|++++|.+++. .+. .+..+++|++|++++|.+....+...+.++++|+.+++..
T Consensus        79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            99999999988777899999999999999999852 344 7899999999999999855455556788888888888874


Q ss_pred             eeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccc
Q 036984          189 YLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQG  268 (603)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~  268 (603)
                      +.........+....+|+.|+++.+.........+..+++|+.|++++|.+.+...........+++|+.|++++|.+.+
T Consensus       158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  237 (549)
T 2z81_A          158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD  237 (549)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred             CcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence            44333344556667799999999998764433444678999999999999986421111113456788888888888765


Q ss_pred             cCChhh---hhcCCCCcEEecCCCCcccccCC----------------------cCc-----ccCCccccCCCCCCEEec
Q 036984          269 HIPVEI---GTYLPGLMHLNLSRNAFNDLSYN----------------------RLQ-----GSIPNWIDRLPQISYLLL  318 (603)
Q Consensus       269 ~~~~~~---~~~l~~L~~L~L~~n~l~~l~~~----------------------~~~-----~~~~~~l~~l~~L~~L~L  318 (603)
                      ..+..+   ...+++|+.+++++|.+..+..-                      .+.     ..++..+...++|++|++
T Consensus       238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l  317 (549)
T 2z81_A          238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV  317 (549)
T ss_dssp             HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred             hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence            433322   23356777777777765433210                      000     011111223467888888


Q ss_pred             cCCcCcccCCccc-cCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcc----
Q 036984          319 ANNYIEGEIPAQL-CQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKE----  393 (603)
Q Consensus       319 ~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  393 (603)
                      ++|.+. .+|..+ ..+++|++|++++|++++.+|.....                ....+.+..+...+......    
T Consensus       318 ~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------~~~l~~L~~L~Ls~N~l~~~~~~~  380 (549)
T 2z81_A          318 ENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC----------------KGAWPSLQTLVLSQNHLRSMQKTG  380 (549)
T ss_dssp             ESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC----------------TTSSTTCCEEECTTSCCCCHHHHH
T ss_pred             ccCccc-cCCHHHHhcCccccEEEccCCccccccccchhh----------------hhccccCcEEEccCCcccccccch
Confidence            888887 445444 56888888888888887655432110                00112333333333322221    


Q ss_pred             hhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCC
Q 036984          394 ETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTL  473 (603)
Q Consensus       394 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L  473 (603)
                      ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+.  ++|++||+++|++++.+   ..+++|
T Consensus       381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~---~~l~~L  453 (549)
T 2z81_A          381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS---LFLPRL  453 (549)
T ss_dssp             HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC---CCCTTC
T ss_pred             hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc---ccCChh
Confidence            34677889999999999998 67778888899999999999988 4444432  68999999999998653   468899


Q ss_pred             CceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984          474 AVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY  509 (603)
Q Consensus       474 ~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c  509 (603)
                      ++|++++|+++ .+|. ...++.++.+++++|....
T Consensus       454 ~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~  487 (549)
T 2z81_A          454 QELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS  487 (549)
T ss_dssp             CEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred             cEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence            99999999998 6776 4678899999999997654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.3e-39  Score=336.28  Aligned_cols=355  Identities=21%  Similarity=0.204  Sum_probs=251.8

Q ss_pred             CCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCc-CCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEE
Q 036984           58 VHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTR-NFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLD  135 (603)
Q Consensus        58 ~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  135 (603)
                      ++|++|++++|.++++.+..|. +++|++|++++|.+.+ +.+..|.++++|++|++++|.+++..|.+|+++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            4555555555555555555444 5555555555555542 2234455555555555555555544455555555555555


Q ss_pred             cccCcCCccCCc-ccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCC
Q 036984          136 VSYNQLTESISS-SPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYR  214 (603)
Q Consensus       136 L~~n~i~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  214 (603)
                      +++|.+++..+. ..+..+++|++|++++                                                 |.
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~-------------------------------------------------n~  140 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRD-------------------------------------------------NN  140 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCS-------------------------------------------------SB
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCC-------------------------------------------------Cc
Confidence            555555432221 1244444444444444                                                 44


Q ss_pred             CCCCcChh-hccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhh--------hcCCCCcEEe
Q 036984          215 DDGTFPKF-LYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIG--------TYLPGLMHLN  285 (603)
Q Consensus       215 ~~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~--------~~l~~L~~L~  285 (603)
                      +.+..|.. +..+++|+.|++++|.+.+..+..+..+. ..+|+.|++++|.+. .++....        ..+++|+.|+
T Consensus       141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~L~  218 (455)
T 3v47_A          141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ-GKHFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLD  218 (455)
T ss_dssp             CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT-TCEEEEEECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEEEE
T ss_pred             cCccCcccccCCCCcccEEeCCCCcccccChhhhhccc-cccccccccccCccc-ccchhhccccccccccccceeeeEe
Confidence            44444544 78889999999999999988887643221 268999999999998 4443221        1257899999


Q ss_pred             cCCCCcccccCCcCcccCCccccC---CCCCCEEeccCCcCcccC----------Ccccc--CCCCCCEEecCCCcCccC
Q 036984          286 LSRNAFNDLSYNRLQGSIPNWIDR---LPQISYLLLANNYIEGEI----------PAQLC--QLKEVRLIDLSHNNLSGH  350 (603)
Q Consensus       286 L~~n~l~~l~~~~~~~~~~~~l~~---l~~L~~L~L~~n~l~~~~----------~~~~~--~l~~L~~L~Ls~n~l~~~  350 (603)
                      +++|.+..        ..|..+..   .++|+.|++++|...+..          +..+.  ..++|+.|++++|.+++.
T Consensus       219 Ls~n~l~~--------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  290 (455)
T 3v47_A          219 LSGNGFKE--------SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL  290 (455)
T ss_dssp             CTTSCCCH--------HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred             cCCCcccc--------cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence            88887653        23333322   378999999988654321          11222  236899999999999865


Q ss_pred             CChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEe
Q 036984          351 IPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALN  430 (603)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  430 (603)
                      .|..                                         +..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus       291 ~~~~-----------------------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  329 (455)
T 3v47_A          291 LKSV-----------------------------------------FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN  329 (455)
T ss_dssp             CTTT-----------------------------------------TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             chhh-----------------------------------------cccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence            5533                                         34477999999999999988899999999999999


Q ss_pred             cccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984          431 LSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY  509 (603)
Q Consensus       431 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c  509 (603)
                      |++|.+++..|..|.++++|++|++++|++++..| .+..+++|++|++++|++++..+..+..++.++.+++++||+.|
T Consensus       330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            99999998889999999999999999999998877 88999999999999999998777777899999999999999999


Q ss_pred             CCC
Q 036984          510 GQP  512 (603)
Q Consensus       510 ~~~  512 (603)
                      .+|
T Consensus       410 ~~~  412 (455)
T 3v47_A          410 SCP  412 (455)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.3e-37  Score=334.63  Aligned_cols=413  Identities=19%  Similarity=0.209  Sum_probs=312.6

Q ss_pred             CCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCC
Q 036984            4 FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTS   82 (603)
Q Consensus         4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~   82 (603)
                      +...++++++++.+..      +|...+++|++|++++|.++..  .+..|.++++|++|++++|.++++++..|. +++
T Consensus        30 ~~~~~~l~ls~~~L~~------ip~~~~~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           30 NELESMVDYSNRNLTH------VPKDLPPRTKALSLSQNSISEL--RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD  101 (562)
T ss_dssp             ---CCEEECTTSCCCS------CCTTSCTTCCEEECCSSCCCCC--CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             cCCCcEEEcCCCCCcc------CCCCCCCCcCEEECCCCCcccc--ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence            3445789999976653      3444568999999999999863  446899999999999999999999999888 999


Q ss_pred             CCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccC-cCccCCCCCCCCEEEcccCcCCccCCcccccCCCCC--cEE
Q 036984           83 LQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGS-LPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSI--EEL  159 (603)
Q Consensus        83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L--~~L  159 (603)
                      |++|++++|+++. +|..  .+++|++|++++|.+++. .|..|+++++|++|++++|.+.+.    .+..+++|  ++|
T Consensus       102 L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L  174 (562)
T 3a79_B          102 LEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCI  174 (562)
T ss_dssp             CCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEE
T ss_pred             CCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEE
Confidence            9999999999997 5554  899999999999999864 468899999999999999999752    35566666  999


Q ss_pred             EccCcee--eeecCcccc--------------------------CCCCCCceeecccee---------------------
Q 036984          160 ILSNNHF--QIPISLEPL--------------------------SNLSKLKAFNGEIYL---------------------  190 (603)
Q Consensus       160 ~l~~n~~--~~~~~~~~l--------------------------~~L~~L~~l~~~~~~---------------------  190 (603)
                      ++++|.+  ....+ ..+                          .++++|+.++...+.                     
T Consensus       175 ~L~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~  253 (562)
T 3a79_B          175 LLDLVSYHIKGGET-ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN  253 (562)
T ss_dssp             EEEESSCCCCSSSC-CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred             EeecccccccccCc-ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence            9999987  32111 111                          123333333332110                     


Q ss_pred             -------eeccC---CCCCCCcccccEEeccCCCCCCCcChhh-----ccCCCCCEEEcCCCcccCCCC-CCCccccccC
Q 036984          191 -------ETESH---YNSLTPKFQLTSISLSGYRDDGTFPKFL-----YHQHDLKNADLSHLNLSGEFP-NWLMPIHCLQ  254 (603)
Q Consensus       191 -------~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~-~~~~~~~~l~  254 (603)
                             .....   ........+|++|++++|.+.+.+|..+     ..++.|+.++++.+.+  .+| .++..+....
T Consensus       254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~  331 (562)
T 3a79_B          254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEM  331 (562)
T ss_dssp             EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTC
T ss_pred             EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccC
Confidence                   00000   0000112389999999999988888777     6666666677776665  344 2211111235


Q ss_pred             CccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccC--Ccccc
Q 036984          255 KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEI--PAQLC  332 (603)
Q Consensus       255 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~  332 (603)
                      +|+.|++++|.+. .++  ....+++|++|++++|.+.+        ..|..++.+++|++|++++|++++..  |..+.
T Consensus       332 ~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  400 (562)
T 3a79_B          332 NIKMLSISDTPFI-HMV--CPPSPSSFTFLNFTQNVFTD--------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK  400 (562)
T ss_dssp             CCSEEEEESSCCC-CCC--CCSSCCCCCEEECCSSCCCT--------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT
T ss_pred             cceEEEccCCCcc-ccc--CccCCCCceEEECCCCcccc--------chhhhhcccCCCCEEECCCCCcCCcccchhhhc
Confidence            7999999999986 333  22458899999998887653        45777888999999999999999743  46789


Q ss_pred             CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCC
Q 036984          333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL  412 (603)
Q Consensus       333 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  412 (603)
                      .+++|++|++++|++++.+|.                                        ..+..+++|+.|++++|.+
T Consensus       401 ~l~~L~~L~l~~N~l~~~~~~----------------------------------------~~~~~l~~L~~L~l~~n~l  440 (562)
T 3a79_B          401 NMSSLETLDVSLNSLNSHAYD----------------------------------------RTCAWAESILVLNLSSNML  440 (562)
T ss_dssp             TCTTCCEEECTTSCCBSCCSS----------------------------------------CCCCCCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCcCCCccCh----------------------------------------hhhcCcccCCEEECCCCCC
Confidence            999999999999999864542                                        1234478999999999999


Q ss_pred             cccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCC-ccCCCCCCceecccCcccccCC
Q 036984          413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ-LIVLTTLAVFRVAYNNLSGKIP  488 (603)
Q Consensus       413 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~~~p  488 (603)
                      ++..|..+.  ++|++|+|++|+++ .+|..+.++++|++|++++|++++..+. +..+++|+.|++++|++.+..|
T Consensus       441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            877766554  79999999999999 6777777999999999999999954444 8899999999999999998766

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.4e-37  Score=337.39  Aligned_cols=426  Identities=22%  Similarity=0.237  Sum_probs=289.1

Q ss_pred             CCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCC
Q 036984            5 KNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSL   83 (603)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L   83 (603)
                      +++++|+|++|.+..-..   .....+++|++|+|++|+|+.  +.+.+|.++++|++|+|++|+++.+++.+|. +++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~---~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred             cCCCEEEeeCCCCCCCCH---HHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence            378999999998853321   112338999999999999985  3456799999999999999999999999998 9999


Q ss_pred             CEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccC-cCccCCCCCCCCEEEcccCcCCccCCcccccCCCCC----cE
Q 036984           84 QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGS-LPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSI----EE  158 (603)
Q Consensus        84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L----~~  158 (603)
                      ++|++++|+++++.+..|+++++|++|++++|.+++. .|..++++++|++|++++|.+++..+. .+..+.++    ..
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~l~~L~~l~~~~~~  205 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLS  205 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTCTTCCCE
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc-cccchhhhhhhhhh
Confidence            9999999999998778899999999999999999754 577889999999999999999753332 44433222    23


Q ss_pred             EEccCceeeeec--------------------------------------------------------------------
Q 036984          159 LILSNNHFQIPI--------------------------------------------------------------------  170 (603)
Q Consensus       159 L~l~~n~~~~~~--------------------------------------------------------------------  170 (603)
                      ++++.|.+....                                                                    
T Consensus       206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~  285 (635)
T 4g8a_A          206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE  285 (635)
T ss_dssp             EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred             hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence            444433321100                                                                    


Q ss_pred             ------------CccccCCCCCCceeecc-ceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCC
Q 036984          171 ------------SLEPLSNLSKLKAFNGE-IYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHL  237 (603)
Q Consensus       171 ------------~~~~l~~L~~L~~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n  237 (603)
                                  ....+..+..+..+... .....   ...+.....++.|++.++.+....+   ..+..|+.+++..|
T Consensus       286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n  359 (635)
T 4g8a_A          286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSN  359 (635)
T ss_dssp             EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE---CGGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESC
T ss_pred             hhhhhhcccccchhhhhhhhccccccccccccccc---ccccccchhhhhhhcccccccCcCc---ccchhhhhcccccc
Confidence                        00001111122223222 11111   1123334478888888887654433   23456777777777


Q ss_pred             cccCCCCCCCccccccCCccEEEccCccccc--cCChhhhhcCCCCcEEecCCCCccccc---------------CCcCc
Q 036984          238 NLSGEFPNWLMPIHCLQKLATLDVSNNFFQG--HIPVEIGTYLPGLMHLNLSRNAFNDLS---------------YNRLQ  300 (603)
Q Consensus       238 ~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~l~---------------~~~~~  300 (603)
                      .+....+     ...+++|+.+++++|.+..  ..+...+. +.+|+.+++..+....+.               .+...
T Consensus       360 ~~~~~~~-----~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  433 (635)
T 4g8a_A          360 KGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK  433 (635)
T ss_dssp             CSCCBCC-----CCBCTTCCEEECCSSCCBEEEECCHHHHS-CSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred             cCCCCcc-----cccccccccchhhccccccccccccchhh-hhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence            6543322     2356777777777776642  23333333 566777776666543221               11100


Q ss_pred             c-cCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCC
Q 036984          301 G-SIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPA  379 (603)
Q Consensus       301 ~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (603)
                      . ..+..+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+...                             
T Consensus       434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~-----------------------------  484 (635)
T 4g8a_A          434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-----------------------------  484 (635)
T ss_dssp             STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-----------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc-----------------------------
Confidence            0 1112333445555555555555555555555555555555555543211                             


Q ss_pred             eeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCc
Q 036984          380 LSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNL  459 (603)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  459 (603)
                                 .....+..+++|+.|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|+.||+++|+
T Consensus       485 -----------~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          485 -----------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             -----------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred             -----------cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence                       112345568899999999999999999999999999999999999999889999999999999999999


Q ss_pred             CcccCC-CccCC-CCCCceecccCcccccCC
Q 036984          460 LHGKIP-QLIVL-TTLAVFRVAYNNLSGKIP  488 (603)
Q Consensus       460 l~~~~~-~~~~l-~~L~~L~l~~N~l~~~~p  488 (603)
                      +++.+| .+..+ ++|+.|++++|++.+...
T Consensus       554 l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          554 IMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            998888 67776 689999999999998654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-36  Score=318.64  Aligned_cols=346  Identities=19%  Similarity=0.193  Sum_probs=220.3

Q ss_pred             CEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc
Q 036984           61 QELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ  140 (603)
Q Consensus        61 ~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~  140 (603)
                      +.++.+++.++.++...  .+++++|++++|.+++..+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|.
T Consensus        14 ~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TEEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            45666666666665543  3566777777777776666667777777777777777766666677777777777777777


Q ss_pred             CCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcC
Q 036984          141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFP  220 (603)
Q Consensus       141 i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  220 (603)
                      ++ .++...|..+++|++|++++|.+....                                                 +
T Consensus        92 l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~-------------------------------------------------~  121 (477)
T 2id5_A           92 LK-LIPLGVFTGLSNLTKLDISENKIVILL-------------------------------------------------D  121 (477)
T ss_dssp             CC-SCCTTSSTTCTTCCEEECTTSCCCEEC-------------------------------------------------T
T ss_pred             CC-ccCcccccCCCCCCEEECCCCccccCC-------------------------------------------------h
Confidence            66 345445666677777777666554211                                                 2


Q ss_pred             hhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCc
Q 036984          221 KFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQ  300 (603)
Q Consensus       221 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~  300 (603)
                      ..+..+++|+.|++++|.+.+..+..   +..+++|+.|++++|.+. .++...+..+++|+.|++++|.+..+.     
T Consensus       122 ~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~-----  192 (477)
T 2id5_A          122 YMFQDLYNLKSLEVGDNDLVYISHRA---FSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIR-----  192 (477)
T ss_dssp             TTTTTCTTCCEEEECCTTCCEECTTS---STTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEEC-----
T ss_pred             hHccccccCCEEECCCCccceeChhh---ccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeC-----
Confidence            23344455555556555555444443   455667777777777776 556555555777777777666654432     


Q ss_pred             ccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCe
Q 036984          301 GSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPAL  380 (603)
Q Consensus       301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (603)
                         +..+..+++|++|++++|...+.++.......+|+.|++++|+++. +|                            
T Consensus       193 ---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~----------------------------  240 (477)
T 2id5_A          193 ---DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VP----------------------------  240 (477)
T ss_dssp             ---TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CC----------------------------
T ss_pred             ---hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cC----------------------------
Confidence               3345556777777777776665555555555677777777777752 11                            


Q ss_pred             eEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcC
Q 036984          381 SYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL  460 (603)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  460 (603)
                                  ...+..+++|+.|+|++|.+++..+..+..+++|++|+|++|++++..|..|.++++|+.|++++|++
T Consensus       241 ------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  308 (477)
T 2id5_A          241 ------------YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL  308 (477)
T ss_dssp             ------------HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred             ------------HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence                        12334466777777777777766666777777777777777777777777777777777777777777


Q ss_pred             cccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984          461 HGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       461 ~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~  512 (603)
                      ++..+ .+..+++|+.|++++|++.+..+.. .-+.......+.++...|..|
T Consensus       309 ~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          309 TTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             SCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred             ceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCc
Confidence            75444 5667777777777777777654321 111223344556666666544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.9e-35  Score=308.68  Aligned_cols=344  Identities=24%  Similarity=0.327  Sum_probs=244.5

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE  109 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (603)
                      +++++.|+++++.+...    ..+..+++|++|++++|.++++++  +. +++|++|++++|.+.+..+  +.++++|++
T Consensus        45 l~~l~~L~l~~~~i~~l----~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSI----DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hccccEEecCCCCCccC----cchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            56777777777776642    236677777777777777777665  44 7777777777777776433  777777777


Q ss_pred             EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984          110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY  189 (603)
Q Consensus       110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~  189 (603)
                      |++++|.+++..+  +.++++|++|++++|.+.+ ++  .+..+++|++|++++ .+...                    
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~-~~~~~--------------------  170 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGN-QVTDL--------------------  170 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEE-SCCCC--------------------
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCC-cccCc--------------------
Confidence            7777777775432  7777777777777777763 33  366777777777742 22110                    


Q ss_pred             eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccccc
Q 036984          190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGH  269 (603)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~  269 (603)
                             ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+     +..+++|+.|++++|.+. .
T Consensus       171 -------~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~-~  235 (466)
T 1o6v_A          171 -------KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLK-D  235 (466)
T ss_dssp             -------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCC-C
T ss_pred             -------hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-----ccccCCCCEEECCCCCcc-c
Confidence                   1123334777888888877653  347788888888888888775443     456788888888888887 4


Q ss_pred             CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984          270 IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG  349 (603)
Q Consensus       270 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  349 (603)
                      ++  .+..+++|+.|++++|.+..+.          .+..+++|++|++++|.+++..+  +..+++|+.|++++|++++
T Consensus       236 ~~--~l~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~  301 (466)
T 1o6v_A          236 IG--TLASLTNLTDLDLANNQISNLA----------PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED  301 (466)
T ss_dssp             CG--GGGGCTTCSEEECCSSCCCCCG----------GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC
T ss_pred             ch--hhhcCCCCCEEECCCCccccch----------hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC
Confidence            43  2344788888888887765432          15667888888888888876544  7788888888888888763


Q ss_pred             CCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEE
Q 036984          350 HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL  429 (603)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  429 (603)
                      ..+                                           +..+++|+.|++++|.+++..|  +..+++|++|
T Consensus       302 ~~~-------------------------------------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  336 (466)
T 1o6v_A          302 ISP-------------------------------------------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  336 (466)
T ss_dssp             CGG-------------------------------------------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             chh-------------------------------------------hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence            211                                           3456788888888888886655  6778888888


Q ss_pred             ecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccc
Q 036984          430 NLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSG  485 (603)
Q Consensus       430 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~  485 (603)
                      ++++|++++.  ..+.++++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus       337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence            8888888854  457788888888888888887666 7778888888888888885

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.6e-35  Score=307.98  Aligned_cols=346  Identities=27%  Similarity=0.343  Sum_probs=287.8

Q ss_pred             CCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCE
Q 036984           55 CQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQV  133 (603)
Q Consensus        55 ~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  133 (603)
                      ..+++++.|+++++.+..++.  +. +++|++|++++|.+.+..+  +.++++|++|++++|.+++..+  +.++++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            357889999999999988753  44 9999999999999998544  9999999999999999986654  999999999


Q ss_pred             EEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCC
Q 036984          134 LDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGY  213 (603)
Q Consensus       134 L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  213 (603)
                      |++++|.+++ ++.  +..+++|++|++++|.+....   .+..++                        +|+.|+++ +
T Consensus       117 L~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~------------------------~L~~L~l~-~  165 (466)
T 1o6v_A          117 LTLFNNQITD-IDP--LKNLTNLNRLELSSNTISDIS---ALSGLT------------------------SLQQLSFG-N  165 (466)
T ss_dssp             EECCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCCG---GGTTCT------------------------TCSEEEEE-E
T ss_pred             EECCCCCCCC-ChH--HcCCCCCCEEECCCCccCCCh---hhccCC------------------------cccEeecC-C
Confidence            9999999985 443  889999999999999876422   233333                        55566664 2


Q ss_pred             CCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCccc
Q 036984          214 RDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFND  293 (603)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  293 (603)
                      .+...  ..+..+++|+.|++++|.+.+. +.    +..+++|++|++++|.+.+..|   +..+++|+.|++++|.+.+
T Consensus       166 ~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~~----l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~  235 (466)
T 1o6v_A          166 QVTDL--KPLANLTTLERLDISSNKVSDI-SV----LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD  235 (466)
T ss_dssp             SCCCC--GGGTTCTTCCEEECCSSCCCCC-GG----GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC
T ss_pred             cccCc--hhhccCCCCCEEECcCCcCCCC-hh----hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCccc
Confidence            33332  2388999999999999998743 22    6789999999999999985433   3448999999999998765


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCc
Q 036984          294 LSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWD  373 (603)
Q Consensus       294 l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (603)
                      +          ..+..+++|++|++++|.+++..+  +..+++|+.|++++|++++..+                     
T Consensus       236 ~----------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---------------------  282 (466)
T 1o6v_A          236 I----------GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP---------------------  282 (466)
T ss_dssp             C----------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG---------------------
T ss_pred             c----------hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc---------------------
Confidence            4          246678999999999999987654  8899999999999999974211                     


Q ss_pred             CCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEE
Q 036984          374 HASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESL  453 (603)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  453 (603)
                                            +..+++|+.|++++|.+++..+  +..+++|++|++++|++++..|  +..+++|++|
T Consensus       283 ----------------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  336 (466)
T 1o6v_A          283 ----------------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  336 (466)
T ss_dssp             ----------------------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             ----------------------ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence                                  3457899999999999996554  8899999999999999997765  7889999999


Q ss_pred             eCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984          454 DLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY  509 (603)
Q Consensus       454 ~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c  509 (603)
                      ++++|++++ ++.+..+++|+.|++++|++++..|  +..++.++.+++++|++..
T Consensus       337 ~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          337 FFYNNKVSD-VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ECCSSCCCC-CGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ECCCCccCC-chhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            999999995 4788899999999999999998887  7899999999999999877

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=311.81  Aligned_cols=349  Identities=20%  Similarity=0.179  Sum_probs=222.0

Q ss_pred             cEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEecc
Q 036984           35 RLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYID  113 (603)
Q Consensus        35 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (603)
                      +.++.+++.++.   .+..+  .+++++|++++|.++.+++..|. +++|++|++++|.+.+..|..|.++++|++|+|+
T Consensus        14 ~~v~c~~~~l~~---ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFVA---VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCSS---CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc---CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence            466777766653   22222  35778888888888887777777 8888888888888887777788888888888888


Q ss_pred             CCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeec
Q 036984          114 NNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETE  193 (603)
Q Consensus       114 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~  193 (603)
                      +|.++...+..|.++++|++|++++|.+.+..+. .+..+++|++|++++|.+....+ ..                   
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~-------------------  147 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISH-RA-------------------  147 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECT-TS-------------------
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeCh-hh-------------------
Confidence            8888766666778888888888888888754444 67778888888888876653221 11                   


Q ss_pred             cCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChh
Q 036984          194 SHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVE  273 (603)
Q Consensus       194 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~  273 (603)
                           +..+.+|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..   +..+++|+.|++++|...+.+|..
T Consensus       148 -----~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~  219 (477)
T 2id5_A          148 -----FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS---FKRLYRLKVLEISHWPYLDTMTPN  219 (477)
T ss_dssp             -----STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC---SCSCTTCCEEEEECCTTCCEECTT
T ss_pred             -----ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh---cccCcccceeeCCCCccccccCcc
Confidence                 111224444444444444444444555555555555555554433332   334445555555544433333332


Q ss_pred             hhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCCh
Q 036984          274 IGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPF  353 (603)
Q Consensus       274 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  353 (603)
                      .                                 ....+|++|++++|.++...+..+..+++|+.|++++|++++..+ 
T Consensus       220 ~---------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-  265 (477)
T 2id5_A          220 C---------------------------------LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG-  265 (477)
T ss_dssp             T---------------------------------TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT-
T ss_pred             c---------------------------------ccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh-
Confidence            2                                 223466777777777765544566777777777777777753222 


Q ss_pred             hhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccc
Q 036984          354 CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH  433 (603)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  433 (603)
                                                              ..+..+++|+.|+|++|++++..+..|..+++|++|+|++
T Consensus       266 ----------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (477)
T 2id5_A          266 ----------------------------------------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG  305 (477)
T ss_dssp             ----------------------------------------TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred             ----------------------------------------hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence                                                    1233456777777777777777777788888888888888


Q ss_pred             ccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcc
Q 036984          434 NNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRV  491 (603)
Q Consensus       434 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~  491 (603)
                      |++++..+..|..+++|++|++++|++.+..+..+-......+++.++...+..|..+
T Consensus       306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~  363 (477)
T 2id5_A          306 NQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFV  363 (477)
T ss_dssp             SCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGG
T ss_pred             CcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHH
Confidence            8888766677788888888888888887654421122233445566666666555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.3e-34  Score=301.23  Aligned_cols=354  Identities=19%  Similarity=0.160  Sum_probs=246.9

Q ss_pred             hcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCc
Q 036984           30 LMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLR  108 (603)
Q Consensus        30 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  108 (603)
                      .+++|++|++++|.+++.   + .+..+++|++|++++|.+++++   +. +++|++|++++|.+++. +  ++++++|+
T Consensus        40 ~l~~L~~L~Ls~n~l~~~---~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDM---T-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             HHTTCCEEECCSSCCCCC---T-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             HcCCCCEEEccCCCcccC---h-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence            378899999999988863   2 5888999999999999988874   44 88999999999998884 3  78899999


Q ss_pred             EEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccc
Q 036984          109 ELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI  188 (603)
Q Consensus       109 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~  188 (603)
                      +|++++|.+++. +  ++++++|++|++++|.+++ +   .+..+++|++|++++|...+...   +..           
T Consensus       110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~~---~~~-----------  168 (457)
T 3bz5_A          110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKLD---VTP-----------  168 (457)
T ss_dssp             EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCCC---CTT-----------
T ss_pred             EEECCCCcCCee-c--CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCcccccc---ccc-----------
Confidence            999999998863 4  8889999999999999885 3   37788999999999985432221   222           


Q ss_pred             eeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccc
Q 036984          189 YLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQG  268 (603)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~  268 (603)
                                   +++|+.|++++|.+++. +  +..+++|+.|++++|.+++. +     +..+++|+.|++++|.+++
T Consensus       169 -------------l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~-~-----l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          169 -------------QTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL-D-----LNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             -------------CTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC-C-----CTTCTTCSEEECCSSCCSC
T ss_pred             -------------CCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee-c-----cccCCCCCEEECcCCcccc
Confidence                         23566666666666552 2  55666677777777766543 1     4556667777777777663


Q ss_pred             cCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCc
Q 036984          269 HIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS  348 (603)
Q Consensus       269 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  348 (603)
                       +|   +..+++|+.|++++|.+..+....+.. +...--...+|+.|++++|.+.+.+|  +..+++|+.|++++|+..
T Consensus       227 -ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~-L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l  299 (457)
T 3bz5_A          227 -ID---VTPLTQLTYFDCSVNPLTELDVSTLSK-LTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL  299 (457)
T ss_dssp             -CC---CTTCTTCSEEECCSSCCSCCCCTTCTT-CCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred             -cC---ccccCCCCEEEeeCCcCCCcCHHHCCC-CCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence             55   233666777776666655432111110 00000001245666666666655554  467788999999999887


Q ss_pred             cCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCE
Q 036984          349 GHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA  428 (603)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  428 (603)
                      +.+|.....+.                                 .-.+..+++|+.|++++|++++. +  +..+++|+.
T Consensus       300 ~~l~~~~~~L~---------------------------------~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~  343 (457)
T 3bz5_A          300 YLLDCQAAGIT---------------------------------ELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKS  343 (457)
T ss_dssp             CEEECTTCCCS---------------------------------CCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSE
T ss_pred             ceeccCCCcce---------------------------------EechhhcccCCEEECCCCccccc-c--cccCCcCcE
Confidence            66663221111                                 00133457899999999999874 3  888899999


Q ss_pred             EecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcc
Q 036984          429 LNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRV  491 (603)
Q Consensus       429 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~  491 (603)
                      |++++|++++        ++.|+.|++++|.+.+.    ..+..|+.+++++|+++|.+|..+
T Consensus       344 L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          344 LSCVNAHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             EECCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             EECCCCCCCC--------ccccccccccCCcEEec----ceeeecCccccccCcEEEEcChhH
Confidence            9999999985        35677788999988865    245678889999999999999754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.3e-35  Score=298.27  Aligned_cols=333  Identities=18%  Similarity=0.191  Sum_probs=202.9

Q ss_pred             CCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEE
Q 036984           56 QLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVL  134 (603)
Q Consensus        56 ~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  134 (603)
                      .+++++.|++++|.++.+++..|. +++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            457888888888888888877777 8888888888888887777788888888888888888887777778888888888


Q ss_pred             EcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCC
Q 036984          135 DVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYR  214 (603)
Q Consensus       135 ~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  214 (603)
                      ++++|.++ .+|...+..+++|++|++++|.+...                                             
T Consensus       123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~---------------------------------------------  156 (390)
T 3o6n_A          123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI---------------------------------------------  156 (390)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBC---------------------------------------------
T ss_pred             ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCcc---------------------------------------------
Confidence            88888887 46664667788888888888766421                                             


Q ss_pred             CCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccc
Q 036984          215 DDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDL  294 (603)
Q Consensus       215 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l  294 (603)
                          .+..+..+++|+.|++++|.+++. +     +..+++|+.|++++|.+. .++     ..++|+.|++++|.+..+
T Consensus       157 ----~~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~l~~L~~L~l~~n~l~-~~~-----~~~~L~~L~l~~n~l~~~  220 (390)
T 3o6n_A          157 ----EDDTFQATTSLQNLQLSSNRLTHV-D-----LSLIPSLFHANVSYNLLS-TLA-----IPIAVEELDASHNSINVV  220 (390)
T ss_dssp             ----CTTTTSSCTTCCEEECCSSCCSBC-C-----GGGCTTCSEEECCSSCCS-EEE-----CCSSCSEEECCSSCCCEE
T ss_pred             ----ChhhccCCCCCCEEECCCCcCCcc-c-----cccccccceeeccccccc-ccC-----CCCcceEEECCCCeeeec
Confidence                122233444455555555554432 1     334455555555555554 211     123555555555554433


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcC
Q 036984          295 SYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDH  374 (603)
Q Consensus       295 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (603)
                      ..           ...++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..                    
T Consensus       221 ~~-----------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~--------------------  267 (390)
T 3o6n_A          221 RG-----------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP--------------------  267 (390)
T ss_dssp             EC-----------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG--------------------
T ss_pred             cc-----------cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH--------------------
Confidence            21           0124555666666655532  34555566666666666555332322                    


Q ss_pred             CCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEe
Q 036984          375 ASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLD  454 (603)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  454 (603)
                                           +..+++|+.|++++|++++ ++..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus       268 ---------------------~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          268 ---------------------FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  324 (390)
T ss_dssp             ---------------------GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             ---------------------ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence                                 2224456666666666553 3444455666666666666666 4455555666666666


Q ss_pred             CCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCC
Q 036984          455 LSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYG  510 (603)
Q Consensus       455 Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~  510 (603)
                      +++|+++.. + +..+++|+.|++++|++.+....  .-+..+....+.+++..|.
T Consensus       325 L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~  376 (390)
T 3o6n_A          325 LDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCK  376 (390)
T ss_dssp             CCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCC
T ss_pred             CCCCcccee-C-chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCceec
Confidence            666666632 2 44566667777777766653221  2233444455666666664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.5e-34  Score=298.88  Aligned_cols=269  Identities=21%  Similarity=0.223  Sum_probs=157.5

Q ss_pred             CCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCC-------------CCEEEccCCcC
Q 036984            4 FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVH-------------LQELYIRDNDL   70 (603)
Q Consensus         4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~-------------L~~L~Ls~n~i   70 (603)
                      .+.|++|+++++.+.   .+...+ ..+++|++|++++|.+.+.  .+..++++++             +++|++++|.+
T Consensus        10 ~~~L~~L~l~~n~l~---~iP~~i-~~L~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l   83 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLT---EMPVEA-ENVKSKTEYYNAWSEWERN--APPGNGEQREMAVSRLRDCLDRQAHELELNNLGL   83 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHT--SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred             cccchhhhcccCchh---hCChhH-hcccchhhhhccCCccccc--CCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence            466778888877663   222222 3367788888888776542  3455666665             47888888877


Q ss_pred             CCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccc
Q 036984           71 RDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPL  150 (603)
Q Consensus        71 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  150 (603)
                      ++++..   .++|++|++++|.+++ +|..   .++|++|++++|.+++. +..   .++|++|++++|.+++ +|.  +
T Consensus        84 ~~lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp~--~  149 (454)
T 1jl5_A           84 SSLPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LPE--L  149 (454)
T ss_dssp             SCCCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CCC--C
T ss_pred             ccCCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Ccc--c
Confidence            776542   4678888888887777 4542   36788888888877642 221   1578888888887774 553  7


Q ss_pred             cCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCC
Q 036984          151 MLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLK  230 (603)
Q Consensus       151 ~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  230 (603)
                      ..+++|++|++++|.++....  .                           ..+|+.|++++|.+.+ +| .+..+++|+
T Consensus       150 ~~l~~L~~L~l~~N~l~~lp~--~---------------------------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~  198 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKKLPD--L---------------------------PPSLEFIAAGNNQLEE-LP-ELQNLPFLT  198 (454)
T ss_dssp             TTCTTCCEEECCSSCCSCCCC--C---------------------------CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred             CCCCCCCEEECCCCcCcccCC--C---------------------------cccccEEECcCCcCCc-Cc-cccCCCCCC
Confidence            777888888888877653111  0                           0166777777777665 33 466777777


Q ss_pred             EEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCC
Q 036984          231 NADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL  310 (603)
Q Consensus       231 ~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l  310 (603)
                      .|++++|.+.+ +|..      .++|++|++++|.+. .+|.  +..+++|++|++++|.+..+.         ..   .
T Consensus       199 ~L~l~~N~l~~-l~~~------~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l~---------~~---~  256 (454)
T 1jl5_A          199 AIYADNNSLKK-LPDL------PLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTLP---------DL---P  256 (454)
T ss_dssp             EEECCSSCCSS-CCCC------CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSCC---------SC---C
T ss_pred             EEECCCCcCCc-CCCC------cCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCccc---------cc---c
Confidence            77777777664 3332      246777777777776 5663  334677777777776655332         11   3


Q ss_pred             CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984          311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG  349 (603)
Q Consensus       311 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  349 (603)
                      ++|++|++++|.+++ +|..   .++|+.|++++|++++
T Consensus       257 ~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          257 PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred             cccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence            567777777777764 3322   3667777777777653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=9e-34  Score=290.57  Aligned_cols=310  Identities=22%  Similarity=0.252  Sum_probs=253.0

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE  109 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (603)
                      +++++.|+++++.+...  .+..|.++++|++|++++|.+.++++..|. +++|++|++++|.+.+..|..|.++++|++
T Consensus        44 l~~l~~l~l~~~~l~~l--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKL--PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEESEE--CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchhhC--ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            68999999999988752  334578999999999999999999988888 999999999999999988888999999999


Q ss_pred             EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984          110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY  189 (603)
Q Consensus       110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~  189 (603)
                      |++++|.++...+..|.++++|++|++++|.+.+ ++...+..+++|++|++++|.++.. +                  
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~------------------  181 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV-D------------------  181 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC-C------------------
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCcc-c------------------
Confidence            9999999996666668999999999999999985 4444789999999999999976521 1                  


Q ss_pred             eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccccc
Q 036984          190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGH  269 (603)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~  269 (603)
                                                       +..+++|+.+++++|.+.+        +...++|+.|++++|.+. .
T Consensus       182 ---------------------------------~~~l~~L~~L~l~~n~l~~--------~~~~~~L~~L~l~~n~l~-~  219 (390)
T 3o6n_A          182 ---------------------------------LSLIPSLFHANVSYNLLST--------LAIPIAVEELDASHNSIN-V  219 (390)
T ss_dssp             ---------------------------------GGGCTTCSEEECCSSCCSE--------EECCSSCSEEECCSSCCC-E
T ss_pred             ---------------------------------cccccccceeecccccccc--------cCCCCcceEEECCCCeee-e
Confidence                                             2234456667777766543        233457888888888887 4


Q ss_pred             CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984          270 IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG  349 (603)
Q Consensus       270 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  349 (603)
                      +|...   .++|+.|++++|.+.+.          .+++.+++|++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus       220 ~~~~~---~~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (390)
T 3o6n_A          220 VRGPV---NVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  286 (390)
T ss_dssp             EECCC---CSSCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE
T ss_pred             ccccc---cccccEEECCCCCCccc----------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc
Confidence            55433   46889998888877543          356778999999999999998889999999999999999999873


Q ss_pred             CCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEE
Q 036984          350 HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL  429 (603)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  429 (603)
                      . |.                                         ....+++|+.|++++|.++ .+|..+..+++|++|
T Consensus       287 ~-~~-----------------------------------------~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L  323 (390)
T 3o6n_A          287 L-NL-----------------------------------------YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL  323 (390)
T ss_dssp             E-EC-----------------------------------------SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred             c-Cc-----------------------------------------ccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence            1 11                                         1133678999999999998 567778889999999


Q ss_pred             ecccccccccCCcCCcCCCCCCEEeCCCCcCccc
Q 036984          430 NLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGK  463 (603)
Q Consensus       430 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  463 (603)
                      ++++|+++.. +  +..+++|+.|++++|++.+.
T Consensus       324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             ECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            9999999854 3  67789999999999999864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=7.4e-34  Score=307.02  Aligned_cols=334  Identities=18%  Similarity=0.196  Sum_probs=224.6

Q ss_pred             CCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEE
Q 036984           56 QLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVL  134 (603)
Q Consensus        56 ~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  134 (603)
                      .+++++.+++++|.+..+++..|. +++|++|++++|.+.+..|..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            356777888888877777777776 7788888888888777666677788888888888888877777777778888888


Q ss_pred             EcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCC
Q 036984          135 DVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYR  214 (603)
Q Consensus       135 ~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  214 (603)
                      +|++|.++ .+|...|..+++|++|++++|.+.                                               
T Consensus       129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-----------------------------------------------  160 (597)
T 3oja_B          129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-----------------------------------------------  160 (597)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-----------------------------------------------
T ss_pred             EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCC-----------------------------------------------
Confidence            88888777 455545677777777777777654                                               


Q ss_pred             CCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccc
Q 036984          215 DDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDL  294 (603)
Q Consensus       215 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l  294 (603)
                        +..+..+..+++|+.|++++|.+.+..      +..+++|+.|++++|.+.+ ++     ..++|+.|++++|.+..+
T Consensus       161 --~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~l~~L~~L~l~~n~l~~-l~-----~~~~L~~L~ls~n~l~~~  226 (597)
T 3oja_B          161 --RIEDDTFQATTSLQNLQLSSNRLTHVD------LSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHNSINVV  226 (597)
T ss_dssp             --BCCTTTTTTCTTCCEEECTTSCCSBCC------GGGCTTCSEEECCSSCCSE-EE-----CCTTCSEEECCSSCCCEE
T ss_pred             --CCChhhhhcCCcCcEEECcCCCCCCcC------hhhhhhhhhhhcccCcccc-cc-----CCchhheeeccCCccccc
Confidence              222334555566666666666665431      3456667777777776652 21     134677777777666543


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcC
Q 036984          295 SYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDH  374 (603)
Q Consensus       295 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (603)
                      ..     ..      .++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|..+                   
T Consensus       227 ~~-----~~------~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~-------------------  274 (597)
T 3oja_B          227 RG-----PV------NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF-------------------  274 (597)
T ss_dssp             EC-----SC------CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG-------------------
T ss_pred             cc-----cc------CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh-------------------
Confidence            31     11      24677777777777642  556677777777777777765444333                   


Q ss_pred             CCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEe
Q 036984          375 ASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLD  454 (603)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  454 (603)
                                            ..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+
T Consensus       275 ----------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          275 ----------------------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  330 (597)
T ss_dssp             ----------------------TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             ----------------------cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence                                  235677777777777774 4555566778888888888887 5666677777888888


Q ss_pred             CCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCC
Q 036984          455 LSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQ  511 (603)
Q Consensus       455 Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~  511 (603)
                      +++|++++. | +..+++|+.|++++|++.+..+.  ..+..+....+.+++..|+.
T Consensus       331 L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~  383 (597)
T 3oja_B          331 LDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKI  383 (597)
T ss_dssp             CCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCT
T ss_pred             CCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCCc
Confidence            888887743 3 55677888888888888765432  22445555567777777754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.4e-32  Score=285.95  Aligned_cols=347  Identities=18%  Similarity=0.160  Sum_probs=270.6

Q ss_pred             cccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCC
Q 036984           52 QGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTS  130 (603)
Q Consensus        52 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  130 (603)
                      ..+.++++|++|++++|.+++++  .+. +++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  ++++++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~  107 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK  107 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred             cChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence            46788999999999999999875  355 99999999999999984 4  88999999999999999864 3  899999


Q ss_pred             CCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEec
Q 036984          131 LQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISL  210 (603)
Q Consensus       131 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  210 (603)
                      |++|++++|.+++ ++   +..+++|++|++++|.+++. +   +                        ..+.+|+.|++
T Consensus       108 L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-~---l------------------------~~l~~L~~L~l  155 (457)
T 3bz5_A          108 LTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-D---V------------------------SHNTQLTELDC  155 (457)
T ss_dssp             CCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-C---C------------------------TTCTTCCEEEC
T ss_pred             CCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-c---c------------------------ccCCcCCEEEC
Confidence            9999999999985 43   78999999999999987632 1   1                        22337888889


Q ss_pred             cCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCC
Q 036984          211 SGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNA  290 (603)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~  290 (603)
                      ++|...+.+  .+..+++|+.|++++|.+++ +|     +..+++|+.|++++|.+++ ++   +..+++|+.|++++|+
T Consensus       156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~-----l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD-----VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNK  223 (457)
T ss_dssp             TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC-----CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSC
T ss_pred             CCCCccccc--ccccCCcCCEEECCCCccce-ec-----cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCc
Confidence            888655444  47789999999999999986 33     5678999999999999984 44   3448999999999998


Q ss_pred             cccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCC
Q 036984          291 FNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAP  370 (603)
Q Consensus       291 l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~  370 (603)
                      +..+         |  ++.+++|++|++++|++++..   ...+++|+.|++++|++...--                  
T Consensus       224 l~~i---------p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l------------------  271 (457)
T 3bz5_A          224 LTEI---------D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDL------------------  271 (457)
T ss_dssp             CSCC---------C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCC------------------
T ss_pred             cccc---------C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEEC------------------
Confidence            7643         3  567899999999999999764   3556777777777776642100                  


Q ss_pred             CCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCch--------hccCcCcCCEEecccccccccCCc
Q 036984          371 TWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPT--------QIGYLTRIRALNLSHNNLTGTIPI  442 (603)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~l~~l~~L~~L~Ls~N~l~~~~~~  442 (603)
                                     .+...........+++|+.|++++|...+.+|.        .+..+++|++|++++|++++. + 
T Consensus       272 ---------------~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~-  334 (457)
T 3bz5_A          272 ---------------THNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D-  334 (457)
T ss_dssp             ---------------TTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C-
T ss_pred             ---------------CCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c-
Confidence                           000000011123468899999999987655553        255678999999999999974 3 


Q ss_pred             CCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984          443 TFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       443 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~  512 (603)
                       +.++++|+.||+++|++++       ++.|..|++++|.++|.     ..+..+..++++.|.+...-|
T Consensus       335 -l~~l~~L~~L~l~~N~l~~-------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip  391 (457)
T 3bz5_A          335 -VSHNTKLKSLSCVNAHIQD-------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS  391 (457)
T ss_dssp             -CTTCTTCSEEECCSSCCCB-------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred             -cccCCcCcEEECCCCCCCC-------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence             8899999999999999985       35678889999999985     345667778888887765333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.6e-32  Score=285.18  Aligned_cols=373  Identities=25%  Similarity=0.292  Sum_probs=214.4

Q ss_pred             CCCCCCCceecccccccccc-c----chHH-----HHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcC
Q 036984            1 FHEFKNLEHLVMDQMLVEVN-T----SFLQ-----IVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDL   70 (603)
Q Consensus         1 f~~~~~L~~L~l~~~~~~~~-~----~~~~-----~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i   70 (603)
                      |.++++|++|++++|.+... .    .+..     .......++++|++++|.+++.   +.   -.++|++|++++|.+
T Consensus        30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l---p~---~~~~L~~L~l~~n~l  103 (454)
T 1jl5_A           30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL---PE---LPPHLESLVASCNSL  103 (454)
T ss_dssp             ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC---CS---CCTTCSEEECCSSCC
T ss_pred             HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC---CC---CcCCCCEEEccCCcC
Confidence            46789999999999865411 1    1111     1111134689999999998763   22   247899999999999


Q ss_pred             CCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccc
Q 036984           71 RDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPL  150 (603)
Q Consensus        71 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  150 (603)
                      ++++..   .++|++|++++|++++ ++..   .++|++|++++|.+++ +| .|+++++|++|++++|.+++ +|. . 
T Consensus       104 ~~lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~-~-  171 (454)
T 1jl5_A          104 TELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD-L-  171 (454)
T ss_dssp             SSCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC-C-
T ss_pred             Cccccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC-C-
Confidence            986642   5899999999999987 3321   2689999999999996 66 59999999999999999984 665 2 


Q ss_pred             cCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCC
Q 036984          151 MLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLK  230 (603)
Q Consensus       151 ~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  230 (603)
                        ..+|++|++++|.++...   .+.+++                        +|+.|++++|.+.+ +|..   .++|+
T Consensus       172 --~~~L~~L~L~~n~l~~l~---~~~~l~------------------------~L~~L~l~~N~l~~-l~~~---~~~L~  218 (454)
T 1jl5_A          172 --PPSLEFIAAGNNQLEELP---ELQNLP------------------------FLTAIYADNNSLKK-LPDL---PLSLE  218 (454)
T ss_dssp             --CTTCCEEECCSSCCSSCC---CCTTCT------------------------TCCEEECCSSCCSS-CCCC---CTTCC
T ss_pred             --cccccEEECcCCcCCcCc---cccCCC------------------------CCCEEECCCCcCCc-CCCC---cCccc
Confidence              359999999999887421   244444                        55556666665543 2221   13666


Q ss_pred             EEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCC
Q 036984          231 NADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL  310 (603)
Q Consensus       231 ~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l  310 (603)
                      .|++++|.+. .+|.    +..+++|++|++++|.+. .+|..    .++|+.|++++|.+..+         |..   .
T Consensus       219 ~L~l~~n~l~-~lp~----~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~N~l~~l---------~~~---~  276 (454)
T 1jl5_A          219 SIVAGNNILE-ELPE----LQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTDL---------PEL---P  276 (454)
T ss_dssp             EEECCSSCCS-SCCC----CTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSCC---------CCC---C
T ss_pred             EEECcCCcCC-cccc----cCCCCCCCEEECCCCcCC-ccccc----ccccCEEECCCCccccc---------Ccc---c
Confidence            6666666665 4443    455666667777666665 34431    35666666666655432         211   2


Q ss_pred             CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCC
Q 036984          311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPM  390 (603)
Q Consensus       311 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (603)
                      ++|++|++++|.+++...    ..++|+.|++++|++++. +                                      
T Consensus       277 ~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~--------------------------------------  313 (454)
T 1jl5_A          277 QSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-C--------------------------------------  313 (454)
T ss_dssp             TTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-C--------------------------------------
T ss_pred             CcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-c--------------------------------------
Confidence            566667777666664211    114666777776666520 0                                      


Q ss_pred             CcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcc--cCC-Cc
Q 036984          391 GKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG--KIP-QL  467 (603)
Q Consensus       391 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~-~~  467 (603)
                            ..+++|+.|++++|++++ +|..   +++|++|++++|+++ .+|.   .+++|++|++++|++++  .+| .+
T Consensus       314 ------~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l  379 (454)
T 1jl5_A          314 ------DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESV  379 (454)
T ss_dssp             ------CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             ------CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHH
Confidence                  012356666666666664 3332   356666666666666 3444   35666666666666665  444 44


Q ss_pred             cCC-------------CCCCceecccCcccc--cCCCcccccCCCCcccccCCcCCC
Q 036984          468 IVL-------------TTLAVFRVAYNNLSG--KIPDRVAQFSTFEEDSYEGNPFLY  509 (603)
Q Consensus       468 ~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~l~~l~~~~l~gn~~~c  509 (603)
                      ..+             ++|+.|++++|++++  .+|..      ++.+.+.+|.+.|
T Consensus       380 ~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~  430 (454)
T 1jl5_A          380 EDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVD  430 (454)
T ss_dssp             CEEECCC--------------------------------------------------
T ss_pred             HhhhhcccccccccccCcCCEEECCCCcCCccccchhh------HhheeCcCcccCC
Confidence            444             789999999999987  66654      3445566665544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.2e-32  Score=273.69  Aligned_cols=82  Identities=21%  Similarity=0.289  Sum_probs=37.2

Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceec
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRV  478 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l  478 (603)
                      +++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..| +..+++|++|++
T Consensus       264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l  340 (347)
T 4fmz_A          264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADF  340 (347)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESS
T ss_pred             CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeeh
Confidence            33444444444444422  124444445555555555544444444445555555555555443333 444455555555


Q ss_pred             ccCcc
Q 036984          479 AYNNL  483 (603)
Q Consensus       479 ~~N~l  483 (603)
                      ++|++
T Consensus       341 ~~N~i  345 (347)
T 4fmz_A          341 ANQVI  345 (347)
T ss_dssp             SCC--
T ss_pred             hhhcc
Confidence            55544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.4e-32  Score=277.19  Aligned_cols=303  Identities=25%  Similarity=0.373  Sum_probs=199.5

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE  109 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (603)
                      +++|++|+++++.+...    ..+..+++|++|++++|.++++++  +. +++|++|++++|.++..  ..+..+++|++
T Consensus        43 l~~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~  114 (347)
T 4fmz_A           43 LESITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE  114 (347)
T ss_dssp             HTTCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             cccccEEEEeCCccccc----hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence            45555555555555431    124455555555555555555444  33 55555555555555442  23555555555


Q ss_pred             EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984          110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY  189 (603)
Q Consensus       110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~  189 (603)
                      |++++|.+++..+  +.++++|++|++++|.....++  .+..+++|++|++++|                         
T Consensus       115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~-------------------------  165 (347)
T 4fmz_A          115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTES-------------------------  165 (347)
T ss_dssp             EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSS-------------------------
T ss_pred             EECcCCcccCchh--hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCC-------------------------
Confidence            5555555543222  4555555555555553332222  2444455555554444                         


Q ss_pred             eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccccc
Q 036984          190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGH  269 (603)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~  269 (603)
                                              .+....+  +..+++|+.|++++|.+.+..+     +..+++|+.+++++|.+. .
T Consensus       166 ------------------------~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~-~  213 (347)
T 4fmz_A          166 ------------------------KVKDVTP--IANLTDLYSLSLNYNQIEDISP-----LASLTSLHYFTAYVNQIT-D  213 (347)
T ss_dssp             ------------------------CCCCCGG--GGGCTTCSEEECTTSCCCCCGG-----GGGCTTCCEEECCSSCCC-C
T ss_pred             ------------------------CcCCchh--hccCCCCCEEEccCCccccccc-----ccCCCccceeecccCCCC-C
Confidence                                    3333222  6677889999999998864332     567889999999999887 4


Q ss_pred             CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984          270 IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG  349 (603)
Q Consensus       270 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  349 (603)
                      ++.  +..+++|++|++++|.+.++.         . +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++
T Consensus       214 ~~~--~~~~~~L~~L~l~~n~l~~~~---------~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~  279 (347)
T 4fmz_A          214 ITP--VANMTRLNSLKIGNNKITDLS---------P-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD  279 (347)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCCCG---------G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             Cch--hhcCCcCCEEEccCCccCCCc---------c-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC
Confidence            443  445889999999988876543         1 66788999999999998864  468888999999999998863


Q ss_pred             CCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEE
Q 036984          350 HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL  429 (603)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  429 (603)
                      .                                           ..+..+++|+.|++++|.+++..+..+..+++|++|
T Consensus       280 ~-------------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          280 I-------------------------------------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             C-------------------------------------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             C-------------------------------------------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence            1                                           224557889999999999988888888999999999


Q ss_pred             ecccccccccCCcCCcCCCCCCEEeCCCCcCc
Q 036984          430 NLSHNNLTGTIPITFSNLKQIESLDLSYNLLH  461 (603)
Q Consensus       430 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  461 (603)
                      ++++|++++..|  +..+++|++||+++|+++
T Consensus       317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          317 FLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999986655  778899999999999876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.5e-32  Score=296.74  Aligned_cols=311  Identities=22%  Similarity=0.253  Sum_probs=255.3

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE  109 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (603)
                      +.+++.+++++|.+..  +.+..|.++++|++|++++|.++++++..|. +++|++|++++|.+.+..|..|+++++|++
T Consensus        50 l~~l~~l~l~~~~l~~--lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCCC--cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            6889999999998875  2345678899999999999999999998888 999999999999999988888999999999


Q ss_pred             EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984          110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY  189 (603)
Q Consensus       110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~  189 (603)
                      |+|++|.+++..+..|+++++|++|++++|.+++..+. .+..+++|++|++++|.++.. +                  
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~-~------------------  187 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV-D------------------  187 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBC-C------------------
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCc-C------------------
Confidence            99999999977777789999999999999999864444 789999999999999976521 1                  


Q ss_pred             eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccccc
Q 036984          190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGH  269 (603)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~  269 (603)
                                                       +..+++|+.|++++|.+.+        +...++|+.|++++|.+. .
T Consensus       188 ---------------------------------~~~l~~L~~L~l~~n~l~~--------l~~~~~L~~L~ls~n~l~-~  225 (597)
T 3oja_B          188 ---------------------------------LSLIPSLFHANVSYNLLST--------LAIPIAVEELDASHNSIN-V  225 (597)
T ss_dssp             ---------------------------------GGGCTTCSEEECCSSCCSE--------EECCTTCSEEECCSSCCC-E
T ss_pred             ---------------------------------hhhhhhhhhhhcccCcccc--------ccCCchhheeeccCCccc-c
Confidence                                             2234556677777776653        233467888888888887 4


Q ss_pred             CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984          270 IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG  349 (603)
Q Consensus       270 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  349 (603)
                      ++...   .++|+.|++++|.+.+          +.+++.+++|++|++++|.+++..|..+..+++|+.|++++|.+++
T Consensus       226 ~~~~~---~~~L~~L~L~~n~l~~----------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  292 (597)
T 3oja_B          226 VRGPV---NVELTILKLQHNNLTD----------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  292 (597)
T ss_dssp             EECSC---CSCCCEEECCSSCCCC----------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred             ccccc---CCCCCEEECCCCCCCC----------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence            55433   3588998888887653          3567778999999999999999889999999999999999999974


Q ss_pred             CCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEE
Q 036984          350 HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL  429 (603)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  429 (603)
                       +|.                                         ....+++|+.|+|++|.++ .+|..+..+++|+.|
T Consensus       293 -l~~-----------------------------------------~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L  329 (597)
T 3oja_B          293 -LNL-----------------------------------------YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL  329 (597)
T ss_dssp             -EEC-----------------------------------------SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred             -CCc-----------------------------------------ccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence             221                                         1133678999999999999 677778899999999


Q ss_pred             ecccccccccCCcCCcCCCCCCEEeCCCCcCcccC
Q 036984          430 NLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI  464 (603)
Q Consensus       430 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  464 (603)
                      +|++|.+++. |  +..+++|+.|++++|++.+..
T Consensus       330 ~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          330 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred             ECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence            9999999854 3  667889999999999998653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8.8e-33  Score=273.61  Aligned_cols=257  Identities=29%  Similarity=0.463  Sum_probs=232.0

Q ss_pred             cccEEeccCCCCCC--CcChhhccCCCCCEEEcCC-CcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCC
Q 036984          204 QLTSISLSGYRDDG--TFPKFLYHQHDLKNADLSH-LNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPG  280 (603)
Q Consensus       204 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~  280 (603)
                      +++.|+++++.+.+  .+|..+..+++|+.|++++ |.+.+.+|..   +..+++|++|++++|.+.+.+|..+.. +++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~  126 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA---IAKLTQLHYLYITHTNVSGAIPDFLSQ-IKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG---GGGCTTCSEEEEEEECCEEECCGGGGG-CTT
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh---HhcCCCCCEEECcCCeeCCcCCHHHhC-CCC
Confidence            79999999999998  8899999999999999995 9999888876   788999999999999998788876655 999


Q ss_pred             CcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCC-CCCEEecCCCcCccCCChhhhccc
Q 036984          281 LMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLK-EVRLIDLSHNNLSGHIPFCLVNTA  359 (603)
Q Consensus       281 L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~  359 (603)
                      |++|++++|.+.        +.+|..++.+++|++|++++|.+++.+|..+..++ +|+.|++++|++++.+|..+..  
T Consensus       127 L~~L~Ls~N~l~--------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~--  196 (313)
T 1ogq_A          127 LVTLDFSYNALS--------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--  196 (313)
T ss_dssp             CCEEECCSSEEE--------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--
T ss_pred             CCEEeCCCCccC--------CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--
Confidence            999998887664        46788889999999999999999999999999998 9999999999998777755443  


Q ss_pred             ccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccccccccc
Q 036984          360 LSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT  439 (603)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  439 (603)
                                                             ++ |+.|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus       197 ---------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          197 ---------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             ---------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             ---------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence                                                   34 99999999999999999999999999999999999976


Q ss_pred             CCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCCCCCC
Q 036984          440 IPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSC  517 (603)
Q Consensus       440 ~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~~~~C  517 (603)
                      .|. +..+++|++|++++|++++.+| .+..+++|++|++++|++++.+|.. ..++.++.+++.+||++|+.|.. .|
T Consensus       237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCC-CC
Confidence            665 8889999999999999998888 7899999999999999999999986 88999999999999999987765 46

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.1e-30  Score=257.93  Aligned_cols=289  Identities=20%  Similarity=0.202  Sum_probs=173.7

Q ss_pred             CCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcc
Q 036984           58 VHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVS  137 (603)
Q Consensus        58 ~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  137 (603)
                      .+++.++++++.++.++...  .+++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|+++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            36778888877777766544  4677778888888777666677778888888888887776667777777888888887


Q ss_pred             cCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCC
Q 036984          138 YNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDG  217 (603)
Q Consensus       138 ~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  217 (603)
                      +|.++ .+|...+   ++|++|++++|.+.                                                 .
T Consensus       109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~-------------------------------------------------~  135 (330)
T 1xku_A          109 KNQLK-ELPEKMP---KTLQELRVHENEIT-------------------------------------------------K  135 (330)
T ss_dssp             SSCCS-BCCSSCC---TTCCEEECCSSCCC-------------------------------------------------B
T ss_pred             CCcCC-ccChhhc---ccccEEECCCCccc-------------------------------------------------c
Confidence            77776 4554221   45566666555443                                                 2


Q ss_pred             CcChhhccCCCCCEEEcCCCcccC--CCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCccccc
Q 036984          218 TFPKFLYHQHDLKNADLSHLNLSG--EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS  295 (603)
Q Consensus       218 ~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~  295 (603)
                      ..+..+..+++|+.|++++|.+..  ..+..   +..+++|++|++++|.+. .+|...                     
T Consensus       136 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~~l~~L~~L~l~~n~l~-~l~~~~---------------------  190 (330)
T 1xku_A          136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGA---FQGMKKLSYIRIADTNIT-TIPQGL---------------------  190 (330)
T ss_dssp             BCHHHHTTCTTCCEEECCSSCCCGGGBCTTG---GGGCTTCCEEECCSSCCC-SCCSSC---------------------
T ss_pred             cCHhHhcCCccccEEECCCCcCCccCcChhh---ccCCCCcCEEECCCCccc-cCCccc---------------------
Confidence            223344555555666666555532  22222   334444555555544444 333221                     


Q ss_pred             CCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCC
Q 036984          296 YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHA  375 (603)
Q Consensus       296 ~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (603)
                                    .++|++|++++|.+++..+..+..+++|+.|++++|.+++..+.                      
T Consensus       191 --------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------------------  234 (330)
T 1xku_A          191 --------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG----------------------  234 (330)
T ss_dssp             --------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT----------------------
T ss_pred             --------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh----------------------
Confidence                          14566666666666655556666666666666666666532221                      


Q ss_pred             CCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCC------CC
Q 036984          376 SAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNL------KQ  449 (603)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~  449 (603)
                                         .+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|...      ..
T Consensus       235 -------------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~  294 (330)
T 1xku_A          235 -------------------SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS  294 (330)
T ss_dssp             -------------------TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred             -------------------hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence                               2233456666666666666 555566677777777777777776555555432      56


Q ss_pred             CCEEeCCCCcCcc--cCC-CccCCCCCCceecccCc
Q 036984          450 IESLDLSYNLLHG--KIP-QLIVLTTLAVFRVAYNN  482 (603)
Q Consensus       450 L~~L~Ls~N~l~~--~~~-~~~~l~~L~~L~l~~N~  482 (603)
                      ++.|++++|++..  ..| .+..+.+++.+++++|+
T Consensus       295 l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccceEeecCcccccccCccccccccceeEEEecccC
Confidence            7777777777753  222 56667777777777663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.5e-30  Score=260.39  Aligned_cols=287  Identities=20%  Similarity=0.212  Sum_probs=161.6

Q ss_pred             CCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEccc
Q 036984           59 HLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY  138 (603)
Q Consensus        59 ~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  138 (603)
                      +++.++++++.++.++...  .++|++|++++|.+.+..+..|.++++|++|++++|.+++..|.+|+++++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            5777777777777666544  35777777777777776666777777777777777777766677777777777777777


Q ss_pred             CcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCC
Q 036984          139 NQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGT  218 (603)
Q Consensus       139 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  218 (603)
                      |.++ .+|...+   ++|++|++++|.+.                                                 ..
T Consensus       112 n~l~-~l~~~~~---~~L~~L~l~~n~i~-------------------------------------------------~~  138 (332)
T 2ft3_A          112 NHLV-EIPPNLP---SSLVELRIHDNRIR-------------------------------------------------KV  138 (332)
T ss_dssp             SCCC-SCCSSCC---TTCCEEECCSSCCC-------------------------------------------------CC
T ss_pred             CcCC-ccCcccc---ccCCEEECCCCccC-------------------------------------------------cc
Confidence            7776 4554221   45555555555443                                                 22


Q ss_pred             cChhhccCCCCCEEEcCCCcccC--CCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccC
Q 036984          219 FPKFLYHQHDLKNADLSHLNLSG--EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSY  296 (603)
Q Consensus       219 ~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  296 (603)
                      .+..+..+++|+.|++++|.+..  ..+..   +..+ +|+.|++++|.++ .+|..++   ++|+              
T Consensus       139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~--------------  196 (332)
T 2ft3_A          139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGA---FDGL-KLNYLRISEAKLT-GIPKDLP---ETLN--------------  196 (332)
T ss_dssp             CSGGGSSCSSCCEEECCSCCCBGGGSCTTS---SCSC-CCSCCBCCSSBCS-SCCSSSC---SSCS--------------
T ss_pred             CHhHhCCCccCCEEECCCCccccCCCCccc---ccCC-ccCEEECcCCCCC-ccCcccc---CCCC--------------
Confidence            23345555666666666666542  33332   2333 5666666666655 3443322   3444              


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCC
Q 036984          297 NRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHAS  376 (603)
Q Consensus       297 ~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (603)
                                        +|++++|.+++..+..+..+++|+.|++++|++++..+.                       
T Consensus       197 ------------------~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-----------------------  235 (332)
T 2ft3_A          197 ------------------ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG-----------------------  235 (332)
T ss_dssp             ------------------CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT-----------------------
T ss_pred             ------------------EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh-----------------------
Confidence                              444444444444444444555555555555554422111                       


Q ss_pred             CCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCC------CCC
Q 036984          377 APALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNL------KQI  450 (603)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L  450 (603)
                                        .+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.+.      ..|
T Consensus       236 ------------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l  296 (332)
T 2ft3_A          236 ------------------SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY  296 (332)
T ss_dssp             ------------------GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCB
T ss_pred             ------------------HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccc
Confidence                              1222445555555555555 444455556666666666666665544444432      456


Q ss_pred             CEEeCCCCcCc--ccCC-CccCCCCCCceecccCc
Q 036984          451 ESLDLSYNLLH--GKIP-QLIVLTTLAVFRVAYNN  482 (603)
Q Consensus       451 ~~L~Ls~N~l~--~~~~-~~~~l~~L~~L~l~~N~  482 (603)
                      +.|++++|++.  +..| .+..+++|+.+++++|+
T Consensus       297 ~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cceEeecCcccccccCcccccccchhhhhhccccc
Confidence            66777777665  3333 56666677777776663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.3e-29  Score=253.34  Aligned_cols=291  Identities=18%  Similarity=0.210  Sum_probs=210.8

Q ss_pred             CCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEE
Q 036984           81 TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELI  160 (603)
Q Consensus        81 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~  160 (603)
                      .+++.++++++.++. +|..+.  ++|++|++++|++++..+..|+++++|++|++++|.+++..|. .+..+++|++|+
T Consensus        31 c~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEE
T ss_pred             CCCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEE
Confidence            367777777777765 444332  5677777777777766666677777777777777777643343 566666666666


Q ss_pred             ccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCccc
Q 036984          161 LSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLS  240 (603)
Q Consensus       161 l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~  240 (603)
                      +++|.++                                                                         
T Consensus       107 Ls~n~l~-------------------------------------------------------------------------  113 (330)
T 1xku_A          107 LSKNQLK-------------------------------------------------------------------------  113 (330)
T ss_dssp             CCSSCCS-------------------------------------------------------------------------
T ss_pred             CCCCcCC-------------------------------------------------------------------------
Confidence            6666443                                                                         


Q ss_pred             CCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccC
Q 036984          241 GEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLAN  320 (603)
Q Consensus       241 ~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~  320 (603)
                       .+|..+     .++|++|++++|.+. .++...+..+++|+.|++++|.+....      ..+..+..+++|++|++++
T Consensus       114 -~l~~~~-----~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          114 -ELPEKM-----PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG------IENGAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             -BCCSSC-----CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGG------BCTTGGGGCTTCCEEECCS
T ss_pred             -ccChhh-----cccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccC------cChhhccCCCCcCEEECCC
Confidence             122211     146777777777777 566666666888888888887765422      4456677789999999999


Q ss_pred             CcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcc
Q 036984          321 NYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILT  400 (603)
Q Consensus       321 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  400 (603)
                      |.++. +|..+.  ++|+.|++++|++++..|..                                         +..++
T Consensus       181 n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~-----------------------------------------~~~l~  216 (330)
T 1xku_A          181 TNITT-IPQGLP--PSLTELHLDGNKITKVDAAS-----------------------------------------LKGLN  216 (330)
T ss_dssp             SCCCS-CCSSCC--TTCSEEECTTSCCCEECTGG-----------------------------------------GTTCT
T ss_pred             Ccccc-CCcccc--ccCCEEECCCCcCCccCHHH-----------------------------------------hcCCC
Confidence            99985 443332  78999999999997544433                                         34477


Q ss_pred             cceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccC------CCCC
Q 036984          401 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIV------LTTL  473 (603)
Q Consensus       401 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~------l~~L  473 (603)
                      +|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+ .+..      .+++
T Consensus       217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l  295 (330)
T 1xku_A          217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY  295 (330)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred             CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence            8999999999999888878999999999999999999 788889999999999999999996555 4432      4788


Q ss_pred             CceecccCcccc--cCCCcccccCCCCcccccCCc
Q 036984          474 AVFRVAYNNLSG--KIPDRVAQFSTFEEDSYEGNP  506 (603)
Q Consensus       474 ~~L~l~~N~l~~--~~p~~~~~l~~l~~~~l~gn~  506 (603)
                      +.+++++|++..  ..|..+..+..++.+++++|.
T Consensus       296 ~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cceEeecCcccccccCccccccccceeEEEecccC
Confidence            899999999864  455667777888888888873

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.3e-30  Score=256.40  Aligned_cols=289  Identities=18%  Similarity=0.244  Sum_probs=210.9

Q ss_pred             CCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEc
Q 036984           82 SLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELIL  161 (603)
Q Consensus        82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l  161 (603)
                      +++.++++++.+.. +|..+  .++|++|++++|.+++..+..|.++++|++|++++|.+++..+. .+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEEC
Confidence            67777887777765 44444  25777777777777766666777777777777777777643333 5666666666666


Q ss_pred             cCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccC
Q 036984          162 SNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSG  241 (603)
Q Consensus       162 ~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~  241 (603)
                      ++|.+.                                                                          
T Consensus       110 ~~n~l~--------------------------------------------------------------------------  115 (332)
T 2ft3_A          110 SKNHLV--------------------------------------------------------------------------  115 (332)
T ss_dssp             CSSCCC--------------------------------------------------------------------------
T ss_pred             CCCcCC--------------------------------------------------------------------------
Confidence            666543                                                                          


Q ss_pred             CCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCC
Q 036984          242 EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANN  321 (603)
Q Consensus       242 ~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n  321 (603)
                      .+|..   +  .++|++|++++|.+. .++...+..+++|+.|++++|.+.+..      ..+..+..+ +|++|++++|
T Consensus       116 ~l~~~---~--~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          116 EIPPN---L--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG------FEPGAFDGL-KLNYLRISEA  182 (332)
T ss_dssp             SCCSS---C--CTTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGG------SCTTSSCSC-CCSCCBCCSS
T ss_pred             ccCcc---c--cccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCC------CCcccccCC-ccCEEECcCC
Confidence            12211   1  146667777777766 555555555777777777777664322      334555556 8999999999


Q ss_pred             cCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhccc
Q 036984          322 YIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTS  401 (603)
Q Consensus       322 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  401 (603)
                      .+++ +|..+.  ++|+.|++++|.+++..+.                                         .+..+++
T Consensus       183 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~-----------------------------------------~l~~l~~  218 (332)
T 2ft3_A          183 KLTG-IPKDLP--ETLNELHLDHNKIQAIELE-----------------------------------------DLLRYSK  218 (332)
T ss_dssp             BCSS-CCSSSC--SSCSCCBCCSSCCCCCCTT-----------------------------------------SSTTCTT
T ss_pred             CCCc-cCcccc--CCCCEEECCCCcCCccCHH-----------------------------------------HhcCCCC
Confidence            9986 444433  7899999999999854332                                         2344779


Q ss_pred             ceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccC------CCCCC
Q 036984          402 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIV------LTTLA  474 (603)
Q Consensus       402 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~------l~~L~  474 (603)
                      |+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+ .+..      .++|+
T Consensus       219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~  297 (332)
T 2ft3_A          219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN  297 (332)
T ss_dssp             CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS
T ss_pred             CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccccc
Confidence            999999999999888888999999999999999999 788889999999999999999996655 4443      46799


Q ss_pred             ceecccCccc--ccCCCcccccCCCCcccccCCc
Q 036984          475 VFRVAYNNLS--GKIPDRVAQFSTFEEDSYEGNP  506 (603)
Q Consensus       475 ~L~l~~N~l~--~~~p~~~~~l~~l~~~~l~gn~  506 (603)
                      .|++++|++.  +..|..+..++.++.+++++|.
T Consensus       298 ~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             EEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ceEeecCcccccccCcccccccchhhhhhccccc
Confidence            9999999998  5677778889999999999875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.6e-34  Score=300.68  Aligned_cols=159  Identities=21%  Similarity=0.238  Sum_probs=73.2

Q ss_pred             CCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCC--CCccccCCCCCCCEEEccCCcCCCCccCccc--C
Q 036984            5 KNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNT--ILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ--T   80 (603)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~   80 (603)
                      ++|++|+++++.+.... +..+. ..+++|++|++++|.++...  ..+..+..+++|++|++++|.+.+.....+.  +
T Consensus         3 ~~l~~L~Ls~~~l~~~~-~~~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDAR-WAELL-PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESCCCCHHH-HHHHH-HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             ccceehhhhhcccCchh-HHHHH-hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            34566666655543211 22222 22556666666666554211  1123445556666666666655543322221  2


Q ss_pred             C----CCCEEEccCCCCCc----CCchhhcCCCCCcEEeccCCCCccCcCcc-----CCCCCCCCEEEcccCcCCccC--
Q 036984           81 T----SLQELNVASNKLTR----NFPLGLCELVLLRELYIDNNDLSGSLPLC-----LTNLTSLQVLDVSYNQLTESI--  145 (603)
Q Consensus        81 ~----~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-----~~~l~~L~~L~L~~n~i~~~~--  145 (603)
                      +    +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..     +...++|++|++++|.+++..  
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            2    45555665555553    22445555555555555555554322221     112344555555555554311  


Q ss_pred             --CcccccCCCCCcEEEccCcee
Q 036984          146 --SSSPLMLLTSIEELILSNNHF  166 (603)
Q Consensus       146 --~~~~~~~l~~L~~L~l~~n~~  166 (603)
                        +. .+..+++|++|++++|.+
T Consensus       161 ~l~~-~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          161 PLAS-VLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHH-HHHHCTTCCEEECCSSBC
T ss_pred             HHHH-HHhhCCCCCEEECcCCCc
Confidence              11 233344455555554443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.3e-33  Score=296.41  Aligned_cols=136  Identities=24%  Similarity=0.218  Sum_probs=104.6

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCc----cCccc-CCCCCEEEccCCCCCcCCchhh-cCC
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSL----LGAWQ-TTSLQELNVASNKLTRNFPLGL-CEL  104 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~-~~~L~~L~Ls~n~l~~~~~~~~-~~l  104 (603)
                      +++|++||+++|+++... ....+..+++|++|++++|.+++..    +..+. +++|++|++++|.+.+..+..+ ..+
T Consensus         2 ~~~l~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             CEEEEEEEEESCCCCHHH-HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CccceehhhhhcccCchh-HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            568999999999987532 2233778999999999999988543    33344 7999999999999876544433 345


Q ss_pred             C----CCcEEeccCCCCcc----CcCccCCCCCCCCEEEcccCcCCccCCc----ccccCCCCCcEEEccCceee
Q 036984          105 V----LLRELYIDNNDLSG----SLPLCLTNLTSLQVLDVSYNQLTESISS----SPLMLLTSIEELILSNNHFQ  167 (603)
Q Consensus       105 ~----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~~l~~L~~L~l~~n~~~  167 (603)
                      +    +|++|++++|.++.    .++..+.++++|++|++++|.+++..+.    ......++|++|++++|.++
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  155 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  155 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence            5    69999999999984    4578899999999999999998743222    11233568999999999876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=5.1e-30  Score=253.72  Aligned_cols=249  Identities=28%  Similarity=0.446  Sum_probs=156.9

Q ss_pred             CCCCEEEccCCCCCc--CCchhhcCCCCCcEEeccC-CCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCc
Q 036984           81 TSLQELNVASNKLTR--NFPLGLCELVLLRELYIDN-NDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIE  157 (603)
Q Consensus        81 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~  157 (603)
                      .++++|++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|. .+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCCCC
Confidence            567888888888877  6777888888888888884 777777788888888888888888888766665 667777777


Q ss_pred             EEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCC
Q 036984          158 ELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHL  237 (603)
Q Consensus       158 ~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n  237 (603)
                      +|++++|.+.+                                                 ..|..               
T Consensus       129 ~L~Ls~N~l~~-------------------------------------------------~~p~~---------------  144 (313)
T 1ogq_A          129 TLDFSYNALSG-------------------------------------------------TLPPS---------------  144 (313)
T ss_dssp             EEECCSSEEES-------------------------------------------------CCCGG---------------
T ss_pred             EEeCCCCccCC-------------------------------------------------cCChH---------------
Confidence            77777766541                                                 12223               


Q ss_pred             cccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCC-CCcEEecCCCCcccccCCcCcccCCccccCCCCCCEE
Q 036984          238 NLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLP-GLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYL  316 (603)
Q Consensus       238 ~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L  316 (603)
                                  +..+++|++|++++|.+++.+|..+.. ++ +|+.|++++|.+.        +.+|..+..++ |++|
T Consensus       145 ------------~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N~l~--------~~~~~~~~~l~-L~~L  202 (313)
T 1ogq_A          145 ------------ISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLT--------GKIPPTFANLN-LAFV  202 (313)
T ss_dssp             ------------GGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEE--------EECCGGGGGCC-CSEE
T ss_pred             ------------HhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECcCCeee--------ccCChHHhCCc-ccEE
Confidence                        334455555555555555445544443 32 4555444444332        23344444444 6666


Q ss_pred             eccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhh
Q 036984          317 LLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETV  396 (603)
Q Consensus       317 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (603)
                      ++++|.+++..+..+..+++|+.|++++|++++.                                              
T Consensus       203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------------------------------  236 (313)
T 1ogq_A          203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD----------------------------------------------  236 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB----------------------------------------------
T ss_pred             ECcCCcccCcCCHHHhcCCCCCEEECCCCceeee----------------------------------------------
Confidence            6666666666666666666666666666666432                                              


Q ss_pred             hhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCce
Q 036984          397 QILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVF  476 (603)
Q Consensus       397 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L  476 (603)
                                         ++. +..+++|++|++++|++++.+|..|.++++|++|++++|++++.+|....+++|+.+
T Consensus       237 -------------------~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l  296 (313)
T 1ogq_A          237 -------------------LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS  296 (313)
T ss_dssp             -------------------GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred             -------------------cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChH
Confidence                               222 344556666666666666666666666666666666666666666654566666666


Q ss_pred             ecccCc
Q 036984          477 RVAYNN  482 (603)
Q Consensus       477 ~l~~N~  482 (603)
                      ++++|+
T Consensus       297 ~l~~N~  302 (313)
T 1ogq_A          297 AYANNK  302 (313)
T ss_dssp             GTCSSS
T ss_pred             HhcCCC
Confidence            666666

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.5e-28  Score=244.56  Aligned_cols=109  Identities=26%  Similarity=0.246  Sum_probs=76.3

Q ss_pred             CCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEE
Q 036984           56 QLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLD  135 (603)
Q Consensus        56 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  135 (603)
                      .|+.....+++++.++.+|...  .++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|+
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCeEeeCCCCCcccccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            4455556777777777776654  35777777777777776665777777777777777777766667777777777777


Q ss_pred             cccCcCCccCCcccccCCCCCcEEEccCceee
Q 036984          136 VSYNQLTESISSSPLMLLTSIEELILSNNHFQ  167 (603)
Q Consensus       136 L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~  167 (603)
                      +++|.++ .++...+..+++|++|++++|+++
T Consensus       107 Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~  137 (353)
T 2z80_A          107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK  137 (353)
T ss_dssp             CCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS
T ss_pred             CCCCcCC-cCCHhHhCCCccCCEEECCCCCCc
Confidence            7777776 355534666677777777666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=8.7e-27  Score=242.35  Aligned_cols=250  Identities=21%  Similarity=0.211  Sum_probs=176.5

Q ss_pred             cEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEe
Q 036984          206 TSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN  285 (603)
Q Consensus       206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~  285 (603)
                      ..++..+..++. +|..+.  ++++.|++++|.+.+..+..   +..+++|++|++++|.+. .++...+..+++|++|+
T Consensus        46 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~---~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           46 SKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNS---FKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             CEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTT---TSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred             CEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHH---hhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence            345555544432 333332  46777888888777665554   566778888888888877 55555566677888888


Q ss_pred             cCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhccccccccc
Q 036984          286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYY  365 (603)
Q Consensus       286 L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  365 (603)
                      +++|.+..+.        +..+..+++|++|++++|.+....+..|..+++|+.|++++|+..+.++             
T Consensus       119 L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-------------  177 (440)
T 3zyj_A          119 LFDNRLTTIP--------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-------------  177 (440)
T ss_dssp             CCSSCCSSCC--------TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-------------
T ss_pred             CCCCcCCeeC--------HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-------------
Confidence            7777765433        3345567788888888888877777777788888888888754432222             


Q ss_pred             CCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCc
Q 036984          366 DAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFS  445 (603)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  445 (603)
                                                 ...+..+++|+.|++++|.++ .+| .+..+++|++|+|++|++++..|..|.
T Consensus       178 ---------------------------~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~  228 (440)
T 3zyj_A          178 ---------------------------EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ  228 (440)
T ss_dssp             ---------------------------TTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred             ---------------------------cchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhc
Confidence                                       123445677888888888887 444 367778888888888888877777888


Q ss_pred             CCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984          446 NLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       446 ~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~  512 (603)
                      ++++|++|++++|++++..+ .+..+++|+.|++++|++++..+..+..++.++.+++++|||.|+|.
T Consensus       229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            88888888888888886666 67778888888888888887666777777888888888888888553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=5.1e-27  Score=231.98  Aligned_cols=249  Identities=18%  Similarity=0.168  Sum_probs=187.8

Q ss_pred             cEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccc--cCChhhhhcCCCCcE
Q 036984          206 TSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQG--HIPVEIGTYLPGLMH  283 (603)
Q Consensus       206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~--~~~~~~~~~l~~L~~  283 (603)
                      +.++.+++.++. +|..+  .++++.|++++|.+....+..   +..+++|++|++++|.+..  ..+..... +++|++
T Consensus        10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~   82 (306)
T 2z66_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGV---FDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKY   82 (306)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTT---TTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCE
T ss_pred             CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhH---hhccccCCEEECCCCccCcccCccccccc-ccccCE
Confidence            456666665543 23322  257888888888887433333   5678888888888888762  12444444 788888


Q ss_pred             EecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCC-ccccCCCCCCEEecCCCcCccCCChhhhcccccc
Q 036984          284 LNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSE  362 (603)
Q Consensus       284 L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  362 (603)
                      |++++|.+..         +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+.         
T Consensus        83 L~Ls~n~i~~---------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------  144 (306)
T 2z66_A           83 LDLSFNGVIT---------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---------  144 (306)
T ss_dssp             EECCSCSEEE---------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT---------
T ss_pred             EECCCCcccc---------ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh---------
Confidence            8888887753         34556778888899998888886654 5788888899999988888754432         


Q ss_pred             cccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcc-cCchhccCcCcCCEEecccccccccCC
Q 036984          363 GYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG-EIPTQIGYLTRIRALNLSHNNLTGTIP  441 (603)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~  441 (603)
                                                      .+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|
T Consensus       145 --------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  192 (306)
T 2z66_A          145 --------------------------------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP  192 (306)
T ss_dssp             --------------------------------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             --------------------------------hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH
Confidence                                            23346788889999888876 467788888889999999999888778


Q ss_pred             cCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccC-CCCcccccCCcCCCCC
Q 036984          442 ITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFS-TFEEDSYEGNPFLYGQ  511 (603)
Q Consensus       442 ~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~l~~~~l~gn~~~c~~  511 (603)
                      ..|.++++|++|++++|++++..+ .+..+++|++|++++|++++..|..+..++ .++.+++++|++.|.+
T Consensus       193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            888888899999999998886666 677888899999999999888888888874 7888899999988843

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.7e-26  Score=241.07  Aligned_cols=232  Identities=20%  Similarity=0.187  Sum_probs=144.6

Q ss_pred             CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcc
Q 036984          227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW  306 (603)
Q Consensus       227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~  306 (603)
                      ++++.|++++|.+.+..+..   +..+++|+.|++++|.+. .++...+..+++|++|++++|.+..+.        +..
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~---~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~  142 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADT---FRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIP--------SGA  142 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTT---TTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCC--------TTT
T ss_pred             CCccEEECcCCcCceECHHH---cCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccC--------hhh
Confidence            45666666666666555554   455666666666666666 344444444666666666666554332        333


Q ss_pred             ccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecC
Q 036984          307 IDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPN  386 (603)
Q Consensus       307 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (603)
                      ++.+++|++|++++|.++...+..|..+++|+.|++++|...+.++                                  
T Consensus       143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~----------------------------------  188 (452)
T 3zyi_A          143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS----------------------------------  188 (452)
T ss_dssp             SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC----------------------------------
T ss_pred             hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC----------------------------------
Confidence            4456667777777776665555566666777777776644332221                                  


Q ss_pred             CCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-
Q 036984          387 GSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-  465 (603)
Q Consensus       387 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-  465 (603)
                            ...+..+++|+.|++++|++++. | .+..+++|++|+|++|.+++..|..|.++++|+.|++++|++++..+ 
T Consensus       189 ------~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  260 (452)
T 3zyi_A          189 ------EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN  260 (452)
T ss_dssp             ------TTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred             ------hhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence                  12234456677777777776633 3 35666677777777777776666667777777777777777766555 


Q ss_pred             CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984          466 QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       466 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~  512 (603)
                      .+..+++|+.|++++|++++..+..+..++.++.+++++|||.|+|.
T Consensus       261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            56667777777777777776555666666777777777777777544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=5.5e-30  Score=277.67  Aligned_cols=381  Identities=15%  Similarity=0.130  Sum_probs=225.1

Q ss_pred             CCCCCCEEEccCCcCCCCccCccc--CCC-CCEEEccCCC-CCc-CCchhhcCCCCCcEEeccCCCCccC----cCccCC
Q 036984           56 QLVHLQELYIRDNDLRDSLLGAWQ--TTS-LQELNVASNK-LTR-NFPLGLCELVLLRELYIDNNDLSGS----LPLCLT  126 (603)
Q Consensus        56 ~l~~L~~L~Ls~n~i~~~~~~~~~--~~~-L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~  126 (603)
                      .+++|++|+|++|.+++.....+.  +++ |++|++++|. +.. ..+....++++|++|+|++|.+++.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            455555555555544433333332  222 5555555553 110 0111122445555555555554332    111223


Q ss_pred             CCCCCCEEEcccCcCC----ccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeecccee---eeccCCCCC
Q 036984          127 NLTSLQVLDVSYNQLT----ESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYL---ETESHYNSL  199 (603)
Q Consensus       127 ~l~~L~~L~L~~n~i~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~---~~~~~~~~~  199 (603)
                      ++++|++|++++|.+.    +.++. .+..+++|++|++++|.+....  ..+.++++|+.++.....   ........+
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILELV--GFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGGGH--HHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHHHH--HHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            4455555555555543    11111 2334455555555555443211  223333344433333100   011222334


Q ss_pred             CCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCC
Q 036984          200 TPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLP  279 (603)
Q Consensus       200 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~  279 (603)
                      ....+|+.++++++. ...++..+..+++|+.|++++|.+++.....  .+..+++|+.|+++ +.+.+.....+...++
T Consensus       267 ~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~--~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~  342 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCT--LIQKCPNLEVLETR-NVIGDRGLEVLAQYCK  342 (592)
T ss_dssp             CCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHH--HHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT
T ss_pred             hccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHH--HHHhCcCCCEEecc-CccCHHHHHHHHHhCC
Confidence            455688888888753 3457778888999999999999865432211  14578999999999 4444333344555689


Q ss_pred             CCcEEecCC-----------CCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccC-CCCCCEEecC----
Q 036984          280 GLMHLNLSR-----------NAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ-LKEVRLIDLS----  343 (603)
Q Consensus       280 ~L~~L~L~~-----------n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls----  343 (603)
                      +|++|++++           +.+.+.       .++.....+++|++|+++.|.+++..+..+.. +++|+.|+++    
T Consensus       343 ~L~~L~L~~g~~~~~~~~~~~~~~~~-------~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~  415 (592)
T 3ogk_B          343 QLKRLRIERGADEQGMEDEEGLVSQR-------GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR  415 (592)
T ss_dssp             TCCEEEEECCCCSSTTSSTTCCCCHH-------HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred             CCCEEEeecCccccccccccCccCHH-------HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence            999999983           233211       12223445899999999999998776666655 8999999996    


Q ss_pred             CCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCC--CcccCchhcc
Q 036984          344 HNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNK--LTGEIPTQIG  421 (603)
Q Consensus       344 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~l~  421 (603)
                      .|.+++...+                                    ......+..+++|+.|++++|.  +++..+..+.
T Consensus       416 ~n~l~~~p~~------------------------------------~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~  459 (592)
T 3ogk_B          416 EERITDLPLD------------------------------------NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG  459 (592)
T ss_dssp             CSCCSSCCCH------------------------------------HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred             CccccCchHH------------------------------------HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence            5556531100                                    0011234568899999998654  6665555554


Q ss_pred             -CcCcCCEEeccccccccc-CCcCCcCCCCCCEEeCCCCcCccc-CC-CccCCCCCCceecccCccccc
Q 036984          422 -YLTRIRALNLSHNNLTGT-IPITFSNLKQIESLDLSYNLLHGK-IP-QLIVLTTLAVFRVAYNNLSGK  486 (603)
Q Consensus       422 -~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~-~~-~~~~l~~L~~L~l~~N~l~~~  486 (603)
                       .+++|++|+|++|.+++. .+..+.++++|++|++++|++++. ++ ....+++|++|++++|+++..
T Consensus       460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence             488999999999999863 344567889999999999998754 33 345689999999999998754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.7e-27  Score=237.88  Aligned_cols=204  Identities=19%  Similarity=0.154  Sum_probs=152.4

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE  109 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (603)
                      |+.....+++++.++.   .|..+.  ++|++|++++|.++++++..+. +++|++|++++|.+++..+..|.++++|++
T Consensus        30 C~~~~~c~~~~~~l~~---iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           30 CDRNGICKGSSGSLNS---IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             ECTTSEEECCSTTCSS---CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCeEeeCCCCCccc---cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            6777788999988875   233332  5899999999999999887887 999999999999999988888999999999


Q ss_pred             EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCc-ccccCCCCCcEEEccCce-eeeecCccccCCCCCCceeecc
Q 036984          110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISS-SPLMLLTSIEELILSNNH-FQIPISLEPLSNLSKLKAFNGE  187 (603)
Q Consensus       110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~~l~~~  187 (603)
                      |++++|.+++..+..|+++++|++|++++|.++ .++. ..+..+++|++|++++|. +. ...                
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~----------------  166 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT-KIQ----------------  166 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC-EEC----------------
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcccc-ccC----------------
Confidence            999999999766666999999999999999998 4555 578889999999999884 32 111                


Q ss_pred             ceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccc
Q 036984          188 IYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQ  267 (603)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~  267 (603)
                                                      +..+..+++|+.|++++|.+.+..|..   +..+++|++|++++|.+.
T Consensus       167 --------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          167 --------------------------------RKDFAGLTFLEELEIDASDLQSYEPKS---LKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             --------------------------------TTTTTTCCEEEEEEEEETTCCEECTTT---TTTCSEEEEEEEECSCST
T ss_pred             --------------------------------HHHccCCCCCCEEECCCCCcCccCHHH---HhccccCCeecCCCCccc
Confidence                                            223344455566666666665555554   455666777777777665


Q ss_pred             ccCChhhhhcCCCCcEEecCCCCccc
Q 036984          268 GHIPVEIGTYLPGLMHLNLSRNAFND  293 (603)
Q Consensus       268 ~~~~~~~~~~l~~L~~L~L~~n~l~~  293 (603)
                       .+|...+..+++|+.|++++|.+.+
T Consensus       212 -~~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          212 -LLLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             -THHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             -cchhhhhhhcccccEEECCCCcccc
Confidence             5555555556666666666665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=7.9e-27  Score=230.61  Aligned_cols=248  Identities=19%  Similarity=0.209  Sum_probs=146.8

Q ss_pred             cEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcC--CchhhcCCCCCcEEe
Q 036984           35 RLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRN--FPLGLCELVLLRELY  111 (603)
Q Consensus        35 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~  111 (603)
                      +.++.+++.++..   +..+  .++|++|++++|.++.++...|. +++|++|++++|.+...  .+..+..+++|++|+
T Consensus        10 ~~l~c~~~~l~~i---p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLTSV---PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCSSC---CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CEEEcCCCCcccC---CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            3556666555431   2222  24666666666666666666555 66666666666666532  144555566666666


Q ss_pred             ccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceee
Q 036984          112 IDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLE  191 (603)
Q Consensus       112 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~  191 (603)
                      +++|.++ .+|..+.++++|++|++++|.+++..+...+..+++|++|++++|.+.                        
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------------------------  139 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR------------------------  139 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE------------------------
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC------------------------
Confidence            6666665 344456666666666666666653222124555555555555555443                        


Q ss_pred             eccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccC-CCCCCCccccccCCccEEEccCccccccC
Q 036984          192 TESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSG-EFPNWLMPIHCLQKLATLDVSNNFFQGHI  270 (603)
Q Consensus       192 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~  270 (603)
                                               +..+..+..+++|+.|++++|.+.+ ..|..   +..+++|++|++++|.+.+ +
T Consensus       140 -------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~Ls~n~l~~-~  190 (306)
T 2z66_A          140 -------------------------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQ-L  190 (306)
T ss_dssp             -------------------------ECSTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTTSCCCE-E
T ss_pred             -------------------------ccchhhcccCcCCCEEECCCCccccccchhH---HhhCcCCCEEECCCCCcCC-c
Confidence                                     2333445556667777777777664 34544   4566777777777777763 3


Q ss_pred             ChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCC-CCCEEecCCCcCcc
Q 036984          271 PVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLK-EVRLIDLSHNNLSG  349 (603)
Q Consensus       271 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~  349 (603)
                      +...+..+++|+.|++++|.+.++.        +..+..+++|++|++++|.+++..+..+..++ +|++|++++|++++
T Consensus       191 ~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          191 SPTAFNSLSSLQVLNMSHNNFFSLD--------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSBCC--------SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CHHHhcCCCCCCEEECCCCccCccC--------hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            3333334667777777766655432        23445567777777777777776666666663 67777777777753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.7e-26  Score=224.30  Aligned_cols=225  Identities=20%  Similarity=0.174  Sum_probs=139.8

Q ss_pred             CEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc
Q 036984           61 QELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ  140 (603)
Q Consensus        61 ~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~  140 (603)
                      ++++.+++.++.++...  .++|++|++++|.+++..+..|..+++|++|++++|.+++..|.+|.++++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            45566666555554432  4556666666666666555556666666666666666665555666666666666666665


Q ss_pred             -CCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCc
Q 036984          141 -LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTF  219 (603)
Q Consensus       141 -i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  219 (603)
                       +. .++...+..+++|++|++++|.+.                                                 +..
T Consensus        92 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~-------------------------------------------------~~~  121 (285)
T 1ozn_A           92 QLR-SVDPATFHGLGRLHTLHLDRCGLQ-------------------------------------------------ELG  121 (285)
T ss_dssp             TCC-CCCTTTTTTCTTCCEEECTTSCCC-------------------------------------------------CCC
T ss_pred             Ccc-ccCHHHhcCCcCCCEEECCCCcCC-------------------------------------------------EEC
Confidence             44 332225555555555555555443                                                 111


Q ss_pred             ChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcC
Q 036984          220 PKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRL  299 (603)
Q Consensus       220 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~  299 (603)
                      +..+..+++|+.|++++|.+.+..+..   +..+++|++|++++|.++ .++...+..+++|+.|++++|.+.+      
T Consensus       122 ~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~------  191 (285)
T 1ozn_A          122 PGLFRGLAALQYLYLQDNALQALPDDT---FRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAH------  191 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCE------
T ss_pred             HhHhhCCcCCCEEECCCCcccccCHhH---hccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccc------
Confidence            233444455555555555555443333   455677777777777776 5555545557778887777776543      


Q ss_pred             cccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984          300 QGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG  349 (603)
Q Consensus       300 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  349 (603)
                        ..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus       192 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          192 --VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             --ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             --cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence              335566677888888888888887766778888888888888888864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=4.3e-26  Score=226.86  Aligned_cols=223  Identities=18%  Similarity=0.242  Sum_probs=148.6

Q ss_pred             CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcc
Q 036984          227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW  306 (603)
Q Consensus       227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~  306 (603)
                      +.++.|++++|.+. .+|..   +..+++|++|++++|.+. .+|..+.. +++|++|++++|.+.         .+|..
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~---l~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~---------~lp~~  145 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQ---AFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR---------ALPAS  145 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSC---GGGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC---------CCCGG
T ss_pred             cceeEEEccCCCch-hcChh---hhhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc---------cCcHH
Confidence            45666666666665 44443   445666666666666666 56654443 666666666665543         33555


Q ss_pred             ccCCCCCCEEeccCCcCcccCCcccc---------CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCC
Q 036984          307 IDRLPQISYLLLANNYIEGEIPAQLC---------QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASA  377 (603)
Q Consensus       307 l~~l~~L~~L~L~~n~l~~~~~~~~~---------~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (603)
                      ++.+++|++|++++|.+.+.+|..+.         .+++|++|++++|+++ .+|..+                      
T Consensus       146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l----------------------  202 (328)
T 4fcg_A          146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI----------------------  202 (328)
T ss_dssp             GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG----------------------
T ss_pred             HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh----------------------
Confidence            66666677777766666556655543         3777777777777775 444322                      


Q ss_pred             CCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCC
Q 036984          378 PALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY  457 (603)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  457 (603)
                                         ..+++|+.|++++|.+++ +|..+..+++|++|++++|.+.+.+|..|.++++|++|++++
T Consensus       203 -------------------~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          203 -------------------ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             -------------------GGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred             -------------------cCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence                               335677777777777773 445677777777777777777777777777777777777777


Q ss_pred             CcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcC
Q 036984          458 NLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF  507 (603)
Q Consensus       458 N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~  507 (603)
                      |.+.+.+| .+..+++|++|++++|++.+.+|..++.++.++.+.+..|..
T Consensus       263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            77777777 677777777777777777777777777777777776665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=7.6e-26  Score=235.26  Aligned_cols=247  Identities=20%  Similarity=0.164  Sum_probs=162.7

Q ss_pred             CcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEec
Q 036984           34 LRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYI  112 (603)
Q Consensus        34 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (603)
                      .+.++.++..++.   .|..+.  ++++.|+|++|.++.+++..|. +++|++|++++|.+....+..|.++++|++|+|
T Consensus        45 ~~~v~c~~~~l~~---iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLRE---VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCSS---CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCCcCc---CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            4566666666553   222222  5677777777777777777666 777777777777777766677777777777777


Q ss_pred             cCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeee
Q 036984          113 DNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLET  192 (603)
Q Consensus       113 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~  192 (603)
                      ++|+++...+..|.++++|++|++++|.+. .++...|..+++|++|++++|......+...+.                
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~----------------  182 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE----------------  182 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTT----------------
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhh----------------
Confidence            777777666666777777777777777776 344446777777777777764332222222222                


Q ss_pred             ccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCCh
Q 036984          193 ESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPV  272 (603)
Q Consensus       193 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~  272 (603)
                              .+.+|+.|++++|.+... | .+..+++|+.|++++|.+.+..|..   +..+++|+.|++++|.+. .++.
T Consensus       183 --------~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~L~~n~l~-~~~~  248 (440)
T 3zyj_A          183 --------GLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGS---FQGLMHLQKLWMIQSQIQ-VIER  248 (440)
T ss_dssp             --------TCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTT---TTTCTTCCEEECTTCCCC-EECT
T ss_pred             --------cccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhh---hccCccCCEEECCCCcee-EECh
Confidence                    223566666666665532 2 3566777777788777777666655   566777888888888777 4444


Q ss_pred             hhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCc
Q 036984          273 EIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIE  324 (603)
Q Consensus       273 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~  324 (603)
                      ..+..+++|+.|+|++|.+..+.        +..+..+++|+.|++++|.+.
T Consensus       249 ~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          249 NAFDNLQSLVEINLAHNNLTLLP--------HDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TSSTTCTTCCEEECTTSCCCCCC--------TTTTSSCTTCCEEECCSSCEE
T ss_pred             hhhcCCCCCCEEECCCCCCCccC--------hhHhccccCCCEEEcCCCCcc
Confidence            55555778888777777665443        334555778888888888775

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=7.4e-26  Score=236.22  Aligned_cols=247  Identities=20%  Similarity=0.154  Sum_probs=149.3

Q ss_pred             CcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEec
Q 036984           34 LRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYI  112 (603)
Q Consensus        34 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (603)
                      .+.++.++..++.   .+..+  .+++++|+|++|.++.+++..|. +++|++|++++|.+.+..+..|.++++|++|+|
T Consensus        56 ~~~v~c~~~~l~~---iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLSE---VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCSS---CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcCc---cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            3456666555543   22222  25667777777777766666666 677777777777776666666677777777777


Q ss_pred             cCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeee
Q 036984          113 DNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLET  192 (603)
Q Consensus       113 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~  192 (603)
                      ++|.++...+..|.++++|++|++++|.+. .++...|..+++|++|++++|......+...+.                
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~----------------  193 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE----------------  193 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTT----------------
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhcc----------------
Confidence            777776655556666777777777777766 344446666777777777664322222221222                


Q ss_pred             ccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCCh
Q 036984          193 ESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPV  272 (603)
Q Consensus       193 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~  272 (603)
                              .+.+|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..|..   +..+++|+.|++++|.+. .++.
T Consensus       194 --------~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~L~~n~l~-~~~~  259 (452)
T 3zyi_A          194 --------GLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGS---FHGLSSLKKLWVMNSQVS-LIER  259 (452)
T ss_dssp             --------TCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGG---GTTCTTCCEEECTTSCCC-EECT
T ss_pred             --------CCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCccc---ccCccCCCEEEeCCCcCc-eECH
Confidence                    223555555666555432  23556666777777777776655554   556677777777777776 3433


Q ss_pred             hhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCc
Q 036984          273 EIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIE  324 (603)
Q Consensus       273 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~  324 (603)
                      ..+..+++|+.|++++|.+..+.        +..+..+++|+.|++++|.+.
T Consensus       260 ~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          260 NAFDGLASLVELNLAHNNLSSLP--------HDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCC--------TTSSTTCTTCCEEECCSSCEE
T ss_pred             HHhcCCCCCCEEECCCCcCCccC--------hHHhccccCCCEEEccCCCcC
Confidence            44445677777777766655433        334455677777777777664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=9.6e-26  Score=220.34  Aligned_cols=206  Identities=19%  Similarity=0.181  Sum_probs=107.2

Q ss_pred             CCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCc-CcccCCcccc
Q 036984          254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNY-IEGEIPAQLC  332 (603)
Q Consensus       254 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~  332 (603)
                      ++|++|++++|.+. .++...+..+++|++|++++|.+..+        .|..+..+++|++|++++|. +....+..+.
T Consensus        32 ~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~  102 (285)
T 1ozn_A           32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARI--------DAAAFTGLALLEQLDLSDNAQLRSVDPATFH  102 (285)
T ss_dssp             TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred             CCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCcccee--------CHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence            45555555555554 33333333355555555555544322        23344445555555555554 4444455555


Q ss_pred             CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCC
Q 036984          333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL  412 (603)
Q Consensus       333 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  412 (603)
                      .+++|++|++++|++++..|.                                         .+..+++|++|++++|.+
T Consensus       103 ~l~~L~~L~l~~n~l~~~~~~-----------------------------------------~~~~l~~L~~L~l~~n~l  141 (285)
T 1ozn_A          103 GLGRLHTLHLDRCGLQELGPG-----------------------------------------LFRGLAALQYLYLQDNAL  141 (285)
T ss_dssp             TCTTCCEEECTTSCCCCCCTT-----------------------------------------TTTTCTTCCEEECCSSCC
T ss_pred             CCcCCCEEECCCCcCCEECHh-----------------------------------------HhhCCcCCCEEECCCCcc
Confidence            555555555555555432221                                         122344555555555555


Q ss_pred             cccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcc
Q 036984          413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRV  491 (603)
Q Consensus       413 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~  491 (603)
                      ++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++++..| .+..+++|+.|++++|++++..+..+
T Consensus       142 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  221 (285)
T 1ozn_A          142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL  221 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred             cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc
Confidence            54444445555555555555555554444445555555555555555555444 45555555555555555554444445


Q ss_pred             cccCCCCcccccCCcCCC
Q 036984          492 AQFSTFEEDSYEGNPFLY  509 (603)
Q Consensus       492 ~~l~~l~~~~l~gn~~~c  509 (603)
                      ..++.++.+++++||+.|
T Consensus       222 ~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          222 APLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTCTTCCEEECCSSCEEC
T ss_pred             ccCcccCEEeccCCCccC
Confidence            555555555566665555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.8e-25  Score=222.39  Aligned_cols=235  Identities=22%  Similarity=0.209  Sum_probs=149.9

Q ss_pred             CCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEc
Q 036984           57 LVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDV  136 (603)
Q Consensus        57 l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  136 (603)
                      .+++++|++++|.++.++...+.+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            36677777777777766665555777777777777776 36666777777777777777776 55666777777777777


Q ss_pred             ccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCC
Q 036984          137 SYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDD  216 (603)
Q Consensus       137 ~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  216 (603)
                      ++|.+.+.+|. .+..      ..+.                                  ..+..+.+|+.|++++|.++
T Consensus       158 ~~n~~~~~~p~-~~~~------~~~~----------------------------------~~~~~l~~L~~L~L~~n~l~  196 (328)
T 4fcg_A          158 RACPELTELPE-PLAS------TDAS----------------------------------GEHQGLVNLQSLRLEWTGIR  196 (328)
T ss_dssp             EEETTCCCCCS-CSEE------EC-C----------------------------------CCEEESTTCCEEEEEEECCC
T ss_pred             CCCCCccccCh-hHhh------ccch----------------------------------hhhccCCCCCEEECcCCCcC
Confidence            77666555554 2221      0000                                  00111124444444444444


Q ss_pred             CCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccC
Q 036984          217 GTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSY  296 (603)
Q Consensus       217 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  296 (603)
                       .+|..+..+++|+.|++++|.+.+ +|..   +..+++|++|++++|.+.+.+|..+.. +++|+.|++++|.+.    
T Consensus       197 -~lp~~l~~l~~L~~L~L~~N~l~~-l~~~---l~~l~~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~----  266 (328)
T 4fcg_A          197 -SLPASIANLQNLKSLKIRNSPLSA-LGPA---IHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNL----  266 (328)
T ss_dssp             -CCCGGGGGCTTCCEEEEESSCCCC-CCGG---GGGCTTCCEEECTTCTTCCBCCCCTTC-CCCCCEEECTTCTTC----
T ss_pred             -cchHhhcCCCCCCEEEccCCCCCc-Cchh---hccCCCCCEEECcCCcchhhhHHHhcC-CCCCCEEECCCCCch----
Confidence             445556666677777777777664 3332   566777777777777766666654443 677777777666543    


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCc
Q 036984          297 NRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS  348 (603)
Q Consensus       297 ~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  348 (603)
                          +.+|..++.+++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus       267 ----~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          267 ----LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ----CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             ----hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence                355666777788888888888888788888888888888888777664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.6e-24  Score=231.76  Aligned_cols=113  Identities=31%  Similarity=0.324  Sum_probs=62.3

Q ss_pred             CCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEe
Q 036984           32 ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELY  111 (603)
Q Consensus        32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (603)
                      .+++.|++++|.++.   ++..+.  ++|++|++++|.++.++.   .+++|++|++++|++++ +|.   .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~~---lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLTT---LPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCSC---CCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCcCc---cChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence            356777777776653   222222  566777777776666554   25666666666666655 333   455666666


Q ss_pred             ccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCce
Q 036984          112 IDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNH  165 (603)
Q Consensus       112 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~  165 (603)
                      +++|.+++ +|.   .+++|+.|++++|.+++ +|. .   +++|++|++++|.
T Consensus       108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~-~---l~~L~~L~Ls~N~  152 (622)
T 3g06_A          108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV-L---PPGLQELSVSDNQ  152 (622)
T ss_dssp             ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC-C---CTTCCEEECCSSC
T ss_pred             CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC-C---CCCCCEEECcCCc
Confidence            66666653 222   34556666666665552 333 1   2445555555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.4e-24  Score=232.17  Aligned_cols=93  Identities=24%  Similarity=0.263  Sum_probs=58.9

Q ss_pred             CCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEccc
Q 036984           59 HLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY  138 (603)
Q Consensus        59 ~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  138 (603)
                      ++++|++++|.++.++....  ++|++|++++|.++. +|.   .+++|++|+|++|+++. +|.   .+++|++|++++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~  110 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS  110 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence            46777777777776665443  677777777777765 333   45677777777777763 333   556777777777


Q ss_pred             CcCCccCCcccccCCCCCcEEEccCcee
Q 036984          139 NQLTESISSSPLMLLTSIEELILSNNHF  166 (603)
Q Consensus       139 n~i~~~~~~~~~~~l~~L~~L~l~~n~~  166 (603)
                      |.+++ +|.    .+++|++|++++|.+
T Consensus       111 N~l~~-l~~----~l~~L~~L~L~~N~l  133 (622)
T 3g06_A          111 NPLTH-LPA----LPSGLCKLWIFGNQL  133 (622)
T ss_dssp             CCCCC-CCC----CCTTCCEEECCSSCC
T ss_pred             CcCCC-CCC----CCCCcCEEECCCCCC
Confidence            76653 333    345566666666544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.2e-26  Score=228.27  Aligned_cols=215  Identities=24%  Similarity=0.224  Sum_probs=116.3

Q ss_pred             CCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEccc
Q 036984           60 LQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY  138 (603)
Q Consensus        60 L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  138 (603)
                      ++..+++.+.+.......+. +++|++|++++|.+++..|..|..+++|++|++++|.+++..+  +.++++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            34445555555544444444 5566666666666666555566666666666666666654332  56666666666666


Q ss_pred             CcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCC
Q 036984          139 NQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGT  218 (603)
Q Consensus       139 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  218 (603)
                      |.+++ ++     ..++|++|++++|.+...                                                 
T Consensus        90 n~l~~-l~-----~~~~L~~L~l~~n~l~~~-------------------------------------------------  114 (317)
T 3o53_A           90 NYVQE-LL-----VGPSIETLHAANNNISRV-------------------------------------------------  114 (317)
T ss_dssp             SEEEE-EE-----ECTTCCEEECCSSCCSEE-------------------------------------------------
T ss_pred             Ccccc-cc-----CCCCcCEEECCCCccCCc-------------------------------------------------
Confidence            66542 22     225556666655554321                                                 


Q ss_pred             cChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCc
Q 036984          219 FPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNR  298 (603)
Q Consensus       219 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~  298 (603)
                      .+.   .+++|+.|++++|.+.+..+..   +..+++|++|++++|.+.+..+..++..+++|++|++++|.+.++..  
T Consensus       115 ~~~---~~~~L~~L~l~~N~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--  186 (317)
T 3o53_A          115 SCS---RGQGKKNIYLANNKITMLRDLD---EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--  186 (317)
T ss_dssp             EEC---CCSSCEEEECCSSCCCSGGGBC---TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--
T ss_pred             Ccc---ccCCCCEEECCCCCCCCccchh---hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--
Confidence            111   1344566666666665544433   44566677777777766643344444345666666666665544311  


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCc
Q 036984          299 LQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS  348 (603)
Q Consensus       299 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  348 (603)
                              ...+++|++|++++|.+++..+ .+..+++|+.|++++|+++
T Consensus       187 --------~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          187 --------QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             --------CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC
T ss_pred             --------ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc
Confidence                    1124556666666665553322 3555555555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2.1e-28  Score=265.41  Aligned_cols=227  Identities=14%  Similarity=0.047  Sum_probs=147.0

Q ss_pred             cChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcc-cccCC
Q 036984          219 FPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN-DLSYN  297 (603)
Q Consensus       219 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~  297 (603)
                      ++..+..+++|+.|++++|.+++.....  .+..+++|+.|++++| +.+.....+...+++|++|+++++.-. ..+.+
T Consensus       281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~--~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~  357 (594)
T 2p1m_B          281 LPAVYSVCSRLTTLNLSYATVQSYDLVK--LLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV  357 (594)
T ss_dssp             GGGGHHHHTTCCEEECTTCCCCHHHHHH--HHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred             HHHHHHhhCCCCEEEccCCCCCHHHHHH--HHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence            4555567888999999998865322111  0346789999999988 442222334445889999988543100 01112


Q ss_pred             cCcccCCccc-cCCCCCCEEeccCCcCcccCCcccc-CCCCCCEEecC--C----CcCccCCChhhhcccccccccCCCC
Q 036984          298 RLQGSIPNWI-DRLPQISYLLLANNYIEGEIPAQLC-QLKEVRLIDLS--H----NNLSGHIPFCLVNTALSEGYYDAVA  369 (603)
Q Consensus       298 ~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~~~~~~~~~~~~~~~~~~~~~  369 (603)
                      .+++.....+ ..+++|++|.+..|.+++.....+. .+++|+.|+++  +    +.++. .|..               
T Consensus       358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~---------------  421 (594)
T 2p1m_B          358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLD---------------  421 (594)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTH---------------
T ss_pred             CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC-Cchh---------------
Confidence            2221111112 2378899998888888766555554 57899999998  3    33431 1100               


Q ss_pred             CCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccC-cCcCCEEecccccccccCCcCC-cCC
Q 036984          370 PTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGY-LTRIRALNLSHNNLTGTIPITF-SNL  447 (603)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l  447 (603)
                                          ......+..+++|+.|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ .++
T Consensus       422 --------------------~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  480 (594)
T 2p1m_B          422 --------------------IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC  480 (594)
T ss_dssp             --------------------HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred             --------------------hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence                                00112245678999999977 777665555655 7899999999999876555444 568


Q ss_pred             CCCCEEeCCCCcCcccCC--CccCCCCCCceecccCcccc
Q 036984          448 KQIESLDLSYNLLHGKIP--QLIVLTTLAVFRVAYNNLSG  485 (603)
Q Consensus       448 ~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~  485 (603)
                      ++|++|++++|++++...  ....+++|+.|++++|+++.
T Consensus       481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            899999999999865433  34458899999999998853

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=9.4e-26  Score=236.65  Aligned_cols=246  Identities=21%  Similarity=0.176  Sum_probs=199.4

Q ss_pred             CcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCC
Q 036984          201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPG  280 (603)
Q Consensus       201 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~  280 (603)
                      ..++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|     +..+++|++|++++|.++ .+|.     .++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~l~-~l~~-----~~~  100 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNNYVQ-ELLV-----GPS  100 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-----CTTCTTCCEEECCSSEEE-EEEE-----CTT
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-----cccCCCCCEEEecCCcCC-CCCC-----CCC
Confidence            34489999999999998888899999999999999999886554     567899999999999998 4442     479


Q ss_pred             CcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccc
Q 036984          281 LMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTAL  360 (603)
Q Consensus       281 L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  360 (603)
                      |+.|++++|.+..+..           ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+.    
T Consensus       101 L~~L~L~~N~l~~~~~-----------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----  165 (487)
T 3oja_A          101 IETLHAANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----  165 (487)
T ss_dssp             CCEEECCSSCCCCEEE-----------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG----
T ss_pred             cCEEECcCCcCCCCCc-----------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh----
Confidence            9999999988765431           2357899999999999988888899999999999999999865553332    


Q ss_pred             cccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccC
Q 036984          361 SEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI  440 (603)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  440 (603)
                                                          ..+++|+.|+|++|.+++..+  ...+++|+.|+|++|.+++..
T Consensus       166 ------------------------------------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          166 ------------------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             ------------------------------------GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC
T ss_pred             ------------------------------------hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC
Confidence                                                246789999999999986633  446899999999999999654


Q ss_pred             CcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCccc-ccCCCcccccCCCCccccc-------CCcCCCCC
Q 036984          441 PITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS-GKIPDRVAQFSTFEEDSYE-------GNPFLYGQ  511 (603)
Q Consensus       441 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~l~~l~~~~l~-------gn~~~c~~  511 (603)
                      | .+..+++|+.|++++|.+++.++.+..+++|+.|++++|++. +.+|..+..++.+..+.+.       +|++.|.+
T Consensus       208 ~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~  285 (487)
T 3oja_A          208 P-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV  285 (487)
T ss_dssp             G-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSS
T ss_pred             H-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccC
Confidence            4 488899999999999999964447888999999999999998 5666767777777777665       77777743

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.92  E-value=4.2e-27  Score=255.02  Aligned_cols=395  Identities=11%  Similarity=0.031  Sum_probs=257.5

Q ss_pred             CCCCCceecccccccccccchHHHHHHhcCC-CcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccC----c
Q 036984            3 EFKNLEHLVMDQMLVEVNTSFLQIVSELMAS-LRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLG----A   77 (603)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~   77 (603)
                      .+++|++|+|+++.+. +..... ....++. |++|+|++|.............++++|++|+|++|.+++....    .
T Consensus       110 ~~~~L~~L~L~~~~i~-~~~~~~-l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  187 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVS-DLDLDR-LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL  187 (592)
T ss_dssp             HCTTCCEEEEESCBCC-HHHHHH-HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred             hCCCCCeEEeeccEec-HHHHHH-HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence            5899999999998543 222222 2232445 9999999986211111122334789999999999988765432    2


Q ss_pred             cc-CCCCCEEEccCCCCCc----CCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCC---ccCCccc
Q 036984           78 WQ-TTSLQELNVASNKLTR----NFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLT---ESISSSP  149 (603)
Q Consensus        78 ~~-~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~  149 (603)
                      .. +++|++|++++|.+++    ..+..+.++++|++|++++|.+.+ ++..+.++++|+.|++++....   ..... .
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~  265 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYM-N  265 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSS-C
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHH-H
Confidence            33 8999999999999873    334456788999999999999885 6688899999999999864322   12222 5


Q ss_pred             ccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcC-hhhccCCC
Q 036984          150 LMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFP-KFLYHQHD  228 (603)
Q Consensus       150 ~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~  228 (603)
                      +..+++|+.|+++++...   ...                       ..+...++|++|++++|.+++... ..+..+++
T Consensus       266 l~~~~~L~~L~l~~~~~~---~l~-----------------------~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPN---EMP-----------------------ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             CCCCTTCCEEEETTCCTT---TGG-----------------------GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhccccccccCccccchh---HHH-----------------------HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence            677889999998875221   000                       011233478888888888654333 44678888


Q ss_pred             CCEEEcCCCcccCC-CCCCCccccccCCccEEEccC-----------ccccccCChhhhhcCCCCcEEecCCCCcccccC
Q 036984          229 LKNADLSHLNLSGE-FPNWLMPIHCLQKLATLDVSN-----------NFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSY  296 (603)
Q Consensus       229 L~~L~L~~n~i~~~-~~~~~~~~~~l~~L~~L~Ls~-----------n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  296 (603)
                      |+.|+++ +.+... ++..   ...+++|++|++++           +.+++.....+...+++|++|+++.|.+.+   
T Consensus       320 L~~L~L~-~~~~~~~l~~~---~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~---  392 (592)
T 3ogk_B          320 LEVLETR-NVIGDRGLEVL---AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN---  392 (592)
T ss_dssp             CCEEEEE-GGGHHHHHHHH---HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH---
T ss_pred             CCEEecc-CccCHHHHHHH---HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH---
Confidence            9999888 333321 2211   24578899999983           455533233344558889998886555432   


Q ss_pred             CcCcccCCccccC-CCCCCEEecc----CCcCccc-----CCccccCCCCCCEEecCCCc--CccCCChhhhcccccccc
Q 036984          297 NRLQGSIPNWIDR-LPQISYLLLA----NNYIEGE-----IPAQLCQLKEVRLIDLSHNN--LSGHIPFCLVNTALSEGY  364 (603)
Q Consensus       297 ~~~~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~~  364 (603)
                           ..+..+.. +++|++|+++    .|.+++.     ++..+.++++|+.|++++|.  +++..+.           
T Consensus       393 -----~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~-----------  456 (592)
T 3ogk_B          393 -----ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS-----------  456 (592)
T ss_dssp             -----HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH-----------
T ss_pred             -----HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH-----------
Confidence                 22333333 7888899886    5677653     23335668889999997644  4422111           


Q ss_pred             cCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCccc-CchhccCcCcCCEEeccccccccc-CCc
Q 036984          365 YDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE-IPTQIGYLTRIRALNLSHNNLTGT-IPI  442 (603)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~-~~~  442 (603)
                                                   .....+++|+.|++++|++++. ++..+..+++|++|+|++|.+++. ++.
T Consensus       457 -----------------------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (592)
T 3ogk_B          457 -----------------------------YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA  507 (592)
T ss_dssp             -----------------------------HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred             -----------------------------HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence                                         1223367888999999888753 344557788899999999988754 333


Q ss_pred             CCcCCCCCCEEeCCCCcCcccCC-Cc-cCCCCCCceecc
Q 036984          443 TFSNLKQIESLDLSYNLLHGKIP-QL-IVLTTLAVFRVA  479 (603)
Q Consensus       443 ~~~~l~~L~~L~Ls~N~l~~~~~-~~-~~l~~L~~L~l~  479 (603)
                      .+..+++|++|++++|++++... .+ ..++.+....+.
T Consensus       508 ~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~  546 (592)
T 3ogk_B          508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP  546 (592)
T ss_dssp             HHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred             HHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence            34567889999999998875422 22 235555444333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=4.9e-24  Score=206.23  Aligned_cols=203  Identities=21%  Similarity=0.262  Sum_probs=119.0

Q ss_pred             CccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCC
Q 036984          255 KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQL  334 (603)
Q Consensus       255 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  334 (603)
                      ..+.++++++.++ .+|..+.   ++++.|++++|.+..+.        +..+..+++|++|++++|.++...+..|..+
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l   84 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLP--------SKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL   84 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCC--------TTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred             CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeC--------HHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence            4555566655555 4554332   35566655555544322        2334445666666666666665555555666


Q ss_pred             CCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcc
Q 036984          335 KEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG  414 (603)
Q Consensus       335 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  414 (603)
                      ++|++|++++|++++..+                                         ..+..+++|+.|++++|.+++
T Consensus        85 ~~L~~L~l~~n~l~~~~~-----------------------------------------~~~~~l~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPI-----------------------------------------GVFDQLVNLAELRLDRNQLKS  123 (270)
T ss_dssp             TTCCEEECCSSCCCCCCT-----------------------------------------TTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCcCCcCCH-----------------------------------------hHcccccCCCEEECCCCccCe
Confidence            666666666666652211                                         122335566666666666665


Q ss_pred             cCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccc
Q 036984          415 EIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQ  493 (603)
Q Consensus       415 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~  493 (603)
                      ..+..+..+++|++|+|++|.+++..+..|.++++|++|++++|++++..+ .+..+++|++|++++|++++..+..+..
T Consensus       124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (270)
T 2o6q_A          124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS  203 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence            555556666666666666666665555556666666666666666665444 4556666666666666666555555566


Q ss_pred             cCCCCcccccCCcCCCC
Q 036984          494 FSTFEEDSYEGNPFLYG  510 (603)
Q Consensus       494 l~~l~~~~l~gn~~~c~  510 (603)
                      ++.++.+++++|||.|.
T Consensus       204 l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          204 LEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CTTCCEEECCSSCBCCS
T ss_pred             ccCCCEEEecCCCeeCC
Confidence            66666677777777663

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.5e-26  Score=228.87  Aligned_cols=251  Identities=21%  Similarity=0.278  Sum_probs=172.3

Q ss_pred             cccEEeccCCCCCCCcChhhccCCCCCEEEcCCCccc-CCCCCCCc----cccccCCccEEEccCccccccCChhhh-hc
Q 036984          204 QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLS-GEFPNWLM----PIHCLQKLATLDVSNNFFQGHIPVEIG-TY  277 (603)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~----~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~~  277 (603)
                      +|+.+++++|.+  .+|..+...  |+.|++++|.+. ..+|....    ....+++|++|++++|.+++.+|..++ ..
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            677777777777  556655544  777788887773 23333200    011467888888888888777776653 55


Q ss_pred             CCCCcEEecCCCCcccccCCcCcccCCccccCC-----CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCC
Q 036984          278 LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL-----PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIP  352 (603)
Q Consensus       278 l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  352 (603)
                      +++|++|++++|.+..+         |..++.+     ++|++|++++|++.+..+..+..+++|++|++++|++.+.++
T Consensus       120 l~~L~~L~Ls~N~l~~~---------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR---------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG  190 (312)
T ss_dssp             SCCCSEEEEESCBCSSS---------SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred             CCCccEEEccCCCCcch---------hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence            77888888777766533         3334433     788888888888887777888888888888888888764311


Q ss_pred             hhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCccc---CchhccCcCcCCEE
Q 036984          353 FCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE---IPTQIGYLTRIRAL  429 (603)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L  429 (603)
                      ..                                     ....+..+++|++|++++|.+++.   ....+..+++|++|
T Consensus       191 ~~-------------------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L  233 (312)
T 1wwl_A          191 LI-------------------------------------SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL  233 (312)
T ss_dssp             HH-------------------------------------HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred             HH-------------------------------------HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence            00                                     000113467888888888888732   22334567888888


Q ss_pred             ecccccccccCC-cCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcC
Q 036984          430 NLSHNNLTGTIP-ITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF  507 (603)
Q Consensus       430 ~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~  507 (603)
                      ++++|++++..| ..+..+++|++|++++|+++ .+| .+.  ++|++|++++|++++. |. +..++.++.+++++|++
T Consensus       234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred             ECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence            888888887664 45666788888888888888 556 443  7888888888888865 66 77888888888888876


Q ss_pred             CC
Q 036984          508 LY  509 (603)
Q Consensus       508 ~c  509 (603)
                      ..
T Consensus       309 ~~  310 (312)
T 1wwl_A          309 LD  310 (312)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=9.9e-26  Score=223.55  Aligned_cols=244  Identities=21%  Similarity=0.182  Sum_probs=197.9

Q ss_pred             cccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCC
Q 036984          202 KFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGL  281 (603)
Q Consensus       202 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L  281 (603)
                      .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+     +..+++|++|++++|.++ .++.     .++|
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~n~l~-~l~~-----~~~L  101 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNNYVQ-ELLV-----GPSI  101 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-----ETTCTTCCEEECCSSEEE-EEEE-----CTTC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-----hhhcCCCCEEECcCCccc-cccC-----CCCc
Confidence            3489999999999998888899999999999999999876543     677899999999999998 4442     4799


Q ss_pred             cEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhccccc
Q 036984          282 MHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALS  361 (603)
Q Consensus       282 ~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  361 (603)
                      ++|++++|.+..+..           ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+      
T Consensus       102 ~~L~l~~n~l~~~~~-----------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------  164 (317)
T 3o53_A          102 ETLHAANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL------  164 (317)
T ss_dssp             CEEECCSSCCSEEEE-----------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG------
T ss_pred             CEEECCCCccCCcCc-----------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH------
Confidence            999999998765431           236789999999999998888888999999999999999975433222      


Q ss_pred             ccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCC
Q 036984          362 EGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP  441 (603)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~  441 (603)
                                                        ...+++|+.|++++|.+++. + ....+++|++|++++|++++. |
T Consensus       165 ----------------------------------~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~  207 (317)
T 3o53_A          165 ----------------------------------AASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-G  207 (317)
T ss_dssp             ----------------------------------GGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-C
T ss_pred             ----------------------------------hhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-h
Confidence                                              23467899999999999855 3 234589999999999999954 4


Q ss_pred             cCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCccc-ccCCCcccccCCCCcccccCCcCCCC
Q 036984          442 ITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS-GKIPDRVAQFSTFEEDSYEGNPFLYG  510 (603)
Q Consensus       442 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~l~~l~~~~l~gn~~~c~  510 (603)
                      ..+..+++|++|++++|++++..+.+..+++|+.|++++|++. +.+|..+..++.++.+++.+++.+.+
T Consensus       208 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             hhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence            5588899999999999999954337888999999999999998 66777778888888888886554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=6.3e-26  Score=224.45  Aligned_cols=84  Identities=15%  Similarity=0.156  Sum_probs=47.9

Q ss_pred             CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCc-cCcCccCC-------CCCCCCEEEcccCcCCccCCcccc-
Q 036984           80 TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLS-GSLPLCLT-------NLTSLQVLDVSYNQLTESISSSPL-  150 (603)
Q Consensus        80 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~~-  150 (603)
                      .++|++|++++|.+  .+|..+...  |++|++++|.++ ...|..+.       ++++|++|++++|.+++.+|...+ 
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            45666666666666  345544433  666666666663 22333333       466677777777766655555222 


Q ss_pred             cCCCCCcEEEccCceee
Q 036984          151 MLLTSIEELILSNNHFQ  167 (603)
Q Consensus       151 ~~l~~L~~L~l~~n~~~  167 (603)
                      ..+++|++|++++|.++
T Consensus       118 ~~l~~L~~L~Ls~N~l~  134 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWA  134 (312)
T ss_dssp             CCSCCCSEEEEESCBCS
T ss_pred             hcCCCccEEEccCCCCc
Confidence            55666666666666544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=4.1e-24  Score=207.70  Aligned_cols=208  Identities=21%  Similarity=0.230  Sum_probs=121.8

Q ss_pred             CCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccC
Q 036984          254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ  333 (603)
Q Consensus       254 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  333 (603)
                      ++|++|++++|.+. .++...+..+++|++|++++|.+..+.        +..+..+++|++|++++|.+++..+..+..
T Consensus        28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (276)
T 2z62_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIE--------DGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (276)
T ss_dssp             TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEEC--------TTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccC--------HHHccCCcCCCEEECCCCccCccChhhhcC
Confidence            35666666666665 344333334566666666665554322        233445666666666666666555566666


Q ss_pred             CCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCc
Q 036984          334 LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLT  413 (603)
Q Consensus       334 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  413 (603)
                      +++|++|++++|.+.+..+                                         ..+..+++|++|++++|.++
T Consensus        99 l~~L~~L~l~~n~l~~~~~-----------------------------------------~~~~~l~~L~~L~l~~n~l~  137 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLEN-----------------------------------------FPIGHLKTLKELNVAHNLIQ  137 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTT-----------------------------------------CCCTTCTTCCEEECCSSCCC
T ss_pred             CccccEEECCCCCccccCc-----------------------------------------hhcccCCCCCEEECcCCccc
Confidence            6666666666666653211                                         11233556666666666665


Q ss_pred             cc-CchhccCcCcCCEEecccccccccCCcCCcCCCCCC----EEeCCCCcCcccCCCccCCCCCCceecccCcccccCC
Q 036984          414 GE-IPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIE----SLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIP  488 (603)
Q Consensus       414 ~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p  488 (603)
                      +. +|..+..+++|++|++++|++++..+..|..+++|+    +|++++|++++..+......+|+.|++++|++++..+
T Consensus       138 ~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~  217 (276)
T 2z62_A          138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD  217 (276)
T ss_dssp             CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT
T ss_pred             eecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCH
Confidence            42 356666666666666666666655555555555555    6666677666544444444466667777776665555


Q ss_pred             CcccccCCCCcccccCCcCCCCC
Q 036984          489 DRVAQFSTFEEDSYEGNPFLYGQ  511 (603)
Q Consensus       489 ~~~~~l~~l~~~~l~gn~~~c~~  511 (603)
                      ..+..++.++.+++++||+.|.+
T Consensus       218 ~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          218 GIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             TTTTTCCSCCEEECCSSCBCCCT
T ss_pred             hHhcccccccEEEccCCcccccC
Confidence            55566666677777777776643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=7.7e-24  Score=206.60  Aligned_cols=110  Identities=25%  Similarity=0.266  Sum_probs=63.7

Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCcee
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFR  477 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~  477 (603)
                      +++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|+++...+ .+..+++|+.|+
T Consensus        99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  178 (290)
T 1p9a_G           99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (290)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence            4455556666665554444555566666666666666665555555556666666666666653333 345566666666


Q ss_pred             cccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984          478 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY  509 (603)
Q Consensus       478 l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c  509 (603)
                      +++|+++ .+|..+.....++.++++||||.|
T Consensus       179 L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            6666665 455555555556666666666666

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.9e-24  Score=226.64  Aligned_cols=220  Identities=22%  Similarity=0.176  Sum_probs=187.6

Q ss_pred             CCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCc
Q 036984          226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPN  305 (603)
Q Consensus       226 l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~  305 (603)
                      +++|+.|++++|.+.+..|..   +..+++|++|+|++|.+++..|   +..+++|+.|++++|.+.++.          
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~----------   96 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAAD---LAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL----------   96 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGG---GTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE----------
T ss_pred             CCCccEEEeeCCcCCCCCHHH---HhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC----------
Confidence            448999999999999876665   7789999999999999985544   555899999999999887543          


Q ss_pred             cccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEec
Q 036984          306 WIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSP  385 (603)
Q Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (603)
                         ..++|++|++++|.+++..+.   .+++|+.|++++|.+++..|..                               
T Consensus        97 ---~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~-------------------------------  139 (487)
T 3oja_A           97 ---VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD-------------------------------  139 (487)
T ss_dssp             ---ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBC-------------------------------
T ss_pred             ---CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchh-------------------------------
Confidence               138999999999999977654   4688999999999998654432                               


Q ss_pred             CCCCCCcchhhhhcccceEEECcCCCCcccCchhcc-CcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccC
Q 036984          386 NGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIG-YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI  464 (603)
Q Consensus       386 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  464 (603)
                                +..+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++..+  +..+++|+.|++++|.+++.+
T Consensus       140 ----------~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          140 ----------EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             ----------GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC
T ss_pred             ----------hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC
Confidence                      34478999999999999988888876 79999999999999997633  346899999999999999877


Q ss_pred             CCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCC
Q 036984          465 PQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQ  511 (603)
Q Consensus       465 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~  511 (603)
                      |.+..+++|+.|++++|.+++ +|..+..++.++.+++++|++.|++
T Consensus       208 ~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence            788899999999999999996 7777889999999999999999854

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=5.4e-23  Score=199.06  Aligned_cols=226  Identities=19%  Similarity=0.215  Sum_probs=180.8

Q ss_pred             ccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEE
Q 036984          205 LTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHL  284 (603)
Q Consensus       205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L  284 (603)
                      +..+.+..+.+.+.  .....+++|+.|++++|.+.. .+.    +..+++|++|++++|.+. .++  .+..+++|++|
T Consensus        21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~~----l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L   90 (272)
T 3rfs_A           21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQG----IQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYL   90 (272)
T ss_dssp             HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-CTT----GGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEE
T ss_pred             HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-ccc----cccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEE
Confidence            33344444444332  335677889999999998763 333    678899999999999987 444  34458899999


Q ss_pred             ecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccc
Q 036984          285 NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGY  364 (603)
Q Consensus       285 ~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  364 (603)
                      ++++|.+..+        .+..++.+++|++|++++|.+++..+..+..+++|++|++++|++++..+            
T Consensus        91 ~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------  150 (272)
T 3rfs_A           91 ILTGNQLQSL--------PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK------------  150 (272)
T ss_dssp             ECTTSCCCCC--------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------
T ss_pred             ECCCCccCcc--------ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH------------
Confidence            9988877643        34556778999999999999998888889999999999999999974333            


Q ss_pred             cCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCC
Q 036984          365 YDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITF  444 (603)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~  444 (603)
                                                   ..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..|
T Consensus       151 -----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (272)
T 3rfs_A          151 -----------------------------GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF  201 (272)
T ss_dssp             -----------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             -----------------------------HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence                                         223457899999999999998888788999999999999999998888889


Q ss_pred             cCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccC
Q 036984          445 SNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFS  495 (603)
Q Consensus       445 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~  495 (603)
                      ..+++|+.|++++|++.+.      ++.|+.++++.|.++|.+|..++.++
T Consensus       202 ~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          202 DRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             TTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             hCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCCCcccCcccccC
Confidence            9999999999999998864      55789999999999999998765554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=6.4e-23  Score=199.25  Aligned_cols=209  Identities=23%  Similarity=0.237  Sum_probs=158.3

Q ss_pred             CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcc
Q 036984          227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW  306 (603)
Q Consensus       227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~  306 (603)
                      ++|+.|++++|.+.+..+..   +..+++|++|++++|.+. .++...+..+++|++|++++|.+..+.        +..
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~   95 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA--------LGA   95 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTT---TTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEEC--------TTT
T ss_pred             CCccEEECCCCcccccCHhH---hccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccC--------hhh
Confidence            46788888888877655544   566788888888888887 555555555788888888887765443        455


Q ss_pred             ccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccC-CChhhhcccccccccCCCCCCCcCCCCCCeeEEec
Q 036984          307 IDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGH-IPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSP  385 (603)
Q Consensus       307 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (603)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|++++. +|.                                
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~--------------------------------  143 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE--------------------------------  143 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG--------------------------------
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch--------------------------------
Confidence            66688888888888888877776788888889999988888641 232                                


Q ss_pred             CCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCC----EEecccccccccCCcCCcCCCCCCEEeCCCCcCc
Q 036984          386 NGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIR----ALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH  461 (603)
Q Consensus       386 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  461 (603)
                               .+..+++|+.|++++|++++..+..+..+++|+    +|++++|.+++..+..+.. .+|++|++++|+++
T Consensus       144 ---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~  213 (276)
T 2z62_A          144 ---------YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLK  213 (276)
T ss_dssp             ---------GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCS
T ss_pred             ---------hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCcee
Confidence                     344467888899999988877777777777776    8899999998666665544 47999999999998


Q ss_pred             ccCC-CccCCCCCCceecccCcccccCCC
Q 036984          462 GKIP-QLIVLTTLAVFRVAYNNLSGKIPD  489 (603)
Q Consensus       462 ~~~~-~~~~l~~L~~L~l~~N~l~~~~p~  489 (603)
                      +..+ .+..+++|+.|++++|++.+..|.
T Consensus       214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          214 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             ecCHhHhcccccccEEEccCCcccccCCc
Confidence            6555 567889999999999999876653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=3.1e-22  Score=193.53  Aligned_cols=205  Identities=21%  Similarity=0.258  Sum_probs=160.8

Q ss_pred             CCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccc
Q 036984          228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI  307 (603)
Q Consensus       228 ~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l  307 (603)
                      +.+.++++++.++ .+|..+     .++++.|++++|.+. .++...+..+++|++|++++|.+..+.        +..+
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~-----~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~--------~~~~   81 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNI-----PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLP--------AGIF   81 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCC-----CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCC--------TTTT
T ss_pred             CCCEEEccCCCCC-ccCCCC-----CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeC--------hhhh
Confidence            4677888888776 355431     257888888888887 566655666888888888888776443        3345


Q ss_pred             cCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCC
Q 036984          308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG  387 (603)
Q Consensus       308 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (603)
                      ..+++|++|++++|.+++..+..|..+++|++|++++|++++..+                                   
T Consensus        82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------------------  126 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP-----------------------------------  126 (270)
T ss_dssp             SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-----------------------------------
T ss_pred             cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH-----------------------------------
Confidence            668889999999999887777778888999999999998874332                                   


Q ss_pred             CCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-C
Q 036984          388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-Q  466 (603)
Q Consensus       388 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~  466 (603)
                            ..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+ .
T Consensus       127 ------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          127 ------RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             ------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ------HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence                  223457789999999999987766678889999999999999997777778889999999999999986555 5


Q ss_pred             ccCCCCCCceecccCcccccCC
Q 036984          467 LIVLTTLAVFRVAYNNLSGKIP  488 (603)
Q Consensus       467 ~~~l~~L~~L~l~~N~l~~~~p  488 (603)
                      +..+++|+.|++++|++.+..+
T Consensus       201 ~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTCTTCCEEECCSSCBCCSSS
T ss_pred             hccccCCCEEEecCCCeeCCCc
Confidence            7788999999999999887654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.89  E-value=6.1e-26  Score=245.98  Aligned_cols=400  Identities=14%  Similarity=0.084  Sum_probs=243.0

Q ss_pred             hcCCCcEEEccCCcC-CCCCCCc------------cccCCCCCCCEEEccCCcCCCCccCccc--CCCCCEEEccCC-CC
Q 036984           30 LMASLRLLSLSYSRL-NKNTILD------------QGFCQLVHLQELYIRDNDLRDSLLGAWQ--TTSLQELNVASN-KL   93 (603)
Q Consensus        30 ~~~~L~~L~Ls~n~i-~~~~~~~------------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~~~L~~L~Ls~n-~l   93 (603)
                      .+++|+.|+++++.. ......+            .....+++|++|++++|.+++.....+.  +++|++|++++| .+
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            367788888877642 1111111            1123567788888888777665554442  778888888877 34


Q ss_pred             CcC-CchhhcCCCCCcEEeccCCCCccCcCccC----CCCCCCCEEEcccCc--CCccCCcccccCCCCCcEEEccCcee
Q 036984           94 TRN-FPLGLCELVLLRELYIDNNDLSGSLPLCL----TNLTSLQVLDVSYNQ--LTESISSSPLMLLTSIEELILSNNHF  166 (603)
Q Consensus        94 ~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~--i~~~~~~~~~~~l~~L~~L~l~~n~~  166 (603)
                      ... .+..+.++++|++|++++|.+++..+..+    ..+++|++|++++|.  +...........+++|++|++++|..
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            332 23334467788888888877664433332    356678888887775  22111111223457788888877621


Q ss_pred             eeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCC------CCcChhhccCCCCCEE-EcCCCcc
Q 036984          167 QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDD------GTFPKFLYHQHDLKNA-DLSHLNL  239 (603)
Q Consensus       167 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L-~L~~n~i  239 (603)
                      ... ....+.++                        ++|+.|++..+...      ..++..+.++++|+.+ .+.....
T Consensus       224 ~~~-l~~~~~~~------------------------~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~  278 (594)
T 2p1m_B          224 LEK-LATLLQRA------------------------PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP  278 (594)
T ss_dssp             HHH-HHHHHHHC------------------------TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG
T ss_pred             HHH-HHHHHhcC------------------------CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch
Confidence            101 00111122                        24555554443211      0123456778888888 3333221


Q ss_pred             cCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEecc
Q 036984          240 SGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLA  319 (603)
Q Consensus       240 ~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~  319 (603)
                       +.++..   ...+++|++|++++|.+.+.....+...+++|++|++++| +.+-       .++.....+++|++|++.
T Consensus       279 -~~l~~~---~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~-------~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          279 -AYLPAV---YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA-------GLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             -GGGGGG---HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH-------HHHHHHHHCTTCCEEEEE
T ss_pred             -hhHHHH---HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH-------HHHHHHHhCCCCCEEEEe
Confidence             122221   3357889999999888764433444456888999888876 3211       122233347888999883


Q ss_pred             C---------CcCcccCCcccc-CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCC
Q 036984          320 N---------NYIEGEIPAQLC-QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSP  389 (603)
Q Consensus       320 ~---------n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (603)
                      +         +.+++.....+. .+++|+.|+++.|.+++..+.                                    
T Consensus       347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~------------------------------------  390 (594)
T 2p1m_B          347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI------------------------------------  390 (594)
T ss_dssp             CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH------------------------------------
T ss_pred             cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH------------------------------------
Confidence            3         455433333333 478888888888877632211                                    


Q ss_pred             CCcchhhhhcccceEEECc--C----CCCcccC-----chhccCcCcCCEEecccccccccCCcCCcC-CCCCCEEeCCC
Q 036984          390 MGKEETVQILTSMSGIDLS--C----NKLTGEI-----PTQIGYLTRIRALNLSHNNLTGTIPITFSN-LKQIESLDLSY  457 (603)
Q Consensus       390 ~~~~~~~~~l~~L~~L~Ls--~----n~l~~~~-----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~  457 (603)
                          .....+++|+.|+++  +    +.+++..     +..+..+++|++|+|++ .+++..+..+.. +++|+.|++++
T Consensus       391 ----~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~  465 (594)
T 2p1m_B          391 ----TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF  465 (594)
T ss_dssp             ----HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             ----HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC
Confidence                122347899999999  4    5666322     22356789999999988 676655555554 78999999999


Q ss_pred             CcCcccCC-Cc-cCCCCCCceecccCcccccCC-CcccccCCCCcccccCCcC
Q 036984          458 NLLHGKIP-QL-IVLTTLAVFRVAYNNLSGKIP-DRVAQFSTFEEDSYEGNPF  507 (603)
Q Consensus       458 N~l~~~~~-~~-~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~l~~~~l~gn~~  507 (603)
                      |.+++... .+ ..+++|+.|++++|+++...+ .....++.++.+++++|+.
T Consensus       466 ~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             CCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            99976544 33 568999999999999965433 2345588999999999876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.4e-21  Score=190.49  Aligned_cols=205  Identities=20%  Similarity=0.206  Sum_probs=165.4

Q ss_pred             hccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCccc
Q 036984          223 LYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGS  302 (603)
Q Consensus       223 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~  302 (603)
                      +..++++++++++++.++ .+|..+     .++++.|++++|.+. .++...+..+++|+.|++++|.+..+..      
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~-----~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~------   72 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL-----PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV------   72 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC-----CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEEC------
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC-----CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccC------
Confidence            556778899999988887 455432     368899999999998 4555555568999999999988876542      


Q ss_pred             CCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeE
Q 036984          303 IPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSY  382 (603)
Q Consensus       303 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (603)
                          .+.+++|++|++++|.++ .+|..+..+++|++|++++|++++..+                              
T Consensus        73 ----~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~------------------------------  117 (290)
T 1p9a_G           73 ----DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL------------------------------  117 (290)
T ss_dssp             ----CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS------------------------------
T ss_pred             ----CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH------------------------------
Confidence                145789999999999998 567788889999999999999974332                              


Q ss_pred             EecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcc
Q 036984          383 FSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG  462 (603)
Q Consensus       383 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  462 (603)
                                 ..+..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|.++++|+.|++++|+++.
T Consensus       118 -----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  186 (290)
T 1p9a_G          118 -----------GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (290)
T ss_dssp             -----------STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             -----------HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence                       234457889999999999997777788899999999999999997777778889999999999999994


Q ss_pred             cCCCccCCCCCCceecccCccccc
Q 036984          463 KIPQLIVLTTLAVFRVAYNNLSGK  486 (603)
Q Consensus       463 ~~~~~~~l~~L~~L~l~~N~l~~~  486 (603)
                      ..+.+...++|+.+++++|++.+.
T Consensus       187 ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          187 IPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cChhhcccccCCeEEeCCCCccCc
Confidence            333777888999999999999864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=6.4e-22  Score=191.49  Aligned_cols=214  Identities=21%  Similarity=0.241  Sum_probs=166.6

Q ss_pred             CCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccc
Q 036984          228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI  307 (603)
Q Consensus       228 ~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l  307 (603)
                      .+..+++..+.+.....     ...+++|+.|++++|.+. .++.  ...+++|+.|++++|.+.++          ..+
T Consensus        20 ~l~~l~l~~~~~~~~~~-----~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~----------~~l   81 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVT-----QNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI----------SAL   81 (272)
T ss_dssp             HHHHHHHTCSCTTSEEC-----HHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC----------GGG
T ss_pred             HHHHHHhcCcccccccc-----cccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc----------hhh
Confidence            34455666665543322     567889999999999987 5553  33488999999998887543          256


Q ss_pred             cCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCC
Q 036984          308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG  387 (603)
Q Consensus       308 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (603)
                      +.+++|++|++++|.+++..+..+..+++|++|++++|++++..+                                   
T Consensus        82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----------------------------------  126 (272)
T 3rfs_A           82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD-----------------------------------  126 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-----------------------------------
T ss_pred             cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH-----------------------------------
Confidence            678999999999999998888888999999999999999874333                                   


Q ss_pred             CCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-C
Q 036984          388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-Q  466 (603)
Q Consensus       388 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~  466 (603)
                            ..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++++.++ .
T Consensus       127 ------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (272)
T 3rfs_A          127 ------GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV  200 (272)
T ss_dssp             ------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ------HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence                  223457789999999999997777778889999999999999998777778899999999999999997766 5


Q ss_pred             ccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcC
Q 036984          467 LIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF  507 (603)
Q Consensus       467 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~  507 (603)
                      +..+++|+.|++++|++.+..|       .++.+++.+|.+
T Consensus       201 ~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~  234 (272)
T 3rfs_A          201 FDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKH  234 (272)
T ss_dssp             TTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHT
T ss_pred             HhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhC
Confidence            7889999999999999886655       344444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=193.74  Aligned_cols=230  Identities=18%  Similarity=0.188  Sum_probs=119.1

Q ss_pred             cccEEeccCCCCCCCcCh---hhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCCh---hhhhc
Q 036984          204 QLTSISLSGYRDDGTFPK---FLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPV---EIGTY  277 (603)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~---~~~~~  277 (603)
                      .++.+.+..+.+......   ....+++|++|++++|.+.+..|..+.. ..+++|++|++++|.+.+..+.   ..+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE-ATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS-CCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh-ccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            456666666655422111   1223455777777777777666665211 5567777777777777643331   11123


Q ss_pred             CCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCccc--C--CccccCCCCCCEEecCCCcCccCCCh
Q 036984          278 LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGE--I--PAQLCQLKEVRLIDLSHNNLSGHIPF  353 (603)
Q Consensus       278 l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~Ls~n~l~~~~~~  353 (603)
                      +++|++|++++|.+..        ..+..++.+++|++|++++|++.+.  .  +..+..+++|++|++++|+++. ++.
T Consensus       144 ~~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~  214 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPA--------FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTG  214 (310)
T ss_dssp             CSCCCEEEEECCSSCC--------CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHH
T ss_pred             ccCCCEEEeeCCCcch--------hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHH
Confidence            5566666665555432        2234445566666666666665431  1  1223455566666666665541 110


Q ss_pred             hhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCc---CcCCEEe
Q 036984          354 CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYL---TRIRALN  430 (603)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~  430 (603)
                      .                                     ....+..+++|++|++++|.+++..|..+..+   ++|++|+
T Consensus       215 ~-------------------------------------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~  257 (310)
T 4glp_A          215 V-------------------------------------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN  257 (310)
T ss_dssp             H-------------------------------------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE
T ss_pred             H-------------------------------------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE
Confidence            0                                     00012334556666666666655544444444   4566666


Q ss_pred             cccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCccc
Q 036984          431 LSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS  484 (603)
Q Consensus       431 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~  484 (603)
                      |++|+++ .+|..+.  ++|++||+++|++++ +|.+..+++|+.|++++|+++
T Consensus       258 Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          258 LSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTTTS
T ss_pred             CCCCCCC-chhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCCCCC
Confidence            6666665 3444442  456666666666653 233445555555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=5.3e-21  Score=182.75  Aligned_cols=212  Identities=20%  Similarity=0.247  Sum_probs=165.3

Q ss_pred             CCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccC
Q 036984          254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ  333 (603)
Q Consensus       254 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  333 (603)
                      ...+.++++++.++ .+|..+.   ++++.|++++|.+..+.        +..+..+++|++|++++|.+++..+..|..
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   81 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLS--------DATFRGLTKLTWLNLDYNQLQTLSAGVFDD   81 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCC--------TTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CCCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccC--------HhHhcCcccCCEEECCCCcCCccCHhHhcc
Confidence            56789999999998 7887654   58999999988876543        455677999999999999999888888999


Q ss_pred             CCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCc
Q 036984          334 LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLT  413 (603)
Q Consensus       334 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  413 (603)
                      +++|++|++++|++++..+                                         ..+..+++|+.|++++|.++
T Consensus        82 l~~L~~L~L~~n~l~~~~~-----------------------------------------~~~~~l~~L~~L~L~~N~l~  120 (251)
T 3m19_A           82 LTELGTLGLANNQLASLPL-----------------------------------------GVFDHLTQLDKLYLGGNQLK  120 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCT-----------------------------------------TTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCCEEECCCCcccccCh-----------------------------------------hHhcccCCCCEEEcCCCcCC
Confidence            9999999999999974332                                         23445789999999999999


Q ss_pred             ccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCccc
Q 036984          414 GEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVA  492 (603)
Q Consensus       414 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~  492 (603)
                      +..+..+..+++|++|+|++|++++..+..|.++++|++|++++|++++..+ .+..+++|+.|++++|++.+...+. .
T Consensus       121 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~  199 (251)
T 3m19_A          121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEI-L  199 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTH-H
T ss_pred             CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcccc-H
Confidence            7777778999999999999999997777789999999999999999997766 7888999999999999998763331 1


Q ss_pred             ccC------CCCcccccCCcCCCCCCCCCCCCCC
Q 036984          493 QFS------TFEEDSYEGNPFLYGQPLSKSCDDN  520 (603)
Q Consensus       493 ~l~------~l~~~~l~gn~~~c~~~~~~~C~~~  520 (603)
                      .+.      .....+..|+. .|+.+....|..+
T Consensus       200 ~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~  232 (251)
T 3m19_A          200 YLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG  232 (251)
T ss_dssp             HHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             HHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence            111      11222334544 4666667778655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=6.6e-21  Score=182.08  Aligned_cols=181  Identities=22%  Similarity=0.234  Sum_probs=115.5

Q ss_pred             CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcc
Q 036984          227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW  306 (603)
Q Consensus       227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~  306 (603)
                      .+.+.++++++.+. .+|..+     .++++.|++++|.+. .++...+..+++|++|++++|.+..+        .+..
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~-----~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~   78 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGI-----PADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTL--------SAGV   78 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCC-----CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCC--------CTTT
T ss_pred             CCCeEEecCCCCcc-ccCCCC-----CCCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCcc--------CHhH
Confidence            45666777777665 344331     246777777777776 34444444467777777766665432        2344


Q ss_pred             ccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecC
Q 036984          307 IDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPN  386 (603)
Q Consensus       307 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (603)
                      +..+++|++|++++|.+++..+..|..+++|++|++++|++++..+                                  
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------------------  124 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS----------------------------------  124 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------------------------
T ss_pred             hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh----------------------------------
Confidence            5556777777777777776666666777777777777777753222                                  


Q ss_pred             CCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCccc
Q 036984          387 GSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGK  463 (603)
Q Consensus       387 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  463 (603)
                             ..+..+++|+.|++++|++++..+..+..+++|++|+|++|++++..+..|.++++|+.|++++|++++.
T Consensus       125 -------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          125 -------GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             -------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             -------hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                   1233456677777777777755555677777777777777777766666677777777777777777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.8e-22  Score=204.02  Aligned_cols=171  Identities=20%  Similarity=0.212  Sum_probs=105.7

Q ss_pred             CCccEEEccCccccccCChhhhh---c-CCCCcEEecCCCCcccccCCcCcccCCccccCCC-CCCEEeccCCcCcccCC
Q 036984          254 QKLATLDVSNNFFQGHIPVEIGT---Y-LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLP-QISYLLLANNYIEGEIP  328 (603)
Q Consensus       254 ~~L~~L~Ls~n~~~~~~~~~~~~---~-l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~  328 (603)
                      ++|++|++++|.+++..+..+..   . .++|++|++++|.+.+....    .++..+..++ +|++|++++|.+++..+
T Consensus       109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~n~l~~~~~  184 (362)
T 3goz_A          109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD----ELIQILAAIPANVNSLNLRGNNLASKNC  184 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH----HHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred             CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH----HHHHHHhcCCccccEeeecCCCCchhhH
Confidence            45666666666665322222221   1 24677777777666532211    1223334444 78888888888876665


Q ss_pred             ccc----cCC-CCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhh-cccc
Q 036984          329 AQL----CQL-KEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQI-LTSM  402 (603)
Q Consensus       329 ~~~----~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L  402 (603)
                      ..+    ..+ ++|+.|++++|.+++.....+.                                     ..+.. .++|
T Consensus       185 ~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~-------------------------------------~~l~~~~~~L  227 (362)
T 3goz_A          185 AELAKFLASIPASVTSLDLSANLLGLKSYAELA-------------------------------------YIFSSIPNHV  227 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH-------------------------------------HHHHHSCTTC
T ss_pred             HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH-------------------------------------HHHhcCCCCc
Confidence            433    344 5888888888888642221111                                     11222 3588


Q ss_pred             eEEECcCCCCcccCch----hccCcCcCCEEeccccccccc-------CCcCCcCCCCCCEEeCCCCcCcccCC
Q 036984          403 SGIDLSCNKLTGEIPT----QIGYLTRIRALNLSHNNLTGT-------IPITFSNLKQIESLDLSYNLLHGKIP  465 (603)
Q Consensus       403 ~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~  465 (603)
                      +.|+|++|.+++..+.    .+..+++|++|+|++|.+.+.       ++..+.++++|+.||+++|++.+..+
T Consensus       228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            8899998888865543    346678899999999984432       34467788889999999999886544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.2e-20  Score=185.96  Aligned_cols=195  Identities=16%  Similarity=0.265  Sum_probs=156.6

Q ss_pred             hccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCccc
Q 036984          223 LYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGS  302 (603)
Q Consensus       223 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~  302 (603)
                      ...+++|+.|++++|.+.. ++.    +..+++|+.|++++|.+. .++.  +..+++|+.|++++|.+.++.       
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~~----~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-------  101 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IEG----VQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-------  101 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CTT----GGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-------
T ss_pred             HHHcCCcCEEEeeCCCccC-chh----hhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-------
Confidence            4567888999999988864 343    677899999999999987 5655  455889999999998876542       


Q ss_pred             CCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeE
Q 036984          303 IPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSY  382 (603)
Q Consensus       303 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (603)
                         .+..+++|++|++++|.+++. + .+..+++|+.|++++|++++..                               
T Consensus       102 ---~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~-------------------------------  145 (308)
T 1h6u_A          102 ---AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNIS-------------------------------  145 (308)
T ss_dssp             ---GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG-------------------------------
T ss_pred             ---hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCc-------------------------------
Confidence               466789999999999999864 3 3888999999999999886321                               


Q ss_pred             EecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcc
Q 036984          383 FSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG  462 (603)
Q Consensus       383 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  462 (603)
                                  .+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|++++
T Consensus       146 ------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          146 ------------PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             ------------GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred             ------------cccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence                        14457889999999999985443  8889999999999999986544  7888999999999999985


Q ss_pred             cCCCccCCCCCCceecccCcccc
Q 036984          463 KIPQLIVLTTLAVFRVAYNNLSG  485 (603)
Q Consensus       463 ~~~~~~~l~~L~~L~l~~N~l~~  485 (603)
                      .. .+..+++|+.|++++|++++
T Consensus       210 ~~-~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          210 VS-PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CG-GGTTCTTCCEEEEEEEEEEC
T ss_pred             cc-cccCCCCCCEEEccCCeeec
Confidence            44 57889999999999999975

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.3e-21  Score=191.44  Aligned_cols=210  Identities=18%  Similarity=0.131  Sum_probs=129.4

Q ss_pred             CCCCCEEEccCCcCCCCccC----cccCCCCCEEEccCCCCCcCCchhh--cCCCCCcEEeccCCCCccCcC----ccCC
Q 036984           57 LVHLQELYIRDNDLRDSLLG----AWQTTSLQELNVASNKLTRNFPLGL--CELVLLRELYIDNNDLSGSLP----LCLT  126 (603)
Q Consensus        57 l~~L~~L~Ls~n~i~~~~~~----~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~~~  126 (603)
                      ...++.+.+.++.++.....    ...+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            34577888888776532211    1125679999999998888788777  888899999999998876544    3456


Q ss_pred             CCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCccccc
Q 036984          127 NLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLT  206 (603)
Q Consensus       127 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~  206 (603)
                      .+++|++|++++|.+.+ ++...+..+++|++|++++|++.+.......                     ..+...++|+
T Consensus       143 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------~~~~~l~~L~  200 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAA---------------------LCPHKFPAIQ  200 (310)
T ss_dssp             BCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTT---------------------SCTTSSCCCC
T ss_pred             hccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHH---------------------HhhhcCCCCC
Confidence            78899999999998875 4444788888999999998876432110000                     0011222556


Q ss_pred             EEeccCCCCCCCc--Ch-hhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcE
Q 036984          207 SISLSGYRDDGTF--PK-FLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMH  283 (603)
Q Consensus       207 ~L~l~~~~~~~~~--~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~  283 (603)
                      +|++++|.++...  +. .+..+++|++|++++|.+.+..|..+..+..+++|++|++++|.++ .+|..++   ++|+.
T Consensus       201 ~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~  276 (310)
T 4glp_A          201 NLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRV  276 (310)
T ss_dssp             SCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSC
T ss_pred             EEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCE
Confidence            6666666654211  11 2355566666666666666555554333333356666666666665 4554432   35555


Q ss_pred             EecCCCCcc
Q 036984          284 LNLSRNAFN  292 (603)
Q Consensus       284 L~L~~n~l~  292 (603)
                      |++++|++.
T Consensus       277 L~Ls~N~l~  285 (310)
T 4glp_A          277 LDLSSNRLN  285 (310)
T ss_dssp             EECCSCCCC
T ss_pred             EECCCCcCC
Confidence            555555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=6.3e-23  Score=207.37  Aligned_cols=267  Identities=19%  Similarity=0.197  Sum_probs=153.3

Q ss_pred             EEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCcc----Cccc-CC-CCCEEEccCCCCCcCCchhhcCC-----C
Q 036984           37 LSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLL----GAWQ-TT-SLQELNVASNKLTRNFPLGLCEL-----V  105 (603)
Q Consensus        37 L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~-~~-~L~~L~Ls~n~l~~~~~~~~~~l-----~  105 (603)
                      +++++|.+++.  .+..+...++|++|++++|.+++.+.    ..+. ++ +|++|++++|.+.+..+..+..+     +
T Consensus         3 ~~ls~n~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNP--VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCH--HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHH--HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            45566655542  22333344446666666666666555    4444 55 66666666666666555555543     6


Q ss_pred             CCcEEeccCCCCccCcCcc----CCCC-CCCCEEEcccCcCCccCCccc----ccC-CCCCcEEEccCceeeeecCcccc
Q 036984          106 LLRELYIDNNDLSGSLPLC----LTNL-TSLQVLDVSYNQLTESISSSP----LML-LTSIEELILSNNHFQIPISLEPL  175 (603)
Q Consensus       106 ~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~L~~n~i~~~~~~~~----~~~-l~~L~~L~l~~n~~~~~~~~~~l  175 (603)
                      +|++|++++|.+++..+..    +..+ ++|++|++++|.+++..+. .    +.. .++|++|++++|.+.....    
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----  155 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-EFKQAFSNLPASITSLNLRGNDLGIKSS----  155 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-HHHHHHTTSCTTCCEEECTTSCGGGSCH----
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-HHHHHHHhCCCceeEEEccCCcCCHHHH----
Confidence            6666666666666544442    2333 5666666666666532221 2    222 2456666666665441110    


Q ss_pred             CCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCC-CCCEEEcCCCcccCCCCCCCc-ccccc
Q 036984          176 SNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQH-DLKNADLSHLNLSGEFPNWLM-PIHCL  253 (603)
Q Consensus       176 ~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~-~~~~l  253 (603)
                                                               ..++..+...+ +|+.|++++|.+++..+..+. .+..+
T Consensus       156 -----------------------------------------~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~  194 (362)
T 3goz_A          156 -----------------------------------------DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI  194 (362)
T ss_dssp             -----------------------------------------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred             -----------------------------------------HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhC
Confidence                                                     01122333343 677777777776654433211 12334


Q ss_pred             -CCccEEEccCcccccc----CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccC-
Q 036984          254 -QKLATLDVSNNFFQGH----IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEI-  327 (603)
Q Consensus       254 -~~L~~L~Ls~n~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-  327 (603)
                       ++|++|++++|.+.+.    ++..+....++|++|++++|.+.+.+...    +...+..+++|++|++++|.+.+.. 
T Consensus       195 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----l~~~~~~l~~L~~L~L~~n~l~~i~~  270 (362)
T 3goz_A          195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN----LKLLKDSLKHLQTVYLDYDIVKNMSK  270 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH----HHHTTTTTTTCSEEEEEHHHHTTCCH
T ss_pred             CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH----HHHHHhcCCCccEEEeccCCccccCH
Confidence             4788888888887632    33344443458888888888776543211    1234456788999999999854433 


Q ss_pred             ------CccccCCCCCCEEecCCCcCccCCChhh
Q 036984          328 ------PAQLCQLKEVRLIDLSHNNLSGHIPFCL  355 (603)
Q Consensus       328 ------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  355 (603)
                            +..+..+++|+.||+++|++....+..+
T Consensus       271 ~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~  304 (362)
T 3goz_A          271 EQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI  304 (362)
T ss_dssp             HHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred             HHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence                  3356778899999999999986655433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=6.7e-21  Score=180.69  Aligned_cols=195  Identities=15%  Similarity=0.210  Sum_probs=108.6

Q ss_pred             CccEEEccCccccccCChhhhhcCCCCcEEecCCCC-cccccCCcCcccCCccccCCCCCCEEeccC-CcCcccCCcccc
Q 036984          255 KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNA-FNDLSYNRLQGSIPNWIDRLPQISYLLLAN-NYIEGEIPAQLC  332 (603)
Q Consensus       255 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~  332 (603)
                      +++.|++++|.++ .++...+..+++|++|++++|. +..+.        +..+..+++|++|++++ |.+++..+..|.
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~--------~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~  102 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLE--------SHSFYNLSKVTHIEIRNTRNLTYIDPDALK  102 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEEC--------TTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeC--------HhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence            5566666666665 4444444445666666666554 43332        22344466666666665 666655555666


Q ss_pred             CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccce---EEECcC
Q 036984          333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMS---GIDLSC  409 (603)
Q Consensus       333 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~---~L~Ls~  409 (603)
                      .+++|++|++++|++++ +|.                                          +..+++|+   .|++++
T Consensus       103 ~l~~L~~L~l~~n~l~~-lp~------------------------------------------~~~l~~L~~L~~L~l~~  139 (239)
T 2xwt_C          103 ELPLLKFLGIFNTGLKM-FPD------------------------------------------LTKVYSTDIFFILEITD  139 (239)
T ss_dssp             CCTTCCEEEEEEECCCS-CCC------------------------------------------CTTCCBCCSEEEEEEES
T ss_pred             CCCCCCEEeCCCCCCcc-ccc------------------------------------------cccccccccccEEECCC
Confidence            66666666666666653 221                                          11233333   666666


Q ss_pred             C-CCcccCchhccCcCcCC-EEecccccccccCCcCCcCCCCCCEEeCCCCc-CcccCC-CccCC-CCCCceecccCccc
Q 036984          410 N-KLTGEIPTQIGYLTRIR-ALNLSHNNLTGTIPITFSNLKQIESLDLSYNL-LHGKIP-QLIVL-TTLAVFRVAYNNLS  484 (603)
Q Consensus       410 n-~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~l-~~L~~L~l~~N~l~  484 (603)
                      | .+++..+..|..+++|+ +|++++|+++...+..|.. ++|++|++++|+ +++..+ .+..+ ++|+.|++++|+++
T Consensus       140 N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             CTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            6 66655555566666666 6666666666333334443 566666666663 664434 45556 66666666666666


Q ss_pred             ccCCCcccccCCCCcccccCC
Q 036984          485 GKIPDRVAQFSTFEEDSYEGN  505 (603)
Q Consensus       485 ~~~p~~~~~l~~l~~~~l~gn  505 (603)
                      + +|..  .++.++.+.++++
T Consensus       219 ~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          219 A-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             C-CCCT--TCTTCSEEECTTC
T ss_pred             c-CChh--HhccCceeeccCc
Confidence            3 3332  4555555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=7.7e-23  Score=208.88  Aligned_cols=44  Identities=14%  Similarity=0.080  Sum_probs=23.5

Q ss_pred             CchhhcCCCCCcEEeccCCCCccCcC----ccCCCCCCCCEEEcccCc
Q 036984           97 FPLGLCELVLLRELYIDNNDLSGSLP----LCLTNLTSLQVLDVSYNQ  140 (603)
Q Consensus        97 ~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~  140 (603)
                      ++..+..+++|++|+|++|.++...+    ..+.++++|++|+|++|.
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~   71 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF   71 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccc
Confidence            33445555666666666666554322    235555566666665543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=2.5e-22  Score=201.12  Aligned_cols=258  Identities=17%  Similarity=0.166  Sum_probs=164.1

Q ss_pred             CCCcEEEccCCcCCCCCCCccccCCC--CCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcC-CchhhcCCCCCc
Q 036984           32 ASLRLLSLSYSRLNKNTILDQGFCQL--VHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRN-FPLGLCELVLLR  108 (603)
Q Consensus        32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~  108 (603)
                      ..++.++++++.+..     ..+..+  ++++.|++++|.+.+..+..+.+++|++|++++|.+.+. .+..+..+++|+
T Consensus        47 ~~~~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCCH-----HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hhheeeccccccCCH-----HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            457788887776652     345555  777888888887777777666677888888888877654 566677777888


Q ss_pred             EEeccCCCCccCcCccCCCCCCCCEEEcccC-cCCcc-CCcccccCCCCCcEEEccCc-eeeeecCccccCCCCCCceee
Q 036984          109 ELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN-QLTES-ISSSPLMLLTSIEELILSNN-HFQIPISLEPLSNLSKLKAFN  185 (603)
Q Consensus       109 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~l~~L~~L~~l~  185 (603)
                      +|++++|.+++..+..++++++|++|++++| .+++. ++. .+..+++|++|++++| .++..                
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~----------------  184 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEK----------------  184 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHH----------------
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChH----------------
Confidence            8888888777666677777778888888777 55532 333 4566677777777766 44311                


Q ss_pred             ccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCC-CCCEEEcCCCc--cc-CCCCCCCccccccCCccEEEc
Q 036984          186 GEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQH-DLKNADLSHLN--LS-GEFPNWLMPIHCLQKLATLDV  261 (603)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~--i~-~~~~~~~~~~~~l~~L~~L~L  261 (603)
                                                      ..+..+..++ +|+.|++++|.  ++ +.++..   +..+++|+.|++
T Consensus       185 --------------------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~---~~~~~~L~~L~l  229 (336)
T 2ast_B          185 --------------------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL---VRRCPNLVHLDL  229 (336)
T ss_dssp             --------------------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH---HHHCTTCSEEEC
T ss_pred             --------------------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH---HhhCCCCCEEeC
Confidence                                            1234455666 77777777773  33 222322   455777788888


Q ss_pred             cCcc-ccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEE
Q 036984          262 SNNF-FQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLI  340 (603)
Q Consensus       262 s~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  340 (603)
                      ++|. +++..+..+.. +++|++|++++|.  .+..     .....++.+++|++|++++| ++......+.  ..++.|
T Consensus       230 ~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~--~~~~-----~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L  298 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQ-LNYLQHLSLSRCY--DIIP-----ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHL  298 (336)
T ss_dssp             TTCTTCCGGGGGGGGG-CTTCCEEECTTCT--TCCG-----GGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTS
T ss_pred             CCCCcCCHHHHHHHhC-CCCCCEeeCCCCC--CCCH-----HHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcce
Confidence            7777 55444444443 6788888887774  1110     11124556788888888888 4432222221  236666


Q ss_pred             ecCCCcCccCCChhhhc
Q 036984          341 DLSHNNLSGHIPFCLVN  357 (603)
Q Consensus       341 ~Ls~n~l~~~~~~~~~~  357 (603)
                      ++++|++++..|..++.
T Consensus       299 ~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          299 QINCSHFTTIARPTIGN  315 (336)
T ss_dssp             EESCCCSCCTTCSSCSS
T ss_pred             EEecccCccccCCcccc
Confidence            68888888777765544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2.1e-20  Score=184.04  Aligned_cols=195  Identities=22%  Similarity=0.320  Sum_probs=166.0

Q ss_pred             ccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCc
Q 036984          250 IHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPA  329 (603)
Q Consensus       250 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  329 (603)
                      ...+++|++|++++|.+. .++ . +..+++|+.|++++|.+.++.         . +..+++|++|++++|.+++.  .
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~-~~~l~~L~~L~L~~n~i~~~~---------~-~~~l~~L~~L~L~~n~l~~~--~  101 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLA---------P-LKNLTKITELELSGNPLKNV--S  101 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCG---------G-GTTCCSCCEEECCSCCCSCC--G
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch-h-hhccCCCCEEEccCCcCCCCh---------h-HccCCCCCEEEccCCcCCCc--h
Confidence            456889999999999998 666 3 345899999999999887543         2 67799999999999999864  3


Q ss_pred             cccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcC
Q 036984          330 QLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSC  409 (603)
Q Consensus       330 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  409 (603)
                      .+..+++|+.|++++|++++. +                                          .+..+++|+.|++++
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~~-~------------------------------------------~l~~l~~L~~L~l~~  138 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITDV-T------------------------------------------PLAGLSNLQVLYLDL  138 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCCC-G------------------------------------------GGTTCTTCCEEECCS
T ss_pred             hhcCCCCCCEEECCCCCCCCc-h------------------------------------------hhcCCCCCCEEECCC
Confidence            689999999999999999731 1                                          245578999999999


Q ss_pred             CCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCC
Q 036984          410 NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPD  489 (603)
Q Consensus       410 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  489 (603)
                      |.+++..+  +..+++|++|++++|.+++..+  +.++++|+.|++++|++++ ++.+..+++|++|++++|++++..| 
T Consensus       139 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~-  212 (308)
T 1h6u_A          139 NQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVSP-  212 (308)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCCCBCGG-
T ss_pred             CccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc-ChhhcCCCCCCEEEccCCccCcccc-
Confidence            99996544  8899999999999999996544  8899999999999999995 4458889999999999999997654 


Q ss_pred             cccccCCCCcccccCCcCCC
Q 036984          490 RVAQFSTFEEDSYEGNPFLY  509 (603)
Q Consensus       490 ~~~~l~~l~~~~l~gn~~~c  509 (603)
                       +..++.++.+++++|++.+
T Consensus       213 -l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          213 -LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             -GTTCTTCCEEEEEEEEEEC
T ss_pred             -ccCCCCCCEEEccCCeeec
Confidence             7889999999999999865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=8.9e-21  Score=179.83  Aligned_cols=198  Identities=17%  Similarity=0.187  Sum_probs=162.1

Q ss_pred             CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcc-ccccCChhhhhcCCCCcEEecCC-CCcccccCCcCcccCC
Q 036984          227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNF-FQGHIPVEIGTYLPGLMHLNLSR-NAFNDLSYNRLQGSIP  304 (603)
Q Consensus       227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~~~  304 (603)
                      ++++.|++++|++++..+..   +..+++|++|++++|. ++ .++...+..+++|++|++++ |.+..+.        +
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~---~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~--------~   98 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHA---FSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYID--------P   98 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTT---TTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEEC--------T
T ss_pred             CcccEEEEeCCcceEECHHH---ccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcC--------H
Confidence            38999999999998766655   6779999999999997 87 77777777799999999998 8776543        4


Q ss_pred             ccccCCCCCCEEeccCCcCcccCCccccCCCCCC---EEecCCC-cCccCCChhhhcccccccccCCCCCCCcCCCCCCe
Q 036984          305 NWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVR---LIDLSHN-NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPAL  380 (603)
Q Consensus       305 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (603)
                      ..+..+++|++|++++|.+++ +|. +..+++|+   +|++++| .+++..+                            
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~----------------------------  148 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV----------------------------  148 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT----------------------------
T ss_pred             HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc----------------------------
Confidence            567779999999999999986 554 88889998   9999999 8863222                            


Q ss_pred             eEEecCCCCCCcchhhhhcccce-EEECcCCCCcccCchhccCcCcCCEEeccccc-ccccCCcCCcCC-CCCCEEeCCC
Q 036984          381 SYFSPNGSPMGKEETVQILTSMS-GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN-LTGTIPITFSNL-KQIESLDLSY  457 (603)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~Ls~  457 (603)
                                   ..+..+++|+ .|++++|+++...+..+.. ++|++|++++|+ +++..+..|.++ ++|+.||+++
T Consensus       149 -------------~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          149 -------------NAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             -------------TTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             -------------ccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence                         2345578999 9999999999555545555 899999999995 997778889999 9999999999


Q ss_pred             CcCcccCCCccCCCCCCceecccCc
Q 036984          458 NLLHGKIPQLIVLTTLAVFRVAYNN  482 (603)
Q Consensus       458 N~l~~~~~~~~~l~~L~~L~l~~N~  482 (603)
                      |++++..+.  .+++|+.|+++++.
T Consensus       215 N~l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          215 TSVTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCCCCCT--TCTTCSEEECTTC-
T ss_pred             CccccCChh--HhccCceeeccCcc
Confidence            999944334  68899999998763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=5.4e-22  Score=202.58  Aligned_cols=249  Identities=20%  Similarity=0.300  Sum_probs=143.9

Q ss_pred             cChhhccCCCCCEEEcCCCcccCCCCCCCc-cccccCCccEEEccCcc---ccccCChhh------hhcCCCCcEEecCC
Q 036984          219 FPKFLYHQHDLKNADLSHLNLSGEFPNWLM-PIHCLQKLATLDVSNNF---FQGHIPVEI------GTYLPGLMHLNLSR  288 (603)
Q Consensus       219 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~~~~l~~L~~L~Ls~n~---~~~~~~~~~------~~~l~~L~~L~L~~  288 (603)
                      ++..+..+++|+.|++++|.+.+..+..+. .+..+++|++|++++|.   +.+.+|..+      +..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            455667777788888888777654222110 14457778888887753   333444443      23467888888877


Q ss_pred             CCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCcccc----CC---------CCCCEEecCCCcCcc-CCChh
Q 036984          289 NAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLC----QL---------KEVRLIDLSHNNLSG-HIPFC  354 (603)
Q Consensus       289 n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~Ls~n~l~~-~~~~~  354 (603)
                      |.+.+.+.    ..+|..+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|+++. .+|. 
T Consensus       104 n~l~~~~~----~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-  178 (386)
T 2ca6_A          104 NAFGPTAQ----EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE-  178 (386)
T ss_dssp             CCCCTTTH----HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH-
T ss_pred             CcCCHHHH----HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH-
Confidence            76643110    02445566678888888888887644333333    33         788888888888762 2221 


Q ss_pred             hhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcc-----cCchhccCcCcCCEE
Q 036984          355 LVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG-----EIPTQIGYLTRIRAL  429 (603)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L  429 (603)
                      +                                     ...+..+++|+.|++++|.++.     ..+..+..+++|++|
T Consensus       179 l-------------------------------------~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L  221 (386)
T 2ca6_A          179 W-------------------------------------AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL  221 (386)
T ss_dssp             H-------------------------------------HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEE
T ss_pred             H-------------------------------------HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEE
Confidence            0                                     0123345566666666666652     122245566666666


Q ss_pred             eccccccc----ccCCcCCcCCCCCCEEeCCCCcCccc----CC-Cc--cCCCCCCceecccCcccc----cCCCcc-cc
Q 036984          430 NLSHNNLT----GTIPITFSNLKQIESLDLSYNLLHGK----IP-QL--IVLTTLAVFRVAYNNLSG----KIPDRV-AQ  493 (603)
Q Consensus       430 ~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~-~~--~~l~~L~~L~l~~N~l~~----~~p~~~-~~  493 (603)
                      +|++|.++    ..+|..+..+++|++|++++|.+++.    ++ .+  ..+++|++|++++|.++.    .+|..+ ..
T Consensus       222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~  301 (386)
T 2ca6_A          222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK  301 (386)
T ss_dssp             ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred             ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence            66666664    34555556666666666666666543    22 33  225666666666666665    355544 33


Q ss_pred             cCCCCcccccCCcCCC
Q 036984          494 FSTFEEDSYEGNPFLY  509 (603)
Q Consensus       494 l~~l~~~~l~gn~~~c  509 (603)
                      ++.++.+++++|++..
T Consensus       302 l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          302 MPDLLFLELNGNRFSE  317 (386)
T ss_dssp             CTTCCEEECTTSBSCT
T ss_pred             CCCceEEEccCCcCCc
Confidence            5666666666666544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=8.2e-21  Score=190.09  Aligned_cols=245  Identities=15%  Similarity=0.164  Sum_probs=172.2

Q ss_pred             cccEEeccCCCCCCCcChhhccC--CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccccc-CChhhhhcCCC
Q 036984          204 QLTSISLSGYRDDGTFPKFLYHQ--HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGH-IPVEIGTYLPG  280 (603)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~~~l~~  280 (603)
                      .++.++++++.+.   +..+..+  ++++.+++++|.+.+..+.    +..+++|++|++++|.+.+. ++. .+..+++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~  119 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE----HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSK  119 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS----CCCCBCCCEEECTTCEECHHHHHH-HHTTBCC
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh----hccCCCCCEEEccCCCcCHHHHHH-HHhhCCC
Confidence            4778888887765   4556666  7899999999988877665    34678899999999988644 443 3445889


Q ss_pred             CcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCC-cCccc-CCccccCCCCCCEEecCCC-cCccC-CChhhh
Q 036984          281 LMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANN-YIEGE-IPAQLCQLKEVRLIDLSHN-NLSGH-IPFCLV  356 (603)
Q Consensus       281 L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~  356 (603)
                      |++|++++|.+.+        ..+..++.+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++    
T Consensus       120 L~~L~L~~~~l~~--------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~----  187 (336)
T 2ast_B          120 LQNLSLEGLRLSD--------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ----  187 (336)
T ss_dssp             CSEEECTTCBCCH--------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH----
T ss_pred             CCEEeCcCcccCH--------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH----
Confidence            9998888876543        34556677889999999998 67653 5566778889999999998 77632 12    


Q ss_pred             cccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcc-cceEEECcCC--CCc-ccCchhccCcCcCCEEecc
Q 036984          357 NTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILT-SMSGIDLSCN--KLT-GEIPTQIGYLTRIRALNLS  432 (603)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~Ls  432 (603)
                                                           ..+..++ +|++|++++|  .++ +.++..+..+++|++|+++
T Consensus       188 -------------------------------------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~  230 (336)
T 2ast_B          188 -------------------------------------VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  230 (336)
T ss_dssp             -------------------------------------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             -------------------------------------HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence                                                 2344566 8888888888  454 3456666778888888888


Q ss_pred             ccc-ccccCCcCCcCCCCCCEEeCCCCc-CcccCC-CccCCCCCCceecccCcccccCCCcccccC-CCCcccccCCcCC
Q 036984          433 HNN-LTGTIPITFSNLKQIESLDLSYNL-LHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFS-TFEEDSYEGNPFL  508 (603)
Q Consensus       433 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~l~~~~l~gn~~~  508 (603)
                      +|. +++..+..+.++++|++|++++|. +..... .+..+++|+.|++++| +.   ...+..+. .+..+++++|.+.
T Consensus       231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~  306 (336)
T 2ast_B          231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFT  306 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSC
T ss_pred             CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCc
Confidence            888 666667777888888888888885 322111 4667888888888887 22   12333342 3666667666654


Q ss_pred             C
Q 036984          509 Y  509 (603)
Q Consensus       509 c  509 (603)
                      .
T Consensus       307 ~  307 (336)
T 2ast_B          307 T  307 (336)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.5e-19  Score=167.45  Aligned_cols=181  Identities=19%  Similarity=0.236  Sum_probs=142.3

Q ss_pred             cEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCC
Q 036984          257 ATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKE  336 (603)
Q Consensus       257 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  336 (603)
                      +.++.+++.+. .+|..+   .++|++|++++|.+..+.        +..++.+++|++|++++|++++..+..|..+++
T Consensus        10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLP--------NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS   77 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCC--------TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCC--------hhhhcccccCcEEECCCCccCccChhhcCCCCC
Confidence            45667777776 566544   347788777777665332        344566888888888888888777777888899


Q ss_pred             CCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccC
Q 036984          337 VRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEI  416 (603)
Q Consensus       337 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  416 (603)
                      |++|++++|++++..+                                         ..+..+++|+.|++++|.+++..
T Consensus        78 L~~L~Ls~n~l~~~~~-----------------------------------------~~~~~l~~L~~L~L~~N~l~~~~  116 (208)
T 2o6s_A           78 LTYLNLSTNQLQSLPN-----------------------------------------GVFDKLTQLKELALNTNQLQSLP  116 (208)
T ss_dssp             CCEEECCSSCCCCCCT-----------------------------------------TTTTTCTTCCEEECCSSCCCCCC
T ss_pred             cCEEECCCCcCCccCH-----------------------------------------hHhcCccCCCEEEcCCCcCcccC
Confidence            9999999998873322                                         22345778999999999998777


Q ss_pred             chhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCC
Q 036984          417 PTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFST  496 (603)
Q Consensus       417 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~  496 (603)
                      +..+..+++|++|++++|++++..+..|..+++|++|++++|++.+.      +++|++|+++.|+++|.+|..++.++.
T Consensus       117 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             HhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC------CCCHHHHHHHHHhCCceeeccCccccC
Confidence            77789999999999999999977777789999999999999988753      568899999999999999987765543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=3.1e-19  Score=179.34  Aligned_cols=226  Identities=20%  Similarity=0.152  Sum_probs=120.8

Q ss_pred             CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcE-EecCCCCcccccCCcCcccCCc
Q 036984          227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMH-LNLSRNAFNDLSYNRLQGSIPN  305 (603)
Q Consensus       227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~-L~L~~n~l~~l~~~~~~~~~~~  305 (603)
                      +++++|+|++|+++...+..   +.++++|++|+|++|.+.+.+|...|..+++++. +.++.|++..        ..|.
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~---f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~--------l~~~   98 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGA---FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY--------INPE   98 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTS---STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE--------ECTT
T ss_pred             CCCCEEEccCCcCCCcCHHH---HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc--------cCch
Confidence            35666666666665333333   4556666666666666544555555555555544 2333333332        2244


Q ss_pred             cccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCC-cCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEe
Q 036984          306 WIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN-NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFS  384 (603)
Q Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (603)
                      .+..+++|++|++++|.+....+..+....++..+++.++ .+. .++                                
T Consensus        99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~--------------------------------  145 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIE--------------------------------  145 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EEC--------------------------------
T ss_pred             hhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-ccc--------------------------------
Confidence            4555666666666666665555545555555556665442 332 111                                


Q ss_pred             cCCCCCCcchhhhh-cccceEEECcCCCCcccCchhccCcCcCCEEeccc-ccccccCCcCCcCCCCCCEEeCCCCcCcc
Q 036984          385 PNGSPMGKEETVQI-LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH-NNLTGTIPITFSNLKQIESLDLSYNLLHG  462 (603)
Q Consensus       385 ~~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  462 (603)
                              ...+.. ...++.|++++|+++.. +......++|++|++++ |.++.+.++.|.++++|++||+++|+|+.
T Consensus       146 --------~~~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          146 --------RNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             --------TTSSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred             --------ccchhhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence                    111112 23566777777777743 33333456677777764 55664444567777777777777777773


Q ss_pred             cCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984          463 KIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY  509 (603)
Q Consensus       463 ~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c  509 (603)
                      ..+.  .+.+|+.|.+.++.--+.+|. +..++.++.+++. +++.|
T Consensus       217 lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~-~~~~c  259 (350)
T 4ay9_X          217 LPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT-YPSHC  259 (350)
T ss_dssp             CCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS-CHHHH
T ss_pred             cChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCC-CCccc
Confidence            3331  133444444444433345564 5666677666664 44444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=1.7e-18  Score=173.88  Aligned_cols=239  Identities=18%  Similarity=0.158  Sum_probs=138.3

Q ss_pred             cEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCC-chhhcCCCCCcE-Ee
Q 036984           35 RLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNF-PLGLCELVLLRE-LY  111 (603)
Q Consensus        35 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~-L~  111 (603)
                      ++++.++++++.   +|..+  .+++++|+|++|+|+.+++++|. +++|++|+|++|++.+.+ +..|.+++++++ +.
T Consensus        12 ~~v~C~~~~Lt~---iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLCQESKVTE---IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TEEEEESTTCCS---CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CEEEecCCCCCc---cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            345556655553   22222  24566666666666666666665 666666666666654433 345566666554 44


Q ss_pred             ccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCc-eeeeecCccccCCCCCCceeecccee
Q 036984          112 IDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNN-HFQIPISLEPLSNLSKLKAFNGEIYL  190 (603)
Q Consensus       112 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~l~~L~~L~~l~~~~~~  190 (603)
                      +++|+++.+.|.+|.++++|++|++++|.+.. ++...+....++..+++.++ .+.                       
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~-----------------------  142 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIH-----------------------  142 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCC-----------------------
T ss_pred             ccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccc-----------------------
Confidence            45566665556666666666666666666653 33334444445555555432 221                       


Q ss_pred             eeccCCCCCCCcccccEEeccCCCCCCCcChhhccC-CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccC-ccccc
Q 036984          191 ETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQ-HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSN-NFFQG  268 (603)
Q Consensus       191 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~-n~~~~  268 (603)
                                                ...+..+..+ ..++.|++++|.+....+..    ....+|+.+++++ |.+. 
T Consensus       143 --------------------------~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~----f~~~~L~~l~l~~~n~l~-  191 (350)
T 4ay9_X          143 --------------------------TIERNSFVGLSFESVILWLNKNGIQEIHNSA----FNGTQLDELNLSDNNNLE-  191 (350)
T ss_dssp             --------------------------EECTTSSTTSBSSCEEEECCSSCCCEECTTS----STTEEEEEEECTTCTTCC-
T ss_pred             --------------------------cccccchhhcchhhhhhccccccccCCChhh----ccccchhHHhhccCCccc-
Confidence                                      1111222222 24667777777776433332    2345688888875 4554 


Q ss_pred             cCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCC
Q 036984          269 HIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN  345 (603)
Q Consensus       269 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  345 (603)
                      .+|...|..+++|+.|++++|++..+...           .+.+|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus       192 ~i~~~~f~~l~~L~~LdLs~N~l~~lp~~-----------~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          192 ELPNDVFHGASGPVILDISRTRIHSLPSY-----------GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCTTTTTTEECCSEEECTTSCCCCCCSS-----------SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             CCCHHHhccCcccchhhcCCCCcCccChh-----------hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            78877777788888888888877655421           13456666655543333555 4778888999998754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=4.7e-19  Score=165.20  Aligned_cols=134  Identities=25%  Similarity=0.253  Sum_probs=87.7

Q ss_pred             CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCC
Q 036984          311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPM  390 (603)
Q Consensus       311 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (603)
                      +++++|++++|.++++.+..|..+++|+.|++++|++++..|.                                     
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-------------------------------------   74 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD-------------------------------------   74 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT-------------------------------------
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH-------------------------------------
Confidence            5677777777777766666777777777777777777643332                                     


Q ss_pred             CcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccC
Q 036984          391 GKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIV  469 (603)
Q Consensus       391 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~  469 (603)
                          .+..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..|..|.++++|+.|++++|++++..+ .+..
T Consensus        75 ----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  150 (220)
T 2v9t_B           75 ----AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP  150 (220)
T ss_dssp             ----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ----HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence                22335567777777777765555556666777777777777766666666666777777777777665444 4556


Q ss_pred             CCCCCceecccCcccc
Q 036984          470 LTTLAVFRVAYNNLSG  485 (603)
Q Consensus       470 l~~L~~L~l~~N~l~~  485 (603)
                      +++|+.|++++|++.+
T Consensus       151 l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          151 LRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CTTCCEEECCSSCEEC
T ss_pred             CCCCCEEEeCCCCcCC
Confidence            6666666666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=6.4e-19  Score=164.31  Aligned_cols=155  Identities=20%  Similarity=0.216  Sum_probs=101.8

Q ss_pred             cEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCC-ccccCCCCCCEEecCCCcCccCCChhhhcccc
Q 036984          282 MHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPFCLVNTAL  360 (603)
Q Consensus       282 ~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  360 (603)
                      +.+++++|.+..+         |..+  .+.+++|++++|.+++..+ ..|..+++|+.|++++|++++..+        
T Consensus        14 ~~l~~s~n~l~~i---------P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~--------   74 (220)
T 2v70_A           14 TTVDCSNQKLNKI---------PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE--------   74 (220)
T ss_dssp             TEEECCSSCCSSC---------CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT--------
T ss_pred             CEeEeCCCCcccC---------ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH--------
Confidence            4666666655432         3322  2345777777777776643 446777777777777777763322        


Q ss_pred             cccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccC
Q 036984          361 SEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI  440 (603)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  440 (603)
                                                       ..+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..
T Consensus        75 ---------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  121 (220)
T 2v70_A           75 ---------------------------------GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG  121 (220)
T ss_dssp             ---------------------------------TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred             ---------------------------------HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence                                             12334567777777777777666666777777777777777777666


Q ss_pred             CcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCC
Q 036984          441 PITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIP  488 (603)
Q Consensus       441 ~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p  488 (603)
                      |..|.++++|++|++++|++++..| .+..+++|+.|++++|++.+..+
T Consensus       122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            7777777777777777777776655 66667777777777777766444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=3.3e-19  Score=179.79  Aligned_cols=178  Identities=22%  Similarity=0.228  Sum_probs=127.1

Q ss_pred             ccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcccc-CCCCCCEEeccCCcCcccCCccccCC
Q 036984          256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID-RLPQISYLLLANNYIEGEIPAQLCQL  334 (603)
Q Consensus       256 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l  334 (603)
                      -+.++++++.+. .+|..+.   +.++.|+|++|.+..+.        +..+. .+++|++|++++|.++++.+..|..+
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~--------~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l   87 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLR--------AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV   87 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEEC--------TTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccC--------hhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence            367889988887 7887654   36788888888776544        33344 57888888888888887777788888


Q ss_pred             CCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcc
Q 036984          335 KEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG  414 (603)
Q Consensus       335 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  414 (603)
                      ++|++|+|++|++++..+                                         ..+..+++|+.|+|++|.+++
T Consensus        88 ~~L~~L~Ls~N~l~~~~~-----------------------------------------~~~~~l~~L~~L~L~~N~i~~  126 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDE-----------------------------------------FLFSDLQALEVLLLYNNHIVV  126 (361)
T ss_dssp             TTCCEEECCSSCCCEECT-----------------------------------------TTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCEEECCCCcCCcCCH-----------------------------------------HHhCCCcCCCEEECCCCcccE
Confidence            888888888888863222                                         223446778888888888887


Q ss_pred             cCchhccCcCcCCEEecccccccccCCcCC---cCCCCCCEEeCCCCcCcccCC-CccCCCC--CCceecccCccccc
Q 036984          415 EIPTQIGYLTRIRALNLSHNNLTGTIPITF---SNLKQIESLDLSYNLLHGKIP-QLIVLTT--LAVFRVAYNNLSGK  486 (603)
Q Consensus       415 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~--L~~L~l~~N~l~~~  486 (603)
                      ..+..|..+++|++|+|++|++++..+..|   ..+++|+.||+++|++++..+ .+..++.  ++.|++++|++.+.
T Consensus       127 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            777778888888888888888875544445   457788888888888874333 4555655  36777777777653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=2.2e-18  Score=168.13  Aligned_cols=173  Identities=24%  Similarity=0.387  Sum_probs=116.9

Q ss_pred             ccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCc
Q 036984          250 IHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPA  329 (603)
Q Consensus       250 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  329 (603)
                      ...+++|+.|++++|.+. .++.  +..+++|+.|++++|.+.++.         . +..+++|++|++++|.+++.  .
T Consensus        42 ~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~---------~-l~~l~~L~~L~l~~n~l~~~--~  106 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIK---------P-LANLKNLGWLFLDENKVKDL--S  106 (291)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG---------G-GTTCTTCCEEECCSSCCCCG--G
T ss_pred             hhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCc---------c-cccCCCCCEEECCCCcCCCC--h
Confidence            345566666666666665 4442  233667777776666655332         1 45567777777777777642  2


Q ss_pred             cccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcC
Q 036984          330 QLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSC  409 (603)
Q Consensus       330 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  409 (603)
                      .+..+++|++|++++|++++.                                           ..+..+++|+.|++++
T Consensus       107 ~l~~l~~L~~L~L~~n~i~~~-------------------------------------------~~l~~l~~L~~L~l~~  143 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEHNGISDI-------------------------------------------NGLVHLPQLESLYLGN  143 (291)
T ss_dssp             GGTTCTTCCEEECTTSCCCCC-------------------------------------------GGGGGCTTCCEEECCS
T ss_pred             hhccCCCCCEEECCCCcCCCC-------------------------------------------hhhcCCCCCCEEEccC
Confidence            367777777777777777521                                           1234466777788887


Q ss_pred             CCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccc
Q 036984          410 NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSG  485 (603)
Q Consensus       410 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~  485 (603)
                      |.+++.  ..+..+++|++|++++|++++..+  +..+++|+.|++++|.+++ ++.+..+++|+.|++++|+++.
T Consensus       144 n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          144 NKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEEC
T ss_pred             CcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccC
Confidence            777744  467778888888888888875544  7778888888888888874 4567778888888888888774

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=6.1e-19  Score=163.26  Aligned_cols=136  Identities=27%  Similarity=0.314  Sum_probs=89.8

Q ss_pred             HhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCC
Q 036984           29 ELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLL  107 (603)
Q Consensus        29 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (603)
                      ..+++|++|++++|.++..  .+..|..+++|++|++++|.++.+++..|. +++|++|++++|.+++..+..|.++++|
T Consensus        25 ~~~~~l~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  102 (208)
T 2o6s_A           25 GIPAQTTYLDLETNSLKSL--PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL  102 (208)
T ss_dssp             CCCTTCSEEECCSSCCCCC--CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCCcEEEcCCCccCcC--ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence            3355677777777776642  234466677777777777777776666665 6777777777777776555556677777


Q ss_pred             cEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceee
Q 036984          108 RELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ  167 (603)
Q Consensus       108 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~  167 (603)
                      ++|++++|++++..+..|.++++|++|++++|.+++ ++...+..+++|++|++++|++.
T Consensus       103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCee
Confidence            777777777766555556677777777777777763 44435666677777777776543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=7.8e-19  Score=185.45  Aligned_cols=187  Identities=24%  Similarity=0.373  Sum_probs=149.7

Q ss_pred             CCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccc
Q 036984          228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI  307 (603)
Q Consensus       228 ~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l  307 (603)
                      +++.|++++|.+++ +|..+     .++|+.|++++|.++ .+|    ..+++|+.|++++|.+..+         |. +
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l-----~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~i---------p~-l  118 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL-----PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTL---------PE-L  118 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC-----CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCC---------CC-C
T ss_pred             CccEEEeCCCCCCc-cCHhH-----cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCc---------ch-h
Confidence            89999999999886 66542     378999999999998 788    2368999999998877643         33 3


Q ss_pred             cCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCC
Q 036984          308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG  387 (603)
Q Consensus       308 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (603)
                      ..  +|++|++++|.+++ +|.   .+++|+.|++++|++++ +|.                                  
T Consensus       119 ~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----------------------------------  157 (571)
T 3cvr_A          119 PA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----------------------------------  157 (571)
T ss_dssp             CT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----------------------------------
T ss_pred             hc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----------------------------------
Confidence            32  89999999999987 554   67899999999999974 331                                  


Q ss_pred             CCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCC-------CEEeCCCCcC
Q 036984          388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQI-------ESLDLSYNLL  460 (603)
Q Consensus       388 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l  460 (603)
                                .+++|+.|++++|.+++ +|. +.  ++|+.|+|++|+|+ .+|. |.+  +|       +.|++++|+|
T Consensus       158 ----------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          158 ----------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             ----------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred             ----------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence                      25789999999999996 555 65  89999999999999 6666 654  77       9999999999


Q ss_pred             cccCC-CccCCCCCCceecccCcccccCCCcccccC
Q 036984          461 HGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFS  495 (603)
Q Consensus       461 ~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~  495 (603)
                      + .+| .+..+++|+.|++++|++++.+|..++.+.
T Consensus       220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            9 466 677899999999999999998887776654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=4.7e-18  Score=159.53  Aligned_cols=156  Identities=21%  Similarity=0.202  Sum_probs=120.0

Q ss_pred             CCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhccc
Q 036984          280 GLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTA  359 (603)
Q Consensus       280 ~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  359 (603)
                      +-+.++.+++.+..+         |..+  .++|++|++++|.+++..+..|..+++|+.|++++|++....        
T Consensus        20 s~~~v~c~~~~l~~i---------p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~--------   80 (229)
T 3e6j_A           20 SGTTVDCRSKRHASV---------PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP--------   80 (229)
T ss_dssp             ETTEEECTTSCCSSC---------CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------
T ss_pred             eCCEeEccCCCcCcc---------CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC--------
Confidence            346677777766543         3322  278889999999998888888888899999999999886321        


Q ss_pred             ccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccccccccc
Q 036984          360 LSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT  439 (603)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  439 (603)
                                                       ...+..+++|+.|+|++|.+++..+..|..+++|++|+|++|+++ .
T Consensus        81 ---------------------------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~  126 (229)
T 3e6j_A           81 ---------------------------------VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-E  126 (229)
T ss_dssp             ---------------------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-S
T ss_pred             ---------------------------------hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-c
Confidence                                             223445778888888888888777777788888888888888888 6


Q ss_pred             CCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCC
Q 036984          440 IPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIP  488 (603)
Q Consensus       440 ~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p  488 (603)
                      +|..+..+++|+.|++++|++++..+ .+..+++|+.|++++|++.+..+
T Consensus       127 lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            77778888888888888888886555 57778888888888888887554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=4.4e-18  Score=158.62  Aligned_cols=157  Identities=25%  Similarity=0.283  Sum_probs=126.0

Q ss_pred             cEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCC
Q 036984          257 ATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKE  336 (603)
Q Consensus       257 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  336 (603)
                      +.+++++|.++ .+|..+.   +.++.|++++|.+..+.       .+..++.+++|++|++++|.+++..+..|..+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~-------~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~   82 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLE-------ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG   82 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEEC-------CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccC-------chhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence            46777777776 6776543   35677777777765442       1234566888999999999998888888899999


Q ss_pred             CCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccC
Q 036984          337 VRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEI  416 (603)
Q Consensus       337 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  416 (603)
                      |++|++++|++++..+                                         ..+..+++|++|+|++|.+++..
T Consensus        83 L~~L~Ls~N~l~~~~~-----------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~  121 (220)
T 2v70_A           83 VNEILLTSNRLENVQH-----------------------------------------KMFKGLESLKTLMLRSNRITCVG  121 (220)
T ss_dssp             CCEEECCSSCCCCCCG-----------------------------------------GGGTTCSSCCEEECTTSCCCCBC
T ss_pred             CCEEECCCCccCccCH-----------------------------------------hHhcCCcCCCEEECCCCcCCeEC
Confidence            9999999999874433                                         23445778999999999999888


Q ss_pred             chhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC
Q 036984          417 PTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP  465 (603)
Q Consensus       417 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  465 (603)
                      |..|..+++|++|+|++|++++..|..|..+++|+.|++++|++.+..+
T Consensus       122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            8899999999999999999998889999999999999999999987554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.5e-18  Score=174.97  Aligned_cols=178  Identities=23%  Similarity=0.224  Sum_probs=129.5

Q ss_pred             CEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhh-cCCCCcEEecCCCCcccccCCcCcccCCcccc
Q 036984          230 KNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGT-YLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID  308 (603)
Q Consensus       230 ~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~  308 (603)
                      +.++++++.+. .+|..+     .+.++.|+|++|.++ .++...+. .+++|+.|++++|.+..+.        +..+.
T Consensus        21 ~~l~c~~~~l~-~iP~~~-----~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~--------~~~~~   85 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL-----PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFIS--------SEAFV   85 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC-----CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEEC--------TTTTT
T ss_pred             CEEEeCCCCcC-ccCccC-----CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccC--------hhhcc
Confidence            67888888876 455432     245788888888887 56555554 5888888888888776543        34566


Q ss_pred             CCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCC
Q 036984          309 RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGS  388 (603)
Q Consensus       309 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (603)
                      .+++|++|+|++|+++...+..|..+++|+.|+|++|++++..|                                    
T Consensus        86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------------------------------------  129 (361)
T 2xot_A           86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR------------------------------------  129 (361)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------------------------------------
T ss_pred             CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH------------------------------------
Confidence            68888888888888887777778888888888888888874333                                    


Q ss_pred             CCCcchhhhhcccceEEECcCCCCcccCchhc---cCcCcCCEEecccccccccCCcCCcCCCC--CCEEeCCCCcCccc
Q 036984          389 PMGKEETVQILTSMSGIDLSCNKLTGEIPTQI---GYLTRIRALNLSHNNLTGTIPITFSNLKQ--IESLDLSYNLLHGK  463 (603)
Q Consensus       389 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~  463 (603)
                           ..+..+++|+.|+|++|.+++..+..+   ..+++|+.|+|++|+|++..+..+..++.  ++.|++++|++.+.
T Consensus       130 -----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          130 -----NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             -----TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             -----HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence                 233446788888888888886555445   56788888888888888655566777766  47888888888753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=7.5e-18  Score=157.01  Aligned_cols=154  Identities=21%  Similarity=0.272  Sum_probs=119.8

Q ss_pred             cEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCC
Q 036984          257 ATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKE  336 (603)
Q Consensus       257 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  336 (603)
                      +.++++++.++ .+|..+.   ++++.|++++|.+..+.        +..+..+++|++|++++|.+++..+..|.++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~--------~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~   81 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIP--------PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS   81 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEEC--------TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcC--------HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC
Confidence            57888888887 7776553   57888888887776543        345566888888888888888877888888888


Q ss_pred             CCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccC
Q 036984          337 VRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEI  416 (603)
Q Consensus       337 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  416 (603)
                      |++|++++|+++.. |                                        ...+..+++|+.|+|++|.+++..
T Consensus        82 L~~L~Ls~N~l~~l-~----------------------------------------~~~f~~l~~L~~L~L~~N~l~~~~  120 (220)
T 2v9t_B           82 LNSLVLYGNKITEL-P----------------------------------------KSLFEGLFSLQLLLLNANKINCLR  120 (220)
T ss_dssp             CCEEECCSSCCCCC-C----------------------------------------TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCEEECCCCcCCcc-C----------------------------------------HhHccCCCCCCEEECCCCCCCEeC
Confidence            88888888888732 2                                        223445678888888888888777


Q ss_pred             chhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCccc
Q 036984          417 PTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGK  463 (603)
Q Consensus       417 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  463 (603)
                      +..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus       121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            88888888888888888888877777788888888888888888753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=7.3e-18  Score=158.23  Aligned_cols=156  Identities=24%  Similarity=0.292  Sum_probs=125.2

Q ss_pred             ccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCC
Q 036984          256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLK  335 (603)
Q Consensus       256 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  335 (603)
                      .+.++.+++.+. .+|..+.   ++|+.|++++|.+..+        .|..+..+++|++|++++|.++...+..|..++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~--------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~   88 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKL--------EPGVFDSLINLKELYLGSNQLGALPVGVFDSLT   88 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCcc--------CHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence            567888888887 7887653   6889988888776543        356677788999999999999877777788899


Q ss_pred             CCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCccc
Q 036984          336 EVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE  415 (603)
Q Consensus       336 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  415 (603)
                      +|+.|++++|++++..+                                         ..+..+++|+.|++++|+++ .
T Consensus        89 ~L~~L~Ls~N~l~~l~~-----------------------------------------~~~~~l~~L~~L~Ls~N~l~-~  126 (229)
T 3e6j_A           89 QLTVLDLGTNQLTVLPS-----------------------------------------AVFDRLVHLKELFMCCNKLT-E  126 (229)
T ss_dssp             TCCEEECCSSCCCCCCT-----------------------------------------TTTTTCTTCCEEECCSSCCC-S
T ss_pred             CcCEEECCCCcCCccCh-----------------------------------------hHhCcchhhCeEeccCCccc-c
Confidence            99999999998874322                                         23345778999999999998 6


Q ss_pred             CchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC
Q 036984          416 IPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP  465 (603)
Q Consensus       416 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  465 (603)
                      +|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus       127 lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            77788889999999999999997777778889999999999999886543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=7e-18  Score=164.52  Aligned_cols=173  Identities=21%  Similarity=0.291  Sum_probs=144.2

Q ss_pred             hccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCccc
Q 036984          223 LYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGS  302 (603)
Q Consensus       223 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~  302 (603)
                      ...+++|+.|++++|.+... +.    +..+++|+.|++++|.+. .++.  +..+++|+.|++++|.+.++.       
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~~----~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~-------  106 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-QG----IQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLS-------  106 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-TT----GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGG-------
T ss_pred             hhhcCcccEEEccCCCcccC-hh----HhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCCh-------
Confidence            45788899999999988743 43    678899999999999998 4554  455899999999999876542       


Q ss_pred             CCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeE
Q 036984          303 IPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSY  382 (603)
Q Consensus       303 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (603)
                         .+..+++|++|++++|.+++.  ..+..+++|+.|++++|++++.                                
T Consensus       107 ---~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--------------------------------  149 (291)
T 1h6t_A          107 ---SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------------------------------  149 (291)
T ss_dssp             ---GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--------------------------------
T ss_pred             ---hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--------------------------------
Confidence               367799999999999999864  4688999999999999999732                                


Q ss_pred             EecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcc
Q 036984          383 FSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG  462 (603)
Q Consensus       383 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  462 (603)
                                 ..+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus       150 -----------~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          150 -----------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -----------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             -----------hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence                       234567899999999999996655  88999999999999999954 4 48899999999999999985

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=6.6e-18  Score=180.48  Aligned_cols=189  Identities=21%  Similarity=0.258  Sum_probs=103.9

Q ss_pred             ccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEE
Q 036984          205 LTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHL  284 (603)
Q Consensus       205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L  284 (603)
                      +..+.+..+.+.+..  .+..+++|+.|++++|.+.. ++.    +..+++|+.|+|++|.+. .++.  +..+++|+.|
T Consensus        23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~~----l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQG----IQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CTT----GGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEE
T ss_pred             HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-ChH----HccCCCCCEEEeeCCCCC-CChh--hccCCCCCEE
Confidence            333444444443322  24456666666666666643 232    556666666666666666 3333  3336666666


Q ss_pred             ecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccc
Q 036984          285 NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGY  364 (603)
Q Consensus       285 ~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  364 (603)
                      +|++|.+.+++          .+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|++++.              
T Consensus        93 ~Ls~N~l~~l~----------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--------------  146 (605)
T 1m9s_A           93 FLDENKIKDLS----------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------------  146 (605)
T ss_dssp             ECCSSCCCCCT----------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--------------
T ss_pred             ECcCCCCCCCh----------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--------------
Confidence            66666554321          344566666666666666542  3455666666666666666421              


Q ss_pred             cCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCC
Q 036984          365 YDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITF  444 (603)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~  444 (603)
                                                   ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.|++.  ..+
T Consensus       147 -----------------------------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l  193 (605)
T 1m9s_A          147 -----------------------------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RAL  193 (605)
T ss_dssp             -----------------------------GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGG
T ss_pred             -----------------------------hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHH
Confidence                                         122335556666666666654443  55566666666666666542  235


Q ss_pred             cCCCCCCEEeCCCCcCcc
Q 036984          445 SNLKQIESLDLSYNLLHG  462 (603)
Q Consensus       445 ~~l~~L~~L~Ls~N~l~~  462 (603)
                      ..+++|+.|+|++|++++
T Consensus       194 ~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          194 AGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             TTCTTCSEEECCSEEEEC
T ss_pred             ccCCCCCEEEccCCcCcC
Confidence            556666666666666553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.74  E-value=3e-17  Score=173.35  Aligned_cols=179  Identities=25%  Similarity=0.436  Sum_probs=148.6

Q ss_pred             CCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccC
Q 036984          254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ  333 (603)
Q Consensus       254 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  333 (603)
                      .+++.|++++|.++ .+|..++   ++|+.|++++|.+..+         |   ..+++|++|++++|.+++ +|. +..
T Consensus        59 ~~L~~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~~i---------p---~~l~~L~~L~Ls~N~l~~-ip~-l~~  120 (571)
T 3cvr_A           59 NQFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALISL---------P---ELPASLEYLDACDNRLST-LPE-LPA  120 (571)
T ss_dssp             TTCSEEECCSSCCS-CCCSCCC---TTCSEEECCSSCCSCC---------C---CCCTTCCEEECCSSCCSC-CCC-CCT
T ss_pred             CCccEEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCccc---------c---cccCCCCEEEccCCCCCC-cch-hhc
Confidence            38999999999998 5887663   6899999999987644         3   236899999999999997 555 554


Q ss_pred             CCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCc
Q 036984          334 LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLT  413 (603)
Q Consensus       334 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  413 (603)
                        +|+.|++++|++++ +|.                                            .+++|+.|++++|.++
T Consensus       121 --~L~~L~Ls~N~l~~-lp~--------------------------------------------~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A          121 --SLKHLDVDNNQLTM-LPE--------------------------------------------LPALLEYINADNNQLT  153 (571)
T ss_dssp             --TCCEEECCSSCCSC-CCC--------------------------------------------CCTTCCEEECCSSCCS
T ss_pred             --CCCEEECCCCcCCC-CCC--------------------------------------------cCccccEEeCCCCccC
Confidence              99999999999974 431                                            2678999999999999


Q ss_pred             ccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCC-------CceecccCccccc
Q 036984          414 GEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTL-------AVFRVAYNNLSGK  486 (603)
Q Consensus       414 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L-------~~L~l~~N~l~~~  486 (603)
                      + +|.   .+++|++|+|++|++++ +|. |.  ++|+.|++++|+|+ .+|.+..  +|       +.|++++|+++ .
T Consensus       154 ~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~~~~--~L~~~~~~L~~L~Ls~N~l~-~  221 (571)
T 3cvr_A          154 M-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPAVPV--RNHHSEETEIFFRCRENRIT-H  221 (571)
T ss_dssp             C-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCCCC----------CCEEEECCSSCCC-C
T ss_pred             c-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhhHHH--hhhcccccceEEecCCCcce-e
Confidence            6 554   57899999999999996 666 65  89999999999999 5554433  77       99999999999 5


Q ss_pred             CCCcccccCCCCcccccCCcCCC
Q 036984          487 IPDRVAQFSTFEEDSYEGNPFLY  509 (603)
Q Consensus       487 ~p~~~~~l~~l~~~~l~gn~~~c  509 (603)
                      +|..+..++.++.+++++|++.+
T Consensus       222 lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          222 IPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CCGGGGGSCTTEEEECCSSSCCH
T ss_pred             cCHHHhcCCCCCEEEeeCCcCCC
Confidence            88888889999999999999866

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=2e-17  Score=176.72  Aligned_cols=190  Identities=23%  Similarity=0.370  Sum_probs=122.5

Q ss_pred             CCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcccc
Q 036984          229 LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID  308 (603)
Q Consensus       229 L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~  308 (603)
                      +..+.+..+.+.+..+     ...+++|+.|++++|.+. .++.  +..+++|+.|+|++|.+.++.         . +.
T Consensus        23 l~~l~l~~~~i~~~~~-----~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~---------~-l~   84 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT-----QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIK---------P-LT   84 (605)
T ss_dssp             HHHHHTTCSCTTSEEC-----HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCG---------G-GG
T ss_pred             HHHHhccCCCcccccc-----hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCCh---------h-hc
Confidence            3334455554443222     455677777777777776 4542  334677777777777665432         1 55


Q ss_pred             CCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCC
Q 036984          309 RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGS  388 (603)
Q Consensus       309 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (603)
                      .+++|+.|+|++|.+.+. + .+..+++|+.|+|++|++.+.                                      
T Consensus        85 ~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--------------------------------------  124 (605)
T 1m9s_A           85 NLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--------------------------------------  124 (605)
T ss_dssp             GCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--------------------------------------
T ss_pred             cCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--------------------------------------
Confidence            577777777777777642 2 567777777777777777521                                      


Q ss_pred             CCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCcc
Q 036984          389 PMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLI  468 (603)
Q Consensus       389 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  468 (603)
                           ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++++ +|.+.
T Consensus       125 -----~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~l~  194 (605)
T 1m9s_A          125 -----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALA  194 (605)
T ss_dssp             -----GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGT
T ss_pred             -----ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-ChHHc
Confidence                 1234466777777777777744  456777777777777777775544  6677777777777777774 45666


Q ss_pred             CCCCCCceecccCccccc
Q 036984          469 VLTTLAVFRVAYNNLSGK  486 (603)
Q Consensus       469 ~l~~L~~L~l~~N~l~~~  486 (603)
                      .+++|+.|++++|++++.
T Consensus       195 ~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          195 GLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TCTTCSEEECCSEEEECC
T ss_pred             cCCCCCEEEccCCcCcCC
Confidence            777777777777777653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=2.1e-17  Score=150.54  Aligned_cols=111  Identities=17%  Similarity=0.198  Sum_probs=63.1

Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceec
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRV  478 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l  478 (603)
                      +++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..+...-...++...+
T Consensus        77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~  156 (192)
T 1w8a_A           77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSL  156 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCC
T ss_pred             cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCC
Confidence            44555556666666555555666777777777777777777777777777777777777777765441111111222334


Q ss_pred             ccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984          479 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       479 ~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~  512 (603)
                      ..+...+..|..+   ......++..+.+.|..+
T Consensus       157 ~~~~~~C~~P~~l---~~~~l~~l~~~~~~C~~~  187 (192)
T 1w8a_A          157 NGGAARCGAPSKV---RDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             SGGGCBBCSSTTT---TTSBGGGSCTTTCCCCCC
T ss_pred             CCCCCCCCCChHH---cCCChhhCcHhhcCcCCC
Confidence            4444444455433   222334455555556443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=3.4e-17  Score=149.91  Aligned_cols=85  Identities=18%  Similarity=0.277  Sum_probs=47.6

Q ss_pred             cccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCcc
Q 036984          251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQ  330 (603)
Q Consensus       251 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  330 (603)
                      ..+++|+.|++++|.+. .+| .+ ..+++|++|++++|.+.++          ..+..+++|++|++++|.+++..+..
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~l~~n~~~~~----------~~l~~l~~L~~L~l~~n~l~~~~~~~  107 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GI-EYAHNIKDLTINNIHATNY----------NPISGLSNLERLRIMGKDVTSDKIPN  107 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TG-GGCTTCSEEEEESCCCSCC----------GGGTTCTTCCEEEEECTTCBGGGSCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HH-hcCCCCCEEEccCCCCCcc----------hhhhcCCCCCEEEeECCccCcccChh
Confidence            34556666666666665 444 22 2355666666665543321          23444566666666666666555555


Q ss_pred             ccCCCCCCEEecCCCcCc
Q 036984          331 LCQLKEVRLIDLSHNNLS  348 (603)
Q Consensus       331 ~~~l~~L~~L~Ls~n~l~  348 (603)
                      +..+++|++|++++|+++
T Consensus       108 l~~l~~L~~L~Ls~n~i~  125 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHD  125 (197)
T ss_dssp             CTTCTTCCEEECCSSBCB
T ss_pred             hcCCCCCCEEEecCCccC
Confidence            666666666666666655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.9e-17  Score=158.73  Aligned_cols=171  Identities=18%  Similarity=0.230  Sum_probs=123.0

Q ss_pred             ccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccc
Q 036984          252 CLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQL  331 (603)
Q Consensus       252 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  331 (603)
                      .+.++..++++++.+. .++ . +..+++|+.|++++|.+.++.          .+..+++|++|++++|.+++..+  +
T Consensus        17 ~l~~l~~l~l~~~~i~-~~~-~-~~~l~~L~~L~l~~n~i~~l~----------~l~~l~~L~~L~L~~N~i~~~~~--l   81 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVT-DLV-S-QKELSGVQNFNGDNSNIQSLA----------GMQFFTNLKELHLSHNQISDLSP--L   81 (263)
T ss_dssp             HHHHHHHHHHTCSCTT-SEE-C-HHHHTTCSEEECTTSCCCCCT----------TGGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             HHHHHHHHHhcCCCcc-ccc-c-hhhcCcCcEEECcCCCcccch----------HHhhCCCCCEEECCCCccCCChh--h
Confidence            4556677777777776 444 2 233677888887777765432          34557788888888888876544  7


Q ss_pred             cCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCC
Q 036984          332 CQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNK  411 (603)
Q Consensus       332 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  411 (603)
                      ..+++|+.|++++|++++ +|.                                          ... ++|+.|++++|.
T Consensus        82 ~~l~~L~~L~L~~N~l~~-l~~------------------------------------------~~~-~~L~~L~L~~N~  117 (263)
T 1xeu_A           82 KDLTKLEELSVNRNRLKN-LNG------------------------------------------IPS-ACLSRLFLDNNE  117 (263)
T ss_dssp             TTCSSCCEEECCSSCCSC-CTT------------------------------------------CCC-SSCCEEECCSSC
T ss_pred             ccCCCCCEEECCCCccCC-cCc------------------------------------------ccc-CcccEEEccCCc
Confidence            788888888888888763 110                                          011 578888888888


Q ss_pred             CcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCccccc
Q 036984          412 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGK  486 (603)
Q Consensus       412 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~  486 (603)
                      +++. + .+..+++|++|++++|++++. + .+..+++|+.|++++|++++. +.+..+++|+.|++++|++++.
T Consensus       118 l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          118 LRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence            8753 3 577888888888888888854 3 577888888888888888855 6677888888888888888754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=3.3e-17  Score=149.98  Aligned_cols=151  Identities=19%  Similarity=0.257  Sum_probs=108.0

Q ss_pred             CCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhc
Q 036984          278 LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVN  357 (603)
Q Consensus       278 l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  357 (603)
                      +++|+.|++++|.+.++.          .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..+..   
T Consensus        43 l~~L~~L~l~~n~i~~l~----------~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~---  107 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT----------GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPN---  107 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT----------TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCC---
T ss_pred             cCCccEEeccCCCccChH----------HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChh---
Confidence            567888888877765432          35557788888888886653  246777888888888888886433322   


Q ss_pred             ccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccccc-c
Q 036984          358 TALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN-L  436 (603)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l  436 (603)
                                                            +..+++|+.|++++|.+++..+..+..+++|++|++++|. +
T Consensus       108 --------------------------------------l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i  149 (197)
T 4ezg_A          108 --------------------------------------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI  149 (197)
T ss_dssp             --------------------------------------CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred             --------------------------------------hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence                                                  2336778888888888887677778888888888888887 6


Q ss_pred             cccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCccc
Q 036984          437 TGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS  484 (603)
Q Consensus       437 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~  484 (603)
                      + .+| .+.++++|++|++++|++++ ++.+..+++|++|++++|++.
T Consensus       150 ~-~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          150 T-DIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             C-CCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC---
T ss_pred             c-ccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcccC
Confidence            5 444 57778888888888888874 446777788888888888765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=5.1e-17  Score=155.77  Aligned_cols=168  Identities=20%  Similarity=0.296  Sum_probs=106.0

Q ss_pred             CCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccc
Q 036984          228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI  307 (603)
Q Consensus       228 ~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l  307 (603)
                      ++..++++++.+.+.. .    +..+++|+.|++++|.+. .++ . +..+++|+.|++++|.+.++.         . +
T Consensus        20 ~l~~l~l~~~~i~~~~-~----~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~---------~-l   81 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-S----QKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLS---------P-L   81 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-C----HHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCG---------G-G
T ss_pred             HHHHHHhcCCCccccc-c----hhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCCh---------h-h
Confidence            3444455555554222 1    455666666666666665 455 2 233666777666666655432         1 5


Q ss_pred             cCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCC
Q 036984          308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG  387 (603)
Q Consensus       308 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (603)
                      ..+++|++|++++|++++..+  +.. ++|+.|++++|++++.                                     
T Consensus        82 ~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~-------------------------------------  121 (263)
T 1xeu_A           82 KDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT-------------------------------------  121 (263)
T ss_dssp             TTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS-------------------------------------
T ss_pred             ccCCCCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCC-------------------------------------
Confidence            556777777777777765322  222 6777777777777531                                     


Q ss_pred             CCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCccc
Q 036984          388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGK  463 (603)
Q Consensus       388 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  463 (603)
                            ..+..+++|+.|++++|++++. + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       122 ------~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          122 ------DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ------GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ------hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence                  1234466777777777777744 3 577778888888888888755  5677788888888888887744

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=3.7e-16  Score=142.12  Aligned_cols=112  Identities=22%  Similarity=0.317  Sum_probs=103.0

Q ss_pred             ccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceec
Q 036984          400 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRV  478 (603)
Q Consensus       400 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l  478 (603)
                      ++++.|++++|.++ .+|..+..+++|++|+|++|+|++..+..|.++++|++|++++|++++..| .+..+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            57999999999998 677899999999999999999998888899999999999999999997777 7999999999999


Q ss_pred             ccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984          479 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       479 ~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~  512 (603)
                      ++|++++..+..+..++.++.+++++|||.|++.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            9999997777778899999999999999999543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=2.5e-19  Score=190.36  Aligned_cols=65  Identities=22%  Similarity=0.238  Sum_probs=35.6

Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccC-CcCCcCCCCCCEEeCCCCcCcccCC
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI-PITFSNLKQIESLDLSYNLLHGKIP  465 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~  465 (603)
                      +++|+.|+|++|.+++ +| .+..+++|++|+|++|++++.. |..|.++++|+.|++++|++++.+|
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            4455555555555553 33 4555555555555555555444 5555555555555555555554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=2.4e-16  Score=143.47  Aligned_cols=113  Identities=22%  Similarity=0.296  Sum_probs=99.4

Q ss_pred             ccceEEECcCCCCcccCch-hccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCcee
Q 036984          400 TSMSGIDLSCNKLTGEIPT-QIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFR  477 (603)
Q Consensus       400 ~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~  477 (603)
                      .++++|++++|.+++..+. .+..+++|++|+|++|++++..|..|.++++|++|++++|++++..+ .+..+++|++|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            3788999999999866654 48889999999999999998888999999999999999999997777 588899999999


Q ss_pred             cccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984          478 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       478 l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~  512 (603)
                      +++|++++..|..+..++.++.+++++|+|.|.++
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99999999889888899999999999999998554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=1.8e-16  Score=157.77  Aligned_cols=288  Identities=11%  Similarity=0.061  Sum_probs=174.8

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCC-CCCCCEEEccCCcCC--CCccCcccCCCCCEEEccCCCCCcCCchhhcC----
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQ-LVHLQELYIRDNDLR--DSLLGAWQTTSLQELNVASNKLTRNFPLGLCE----  103 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~-l~~L~~L~Ls~n~i~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~----  103 (603)
                      +++++.|.++++- .....  ..+.. +++|++|||++|++.  ......  ++.++.+.+..+.+   .+.+|.+    
T Consensus        24 ~~~l~~L~l~g~i-~~~~~--~~l~~~l~~L~~LdLs~n~i~~~~~~~~~--~~~~~~~~~~~~~I---~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDF--RHLRDEFPSLKVLDISNAEIKMYSGKAGT--YPNGKFYIYMANFV---PAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHH--HHHHHSCTTCCEEEEEEEEECCEEESSSS--SGGGCCEEECTTEE---CTTTTEEEETT
T ss_pred             hCceeEEEEeccc-cHHHH--HHHHHhhccCeEEecCcceeEEecCcccc--cccccccccccccc---CHHHhcccccc
Confidence            4567788887642 11100  12223 777888888888877  333222  23345555555533   3356677    


Q ss_pred             ----CCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeee---ecCccccC
Q 036984          104 ----LVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI---PISLEPLS  176 (603)
Q Consensus       104 ----l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~---~~~~~~l~  176 (603)
                          +++|+.|+|.+ .++.+.+.+|.++++|+.+++++|.+. .++..+|..+.++..+....+..-.   ......+.
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence                88888888888 777777778888888888888888887 5666678877777777665532100   00111122


Q ss_pred             CCCCCc-eeeccce-eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccC
Q 036984          177 NLSKLK-AFNGEIY-LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQ  254 (603)
Q Consensus       177 ~L~~L~-~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~  254 (603)
                      ++..|+ .+..... ......+..-....+++.+.+.+.-...........+++|+.+++++|.+....+..   |..++
T Consensus       174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a---F~~~~  250 (329)
T 3sb4_A          174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT---FAQKK  250 (329)
T ss_dssp             ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT---TTTCT
T ss_pred             cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhh---hhCCC
Confidence            222222 1111000 000000001111224455555443221111111224788999999988887444443   67788


Q ss_pred             CccEEEccCccccccCChhhhhcCCCCc-EEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccC
Q 036984          255 KLATLDVSNNFFQGHIPVEIGTYLPGLM-HLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ  333 (603)
Q Consensus       255 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  333 (603)
                      +|+.+++.+| +. .++...|..+++|+ .+++.+ .+..++        +..|.+|++|+.+++++|.++.+.+.+|.+
T Consensus       251 ~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~--------~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~  319 (329)
T 3sb4_A          251 YLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIE--------FGAFMGCDNLRYVLATGDKITTLGDELFGN  319 (329)
T ss_dssp             TCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEEC--------TTTTTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred             CCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEc--------hhhhhCCccCCEEEeCCCccCccchhhhcC
Confidence            8999999887 66 78888888888898 888877 555554        345556889999999888888888888999


Q ss_pred             CCCCCEEec
Q 036984          334 LKEVRLIDL  342 (603)
Q Consensus       334 l~~L~~L~L  342 (603)
                      +++|+.+..
T Consensus       320 ~~~L~~ly~  328 (329)
T 3sb4_A          320 GVPSKLIYK  328 (329)
T ss_dssp             TCCCCEEEC
T ss_pred             Ccchhhhcc
Confidence            999988764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=2.3e-16  Score=156.86  Aligned_cols=290  Identities=12%  Similarity=0.038  Sum_probs=188.9

Q ss_pred             CCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc----
Q 036984            4 FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ----   79 (603)
Q Consensus         4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----   79 (603)
                      +.+++.|.++++--  ..++.. ....+++|+.|||++|++......   ...++.++.+.+..+   .++..+|.    
T Consensus        24 ~~~l~~L~l~g~i~--~~~~~~-l~~~l~~L~~LdLs~n~i~~~~~~---~~~~~~~~~~~~~~~---~I~~~aF~~~~~   94 (329)
T 3sb4_A           24 ANSITHLTLTGKLN--AEDFRH-LRDEFPSLKVLDISNAEIKMYSGK---AGTYPNGKFYIYMAN---FVPAYAFSNVVN   94 (329)
T ss_dssp             HHHCSEEEEEEEEC--HHHHHH-HHHSCTTCCEEEEEEEEECCEEES---SSSSGGGCCEEECTT---EECTTTTEEEET
T ss_pred             hCceeEEEEecccc--HHHHHH-HHHhhccCeEEecCcceeEEecCc---ccccccccccccccc---ccCHHHhccccc
Confidence            45688888888422  123333 233378999999999998722111   122233455555555   44455553    


Q ss_pred             -----CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcC---CccCCccccc
Q 036984           80 -----TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQL---TESISSSPLM  151 (603)
Q Consensus        80 -----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~  151 (603)
                           +++|+.|++.+ .++.+.+.+|.++++|+.+++++|.+..+.+.+|.++.++..+.+..+..   ...+....|.
T Consensus        95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence                 68899999988 78887778899999999999999988878888888888777777655321   1123334566


Q ss_pred             CCCCCc-EEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCC-CCcccccEEeccCCCCCCCcChhhccCCCC
Q 036984          152 LLTSIE-ELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSL-TPKFQLTSISLSGYRDDGTFPKFLYHQHDL  229 (603)
Q Consensus       152 ~l~~L~-~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  229 (603)
                      .+..|+ .+.+.....-....+.......++..+....... ...+..+ ..+.+|+.+++.+|.++......|.++++|
T Consensus       174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L  252 (329)
T 3sb4_A          174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLD-NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL  252 (329)
T ss_dssp             ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCC-HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred             cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeec-HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence            677776 4444332211000000011112222222211100 0000000 014589999999999988888899999999


Q ss_pred             CEEEcCCCcccCCCCCCCccccccCCcc-EEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcccc
Q 036984          230 KNADLSHLNLSGEFPNWLMPIHCLQKLA-TLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID  308 (603)
Q Consensus       230 ~~L~L~~n~i~~~~~~~~~~~~~l~~L~-~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~  308 (603)
                      +.+++.+| +....+..   |..+++|+ .+++.+ .++ .++...|..|++|+.+++++|.+..++...|        .
T Consensus       253 ~~l~l~~n-i~~I~~~a---F~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF--------~  318 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQRV---FSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELF--------G  318 (329)
T ss_dssp             CEEECCTT-CCEECTTT---TTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTT--------C
T ss_pred             CEEECCcc-cceehHHH---hhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhh--------c
Confidence            99999998 65444444   77899999 999998 776 7888889999999999999998887775444        4


Q ss_pred             CCCCCCEEec
Q 036984          309 RLPQISYLLL  318 (603)
Q Consensus       309 ~l~~L~~L~L  318 (603)
                      ++++|+.++.
T Consensus       319 ~~~~L~~ly~  328 (329)
T 3sb4_A          319 NGVPSKLIYK  328 (329)
T ss_dssp             TTCCCCEEEC
T ss_pred             CCcchhhhcc
Confidence            5899998874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=8.9e-16  Score=136.59  Aligned_cols=86  Identities=22%  Similarity=0.223  Sum_probs=45.0

Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCC-cCCcCCCCCCEEeCCCCcCcccCC----CccCCCCC
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP-ITFSNLKQIESLDLSYNLLHGKIP----QLIVLTTL  473 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~l~~L  473 (603)
                      +++|+.|++++|.+++.+|..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++++..+    .+..+++|
T Consensus        70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence            4455555555555554444444445555555555555553211 445555555555555555554433    34455555


Q ss_pred             CceecccCccc
Q 036984          474 AVFRVAYNNLS  484 (603)
Q Consensus       474 ~~L~l~~N~l~  484 (603)
                      ++|++++|.+.
T Consensus       150 ~~L~l~~n~~~  160 (168)
T 2ell_A          150 TYLDGYDREDQ  160 (168)
T ss_dssp             CEETTEETTSC
T ss_pred             cEecCCCCChh
Confidence            55555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=4.9e-18  Score=180.43  Aligned_cols=202  Identities=16%  Similarity=0.190  Sum_probs=137.9

Q ss_pred             cccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCc-c----cccCCcCcccCCccccCCCCCCEEe-ccCCcCc
Q 036984          251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF-N----DLSYNRLQGSIPNWIDRLPQISYLL-LANNYIE  324 (603)
Q Consensus       251 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-~----~l~~~~~~~~~~~~l~~l~~L~~L~-L~~n~l~  324 (603)
                      ..++.|+.|++++|.+. .+|..+.. +++|+.|++++|.. .    .+......+..|..++.+++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            34677788888888876 77777665 77788877765531 0    0011123345566666677777777 5555332


Q ss_pred             ccCCc-----cccC--CCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhh
Q 036984          325 GEIPA-----QLCQ--LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQ  397 (603)
Q Consensus       325 ~~~~~-----~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (603)
                      .....     .+..  ...|+.|++++|.+++ +|.                                          +.
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~------------------------------------------~~  460 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH------------------------------------------LE  460 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC------------------------------------------GG
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC------------------------------------------cc
Confidence            11000     0000  1358889999998873 331                                          34


Q ss_pred             hcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccC-C-CccCCCCCCc
Q 036984          398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI-P-QLIVLTTLAV  475 (603)
Q Consensus       398 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~-~~~~l~~L~~  475 (603)
                      .+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+|++ +| .+.++++|+.|++++|++++.+ | .+..+++|+.
T Consensus       461 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~  537 (567)
T 1dce_A          461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL  537 (567)
T ss_dssp             GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence            5778999999999998 778888899999999999999985 56 7888999999999999998775 6 7888999999


Q ss_pred             eecccCcccccCCCc---ccccCCCCcc
Q 036984          476 FRVAYNNLSGKIPDR---VAQFSTFEED  500 (603)
Q Consensus       476 L~l~~N~l~~~~p~~---~~~l~~l~~~  500 (603)
                      |++++|++++..|..   +..++.++.+
T Consensus       538 L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          538 LNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             EECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             EEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            999999998765532   1224555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.61  E-value=4.4e-14  Score=143.37  Aligned_cols=82  Identities=9%  Similarity=0.102  Sum_probs=46.9

Q ss_pred             CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEE
Q 036984           80 TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEEL  159 (603)
Q Consensus        80 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L  159 (603)
                      +..++.+.+.++ ++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+. .+...+|..+.+|+.+
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCee
Confidence            455666665543 444445556553 5666666554 554555566663 566666654 444 3454466666666666


Q ss_pred             EccCceee
Q 036984          160 ILSNNHFQ  167 (603)
Q Consensus       160 ~l~~n~~~  167 (603)
                      ++.+|.++
T Consensus       186 ~l~~n~l~  193 (401)
T 4fdw_A          186 DLSKTKIT  193 (401)
T ss_dssp             ECTTSCCS
T ss_pred             ecCCCcce
Confidence            66665443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=6.3e-15  Score=133.95  Aligned_cols=131  Identities=17%  Similarity=0.250  Sum_probs=113.4

Q ss_pred             cEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEecc
Q 036984           35 RLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYID  113 (603)
Q Consensus        35 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (603)
                      +.++++++.++..   +..+  .++|++|++++|.++.++ ..|. +++|++|++++|.+++..+..|.++++|++|+|+
T Consensus        13 ~~l~~~~~~l~~i---p~~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLKVL---PKGI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCSSC---CSCC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCCcC---CCCC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            5889999988752   3333  368999999999999887 4555 9999999999999999888899999999999999


Q ss_pred             CCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCc
Q 036984          114 NNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISL  172 (603)
Q Consensus       114 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  172 (603)
                      +|.+++..+.+|.++++|++|+|++|.++ .++...|..+++|++|++++|++.+....
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            99999888889999999999999999998 56666789999999999999999865543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=3.4e-16  Score=171.58  Aligned_cols=143  Identities=24%  Similarity=0.268  Sum_probs=75.4

Q ss_pred             CCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeE
Q 036984          303 IPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSY  382 (603)
Q Consensus       303 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (603)
                      .+..+..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+                           
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~---------------------------  266 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI---------------------------  266 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG---------------------------
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh---------------------------
Confidence            3445555666666666666665 34444445666666666666665 444332                           


Q ss_pred             EecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcc
Q 036984          383 FSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG  462 (603)
Q Consensus       383 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  462 (603)
                                    ..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.|+ .+|..|.++++|+.|+|++|++++
T Consensus       267 --------------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          267 --------------KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             --------------GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             --------------hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence                          22456666666666666 45556666666666666666665 455556666666666666666665


Q ss_pred             cCC-CccCC-CCCCceecccCcccccCCCc
Q 036984          463 KIP-QLIVL-TTLAVFRVAYNNLSGKIPDR  490 (603)
Q Consensus       463 ~~~-~~~~l-~~L~~L~l~~N~l~~~~p~~  490 (603)
                      .+| .+... ..+..+++++|.+++.+|..
T Consensus       331 ~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          331 QFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             CChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            554 22111 11122445555555544443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=1.6e-16  Score=174.24  Aligned_cols=212  Identities=18%  Similarity=0.172  Sum_probs=101.2

Q ss_pred             cccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccC---------CCCCCCccccccCCccEEEccCccccccCChhh
Q 036984          204 QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSG---------EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEI  274 (603)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~---------~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~  274 (603)
                      .++.+++..+.+... +..     .++.++|+.+.+.+         ..+..   +..++.|+.|+|++|.+. .+|..+
T Consensus       174 ~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~---~~~l~~L~~L~Ls~n~l~-~l~~~~  243 (727)
T 4b8c_D          174 LTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDS---KYDDQLWHALDLSNLQIF-NISANI  243 (727)
T ss_dssp             ---------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGG
T ss_pred             ccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhh---hccCCCCcEEECCCCCCC-CCChhh
Confidence            577777777766542 222     23334444443332         22332   556778888888888887 777777


Q ss_pred             hhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChh
Q 036984          275 GTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFC  354 (603)
Q Consensus       275 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  354 (603)
                      +. +++|+.|+|++|.+.         .+|..++.+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..
T Consensus       244 ~~-l~~L~~L~Ls~N~l~---------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~  311 (727)
T 4b8c_D          244 FK-YDFLTRLYLNGNSLT---------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE  311 (727)
T ss_dssp             GG-CCSCSCCBCTTSCCS---------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred             cC-CCCCCEEEeeCCcCc---------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh
Confidence            74 778888777777654         44666777888888888888887 56777888888888888888775 44432


Q ss_pred             hhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCc-CCEEeccc
Q 036984          355 LVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTR-IRALNLSH  433 (603)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~Ls~  433 (603)
                                                               +..+++|+.|+|++|.+++.+|..+..+.. +..|+|++
T Consensus       312 -----------------------------------------~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~  350 (727)
T 4b8c_D          312 -----------------------------------------FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRD  350 (727)
T ss_dssp             -----------------------------------------TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhcc
Confidence                                                     233667888888888888777776654422 23467888


Q ss_pred             ccccccCCcCCcCCCCCCEEeCCCC--------cCcccCC-CccCCCCCCceecccCccc
Q 036984          434 NNLTGTIPITFSNLKQIESLDLSYN--------LLHGKIP-QLIVLTTLAVFRVAYNNLS  484 (603)
Q Consensus       434 N~l~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~~-~~~~l~~L~~L~l~~N~l~  484 (603)
                      |.+++.+|..      |+.|++++|        .+.+..+ .+..+..+....+++|-+.
T Consensus       351 N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          351 NRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             CCCCCCCCCC-----------------------------------------------CCC
T ss_pred             CcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            8887766643      455666666        2222222 3344555566666777664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=3e-15  Score=133.14  Aligned_cols=135  Identities=21%  Similarity=0.207  Sum_probs=114.6

Q ss_pred             HhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCC
Q 036984           29 ELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLL  107 (603)
Q Consensus        29 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (603)
                      ..+++|++|++++|.++.. ..+..+..+++|++|++++|.++.+  ..+. +++|++|++++|.+.+..|..+..+++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~-~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDG-KIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTT-BCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             CCcccCCEEECCCCCCChh-hHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            3468899999999998732 2345678999999999999999988  5555 9999999999999998788888889999


Q ss_pred             cEEeccCCCCccCcC-ccCCCCCCCCEEEcccCcCCccCCc---ccccCCCCCcEEEccCceee
Q 036984          108 RELYIDNNDLSGSLP-LCLTNLTSLQVLDVSYNQLTESISS---SPLMLLTSIEELILSNNHFQ  167 (603)
Q Consensus       108 ~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~~l~~L~~L~l~~n~~~  167 (603)
                      ++|++++|.+++..+ ..+.++++|++|++++|.+++ .+.   ..+..+++|++|++++|.+.
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh
Confidence            999999999986432 789999999999999999985 443   36889999999999999765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.2e-15  Score=131.03  Aligned_cols=81  Identities=21%  Similarity=0.251  Sum_probs=40.2

Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEeccccccccc-CCcCCcCCCCCCEEeCCCCcCcccCC----CccCCCCC
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT-IPITFSNLKQIESLDLSYNLLHGKIP----QLIVLTTL  473 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~l~~L  473 (603)
                      +++|+.|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+    .+..+++|
T Consensus        63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  142 (149)
T 2je0_A           63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL  142 (149)
T ss_dssp             CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence            44455555555555544444444455555555555555532 12445555555555555555554333    24445555


Q ss_pred             Cceecc
Q 036984          474 AVFRVA  479 (603)
Q Consensus       474 ~~L~l~  479 (603)
                      +.|+++
T Consensus       143 ~~L~l~  148 (149)
T 2je0_A          143 TYLDGY  148 (149)
T ss_dssp             CEETTB
T ss_pred             ccccCC
Confidence            555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=1.5e-13  Score=139.49  Aligned_cols=248  Identities=10%  Similarity=0.134  Sum_probs=147.6

Q ss_pred             cccCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCC
Q 036984           52 QGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSL  131 (603)
Q Consensus        52 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  131 (603)
                      .+|.++ +|+.+.+..+ ++.+...+|.-.+|+.+.+.+ .+..+.+.+|.++++|+.+++++|+++.+...+|. ..+|
T Consensus       130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L  205 (401)
T 4fdw_A          130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI  205 (401)
T ss_dssp             TTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred             hhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence            345443 4555555444 555555555533455555554 44444445555555555555555555544444444 3555


Q ss_pred             CEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEecc
Q 036984          132 QVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLS  211 (603)
Q Consensus       132 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  211 (603)
                      +.+.+..+ +. .++..+|.++++|+.+.+..+- + .+.                     ...   |.. .+|+.+.+.
T Consensus       206 ~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l-~-~I~---------------------~~a---F~~-~~L~~i~lp  256 (401)
T 4fdw_A          206 EEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENV-S-TIG---------------------QEA---FRE-SGITTVKLP  256 (401)
T ss_dssp             SEEECCTT-CC-EECTTTTTTCTTCCCEECCTTC-C-EEC---------------------TTT---TTT-CCCSEEEEE
T ss_pred             CEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCc-c-Ccc---------------------ccc---ccc-CCccEEEeC
Confidence            55555533 33 3444455555555555555431 1 111                     111   111 356666663


Q ss_pred             CCCCCCCcChhhccCCCCCEEEcCCCcccC----CCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecC
Q 036984          212 GYRDDGTFPKFLYHQHDLKNADLSHLNLSG----EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLS  287 (603)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~  287 (603)
                       +.+.......|..+++|+.+++.++.+..    .++..  .|..+++|+.+++. +.+. .++...|..|++|+.+.+.
T Consensus       257 -~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          257 -NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             -TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT--TTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEEEEC
T ss_pred             -CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH--HhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEEEEC
Confidence             33444456778888888888888776531    12222  26778888988888 4466 7777888888889988885


Q ss_pred             CCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCC-CCCEEecCCCcC
Q 036984          288 RNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLK-EVRLIDLSHNNL  347 (603)
Q Consensus       288 ~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l  347 (603)
                      .+ +..++.        ..|.++ +|+.+++.+|.+....+..|.+++ .++.|.+..+.+
T Consensus       332 ~~-l~~I~~--------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          332 AN-VTQINF--------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TT-CCEECT--------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             cc-ccEEcH--------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            54 455443        344457 888999988888777777787774 678888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.57  E-value=1.1e-13  Score=141.15  Aligned_cols=83  Identities=8%  Similarity=0.019  Sum_probs=52.3

Q ss_pred             hhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCC
Q 036984          396 VQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLA  474 (603)
Q Consensus       396 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~  474 (603)
                      +..+.+|+.+.+.++ ++.....+|.++++|+.++|.++ ++.+...+|.++.+|+.+++..+ ++.... .|..+++|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            344566666666544 44445556777777777777644 55455667777777777777665 553333 677777777


Q ss_pred             ceecccC
Q 036984          475 VFRVAYN  481 (603)
Q Consensus       475 ~L~l~~N  481 (603)
                      .+++..+
T Consensus       370 ~i~lp~~  376 (394)
T 4fs7_A          370 KVELPKR  376 (394)
T ss_dssp             EEEEEGG
T ss_pred             EEEECCC
Confidence            7777544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=1.3e-14  Score=130.25  Aligned_cols=114  Identities=22%  Similarity=0.229  Sum_probs=101.4

Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCcee
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFR  477 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~  477 (603)
                      +++|+.|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+ .+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            3689999999999997777778999999999999999997777788999999999999999997666 578899999999


Q ss_pred             cccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984          478 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       478 l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~  512 (603)
                      +++|++++..+..+..++.++.+++++|++.|.++
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999997666667889999999999999999443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=5e-14  Score=126.35  Aligned_cols=130  Identities=22%  Similarity=0.222  Sum_probs=108.5

Q ss_pred             CcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEec
Q 036984           34 LRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYI  112 (603)
Q Consensus        34 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (603)
                      .+.++++++.+...   +.  .-.++|++|++++|.++.+++..|. +++|++|++++|.+++..+..|..+++|++|++
T Consensus         9 ~~~l~~~~~~l~~~---p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLTSV---PT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCSSC---CT--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCccC---CC--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            46788888887652   22  2347899999999999988888877 899999999999999877777889999999999


Q ss_pred             cCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeee
Q 036984          113 DNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIP  169 (603)
Q Consensus       113 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~  169 (603)
                      ++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++|++.+.
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeecc
Confidence            999999777777889999999999999998 46665778899999999999988753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=6.2e-15  Score=128.22  Aligned_cols=129  Identities=19%  Similarity=0.180  Sum_probs=109.1

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE  109 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (603)
                      ++++++|++++|.++.. ..+..+..+++|++|++++|.++++  ..+. +++|++|++++|.+++..|..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEG-KLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTT-BCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChh-HHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            57899999999998721 2345788999999999999999988  5555 999999999999999878888888999999


Q ss_pred             EeccCCCCccC-cCccCCCCCCCCEEEcccCcCCccCCc---ccccCCCCCcEEEccC
Q 036984          110 LYIDNNDLSGS-LPLCLTNLTSLQVLDVSYNQLTESISS---SPLMLLTSIEELILSN  163 (603)
Q Consensus       110 L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~~l~~L~~L~l~~  163 (603)
                      |++++|.+++. .+..+.++++|++|++++|.+++ .+.   ..+..+++|++|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence            99999999863 34789999999999999999985 443   3688899999998863

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=4.7e-14  Score=125.38  Aligned_cols=109  Identities=26%  Similarity=0.256  Sum_probs=93.9

Q ss_pred             cceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecc
Q 036984          401 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVA  479 (603)
Q Consensus       401 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~  479 (603)
                      +.+.+++++|.++ .+|..+.  ++|++|+|++|+|++..|..|.++++|++|++++|++++..+ .+..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4578999999998 5665554  789999999999998888889999999999999999996666 57889999999999


Q ss_pred             cCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984          480 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP  512 (603)
Q Consensus       480 ~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~  512 (603)
                      +|++++..+..+..++.++.+++++||+.|.++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998777778899999999999999999543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=2.7e-14  Score=127.95  Aligned_cols=85  Identities=16%  Similarity=0.153  Sum_probs=50.0

Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCc--CCcCCCCCCEEeCCCCcCcccCCC----ccCCCC
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPI--TFSNLKQIESLDLSYNLLHGKIPQ----LIVLTT  472 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----~~~l~~  472 (603)
                      +++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|.  .+..+++|+.|++++|+++...+.    +..+++
T Consensus        63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~  141 (176)
T 1a9n_A           63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ  141 (176)
T ss_dssp             CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTT
T ss_pred             CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCc
Confidence            455666666666666444444466666666666666665 3333  556666666666666666632222    555666


Q ss_pred             CCceecccCccc
Q 036984          473 LAVFRVAYNNLS  484 (603)
Q Consensus       473 L~~L~l~~N~l~  484 (603)
                      |+.|++++|...
T Consensus       142 L~~Ld~~~n~~~  153 (176)
T 1a9n_A          142 VRVLDFQKVKLK  153 (176)
T ss_dssp             CSEETTEECCHH
T ss_pred             cceeCCCcCCHH
Confidence            666666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.49  E-value=9.1e-13  Score=134.32  Aligned_cols=219  Identities=10%  Similarity=0.039  Sum_probs=145.4

Q ss_pred             hhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcc
Q 036984          222 FLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQG  301 (603)
Q Consensus       222 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~  301 (603)
                      .|..+++|+.+.+..+..  .++..  .+..+.+|+.+++..+ +. .++...|..++.|+.+.+..+.. .+       
T Consensus       157 aF~~c~~L~~i~l~~~~~--~I~~~--~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~-~i-------  222 (394)
T 4fs7_A          157 AFATCESLEYVSLPDSME--TLHNG--LFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLY-YL-------  222 (394)
T ss_dssp             TTTTCTTCCEEECCTTCC--EECTT--TTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCC-EE-------
T ss_pred             hhcccCCCcEEecCCccc--eeccc--cccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCce-Ee-------
Confidence            455566666666654321  12221  1556677777777655 43 56666666677777766655432 11       


Q ss_pred             cCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCee
Q 036984          302 SIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALS  381 (603)
Q Consensus       302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (603)
                        ........+|+.+.+... ++.+...+|..+..|+.+.+..+...                                 
T Consensus       223 --~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~---------------------------------  266 (394)
T 4fs7_A          223 --GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR---------------------------------  266 (394)
T ss_dssp             --CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE---------------------------------
T ss_pred             --ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce---------------------------------
Confidence              112223467788877643 33456677888888888888766442                                 


Q ss_pred             EEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCc
Q 036984          382 YFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH  461 (603)
Q Consensus       382 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  461 (603)
                               .....+..+..++.+....+.+   ...+|..+.+|+.+.+.++ ++.+...+|.++.+|+.+++.++ ++
T Consensus       267 ---------i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~  332 (394)
T 4fs7_A          267 ---------IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE  332 (394)
T ss_dssp             ---------ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred             ---------eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence                     1123344566777777665433   3356888999999999876 66577788999999999999865 66


Q ss_pred             ccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCC
Q 036984          462 GKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGN  505 (603)
Q Consensus       462 ~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn  505 (603)
                      .... .|..+++|+.+++..+ +...-...|..+..|+.+.+..+
T Consensus       333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            3434 7899999999999877 66566677888888988877554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=5e-14  Score=126.20  Aligned_cols=129  Identities=21%  Similarity=0.175  Sum_probs=102.7

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCC-CCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCc
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQL-VHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLR  108 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  108 (603)
                      +++|++|++++|.++..   + .+..+ ++|++|++++|.++++  ..+. +++|++|++++|.+++..+..+..+++|+
T Consensus        18 ~~~L~~L~l~~n~l~~i---~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI---E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TTSCEEEECTTSCCCSC---C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCceEEEeeCCCCchh---H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            67889999999988752   2 34444 4899999999998887  4455 88999999999999886656668899999


Q ss_pred             EEeccCCCCccCcCc--cCCCCCCCCEEEcccCcCCccCCcc---cccCCCCCcEEEccCceee
Q 036984          109 ELYIDNNDLSGSLPL--CLTNLTSLQVLDVSYNQLTESISSS---PLMLLTSIEELILSNNHFQ  167 (603)
Q Consensus       109 ~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~---~~~~l~~L~~L~l~~n~~~  167 (603)
                      +|++++|.++. .|.  .+.++++|++|++++|.++ .+|..   .+..+++|+.|++++|...
T Consensus        92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999999874 554  7888999999999999987 45552   3788899999999888765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=1.4e-13  Score=122.71  Aligned_cols=106  Identities=20%  Similarity=0.209  Sum_probs=89.2

Q ss_pred             eEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccC
Q 036984          403 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYN  481 (603)
Q Consensus       403 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N  481 (603)
                      +.+++++|.++ .+|..+.  ++|++|+|++|+|++..|..|.++++|++|++++|+|++..+ .+..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67899999987 6666554  789999999999998888889999999999999999996555 4678999999999999


Q ss_pred             cccccCCCcccccCCCCcccccCCcCCCCC
Q 036984          482 NLSGKIPDRVAQFSTFEEDSYEGNPFLYGQ  511 (603)
Q Consensus       482 ~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~  511 (603)
                      ++++..+..+..++.++.+++++|++.|.+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            999766666888899999999999998843

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=8.6e-13  Score=117.14  Aligned_cols=106  Identities=26%  Similarity=0.251  Sum_probs=73.4

Q ss_pred             CCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccC
Q 036984           60 LQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN  139 (603)
Q Consensus        60 L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  139 (603)
                      .+++++++|.++.++...  .++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            356677777776666544  366777777777777766667777777777777777777666666777777777777777


Q ss_pred             cCCccCCcccccCCCCCcEEEccCceeee
Q 036984          140 QLTESISSSPLMLLTSIEELILSNNHFQI  168 (603)
Q Consensus       140 ~i~~~~~~~~~~~l~~L~~L~l~~n~~~~  168 (603)
                      .+++ ++...|..+++|++|++++|++.+
T Consensus        89 ~l~~-~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           89 QLKS-IPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCC-CCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ccCE-eCHHHhcCCCCCCEEEeCCCCCCC
Confidence            7763 444467777777777777777653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=1.4e-12  Score=116.13  Aligned_cols=105  Identities=28%  Similarity=0.320  Sum_probs=76.8

Q ss_pred             CEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc
Q 036984           61 QELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ  140 (603)
Q Consensus        61 ~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~  140 (603)
                      +.+++++|.++.++...  .++|++|++++|++.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            56777777777766654  3677777777777777667777777778888888887776655667777788888888887


Q ss_pred             CCccCCcccccCCCCCcEEEccCceeee
Q 036984          141 LTESISSSPLMLLTSIEELILSNNHFQI  168 (603)
Q Consensus       141 i~~~~~~~~~~~l~~L~~L~l~~n~~~~  168 (603)
                      ++ .++...+..+++|++|++++|++..
T Consensus        93 l~-~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           93 LK-SIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             cc-eeCHHHhccccCCCEEEeCCCCccc
Confidence            77 4555467777788888888877653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=1.4e-15  Score=139.29  Aligned_cols=63  Identities=24%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCC-cCCcCCCCCCEEeCCCCcCccc
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP-ITFSNLKQIESLDLSYNLLHGK  463 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~  463 (603)
                      +++|+.|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++.
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            3455555555555553 22 34555555555555555553221 2344555555555555555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.40  E-value=3e-11  Score=123.08  Aligned_cols=109  Identities=17%  Similarity=0.216  Sum_probs=71.3

Q ss_pred             cccCCCC-CCCEEEccCCcCCCCccCccc-CCCCCEEEccCCC---CCcCCchhhcCCCCCcEEeccCCCCccCcCccCC
Q 036984           52 QGFCQLV-HLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNK---LTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLT  126 (603)
Q Consensus        52 ~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  126 (603)
                      .+|.++. .|+.+.+..+ ++.|...+|. +.+|+.+.+..+.   ++.+...+|.++.+|+.+.+..+ ++.+...+|.
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~  134 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH  134 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred             hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence            4566664 4777777653 7777777777 7777777776653   55555567777777777766654 3435556677


Q ss_pred             CCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCc
Q 036984          127 NLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNN  164 (603)
Q Consensus       127 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n  164 (603)
                      ++.+|+.+.+..+ +. .+....|..+.+|+.+.+..+
T Consensus       135 ~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          135 HCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             TCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT
T ss_pred             hhcccccccccce-ee-eecccceecccccccccccce
Confidence            7777777777543 22 345556777777777776554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=7.9e-15  Score=134.20  Aligned_cols=151  Identities=19%  Similarity=0.259  Sum_probs=103.8

Q ss_pred             CCccEEEccCccccccCCh------hhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccC
Q 036984          254 QKLATLDVSNNFFQGHIPV------EIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEI  327 (603)
Q Consensus       254 ~~L~~L~Ls~n~~~~~~~~------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (603)
                      +.++.++++.+.+.+.+|.      .+. .+++|+.|++++|.+.++         | .+..+++|++|++++|.++ .+
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~l---------~-~~~~l~~L~~L~l~~n~l~-~l   85 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEKI---------S-SLSGMENLRILSLGRNLIK-KI   85 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESCC---------C-CHHHHTTCCEEEEEEEEEC-SC
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCccc---------c-ccccCCCCCEEECCCCCcc-cc
Confidence            3444444444444443332      333 377788877777766532         3 4556788888888888887 45


Q ss_pred             CccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEEC
Q 036984          328 PAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDL  407 (603)
Q Consensus       328 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  407 (603)
                      |..+..+++|+.|++++|++++ +|                                          .+..+++|+.|++
T Consensus        86 ~~~~~~~~~L~~L~L~~N~l~~-l~------------------------------------------~~~~l~~L~~L~l  122 (198)
T 1ds9_A           86 ENLDAVADTLEELWISYNQIAS-LS------------------------------------------GIEKLVNLRVLYM  122 (198)
T ss_dssp             SSHHHHHHHCSEEEEEEEECCC-HH------------------------------------------HHHHHHHSSEEEE
T ss_pred             cchhhcCCcCCEEECcCCcCCc-CC------------------------------------------ccccCCCCCEEEC
Confidence            6666777888888888888863 11                                          2445778889999


Q ss_pred             cCCCCcccCc-hhccCcCcCCEEecccccccccCCcC----------CcCCCCCCEEeCCCCcCc
Q 036984          408 SCNKLTGEIP-TQIGYLTRIRALNLSHNNLTGTIPIT----------FSNLKQIESLDLSYNLLH  461 (603)
Q Consensus       408 s~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~  461 (603)
                      ++|.+++..+ ..+..+++|++|++++|.+++..|..          +..+++|+.||  +|.++
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            9998885433 46888999999999999998765543          66778888877  66655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.33  E-value=1.4e-10  Score=118.07  Aligned_cols=92  Identities=10%  Similarity=0.096  Sum_probs=67.7

Q ss_pred             CCCCccCccc-CC-CCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCC---CccCcCccCCCCCCCCEEEcccCcCCcc
Q 036984           70 LRDSLLGAWQ-TT-SLQELNVASNKLTRNFPLGLCELVLLRELYIDNND---LSGSLPLCLTNLTSLQVLDVSYNQLTES  144 (603)
Q Consensus        70 i~~~~~~~~~-~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~i~~~  144 (603)
                      ++.|...+|. ++ .|+.+.+-.+ ++.+...+|.++.+|+.+.+..+.   ++.+...+|.++.+|+.+.+..+ ++ .
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~  127 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-E  127 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-E
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-e
Confidence            5677778887 54 5888888654 666677788888888888887763   55566677888888888777654 44 4


Q ss_pred             CCcccccCCCCCcEEEccCc
Q 036984          145 ISSSPLMLLTSIEELILSNN  164 (603)
Q Consensus       145 ~~~~~~~~l~~L~~L~l~~n  164 (603)
                      +...+|..+.+|+.+.+..+
T Consensus       128 I~~~aF~~c~~L~~i~lp~~  147 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPEG  147 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT
T ss_pred             ehhhhhhhhcccccccccce
Confidence            55557888888888887654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=7.2e-12  Score=125.43  Aligned_cols=103  Identities=16%  Similarity=0.205  Sum_probs=49.4

Q ss_pred             EECcCC-CCcccCchhccCcCcCCEEeccc-ccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccC
Q 036984          405 IDLSCN-KLTGEIPTQIGYLTRIRALNLSH-NNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYN  481 (603)
Q Consensus       405 L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N  481 (603)
                      ++++++ +++ .+|. +..+++|++|+|++ |.|++..+..|.++++|+.|+|++|+|++.+| .|..+++|+.|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            344444 444 2343 55555555555553 55554444445555555555555555554444 3444555555555555


Q ss_pred             cccccCCCcccccCCCCcccccCCcCCCC
Q 036984          482 NLSGKIPDRVAQFSTFEEDSYEGNPFLYG  510 (603)
Q Consensus       482 ~l~~~~p~~~~~l~~l~~~~l~gn~~~c~  510 (603)
                      ++++..|..+..++ ++.+++.+|++.|.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            55533333333332 45555555555553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=1.9e-14  Score=144.59  Aligned_cols=141  Identities=21%  Similarity=0.171  Sum_probs=82.1

Q ss_pred             HHHHhcCCCcEEEccCCcCCCCCC--CccccC-CCCCCCEEEccCCcCCCCccCccc--CCCCCEEEccCCCCCcCCchh
Q 036984           26 IVSELMASLRLLSLSYSRLNKNTI--LDQGFC-QLVHLQELYIRDNDLRDSLLGAWQ--TTSLQELNVASNKLTRNFPLG  100 (603)
Q Consensus        26 ~~~~~~~~L~~L~Ls~n~i~~~~~--~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~  100 (603)
                      ++...++.|+.|+|++|.++....  +...+. ..++|++|+|++|.+++.....+.  +++|++|+|++|.++......
T Consensus        66 l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~  145 (372)
T 3un9_A           66 FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD  145 (372)
T ss_dssp             HHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred             HHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence            344556788888888888764211  111222 336788888888877654443333  567778888888776543333


Q ss_pred             h-----cCCCCCcEEeccCCCCccC----cCccCCCCCCCCEEEcccCcCCccC----CcccccCCCCCcEEEccCceee
Q 036984          101 L-----CELVLLRELYIDNNDLSGS----LPLCLTNLTSLQVLDVSYNQLTESI----SSSPLMLLTSIEELILSNNHFQ  167 (603)
Q Consensus       101 ~-----~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~~l~~L~~L~l~~n~~~  167 (603)
                      +     ...++|++|+|++|.++..    ++.++..+++|++|+|++|.+++..    +. .+...++|++|++++|.++
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCC
T ss_pred             HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCC
Confidence            3     2356677777777776532    2233455666777777777665311    11 3344455666666555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=2.3e-13  Score=136.78  Aligned_cols=14  Identities=36%  Similarity=0.484  Sum_probs=5.9

Q ss_pred             CCCCEEeCCCCcCc
Q 036984          448 KQIESLDLSYNLLH  461 (603)
Q Consensus       448 ~~L~~L~Ls~N~l~  461 (603)
                      ++|++||+++|.|+
T Consensus       239 ~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          239 PSLELLHLYFNELS  252 (372)
T ss_dssp             SSCCEEECTTSSCC
T ss_pred             CCCCEEeccCCCCC
Confidence            34444444444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=7.8e-11  Score=117.85  Aligned_cols=105  Identities=26%  Similarity=0.247  Sum_probs=69.0

Q ss_pred             EEEccCC-cCCCCccCccc-CCCCCEEEccC-CCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEccc
Q 036984           62 ELYIRDN-DLRDSLLGAWQ-TTSLQELNVAS-NKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY  138 (603)
Q Consensus        62 ~L~Ls~n-~i~~~~~~~~~-~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  138 (603)
                      .++++++ +++.+|.  +. +++|++|+|++ |.+.++.+..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3466665 6666655  43 66677777765 677766666677777777777777777766666677777777777777


Q ss_pred             CcCCccCCcccccCCCCCcEEEccCceeeeec
Q 036984          139 NQLTESISSSPLMLLTSIEELILSNNHFQIPI  170 (603)
Q Consensus       139 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  170 (603)
                      |+++ .+|...+..++ |+.|++.+|.+.+..
T Consensus        90 N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           90 NALE-SLSWKTVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             SCCS-CCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred             Cccc-eeCHHHcccCC-ceEEEeeCCCccCCC
Confidence            7776 35543555444 777777777766443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.08  E-value=1.4e-08  Score=102.65  Aligned_cols=63  Identities=10%  Similarity=0.142  Sum_probs=40.0

Q ss_pred             hhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCC
Q 036984          395 TVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN  458 (603)
Q Consensus       395 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  458 (603)
                      .|..+++|+.+.+.++.++.....+|.++++|+.+.|.++ ++.+...+|.++.+|+.+.+..+
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            3445566666666666666555566777777777777644 55455566777777777777554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.05  E-value=2e-08  Score=101.65  Aligned_cols=84  Identities=10%  Similarity=0.086  Sum_probs=55.1

Q ss_pred             hhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCC
Q 036984          396 VQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLA  474 (603)
Q Consensus       396 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~  474 (603)
                      +..+.+|+.+.+..+ +......+|.++++|+.+.+.++.++.+...+|.++.+|+.+++..+ ++.... .|..+++|+
T Consensus       259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence            444556666666543 44345556777777888888777777666677777778888877654 442333 677777777


Q ss_pred             ceecccC
Q 036984          475 VFRVAYN  481 (603)
Q Consensus       475 ~L~l~~N  481 (603)
                      .+.+..+
T Consensus       337 ~i~ip~~  343 (379)
T 4h09_A          337 TISYPKS  343 (379)
T ss_dssp             CCCCCTT
T ss_pred             EEEECCc
Confidence            7777543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=7.5e-09  Score=102.89  Aligned_cols=63  Identities=13%  Similarity=0.260  Sum_probs=32.9

Q ss_pred             cccceEEECcCCCCcccCchhcc---CcCcCCEEeccccccccc----CCcCCcCCCCCCEEeCCCCcCc
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIG---YLTRIRALNLSHNNLTGT----IPITFSNLKQIESLDLSYNLLH  461 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  461 (603)
                      +++|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            45666666666666543322222   355666666666665542    2222234455666666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=2.6e-08  Score=99.07  Aligned_cols=59  Identities=20%  Similarity=0.314  Sum_probs=32.9

Q ss_pred             cccceEEECcCCCCcccC----chhccCcCcCCEEecccccccccCCcCCcC-CCCCCEEeCCCCc
Q 036984          399 LTSMSGIDLSCNKLTGEI----PTQIGYLTRIRALNLSHNNLTGTIPITFSN-LKQIESLDLSYNL  459 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~  459 (603)
                      ++.|+.|+|+.|.+++..    +..+..+++|+.|+|++|.|++.....+.. +  ..++|++++.
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            456666777666666432    223345567777777777666433332322 1  3456777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=2e-08  Score=90.01  Aligned_cols=41  Identities=15%  Similarity=0.077  Sum_probs=19.9

Q ss_pred             cCCCCCCEEeccCC-cCccc----CCccccCCCCCCEEecCCCcCc
Q 036984          308 DRLPQISYLLLANN-YIEGE----IPAQLCQLKEVRLIDLSHNNLS  348 (603)
Q Consensus       308 ~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  348 (603)
                      ...+.|++|+|++| .+...    +...+...++|++|+|++|.+.
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            33455555555555 44322    2223344455555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.47  E-value=7.2e-08  Score=90.73  Aligned_cols=66  Identities=24%  Similarity=0.241  Sum_probs=32.6

Q ss_pred             HhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCcc-Cccc-CCCCCEEEccCCCCCc
Q 036984           29 ELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLL-GAWQ-TTSLQELNVASNKLTR   95 (603)
Q Consensus        29 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~-~~~L~~L~Ls~n~l~~   95 (603)
                      +.+++|+.|+|++|++++...++..+..+++|+.|+|++|.++++.. ..+. + +|++|++++|.+.+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            34566666666666665432223334455666666666665554411 1111 1 55555555555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=3.5e-08  Score=88.43  Aligned_cols=121  Identities=12%  Similarity=0.155  Sum_probs=90.3

Q ss_pred             CCccccCCCCCCEEecCCC-cCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEE
Q 036984          327 IPAQLCQLKEVRLIDLSHN-NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI  405 (603)
Q Consensus       327 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  405 (603)
                      +...+...+.|++|+|++| .+.......+                                     ...+...++|++|
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l-------------------------------------~~~L~~~~~L~~L   70 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKAC-------------------------------------AEALKTNTYVKKF   70 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHH-------------------------------------HHHHTTCCSCCEE
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHH-------------------------------------HHHHHhCCCcCEE
Confidence            3456677899999999999 8863211111                                     1223345789999


Q ss_pred             ECcCCCCcccC----chhccCcCcCCEEeccccccccc----CCcCCcCCCCCCEEeC--CCCcCcccCC-----CccCC
Q 036984          406 DLSCNKLTGEI----PTQIGYLTRIRALNLSHNNLTGT----IPITFSNLKQIESLDL--SYNLLHGKIP-----QLIVL  470 (603)
Q Consensus       406 ~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~~~-----~~~~l  470 (603)
                      +|++|.+.+..    ...+...++|++|+|++|.|++.    +...+...++|++|++  ++|.+.....     .+...
T Consensus        71 ~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n  150 (185)
T 1io0_A           71 SIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN  150 (185)
T ss_dssp             ECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC
T ss_pred             ECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence            99999998543    34455668999999999999863    4566777889999999  8899985422     45567


Q ss_pred             CCCCceecccCccc
Q 036984          471 TTLAVFRVAYNNLS  484 (603)
Q Consensus       471 ~~L~~L~l~~N~l~  484 (603)
                      ++|++|++++|.+.
T Consensus       151 ~~L~~L~L~~n~i~  164 (185)
T 1io0_A          151 TTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCCSSHH
T ss_pred             CCcCEEeccCCCCC
Confidence            89999999999886

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=6.7e-07  Score=84.14  Aligned_cols=65  Identities=25%  Similarity=0.355  Sum_probs=37.1

Q ss_pred             hcccceEEECcCCCCcc--cCchhccCcCcCCEEecccccccccCCcCCcCCC--CCCEEeCCCCcCcccC
Q 036984          398 ILTSMSGIDLSCNKLTG--EIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLK--QIESLDLSYNLLHGKI  464 (603)
Q Consensus       398 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~  464 (603)
                      .+++|+.|+|++|.+++  .++..+..+++|+.|+|++|+|++.  ..+..+.  +|++|++++|++.+.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence            45666666676666665  2334455666666666666666643  2222222  5666666666665443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.10  E-value=1e-06  Score=76.74  Aligned_cols=82  Identities=12%  Similarity=0.103  Sum_probs=40.2

Q ss_pred             CCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCC-CCcCCchhhcCC----CCCcEEeccCCC-CccCcCccCCCCCC
Q 036984           58 VHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNK-LTRNFPLGLCEL----VLLRELYIDNND-LSGSLPLCLTNLTS  130 (603)
Q Consensus        58 ~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-i~~~~~~~~~~l~~  130 (603)
                      .+|+.||++++.+++.....+. +++|++|+|++|. +++..-..+..+    ++|++|+|++|. +++..-..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            3455555555555544444444 5555555555553 333222233332    245555555553 44333334445555


Q ss_pred             CCEEEcccC
Q 036984          131 LQVLDVSYN  139 (603)
Q Consensus       131 L~~L~L~~n  139 (603)
                      |++|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.98  E-value=3.4e-06  Score=73.43  Aligned_cols=36  Identities=17%  Similarity=0.045  Sum_probs=23.0

Q ss_pred             CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCc
Q 036984          311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNN  346 (603)
Q Consensus       311 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  346 (603)
                      .+|+.||+++|.+++..-..+.++++|+.|+|++|.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            356666666666665555555666677777776664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.50  E-value=0.00018  Score=59.59  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=18.9

Q ss_pred             CCceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984          473 LAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY  509 (603)
Q Consensus       473 L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c  509 (603)
                      |+.|+|++|+|+..-+..+..++.++.+++++|||.|
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            4444444444443333334455555556666666666

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.42  E-value=4.4e-05  Score=67.74  Aligned_cols=18  Identities=22%  Similarity=0.499  Sum_probs=8.6

Q ss_pred             ccCCCCCCEEecCCCcCc
Q 036984          331 LCQLKEVRLIDLSHNNLS  348 (603)
Q Consensus       331 ~~~l~~L~~L~Ls~n~l~  348 (603)
                      +..-+.|+.|+|++|++.
T Consensus        66 L~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             HTTCSCCCEEECTTSCCB
T ss_pred             HhhCCCcCEEEccCCCCC
Confidence            333444555555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.21  E-value=0.0001  Score=65.37  Aligned_cols=88  Identities=13%  Similarity=0.104  Sum_probs=62.8

Q ss_pred             hhcccceEEECcCCCCcccC----chhccCcCcCCEEeccccccccc----CCcCCcCCCCCCEEeCCCCc---Cccc--
Q 036984          397 QILTSMSGIDLSCNKLTGEI----PTQIGYLTRIRALNLSHNNLTGT----IPITFSNLKQIESLDLSYNL---LHGK--  463 (603)
Q Consensus       397 ~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~---l~~~--  463 (603)
                      ..-+.|+.|+|++|.+.+..    ...+..-+.|++|+|++|.|++.    +.+.+..-+.|++|+|++|.   +...  
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~  146 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  146 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence            34578999999999998543    34455668899999999999853    33446666789999998763   3322  


Q ss_pred             --CC-CccCCCCCCceecccCccc
Q 036984          464 --IP-QLIVLTTLAVFRVAYNNLS  484 (603)
Q Consensus       464 --~~-~~~~l~~L~~L~l~~N~l~  484 (603)
                        +. .+..-++|+.|+++.|.+.
T Consensus       147 ~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          147 MDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHhCCCcCeEeccCCCcc
Confidence              22 4556788888988877643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.85  E-value=0.0024  Score=52.79  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=14.7

Q ss_pred             CcEEeccCCCCccCcCccCCCCCCCCEEEcccCcC
Q 036984          107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQL  141 (603)
Q Consensus       107 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i  141 (603)
                      |++|+|++|+|+.+.+..|..+++|+.|+|++|.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            44444444444433333344444444444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	603
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-24
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	9e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  102 bits (253), Expect = 6e-24
 Identities = 55/377 (14%), Positives = 124/377 (32%), Gaps = 25/377 (6%)

Query: 110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIP 169
             +   +++ ++    T+L  +  L      +    S   +  L ++ ++  SNN     
Sbjct: 27  TVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLT-- 79

Query: 170 ISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDL 229
             + PL NL+KL           +    +        ++  +   D              
Sbjct: 80  -DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 138

Query: 230 K-NADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSR 288
             +  +S ++      +        Q      ++N      + +         +   L+ 
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198

Query: 289 NAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS 348
                 + N++    P  I     +  L L  N ++      L  L  +  +DL++N +S
Sbjct: 199 LESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254

Query: 349 GHIPFC----LVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSG 404
              P      L    L       ++P        AL+    N + +     +  L +++ 
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGL---TALTNLELNENQLEDISPISNLKNLTY 311

Query: 405 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI 464
           + L  N ++   P  +  LT+++ L  ++N ++     + +NL  I  L   +N +    
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 367

Query: 465 PQLIVLTTLAVFRVAYN 481
           P L  LT +    +   
Sbjct: 368 P-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 96.2 bits (238), Expect = 4e-22
 Identities = 83/385 (21%), Positives = 149/385 (38%), Gaps = 34/385 (8%)

Query: 84  QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE 143
           +++     K      +   +L  +  L  D   +  S+   +  L +L  ++ S NQLT+
Sbjct: 23  EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD 80

Query: 144 SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKF 203
                PL  LT + +++++NN       L  L+NL+ L  FN +I         +   + 
Sbjct: 81  IT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 204 QLTSISLSGYRDDGTFPKFLYHQHDLKN------ADLSHLNLSGEFPNWLMPIHCLQKLA 257
           +L+S ++S                  +       A+L+ L       N +  I  L KL 
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 258 ---TLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQIS 314
              +L  +NN      P+ I T L  L            L+ N+L+      +  L  ++
Sbjct: 198 NLESLIATNNQISDITPLGILTNLDEL-----------SLNGNQLKD--IGTLASLTNLT 244

Query: 315 YLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFC-LVNTALSEGYYDAVAPTWD 373
            L LANN I    P  L  L ++  + L  N +S   P   L      E   + +     
Sbjct: 245 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 302

Query: 374 HASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 433
            ++   L+Y +   + +     V  LT +  +  + NK++    + +  LT I  L+  H
Sbjct: 303 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 434 NNLTGTIPITFSNLKQIESLDLSYN 458
           N ++   P   +NL +I  L L+  
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 22/207 (10%)

Query: 84  QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE 143
           + L   +N+++   PLG+     L EL ++ N L       L +LT+L  LD++ NQ++ 
Sbjct: 200 ESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 144 SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKF 203
                PL  LT + EL L  N       L  L+ L+ L+    ++   +           
Sbjct: 256 LA---PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 204 QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSN 263
            L   ++S      +  K       L+    ++  +S      +  +  L  +  L   +
Sbjct: 313 TLYFNNISDISPVSSLTK-------LQRLFFANNKVSD-----VSSLANLTNINWLSAGH 360

Query: 264 NFFQGHIPVEIGTYLPGLMHLNLSRNA 290
           N      P+     L  +  L L+  A
Sbjct: 361 NQISDLTPLA---NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 3e-10
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 11/164 (6%)

Query: 1   FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHL 60
             +   L  L     L   N       S L     L  L+  +L  N I +      +  
Sbjct: 231 LKDIGTLASLTNLTDLDLANNQI----SNLAPLSGLTKLTELKLGANQISNISPLAGLTA 286

Query: 61  QELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGS 120
                 + +  + +       +L  L +  N ++   P+    L  L+ L+  NN +S  
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD- 343

Query: 121 LPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNN 164
               L NLT++  L   +NQ+++     PL  LT I +L L++ 
Sbjct: 344 -VSSLANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.5 bits (122), Expect = 2e-07
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 9/155 (5%)

Query: 28  SELMASLRLLSLSYSRLNKNTILDQG-FCQLVHLQELYIRDNDLRDSLLGAWQTTSLQEL 86
           S++     L +L    LN N + D G    L +L +L + +N + + L      T L EL
Sbjct: 210 SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTEL 268

Query: 87  NVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESIS 146
            + +N+++   PL     +   EL  +  +        ++NL +L  L + +N +++   
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISDIS- 323

Query: 147 SSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKL 181
             P+  LT ++ L  +NN      SL  L+N++ L
Sbjct: 324 --PVSSLTKLQRLFFANNKVSDVSSLANLTNINWL 356

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.5 bits (189), Expect = 3e-16
 Identities = 57/259 (22%), Positives = 89/259 (34%), Gaps = 24/259 (9%)

Query: 229 LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSR 288
           + N DLS LNL   +P     +  L  L  L +                L  L +L ++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 289 NAF----------------NDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPA--- 329
                               D SYN L G++P  I  LP +  +    N I G IP    
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 330 ---QLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPN 386
              +L     +    L+           L    LS    +  A     +           
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 387 GSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSN 446
            S       V +  +++G+DL  N++ G +P  +  L  + +LN+S NNL G IP    N
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGN 289

Query: 447 LKQIESLDLSYNLLHGKIP 465
           L++ +    + N      P
Sbjct: 290 LQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 40/267 (14%), Positives = 78/267 (29%), Gaps = 39/267 (14%)

Query: 126 TNLTSLQVLDVSYNQLTESISSSP-LMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAF 184
           T    +  LD+S   L +       L  L  +  L +   +  +      ++ L++L   
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 185 NGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFP 244
                  + +  + L+    L ++  S     GT P  +    +L         +SG  P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 245 NWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGL----------------------- 281
           +       L    T+  +    +                                     
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 282 ------------MHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPA 329
                                  DL  NR+ G++P  + +L  +  L ++ N + GEIP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285

Query: 330 QLCQLKEVRLIDLSHNNL--SGHIPFC 354
           Q   L+   +   ++N       +P C
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 111 YIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPI 170
            + NN + G+LP  LT L  L  L+VS+N L   I       L   +    +NN      
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGS 307

Query: 171 SLEPLS 176
            L   +
Sbjct: 308 PLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 78  WQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVS 137
             + +L  L++ +N++    P GL +L  L  L +  N+L G +P    NL    V   +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299

Query: 138 YNQL 141
            N+ 
Sbjct: 300 NNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 52/261 (19%), Positives = 84/261 (32%), Gaps = 27/261 (10%)

Query: 34  LRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRD--NDLRDSLLGAWQTTSLQELNVASN 91
           +  L LS   L K   +      L +L  LYI    N +        + T L  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 92  KLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLM 151
            ++   P  L ++  L  L    N LSG+LP  +++L +L  +    N+++ +I  S   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 152 LLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQL------ 205
                  + +S N     I     +        +  +     S         Q       
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 206 ---------------TSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPI 250
                            + L   R  GT P+ L     L + ++S  NL GE P      
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN-- 289

Query: 251 HCLQKLATLDVSNNFFQGHIP 271
             LQ+      +NN      P
Sbjct: 290 --LQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 15/56 (26%), Positives = 19/56 (33%)

Query: 47  NTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLC 102
              L QG  QL  L  L +  N+L   +              A+NK     PL  C
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 6e-11
 Identities = 48/275 (17%), Positives = 83/275 (30%), Gaps = 27/275 (9%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
                L++ +NK+T         L  L  L + NN +S   P     L  L+ L +S NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLKAFNGEIYLETESHYNSL 199
           L       P  +  +++EL +  N    +  S+    N   +          +     + 
Sbjct: 91  LK----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 200 TPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATL 259
               +L+ I ++                 L    L    ++      L  ++ L K   L
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAK---L 200

Query: 260 DVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLA 319
            +S N              P L  L+L+ N             +P  +     I  + L 
Sbjct: 201 GLSFNSISAVDN-GSLANTPHLRELHLNNNKLVK---------VPGGLADHKYIQVVYLH 250

Query: 320 NNYIEG------EIPAQLCQLKEVRLIDLSHNNLS 348
           NN I          P    +      + L  N + 
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.9 bits (141), Expect = 4e-10
 Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 23/221 (10%)

Query: 249 PIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID 308
           P  C   L  +  S+   +  +P ++      L           DL  N++         
Sbjct: 5   PFRCQCHLRVVQCSDLGLE-KVPKDLPPDTALL-----------DLQNNKITEIKDGDFK 52

Query: 309 RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAV 368
            L  +  L+L NN I    P     L ++  + LS N L   +P  +  T      ++  
Sbjct: 53  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENE 111

Query: 369 APTWDHASAPALSYFS-------PNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIG 421
                 +    L+          P  S   +    Q +  +S I ++   +T  IP   G
Sbjct: 112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--G 168

Query: 422 YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG 462
               +  L+L  N +T     +   L  +  L LS+N +  
Sbjct: 169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 49/334 (14%), Positives = 91/334 (27%), Gaps = 47/334 (14%)

Query: 130 SLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY 189
            L+V+  S   L       P  L      L L NN     I      NL  L        
Sbjct: 11  HLRVVQCSDLGLE----KVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINN 65

Query: 190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMP 249
             ++    +  P  +L  + LS  +      K      +L+  +     +     N L  
Sbjct: 66  KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

Query: 250 IHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDR 309
           +  ++    L  +     G         +  L ++ ++              +IP  +  
Sbjct: 126 MIVVE----LGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNIT---------TIPQGL-- 169

Query: 310 LPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVA 369
            P ++ L L  N I     A L  L  +  + LS N++S                     
Sbjct: 170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD------------------ 211

Query: 370 PTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG------EIPTQIGYL 423
                 +         N   +     +     +  + L  N ++         P      
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271

Query: 424 TRIRALNLSHNNLTGT--IPITFSNLKQIESLDL 455
                ++L  N +      P TF  +    ++ L
Sbjct: 272 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 46/263 (17%), Positives = 89/263 (33%), Gaps = 14/263 (5%)

Query: 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISY 315
            A LD+ NN        +    L  L  L         L  N++    P     L ++  
Sbjct: 33  TALLDLQNNKITEIKDGDFKN-LKNLHTL--------ILINNKISKISPGAFAPLVKLER 83

Query: 316 LLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHA 375
           L L+ N ++         L+E+R+ +     +   +   L    + E   + +  +    
Sbjct: 84  LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143

Query: 376 SA----PALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL 431
            A      LSY     + +       +  S++ + L  NK+T      +  L  +  L L
Sbjct: 144 GAFQGMKKLSYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 432 SHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRV 491
           S N+++     + +N   +  L L+ N L      L     + V  +  NN+S    +  
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 492 AQFSTFEEDSYEGNPFLYGQPLS 514
                  + +      L+  P+ 
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 27/184 (14%), Positives = 52/184 (28%), Gaps = 9/184 (4%)

Query: 7   LEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIR 66
              L    ++            E  A   +  LSY R+    I          L EL++ 
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 179

Query: 67  DNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLT 126
            N +      + +  +       S         G             NN+    +P  L 
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

Query: 127 NLTSLQVLDVSYNQLTESISSS-----PLMLLTSIEELILSNNHFQI----PISLEPLSN 177
           +   +QV+ +  N ++   S+            S   + L +N  Q     P +   +  
Sbjct: 240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

Query: 178 LSKL 181
            + +
Sbjct: 300 RAAV 303

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (147), Expect = 1e-10
 Identities = 50/448 (11%), Positives = 113/448 (25%), Gaps = 34/448 (7%)

Query: 80  TTSLQELNVASNKLTRNFPLGLCE-LVLLRELYIDNNDLSG----SLPLCLTNLTSLQVL 134
           +  +Q L++   +L+      L   L   + + +D+  L+      +   L    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 135 DVSYNQLT----ESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYL 190
           ++  N+L       +          I++L L N            S L  L         
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 191 ETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLN------------ 238
           +       L    +                  L        A +                
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 239 --LSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSY 296
              +G             +L  L + +         ++   +     L       N L  
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 297 NRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLV 356
             +    P  +    ++  L +    I  +    LC++   +      +     +     
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 357 NTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEI 416
                               + + +    +       +   +L      +   +    E+
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 417 -PTQIGYLTRIRALNLSHNNLTGT----IPITFSNLKQIESLDLSYNLLHGKIPQLIV-- 469
                   + +R L L+  +++ +    +  T      +  LDLS N L       +V  
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 470 ----LTTLAVFRVAYNNLSGKIPDRVAQ 493
                  L    +     S ++ DR+  
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (132), Expect = 9e-09
 Identities = 49/450 (10%), Positives = 102/450 (22%), Gaps = 20/450 (4%)

Query: 33  SLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-----WQTTSLQELN 87
            ++ L +    L+ +    +    L   Q + + D  L ++             +L ELN
Sbjct: 3   DIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 88  VASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISS 147
           + SN+L       + + +      I    L                L          +S 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 148 SPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTS 207
           + L             +       L+         +      +                 
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 208 ISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQ 267
                                LK       + +      ++      +      SN    
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE-LALGSNKLGD 240

Query: 268 GHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEI 327
             +       L     L      +      +  G +   +     +  L LA N +  E 
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWI-WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 328 PAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG 387
              LC+        L    +          +  S              S   L       
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 388 SPMGKEETVQILTSMSGIDLSCNKLTGE----IPTQIGYLTRIRALNLSHNNLTGTIPIT 443
              G  +   +L     + L+   ++      +   +     +R L+LS+N L     + 
Sbjct: 360 LCQGLGQPGSVLRV---LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 444 FS-----NLKQIESLDLSYNLLHGKIPQLI 468
                      +E L L       ++   +
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 6/116 (5%)

Query: 224 YHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYL---PG 280
                      + L  +G              L  L +++          +   L     
Sbjct: 339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 398

Query: 281 LMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKE 336
           L  L+LS N   D    +L  S+      L     L+L + Y   E+  +L  L++
Sbjct: 399 LRELDLSNNCLGDAGILQLVESVRQPGCLL---EQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 59  HLQELYIRDNDLRDSLLGAW-----QTTSLQELNVASNKLTRNFPLGLCELV-----LLR 108
            L+ L++ D D+ DS   +         SL+EL++++N L     L L E V     LL 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 109 ELYIDNNDLSGSLPLCLTNL 128
           +L + +   S  +   L  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 40/339 (11%), Positives = 79/339 (23%), Gaps = 61/339 (17%)

Query: 124 CLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKA 183
           C+               L     + P+ +  + + + L  N     +          L  
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ----AVPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTI 60

Query: 184 FNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEF 243
                 +                               F       +     +  L    
Sbjct: 61  LWLHSNVLARIDAA-----------------------AFTGLALLEQLDLSDNAQLRSVD 97

Query: 244 PNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSI 303
           P     +  L  L            H+       L   +   L+   +  L  N LQ   
Sbjct: 98  PATFHGLGRLHTL------------HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 304 PNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEG 363
            +    L  +++L L  N I          L  +  + L  N ++   P           
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP----------- 194

Query: 364 YYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYL 423
                   +         Y   N       E +  L ++  + L+ N    +        
Sbjct: 195 ------HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLW 247

Query: 424 TRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG 462
             ++    S + +  ++P     L   +   L+ N L G
Sbjct: 248 AWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 7e-07
 Identities = 33/255 (12%), Positives = 70/255 (27%), Gaps = 17/255 (6%)

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166
            + +++  N +S           +L +L +  N L    +++   L    +   LS+N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL-DLSDNAQ 92

Query: 167 QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQ 226
              +       L +L   + +     E           L  + L                
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKL------------ATLDVSNNFFQGHIPVEI 274
            +L +  L    +S         +H L +L                        ++    
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 275 GTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQL 334
            + LP      L    +  L+ N               +     +++ +   +P    +L
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ---RL 268

Query: 335 KEVRLIDLSHNNLSG 349
               L  L+ N+L G
Sbjct: 269 AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 39/266 (14%), Positives = 72/266 (27%), Gaps = 28/266 (10%)

Query: 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNL 286
              +   L    +S            L                    +            
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLT-----------ILWLHSNVLARIDAAAFTGLA 80

Query: 287 SRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNN 346
                +     +L+   P     L ++  L L    ++   P     L  ++ + L  N 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 347 LSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGID 406
           L                         D  +   L +   N      E   + L S+  + 
Sbjct: 141 LQALPDDTF----------------RDLGNLTHL-FLHGNRISSVPERAFRGLHSLDRLL 183

Query: 407 LSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ 466
           L  N++    P     L R+  L L  NNL+       + L+ ++ L L+ N        
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

Query: 467 LIVLTTLAVFRVAYNNLSGKIPDRVA 492
             +   L  FR + + +   +P R+A
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLPQRLA 269

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 34/221 (15%)

Query: 49  ILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLTRNFPLGLCELVLL 107
           +    F  L  L  L++    L++   G ++   +LQ L +  N L         +L  L
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

Query: 108 RELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ 167
             L++  N +S         L SL  L +  N++      +   L   +   + +NN   
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 168 IPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQH 227
           +                             +L P   L  + L+         +      
Sbjct: 216 L--------------------------PTEALAPLRALQYLRLNDNPWVCD-CRARPLWA 248

Query: 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQG 268
            L+    S   +    P        L       ++ N  QG
Sbjct: 249 WLQKFRGSSSEVPCSLPQR------LAGRDLKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 31/221 (14%), Positives = 54/221 (24%), Gaps = 17/221 (7%)

Query: 245 NWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIP 304
           + +  +  +     ++         +P ++      L            LS N L     
Sbjct: 1   HPICEVSKVASHLEVNCDKRNLT-ALPPDLPKDTTIL-----------HLSENLLYTFSL 48

Query: 305 NWIDRLPQISYLLLANNYIEGEIP----AQLCQLKEVRLIDLSHNNLSGHIPFCLVNTAL 360
             +    +++ L L    +           L  L        S   L   +P   V    
Sbjct: 49  ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108

Query: 361 SEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI 420
                                Y   N         +     +  + L+ N LT      +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168

Query: 421 GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461
             L  +  L L  N+L  TIP  F     +    L  N   
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 33/195 (16%), Positives = 65/195 (33%), Gaps = 7/195 (3%)

Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIP 352
           +     L  ++P  +      + L L+ N +     A L     +  ++L    L+    
Sbjct: 16  NCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 353 FC----LVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLS 408
                 L    LS     ++        A  +   S N         ++ L  +  + L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 409 CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLI 468
            N+L    P  +    ++  L+L++NNLT       + L+ +++L L  N L+       
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

Query: 469 VLTTLAVFRVAYNNL 483
               L    +  N  
Sbjct: 193 GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 44/214 (20%), Positives = 71/214 (33%), Gaps = 13/214 (6%)

Query: 79  QTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY 138
           +  S  E+N     LT   P  L +      L++  N L       L   T L  L++  
Sbjct: 8   KVASHLEVNCDKRNLTA-LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 139 NQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNS 198
            +LT+      L +L +++      +H Q+         L  L   +      T     +
Sbjct: 65  AELTKLQVDGTLPVLGTLD-----LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 199 LTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLAT 258
           L    +L  + L G       P  L     L+   L++ NL+      L   + L+ L T
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL---NGLENLDT 176

Query: 259 LDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN 292
           L +  N     IP         L    L  N + 
Sbjct: 177 LLLQENSLY-TIPKGFFG-SHLLPFAFLHGNPWL 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 38/269 (14%), Positives = 88/269 (32%), Gaps = 13/269 (4%)

Query: 84  QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE 143
           Q L++    L  +    L     +       + +   L    +    +Q +D+S + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60

Query: 144 SISSSPLMLLTSIEELILSNNHF--QIPISLEPLSNLSKLKAF--NGEIYLETESHYNSL 199
           S     L   + ++ L L        I  +L   SNL +L     +G      ++  +S 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 200 TPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATL 259
           +   +L       + +        +    +   +LS    + +  +    +     L  L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 260 DVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLA 319
           D+S++    +   +    L  L HL+LSR          +       +  +P +  L + 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRC-------YDIIPETLLELGEIPTLKTLQVF 233

Query: 320 NNYIEGEIPAQLCQLKEVRLIDLSHNNLS 348
               +G +      L  +++       ++
Sbjct: 234 GIVPDGTLQLLKEALPHLQINCSHFTTIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 4/110 (3%)

Query: 405 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI 464
           +DL+   L  ++  ++     + A     + +   +   FS  + ++ +DLS +++    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 465 PQLIV--LTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512
              I+   + L    +    LS  I + +A+ S     +  G        
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 50/348 (14%), Positives = 96/348 (27%), Gaps = 36/348 (10%)

Query: 121 LPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSK 180
           L  CL        L+++   L+ S+      L   +E L+ S N            +L++
Sbjct: 32  LRDCLDR--QAHELELNNLGLS-SLPE----LPPHLESLVASCN------------SLTE 72

Query: 181 LKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLS 240
           L      +      + N          +   G  ++                     N  
Sbjct: 73  LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 132

Query: 241 GEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQ 300
            + P+    +  +             Q    +         +          +       
Sbjct: 133 KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 192

Query: 301 GSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTAL 360
                   +       + A+N +   +P     L+ + + D    +L             
Sbjct: 193 ILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSL------ 246

Query: 361 SEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQI 420
              + D     +   S    + +  N S         +  S+  +++S NKL  E+P   
Sbjct: 247 --TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP 303

Query: 421 GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLI 468
             L R   L  S N+L   +P    NLK    L + YN L  + P + 
Sbjct: 304 PRLER---LIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 13/86 (15%)

Query: 78  WQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVS 137
               SL+ELNV++NKL    P     L     L    N L+  +P    NL  L    V 
Sbjct: 281 DLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLKQL---HVE 332

Query: 138 YNQLTESISSSPLMLLTSIEELILSN 163
           YN L       P     S+E+L +++
Sbjct: 333 YNPLR-EFPDIP----ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 91  NKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPL 150
           N  +            L EL + NN L   LP     L   + L  S+N L   +     
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPE--- 321

Query: 151 MLLTSIEELILSNNHFQ-IPISLEPLSNL 178
            L  ++++L +  N  +  P   E + +L
Sbjct: 322 -LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 47  NTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVL 106
           +  +         L+EL + +N L   L        L+ L  + N L    P        
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALP--PRLERLIASFNHLA-EVPELPQN--- 325

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQV 133
           L++L+++ N L    P    ++  L++
Sbjct: 326 LKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 361 SEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQIL-----TSMSGIDLSCNKLTGE 415
           S+  Y      W+  + P        G+   +E  V  L          ++L+   L+  
Sbjct: 2   SKTEYYNAWSEWERNAPP--------GNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S 52

Query: 416 IPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQL 467
           +P    +L     L  S N+LT  +P    +LK +   + +   L    P L
Sbjct: 53  LPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLL 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 111 YIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-IP 169
               N  S  +        SL+ L+VS N+L E  +         +E LI S NH   +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL-----PPRLERLIASFNHLAEVP 320

Query: 170 ISLEPLSNLS 179
              + L  L 
Sbjct: 321 ELPQNLKQLH 330

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 4e-07
 Identities = 29/218 (13%), Positives = 68/218 (31%), Gaps = 8/218 (3%)

Query: 127 NLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNG 186
            L +   +    + +T++++ + L     I  L            ++ L+NL  L+  + 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADL---DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73

Query: 187 EIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNW 246
           +I  +     N         S +           + +               L+G     
Sbjct: 74  QIT-DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 247 LMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW 306
           ++ +   Q      ++      ++ +            NLS+        N++    P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 307 IDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSH 344
           +  LP +  + L NN I    P  L     + ++ L++
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 7e-05
 Identities = 32/204 (15%), Positives = 66/204 (32%), Gaps = 18/204 (8%)

Query: 253 LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQ 312
           L  + TL            +E   YL  L+ L L  N   D             +  L +
Sbjct: 40  LDGITTLSAFGTGVTT---IEGVQYLNNLIGLELKDNQITD----------LAPLKNLTK 86

Query: 313 ISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTW 372
           I+ L L+ N ++        Q  +   +  +       +        L       +    
Sbjct: 87  ITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ-ITNIS 145

Query: 373 DHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLS 432
             A    L Y S   + +     +  L+ ++ +    NK++   P  +  L  +  ++L 
Sbjct: 146 PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLK 203

Query: 433 HNNLTGTIPITFSNLKQIESLDLS 456
           +N ++   P   +N   +  + L+
Sbjct: 204 NNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 26/214 (12%), Positives = 66/214 (30%), Gaps = 14/214 (6%)

Query: 81  TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
            +  ++    + +T    +   +L  +  L      ++ ++   +  L +L  L++  NQ
Sbjct: 19  ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQ 74

Query: 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNL-------SKLKAFNGEIYLETE 193
           +T+      L  +T +E       +      L+ +  L       + +    G   L+  
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 194 SHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCL 253
               +        +   +         +          + L+ L       + + P+  L
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL 194

Query: 254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLS 287
             L  + + NN      P+        L  + L+
Sbjct: 195 PNLIEVHLKNNQISDVSPLA---NTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 78  WQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVS 137
              + L  L    NK++   PL    L  L E+++ NN +S   P  L N ++L ++ ++
Sbjct: 170 ANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

Query: 138 YNQ 140
            NQ
Sbjct: 226 -NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 24/213 (11%), Positives = 51/213 (23%), Gaps = 18/213 (8%)

Query: 253 LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQ 312
           L     +    +     +       L G+  L+        +            +  L  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTTIE----------GVQYLNN 64

Query: 313 ISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTW 372
           +  L L +N I    P +         +  +       I               +   T 
Sbjct: 65  LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIK---TLDLTSTQITD 121

Query: 373 DHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLS 432
               A   +                +    +   LS         T +  L+++  L   
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 433 HNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP 465
            N ++   P   ++L  +  + L  N +    P
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 7e-07
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 9/129 (6%)

Query: 35  RLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLT 94
           R+L L++  L   T+L     QL+ +  L +  N LR           L+ L    +   
Sbjct: 1   RVLHLAHKDL---TVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA--SDNA 54

Query: 95  RNFPLGLCELVLLRELYIDNNDL-SGSLPLCLTNLTSLQVLDVSYNQLT--ESISSSPLM 151
                G+  L  L+EL + NN L   +    L +   L +L++  N L   E I      
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 152 LLTSIEELI 160
           +L S+  ++
Sbjct: 115 MLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 84  QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE 143
           + L++A   LT      L +L+L+  L + +N L    P     L +L+ L+V       
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 144 SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFN 185
             +   +  L  ++EL+L NN  Q   +++PL +  +L   N
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 96

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 26/143 (18%)

Query: 315 YLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDH 374
            L LA+  +   +   L QL  V  +DLSHN L    P                      
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP--------------------AL 39

Query: 375 ASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG-EIPTQIGYLTRIRALNLSH 433
           A+   L     + + +   + V  L  +  + L  N+L        +    R+  LNL  
Sbjct: 40  AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 99

Query: 434 NNLT---GTIPITFSNLKQIESL 453
           N+L    G        L  + S+
Sbjct: 100 NSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 61  QELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGS 120
           + L++   DL   L    Q   +  L+++ N+L    P  L  L  L  L   +N L   
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 121 LPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166
             +        Q L +  N+L +S +  PL+    +  L L  N  
Sbjct: 59  DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 204 QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSN 263
            +T + LS  R     P     +       L  L  S      +  +  L +L  L + N
Sbjct: 21  LVTHLDLSHNRLRALPPALAALRC------LEVLQASDNALENVDGVANLPRLQELLLCN 74

Query: 264 NFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLL 317
           N  Q    ++     P L+ LNL  N+          G      + LP +S +L
Sbjct: 75  NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE-----GIQERLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 427 RALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNN 482
           R L+L+H +LT  +      L  +  LDLS+N L    P L  L  L V + + N 
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 54

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 16/117 (13%)

Query: 233 DLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN 292
            L+H +L+      L  +  L  +  LD+S+N  +   P      L  L  L + + + N
Sbjct: 4   HLAHKDLTV-----LCHLEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDN 53

Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG 349
            L        +    +       LL  N   +      L     + L++L  N+L  
Sbjct: 54  ALEN------VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 9e-07
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 2/110 (1%)

Query: 400 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP-ITFSNLKQIESLDLSYN 458
              SG+  + +    +    +     +  L + +      +       L ++ +L +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 459 LLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFL 508
            L    P     T          N    +  +  Q  + +E    GNP  
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 411 KLTGEIPTQIGY---LTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQL 467
           KLT E+  Q        R R L+L    +   I    + L Q +++D S N +  K+   
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGF 59

Query: 468 IVLTTLAVFRVAYNNLSGKIP 488
            +L  L    V  N +     
Sbjct: 60  PLLRRLKTLLVNNNRICRIGE 80

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 8e-05
 Identities = 33/208 (15%), Positives = 68/208 (32%), Gaps = 30/208 (14%)

Query: 270 IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPA 329
           +P  I            +    ++L    +  ++    + L  I  ++  N+ I+     
Sbjct: 10  VPTPIKQIFS---DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG- 63

Query: 330 QLCQLKEVRLIDLSHNNLSGHIPFC-LVNTALSEGYYDAVAPTWDHASAPALSYFSPNGS 388
            +  L  V  + L+ N L+   P   L N        + V           L   S   +
Sbjct: 64  -IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122

Query: 389 PMGKEETVQILTSMSGIDLSCNKLTGEIPTQ--------------------IGYLTRIRA 428
            +     +  L  +  + L  NK+T                          +  LT+++ 
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182

Query: 429 LNLSHNNLTGTIPITFSNLKQIESLDLS 456
           L LS N+++  +    + LK ++ L+L 
Sbjct: 183 LYLSKNHIS-DLR-ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 37/218 (16%), Positives = 83/218 (38%), Gaps = 30/218 (13%)

Query: 126 TNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFN 185
                    ++    +T++++ +    L SI+++I +N+  +    ++ L N++KL    
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL-- 75

Query: 186 GEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPN 245
                    + N LT    L ++   G+                    L  L+L     +
Sbjct: 76  ---------NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLK-DLKKLKSLSLEHNGIS 125

Query: 246 WLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPN 305
            +  +  L +L +L + NN                 +   L++     L  N++   +P 
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDIT-----------VLSRLTKLDTLSLEDNQISDIVP- 173

Query: 306 WIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLS 343
            +  L ++  L L+ N+I  ++ A L  LK + +++L 
Sbjct: 174 -LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELF 208

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 39/355 (10%), Positives = 95/355 (26%), Gaps = 47/355 (13%)

Query: 130 SLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY 189
           SL++  ++        +   L+   S++E++LS N     I  E    LS+         
Sbjct: 9   SLKLDAITTEDEKSVFAV--LLEDDSVKEIVLSGNT----IGTEAARWLSE--------- 53

Query: 190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMP 249
                   ++  K  L     S         +       L  A L    L     +    
Sbjct: 54  --------NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 105

Query: 250 IHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDR 309
               Q+     +S +    H+          L +  L   A   ++    + ++      
Sbjct: 106 GPTAQEPLIDFLSKHTPLEHLY---------LHNNGLGPQAGAKIARALQELAVNKKAKN 156

Query: 310 LPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVA 369
            P +  ++   N +E     +           L    +  +               + +A
Sbjct: 157 APPLRSIICGRNRLENGSM-KEWAKTFQSHRLLHTVKMVQNGIRPEGI---EHLLLEGLA 212

Query: 370 PTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIG------YL 423
              +            +         ++   ++  + L+   L+      +         
Sbjct: 213 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 272

Query: 424 TRIRALNLSHNNLTGTIPIT-----FSNLKQIESLDLSYNLLHGKIPQLIVLTTL 473
             ++ L L +N +      T        +  +  L+L+ N    +   +  +  +
Sbjct: 273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 37/309 (11%), Positives = 73/309 (23%), Gaps = 21/309 (6%)

Query: 59  HLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLT----RNFPLGLCELVLLRELYIDN 114
            L+   I   D +       +  S++E+ ++ N +     R     +     L      +
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 115 NDLS----------GSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNN 164
                           L   L     L  + +S N    +     +  L+    L     
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 165 HFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLY 224
           H               L+        +      S+                       L 
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 225 HQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHL 284
           H   +    +    +       L     L+ L   D +                P L  L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 285 NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ-----LKEVRL 339
            L+    +      +  +          +  L L  N IE +    L       + ++  
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLE--NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 340 IDLSHNNLS 348
           ++L+ N  S
Sbjct: 307 LELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 8e-04
 Identities = 33/331 (9%), Positives = 81/331 (24%), Gaps = 28/331 (8%)

Query: 33  SLRLLSLSYSRLNKNTI--LDQGFCQLVHLQELYIRDNDLRDSLLGAW-----QTTSLQE 85
           S+   SL    +       +     +   ++E+ +  N +                 L+ 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 86  LNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESI 145
              +     R        L LL +  +    L            + Q   + +      +
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 146 SSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQL 205
               L       +           +++   +  +             E+       K   
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 206 TSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQK---------- 255
           +   L   +      +    +H L         L           H              
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 256 -LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI-----DR 309
            L  L +++          +      L ++ L       L YN ++      +     ++
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT---LRLQYNEIELDAVRTLKTVIDEK 300

Query: 310 LPQISYLLLANNYI--EGEIPAQLCQLKEVR 338
           +P + +L L  N    E ++  ++ ++   R
Sbjct: 301 MPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 32/343 (9%), Positives = 83/343 (24%), Gaps = 49/343 (14%)

Query: 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESIS---SSPLMLLTSIEELILSN 163
           L+   I   D   S+   L    S++ + +S N +    +   S  +     +E    S+
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 164 NHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFL 223
                     P +    L+A      L T    ++         +     +       +L
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 224 YHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMH 283
           ++         + +  + +             L ++    N  +     E          
Sbjct: 129 HNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 284 LNLSRNAFNDLSYNRLQG----SIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRL 339
           L+  +   N +    ++      +    +            +     +   L     +R 
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 340 IDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQIL 399
           + L+   LS      +                                       +    
Sbjct: 248 LGLNDCLLSARGAAAV-----------------------------------VDAFSKLEN 272

Query: 400 TSMSGIDLSCNKLTGEIPTQI-----GYLTRIRALNLSHNNLT 437
             +  + L  N++  +    +       +  +  L L+ N  +
Sbjct: 273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 401 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL 460
           S        +K+T EIP+ +        L      L       FS    +E +++S N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 461 HGKIPQ 466
              I  
Sbjct: 66  LEVIEA 71

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 408 SCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQL 467
             N L           +    L++S   +         NLK++ +    YNL   K+P L
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST-YNL--KKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 34/240 (14%), Positives = 73/240 (30%), Gaps = 13/240 (5%)

Query: 82  SLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQL 141
           S +      +K+T   P  L       EL      L        +    L+ +++S N +
Sbjct: 9   SNRVFLCQESKVTE-IPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 142 TESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTP 201
            E I +     L  + E+ +   +  + I+ E   NL  L+                   
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 202 KFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDV 261
             Q   + +    +  T  +  +     ++  L       +  +             L++
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLD--ELNL 183

Query: 262 SNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANN 321
           S+N     +P ++     G + L        D+S  R+       ++ L ++      N 
Sbjct: 184 SDNNNLEELPNDVFHGASGPVIL--------DISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 16/180 (8%)

Query: 126 TNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKA-- 183
           T L       +    +T+++S + L     +  L       +    +E L+NL+++    
Sbjct: 15  TALAEKMKTVLGKTNVTDTVSQTDL---DQVTTLQADRLGIKSIDGVEYLNNLTQINFSN 71

Query: 184 --------FNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLS 235
                         L      N+        +   +         +           +L+
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 236 HLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS 295
            L LS    + +  +  L  L  L+ S+N      P+     L  L  L++S N  +D+S
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLA---NLTTLERLDISSNKVSDIS 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	603
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.89
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.76
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.32
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.1

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2.2e-27  Score=240.33  Aligned_cols=342  Identities=22%  Similarity=0.284  Sum_probs=207.0

Q ss_pred             CCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCE
Q 036984           55 CQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQV  133 (603)
Q Consensus        55 ~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  133 (603)
                      ..+.+|++|++++++|+++.  .+. +++|++|++++|++++. + .++++++|++|++++|++.+..  .++++++|+.
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~--gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HHhCCCCEEECCCCCCCCcc--ccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccccc--cccccccccc
Confidence            34566777777777777652  233 77788888888777764 3 2777778888888888777543  3677778888


Q ss_pred             EEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCC
Q 036984          134 LDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGY  213 (603)
Q Consensus       134 L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  213 (603)
                      |+++++.+++ ++.  ......+.......|.+........   ..........   ........+.............+
T Consensus       115 L~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  185 (384)
T d2omza2         115 LTLFNNQITD-IDP--LKNLTNLNRLELSSNTISDISALSG---LTSLQQLSFG---NQVTDLKPLANLTTLERLDISSN  185 (384)
T ss_dssp             EECCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCCGGGTT---CTTCSEEEEE---ESCCCCGGGTTCTTCCEEECCSS
T ss_pred             cccccccccc-ccc--ccccccccccccccccccccccccc---cccccccccc---cccchhhhhcccccccccccccc
Confidence            8887777763 222  3344566666666655432211110   0000000000   00000011111112222333333


Q ss_pred             CCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCccc
Q 036984          214 RDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFND  293 (603)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  293 (603)
                      ..  ........+++++.+++++|.+.+..|     ...+++|+.|++++|.++ .++ . +..+++|+.|++++|.+.+
T Consensus       186 ~~--~~~~~~~~l~~~~~l~l~~n~i~~~~~-----~~~~~~L~~L~l~~n~l~-~~~-~-l~~l~~L~~L~l~~n~l~~  255 (384)
T d2omza2         186 KV--SDISVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLK-DIG-T-LASLTNLTDLDLANNQISN  255 (384)
T ss_dssp             CC--CCCGGGGGCTTCSEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCCCC
T ss_pred             cc--ccccccccccccceeeccCCccCCCCc-----ccccCCCCEEECCCCCCC-Ccc-h-hhcccccchhccccCccCC
Confidence            22  224455667777777777777665433     345667777777777776 443 2 2336777777777776654


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCc
Q 036984          294 LSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWD  373 (603)
Q Consensus       294 l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (603)
                      +.          .++.+++|++|++++|.+++..  .+..++.++.+++++|.+.+.                       
T Consensus       256 ~~----------~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~-----------------------  300 (384)
T d2omza2         256 LA----------PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI-----------------------  300 (384)
T ss_dssp             CG----------GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC-----------------------
T ss_pred             CC----------cccccccCCEeeccCcccCCCC--ccccccccccccccccccccc-----------------------
Confidence            32          2455677777777777776443  356677777777777776521                       


Q ss_pred             CCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEE
Q 036984          374 HASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESL  453 (603)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  453 (603)
                                          ..+..+++++.|++++|++++..  .+..+++|++|++++|++++ ++ .+.++++|++|
T Consensus       301 --------------------~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L  356 (384)
T d2omza2         301 --------------------SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWL  356 (384)
T ss_dssp             --------------------GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEE
T ss_pred             --------------------cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEE
Confidence                                12344677788888888887543  36777888888888888874 33 57778888888


Q ss_pred             eCCCCcCcccCCCccCCCCCCceecccC
Q 036984          454 DLSYNLLHGKIPQLIVLTTLAVFRVAYN  481 (603)
Q Consensus       454 ~Ls~N~l~~~~~~~~~l~~L~~L~l~~N  481 (603)
                      ++++|++++.+ .+..+++|+.|++++|
T Consensus       357 ~l~~N~l~~l~-~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         357 SAGHNQISDLT-PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCCBCG-GGTTCTTCSEEECCCE
T ss_pred             ECCCCcCCCCh-hhccCCCCCEeeCCCC
Confidence            88888887544 3677788888888877

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1e-28  Score=242.57  Aligned_cols=257  Identities=29%  Similarity=0.467  Sum_probs=223.4

Q ss_pred             cccEEeccCCCCCC--CcChhhccCCCCCEEEcCC-CcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCC
Q 036984          204 QLTSISLSGYRDDG--TFPKFLYHQHDLKNADLSH-LNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPG  280 (603)
Q Consensus       204 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~  280 (603)
                      +++.|+++++.+.+  .+|..+..+++|++|++++ |.+.|.+|..   +.++++|++|++++|++.+..+. .+..+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~---i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA---IAKLTQLHYLYITHTNVSGAIPD-FLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG---GGGCTTCSEEEEEEECCEEECCG-GGGGCTT
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc---cccccccchhhhccccccccccc-cccchhh
Confidence            68999999999887  4789999999999999997 7899899987   78899999999999999855554 4455889


Q ss_pred             CcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCC-CEEecCCCcCccCCChhhhccc
Q 036984          281 LMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEV-RLIDLSHNNLSGHIPFCLVNTA  359 (603)
Q Consensus       281 L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~~~  359 (603)
                      |+.+++++|.+.        +.+|..++.+++++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..  
T Consensus       127 L~~l~l~~N~~~--------~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~--  196 (313)
T d1ogqa_         127 LVTLDFSYNALS--------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--  196 (313)
T ss_dssp             CCEEECCSSEEE--------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--
T ss_pred             hccccccccccc--------ccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccc--
Confidence            999888877653        4678889999999999999999999999999888776 89999999998776654433  


Q ss_pred             ccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccccccccc
Q 036984          360 LSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT  439 (603)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  439 (603)
                                                             + ....++++++...+.+|..+..+++++.+++++|.+++.
T Consensus       197 ---------------------------------------l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         197 ---------------------------------------L-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             ---------------------------------------C-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             ---------------------------------------c-ccccccccccccccccccccccccccccccccccccccc
Confidence                                                   2 345699999999999999999999999999999999966


Q ss_pred             CCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCCCCCC
Q 036984          440 IPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSC  517 (603)
Q Consensus       440 ~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~~~~C  517 (603)
                      +| .+..+++|+.||+++|++++.+| .+..+++|++|+|++|+++|.+|+ ++.++.++.+++.||+.+|+.|+. .|
T Consensus       237 ~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCC-CC
Confidence            54 68889999999999999999999 899999999999999999999997 578999999999999999998764 55

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=6.1e-27  Score=237.02  Aligned_cols=341  Identities=24%  Similarity=0.253  Sum_probs=249.5

Q ss_pred             CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEE
Q 036984           80 TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEEL  159 (603)
Q Consensus        80 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L  159 (603)
                      +.+|++|+++++.++..  +.+..+++|++|++++|++++..  .++++++|++|++++|.+.+ ++.  +..+++|+.|
T Consensus        43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~-i~~--l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccc-ccc--cccccccccc
Confidence            78999999999999874  46889999999999999999653  39999999999999999984 443  8899999999


Q ss_pred             EccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcc
Q 036984          160 ILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNL  239 (603)
Q Consensus       160 ~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i  239 (603)
                      +++++.++.........   .+..............................     ......+.............+..
T Consensus       116 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  187 (384)
T d2omza2         116 TLFNNQITDIDPLKNLT---NLNRLELSSNTISDISALSGLTSLQQLSFGNQ-----VTDLKPLANLTTLERLDISSNKV  187 (384)
T ss_dssp             ECCSSCCCCCGGGTTCT---TCSEEEEEEEEECCCGGGTTCTTCSEEEEEES-----CCCCGGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccc---cccccccccccccccccccccccccccccccc-----cchhhhhcccccccccccccccc
Confidence            99999876443332222   22222222111100000000000111111111     11223344445555555555543


Q ss_pred             cCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEecc
Q 036984          240 SGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLA  319 (603)
Q Consensus       240 ~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~  319 (603)
                      ..  .   .....+++++.+++++|.+++ ++.  ...+++|++|++++|.+.+++          .+..+++|+.++++
T Consensus       188 ~~--~---~~~~~l~~~~~l~l~~n~i~~-~~~--~~~~~~L~~L~l~~n~l~~~~----------~l~~l~~L~~L~l~  249 (384)
T d2omza2         188 SD--I---SVLAKLTNLESLIATNNQISD-ITP--LGILTNLDELSLNGNQLKDIG----------TLASLTNLTDLDLA  249 (384)
T ss_dssp             CC--C---GGGGGCTTCSEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCCG----------GGGGCTTCSEEECC
T ss_pred             cc--c---cccccccccceeeccCCccCC-CCc--ccccCCCCEEECCCCCCCCcc----------hhhcccccchhccc
Confidence            32  1   125678899999999999984 433  233789999999999876542          45668999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhc
Q 036984          320 NNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQIL  399 (603)
Q Consensus       320 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  399 (603)
                      +|.+++..+  +..+++|+.|++++|++++..                                           .+..+
T Consensus       250 ~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~-------------------------------------------~~~~~  284 (384)
T d2omza2         250 NNQISNLAP--LSGLTKLTELKLGANQISNIS-------------------------------------------PLAGL  284 (384)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-------------------------------------------GGTTC
T ss_pred             cCccCCCCc--ccccccCCEeeccCcccCCCC-------------------------------------------ccccc
Confidence            999986543  788999999999999987321                                           23446


Q ss_pred             ccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecc
Q 036984          400 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVA  479 (603)
Q Consensus       400 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  479 (603)
                      +.++.+++++|.+++.  ..+..++++++|++++|++++..  .+..+++|++|++++|+++ .++.+..+++|++|+++
T Consensus       285 ~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~~l~~l~~L~~L~l~  359 (384)
T d2omza2         285 TALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVSSLANLTNINWLSAG  359 (384)
T ss_dssp             TTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCGGGGGCTTCCEEECC
T ss_pred             cccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CChhHcCCCCCCEEECC
Confidence            7889999999999853  35888999999999999999654  3788999999999999998 46678899999999999


Q ss_pred             cCcccccCCCcccccCCCCcccccCC
Q 036984          480 YNNLSGKIPDRVAQFSTFEEDSYEGN  505 (603)
Q Consensus       480 ~N~l~~~~p~~~~~l~~l~~~~l~gn  505 (603)
                      +|++++..|  +..++.++.+++++|
T Consensus       360 ~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         360 HNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCcCCCChh--hccCCCCCEeeCCCC
Confidence            999997665  788999999999887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=8.7e-27  Score=228.60  Aligned_cols=251  Identities=28%  Similarity=0.456  Sum_probs=146.0

Q ss_pred             CCCCEEEccCCCCCc--CCchhhcCCCCCcEEeccC-CCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCc
Q 036984           81 TSLQELNVASNKLTR--NFPLGLCELVLLRELYIDN-NDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIE  157 (603)
Q Consensus        81 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~  157 (603)
                      .+++.|+|+++.+.+  .+|..++++++|++|+|++ |++++.+|..|+++++|++|+|++|.+.+..+. .+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccc-cccchhhhc
Confidence            357778888877765  3567788888888888876 677777777788888888888888877754443 566666666


Q ss_pred             EEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCC
Q 036984          158 ELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHL  237 (603)
Q Consensus       158 ~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n  237 (603)
                      +++++.|.+.                                                                      
T Consensus       129 ~l~l~~N~~~----------------------------------------------------------------------  138 (313)
T d1ogqa_         129 TLDFSYNALS----------------------------------------------------------------------  138 (313)
T ss_dssp             EEECCSSEEE----------------------------------------------------------------------
T ss_pred             cccccccccc----------------------------------------------------------------------
Confidence            6666666543                                                                      


Q ss_pred             cccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEe
Q 036984          238 NLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLL  317 (603)
Q Consensus       238 ~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~  317 (603)
                         +.+|.+   +..++.++.+++++|.+.+.+|..+......++.+++++|++.        +..|..+..+. ...++
T Consensus       139 ---~~~p~~---l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~--------~~~~~~~~~l~-~~~l~  203 (313)
T d1ogqa_         139 ---GTLPPS---ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT--------GKIPPTFANLN-LAFVD  203 (313)
T ss_dssp             ---SCCCGG---GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE--------EECCGGGGGCC-CSEEE
T ss_pred             ---ccCchh---hccCcccceeecccccccccccccccccccccccccccccccc--------ccccccccccc-ccccc
Confidence               222222   3344555555555555555555444431111233333333221        12222222222 23455


Q ss_pred             ccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhh
Q 036984          318 LANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQ  397 (603)
Q Consensus       318 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (603)
                      +.++...+.+|..+..+++++.+++++|.+.+                                                
T Consensus       204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~------------------------------------------------  235 (313)
T d1ogqa_         204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF------------------------------------------------  235 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECC------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccc------------------------------------------------
Confidence            55555555555555555666666666555543                                                


Q ss_pred             hcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCcee
Q 036984          398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFR  477 (603)
Q Consensus       398 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~  477 (603)
                                       .++ .+..+++|+.|+|++|++++.+|..|+++++|++|||++|+++|.+|.+..+++|+.++
T Consensus       236 -----------------~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~  297 (313)
T d1ogqa_         236 -----------------DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA  297 (313)
T ss_dssp             -----------------BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred             -----------------ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHH
Confidence                             222 34445556666666666666666666666666666666666666666555666666666


Q ss_pred             cccCcc
Q 036984          478 VAYNNL  483 (603)
Q Consensus       478 l~~N~l  483 (603)
                      +++|+.
T Consensus       298 l~~N~~  303 (313)
T d1ogqa_         298 YANNKC  303 (313)
T ss_dssp             TCSSSE
T ss_pred             hCCCcc
Confidence            666653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=7.1e-24  Score=206.86  Aligned_cols=269  Identities=20%  Similarity=0.200  Sum_probs=154.4

Q ss_pred             CCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEccc
Q 036984           59 HLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY  138 (603)
Q Consensus        59 ~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  138 (603)
                      ..++++-++.+++.+|...  .+++++|++++|+++.+.+.+|.++++|++|++++|.+....|.+|.++++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            4566777777777776654  35677778888777775556777777788888888777766677777777888888877


Q ss_pred             CcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCC
Q 036984          139 NQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGT  218 (603)
Q Consensus       139 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  218 (603)
                      |+++ .+|..   ....++.|++..|.+...                                                 
T Consensus        89 n~l~-~l~~~---~~~~l~~L~~~~n~l~~l-------------------------------------------------  115 (305)
T d1xkua_          89 NQLK-ELPEK---MPKTLQELRVHENEITKV-------------------------------------------------  115 (305)
T ss_dssp             SCCS-BCCSS---CCTTCCEEECCSSCCCBB-------------------------------------------------
T ss_pred             CccC-cCccc---hhhhhhhhhccccchhhh-------------------------------------------------
Confidence            7776 45541   234566666666554311                                                 


Q ss_pred             cChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCc
Q 036984          219 FPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNR  298 (603)
Q Consensus       219 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~  298 (603)
                      .+..+.....+..++...+....                         . ......+..+++|+.+++++|.+..+.   
T Consensus       116 ~~~~~~~~~~~~~l~~~~n~~~~-------------------------~-~~~~~~~~~l~~L~~l~l~~n~l~~l~---  166 (305)
T d1xkua_         116 RKSVFNGLNQMIVVELGTNPLKS-------------------------S-GIENGAFQGMKKLSYIRIADTNITTIP---  166 (305)
T ss_dssp             CHHHHTTCTTCCEEECCSSCCCG-------------------------G-GBCTTGGGGCTTCCEEECCSSCCCSCC---
T ss_pred             hhhhhhccccccccccccccccc-------------------------c-CCCccccccccccCccccccCCccccC---
Confidence            11111222222333333322110                         0 011112222444555555444433221   


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCC
Q 036984          299 LQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAP  378 (603)
Q Consensus       299 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (603)
                            ..  .+++|+.|++++|......+..+..++.++.|++++|++.+..+                          
T Consensus       167 ------~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~--------------------------  212 (305)
T d1xkua_         167 ------QG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--------------------------  212 (305)
T ss_dssp             ------SS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT--------------------------
T ss_pred             ------cc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccc--------------------------
Confidence                  11  13566667777776666666677777777777777777753222                          


Q ss_pred             CeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCC------cCCCCCCE
Q 036984          379 ALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITF------SNLKQIES  452 (603)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~  452 (603)
                                     ..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|+|+......|      ..+.+|+.
T Consensus       213 ---------------~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~  276 (305)
T d1xkua_         213 ---------------GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG  276 (305)
T ss_dssp             ---------------TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSE
T ss_pred             ---------------ccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCE
Confidence                           12233556666666666666 445566777777777777777764433333      23455666


Q ss_pred             EeCCCCcCc
Q 036984          453 LDLSYNLLH  461 (603)
Q Consensus       453 L~Ls~N~l~  461 (603)
                      |++++|++.
T Consensus       277 L~L~~N~~~  285 (305)
T d1xkua_         277 VSLFSNPVQ  285 (305)
T ss_dssp             EECCSSSSC
T ss_pred             EECCCCcCc
Confidence            666666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=5.3e-23  Score=200.57  Aligned_cols=252  Identities=21%  Similarity=0.209  Sum_probs=114.7

Q ss_pred             CCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEc
Q 036984           58 VHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDV  136 (603)
Q Consensus        58 ~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  136 (603)
                      +++++|+|++|+|+.+++..|. +++|++|++++|.+....|..|.++++|++|++++|+++. +|..+  ...++.|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccch--hhhhhhhhc
Confidence            3455555555555555555444 5555555555555555445555555555555555555552 22221  234555555


Q ss_pred             ccCcCCccCCcccccCCCCCcEEEccCceeeee-cCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCC
Q 036984          137 SYNQLTESISSSPLMLLTSIEELILSNNHFQIP-ISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRD  215 (603)
Q Consensus       137 ~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  215 (603)
                      .+|.+.+ ++...+.....+..++...|..... .....+..+++|+.+...........   .....+++.|++++|..
T Consensus       108 ~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~---~~~~~~L~~L~l~~n~~  183 (305)
T d1xkua_         108 HENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP---QGLPPSLTELHLDGNKI  183 (305)
T ss_dssp             CSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC---SSCCTTCSEEECTTSCC
T ss_pred             cccchhh-hhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC---cccCCccCEEECCCCcC
Confidence            5555542 3333444444555555544433211 11111222222222221110000000   00112455555555555


Q ss_pred             CCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCccccc
Q 036984          216 DGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS  295 (603)
Q Consensus       216 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~  295 (603)
                      ....+..+..++.++.|++++|.+.+..+.+   +..+++|++|+|++|.++ .+|..+.. +++|++|++++|++.+++
T Consensus       184 ~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~---~~~l~~L~~L~L~~N~L~-~lp~~l~~-l~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGS---LANTPHLRELHLNNNKLV-KVPGGLAD-HKYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTT---GGGSTTCCEEECCSSCCS-SCCTTTTT-CSSCCEEECCSSCCCCCC
T ss_pred             CCCChhHhhcccccccccccccccccccccc---ccccccceeeeccccccc-cccccccc-ccCCCEEECCCCccCccC
Confidence            5555555555555555555555555444443   444555555555555554 45443333 555555555555555554


Q ss_pred             CCcCcccCCccccCCCCCCEEeccCCcC
Q 036984          296 YNRLQGSIPNWIDRLPQISYLLLANNYI  323 (603)
Q Consensus       296 ~~~~~~~~~~~l~~l~~L~~L~L~~n~l  323 (603)
                      ...|.+  +.....+++|+.|++++|.+
T Consensus       259 ~~~f~~--~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         259 SNDFCP--PGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             TTSSSC--SSCCTTSCCCSEEECCSSSS
T ss_pred             hhhccC--cchhcccCCCCEEECCCCcC
Confidence            433332  22223344455555555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-23  Score=198.88  Aligned_cols=111  Identities=25%  Similarity=0.265  Sum_probs=64.4

Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCcee
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFR  477 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~  477 (603)
                      +++|+.|++++|.+.+..+..+..+.++++|++++|.++...+..+..+++|+.|++++|++++..+ .+..+++|++|+
T Consensus        99 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~  178 (266)
T d1p9ag_          99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (266)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceee
Confidence            4455555555555554445555555566666666666655555555555666666666666654444 455566666666


Q ss_pred             cccCcccccCCCcccccCCCCcccccCCcCCCC
Q 036984          478 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYG  510 (603)
Q Consensus       478 l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~  510 (603)
                      |++|+++ .+|..+..++.++.++++||||.|+
T Consensus       179 Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            6666665 4555555566666666666666663

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.2e-23  Score=199.78  Aligned_cols=207  Identities=19%  Similarity=0.178  Sum_probs=142.7

Q ss_pred             CCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEecc-CCcCcccCCcccc
Q 036984          254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLA-NNYIEGEIPAQLC  332 (603)
Q Consensus       254 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~-~n~l~~~~~~~~~  332 (603)
                      +++++|+|++|.++ .+|...+..+++|++|++++|.+..+.        +..+..+..++.+... .+.++...+..|.
T Consensus        32 ~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~--------~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~  102 (284)
T d1ozna_          32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARID--------AAAFTGLALLEQLDLSDNAQLRSVDPATFH  102 (284)
T ss_dssp             TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEEC--------TTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred             CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccc--------cccccccccccccccccccccccccchhhc
Confidence            45677777777776 566665666777777777766665443        2333345666666554 4556666666777


Q ss_pred             CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCC
Q 036984          333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL  412 (603)
Q Consensus       333 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  412 (603)
                      ++++|++|++++|.+....                                         ...+..+.+|+.+++++|++
T Consensus       103 ~l~~L~~L~l~~n~~~~~~-----------------------------------------~~~~~~~~~L~~l~l~~N~l  141 (284)
T d1ozna_         103 GLGRLHTLHLDRCGLQELG-----------------------------------------PGLFRGLAALQYLYLQDNAL  141 (284)
T ss_dssp             TCTTCCEEECTTSCCCCCC-----------------------------------------TTTTTTCTTCCEEECCSSCC
T ss_pred             ccccCCEEecCCccccccc-----------------------------------------ccccchhcccchhhhccccc
Confidence            7777777777777765221                                         12233456777777777777


Q ss_pred             cccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcc
Q 036984          413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRV  491 (603)
Q Consensus       413 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~  491 (603)
                      ++..+..|..+++|++|++++|++++..+..|.++++|+.+++++|++++..| .+..+++|++|++++|.+.+..|..+
T Consensus       142 ~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~  221 (284)
T d1ozna_         142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL  221 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred             cccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccc
Confidence            76666667777777777777777777777777777777777777777776666 67777777777777777777666677


Q ss_pred             cccCCCCcccccCCcCCCC
Q 036984          492 AQFSTFEEDSYEGNPFLYG  510 (603)
Q Consensus       492 ~~l~~l~~~~l~gn~~~c~  510 (603)
                      +.++.++.++++||||.|.
T Consensus       222 ~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         222 APLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TTCTTCCEEECCSSCEECS
T ss_pred             ccccccCEEEecCCCCCCC
Confidence            7777777778888888774

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.5e-23  Score=197.61  Aligned_cols=224  Identities=20%  Similarity=0.176  Sum_probs=144.5

Q ss_pred             EEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEccc-Cc
Q 036984           62 ELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY-NQ  140 (603)
Q Consensus        62 ~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~  140 (603)
                      +++.++++++.+|...  .+++++|+|++|+++++.+.+|.++++|++|++++|.+....+..+.+++.++.+.... +.
T Consensus        15 ~v~c~~~~L~~iP~~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCccCCCC--CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            3455555566555433  34566677777776665555666677777777777776666666666666666665543 33


Q ss_pred             CCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcC
Q 036984          141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFP  220 (603)
Q Consensus       141 i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  220 (603)
                      ++ .++...|..+++|++|++++|.+..                                                 ..+
T Consensus        93 ~~-~l~~~~~~~l~~L~~L~l~~n~~~~-------------------------------------------------~~~  122 (284)
T d1ozna_          93 LR-SVDPATFHGLGRLHTLHLDRCGLQE-------------------------------------------------LGP  122 (284)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECTTSCCCC-------------------------------------------------CCT
T ss_pred             cc-cccchhhcccccCCEEecCCccccc-------------------------------------------------ccc
Confidence            43 3444456666666666666664431                                                 112


Q ss_pred             hhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCc
Q 036984          221 KFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQ  300 (603)
Q Consensus       221 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~  300 (603)
                      ..+....+|+.+++++|.+++..+..   +..+++|+.|++++|.+. .++...+..+++|+.+++++|++..+      
T Consensus       123 ~~~~~~~~L~~l~l~~N~l~~i~~~~---f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~l~l~~N~l~~i------  192 (284)
T d1ozna_         123 GLFRGLAALQYLYLQDNALQALPDDT---FRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHV------  192 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEE------
T ss_pred             cccchhcccchhhhccccccccChhH---hccccchhhcccccCccc-ccchhhhccccccchhhhhhcccccc------
Confidence            22334445666666666665444444   455677788888888876 56666666677888877777766543      


Q ss_pred             ccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984          301 GSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG  349 (603)
Q Consensus       301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  349 (603)
                        .|..|..+++|++|++++|.+.+..+..|..+++|++|++++|++.+
T Consensus       193 --~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         193 --HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             --CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             --ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence              35566667888888888888887777788888888888888888864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.6e-21  Score=185.63  Aligned_cols=202  Identities=22%  Similarity=0.236  Sum_probs=168.4

Q ss_pred             cCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCC
Q 036984          225 HQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIP  304 (603)
Q Consensus       225 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~  304 (603)
                      ....+.+++.++++++ .+|..+     .+++++|+|++|.++ .+|...+..+++|++|+|++|.+..+.         
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~l-----p~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~---------   71 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDL-----PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQ---------   71 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCC-----CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEE---------
T ss_pred             ccCCCeEEEccCCCCC-eeCcCc-----CcCCCEEECcCCcCC-CcCHHHhhccccccccccccccccccc---------
Confidence            4456677888888887 466542     257999999999998 678777777999999999999887553         


Q ss_pred             ccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEe
Q 036984          305 NWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFS  384 (603)
Q Consensus       305 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (603)
                       .++.+++|++|++++|+++. .+..+..+++|+.|++++|.+....                                 
T Consensus        72 -~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~---------------------------------  116 (266)
T d1p9ag_          72 -VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLP---------------------------------  116 (266)
T ss_dssp             -CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCC---------------------------------
T ss_pred             -cccccccccccccccccccc-cccccccccccccccccccccceee---------------------------------
Confidence             23458899999999999984 5667889999999999999986322                                 


Q ss_pred             cCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccC
Q 036984          385 PNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI  464 (603)
Q Consensus       385 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  464 (603)
                              ...+..+.+++.|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|++|||++|+|+ .+
T Consensus       117 --------~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         117 --------LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             --------SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             --------ccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence                    233445778999999999999787888889999999999999999888888999999999999999999 56


Q ss_pred             C-CccCCCCCCceecccCccccc
Q 036984          465 P-QLIVLTTLAVFRVAYNNLSGK  486 (603)
Q Consensus       465 ~-~~~~l~~L~~L~l~~N~l~~~  486 (603)
                      | .+..+++|+.|+|++|++.+.
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ChhHCCCCCCCEEEecCCCCCCC
Confidence            6 788899999999999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=3.6e-18  Score=169.49  Aligned_cols=96  Identities=32%  Similarity=0.314  Sum_probs=60.8

Q ss_pred             CCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEe
Q 036984           32 ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELY  111 (603)
Q Consensus        32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (603)
                      .++++|||+++.++.   +|+   ..++|++|++++|+++.++..   ..+|+.|++++|+++.. +. +  .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~~---lp~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLSS---LPE---LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCSC---CCS---CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEE
T ss_pred             cCCCEEEeCCCCCCC---CCC---CCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchh-hh-h--cccccccc
Confidence            467788888877764   222   246777778877777766532   45677777777776652 22 1  13477777


Q ss_pred             ccCCCCccCcCccCCCCCCCCEEEcccCcCC
Q 036984          112 IDNNDLSGSLPLCLTNLTSLQVLDVSYNQLT  142 (603)
Q Consensus       112 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~  142 (603)
                      +++|.+.. +|. ++++++|++|+++++.+.
T Consensus       105 L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         105 VSNNQLEK-LPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCSSCCSS-CCC-CTTCTTCCEEECCSSCCS
T ss_pred             cccccccc-ccc-hhhhccceeecccccccc
Confidence            77777663 332 456677777777766665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=1.2e-17  Score=165.61  Aligned_cols=220  Identities=24%  Similarity=0.252  Sum_probs=134.0

Q ss_pred             CCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcc
Q 036984           58 VHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVS  137 (603)
Q Consensus        58 ~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  137 (603)
                      .++++|+|++++++.+|..   .++|++|++++|+++. +|..   ..+|+.|++++|+++. ++. +  .+.|++|+++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccch-hhh-h--cccccccccc
Confidence            4688999999999887642   6789999999999986 5654   4579999999998873 332 1  1469999999


Q ss_pred             cCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCC
Q 036984          138 YNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDG  217 (603)
Q Consensus       138 ~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  217 (603)
                      +|.+. .+|.  +..+++|++|+++++.+.....  ...                           .+..+.+..+... 
T Consensus       107 ~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~~~--~~~---------------------------~l~~l~~~~~~~~-  153 (353)
T d1jl5a_         107 NNQLE-KLPE--LQNSSFLKIIDVDNNSLKKLPD--LPP---------------------------SLEFIAAGNNQLE-  153 (353)
T ss_dssp             SSCCS-SCCC--CTTCTTCCEEECCSSCCSCCCC--CCT---------------------------TCCEEECCSSCCS-
T ss_pred             ccccc-cccc--hhhhccceeecccccccccccc--ccc---------------------------cccchhhcccccc-
Confidence            99987 5665  5788999999999887652221  111                           3333333333322 


Q ss_pred             CcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCC
Q 036984          218 TFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYN  297 (603)
Q Consensus       218 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  297 (603)
                       ....+..++.++.+.+++|..... +..      ....+.+..+++.+. .++..  ..++.|+.+++++|....+   
T Consensus       154 -~~~~l~~l~~l~~L~l~~n~~~~~-~~~------~~~~~~l~~~~~~~~-~~~~~--~~l~~L~~l~l~~n~~~~~---  219 (353)
T d1jl5a_         154 -ELPELQNLPFLTAIYADNNSLKKL-PDL------PLSLESIVAGNNILE-ELPEL--QNLPFLTTIYADNNLLKTL---  219 (353)
T ss_dssp             -SCCCCTTCTTCCEEECCSSCCSSC-CCC------CTTCCEEECCSSCCS-SCCCC--TTCTTCCEEECCSSCCSSC---
T ss_pred             -ccccccccccceeccccccccccc-ccc------ccccccccccccccc-ccccc--ccccccccccccccccccc---
Confidence             123345566677777777665422 211      123445555555544 44432  2366777777776654322   


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCc
Q 036984          298 RLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS  348 (603)
Q Consensus       298 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  348 (603)
                            +.   ...++..+.+.++.+... +   .....+...++..+.+.
T Consensus       220 ------~~---~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         220 ------PD---LPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFS  257 (353)
T ss_dssp             ------CS---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS
T ss_pred             ------cc---cccccccccccccccccc-c---ccccccccccccccccc
Confidence                  11   134566677777666532 1   12345566666665553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.2e-21  Score=202.47  Aligned_cols=111  Identities=20%  Similarity=0.250  Sum_probs=61.6

Q ss_pred             CCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCC--CCccccCCCCCCCEEEccCCcCCCCccCc----cc
Q 036984            6 NLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNT--ILDQGFCQLVHLQELYIRDNDLRDSLLGA----WQ   79 (603)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~   79 (603)
                      +|++|+|+++.+.. ..+...... ++++++|+|++|.++...  .+...+..+++|++|+|++|.+++.....    +.
T Consensus         3 ~l~~ld~~~~~i~~-~~~~~l~~~-l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSD-ARWAELLPL-LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCH-HHHHHHHHH-HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCCh-HHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            56777777766642 344443333 677777777777665321  11234556677777777777665322111    11


Q ss_pred             --CCCCCEEEccCCCCCcC----CchhhcCCCCCcEEeccCCCCc
Q 036984           80 --TTSLQELNVASNKLTRN----FPLGLCELVLLRELYIDNNDLS  118 (603)
Q Consensus        80 --~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~  118 (603)
                        ..+|++|++++|++++.    ++..+..+++|++|++++|.++
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence              23566666666666542    2234455666666666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.4e-17  Score=154.09  Aligned_cols=203  Identities=16%  Similarity=0.235  Sum_probs=132.2

Q ss_pred             EeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecC
Q 036984          208 ISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLS  287 (603)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~  287 (603)
                      ++++.+.+++.  .....+.+|+.|++.+|.+.. ++.    +..+++|++|++++|.+.+ ++.  +..+++++.++++
T Consensus        24 ~~l~~~~~~d~--~~~~~l~~L~~L~l~~~~i~~-l~~----l~~l~~L~~L~ls~n~i~~-~~~--l~~l~~l~~l~~~   93 (227)
T d1h6ua2          24 IAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT-IEG----VQYLNNLIGLELKDNQITD-LAP--LKNLTKITELELS   93 (227)
T ss_dssp             HHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCC-CTT----GGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEEECC
T ss_pred             HHhCCCCcCCc--CCHHHcCCcCEEECCCCCCCc-chh----HhcCCCCcEeecCCceeec-ccc--ccccccccccccc
Confidence            44444444432  244566777777887777763 232    5677778888887777763 332  3346777777777


Q ss_pred             CCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCC
Q 036984          288 RNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDA  367 (603)
Q Consensus       288 ~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  367 (603)
                      +|.+.+++          .+..+++|+.++++++...+.  ..+...+.++.+.++++.+...                 
T Consensus        94 ~n~~~~i~----------~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-----------------  144 (227)
T d1h6ua2          94 GNPLKNVS----------AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI-----------------  144 (227)
T ss_dssp             SCCCSCCG----------GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC-----------------
T ss_pred             cccccccc----------ccccccccccccccccccccc--chhccccchhhhhchhhhhchh-----------------
Confidence            77665432          244567777777777766543  2355566777777777666421                 


Q ss_pred             CCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCC
Q 036984          368 VAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNL  447 (603)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  447 (603)
                                                ..+..+++|+.|++++|.+.+..  .++++++|++|++++|++++. + .++++
T Consensus       145 --------------------------~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l  194 (227)
T d1h6ua2         145 --------------------------SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASL  194 (227)
T ss_dssp             --------------------------GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGC
T ss_pred             --------------------------hhhccccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCC
Confidence                                      12344667888888888776432  367778888888888888743 2 36777


Q ss_pred             CCCCEEeCCCCcCcccCCCccCCCCCCceeccc
Q 036984          448 KQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAY  480 (603)
Q Consensus       448 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~  480 (603)
                      ++|++|++++|+++ .++.+..+++|+.|++++
T Consensus       195 ~~L~~L~Ls~N~lt-~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         195 PNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEECTTSCCC-BCGGGTTCTTCCEEEEEE
T ss_pred             CCCCEEECcCCcCC-CCcccccCCCCCEEEeeC
Confidence            88888888888877 345577778888887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=2.4e-18  Score=154.51  Aligned_cols=163  Identities=19%  Similarity=0.244  Sum_probs=117.7

Q ss_pred             CCCCEEeccCCcCcc-cCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCC
Q 036984          311 PQISYLLLANNYIEG-EIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSP  389 (603)
Q Consensus       311 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (603)
                      +.+++|+|++|+|+. ..+..|..+++|+.|++++|++....+                                     
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~-------------------------------------   71 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-------------------------------------   71 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-------------------------------------
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc-------------------------------------
Confidence            356666666666654 334566777777777777777763332                                     


Q ss_pred             CCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccC
Q 036984          390 MGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIV  469 (603)
Q Consensus       390 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  469 (603)
                          ..+..+++|++|+|++|++++..+.+|.++++|++|+|++|+|++..+..|.++++|++|++++|++.+..+...-
T Consensus        72 ----~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~  147 (192)
T d1w8aa_          72 ----NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             ----TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             ----cccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH
Confidence                2334466777888888888877778899999999999999999988888999999999999999999865442222


Q ss_pred             CCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCCCCCC
Q 036984          470 LTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSC  517 (603)
Q Consensus       470 l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~~~~C  517 (603)
                      ...++.+.+..|.+.+..|..+   ..++..++..|.+.|..+-...|
T Consensus       148 ~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C~~~~~~g~  192 (192)
T d1w8aa_         148 AEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSSENSEGC  192 (192)
T ss_dssp             HHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCCCCC---CC
T ss_pred             hhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcCCCCCCCCC
Confidence            3346777888889988888654   44566788899988865544333

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.6e-21  Score=196.83  Aligned_cols=390  Identities=17%  Similarity=0.108  Sum_probs=204.4

Q ss_pred             CCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCcc----Cccc-CCCCCEEEccCCCCCcCCc----hhhc
Q 036984           32 ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLL----GAWQ-TTSLQELNVASNKLTRNFP----LGLC  102 (603)
Q Consensus        32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~-~~~L~~L~Ls~n~l~~~~~----~~~~  102 (603)
                      ++|+.||+++++++...+ ..-+..++++++|+|++|.+++...    .++. +++|++|+|++|.++....    ..+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~-~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARW-AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHH-HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHH-HHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            368999999999986322 2346678999999999999875432    2334 8999999999999864222    2222


Q ss_pred             -CCCCCcEEeccCCCCccC----cCccCCCCCCCCEEEcccCcCCccCCc----ccccCCCCCcEEEccCceeeeecC--
Q 036984          103 -ELVLLRELYIDNNDLSGS----LPLCLTNLTSLQVLDVSYNQLTESISS----SPLMLLTSIEELILSNNHFQIPIS--  171 (603)
Q Consensus       103 -~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~--  171 (603)
                       ...+|++|++++|+++..    ++.++..+++|++|++++|.+.+....    ........................  
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence             235799999999999753    345688899999999999988632111    001112223344443332221100  


Q ss_pred             -ccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCc----Chhh-ccCCCCCEEEcCCCcccCCCCC
Q 036984          172 -LEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTF----PKFL-YHQHDLKNADLSHLNLSGEFPN  245 (603)
Q Consensus       172 -~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~-~~l~~L~~L~L~~n~i~~~~~~  245 (603)
                       ...+....                        .++.++++.+......    ...+ ........+++..+.+......
T Consensus       161 ~~~~l~~~~------------------------~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~  216 (460)
T d1z7xw1         161 LASVLRAKP------------------------DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR  216 (460)
T ss_dssp             HHHHHHHCT------------------------TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred             ccccccccc------------------------ccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence             00111111                        2233333333221110    0001 1112334445544433211000


Q ss_pred             -CCccccccCCccEEEccCcccccc----CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccC
Q 036984          246 -WLMPIHCLQKLATLDVSNNFFQGH----IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLAN  320 (603)
Q Consensus       246 -~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~  320 (603)
                       ....+...+.++.+++++|.+...    .........+.++.+++++|.+.....    +.....+...+.++.+++++
T Consensus       217 ~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~----~~~~~~l~~~~~l~~l~l~~  292 (460)
T d1z7xw1         217 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC----GDLCRVLRAKESLKELSLAG  292 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH----HHHHHHHHHCTTCCEEECTT
T ss_pred             cccccccccccccccchhhccccccccchhhccccccccccccccccccccccccc----cccccccccccccccccccc
Confidence             000022345566666666554311    111122224456666666665432110    01122333456666777777


Q ss_pred             CcCcccCCccc-----cCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchh
Q 036984          321 NYIEGEIPAQL-----CQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEET  395 (603)
Q Consensus       321 n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (603)
                      |.+++.....+     .....|+.+++++|.++......+.                                     ..
T Consensus       293 n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~-------------------------------------~~  335 (460)
T d1z7xw1         293 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-------------------------------------SV  335 (460)
T ss_dssp             CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH-------------------------------------HH
T ss_pred             ccccccccchhhccccccccccccccccccchhhhhhhhcc-------------------------------------cc
Confidence            76653222111     2234677777777766532111111                                     12


Q ss_pred             hhhcccceEEECcCCCCcccC----chhcc-CcCcCCEEeccccccccc----CCcCCcCCCCCCEEeCCCCcCcccCC-
Q 036984          396 VQILTSMSGIDLSCNKLTGEI----PTQIG-YLTRIRALNLSHNNLTGT----IPITFSNLKQIESLDLSYNLLHGKIP-  465 (603)
Q Consensus       396 ~~~l~~L~~L~Ls~n~l~~~~----~~~l~-~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~-  465 (603)
                      ....++|++|+|++|.+++..    +..+. ..+.|++|+|++|.|++.    +++.+..+++|++||+++|+++.... 
T Consensus       336 ~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~  415 (460)
T d1z7xw1         336 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL  415 (460)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHH
T ss_pred             cccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHH
Confidence            233456777777777775432    22222 345677777777777642    33345556777777777777764322 


Q ss_pred             ----Ccc-CCCCCCceecccCcccccC
Q 036984          466 ----QLI-VLTTLAVFRVAYNNLSGKI  487 (603)
Q Consensus       466 ----~~~-~l~~L~~L~l~~N~l~~~~  487 (603)
                          .+. ....|+.|++++|.+....
T Consensus       416 ~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         416 QLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             HHHHHHHhCCCccCEEECCCCCCCHHH
Confidence                121 2335777777777776433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=4.2e-17  Score=150.74  Aligned_cols=205  Identities=20%  Similarity=0.276  Sum_probs=162.0

Q ss_pred             CCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcccc
Q 036984          229 LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID  308 (603)
Q Consensus       229 L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~  308 (603)
                      +..++++.+++++..+     ...+.+|+.|++.+|+++ .++ .+ +.+++|+.|++++|.+.++.          .+.
T Consensus        21 ~~~~~l~~~~~~d~~~-----~~~l~~L~~L~l~~~~i~-~l~-~l-~~l~~L~~L~ls~n~i~~~~----------~l~   82 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTVT-----QADLDGITTLSAFGTGVT-TIE-GV-QYLNNLIGLELKDNQITDLA----------PLK   82 (227)
T ss_dssp             HHHHHTTCSSTTSEEC-----HHHHHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG----------GGT
T ss_pred             HHHHHhCCCCcCCcCC-----HHHcCCcCEEECCCCCCC-cch-hH-hcCCCCcEeecCCceeeccc----------ccc
Confidence            3445667777665432     567889999999999998 564 34 45999999999999876542          266


Q ss_pred             CCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCC
Q 036984          309 RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGS  388 (603)
Q Consensus       309 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (603)
                      .+++++++++++|.++..  ..+.++++|+.++++++...+.                                      
T Consensus        83 ~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~--------------------------------------  122 (227)
T d1h6ua2          83 NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV--------------------------------------  122 (227)
T ss_dssp             TCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC--------------------------------------
T ss_pred             cccccccccccccccccc--cccccccccccccccccccccc--------------------------------------
Confidence            789999999999998743  3578899999999999987632                                      


Q ss_pred             CCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCcc
Q 036984          389 PMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLI  468 (603)
Q Consensus       389 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  468 (603)
                           ..+...+.+..+.++++.+....  .+..+++|++|++++|.+++..  .+.++++|++||+++|++++ ++.+.
T Consensus       123 -----~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~l~  192 (227)
T d1h6ua2         123 -----TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISPLA  192 (227)
T ss_dssp             -----GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGGGG
T ss_pred             -----chhccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCC-Chhhc
Confidence                 12334678889999999887443  4778899999999999998443  37899999999999999984 66788


Q ss_pred             CCCCCCceecccCcccccCCCcccccCCCCccccc
Q 036984          469 VLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYE  503 (603)
Q Consensus       469 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~  503 (603)
                      .+++|++|++++|+++.. |. ++.++.++.++++
T Consensus       193 ~l~~L~~L~Ls~N~lt~i-~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         193 SLPNLIEVHLKNNQISDV-SP-LANTSNLFIVTLT  225 (227)
T ss_dssp             GCTTCCEEECTTSCCCBC-GG-GTTCTTCCEEEEE
T ss_pred             CCCCCCEEECcCCcCCCC-cc-cccCCCCCEEEee
Confidence            999999999999999854 43 6788888888775

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=5.4e-17  Score=147.71  Aligned_cols=165  Identities=25%  Similarity=0.409  Sum_probs=104.9

Q ss_pred             cCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCcccc
Q 036984          253 LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLC  332 (603)
Q Consensus       253 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  332 (603)
                      +.+|+.|++++|.+. .++. + +.+++|++|++++|.+.++.          .++.+++|++|++++|++++. + .+.
T Consensus        45 L~~L~~L~l~~~~i~-~l~~-l-~~l~~L~~L~L~~n~i~~l~----------~~~~l~~L~~L~l~~n~i~~l-~-~l~  109 (210)
T d1h6ta2          45 LNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIK----------PLANLKNLGWLFLDENKVKDL-S-SLK  109 (210)
T ss_dssp             HHTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECCSSCCCCG-G-GGT
T ss_pred             hcCccEEECcCCCCC-Cchh-H-hhCCCCCEEeCCCccccCcc----------ccccCcccccccccccccccc-c-ccc
Confidence            456666666666665 3332 2 33666777666666654332          234566777777777777643 2 466


Q ss_pred             CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCC
Q 036984          333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL  412 (603)
Q Consensus       333 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  412 (603)
                      .+++|+.|++++|.+..                                           ...+..++.++.+++++|.+
T Consensus       110 ~l~~L~~L~l~~~~~~~-------------------------------------------~~~l~~l~~l~~l~~~~n~l  146 (210)
T d1h6ta2         110 DLKKLKSLSLEHNGISD-------------------------------------------INGLVHLPQLESLYLGNNKI  146 (210)
T ss_dssp             TCTTCCEEECTTSCCCC-------------------------------------------CGGGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccc-------------------------------------------cccccccccccccccccccc
Confidence            67777777777776641                                           11234456777777777777


Q ss_pred             cccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceeccc
Q 036984          413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAY  480 (603)
Q Consensus       413 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~  480 (603)
                      ++.  ..+..+++|+++++++|++++..  .+.++++|++|++++|+++ .+|.+..+++|++|++++
T Consensus       147 ~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         147 TDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEE
T ss_pred             ccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCCCCC-CChhhcCCCCCCEEEccC
Confidence            632  24566777788888888777432  2667777888888888777 456677777777777764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.7e-17  Score=151.59  Aligned_cols=104  Identities=17%  Similarity=0.180  Sum_probs=61.8

Q ss_pred             CEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccC-cCccCCCCCCCCEEEccc-
Q 036984           61 QELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGS-LPLCLTNLTSLQVLDVSY-  138 (603)
Q Consensus        61 ~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~-  138 (603)
                      ++++.++..++.+|...+  +++++|++++|.++.+.+..|.++++|++|++++|.+... .+.+|.++++++++.+.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            456666666666655442  4566666666666665555666666666666666665532 234566666666666553 


Q ss_pred             CcCCccCCcccccCCCCCcEEEccCceee
Q 036984          139 NQLTESISSSPLMLLTSIEELILSNNHFQ  167 (603)
Q Consensus       139 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~  167 (603)
                      |.+. ..+...|..+++|+++++++|.+.
T Consensus        89 n~l~-~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          89 NNLL-YINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             TTCC-EECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccc-ccccccccccccccccccchhhhc
Confidence            4444 333335666666777766666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.6e-16  Score=143.33  Aligned_cols=72  Identities=35%  Similarity=0.516  Sum_probs=35.4

Q ss_pred             cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCc
Q 036984          399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAV  475 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~  475 (603)
                      +++|+.|++++|++. .++ .+..+++|+.|++++|++++..  .++++++|++|++++|+++ .++.+..+++|++
T Consensus       127 l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~-~i~~l~~L~~L~~  198 (199)
T d2omxa2         127 LTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS-DISVLAKLTNLES  198 (199)
T ss_dssp             CTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSE
T ss_pred             hhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC-CCccccCCCCCCc
Confidence            445555555555554 222 3445555555555555555321  2455555555555555555 2334444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.6e-16  Score=148.56  Aligned_cols=105  Identities=13%  Similarity=0.149  Sum_probs=58.6

Q ss_pred             CEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccC
Q 036984          230 KNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDR  309 (603)
Q Consensus       230 ~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~  309 (603)
                      +.++.++..++ .+|..+     .+++++|++++|.++ .+|...|..+++|++|++++|.+.+.       .-+..+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l-----~~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~-------i~~~~f~~   76 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL-----PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV-------IEADVFSN   76 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS-----CSCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCE-------ECSSSEES
T ss_pred             CEEEEeCCCCC-CcCCCC-----CCCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccce-------eecccccc
Confidence            44555555544 444321     135666666666665 55555555566666666666654321       11223444


Q ss_pred             CCCCCEEeccC-CcCcccCCccccCCCCCCEEecCCCcCc
Q 036984          310 LPQISYLLLAN-NYIEGEIPAQLCQLKEVRLIDLSHNNLS  348 (603)
Q Consensus       310 l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  348 (603)
                      +++++++.+.. |.+....+..|.++++|+.+++++|.+.
T Consensus        77 l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          77 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhc
Confidence            66666666543 4555555566666666777766666664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=2.7e-17  Score=147.50  Aligned_cols=177  Identities=17%  Similarity=0.222  Sum_probs=102.0

Q ss_pred             cEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCC
Q 036984          257 ATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKE  336 (603)
Q Consensus       257 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  336 (603)
                      +.++.++++++ .+|..+.   +++++|+|++|.+...       ..+..|..+++|++|++++|.+....+..+..+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~-------~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~   79 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRI-------SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSB-------CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCccc-------ccccccCCCceEeeeeccccccccccccccccccc
Confidence            45556666665 5555442   3566666666555321       11233444666666666666666666666666666


Q ss_pred             CCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccC
Q 036984          337 VRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEI  416 (603)
Q Consensus       337 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  416 (603)
                      |++|++++|+++...|                                         ..|..+++|++|+|++|+|++..
T Consensus        80 L~~L~Ls~N~l~~l~~-----------------------------------------~~F~~l~~L~~L~L~~N~l~~i~  118 (192)
T d1w8aa_          80 IQELQLGENKIKEISN-----------------------------------------KMFLGLHQLKTLNLYDNQISCVM  118 (192)
T ss_dssp             CCEEECCSCCCCEECS-----------------------------------------SSSTTCTTCCEEECCSSCCCEEC
T ss_pred             cceeeeccccccccCH-----------------------------------------HHHhCCCcccccccCCccccccC
Confidence            6666666666653222                                         22344566667777777776666


Q ss_pred             chhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCC
Q 036984          417 PTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIP  488 (603)
Q Consensus       417 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p  488 (603)
                      +..|..+++|++|+|++|.+....+.. .-...++.+.+..|.+++..|  ..+..++.++++.|++.+..+
T Consensus       119 ~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p--~~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         119 PGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP--SKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             TTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSS--TTTTTSBGGGSCTTTCCCCCC
T ss_pred             HHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCC--hhhcCCEeeecCHhhCcCCCC
Confidence            666777777777777777766322111 111235555666666665555  234456677777777776444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.8e-16  Score=141.31  Aligned_cols=167  Identities=22%  Similarity=0.312  Sum_probs=133.0

Q ss_pred             ccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccC
Q 036984          224 YHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSI  303 (603)
Q Consensus       224 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~  303 (603)
                      ..+.+|+.|++++|.+.+. +.    +..+++|++|++++|.++ .++. + ..+++|+.|++++|++.+++        
T Consensus        43 ~~L~~L~~L~l~~~~i~~l-~~----l~~l~~L~~L~L~~n~i~-~l~~-~-~~l~~L~~L~l~~n~i~~l~--------  106 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSV-QG----IQYLPNVTKLFLNGNKLT-DIKP-L-ANLKNLGWLFLDENKVKDLS--------  106 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCC-TT----GGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCGG--------
T ss_pred             HHhcCccEEECcCCCCCCc-hh----HhhCCCCCEEeCCCcccc-Cccc-c-ccCccccccccccccccccc--------
Confidence            3567889999999988643 22    678899999999999998 4553 2 44889999999999876542        


Q ss_pred             CccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEE
Q 036984          304 PNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYF  383 (603)
Q Consensus       304 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (603)
                        .+..+++|+.|++++|.+...  ..+..++.++.+++++|.+++.                                 
T Consensus       107 --~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~---------------------------------  149 (210)
T d1h6ta2         107 --SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---------------------------------  149 (210)
T ss_dssp             --GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---------------------------------
T ss_pred             --ccccccccccccccccccccc--cccccccccccccccccccccc---------------------------------
Confidence              356689999999999998743  4578899999999999988631                                 


Q ss_pred             ecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCC
Q 036984          384 SPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY  457 (603)
Q Consensus       384 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  457 (603)
                                .....+++|+.+++++|++++. + .+.++++|++|++++|++++ +| .+.++++|++|+|++
T Consensus       150 ----------~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         150 ----------TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ----------GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ----------cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence                      1234578999999999999854 3 38899999999999999984 44 588999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.1e-16  Score=140.55  Aligned_cols=180  Identities=22%  Similarity=0.337  Sum_probs=136.8

Q ss_pred             CccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCC
Q 036984          255 KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQL  334 (603)
Q Consensus       255 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  334 (603)
                      +.....++.+.+++.++..   .++++++|++++|.+.+++          .++.+++|++|++++|++++..+  ++++
T Consensus        19 ~~i~~~l~~~~~~~~~~~~---~l~~l~~L~l~~~~i~~l~----------~l~~l~nL~~L~Ls~N~l~~~~~--l~~l   83 (199)
T d2omxa2          19 EKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKSID----------GVEYLNNLTQINFSNNQLTDITP--LKNL   83 (199)
T ss_dssp             HHHHHHTTCSSTTSEECHH---HHTTCCEEECTTSCCCCCT----------TGGGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred             HHHHHHhCCCCCCCccCHH---HhcCCCEEECCCCCCCCcc----------ccccCCCcCcCccccccccCccc--ccCC
Confidence            3334456666666433322   2568888888888876553          24558899999999999986543  8889


Q ss_pred             CCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcc
Q 036984          335 KEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG  414 (603)
Q Consensus       335 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  414 (603)
                      ++|++|++++|.+.. +                                          ..+..++.|+.|++++|.+..
T Consensus        84 ~~L~~L~l~~n~~~~-~------------------------------------------~~l~~l~~L~~L~l~~~~~~~  120 (199)
T d2omxa2          84 TKLVDILMNNNQIAD-I------------------------------------------TPLANLTNLTGLTLFNNQITD  120 (199)
T ss_dssp             TTCCEEECCSSCCCC-C------------------------------------------GGGTTCTTCSEEECCSSCCCC
T ss_pred             ccccccccccccccc-c------------------------------------------ccccccccccccccccccccc
Confidence            999999999998752 1                                          124557889999999998874


Q ss_pred             cCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCccccc
Q 036984          415 EIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQF  494 (603)
Q Consensus       415 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l  494 (603)
                      .  ..+..+++|+.|++++|++.. + +.+..+++|+.|++++|++++ ++.+..+++|++|++++|+++. +| .+.++
T Consensus       121 ~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L  193 (199)
T d2omxa2         121 I--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LKPLANLTTLERLDISSNKVSD-IS-VLAKL  193 (199)
T ss_dssp             C--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC-CG-GGGGC
T ss_pred             c--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-CccccCCCCCCEEECCCCCCCC-Cc-cccCC
Confidence            3  347889999999999999984 3 358889999999999999984 5668899999999999999985 44 36667


Q ss_pred             CCCCc
Q 036984          495 STFEE  499 (603)
Q Consensus       495 ~~l~~  499 (603)
                      +.++.
T Consensus       194 ~~L~~  198 (199)
T d2omxa2         194 TNLES  198 (199)
T ss_dssp             TTCSE
T ss_pred             CCCCc
Confidence            66654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.5e-15  Score=144.98  Aligned_cols=63  Identities=19%  Similarity=0.177  Sum_probs=29.9

Q ss_pred             hcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCC-cCcccCCccccCCCCCCEEecCCC
Q 036984          276 TYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANN-YIEGEIPAQLCQLKEVRLIDLSHN  345 (603)
Q Consensus       276 ~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n  345 (603)
                      ..+|+|++|++++|...       ++.....+..+++|++|++++| .+++.....+..+++|+.|+++++
T Consensus       172 ~~~~~L~~L~L~~~~~i-------td~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVML-------KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTC-------CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCC-------CchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            33556666655554211       1112223344555555655553 344443444555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=3.9e-14  Score=116.00  Aligned_cols=102  Identities=27%  Similarity=0.267  Sum_probs=67.3

Q ss_pred             cEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccC
Q 036984           35 RLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDN  114 (603)
Q Consensus        35 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  114 (603)
                      |.|+|++|+++..    ..+.++++|++|++++|.++++++....+++|++|++++|.+++. | .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~l----~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVL----CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSC----CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCC----cccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc-C-ccccccccCeEECCC
Confidence            4677777777642    236677777777777777777655433377777777777777663 3 367777777777777


Q ss_pred             CCCccCc-CccCCCCCCCCEEEcccCcCC
Q 036984          115 NDLSGSL-PLCLTNLTSLQVLDVSYNQLT  142 (603)
Q Consensus       115 n~i~~~~-~~~~~~l~~L~~L~L~~n~i~  142 (603)
                      |+++... ...++.+++|++|++++|.++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            7776432 245666777777777777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-14  Score=124.43  Aligned_cols=126  Identities=17%  Similarity=0.121  Sum_probs=73.5

Q ss_pred             cCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCC
Q 036984          308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG  387 (603)
Q Consensus       308 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (603)
                      .+..++++|+|++|+|+.+ +..+..+++|+.|++++|+++. +                                    
T Consensus        15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l------------------------------------   56 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-L------------------------------------   56 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-E------------------------------------
T ss_pred             cCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-c------------------------------------
Confidence            3455666677777776643 4445566667777777776641 1                                    


Q ss_pred             CCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCC-cCCcCCCCCCEEeCCCCcCcccCC-
Q 036984          388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP-ITFSNLKQIESLDLSYNLLHGKIP-  465 (603)
Q Consensus       388 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-  465 (603)
                            ..+..+++|++|++++|.+++..+..+..+++|++|++++|+++.... ..+..+++|++|++++|+++.... 
T Consensus        57 ------~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~  130 (162)
T d1a9na_          57 ------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY  130 (162)
T ss_dssp             ------CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH
T ss_pred             ------CCcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccch
Confidence                  012335566666666666664444445566677777777777663221 345666777777777777663221 


Q ss_pred             ---CccCCCCCCcee
Q 036984          466 ---QLIVLTTLAVFR  477 (603)
Q Consensus       466 ---~~~~l~~L~~L~  477 (603)
                         .++.+|+|++||
T Consensus       131 r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         131 RLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHHHHHHCTTCSEET
T ss_pred             HHHHHHHCCCcCeeC
Confidence               244566666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.2e-14  Score=123.71  Aligned_cols=124  Identities=22%  Similarity=0.123  Sum_probs=70.0

Q ss_pred             cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984           31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE  109 (603)
Q Consensus        31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (603)
                      +..+++|||++|+|+..   +..+..+++|++|++++|.+++++  .+. +++|++|++++|+++...+..+..+++|++
T Consensus        17 ~~~lr~L~L~~n~I~~i---~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             TTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcEEECCCCCCCcc---CccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            34566666666666542   233455666666666666666552  233 666666666666666644444556666666


Q ss_pred             EeccCCCCccCcC-ccCCCCCCCCEEEcccCcCCccCCc---ccccCCCCCcEEE
Q 036984          110 LYIDNNDLSGSLP-LCLTNLTSLQVLDVSYNQLTESISS---SPLMLLTSIEELI  160 (603)
Q Consensus       110 L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~~l~~L~~L~  160 (603)
                      |++++|+++.... ..+.++++|++|++++|.++. .+.   ..+..+++|+.||
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            6666666653211 345566666666666666642 221   1345556666555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.1e-15  Score=142.70  Aligned_cols=150  Identities=16%  Similarity=0.155  Sum_probs=78.2

Q ss_pred             ceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCc-cCccc-CCCCCE
Q 036984            8 EHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSL-LGAWQ-TTSLQE   85 (603)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~-~~~L~~   85 (603)
                      +.+|+++..+.. ..+..+..   ..+..+.++...+....   .......+|++|+++++.++... ...+. +++|++
T Consensus         3 ~~lDLs~~~l~~-~~l~~l~~---~~~~~lrl~~~~~~~~~---~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~   75 (284)
T d2astb2           3 QTLDLTGKNLHP-DVTGRLLS---QGVIAFRCPRSFMDQPL---AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN   75 (284)
T ss_dssp             SEEECTTCBCCH-HHHHHHHH---TTCSEEECTTCEECSCC---CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             CEEECCCCCCCc-hHHHHHHh---ccceEeeccccccccch---hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccc
Confidence            456777654421 11112221   34556666555443211   12234457777777777665432 23344 677777


Q ss_pred             EEccCCCCCcCCchhhcCCCCCcEEeccCC-CCccCc-CccCCCCCCCCEEEcccC-cCCccCCccccc-CCCCCcEEEc
Q 036984           86 LNVASNKLTRNFPLGLCELVLLRELYIDNN-DLSGSL-PLCLTNLTSLQVLDVSYN-QLTESISSSPLM-LLTSIEELIL  161 (603)
Q Consensus        86 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~-~l~~L~~L~l  161 (603)
                      |++++|.+.+..+..+..+++|++|++++| .++... .....++++|++|+++++ .+++......+. ..++|+.|++
T Consensus        76 L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l  155 (284)
T d2astb2          76 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  155 (284)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             ccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhh
Confidence            777777776656666777777777777774 444211 111235667777777764 333211110122 2356666666


Q ss_pred             cCc
Q 036984          162 SNN  164 (603)
Q Consensus       162 ~~n  164 (603)
                      +++
T Consensus       156 ~~~  158 (284)
T d2astb2         156 SGY  158 (284)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2.6e-13  Score=110.95  Aligned_cols=103  Identities=25%  Similarity=0.286  Sum_probs=88.9

Q ss_pred             CEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccC
Q 036984           61 QELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN  139 (603)
Q Consensus        61 ~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  139 (603)
                      |+|++++|+++.++.  +. +++|++|++++|+++. +|..++.+++|++|++++|.+++. | .++++++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            689999999998753  55 9999999999999987 677899999999999999999854 3 5899999999999999


Q ss_pred             cCCccCCcccccCCCCCcEEEccCceeee
Q 036984          140 QLTESISSSPLMLLTSIEELILSNNHFQI  168 (603)
Q Consensus       140 ~i~~~~~~~~~~~l~~L~~L~l~~n~~~~  168 (603)
                      ++.+......+..+++|++|++++|+++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            99843223468899999999999999863

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=1.7e-14  Score=142.01  Aligned_cols=86  Identities=20%  Similarity=0.238  Sum_probs=45.6

Q ss_pred             cccceEEECcCCCCccc----CchhccCcCcCCEEecccccccccCCc----CCc--CCCCCCEEeCCCCcCcccC----
Q 036984          399 LTSMSGIDLSCNKLTGE----IPTQIGYLTRIRALNLSHNNLTGTIPI----TFS--NLKQIESLDLSYNLLHGKI----  464 (603)
Q Consensus       399 l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~--~l~~L~~L~Ls~N~l~~~~----  464 (603)
                      .++|+.|++++|.++..    +...+..+++|++|+|++|.|++....    .+.  ..+.|++||+++|.|+...    
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l  293 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  293 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHH
Confidence            45566666666655432    223445556666666666666542111    121  1245677777777665321    


Q ss_pred             C-Ccc-CCCCCCceecccCccc
Q 036984          465 P-QLI-VLTTLAVFRVAYNNLS  484 (603)
Q Consensus       465 ~-~~~-~l~~L~~L~l~~N~l~  484 (603)
                      . .+. +.++|+.|++++|++.
T Consensus       294 ~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         294 KTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHccCCCCCEEECCCCcCC
Confidence            1 221 3566777777777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.5e-13  Score=113.96  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=90.4

Q ss_pred             ccceEEECcCCCCcccCchhccCcCcCCEEecccc-cccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCcee
Q 036984          400 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHN-NLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFR  477 (603)
Q Consensus       400 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~  477 (603)
                      ...+.++.++++++ ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+|+...+ .|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34566888888888 56778889999999999766 4887777889999999999999999997666 688999999999


Q ss_pred             cccCcccccCCCcccccCCCCcccccCCcCCCCC
Q 036984          478 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQ  511 (603)
Q Consensus       478 l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~  511 (603)
                      |++|+++...+.. .+...++.++++||||.|.+
T Consensus        87 Ls~N~l~~l~~~~-~~~~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          87 LSFNALESLSWKT-VQGLSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             CCSSCCSCCCSTT-TCSCCCCEEECCSSCCCCCG
T ss_pred             ccCCCCcccChhh-hccccccccccCCCcccCCc
Confidence            9999999544444 44457889999999999843

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=2.9e-14  Score=140.32  Aligned_cols=250  Identities=20%  Similarity=0.251  Sum_probs=157.6

Q ss_pred             cChhhccCCCCCEEEcCCCcccCCCCCCC-ccccccCCccEEEccCcccc---ccCCh------hhhhcCCCCcEEecCC
Q 036984          219 FPKFLYHQHDLKNADLSHLNLSGEFPNWL-MPIHCLQKLATLDVSNNFFQ---GHIPV------EIGTYLPGLMHLNLSR  288 (603)
Q Consensus       219 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~~l~~L~~L~Ls~n~~~---~~~~~------~~~~~l~~L~~L~L~~  288 (603)
                      +...+....+++.|+|++|.+.......+ ..+...++|+.++++++...   ...+.      .....+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            34456666777777777776643211110 01345577777777766432   11111      1122356788888877


Q ss_pred             CCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCcc-------------ccCCCCCCEEecCCCcCccCCChhh
Q 036984          289 NAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQ-------------LCQLKEVRLIDLSHNNLSGHIPFCL  355 (603)
Q Consensus       289 n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~Ls~n~l~~~~~~~~  355 (603)
                      |.+.+....    .+...+..+++|++|++++|.+.......             ....+.|+.+++++|++.......+
T Consensus       103 n~i~~~~~~----~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l  178 (344)
T d2ca6a1         103 NAFGPTAQE----PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW  178 (344)
T ss_dssp             CCCCTTTHH----HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             ccccccccc----chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccc
Confidence            765432211    12233445678888888888764321111             1346778888888887752211111


Q ss_pred             hcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCccc-----CchhccCcCcCCEEe
Q 036984          356 VNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE-----IPTQIGYLTRIRALN  430 (603)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~  430 (603)
                                                           ...+...+.|+.|++++|.++..     +...+..+++|+.|+
T Consensus       179 -------------------------------------~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~  221 (344)
T d2ca6a1         179 -------------------------------------AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD  221 (344)
T ss_dssp             -------------------------------------HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEE
T ss_pred             -------------------------------------cchhhhhhhhcccccccccccccccccchhhhhcchhhhcccc
Confidence                                                 12344578899999999998743     234567789999999


Q ss_pred             ccccccccc----CCcCCcCCCCCCEEeCCCCcCcccCC-----Ccc--CCCCCCceecccCccccc----CCCccc-cc
Q 036984          431 LSHNNLTGT----IPITFSNLKQIESLDLSYNLLHGKIP-----QLI--VLTTLAVFRVAYNNLSGK----IPDRVA-QF  494 (603)
Q Consensus       431 Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~--~l~~L~~L~l~~N~l~~~----~p~~~~-~l  494 (603)
                      |++|.++..    +...+..+++|++|++++|.|++...     .+.  ..+.|++|++++|++...    +...+. ..
T Consensus       222 Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~  301 (344)
T d2ca6a1         222 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM  301 (344)
T ss_dssp             CCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccC
Confidence            999998743    34557788999999999999985322     222  357899999999998642    222232 46


Q ss_pred             CCCCcccccCCcCCC
Q 036984          495 STFEEDSYEGNPFLY  509 (603)
Q Consensus       495 ~~l~~~~l~gn~~~c  509 (603)
                      +.++.++++||.+..
T Consensus       302 ~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         302 PDLLFLELNGNRFSE  316 (344)
T ss_dssp             TTCCEEECTTSBSCT
T ss_pred             CCCCEEECCCCcCCC
Confidence            788999999998754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=9.6e-12  Score=106.08  Aligned_cols=110  Identities=27%  Similarity=0.228  Sum_probs=73.0

Q ss_pred             CCCEEEccCCcCCCCccCcccCCCCCEEEccCC-CCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcc
Q 036984           59 HLQELYIRDNDLRDSLLGAWQTTSLQELNVASN-KLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVS  137 (603)
Q Consensus        59 ~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  137 (603)
                      ....++.+++.+.+.+.....+++|++|++++| .++.+.+.+|.++++|+.|++++|+++.+.+.+|.++++|++|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344566666666665544434667777777655 3666666667777777777777777776667777777777777777


Q ss_pred             cCcCCccCCcccccCCCCCcEEEccCceeeeec
Q 036984          138 YNQLTESISSSPLMLLTSIEELILSNNHFQIPI  170 (603)
Q Consensus       138 ~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  170 (603)
                      +|+++ .++...+..+ +|++|++++|++....
T Consensus        89 ~N~l~-~l~~~~~~~~-~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          89 FNALE-SLSWKTVQGL-SLQELVLSGNPLHCSC  119 (156)
T ss_dssp             SSCCS-CCCSTTTCSC-CCCEEECCSSCCCCCG
T ss_pred             CCCCc-ccChhhhccc-cccccccCCCcccCCc
Confidence            77776 4665455443 5777777777775443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=2.4e-13  Score=121.39  Aligned_cols=127  Identities=22%  Similarity=0.290  Sum_probs=80.1

Q ss_pred             ccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEe
Q 036984          305 NWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFS  384 (603)
Q Consensus       305 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (603)
                      ..+..+++|++|++++|.++.+ + .+..+++|+.|++++|.++. +|                                
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~--------------------------------   86 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IE--------------------------------   86 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CS--------------------------------
T ss_pred             hHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-cc--------------------------------
Confidence            3445566677777777776643 2 36667777777777777652 22                                


Q ss_pred             cCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCC-cCCcCCCCCCEEeCCCCcCccc
Q 036984          385 PNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP-ITFSNLKQIESLDLSYNLLHGK  463 (603)
Q Consensus       385 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~  463 (603)
                               .....++.|+.|++++|.++. + ..+..+++|++|++++|+|++... ..+..+++|+.|++++|++...
T Consensus        87 ---------~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          87 ---------NLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             ---------SHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ---------ccccccccccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence                     112224567777777777763 2 246677778888888887774322 3567777888888888877644


Q ss_pred             CCC-----------ccCCCCCCcee
Q 036984          464 IPQ-----------LIVLTTLAVFR  477 (603)
Q Consensus       464 ~~~-----------~~~l~~L~~L~  477 (603)
                      .+.           +..+|+|+.||
T Consensus       156 ~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         156 YKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccchhhHHHHHHHHCCCcCEeC
Confidence            331           34577777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=1.4e-13  Score=123.04  Aligned_cols=130  Identities=22%  Similarity=0.223  Sum_probs=101.3

Q ss_pred             CCEEeccCC--cCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCC
Q 036984          313 ISYLLLANN--YIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPM  390 (603)
Q Consensus       313 L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (603)
                      .+.+++.+.  .+. ..+..+..+++|++|++++|+++. +                                       
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i---------------------------------------   63 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-I---------------------------------------   63 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-C---------------------------------------
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-c---------------------------------------
Confidence            444555443  232 455678899999999999999962 1                                       


Q ss_pred             CcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC--Ccc
Q 036984          391 GKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP--QLI  468 (603)
Q Consensus       391 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~  468 (603)
                         ..+..+++|+.|++++|.++ .++.....+++|++|++++|+++..  ..+.++++|+.|++++|+++....  .+.
T Consensus        64 ---~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~  137 (198)
T d1m9la_          64 ---SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLA  137 (198)
T ss_dssp             ---CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHT
T ss_pred             ---ccccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccccccccccccchhcccccccccc
Confidence               12566889999999999998 5555556667899999999999954  347788999999999999985432  678


Q ss_pred             CCCCCCceecccCcccccCCC
Q 036984          469 VLTTLAVFRVAYNNLSGKIPD  489 (603)
Q Consensus       469 ~l~~L~~L~l~~N~l~~~~p~  489 (603)
                      .+++|+.|++++|++....+.
T Consensus       138 ~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         138 ALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             TTTTCSEEEECSSHHHHHHCT
T ss_pred             CCCccceeecCCCccccCccc
Confidence            899999999999999865554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.6e-08  Score=84.03  Aligned_cols=82  Identities=26%  Similarity=0.248  Sum_probs=50.8

Q ss_pred             cCCCCCCCEEEccCCcCCCCcc--Cccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCc-------
Q 036984           54 FCQLVHLQELYIRDNDLRDSLL--GAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPL-------  123 (603)
Q Consensus        54 ~~~l~~L~~L~Ls~n~i~~~~~--~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-------  123 (603)
                      +..+++|++|+|++|+|+++.+  ..+. +++|+.|++++|.++...+..+....+|+.|++++|.+......       
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            3456777777777777766543  3334 67777777777777764443444455677777777777643322       


Q ss_pred             cCCCCCCCCEEE
Q 036984          124 CLTNLTSLQVLD  135 (603)
Q Consensus       124 ~~~~l~~L~~L~  135 (603)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            255677777775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=9.5e-09  Score=87.72  Aligned_cols=122  Identities=19%  Similarity=0.065  Sum_probs=79.3

Q ss_pred             CCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCC--chhhcCCCCCc
Q 036984           32 ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNF--PLGLCELVLLR  108 (603)
Q Consensus        32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~  108 (603)
                      ...+.||+++.....      .+..+..+..+...++.... ...++. +++|++|++++|+++...  +..+..+++|+
T Consensus        22 ~~~~~Ldls~l~~~~------~l~~~~~~~~l~~~~~~~~~-l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~   94 (162)
T d1koha1          22 GSQQALDLKGLRSDP------DLVAQNIDVVLNRRSSMAAT-LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLK   94 (162)
T ss_dssp             SSSCCBCCCCCSSCT------TTTTTTCCCCTTSHHHHHHH-HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCC
T ss_pred             hhhCeeecccCCCCc------hhhhccchhhcchhhhHhhh-hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccc
Confidence            356677777654321      23444444555555443332 233444 889999999999988743  34577889999


Q ss_pred             EEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCc------ccccCCCCCcEEE
Q 036984          109 ELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISS------SPLMLLTSIEELI  160 (603)
Q Consensus       109 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~------~~~~~l~~L~~L~  160 (603)
                      .|+|++|.++...+..+.+..+|+.|++++|.+......      ..+..+|+|+.||
T Consensus        95 ~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          95 ILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            999999999865443444456789999999988753332      1356678888776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.89  E-value=2.3e-06  Score=72.85  Aligned_cols=39  Identities=15%  Similarity=0.267  Sum_probs=19.5

Q ss_pred             CCCCCEEeccCC-cCccc----CCccccCCCCCCEEecCCCcCc
Q 036984          310 LPQISYLLLANN-YIEGE----IPAQLCQLKEVRLIDLSHNNLS  348 (603)
Q Consensus       310 l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  348 (603)
                      .++|++|+|+++ .++..    +...+...+.|+.|++++|.+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            355566666542 34322    2223445555666666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.76  E-value=6.1e-06  Score=70.12  Aligned_cols=111  Identities=23%  Similarity=0.273  Sum_probs=69.8

Q ss_pred             hcCCCcEEEccCC-cCCCCCC--CccccCCCCCCCEEEccCCcCCCCccCcc----c-CCCCCEEEccCCCCCcCC----
Q 036984           30 LMASLRLLSLSYS-RLNKNTI--LDQGFCQLVHLQELYIRDNDLRDSLLGAW----Q-TTSLQELNVASNKLTRNF----   97 (603)
Q Consensus        30 ~~~~L~~L~Ls~n-~i~~~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~-~~~L~~L~Ls~n~l~~~~----   97 (603)
                      ..++|++|+|+++ .+.....  +...+...++|++|++++|.+.+.....+    . .+.|++|++++|.+....    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3577888888764 3543211  22356677778888888887765433333    2 577888888888776422    


Q ss_pred             chhhcCCCCCcEEeccCCCCccC-------cCccCCCCCCCCEEEcccCc
Q 036984           98 PLGLCELVLLRELYIDNNDLSGS-------LPLCLTNLTSLQVLDVSYNQ  140 (603)
Q Consensus        98 ~~~~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~  140 (603)
                      ...+...+.|++|++++|.+...       +..++...+.|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            22455667788888887765422       23334456788888886653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.32  E-value=3.5e-05  Score=65.23  Aligned_cols=40  Identities=15%  Similarity=0.066  Sum_probs=21.6

Q ss_pred             CCCCCCEEeccC-CcCccc----CCccccCCCCCCEEecCCCcCc
Q 036984          309 RLPQISYLLLAN-NYIEGE----IPAQLCQLKEVRLIDLSHNNLS  348 (603)
Q Consensus       309 ~l~~L~~L~L~~-n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  348 (603)
                      +.++|++|++++ +.++..    +..++...+.|+.|++++|.++
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            345666666665 334322    2233445666666666666664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.10  E-value=4.3e-05  Score=64.64  Aligned_cols=83  Identities=20%  Similarity=0.140  Sum_probs=44.4

Q ss_pred             hcCCCcEEEccC-CcCCCCCC--CccccCCCCCCCEEEccCCcCCCCccCcc----c-CCCCCEEEccCCCCCcCC----
Q 036984           30 LMASLRLLSLSY-SRLNKNTI--LDQGFCQLVHLQELYIRDNDLRDSLLGAW----Q-TTSLQELNVASNKLTRNF----   97 (603)
Q Consensus        30 ~~~~L~~L~Ls~-n~i~~~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~-~~~L~~L~Ls~n~l~~~~----   97 (603)
                      ..++|++|++++ +.++....  +...+...++|++|++++|.++......+    . .+.++.+++++|.+....    
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            357777787776 34543221  22345567777777777777654433222    2 456666666666554321    


Q ss_pred             chhhcCCCCCcEEec
Q 036984           98 PLGLCELVLLRELYI  112 (603)
Q Consensus        98 ~~~~~~l~~L~~L~L  112 (603)
                      ...+...++|+.++|
T Consensus        95 ~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          95 VEALQSNTSLIELRI  109 (166)
T ss_dssp             HHGGGGCSSCCEEEC
T ss_pred             HHHHHhCccccEEee
Confidence            123344455554333