Citrus Sinensis ID: 036999

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
LPQSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPYGIRVAEFTNKISQLRNTLGRSGIKDEGLVVPKALGAEGKIEGNVLAGDENSVAYDRTPEEVLRIVYGSGNERVPGGFYPKGGDGRIAKSHLPK
cccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccEEccccccccccccHHHHHHHHHccccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcHEHHHcccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccEEEccccccccccEEEEEEccccccEccccHHHHHHHHEccccccccccccccccccHEHHHHccc
lpqsdvdllefplnLEYLEAEFFLFGslgygldkvapnltlggpaplgakkanldplTKDLVLQFAWQEVGHLKAIKKTvkgfprplldlsagsFAKVIDkafgkplnppfdpyanSINYLIASYLipyvgltgyvganpnlqNAISKRLVAGLLGVESGQDAVIRAFLYEKanekvhpyGIRVAEFTNKISQLRNTlgrsgikdeglvvpkalgaegkiegnvlagdensvaydrtpEEVLRIVYgsgnervpggfypkggdgriakshlpk
LPQSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPYGIRVAEFTNKISQLRNtlgrsgikdeglvVPKAlgaegkiegnvlagdensvaydrtpEEVLRIVYGsgnervpggfypkggdgriakshlpk
LPQSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPYGIRVAEFTNKISQLRNTLGRSGIKDEGLVVPKALGAEGKIEGNVLAGDENSVAYDRTPEEVLRIVYGSGNERVPGGFYPKGGDGRIAKSHLPK
******DLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPYGIRVAEFTNKISQLRNTLGRSGIKDEGLVVPKALGAEGKIEGNVLAGDENSVAYDRTPEEVLRIVYGSGNERVP*GF****************
*PQSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPYGIRVAEFTNKISQLRNTLGRSGIKDEGLVVPKALGAEGKIEGNVLAGDENSVAYDRTPEEVLRIVYGSGNERVPGGFYPKGGDGRIAKSHL**
LPQSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPYGIRVAEFTNKISQLRNTLGRSGIKDEGLVVPKALGAEGKIEGNVLAGDENSVAYDRTPEEVLRIVYGSGNERVPGGFYPKGGDGRIAKSHLPK
LPQSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPYGIRVAEFTNKISQLRNTLGRSGIKDEGLVVPKALGAEGKIEGNVLAGDENSVAYDRTPEEVLRIVYGSGNERVPGGFYPKGGDGRIAKSHLPK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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LPQSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPYGIRVAEFTNKISQLRNTLGRSGIKDEGLVVPKALGAEGKIEGNVLAGDENSVAYDRTPEEVLRIVYGSGNERVPGGFYPKGGDGRIAKSHLPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query273 2.2.26 [Sep-21-2011]
P22242313 Desiccation-related prote N/A no 0.970 0.846 0.630 6e-97
>sp|P22242|DRPE_CRAPL Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1 Back     alignment and function desciption
 Score =  353 bits (907), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 167/265 (63%), Positives = 207/265 (78%)

Query: 1   LPQSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKD 60
           +P+SDV LLEFPLNLE LEAEFF + + G G+D++ P L  GGP+P+G +KANL P  +D
Sbjct: 35  IPKSDVSLLEFPLNLELLEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLSPFIRD 94

Query: 61  LVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINY 120
           ++ QFA+QE GH++AI+ +V+GFPRPLLDLSA SFA V+D AFGK L PPFDPYAN INY
Sbjct: 95  IIAQFAYQEFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINY 154

Query: 121 LIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPY 180
           L+A Y++PYVGLTGYVGANP L++ +S++LVAGLL VE+GQDA+IRA LYE+A +KV PY
Sbjct: 155 LLACYVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPY 214

Query: 181 GIRVAEFTNKISQLRNTLGRSGIKDEGLVVPKALGAEGKIEGNVLAGDENSVAYDRTPEE 240
           GI VAEFTNKIS+LRN LG  G+KD GL+V   LGAEGKI GNVLAGD+NS+A+ RTPE 
Sbjct: 215 GITVAEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPER 274

Query: 241 VLRIVYGSGNERVPGGFYPKGGDGR 265
            L     +     P  F PK   G+
Sbjct: 275 CLGSCTAAAMRPSPAAFIPKAPTGK 299

Craterostigma plantagineum (taxid: 4153)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
224099099313 predicted protein [Populus trichocarpa] 0.992 0.865 0.785 1e-121
449462134310 PREDICTED: desiccation-related protein P 0.985 0.867 0.762 1e-118
297852412315 hypothetical protein ARALYDRAFT_891606 [ 0.981 0.850 0.757 1e-116
21593191315 dessication-related protein, putative [A 0.981 0.850 0.753 1e-115
18401988315 uncharacterized protein [Arabidopsis tha 0.981 0.850 0.753 1e-115
356529093313 PREDICTED: desiccation-related protein P 0.989 0.862 0.751 1e-115
12323093302 dessication-related protein, putative; 7 0.981 0.887 0.753 1e-115
255556470311 conserved hypothetical protein [Ricinus 1.0 0.877 0.743 1e-113
296083215 474 unnamed protein product [Vitis vinifera] 1.0 0.575 0.732 1e-113
359477103303 PREDICTED: desiccation-related protein P 1.0 0.900 0.732 1e-112
>gi|224099099|ref|XP_002311374.1| predicted protein [Populus trichocarpa] gi|222851194|gb|EEE88741.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/271 (78%), Positives = 237/271 (87%)

Query: 1   LPQSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKD 60
           +PQSD+DLLEFPLNLEYLEAEFFL+GS+G GLD  APNLT+GGP PLGAKKANLDP T+D
Sbjct: 40  IPQSDIDLLEFPLNLEYLEAEFFLYGSMGQGLDNFAPNLTMGGPKPLGAKKANLDPYTRD 99

Query: 61  LVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINY 120
           ++ QFAWQEVGHL+AIK TV+GFPRPLLDLS  SFAK +D AFGK L+PPFDPYA+S++Y
Sbjct: 100 VIKQFAWQEVGHLRAIKDTVQGFPRPLLDLSTKSFAKTMDAAFGKRLSPPFDPYASSLHY 159

Query: 121 LIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPY 180
           LIASY+IPYVGLTGYVGANP LQ A SKRLVAGLL VESGQDAVIR  LYE A  ++HPY
Sbjct: 160 LIASYVIPYVGLTGYVGANPKLQAAASKRLVAGLLAVESGQDAVIRGLLYEYALIRLHPY 219

Query: 181 GIRVAEFTNKISQLRNTLGRSGIKDEGLVVPKALGAEGKIEGNVLAGDENSVAYDRTPEE 240
           GI VAEFTN+IS LRN LG+ GIKDEGLVVPK  GAEG+I GNVLAGDE S+ Y RTPEE
Sbjct: 220 GITVAEFTNRISDLRNKLGQEGIKDEGLVVPKKFGAEGQIRGNVLAGDEYSIGYARTPEE 279

Query: 241 VLRIVYGSGNERVPGGFYPKGGDGRIAKSHL 271
           +LR+VYGSGNE  PGGFYPKG DGRIAKSHL
Sbjct: 280 ILRVVYGSGNESTPGGFYPKGADGRIAKSHL 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449462134|ref|XP_004148796.1| PREDICTED: desiccation-related protein PCC13-62-like [Cucumis sativus] gi|449511873|ref|XP_004164077.1| PREDICTED: desiccation-related protein PCC13-62-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297852412|ref|XP_002894087.1| hypothetical protein ARALYDRAFT_891606 [Arabidopsis lyrata subsp. lyrata] gi|297339929|gb|EFH70346.1| hypothetical protein ARALYDRAFT_891606 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21593191|gb|AAM65140.1| dessication-related protein, putative [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18401988|ref|NP_564518.1| uncharacterized protein [Arabidopsis thaliana] gi|332194113|gb|AEE32234.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356529093|ref|XP_003533131.1| PREDICTED: desiccation-related protein PCC13-62-like [Glycine max] Back     alignment and taxonomy information
>gi|12323093|gb|AAG51530.1|AC051631_10 dessication-related protein, putative; 70055-71849 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255556470|ref|XP_002519269.1| conserved hypothetical protein [Ricinus communis] gi|223541584|gb|EEF43133.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|296083215|emb|CBI22851.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477103|ref|XP_002273659.2| PREDICTED: desiccation-related protein PCC13-62-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
TAIR|locus:2202593315 AT1G47980 "AT1G47980" [Arabido 0.978 0.847 0.756 1.5e-108
TAIR|locus:2081645317 AT3G62730 "AT3G62730" [Arabido 0.981 0.845 0.591 3.2e-81
TAIR|locus:2202593 AT1G47980 "AT1G47980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
 Identities = 202/267 (75%), Positives = 234/267 (87%)

Query:     5 DVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQ 64
             D  LLEFPLNLEYLEAEFFLFG+LG GLDKVAPNLT+GGP+P+GA+KANLDPLT+D++LQ
Sbjct:    43 DRKLLEFPLNLEYLEAEFFLFGALGLGLDKVAPNLTMGGPSPIGAQKANLDPLTRDIILQ 102

Query:    65 FAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIAS 124
             FAWQEVGHL+AIKKTVKGF RP LDLS  +FAKV+DKAFG    PPF+PYANS NYLIAS
Sbjct:   103 FAWQEVGHLRAIKKTVKGFARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYANSYNYLIAS 162

Query:   125 YLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPYGIRV 184
             YL+PYVGLTGYVGANP LQ   S++LVAGLLGVESGQDAVIR  LY +A   V+PYG+ V
Sbjct:   163 YLVPYVGLTGYVGANPKLQCPASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVTV 222

Query:   185 AEFTNKISQLRNTLGRSGIKDEGLVVPKALGAEGKIEGNVLAGDENSVAYDRTPEEVLRI 244
             A FT+KIS LRN LG++G+KDEGL+VPK +GAEG++ GNVL G+E S+++DRTPEE+LRI
Sbjct:   223 AAFTDKISDLRNKLGKAGVKDEGLIVPKFMGAEGQVIGNVLVGNELSLSFDRTPEEILRI 282

Query:   245 VYGSGNERVPGGFYPKGGDGRIAKSHL 271
             VYGSGNE VPGGFYPKG DG IAKS+L
Sbjct:   283 VYGSGNESVPGGFYPKGADGEIAKSYL 309
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2081645 AT3G62730 "AT3G62730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P22242DRPE_CRAPLNo assigned EC number0.63010.97060.8466N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
pfam13668137 pfam13668, Ferritin_2, Ferritin-like domain 2e-46
>gnl|CDD|222304 pfam13668, Ferritin_2, Ferritin-like domain Back     alignment and domain information 
 Score =  151 bits (384), Expect = 2e-46
 Identities = 58/170 (34%), Positives = 80/170 (47%), Gaps = 35/170 (20%)

Query: 4   SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVL 63
           SDVD+L F L LEYLEA F+L    G+GLD                 KA LD   + L  
Sbjct: 1   SDVDILNFALTLEYLEAAFYLQALAGFGLD--------------DFAKAGLDAAVRALAE 46

Query: 64  QFAWQEVGHLKAIKKTV--KGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYL 121
           + A  EV H++ +K  +     PRP  D                    PFDP+ + +++L
Sbjct: 47  EIADHEVAHVRFLKAALGGAPVPRPTFDF-------------------PFDPFTDRLSFL 87

Query: 122 IASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYE 171
             +Y++  VG++ Y+GA P L N       A +LGVE+   AVIR  L E
Sbjct: 88  ALAYVLEDVGVSAYLGAAPLLSNKDYLAAAASILGVEARHAAVIRTLLGE 137

This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins. Length = 137

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 273
PF13668137 Ferritin_2: Ferritin-like domain 100.0
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 98.54
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 98.46
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 97.83
cd01048135 Ferritin_like_AB2 Uncharacterized family of ferrit 97.65
COG1633176 Uncharacterized conserved protein [Function unknow 97.01
cd07908154 Mn_catalase_like Manganese catalase-like protein, 96.86
PRK13456186 DNA protection protein DPS; Provisional 96.72
PRK127751006 putative trifunctional 2-polyprenylphenol hydroxyl 96.71
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 96.25
cd00907153 Bacterioferritin Bacterioferritin, ferritin-like d 95.56
cd01052148 DPSL DPS-like protein, ferritin-like diiron-bindin 95.49
PF13668137 Ferritin_2: Ferritin-like domain 94.54
cd01051156 Mn_catalase Manganese catalase, ferritin-like diir 94.21
cd07908154 Mn_catalase_like Manganese catalase-like protein, 93.84
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 93.74
PRK10635158 bacterioferritin; Provisional 93.61
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 89.99
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 89.44
TIGR02284139 conserved hypothetical protein. Members of this pr 89.39
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 87.43
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 83.93
TIGR00754157 bfr bacterioferritin. Bacterioferritin is a homomu 82.56
PF14530131 DUF4439: Domain of unknown function (DUF4439); PDB 82.29
PRK127751006 putative trifunctional 2-polyprenylphenol hydroxyl 80.42
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information 
Probab=100.00  E-value=8.4e-34  Score=234.21  Aligned_cols=134  Identities=39%  Similarity=0.694  Sum_probs=125.2

Q ss_pred             ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhh-c-
Q 036999            4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTV-K-   81 (273)
Q Consensus         4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL-g-   81 (273)
                      +|++||||||+|||||.+||.+++.+++.++ .              +..+++.+++++++|+.||..|+++|+++| | 
T Consensus         1 ~D~~iL~~Al~lE~l~~~fY~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~g~   65 (137)
T PF13668_consen    1 GDLDILNFALNLEYLEADFYQQAAEGFTLQD-N--------------KAALDPEVRDLFQEIADQEQGHVDFLQAALEGG   65 (137)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCChhh-h--------------hccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            6999999999999999999999998887664 1              356789999999999999999999999999 6 


Q ss_pred             -CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccccCCChhHHHHHHhHHHhhhh
Q 036999           82 -GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESG  160 (273)
Q Consensus        82 -av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~  160 (273)
                       ++++|.||+                   +||||+|+.+||..|+.||++|+++|+|++++++|+++++++++|++||++
T Consensus        66 ~~~~~~~~~~-------------------~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~i~~~Ea~  126 (137)
T PF13668_consen   66 RPVPPPAYDF-------------------PFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAASIAGVEAR  126 (137)
T ss_pred             CCCCCCcccc-------------------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence             778898887                   489999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHH
Q 036999          161 QDAVIRAFLYE  171 (273)
Q Consensus       161 Haa~IR~lL~~  171 (273)
                      |++|||++|+|
T Consensus       127 H~~~ir~ll~~  137 (137)
T PF13668_consen  127 HAAWIRNLLGQ  137 (137)
T ss_pred             HHHHHHHHhcC
Confidence            99999999985

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK13456 DNA protection protein DPS; Provisional Back     alignment and domain information
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>PRK10635 bacterioferritin; Provisional Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>TIGR02284 conserved hypothetical protein Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>TIGR00754 bfr bacterioferritin Back     alignment and domain information
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B Back     alignment and domain information
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 29/217 (13%), Positives = 57/217 (26%), Gaps = 65/217 (29%)

Query: 53  NLDPLTKDLVLQ---------FAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAF 103
             D    +   +          + +E+ H+   K  V G  R L         +++ K  
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFV 83

Query: 104 GKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDA 163
            + L   +    + I         P +    Y+     L N                   
Sbjct: 84  EEVLRINYKFLMSPIKT---EQRQPSMMTRMYIEQRDRLYND------------------ 122

Query: 164 VIRAFLYEKANEKVHPYGIRVAEFTNKISQLRNTLGRSGIKDEGLVVPKALGAEGKIEGN 223
                     N+    Y +   +      +LR  L    ++    V+   +   GK    
Sbjct: 123 ----------NQVFAKYNVSRLQ---PYLKLRQAL--LELRPAKNVLIDGVLGSGK---T 164

Query: 224 VLAGD-----------EN-----SVAYDRTPEEVLRI 244
            +A D           +      ++    +PE VL +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
2ib0_A170 Conserved hypothetical alanine rich protein; 4-hel 98.51
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 98.03
2fzf_A175 Hypothetical protein; structural genomics, southea 97.88
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 97.81
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 96.9
3fse_A365 Two-domain protein containing DJ-1/THIJ/PFPI-like 96.67
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 96.17
3q4o_A196 Uncharacterized protein MJ0754; ferritin-like prot 96.17
4etr_A153 Putative uncharacterized protein; DUF2383, domain 96.16
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 95.97
3r2k_A154 Bacterioferritin, BFR; bacterial ferritin, iron bi 95.82
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 95.79
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 95.55
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 95.44
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 95.19
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 95.16
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 94.66
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 94.42
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 94.39
3fvb_A182 Bacterioferritin; niaid, ssgcid, decode, structura 94.18
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 93.5
2vzb_A170 Putative bacterioferritin-related protein; DPS, DP 93.06
2fzf_A175 Hypothetical protein; structural genomics, southea 91.6
4di0_A144 Rubrerythrin; ssgcid, seattle structural genomics 89.69
1lko_A191 Rubrerythrin all-iron(II) form; reduced form, DIIR 87.79
1ji5_A142 DLP-1; dodecamer, four-helix bundle, metal transpo 86.14
1n1q_A149 DPS protein; four-helix bundle, unknown function; 85.15
2jd6_0174 Ferritin homolog, ferritin; metal transport, iron, 84.81
1krq_A167 Ferritin; H-chain like four-helix bundle, binding 83.75
3oj5_A189 Ferritin family protein; ferroxidase, cytosol, oxi 82.92
2vxx_A192 Starvation induced DNA binding protein; stress res 82.76
2v8t_A302 Manganese-containing pseudocatalase; manganese cat 82.21
1jig_A146 DLP-2; dodecamer, four-helix bundle, metal transpo 81.7
1yuz_A202 Nigerythrin; rubrythrin, rubredoxin, hemerythrin, 80.93
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 80.25
>2ib0_A Conserved hypothetical alanine rich protein; 4-helix bundle, structural genomics, PSI-2, protein structur initiative; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.9 Back     alignment and structure
Probab=98.51  E-value=2.2e-07  Score=80.15  Aligned_cols=126  Identities=14%  Similarity=0.033  Sum_probs=104.5

Q ss_pred             ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 036999            4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK--   81 (273)
Q Consensus         4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--   81 (273)
                      .|+++||-||..||  +.-|-+++     -                 .+.+++.+++.+.+...+...|...|+.+|.  
T Consensus        21 ~d~~aL~~ALaaEh--aAIyaYGv-----~-----------------~a~l~~~~~~~a~~~~~~HrarRD~L~~~l~~~   76 (170)
T 2ib0_A           21 ADNAALCDALAVEH--ATIYGYGI-----V-----------------SALSPPGVNFLVADALKQHRHRRDDVIVMLSAR   76 (170)
T ss_dssp             HHHHHHHHHHHHHH--HHHHHHHH-----H-----------------HHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHH--HHHHHHHH-----H-----------------HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            47889999999999  23333443     1                 2456788999999999999999999999987  


Q ss_pred             -CC---CCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccccCCChhHHHHHHhHHHh
Q 036999           82 -GF---PRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGV  157 (273)
Q Consensus        82 -av---~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~V  157 (273)
                       +.   ++|.|+|                   ||. ..|..+-+..+..+|.=...+|.++.+...+++.++.|+++|+.
T Consensus        77 G~~pp~a~aaY~l-------------------P~~-v~d~asa~~lAa~lE~~~A~ay~~~v~~a~~~~~R~~A~~aL~~  136 (170)
T 2ib0_A           77 GVTAPIAAAGYQL-------------------PMQ-VSSAADAARLAVRMENDGATAWRAVVEHAETADDRVFASTALTE  136 (170)
T ss_dssp             TCCCCCCCSSCCC-------------------SSC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             CCCCCCCcCcCCC-------------------CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence             22   2233433                   454 58889999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhh
Q 036999          158 ESGQDAVIRAFLYEKA  173 (273)
Q Consensus       158 EA~Haa~IR~lL~~~~  173 (273)
                      +|.|+...|..+.+..
T Consensus       137 aAvr~a~wr~alG~~P  152 (170)
T 2ib0_A          137 SAVMATRWNRVLGAWP  152 (170)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhcCCCC
Confidence            9999999999999876
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A Back     alignment and structure
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa} Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A Back     alignment and structure
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1 Back     alignment and structure
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 Back     alignment and structure
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Back     alignment and structure
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A Back     alignment and structure
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus} Back     alignment and structure
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A Back     alignment and structure
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Back     alignment and structure
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 273
d2ib0a1142 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {M 2e-04
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 142 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Rv2844-like
domain: Hypothetical protein Rv2844
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 19/166 (11%), Positives = 40/166 (24%), Gaps = 38/166 (22%)

Query: 4   SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVL 63
           +D   L   L +E+  A  +     GYG+                   A   P    LV 
Sbjct: 5   ADNAALCDALAVEH--ATIY-----GYGIV-----------------SALSPPGVNFLVA 40

Query: 64  QFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIA 123
               Q       +   +               A+ +               +++ +    
Sbjct: 41  DALKQHRHRRDDVIVMLS--------------ARGVTAPIAAAGYQLPMQVSSAADAARL 86

Query: 124 SYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFL 169
           +  +   G T +     + + A  +   +  L   +         L
Sbjct: 87  AVRMENDGATAWRAVVEHAETADDRVFASTALTESAVMATRWNRVL 132

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 99.78
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 98.69
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 98.68
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 98.48
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 96.73
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 96.52
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 96.47
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 96.0
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 95.77
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 95.71
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 94.92
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 94.76
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 93.69
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 92.92
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 90.86
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Rv2844-like
domain: Hypothetical protein Rv2844
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=3.8e-19  Score=144.62  Aligned_cols=131  Identities=12%  Similarity=-0.017  Sum_probs=109.0

Q ss_pred             ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-C
Q 036999            4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK-G   82 (273)
Q Consensus         4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a   82 (273)
                      .|.++||+||.+||  +.+|.+++..                      +.+++.+++++++++.||..|+.+|++.+. .
T Consensus         5 ~d~~~L~~AL~~E~--aaiy~Y~~a~----------------------~~~~~~~~~~~~~~~~~e~~H~~~L~~~i~~l   60 (142)
T d2ib0a1           5 ADNAALCDALAVEH--ATIYGYGIVS----------------------ALSPPGVNFLVADALKQHRHRRDDVIVMLSAR   60 (142)
T ss_dssp             HHHHHHHHHHHHHH--HHHHHHHHHH----------------------HHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHH--HHHHHHHHHh----------------------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            69999999999999  5588886521                      234678899999999999999999998886 3


Q ss_pred             CCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccccCCChhHHHHHHhHHHhhhhhH
Q 036999           83 FPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQD  162 (273)
Q Consensus        83 v~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~Ha  162 (273)
                      ...|......            +.   .-++++|..++|..+..+|..++.+|.+++..++|+++++++++||++||+|+
T Consensus        61 gg~p~~~~~~------------~~---~~~~~td~~~~l~~a~~~E~~a~~~Y~~~~~~~~d~~~r~la~~il~~ea~ha  125 (142)
T d2ib0a1          61 GVTAPIAAAG------------YQ---LPMQVSSAADAARLAVRMENDGATAWRAVVEHAETADDRVFASTALTESAVMA  125 (142)
T ss_dssp             TCCCCCCCSS------------CC---CSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccccc------------cc---cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            3333322211            11   12467899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 036999          163 AVIRAFLYEKA  173 (273)
Q Consensus       163 a~IR~lL~~~~  173 (273)
                      +++|..+...+
T Consensus       126 ~~~r~~~~~~p  136 (142)
T d2ib0a1         126 TRWNRVLGAWP  136 (142)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHhcCCCC
Confidence            99999999875
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure