Citrus Sinensis ID: 036991


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG
ccEEccccHHHHHHHccccccEEEEEcccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHHHHHcccccccccccccccccccccc
cEEEEEccHHHHHHHHHccccEEEEEEEEEccccccccHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHccccccccEEccEEcHHHcEEEccccHHHHHHHHHHHHHHHHHHccccccccEEccccccEEccHHHcccccccccccccEEcccccccHHHHcc
faqfgagcfWGVELAFQRVVGVSKtevgysqgnvpdpnyrlvcsgttnhVEVVRVqfdpqvcpytnllsvfwgrhdpttlnrqggdvgtqyrSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLekgggrgskqsaekgcdepircyg
faqfgagcfwGVELAFQRVVGVSKTEVgysqgnvpdpnyRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHdpttlnrqggdvgtqyRSGIYYYNETQARLARESMEAKqlemkdqrKIVTEILPAKRFYRAEEYHQQYlekgggrgskqsaekgcdepircyg
FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG
***FGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQA******************KIVTEILPAKRFYRAEEYHQ***************************
FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG
FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYL****************DEPIRCYG
FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPI****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYxxxxxxxxxxxxxxxxxxxxxDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query168 2.2.26 [Sep-21-2011]
P54153196 Peptide methionine sulfox N/A no 0.994 0.852 0.821 2e-80
P54152191 Peptide methionine sulfox N/A no 0.994 0.874 0.827 3e-79
Q9FKF7202 Peptide methionine sulfox yes no 0.988 0.821 0.708 4e-68
P54150258 Peptide methionine sulfox no no 0.988 0.643 0.708 6e-67
Q336R9263 Peptide methionine sulfox yes no 0.988 0.631 0.714 6e-66
Q9SEC2259 Peptide methionine sulfox N/A no 0.988 0.640 0.696 2e-65
Q9LY14202 Peptide methionine sulfox no no 0.988 0.821 0.702 4e-65
P54151257 Peptide methionine sulfox N/A no 0.988 0.645 0.690 9e-65
Q9LY15218 Peptide methionine sulfox no no 0.988 0.761 0.648 5e-62
Q7XUP7187 Peptide methionine sulfox no no 0.958 0.860 0.654 5e-60
>sp|P54153|MSRA_SOLLC Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1 Back     alignment and function desciption
 Score =  297 bits (760), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 138/168 (82%), Positives = 150/168 (89%), Gaps = 1/168 (0%)

Query: 1   FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQ 60
           FAQF AGCFWGVELAFQRV GV KTEVGYSQGNV DPNY+L+CSGTT H E +R+QFDP 
Sbjct: 30  FAQFAAGCFWGVELAFQRVGGVVKTEVGYSQGNVHDPNYKLICSGTTEHAEAIRIQFDPN 89

Query: 61  VCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ 120
           VCPY+NLLS+FW RHDPTTLNRQG DVG QYRSGIYYYN+ QA+LARES+EAKQ E  D 
Sbjct: 90  VCPYSNLLSLFWSRHDPTTLNRQGNDVGKQYRSGIYYYNDAQAQLARESLEAKQKEFMD- 148

Query: 121 RKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 168
           +KIVTEILPAKRFYRAEEYHQQYLEKGGGRG KQSA KGC++PIRCYG
Sbjct: 149 KKIVTEILPAKRFYRAEEYHQQYLEKGGGRGCKQSAAKGCNDPIRCYG 196




Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
Solanum lycopersicum (taxid: 4081)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: 1EC: 1
>sp|P54152|MSRA_FRAAN Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2 Back     alignment and function description
>sp|Q9FKF7|MSRA1_ARATH Peptide methionine sulfoxide reductase A1 OS=Arabidopsis thaliana GN=MSRA1 PE=2 SV=1 Back     alignment and function description
>sp|P54150|MSRA4_ARATH Peptide methionine sulfoxide reductase A4, chloroplastic OS=Arabidopsis thaliana GN=MSR4 PE=1 SV=2 Back     alignment and function description
>sp|Q336R9|MSRA4_ORYSJ Peptide methionine sulfoxide reductase A4, chloroplastic OS=Oryza sativa subsp. japonica GN=MSRA4 PE=2 SV=2 Back     alignment and function description
>sp|Q9SEC2|MSRA_LACSA Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1 Back     alignment and function description
>sp|Q9LY14|MSRA3_ARATH Peptide methionine sulfoxide reductase A3 OS=Arabidopsis thaliana GN=MSRA3 PE=1 SV=1 Back     alignment and function description
>sp|P54151|MSRA_BRANA Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1 Back     alignment and function description
>sp|Q9LY15|MSRA2_ARATH Peptide methionine sulfoxide reductase A2 OS=Arabidopsis thaliana GN=MRSA2 PE=1 SV=1 Back     alignment and function description
>sp|Q7XUP7|MSR21_ORYSJ Peptide methionine sulfoxide reductase A2-1 OS=Oryza sativa subsp. japonica GN=MSRA2-1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query168
372864100194 methionine sulfoxide reductase [Morus al 0.994 0.860 0.875 1e-83
224135997179 methionine sulfoxide reductase type [Pop 0.994 0.932 0.857 9e-82
224121866179 methionine sulfoxide reductase type [Pop 0.994 0.932 0.851 5e-81
225456818190 PREDICTED: peptide methionine sulfoxide 0.994 0.878 0.839 1e-80
42795443190 methionine sulfoxide reductase A [Populu 0.994 0.878 0.845 2e-80
1709692196 RecName: Full=Peptide methionine sulfoxi 0.994 0.852 0.821 1e-78
351720861194 uncharacterized protein LOC100527085 [Gl 0.988 0.855 0.803 2e-78
44889030191 RecName: Full=Peptide methionine sulfoxi 0.994 0.874 0.827 2e-77
352856148199 methionine sulfoxide reducatase [Solanum 0.994 0.839 0.809 1e-76
11342533191 methionine sulfoxide reductase [Fragaria 0.994 0.874 0.821 2e-76
>gi|372864100|gb|AEX99755.1| methionine sulfoxide reductase [Morus alba var. multicaulis] Back     alignment and taxonomy information
 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 147/168 (87%), Positives = 159/168 (94%), Gaps = 1/168 (0%)

Query: 1   FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQ 60
            AQFGAGCFWGVEL FQRVVGV KTEVGYSQG+ PDPNY+LVCSG+TNHVEV+RV+FDP+
Sbjct: 28  LAQFGAGCFWGVELTFQRVVGVVKTEVGYSQGHAPDPNYKLVCSGSTNHVEVIRVEFDPK 87

Query: 61  VCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ 120
           VCPYT+LLSVFWGRHDPTTLNRQGGDVG QYRSGIYYYNETQARLA+ES EAKQLE+KD 
Sbjct: 88  VCPYTHLLSVFWGRHDPTTLNRQGGDVGAQYRSGIYYYNETQARLAQESKEAKQLELKD- 146

Query: 121 RKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 168
           +KIVTEILPAKRFYRAEEYHQQYLEKGGG+G KQSAEKGC +PIRCYG
Sbjct: 147 KKIVTEILPAKRFYRAEEYHQQYLEKGGGQGRKQSAEKGCTDPIRCYG 194




Source: Morus alba var. multicaulis

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135997|ref|XP_002322213.1| methionine sulfoxide reductase type [Populus trichocarpa] gi|222869209|gb|EEF06340.1| methionine sulfoxide reductase type [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224121866|ref|XP_002318692.1| methionine sulfoxide reductase type [Populus trichocarpa] gi|222859365|gb|EEE96912.1| methionine sulfoxide reductase type [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225456818|ref|XP_002278258.1| PREDICTED: peptide methionine sulfoxide reductase isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|42795443|gb|AAS46231.1| methionine sulfoxide reductase A [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|1709692|sp|P54153.1|MSRA_SOLLC RecName: Full=Peptide methionine sulfoxide reductase; AltName: Full=Fruit-ripening protein E4; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase; AltName: Full=Protein-methionine-S-oxide reductase gi|7580480|gb|AAB23481.2| fruit-ripening gene [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|351720861|ref|NP_001238470.1| uncharacterized protein LOC100527085 [Glycine max] gi|255631520|gb|ACU16127.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|44889030|sp|P54152.2|MSRA_FRAAN RecName: Full=Peptide methionine sulfoxide reductase; AltName: Full=Fruit-ripening protein E4; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase; AltName: Full=Protein-methionine-S-oxide reductase gi|31455408|emb|CAA93442.2| methionine sulfoxide reductase [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|352856148|gb|AEQ62798.1| methionine sulfoxide reducatase [Solanum melongena] Back     alignment and taxonomy information
>gi|11342533|emb|CAC17011.1| methionine sulfoxide reductase [Fragaria x ananassa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query168
TAIR|locus:2151646202 PMSR1 "AT5G61640" [Arabidopsis 0.988 0.821 0.708 8.5e-65
TAIR|locus:2117313258 PMSR4 "AT4G25130" [Arabidopsis 0.988 0.643 0.720 9.7e-64
UNIPROTKB|Q336R9263 MSRA4 "Peptide methionine sulf 0.988 0.631 0.720 1.1e-62
TAIR|locus:2183419202 PMSR3 "AT5G07470" [Arabidopsis 0.988 0.821 0.702 3e-62
TAIR|locus:2183409218 PMSR2 "AT5G07460" [Arabidopsis 0.988 0.761 0.648 6.6e-58
DICTYBASE|DDB_G0276579147 msrA "peptide methionine sulfo 0.839 0.959 0.615 9.3e-43
TIGR_CMR|GSU_3161162 GSU_3161 "peptide methionine s 0.892 0.925 0.576 1.1e-39
UNIPROTKB|Q9KP30212 msrA "Peptide methionine sulfo 0.845 0.669 0.555 2.1e-36
TIGR_CMR|VC_2549212 VC_2549 "peptide methionine su 0.845 0.669 0.555 2.1e-36
TIGR_CMR|DET_1241176 DET_1241 "peptide methionine s 0.845 0.806 0.5 1.5e-35
TAIR|locus:2151646 PMSR1 "AT5G61640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 119/168 (70%), Positives = 140/168 (83%)

Query:     1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQ 60
             F QFGAGCFW VELA+QRV GV++TEVGYSQG   DP+Y+ VCSGTTNH E+VRVQ+DP+
Sbjct:    37 FTQFGAGCFWSVELAYQRVPGVTQTEVGYSQGITHDPSYKDVCSGTTNHAEIVRVQYDPK 96

Query:    61 VCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ 120
              C Y +LL +FW +HDPTTLNRQG DVGTQYRSGIY+YN  Q +LARES+E  Q ++   
Sbjct:    97 ECSYQSLLDLFWSKHDPTTLNRQGNDVGTQYRSGIYFYNPEQEKLARESLERHQQQV--D 154

Query:   121 RKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 168
             RK+VTEILPAK+FYRAEE+HQQYL KGG  G KQS EKGC++PIRCYG
Sbjct:   155 RKVVTEILPAKKFYRAEEHHQQYLSKGGRFGLKQSTEKGCNDPIRCYG 202




GO:0006464 "cellular protein modification process" evidence=ISS
GO:0006979 "response to oxidative stress" evidence=NAS
GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IEA
GO:0019538 "protein metabolic process" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005829 "cytosol" evidence=ISS
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2117313 PMSR4 "AT4G25130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q336R9 MSRA4 "Peptide methionine sulfoxide reductase A4, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2183419 PMSR3 "AT5G07470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183409 PMSR2 "AT5G07460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276579 msrA "peptide methionine sulfoxide reductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3161 GSU_3161 "peptide methionine sulfoxide reductase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KP30 msrA "Peptide methionine sulfoxide reductase MsrA" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2549 VC_2549 "peptide methionine sulfoxide reductase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1241 DET_1241 "peptide methionine sulfoxide reductase MsrA" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A4FYX5MSRA_METM51, ., 8, ., 4, ., 1, 10.48270.85110.9108yesno
C3LRL2MSRA_VIBCM1, ., 8, ., 4, ., 1, 10.55170.85110.6745yesno
A6VFD6MSRA_METM71, ., 8, ., 4, ., 1, 10.51030.85110.9108yesno
Q9KP30MSRA_VIBCH1, ., 8, ., 4, ., 1, 10.55170.85110.6745yesno
A9AB97MSRA_METM61, ., 8, ., 4, ., 1, 10.48270.85110.9108yesno
Q39Z11MSRA_GEOMG1, ., 8, ., 4, ., 1, 10.54050.88090.9135yesno
Q747V4MSRA_GEOSL1, ., 8, ., 4, ., 1, 10.57430.88090.9135yesno
A5F587MSRA_VIBC31, ., 8, ., 4, ., 1, 10.55170.85110.6745yesno
Q9FKF7MSRA1_ARATH1, ., 8, ., 4, ., 1, 10.70830.98800.8217yesno
Q97Y45MSRA_SULSO1, ., 8, ., 4, ., 1, 10.48270.85110.8079yesno
Q8DE84MSRA_VIBVU1, ., 8, ., 4, ., 1, 10.53790.85110.6842yesno
B0VL72MSRA_ACIBS1, ., 8, ., 4, ., 1, 10.50660.8750.8448yesno
B7K079MSRA_CYAP81, ., 8, ., 4, ., 1, 10.53060.86300.6682yesno
Q9RTB6MSRA_DEIRA1, ., 8, ., 4, ., 1, 10.50660.89280.7281yesno
C1F1B8MSRA_ACIC51, ., 8, ., 4, ., 1, 10.49650.8750.9423yesno
P54153MSRA_SOLLC1, ., 8, ., 4, ., 1, 10.82140.99400.8520N/Ano
P54152MSRA_FRAAN1, ., 8, ., 4, ., 1, 10.82730.99400.8743N/Ano
Q8YXZ4MSRA1_NOSS11, ., 8, ., 4, ., 1, 10.53020.88690.9141yesno
Q8PUD6MSRA_METMA1, ., 8, ., 4, ., 1, 10.51700.8750.6966yesno
C6DDM6MSRA_PECCP1, ., 8, ., 4, ., 1, 10.52020.86300.6839yesno
B7H0P7MSRA_ACIB31, ., 8, ., 4, ., 1, 10.50660.8750.8497yesno
A3M1W6MSRA_ACIBT1, ., 8, ., 4, ., 1, 10.50.8750.8497yesno
Q8TQV6MSRA_METAC1, ., 8, ., 4, ., 1, 10.56460.8750.7819yesno
Q9LY14MSRA3_ARATH1, ., 8, ., 4, ., 1, 10.70230.98800.8217nono
B0V4P7MSRA_ACIBY1, ., 8, ., 4, ., 1, 10.50660.8750.8497yesno
Q9CN40MSRA_PASMU1, ., 8, ., 4, ., 1, 10.50340.83920.8103yesno
Q4J9L3MSRA_SULAC1, ., 8, ., 4, ., 1, 10.49650.85110.8125yesno
B7I4T7MSRA_ACIB51, ., 8, ., 4, ., 1, 10.50660.8750.8497yesno
Q336R9MSRA4_ORYSJ1, ., 8, ., 4, ., 1, 10.71420.98800.6311yesno
B2I399MSRA_ACIBC1, ., 8, ., 4, ., 1, 10.50660.8750.8497yesno
O26635MSRA_METTH1, ., 8, ., 4, ., 1, 10.57710.88690.8816yesno
A8G8X6MSRA_SERP51, ., 8, ., 4, ., 1, 10.54050.86300.6807yesno
Q551H3MSRA_DICDI1, ., 8, ., 4, ., 1, 10.61530.83920.9591yesno
A3CUG3MSRA_METMJ1, ., 8, ., 4, ., 1, 10.56080.88090.9024yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.8.40.691
4th Layer1.8.4.110.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query168
COG0225174 COG0225, MsrA, Peptide methionine sulfoxide reduct 2e-79
PRK14054172 PRK14054, PRK14054, methionine sulfoxide reductase 6e-76
pfam01625147 pfam01625, PMSR, Peptide methionine sulfoxide redu 1e-73
PRK05550283 PRK05550, PRK05550, bifunctional methionine sulfox 7e-69
TIGR00401149 TIGR00401, msrA, methionine-S-sulfoxide reductase 5e-68
PRK00058213 PRK00058, PRK00058, methionine sulfoxide reductase 7e-66
PRK13014186 PRK13014, PRK13014, methionine sulfoxide reductase 2e-65
PRK14018 521 PRK14018, PRK14018, trifunctional thioredoxin/meth 1e-38
PRK05528156 PRK05528, PRK05528, methionine sulfoxide reductase 2e-24
>gnl|CDD|223303 COG0225, MsrA, Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
 Score =  232 bits (595), Expect = 2e-79
 Identities = 82/145 (56%), Positives = 97/145 (66%)

Query: 2   AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQV 61
           A F  GCFWGVE  F+++ GV  T  GY+ G+ P+P Y  VCSGTT H E V V +DP+V
Sbjct: 9   AYFAGGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKV 68

Query: 62  CPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQR 121
             Y  LL VF+  HDPT+LNRQG D GTQYRS IYY NE Q  +A  S+E  Q     ++
Sbjct: 69  ISYEELLEVFFEIHDPTSLNRQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKK 128

Query: 122 KIVTEILPAKRFYRAEEYHQQYLEK 146
            IVTEI PAK FY AEEYHQ YL+K
Sbjct: 129 PIVTEIEPAKNFYPAEEYHQDYLKK 153


Length = 174

>gnl|CDD|237597 PRK14054, PRK14054, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|216614 pfam01625, PMSR, Peptide methionine sulfoxide reductase Back     alignment and domain information
>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional Back     alignment and domain information
>gnl|CDD|129496 TIGR00401, msrA, methionine-S-sulfoxide reductase Back     alignment and domain information
>gnl|CDD|234604 PRK00058, PRK00058, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|237269 PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional Back     alignment and domain information
>gnl|CDD|235497 PRK05528, PRK05528, methionine sulfoxide reductase A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 168
COG0225174 MsrA Peptide methionine sulfoxide reductase [Postt 100.0
KOG1635191 consensus Peptide methionine sulfoxide reductase [ 100.0
TIGR00401149 msrA methionine-S-sulfoxide reductase. This model 100.0
PRK14054172 methionine sulfoxide reductase A; Provisional 100.0
PRK13014186 methionine sulfoxide reductase A; Provisional 100.0
PRK00058213 methionine sulfoxide reductase A; Provisional 100.0
PF01625155 PMSR: Peptide methionine sulfoxide reductase; Inte 100.0
PRK05528156 methionine sulfoxide reductase A; Provisional 100.0
PRK05550283 bifunctional methionine sulfoxide reductase B/A pr 100.0
PRK14018 521 trifunctional thioredoxin/methionine sulfoxide red 100.0
PF0040362 HMA: Heavy-metal-associated domain; InterPro: IPR0 95.63
COG260871 CopZ Copper chaperone [Inorganic ion transport and 89.3
PF02682202 AHS1: Allophanate hydrolase subunit 1; InterPro: I 81.27
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
Probab=100.00  E-value=3.1e-77  Score=478.06  Aligned_cols=153  Identities=54%  Similarity=0.878  Sum_probs=147.3

Q ss_pred             CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991            1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL   80 (168)
Q Consensus         1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~   80 (168)
                      .|+||||||||+|+.|+++|||++|+|||+||+++||||++||+|.|||+|+|+|+|||++|||++||++||++||||++
T Consensus         8 ~a~fagGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~ihDPT~~   87 (174)
T COG0225           8 KAYFAGGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEIHDPTSL   87 (174)
T ss_pred             EEEEeccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHheecCCCCC
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCcccChhHHHHHHHhCCCCCCc
Q 036991           81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSK  153 (168)
Q Consensus        81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~~~~  153 (168)
                      ||||||+|+||||+||++|++|+++|++++++++++-..+++|+|||+|+++||+||||||+||+|||+.+|-
T Consensus        88 nrQGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI~p~~~Fy~AEeYHQ~Yl~KNP~gY~~  160 (174)
T COG0225          88 NRQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEIEPAKNFYPAEEYHQDYLKKNPNGYCH  160 (174)
T ss_pred             CccCCcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEeeccccCcccHHHHHHHHHhCCCCcee
Confidence            9999999999999999999999999999999998843336799999999999999999999999999988775



>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00401 msrA methionine-S-sulfoxide reductase Back     alignment and domain information
>PRK14054 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PRK13014 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PRK00058 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine [] Back     alignment and domain information
>PRK05528 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional Back     alignment and domain information
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional Back     alignment and domain information
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures Back     alignment and domain information
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query168
2j89_A261 Functional And Structural Aspects Of Poplar Cytosol 8e-67
2gt3_A212 Solution Structure And Dynamics Of The Reduced Form 1e-36
2iem_A211 Solution Structure Of An Oxidized Form (Cys51-Cys19 1e-35
1ff3_A211 Structure Of The Peptide Methionine Sulfoxide Reduc 2e-35
1fvg_A199 Crystal Structure Of Bovine Peptide Methionine Sulf 3e-32
1fva_A217 Crystal Structure Of Bovine Methionine Sulfoxide Re 5e-32
2l90_A212 Solution Structure Of Murine Myristoylated Msra Len 7e-31
1nwa_A203 Structure Of Mycobacterium Tuberculosis Methionine 9e-29
4gwb_A168 Crystal Structure Of Putative Peptide Methionine Su 2e-28
3bqe_A194 Structure Of The Central Domain (Msra) Of Neisseria 2e-28
3bqh_A193 Structure Of The Central Domain (Msra) Of Neisseria 3e-28
3bqg_A194 Structure Of The Central Domain (msra) Of Neisseria 1e-27
3bqf_A194 Structure Of The Central Domain (Msra) Of Neisseria 2e-27
3pim_A187 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 4e-23
3pil_A184 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 4e-23
3e0m_A 313 Crystal Structure Of Fusion Protein Of Msra And Msr 3e-22
3pin_B183 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 1e-21
>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And Plastidial Type A Methionine Sulfoxide Reductases Length = 261 Back     alignment and structure

Iteration: 1

Score = 248 bits (634), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 119/168 (70%), Positives = 136/168 (80%), Gaps = 2/168 (1%) Query: 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQ 60 FAQFGAGCFWGVELAFQRV GV+KTEVGY+QG + +P Y V +GTTNH EVVRVQ+DP+ Sbjct: 96 FAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVXTGTTNHNEVVRVQYDPK 155 Query: 61 VCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ 120 C + L+ V W RHDPTTLNRQG DVGTQYRSGIYYY Q + A+ES+E +Q + Sbjct: 156 ECSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKLLN-- 213 Query: 121 RKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 168 RKIVTEILPAK+FYRAEEYHQQYL KGG G QSAEKGC++PIRCYG Sbjct: 214 RKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFMQSAEKGCNDPIRCYG 261
>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of Methionine Sulfoxide Reductase A From Escherichia Coli, A 23 Kda Protein Length = 212 Back     alignment and structure
>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of E. Coli Methionine Sulfoxide Reductase A (Msra) Length = 211 Back     alignment and structure
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase From Escherichia Coli Length = 211 Back     alignment and structure
>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide Reductase Length = 199 Back     alignment and structure
>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase Length = 217 Back     alignment and structure
>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra Length = 212 Back     alignment and structure
>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine Sulfoxide Reductase A In Complex With Protein-Bound Methionine Length = 203 Back     alignment and structure
>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide Reductase From Sinorhizobium Meliloti 1021 Length = 168 Back     alignment and structure
>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Reduced Form) Length = 194 Back     alignment and structure
>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Oxidized Form) Length = 193 Back     alignment and structure
>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria Meningitidis Pilb (sulfenic Acid Form) Length = 194 Back     alignment and structure
>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Complex With A Substrate) Length = 194 Back     alignment and structure
>pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Unusual Oxidized Form Length = 187 Back     alignment and structure
>pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Reduced Form Length = 184 Back     alignment and structure
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb Length = 313 Back     alignment and structure
>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 183 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query168
2j89_A261 Methionine sulfoxide reductase A; MSRA, poplar, ox 1e-103
1fvg_A199 Peptide methionine sulfoxide reductase; oxidoreduc 1e-88
1ff3_A211 Peptide methionine sulfoxide reductase; alpha beta 4e-86
3bqh_A193 PILB, peptide methionine sulfoxide reductase MSRA/ 1e-84
3pim_A187 Peptide methionine sulfoxide reductase; methionine 7e-82
1nwa_A203 Peptide methionine sulfoxide reductase MSRA; oxido 4e-77
3e0m_A 313 Peptide methionine sulfoxide reductase MSRA/MSRB 1 2e-72
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} Length = 261 Back     alignment and structure
 Score =  294 bits (755), Expect = e-103
 Identities = 118/167 (70%), Positives = 135/167 (80%), Gaps = 2/167 (1%)

Query: 2   AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQV 61
           AQFGAGCFWGVELAFQRV GV+KTEVGY+QG + +P Y  VC+GTTNH EVVRVQ+DP+ 
Sbjct: 97  AQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVCTGTTNHNEVVRVQYDPKE 156

Query: 62  CPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQR 121
           C +  L+ V W RHDPTTLNRQG DVGTQYRSGIYYY   Q + A+ES+E +Q  +    
Sbjct: 157 CSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKLLNR-- 214

Query: 122 KIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 168
           KIVTEILPAK+FYRAEEYHQQYL KGG  G  QSAEKGC++PIRCYG
Sbjct: 215 KIVTEILPAKKFYRAEEYHQQYLAKGGRFGFMQSAEKGCNDPIRCYG 261


>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* Length = 199 Back     alignment and structure
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A Length = 211 Back     alignment and structure
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A Length = 193 Back     alignment and structure
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B Length = 187 Back     alignment and structure
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 Length = 203 Back     alignment and structure
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Length = 313 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query168
2j89_A261 Methionine sulfoxide reductase A; MSRA, poplar, ox 100.0
3bqh_A193 PILB, peptide methionine sulfoxide reductase MSRA/ 100.0
1fvg_A199 Peptide methionine sulfoxide reductase; oxidoreduc 100.0
3pim_A187 Peptide methionine sulfoxide reductase; methionine 100.0
1ff3_A211 Peptide methionine sulfoxide reductase; alpha beta 100.0
4gwb_A168 Peptide methionine sulfoxide reductase MSRA 3; str 100.0
1nwa_A203 Peptide methionine sulfoxide reductase MSRA; oxido 100.0
3e0m_A 313 Peptide methionine sulfoxide reductase MSRA/MSRB 1 100.0
3dxs_X74 Copper-transporting ATPase RAN1; CXXC motif, ferre 96.34
1cpz_A68 Protein (COPZ); copper chaperone, metal transport, 95.74
1p6t_A151 Potential copper-transporting ATPase; COPA, P-type 95.64
1osd_A72 MERP, hypothetical protein MERP; mercury resistanc 95.63
2l3m_A71 Copper-ION-binding protein; structural genomics, c 95.54
2ldi_A71 Zinc-transporting ATPase; metal homeostasis, metal 95.28
2qif_A69 Copper chaperone COPZ; tetranuclear Cu(I) cluster; 95.18
1opz_A76 Potential copper-transporting ATPase; mutation, fo 95.14
2g9o_A90 Copper-transporting ATPase 1; menkes disease, solu 95.11
3cjk_B75 Copper-transporting ATPase 1; HAH1, ATP7B, menkes 95.05
1q8l_A84 Copper-transporting ATPase 1; metal binding protei 95.03
2ofg_X111 Zinc-transporting ATPase; ferredoxin-like fold, be 94.97
1yjr_A75 Copper-transporting ATPase 1; metallochaperone, pr 94.96
1kvi_A79 Copper-transporting ATPase 1; menkes, Cu-protein, 94.91
1y3j_A77 Copper-transporting ATPase 1; ferrodoxin-like fold 94.87
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 94.76
1aw0_A72 Menkes copper-transporting ATPase; copper-binding 94.62
4a4j_A69 Pacszia, cation-transporting ATPase PACS; hydrolas 94.49
2xmw_A71 PACS-N, cation-transporting ATPase PACS; hydrolase 94.39
1yg0_A66 COP associated protein; open-faced beta-sandwich, 94.01
2kt2_A69 Mercuric reductase; nmera, MERA, HMA domain, mercu 93.93
1jww_A80 Potential copper-transporting ATPase; beta-alpha-b 93.05
2kkh_A95 Putative heavy metal transporter; zinc transport, 92.67
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 92.43
1mwy_A73 ZNTA; open-faced beta-sandwich fold, beta-alpha-be 91.39
1fvq_A72 Copper-transporting ATPase; APO-CCC2A, hydrolase; 91.14
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 90.69
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 88.94
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 87.01
2kwa_A101 Kinase A inhibitor; bacterial signal transduction, 84.04
3iwl_A68 Copper transport protein ATOX1; beta-alpha-beta-BE 82.42
3fry_A73 Probable copper-exporting P-type ATPase A; transpo 81.89
1cc8_A73 Protein (metallochaperone ATX1); copper transport, 81.03
2phc_B225 Uncharacterized protein PH0987; structural genomic 80.07
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} Back     alignment and structure
Probab=100.00  E-value=1.5e-79  Score=515.82  Aligned_cols=166  Identities=72%  Similarity=1.254  Sum_probs=163.6

Q ss_pred             CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991            1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL   80 (168)
Q Consensus         1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~   80 (168)
                      +|+||||||||+|+.|++++||++|+|||+||.++||||++||+|+|||+|||+|+|||++|||++||++||++||||+.
T Consensus        96 ~a~fAgGCFWgvE~~F~~l~GV~~t~vGYaGG~t~nPTYeeVcsG~TGHaEaV~V~YDP~~ISy~~LL~~Fw~~hDPT~~  175 (261)
T 2j89_A           96 FAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVCTGTTNHNEVVRVQYDPKECSFDTLIDVLWARHDPTTL  175 (261)
T ss_dssp             EEEEEESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHTTCSCCEEEEEEEECTTTSCHHHHHHHHHHHSCTTST
T ss_pred             EEEEecCCeeeeHHHHhhCCCeEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHhcCCccc
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCcccChhHHHHHHHhCCCCCCccccccCC
Q 036991           81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGC  160 (168)
Q Consensus        81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~~~~~~~~~~~  160 (168)
                      ||||+|+|+||||+|||+|++|+++|+++++++++.+  +++|+|||+|+.+||+||+|||+||+|||+++..|+++|+|
T Consensus       176 nrQG~D~GtQYRSaIfy~~eeQ~~~Ae~s~~~~q~~~--~~~IvTEI~p~~~Fy~AEdYHQ~Yl~Kn~~~gy~qsa~kgC  253 (261)
T 2j89_A          176 NRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKLL--NRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFMQSAEKGC  253 (261)
T ss_dssp             TEETTEESGGGCEEEEESSHHHHHHHHHHHHHHHTTC--SSCCCCEEEECCCEEECCGGGTTTTTTTTTTSCCCCCCTTC
T ss_pred             CCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHhc--CCCcEEEEecCCCeeECHHHHHHHHHHCCCCCCcccccccC
Confidence            9999999999999999999999999999999999988  78999999999999999999999999999999999999999


Q ss_pred             CCCceeeC
Q 036991          161 DEPIRCYG  168 (168)
Q Consensus       161 ~~~~~~~~  168 (168)
                      .++|||||
T Consensus       254 ~~~ir~~g  261 (261)
T 2j89_A          254 NDPIRCYG  261 (261)
T ss_dssp             CSCCCSCC
T ss_pred             CCchhhcC
Confidence            99999998



>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A Back     alignment and structure
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* Back     alignment and structure
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B Back     alignment and structure
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A Back     alignment and structure
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti} Back     alignment and structure
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 Back     alignment and structure
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Back     alignment and structure
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0 Back     alignment and structure
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1 Back     alignment and structure
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Back     alignment and structure
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Back     alignment and structure
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Back     alignment and structure
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Back     alignment and structure
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Back     alignment and structure
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A Back     alignment and structure
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A Back     alignment and structure
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Back     alignment and structure
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A Back     alignment and structure
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A Back     alignment and structure
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Back     alignment and structure
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A Back     alignment and structure
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A Back     alignment and structure
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Back     alignment and structure
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Back     alignment and structure
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Back     alignment and structure
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A Back     alignment and structure
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A Back     alignment and structure
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>2kwa_A Kinase A inhibitor; bacterial signal transduction, KIPI, histidine kinase inhibi bacillus subtilis, transferase inhibitor; NMR {Bacillus subtilis} Back     alignment and structure
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Back     alignment and structure
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} Back     alignment and structure
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Back     alignment and structure
>2phc_B Uncharacterized protein PH0987; structural genomics, southeas collaboratory for structural genomics, secsg, PSI, protein initiative; 2.29A {Pyrococcus horikoshii} SCOP: b.62.1.4 d.74.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 168
d1ff3a_211 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 1e-44
d1nwaa_168 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 5e-42
d1fvga_192 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 1e-41
>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} Length = 211 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]
 Score =  144 bits (364), Expect = 1e-44
 Identities = 77/148 (52%), Positives = 85/148 (57%), Gaps = 3/148 (2%)

Query: 2   AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQV 61
           A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V
Sbjct: 45  AIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSV 104

Query: 62  CPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQ---LEMK 118
             Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E  Q   L   
Sbjct: 105 ISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAAD 164

Query: 119 DQRKIVTEILPAKRFYRAEEYHQQYLEK 146
           D R I TEI  A  FY AE+ HQQYL K
Sbjct: 165 DDRHITTEIANATPFYYAEDDHQQYLHK 192


>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 168 Back     information, alignment and structure
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} Length = 192 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query168
d1fvga_192 Peptide methionine sulfoxide reductase {Cow (Bos t 100.0
d1ff3a_211 Peptide methionine sulfoxide reductase {Escherichi 100.0
d1nwaa_168 Peptide methionine sulfoxide reductase {Mycobacter 100.0
d1osda_72 Mercuric ion binding protein MerP {Ralstonia metal 97.53
d1cpza_68 Copper chaperone {Enterococcus hirae [TaxId: 1354] 97.38
d1q8la_84 Menkes copper-transporting ATPase {Human (Homo sap 97.31
d2aw0a_72 Menkes copper-transporting ATPase {Human (Homo sap 97.31
d2qifa169 Copper chaperone {Bacillus subtilis, CopZ [TaxId: 97.17
d1p6ta279 Potential copper-translocating P-type ATPase CopA 97.15
d1p6ta172 Potential copper-translocating P-type ATPase CopA 97.14
d1kvja_79 Menkes copper-transporting ATPase {Human (Homo sap 97.05
d2ggpb172 Copper transporter domain ccc2a {Baker's yeast (Sa 96.63
d2phcb284 Uncharacterized protein PH0987 {Pyrococcus horikos 92.9
d1mwza_73 Metal ion-transporting ATPase ZntA, N-terminal dom 92.15
d1qupa272 Copper chaperone for superoxide dismutase, N-termi 90.38
d1sb6a_64 Copper chaperone {Synechocystis sp. pcc 6803, Scat 89.06
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00  E-value=2.7e-72  Score=454.70  Aligned_cols=152  Identities=46%  Similarity=0.774  Sum_probs=144.5

Q ss_pred             CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991            1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL   80 (168)
Q Consensus         1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~   80 (168)
                      +|+||||||||+|+.|++++||++|+|||+||.++||||++||+|.|||+|+|+|+|||++|||++||++||++||||+.
T Consensus        39 ~a~fagGCFWg~E~~f~~~~GV~~t~vGY~GG~~~nPtY~~Vc~g~TgH~E~V~V~yDp~~isy~~LL~~F~~~hDPT~~  118 (192)
T d1fvga_          39 MAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWENHDPTQG  118 (192)
T ss_dssp             EEEEEESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHHHTSCTTCS
T ss_pred             EEEEEecccccceeeeeecCCeEEEEeeeccCCCCCCCcceeecCCCCCeeEEEEEEecccCCHHHHHHHHHhhcccccc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhcc--CCCceEEEEecCCCcccChhHHHHHHHhCCCCCC
Q 036991           81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMK--DQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGS  152 (168)
Q Consensus        81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~--~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~~~  152 (168)
                      ||||+|+|+||||+||++|++|+++|+++++++++.+.  ..++|+|+|+|+.+||+||+|||+||+|||+.+|
T Consensus       119 n~Qg~D~G~QYRSaIf~~~~~q~~~a~~~~~~~~~~~~~~~~~~I~TeI~~~~~Fy~AEeyHQ~Yl~knP~~YC  192 (192)
T d1fvga_         119 MRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLITTDIREGQTFYYAEDYHQQYLSKDPDGYC  192 (192)
T ss_dssp             SEETTEESGGGCEEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCCEECSSCCCEECCGGGTTHHHHSTTCCC
T ss_pred             cceecccCccccceeehhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeecCCCEeECHHHHHHHHHHCCCCCC
Confidence            99999999999999999999999999999998876432  1478999999999999999999999999997654



>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Back     information, alignment and structure
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Back     information, alignment and structure
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Back     information, alignment and structure
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2phcb2 d.74.5.1 (B:2-85) Uncharacterized protein PH0987 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Back     information, alignment and structure