Citrus Sinensis ID: 036991
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 168 | ||||||
| 372864100 | 194 | methionine sulfoxide reductase [Morus al | 0.994 | 0.860 | 0.875 | 1e-83 | |
| 224135997 | 179 | methionine sulfoxide reductase type [Pop | 0.994 | 0.932 | 0.857 | 9e-82 | |
| 224121866 | 179 | methionine sulfoxide reductase type [Pop | 0.994 | 0.932 | 0.851 | 5e-81 | |
| 225456818 | 190 | PREDICTED: peptide methionine sulfoxide | 0.994 | 0.878 | 0.839 | 1e-80 | |
| 42795443 | 190 | methionine sulfoxide reductase A [Populu | 0.994 | 0.878 | 0.845 | 2e-80 | |
| 1709692 | 196 | RecName: Full=Peptide methionine sulfoxi | 0.994 | 0.852 | 0.821 | 1e-78 | |
| 351720861 | 194 | uncharacterized protein LOC100527085 [Gl | 0.988 | 0.855 | 0.803 | 2e-78 | |
| 44889030 | 191 | RecName: Full=Peptide methionine sulfoxi | 0.994 | 0.874 | 0.827 | 2e-77 | |
| 352856148 | 199 | methionine sulfoxide reducatase [Solanum | 0.994 | 0.839 | 0.809 | 1e-76 | |
| 11342533 | 191 | methionine sulfoxide reductase [Fragaria | 0.994 | 0.874 | 0.821 | 2e-76 |
| >gi|372864100|gb|AEX99755.1| methionine sulfoxide reductase [Morus alba var. multicaulis] | Back alignment and taxonomy information |
|---|
Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 147/168 (87%), Positives = 159/168 (94%), Gaps = 1/168 (0%)
Query: 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQ 60
AQFGAGCFWGVEL FQRVVGV KTEVGYSQG+ PDPNY+LVCSG+TNHVEV+RV+FDP+
Sbjct: 28 LAQFGAGCFWGVELTFQRVVGVVKTEVGYSQGHAPDPNYKLVCSGSTNHVEVIRVEFDPK 87
Query: 61 VCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ 120
VCPYT+LLSVFWGRHDPTTLNRQGGDVG QYRSGIYYYNETQARLA+ES EAKQLE+KD
Sbjct: 88 VCPYTHLLSVFWGRHDPTTLNRQGGDVGAQYRSGIYYYNETQARLAQESKEAKQLELKD- 146
Query: 121 RKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 168
+KIVTEILPAKRFYRAEEYHQQYLEKGGG+G KQSAEKGC +PIRCYG
Sbjct: 147 KKIVTEILPAKRFYRAEEYHQQYLEKGGGQGRKQSAEKGCTDPIRCYG 194
|
Source: Morus alba var. multicaulis Species: Morus alba Genus: Morus Family: Moraceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135997|ref|XP_002322213.1| methionine sulfoxide reductase type [Populus trichocarpa] gi|222869209|gb|EEF06340.1| methionine sulfoxide reductase type [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224121866|ref|XP_002318692.1| methionine sulfoxide reductase type [Populus trichocarpa] gi|222859365|gb|EEE96912.1| methionine sulfoxide reductase type [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|225456818|ref|XP_002278258.1| PREDICTED: peptide methionine sulfoxide reductase isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|42795443|gb|AAS46231.1| methionine sulfoxide reductase A [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
| >gi|1709692|sp|P54153.1|MSRA_SOLLC RecName: Full=Peptide methionine sulfoxide reductase; AltName: Full=Fruit-ripening protein E4; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase; AltName: Full=Protein-methionine-S-oxide reductase gi|7580480|gb|AAB23481.2| fruit-ripening gene [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
| >gi|351720861|ref|NP_001238470.1| uncharacterized protein LOC100527085 [Glycine max] gi|255631520|gb|ACU16127.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|44889030|sp|P54152.2|MSRA_FRAAN RecName: Full=Peptide methionine sulfoxide reductase; AltName: Full=Fruit-ripening protein E4; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase; AltName: Full=Protein-methionine-S-oxide reductase gi|31455408|emb|CAA93442.2| methionine sulfoxide reductase [Fragaria x ananassa] | Back alignment and taxonomy information |
|---|
| >gi|352856148|gb|AEQ62798.1| methionine sulfoxide reducatase [Solanum melongena] | Back alignment and taxonomy information |
|---|
| >gi|11342533|emb|CAC17011.1| methionine sulfoxide reductase [Fragaria x ananassa] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 168 | ||||||
| TAIR|locus:2151646 | 202 | PMSR1 "AT5G61640" [Arabidopsis | 0.988 | 0.821 | 0.708 | 8.5e-65 | |
| TAIR|locus:2117313 | 258 | PMSR4 "AT4G25130" [Arabidopsis | 0.988 | 0.643 | 0.720 | 9.7e-64 | |
| UNIPROTKB|Q336R9 | 263 | MSRA4 "Peptide methionine sulf | 0.988 | 0.631 | 0.720 | 1.1e-62 | |
| TAIR|locus:2183419 | 202 | PMSR3 "AT5G07470" [Arabidopsis | 0.988 | 0.821 | 0.702 | 3e-62 | |
| TAIR|locus:2183409 | 218 | PMSR2 "AT5G07460" [Arabidopsis | 0.988 | 0.761 | 0.648 | 6.6e-58 | |
| DICTYBASE|DDB_G0276579 | 147 | msrA "peptide methionine sulfo | 0.839 | 0.959 | 0.615 | 9.3e-43 | |
| TIGR_CMR|GSU_3161 | 162 | GSU_3161 "peptide methionine s | 0.892 | 0.925 | 0.576 | 1.1e-39 | |
| UNIPROTKB|Q9KP30 | 212 | msrA "Peptide methionine sulfo | 0.845 | 0.669 | 0.555 | 2.1e-36 | |
| TIGR_CMR|VC_2549 | 212 | VC_2549 "peptide methionine su | 0.845 | 0.669 | 0.555 | 2.1e-36 | |
| TIGR_CMR|DET_1241 | 176 | DET_1241 "peptide methionine s | 0.845 | 0.806 | 0.5 | 1.5e-35 |
| TAIR|locus:2151646 PMSR1 "AT5G61640" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 119/168 (70%), Positives = 140/168 (83%)
Query: 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQ 60
F QFGAGCFW VELA+QRV GV++TEVGYSQG DP+Y+ VCSGTTNH E+VRVQ+DP+
Sbjct: 37 FTQFGAGCFWSVELAYQRVPGVTQTEVGYSQGITHDPSYKDVCSGTTNHAEIVRVQYDPK 96
Query: 61 VCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ 120
C Y +LL +FW +HDPTTLNRQG DVGTQYRSGIY+YN Q +LARES+E Q ++
Sbjct: 97 ECSYQSLLDLFWSKHDPTTLNRQGNDVGTQYRSGIYFYNPEQEKLARESLERHQQQV--D 154
Query: 121 RKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 168
RK+VTEILPAK+FYRAEE+HQQYL KGG G KQS EKGC++PIRCYG
Sbjct: 155 RKVVTEILPAKKFYRAEEHHQQYLSKGGRFGLKQSTEKGCNDPIRCYG 202
|
|
| TAIR|locus:2117313 PMSR4 "AT4G25130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q336R9 MSRA4 "Peptide methionine sulfoxide reductase A4, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2183419 PMSR3 "AT5G07470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2183409 PMSR2 "AT5G07460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0276579 msrA "peptide methionine sulfoxide reductase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|GSU_3161 GSU_3161 "peptide methionine sulfoxide reductase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KP30 msrA "Peptide methionine sulfoxide reductase MsrA" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|VC_2549 VC_2549 "peptide methionine sulfoxide reductase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|DET_1241 DET_1241 "peptide methionine sulfoxide reductase MsrA" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 168 | |||
| COG0225 | 174 | COG0225, MsrA, Peptide methionine sulfoxide reduct | 2e-79 | |
| PRK14054 | 172 | PRK14054, PRK14054, methionine sulfoxide reductase | 6e-76 | |
| pfam01625 | 147 | pfam01625, PMSR, Peptide methionine sulfoxide redu | 1e-73 | |
| PRK05550 | 283 | PRK05550, PRK05550, bifunctional methionine sulfox | 7e-69 | |
| TIGR00401 | 149 | TIGR00401, msrA, methionine-S-sulfoxide reductase | 5e-68 | |
| PRK00058 | 213 | PRK00058, PRK00058, methionine sulfoxide reductase | 7e-66 | |
| PRK13014 | 186 | PRK13014, PRK13014, methionine sulfoxide reductase | 2e-65 | |
| PRK14018 | 521 | PRK14018, PRK14018, trifunctional thioredoxin/meth | 1e-38 | |
| PRK05528 | 156 | PRK05528, PRK05528, methionine sulfoxide reductase | 2e-24 |
| >gnl|CDD|223303 COG0225, MsrA, Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 2e-79
Identities = 82/145 (56%), Positives = 97/145 (66%)
Query: 2 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQV 61
A F GCFWGVE F+++ GV T GY+ G+ P+P Y VCSGTT H E V V +DP+V
Sbjct: 9 AYFAGGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKV 68
Query: 62 CPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQR 121
Y LL VF+ HDPT+LNRQG D GTQYRS IYY NE Q +A S+E Q ++
Sbjct: 69 ISYEELLEVFFEIHDPTSLNRQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKK 128
Query: 122 KIVTEILPAKRFYRAEEYHQQYLEK 146
IVTEI PAK FY AEEYHQ YL+K
Sbjct: 129 PIVTEIEPAKNFYPAEEYHQDYLKK 153
|
Length = 174 |
| >gnl|CDD|237597 PRK14054, PRK14054, methionine sulfoxide reductase A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216614 pfam01625, PMSR, Peptide methionine sulfoxide reductase | Back alignment and domain information |
|---|
| >gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129496 TIGR00401, msrA, methionine-S-sulfoxide reductase | Back alignment and domain information |
|---|
| >gnl|CDD|234604 PRK00058, PRK00058, methionine sulfoxide reductase A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237269 PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235497 PRK05528, PRK05528, methionine sulfoxide reductase A; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 168 | |||
| COG0225 | 174 | MsrA Peptide methionine sulfoxide reductase [Postt | 100.0 | |
| KOG1635 | 191 | consensus Peptide methionine sulfoxide reductase [ | 100.0 | |
| TIGR00401 | 149 | msrA methionine-S-sulfoxide reductase. This model | 100.0 | |
| PRK14054 | 172 | methionine sulfoxide reductase A; Provisional | 100.0 | |
| PRK13014 | 186 | methionine sulfoxide reductase A; Provisional | 100.0 | |
| PRK00058 | 213 | methionine sulfoxide reductase A; Provisional | 100.0 | |
| PF01625 | 155 | PMSR: Peptide methionine sulfoxide reductase; Inte | 100.0 | |
| PRK05528 | 156 | methionine sulfoxide reductase A; Provisional | 100.0 | |
| PRK05550 | 283 | bifunctional methionine sulfoxide reductase B/A pr | 100.0 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 100.0 | |
| PF00403 | 62 | HMA: Heavy-metal-associated domain; InterPro: IPR0 | 95.63 | |
| COG2608 | 71 | CopZ Copper chaperone [Inorganic ion transport and | 89.3 | |
| PF02682 | 202 | AHS1: Allophanate hydrolase subunit 1; InterPro: I | 81.27 |
| >COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-77 Score=478.06 Aligned_cols=153 Identities=54% Similarity=0.878 Sum_probs=147.3
Q ss_pred CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL 80 (168)
Q Consensus 1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~ 80 (168)
.|+||||||||+|+.|+++|||++|+|||+||+++||||++||+|.|||+|+|+|+|||++|||++||++||++||||++
T Consensus 8 ~a~fagGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~ihDPT~~ 87 (174)
T COG0225 8 KAYFAGGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEIHDPTSL 87 (174)
T ss_pred EEEEeccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHheecCCCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCcccChhHHHHHHHhCCCCCCc
Q 036991 81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSK 153 (168)
Q Consensus 81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~~~~ 153 (168)
||||||+|+||||+||++|++|+++|++++++++++-..+++|+|||+|+++||+||||||+||+|||+.+|-
T Consensus 88 nrQGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI~p~~~Fy~AEeYHQ~Yl~KNP~gY~~ 160 (174)
T COG0225 88 NRQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEIEPAKNFYPAEEYHQDYLKKNPNGYCH 160 (174)
T ss_pred CccCCcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEeeccccCcccHHHHHHHHHhCCCCcee
Confidence 9999999999999999999999999999999998843336799999999999999999999999999988775
|
|
| >KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00401 msrA methionine-S-sulfoxide reductase | Back alignment and domain information |
|---|
| >PRK14054 methionine sulfoxide reductase A; Provisional | Back alignment and domain information |
|---|
| >PRK13014 methionine sulfoxide reductase A; Provisional | Back alignment and domain information |
|---|
| >PRK00058 methionine sulfoxide reductase A; Provisional | Back alignment and domain information |
|---|
| >PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine [] | Back alignment and domain information |
|---|
| >PRK05528 methionine sulfoxide reductase A; Provisional | Back alignment and domain information |
|---|
| >PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional | Back alignment and domain information |
|---|
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
| >PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures | Back alignment and domain information |
|---|
| >COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 168 | ||||
| 2j89_A | 261 | Functional And Structural Aspects Of Poplar Cytosol | 8e-67 | ||
| 2gt3_A | 212 | Solution Structure And Dynamics Of The Reduced Form | 1e-36 | ||
| 2iem_A | 211 | Solution Structure Of An Oxidized Form (Cys51-Cys19 | 1e-35 | ||
| 1ff3_A | 211 | Structure Of The Peptide Methionine Sulfoxide Reduc | 2e-35 | ||
| 1fvg_A | 199 | Crystal Structure Of Bovine Peptide Methionine Sulf | 3e-32 | ||
| 1fva_A | 217 | Crystal Structure Of Bovine Methionine Sulfoxide Re | 5e-32 | ||
| 2l90_A | 212 | Solution Structure Of Murine Myristoylated Msra Len | 7e-31 | ||
| 1nwa_A | 203 | Structure Of Mycobacterium Tuberculosis Methionine | 9e-29 | ||
| 4gwb_A | 168 | Crystal Structure Of Putative Peptide Methionine Su | 2e-28 | ||
| 3bqe_A | 194 | Structure Of The Central Domain (Msra) Of Neisseria | 2e-28 | ||
| 3bqh_A | 193 | Structure Of The Central Domain (Msra) Of Neisseria | 3e-28 | ||
| 3bqg_A | 194 | Structure Of The Central Domain (msra) Of Neisseria | 1e-27 | ||
| 3bqf_A | 194 | Structure Of The Central Domain (Msra) Of Neisseria | 2e-27 | ||
| 3pim_A | 187 | Crystal Structure Of Mxr1 From Saccharomyces Cerevi | 4e-23 | ||
| 3pil_A | 184 | Crystal Structure Of Mxr1 From Saccharomyces Cerevi | 4e-23 | ||
| 3e0m_A | 313 | Crystal Structure Of Fusion Protein Of Msra And Msr | 3e-22 | ||
| 3pin_B | 183 | Crystal Structure Of Mxr1 From Saccharomyces Cerevi | 1e-21 |
| >pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And Plastidial Type A Methionine Sulfoxide Reductases Length = 261 | Back alignment and structure |
|
| >pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of Methionine Sulfoxide Reductase A From Escherichia Coli, A 23 Kda Protein Length = 212 | Back alignment and structure |
| >pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of E. Coli Methionine Sulfoxide Reductase A (Msra) Length = 211 | Back alignment and structure |
| >pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase From Escherichia Coli Length = 211 | Back alignment and structure |
| >pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide Reductase Length = 199 | Back alignment and structure |
| >pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase Length = 217 | Back alignment and structure |
| >pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra Length = 212 | Back alignment and structure |
| >pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine Sulfoxide Reductase A In Complex With Protein-Bound Methionine Length = 203 | Back alignment and structure |
| >pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide Reductase From Sinorhizobium Meliloti 1021 Length = 168 | Back alignment and structure |
| >pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Reduced Form) Length = 194 | Back alignment and structure |
| >pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Oxidized Form) Length = 193 | Back alignment and structure |
| >pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria Meningitidis Pilb (sulfenic Acid Form) Length = 194 | Back alignment and structure |
| >pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Complex With A Substrate) Length = 194 | Back alignment and structure |
| >pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Unusual Oxidized Form Length = 187 | Back alignment and structure |
| >pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Reduced Form Length = 184 | Back alignment and structure |
| >pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb Length = 313 | Back alignment and structure |
| >pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 183 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 168 | |||
| 2j89_A | 261 | Methionine sulfoxide reductase A; MSRA, poplar, ox | 1e-103 | |
| 1fvg_A | 199 | Peptide methionine sulfoxide reductase; oxidoreduc | 1e-88 | |
| 1ff3_A | 211 | Peptide methionine sulfoxide reductase; alpha beta | 4e-86 | |
| 3bqh_A | 193 | PILB, peptide methionine sulfoxide reductase MSRA/ | 1e-84 | |
| 3pim_A | 187 | Peptide methionine sulfoxide reductase; methionine | 7e-82 | |
| 1nwa_A | 203 | Peptide methionine sulfoxide reductase MSRA; oxido | 4e-77 | |
| 3e0m_A | 313 | Peptide methionine sulfoxide reductase MSRA/MSRB 1 | 2e-72 |
| >2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} Length = 261 | Back alignment and structure |
|---|
Score = 294 bits (755), Expect = e-103
Identities = 118/167 (70%), Positives = 135/167 (80%), Gaps = 2/167 (1%)
Query: 2 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQV 61
AQFGAGCFWGVELAFQRV GV+KTEVGY+QG + +P Y VC+GTTNH EVVRVQ+DP+
Sbjct: 97 AQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVCTGTTNHNEVVRVQYDPKE 156
Query: 62 CPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQR 121
C + L+ V W RHDPTTLNRQG DVGTQYRSGIYYY Q + A+ES+E +Q +
Sbjct: 157 CSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKLLNR-- 214
Query: 122 KIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 168
KIVTEILPAK+FYRAEEYHQQYL KGG G QSAEKGC++PIRCYG
Sbjct: 215 KIVTEILPAKKFYRAEEYHQQYLAKGGRFGFMQSAEKGCNDPIRCYG 261
|
| >1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* Length = 199 | Back alignment and structure |
|---|
| >1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A Length = 211 | Back alignment and structure |
|---|
| >3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A Length = 193 | Back alignment and structure |
|---|
| >3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B Length = 187 | Back alignment and structure |
|---|
| >1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 Length = 203 | Back alignment and structure |
|---|
| >3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Length = 313 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 168 | |||
| 2j89_A | 261 | Methionine sulfoxide reductase A; MSRA, poplar, ox | 100.0 | |
| 3bqh_A | 193 | PILB, peptide methionine sulfoxide reductase MSRA/ | 100.0 | |
| 1fvg_A | 199 | Peptide methionine sulfoxide reductase; oxidoreduc | 100.0 | |
| 3pim_A | 187 | Peptide methionine sulfoxide reductase; methionine | 100.0 | |
| 1ff3_A | 211 | Peptide methionine sulfoxide reductase; alpha beta | 100.0 | |
| 4gwb_A | 168 | Peptide methionine sulfoxide reductase MSRA 3; str | 100.0 | |
| 1nwa_A | 203 | Peptide methionine sulfoxide reductase MSRA; oxido | 100.0 | |
| 3e0m_A | 313 | Peptide methionine sulfoxide reductase MSRA/MSRB 1 | 100.0 | |
| 3dxs_X | 74 | Copper-transporting ATPase RAN1; CXXC motif, ferre | 96.34 | |
| 1cpz_A | 68 | Protein (COPZ); copper chaperone, metal transport, | 95.74 | |
| 1p6t_A | 151 | Potential copper-transporting ATPase; COPA, P-type | 95.64 | |
| 1osd_A | 72 | MERP, hypothetical protein MERP; mercury resistanc | 95.63 | |
| 2l3m_A | 71 | Copper-ION-binding protein; structural genomics, c | 95.54 | |
| 2ldi_A | 71 | Zinc-transporting ATPase; metal homeostasis, metal | 95.28 | |
| 2qif_A | 69 | Copper chaperone COPZ; tetranuclear Cu(I) cluster; | 95.18 | |
| 1opz_A | 76 | Potential copper-transporting ATPase; mutation, fo | 95.14 | |
| 2g9o_A | 90 | Copper-transporting ATPase 1; menkes disease, solu | 95.11 | |
| 3cjk_B | 75 | Copper-transporting ATPase 1; HAH1, ATP7B, menkes | 95.05 | |
| 1q8l_A | 84 | Copper-transporting ATPase 1; metal binding protei | 95.03 | |
| 2ofg_X | 111 | Zinc-transporting ATPase; ferredoxin-like fold, be | 94.97 | |
| 1yjr_A | 75 | Copper-transporting ATPase 1; metallochaperone, pr | 94.96 | |
| 1kvi_A | 79 | Copper-transporting ATPase 1; menkes, Cu-protein, | 94.91 | |
| 1y3j_A | 77 | Copper-transporting ATPase 1; ferrodoxin-like fold | 94.87 | |
| 2ew9_A | 149 | Copper-transporting ATPase 2; copper trafficking, | 94.76 | |
| 1aw0_A | 72 | Menkes copper-transporting ATPase; copper-binding | 94.62 | |
| 4a4j_A | 69 | Pacszia, cation-transporting ATPase PACS; hydrolas | 94.49 | |
| 2xmw_A | 71 | PACS-N, cation-transporting ATPase PACS; hydrolase | 94.39 | |
| 1yg0_A | 66 | COP associated protein; open-faced beta-sandwich, | 94.01 | |
| 2kt2_A | 69 | Mercuric reductase; nmera, MERA, HMA domain, mercu | 93.93 | |
| 1jww_A | 80 | Potential copper-transporting ATPase; beta-alpha-b | 93.05 | |
| 2kkh_A | 95 | Putative heavy metal transporter; zinc transport, | 92.67 | |
| 2rop_A | 202 | Copper-transporting ATPase 2; wilson protein, mobi | 92.43 | |
| 1mwy_A | 73 | ZNTA; open-faced beta-sandwich fold, beta-alpha-be | 91.39 | |
| 1fvq_A | 72 | Copper-transporting ATPase; APO-CCC2A, hydrolase; | 91.14 | |
| 2rop_A | 202 | Copper-transporting ATPase 2; wilson protein, mobi | 90.69 | |
| 2ew9_A | 149 | Copper-transporting ATPase 2; copper trafficking, | 88.94 | |
| 3j09_A | 723 | COPA, copper-exporting P-type ATPase A; copper tra | 87.01 | |
| 2kwa_A | 101 | Kinase A inhibitor; bacterial signal transduction, | 84.04 | |
| 3iwl_A | 68 | Copper transport protein ATOX1; beta-alpha-beta-BE | 82.42 | |
| 3fry_A | 73 | Probable copper-exporting P-type ATPase A; transpo | 81.89 | |
| 1cc8_A | 73 | Protein (metallochaperone ATX1); copper transport, | 81.03 | |
| 2phc_B | 225 | Uncharacterized protein PH0987; structural genomic | 80.07 |
| >2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-79 Score=515.82 Aligned_cols=166 Identities=72% Similarity=1.254 Sum_probs=163.6
Q ss_pred CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL 80 (168)
Q Consensus 1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~ 80 (168)
+|+||||||||+|+.|++++||++|+|||+||.++||||++||+|+|||+|||+|+|||++|||++||++||++||||+.
T Consensus 96 ~a~fAgGCFWgvE~~F~~l~GV~~t~vGYaGG~t~nPTYeeVcsG~TGHaEaV~V~YDP~~ISy~~LL~~Fw~~hDPT~~ 175 (261)
T 2j89_A 96 FAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVCTGTTNHNEVVRVQYDPKECSFDTLIDVLWARHDPTTL 175 (261)
T ss_dssp EEEEEESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHTTCSCCEEEEEEEECTTTSCHHHHHHHHHHHSCTTST
T ss_pred EEEEecCCeeeeHHHHhhCCCeEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHhcCCccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCcccChhHHHHHHHhCCCCCCccccccCC
Q 036991 81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGC 160 (168)
Q Consensus 81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~~~~~~~~~~~ 160 (168)
||||+|+|+||||+|||+|++|+++|+++++++++.+ +++|+|||+|+.+||+||+|||+||+|||+++..|+++|+|
T Consensus 176 nrQG~D~GtQYRSaIfy~~eeQ~~~Ae~s~~~~q~~~--~~~IvTEI~p~~~Fy~AEdYHQ~Yl~Kn~~~gy~qsa~kgC 253 (261)
T 2j89_A 176 NRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKLL--NRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFMQSAEKGC 253 (261)
T ss_dssp TEETTEESGGGCEEEEESSHHHHHHHHHHHHHHHTTC--SSCCCCEEEECCCEEECCGGGTTTTTTTTTTSCCCCCCTTC
T ss_pred CCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHhc--CCCcEEEEecCCCeeECHHHHHHHHHHCCCCCCcccccccC
Confidence 9999999999999999999999999999999999988 78999999999999999999999999999999999999999
Q ss_pred CCCceeeC
Q 036991 161 DEPIRCYG 168 (168)
Q Consensus 161 ~~~~~~~~ 168 (168)
.++|||||
T Consensus 254 ~~~ir~~g 261 (261)
T 2j89_A 254 NDPIRCYG 261 (261)
T ss_dssp CSCCCSCC
T ss_pred CCchhhcC
Confidence 99999998
|
| >3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A | Back alignment and structure |
|---|
| >1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* | Back alignment and structure |
|---|
| >3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B | Back alignment and structure |
|---|
| >1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A | Back alignment and structure |
|---|
| >4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 | Back alignment and structure |
|---|
| >3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0 | Back alignment and structure |
|---|
| >1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1 | Back alignment and structure |
|---|
| >1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A | Back alignment and structure |
|---|
| >1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A | Back alignment and structure |
|---|
| >2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} | Back alignment and structure |
|---|
| >2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} | Back alignment and structure |
|---|
| >2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A | Back alignment and structure |
|---|
| >1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A | Back alignment and structure |
|---|
| >2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A | Back alignment and structure |
|---|
| >3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A | Back alignment and structure |
|---|
| >1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A | Back alignment and structure |
|---|
| >1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A | Back alignment and structure |
|---|
| >1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A | Back alignment and structure |
|---|
| >1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A | Back alignment and structure |
|---|
| >2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A | Back alignment and structure |
|---|
| >4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A | Back alignment and structure |
|---|
| >2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A | Back alignment and structure |
|---|
| >1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} | Back alignment and structure |
|---|
| >2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A | Back alignment and structure |
|---|
| >1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A | Back alignment and structure |
|---|
| >2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A | Back alignment and structure |
|---|
| >1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B | Back alignment and structure |
|---|
| >2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >2kwa_A Kinase A inhibitor; bacterial signal transduction, KIPI, histidine kinase inhibi bacillus subtilis, transferase inhibitor; NMR {Bacillus subtilis} | Back alignment and structure |
|---|
| >3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A | Back alignment and structure |
|---|
| >3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A | Back alignment and structure |
|---|
| >2phc_B Uncharacterized protein PH0987; structural genomics, southeas collaboratory for structural genomics, secsg, PSI, protein initiative; 2.29A {Pyrococcus horikoshii} SCOP: b.62.1.4 d.74.5.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 168 | ||||
| d1ff3a_ | 211 | d.58.28.1 (A:) Peptide methionine sulfoxide reduct | 1e-44 | |
| d1nwaa_ | 168 | d.58.28.1 (A:) Peptide methionine sulfoxide reduct | 5e-42 | |
| d1fvga_ | 192 | d.58.28.1 (A:) Peptide methionine sulfoxide reduct | 1e-41 |
| >d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} Length = 211 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Peptide methionine sulfoxide reductase family: Peptide methionine sulfoxide reductase domain: Peptide methionine sulfoxide reductase species: Escherichia coli [TaxId: 562]
Score = 144 bits (364), Expect = 1e-44
Identities = 77/148 (52%), Positives = 85/148 (57%), Gaps = 3/148 (2%)
Query: 2 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQV 61
A F GCFWGVE F ++ GV T GY+ G P+P YR VCSG T H E VR+ +DP V
Sbjct: 45 AIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSV 104
Query: 62 CPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQ---LEMK 118
Y LL VFW HDP RQG D GTQYRS IY Q AR S+E Q L
Sbjct: 105 ISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAAD 164
Query: 119 DQRKIVTEILPAKRFYRAEEYHQQYLEK 146
D R I TEI A FY AE+ HQQYL K
Sbjct: 165 DDRHITTEIANATPFYYAEDDHQQYLHK 192
|
| >d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 168 | Back information, alignment and structure |
|---|
| >d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} Length = 192 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 168 | |||
| d1fvga_ | 192 | Peptide methionine sulfoxide reductase {Cow (Bos t | 100.0 | |
| d1ff3a_ | 211 | Peptide methionine sulfoxide reductase {Escherichi | 100.0 | |
| d1nwaa_ | 168 | Peptide methionine sulfoxide reductase {Mycobacter | 100.0 | |
| d1osda_ | 72 | Mercuric ion binding protein MerP {Ralstonia metal | 97.53 | |
| d1cpza_ | 68 | Copper chaperone {Enterococcus hirae [TaxId: 1354] | 97.38 | |
| d1q8la_ | 84 | Menkes copper-transporting ATPase {Human (Homo sap | 97.31 | |
| d2aw0a_ | 72 | Menkes copper-transporting ATPase {Human (Homo sap | 97.31 | |
| d2qifa1 | 69 | Copper chaperone {Bacillus subtilis, CopZ [TaxId: | 97.17 | |
| d1p6ta2 | 79 | Potential copper-translocating P-type ATPase CopA | 97.15 | |
| d1p6ta1 | 72 | Potential copper-translocating P-type ATPase CopA | 97.14 | |
| d1kvja_ | 79 | Menkes copper-transporting ATPase {Human (Homo sap | 97.05 | |
| d2ggpb1 | 72 | Copper transporter domain ccc2a {Baker's yeast (Sa | 96.63 | |
| d2phcb2 | 84 | Uncharacterized protein PH0987 {Pyrococcus horikos | 92.9 | |
| d1mwza_ | 73 | Metal ion-transporting ATPase ZntA, N-terminal dom | 92.15 | |
| d1qupa2 | 72 | Copper chaperone for superoxide dismutase, N-termi | 90.38 | |
| d1sb6a_ | 64 | Copper chaperone {Synechocystis sp. pcc 6803, Scat | 89.06 |
| >d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Peptide methionine sulfoxide reductase family: Peptide methionine sulfoxide reductase domain: Peptide methionine sulfoxide reductase species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.7e-72 Score=454.70 Aligned_cols=152 Identities=46% Similarity=0.774 Sum_probs=144.5
Q ss_pred CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL 80 (168)
Q Consensus 1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~ 80 (168)
+|+||||||||+|+.|++++||++|+|||+||.++||||++||+|.|||+|+|+|+|||++|||++||++||++||||+.
T Consensus 39 ~a~fagGCFWg~E~~f~~~~GV~~t~vGY~GG~~~nPtY~~Vc~g~TgH~E~V~V~yDp~~isy~~LL~~F~~~hDPT~~ 118 (192)
T d1fvga_ 39 MAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWENHDPTQG 118 (192)
T ss_dssp EEEEEESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHHHTSCTTCS
T ss_pred EEEEEecccccceeeeeecCCeEEEEeeeccCCCCCCCcceeecCCCCCeeEEEEEEecccCCHHHHHHHHHhhcccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhcc--CCCceEEEEecCCCcccChhHHHHHHHhCCCCCC
Q 036991 81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMK--DQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGS 152 (168)
Q Consensus 81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~--~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~~~ 152 (168)
||||+|+|+||||+||++|++|+++|+++++++++.+. ..++|+|+|+|+.+||+||+|||+||+|||+.+|
T Consensus 119 n~Qg~D~G~QYRSaIf~~~~~q~~~a~~~~~~~~~~~~~~~~~~I~TeI~~~~~Fy~AEeyHQ~Yl~knP~~YC 192 (192)
T d1fvga_ 119 MRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLITTDIREGQTFYYAEDYHQQYLSKDPDGYC 192 (192)
T ss_dssp SEETTEESGGGCEEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCCEECSSCCCEECCGGGTTHHHHSTTCCC
T ss_pred cceecccCccccceeehhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeecCCCEeECHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999998876432 1478999999999999999999999999997654
|
| >d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} | Back information, alignment and structure |
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| >d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} | Back information, alignment and structure |
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| >d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} | Back information, alignment and structure |
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| >d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2phcb2 d.74.5.1 (B:2-85) Uncharacterized protein PH0987 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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| >d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} | Back information, alignment and structure |
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