Citrus Sinensis ID: 037008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MADYAHAAAADDSSSSSDQHSPPPASSSKKNKNSHHHHHHHHHQQLMVIESSSTPENATRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISSDEGDNQVDAETKPNIVGASAATESCSSAGKTMPVYGVAAVAGNPTPLSCQILPIIIT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccEEEEEEEcccccHHHHHHHHHHHcccEEEEEEcccEEEEEEEEcccccccEEEEEEcEEEEEEEEEcccccccccccccEEEEEcccccEEccccccEEEEEccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEcccccccccccccccEEEEEEcccccEEEccEHHHHHccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEc
Coil and Loop (DISEMBL)
MADYAhaaaaddsssssdqhspppassskknknshhhhhhhhhqqlmviessstpenatrkprgrppgsknkpkppvvitrditdssamkPVILEISAGADIIDSVITFARRNHAGISLVsasgsvshvtlrqpishahslslhgpfhllslsgsfydsssssspssfgvtLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNplvhslpissdegdnqvdaetkpnivgasaatescssagktmpvygvaavagnptplscqilpiiit
Flexible Loop (DISEMBL)
MADYAHAaaaddsssssdqhSPPPASSSKKNKNSHHHHHHHHHQQLMVIESSSTPENAtrkprgrppgsknkpkppvvitrditdssamkPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISSDEGDNQVDAETKPNIVGASAATESCSSAGKTMPVYGVAAVagnptplscqilpiiit
Low Complexity Region (SEG)
MADYahaaaaddsssssdqhspppassskknknshhhhhhhhhQQLMVIESSSTPENATRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHAHSLSLHGPFHllslsgsfydsssssspssFGVTLAGAQGQVFGGIvagkvtaaskvvvvaatFLNPLVHSLPISSDEGDNQVDAETKPNIVGASAATESCSSAGKTMPVYGVAAVAGNPTPLSCQILPIIIT
Disordered region (IsUnstruct)
******************************************************************************I**DIT**SAMKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSG*************FGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSL***********************************MPVYGVAAVAGNPTPLSCQILPIII*
Disordered Region (DISOPRED)
**************************************************************************************SAMKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSS*********VTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLN*******************************************************************
Disordered Region (DISEMBL)
***********************************************VIESS**********************PPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGS**************VTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISSDEGDNQVDAETKPNIVGASAATESCSSAGKTMPVYGVAAVAGNPTPLSCQILPIIIT
Disordered Region (DISPRO)
***********************************************************************KPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVH**************************************PVYGV**VAGNPTPLSCQILPIIIT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADYAHAAAADDSSSSSDQHSPPPASSSKKNKNSHHHHHHHHHQQLMVIESSSTPENATRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISSDEGDNQVDAETKPNIVGASAATESCSSAGKTMPVYGVAAVAGNPTPLSCQILPIIIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.674	0.585	0.388	3e-26

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 118/193 (61%), Gaps = 11/193 (5%)

Query: 28  SKKNKNSHHHHHHHHHQQLMVIESSSTPENATRKPRGRPPGSKNKPKPPVVITRDITDSS 87
           S  ++ S H +  HH Q     + +++     ++PRGRPPGSKNK KPP+++TRD    +
Sbjct: 54  SDDSRESDHSNKDHHQQGRPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPIIVTRD--SPN 111

Query: 88  AMKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPIS---------HA 138
           A++  +LE+S GADI++SV T+ARR   G+S++  +G+VS+VTLRQP++           
Sbjct: 112 ALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGG 171

Query: 139 HSLSLHGPFHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVA 198
             ++LHG F +LSL+G+     +        + LAG QGQV GG V   + A++ V+++A
Sbjct: 172 GVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMA 231

Query: 199 ATFLNPLVHSLPI 211
           A+F N +   LPI
Sbjct: 232 ASFSNAVFERLPI 244


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.124    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,285,678
Number of Sequences: 539616
Number of extensions: 4123922
Number of successful extensions: 29827
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 186
Number of HSP's that attempted gapping in prelim test: 22659
Number of HSP's gapped (non-prelim): 3749
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
255580141	251	DNA binding protein, putative [Ricinus c	0.733	0.788	0.668	1e-62
224103955	303	predicted protein [Populus trichocarpa]	0.803	0.716	0.558	4e-59
224059721	172	predicted protein [Populus trichocarpa]	0.570	0.895	0.649	4e-48
449442723	277	PREDICTED: putative DNA-binding protein	0.648	0.631	0.580	1e-44
225436640	275	PREDICTED: putative DNA-binding protein	0.614	0.603	0.491	1e-42
147840658	275	hypothetical protein VITISV_020444 [Viti	0.614	0.603	0.491	2e-42
357465293	290	hypothetical protein MTR_3g100470 [Medic	0.655	0.610	0.453	6e-39
168026651	165	predicted protein [Physcomitrella patens	0.570	0.933	0.512	9e-39
168000569	156	predicted protein [Physcomitrella patens	0.570	0.987	0.506	5e-38
168009644	156	predicted protein [Physcomitrella patens	0.570	0.987	0.519	6e-38

>gi|255580141|ref|XP_002530902.1| DNA binding protein, putative [Ricinus communis] gi|223529524|gb|EEF31478.1| DNA binding protein, putative [Ricinus communis]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 145/217 (66%), Positives = 172/217 (79%), Gaps = 19/217 (8%)

Query: 60  RKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGISL 119
           RKPRGRPPGSKNKPKPP+VIT+D    SAMKPVILEISAG+DIIDS+I FARRNH+GIS+
Sbjct: 30  RKPRGRPPGSKNKPKPPIVITKD--SDSAMKPVILEISAGSDIIDSIINFARRNHSGISV 87

Query: 120 VSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFY---------DSSSSSSPS-SFG 169
           +SA+GSVS+VTLR P+SHA SLSLHGPF++LSLSG+F           SSS  SPS  FG
Sbjct: 88  ISATGSVSNVTLRHPLSHAPSLSLHGPFNILSLSGTFLGSFTPKQSAGSSSVGSPSCCFG 147

Query: 170 VTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISSDEGDNQVDAETKPNIV 229
           ++LAGAQGQVFGGIVAGKV AAS+VVVVAATFLNP  H LP  SD  DN+V+ ET+P++ 
Sbjct: 148 ISLAGAQGQVFGGIVAGKVLAASQVVVVAATFLNPTFHRLP--SDHNDNEVE-ETEPSLG 204

Query: 230 GASAATESCSSAGKTMPVYGVAAVAGNPTPLSCQILP 266
           G ++A ESC S G +M VY VA    NPTP++ Q+ P
Sbjct: 205 GPASANESCVSTGMSMTVYAVA----NPTPINSQMSP 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103955|ref|XP_002313259.1| predicted protein [Populus trichocarpa] gi|222849667|gb|EEE87214.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 143/256 (55%), Positives = 179/256 (69%), Gaps = 39/256 (15%)

Query: 31  NKNSHHHHHHHHHQQLMVIESSSTPENATRKPRGRPPGSKNKPKPPVVITRDITDSSAMK 90
           N  S   H HH++ Q + I+         RKPRGRPPGSKN+PKPP++IT+D    S+MK
Sbjct: 52  NNTSPDDHIHHNNIQSVQIQ---------RKPRGRPPGSKNRPKPPIIITKDC--ESSMK 100

Query: 91  PVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLL 150
           P ILEISAG+D+I++++ FARRNHAGIS++SA+GSV++VTLR P+SH  SLSLHGPF+LL
Sbjct: 101 PAILEISAGSDVIETIVNFARRNHAGISVISATGSVANVTLRHPVSHTPSLSLHGPFNLL 160

Query: 151 SLSGSFYDS------SSSSSP--------SSFGVTLAGAQGQVFGGIVAGKVTAASKVVV 196
           +L GS   S      S +SSP        SSFG++LAGAQGQVFGGIVAGKV AA++VVV
Sbjct: 161 ALFGSVVGSLATNKASCASSPPGSAVHSCSSFGISLAGAQGQVFGGIVAGKVIAATQVVV 220

Query: 197 VAATFLNPLVHSLPISSDEGDNQVDAETKPNIVGASA------ATESCSSAGKTMPVYGV 250
           VAATFLNP  H LP  +DE D     ETKP++ G         A+ESC S G +M VYGV
Sbjct: 221 VAATFLNPTFHRLPGENDEADQ----ETKPSVGGGGGGGGGGPASESCVSTGMSMAVYGV 276

Query: 251 AAVAGNPTPLSCQILP 266
           A    NPTP++CQ+ P
Sbjct: 277 A----NPTPVNCQMSP 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059721|ref|XP_002299979.1| predicted protein [Populus trichocarpa] gi|222847237|gb|EEE84784.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 111/171 (64%), Positives = 136/171 (79%), Gaps = 17/171 (9%)

Query: 60  RKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGISL 119
           RKPRGRPPGSKN+PKPP++IT+D    S+MKPVILEISAG+DII+++I FARRNHAGIS+
Sbjct: 4   RKPRGRPPGSKNRPKPPIIITKDC--ESSMKPVILEISAGSDIIETIINFARRNHAGISV 61

Query: 120 VSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSS--------------- 164
           +SA+GSVS+VTL  P+SHA SLSLHGPF+LL+L GSF  S +S+                
Sbjct: 62  MSANGSVSNVTLSHPVSHAPSLSLHGPFNLLALFGSFVGSFASNKVPCASSSSSPGSVYS 121

Query: 165 PSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISSDE 215
            SSFG++LAGAQGQVFGGIVAGKV AA++VVVVAATF+NP  H LP  +D+
Sbjct: 122 CSSFGISLAGAQGQVFGGIVAGKVIAANQVVVVAATFVNPTFHRLPCENDK 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442723|ref|XP_004139130.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Cucumis sativus] gi|449530311|ref|XP_004172139.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Cucumis sativus]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 145/193 (75%), Gaps = 18/193 (9%)

Query: 51  SSSTPENATRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFA 110
           +SS   +  +KPRGRPPGSKNKPKPP+VIT++  + S+MKPV++EISAG D++D+++ FA
Sbjct: 44  ASSVDTSTMKKPRGRPPGSKNKPKPPIVITKE--NESSMKPVVIEISAGNDVVDTLLHFA 101

Query: 111 RRNHAGISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSS--------- 161
           R+ H G++++S SGSVS+VTLR P+SH+ SLSLHGPF L+SLSGSF  +++         
Sbjct: 102 RKRHVGLTVLSGSGSVSNVTLRHPMSHSTSLSLHGPFSLVSLSGSFLANTTPFSSKPHSL 161

Query: 162 -----SSSPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISSDEG 216
                 S  SSFG+ LAGAQGQVFGGIV GKVTAAS VVVVAATF+NP+ H LP  + EG
Sbjct: 162 SPSPSPSPSSSFGICLAGAQGQVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEG 221

Query: 217 -DNQVDAETKPNI 228
            D++VD   KP I
Sbjct: 222 EDDRVDM-AKPTI 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436640|ref|XP_002276021.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Vitis vinifera]

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 122/175 (69%), Gaps = 9/175 (5%)

Query: 57  NATRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAG 116
            A RKPRGRPPGSKNKPKPP+VITR+    S MKP+++E++ G D+ ++V+ FARR   G
Sbjct: 64  EAPRKPRGRPPGSKNKPKPPIVITREC--ESGMKPIVIEVAPGNDLFETVVQFARRRRVG 121

Query: 117 ISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSSP----SSFGVTL 172
           I+++   G++S+VT RQP+ HA + SLHGP  ++ +SG +    + ++P    +SF V++
Sbjct: 122 ITILHGFGTISNVTFRQPVPHAPTYSLHGPLCIIYISGWYLGCPTPATPATSRASFSVSV 181

Query: 173 AGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLP---ISSDEGDNQVDAET 224
           AG QGQ++GG VAGKVTA+  V ++A+TF NP VH LP     +DEG N   A T
Sbjct: 182 AGTQGQIYGGQVAGKVTASGPVTLIASTFTNPSVHRLPSDIEDTDEGKNNGGAST 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840658|emb|CAN68541.1| hypothetical protein VITISV_020444 [Vitis vinifera]

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 122/175 (69%), Gaps = 9/175 (5%)

Query: 57  NATRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAG 116
            A RKPRGRPPGSKNKPKPP+VITR+    S MKP+++E++ G D+ ++V+ FARR   G
Sbjct: 64  EAPRKPRGRPPGSKNKPKPPIVITREC--ESGMKPIVIEVAPGNDLFETVVQFARRRRVG 121

Query: 117 ISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSSP----SSFGVTL 172
           I+++   G++S+VT RQP+ HA + SLHGP  ++ +SG +    + ++P    +SF V++
Sbjct: 122 ITILHGFGTISNVTFRQPVPHAPTYSLHGPLCIIYISGWYLGCPTPATPATSRASFSVSV 181

Query: 173 AGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLP---ISSDEGDNQVDAET 224
           AG QGQ++GG VAGKVTA+  V ++A+TF NP VH LP     +DEG N   A T
Sbjct: 182 AGTQGQIYGGQVAGKVTASGPVTLIASTFTNPSVHRLPSDIEDTDEGKNNGGAST 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465293|ref|XP_003602928.1| hypothetical protein MTR_3g100470 [Medicago truncatula] gi|355491976|gb|AES73179.1| hypothetical protein MTR_3g100470 [Medicago truncatula]

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 123/183 (67%), Gaps = 6/183 (3%)

Query: 59  TRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGIS 118
           +R+PRGRPPGSKNKPKPP++ITRD    + M P IL+IS G D+++++  F+RR + G+ 
Sbjct: 73  SRRPRGRPPGSKNKPKPPIIITRD--PETVMSPFILDISGGNDVVEAISEFSRRKNIGLC 130

Query: 119 LVSASGSVSHVTLRQP-ISHAHSLSLHGPFHLLSLSGSFYDSS---SSSSPSSFGVTLAG 174
           +++ SG+V++VTLRQP  +   +++ HG F +LS++ +F       S + PS+F ++LAG
Sbjct: 131 VLTGSGTVANVTLRQPSTTPGTTVTFHGRFDILSITATFVPQQHGVSPAIPSNFSISLAG 190

Query: 175 AQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISSDEGDNQVDAETKPNIVGASAA 234
            QGQ+ GGIVAG + AA  V V+A++F NP  H LP+  DEG N V    + N    S A
Sbjct: 191 PQGQIVGGIVAGNLIAAGTVFVIASSFNNPSYHRLPLEEDEGGNSVSGGGEGNSQNVSGA 250

Query: 235 TES 237
            +S
Sbjct: 251 VDS 253

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168026651|ref|XP_001765845.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683022|gb|EDQ69436.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 80/156 (51%), Positives = 113/156 (72%), Gaps = 2/156 (1%)

Query: 60  RKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGISL 119
           RKPRGRPPGSKNKPKPPV+ITR+  + +AM+P ILE++ G D+ DSV +F+RR   G+ +
Sbjct: 2   RKPRGRPPGSKNKPKPPVIITRE--NGNAMRPHILEVAGGCDVSDSVASFSRRRQRGVCV 59

Query: 120 VSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQV 179
           + ASG+VS+VTLRQP +   +++ HG F ++SLSG+F    SS+  +   V+LAGA GQV
Sbjct: 60  MGASGTVSNVTLRQPTTPGATVTFHGRFEIISLSGAFLPHPSSAPTTGLTVSLAGAAGQV 119

Query: 180 FGGIVAGKVTAASKVVVVAATFLNPLVHSLPISSDE 215
            GG V G + AA  V+V+AA+F+ P    LP+ +D+
Sbjct: 120 LGGSVVGTLMAAGPVLVIAASFIGPTFERLPLDNDD 155

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168000569|ref|XP_001752988.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695687|gb|EDQ82029.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 79/156 (50%), Positives = 110/156 (70%), Gaps = 2/156 (1%)

Query: 60  RKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGISL 119
           RKPRGRPPGSKNKPKPP++I R+  +  AM+P ILE++ G D+ DSV +F+RR   G+ +
Sbjct: 2   RKPRGRPPGSKNKPKPPIIIMRE--NGQAMRPHILEVAGGCDVSDSVASFSRRRQRGVCV 59

Query: 120 VSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQV 179
           + ASG+VS+VTLRQP +   +++ HG F ++SLSG+F    SS   +   V+LAGA GQV
Sbjct: 60  MGASGTVSNVTLRQPTTAGATITFHGRFEIISLSGAFLPHPSSQPTTGLTVSLAGAAGQV 119

Query: 180 FGGIVAGKVTAASKVVVVAATFLNPLVHSLPISSDE 215
            GG V G + AA  VVV+AA+F+ P    LP+ +D+
Sbjct: 120 LGGSVVGTLMAAGPVVVIAASFMGPTFVRLPLDADD 155

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168009644|ref|XP_001757515.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691209|gb|EDQ77572.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 81/156 (51%), Positives = 109/156 (69%), Gaps = 2/156 (1%)

Query: 60  RKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGISL 119
           RKPRGRPPGSKNKPKPP++ITR+  +  AM+P ILEI+ G D+ DSV +F+RR   G+ +
Sbjct: 1   RKPRGRPPGSKNKPKPPIIITRE--NGQAMRPHILEIAGGCDVGDSVASFSRRRQRGVHV 58

Query: 120 VSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQV 179
           + ASG VS+VTLRQP +   +++ HG F ++SLSG+F    +S   +   VTLAGA GQV
Sbjct: 59  LGASGIVSNVTLRQPTTPGATVTFHGRFEIISLSGAFLPHLTSQPTTGLTVTLAGAAGQV 118

Query: 180 FGGIVAGKVTAASKVVVVAATFLNPLVHSLPISSDE 215
            GG V G + AA  V+V+AA+FL P    LP+  D+
Sbjct: 119 LGGSVVGTLMAAGPVLVIAASFLGPTYERLPLDPDD 154

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2157007	276	AT5G49700 [Arabidopsis thalian	0.722	0.706	0.342	1.9e-26
TAIR|locus:2118051	339	AT4G12050 "AT4G12050" [Arabido	0.766	0.610	0.359	3.2e-26
TAIR|locus:2132639	324	AT4G22810 "AT4G22810" [Arabido	0.574	0.478	0.4	6.6e-26
TAIR|locus:2129490	292	AT4G17800 [Arabidopsis thalian	0.688	0.636	0.335	3.6e-25
TAIR|locus:2050946	317	AHL22 "AT2G45430" [Arabidopsis	0.629	0.536	0.363	3.6e-25
TAIR|locus:2037350	311	ESC "ESCAROLA" [Arabidopsis th	0.592	0.514	0.373	9.7e-25
TAIR|locus:2011701	302	SOB3 "SUPPRESSOR OF PHYB-4#3"	0.688	0.615	0.335	2e-24
TAIR|locus:2099956	310	AGF2 "AT-hook protein of GA fe	0.622	0.541	0.381	3.3e-24
TAIR|locus:505006460	281	AHL20 "AT4G14465" [Arabidopsis	0.733	0.704	0.331	8.7e-24
TAIR|locus:2084958	315	AHL19 "AT-hook motif nuclear-l	0.714	0.612	0.331	1.8e-23

TAIR|locus:2157007 AT5G49700 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 72/210 (34%), Positives = 103/210 (49%)

Query:    49 IESSSTPENATRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVIT 108
             ++ SS      R+PRGRPPGSKNKPKPPV +TRD TD   M P ILE+ +G D+++++  
Sbjct:    47 VDDSSI--EVVRRPRGRPPGSKNKPKPPVFVTRD-TDPP-MSPYILEVPSGNDVVEAINR 102

Query:   109 FARRNHAGISLVSASGSVSHVTLRQPISHA--HSLSLHGPFHXXXXXXXXX-----XXXX 161
             F RR   G+ ++S SGSV++VTLRQP   A   +++ HG F                   
Sbjct:   103 FCRRKSIGVCVLSGSGSVANVTLRQPSPAALGSTITFHGKFDLLSVSATFLPPPPRTSLS 162

Query:   162 XXXXXXFGVTLAGAQGQVFGGIXXXXXXXXXXXXXXXXXFLNPLVHSLPISSDE----GD 217
                   F V+LAG QGQ+ GG                  F NP  H LP   ++    G 
Sbjct:   163 PPVSNFFTVSLAGPQGQIIGGFVAGPLISAGTVYVIAASFNNPSYHRLPAEEEQKHSAGT 222

Query:   218 NQVDAETKPNIVGASAATESCSSAGKTMPV 247
              + + ++ P   G   + +   S G++  V
Sbjct:   223 GEREGQSPPVSGGGEESGQMAGSGGESCGV 252

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118051 AT4G12050 "AT4G12050" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 77/214 (35%), Positives = 101/214 (47%)

Query:    56 ENATRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHA 115
             E  TR+PRGRP GSKNKPK P++ITRD   ++A++  ++EI  G DI+D + TFARR   
Sbjct:   114 EQMTRRPRGRPAGSKNKPKAPIIITRD--SANALRTHVMEIGDGCDIVDCMATFARRRQR 171

Query:   116 GISLVSASGSVSHVTLRQPISHAHSL-SLHGPFHXXXXXXXXXXXXXXXXXXXFGVTLAG 174
             G+ ++S +GSV++VT+RQP S   S+ SLHG F                      V LAG
Sbjct:   172 GVCVMSGTGSVTNVTIRQPGSPPGSVVSLHGRFEILSLSGSFLPPPAPPAATGLSVYLAG 231

Query:   175 AQGQVFGGIXXXXXXXXXXXXXXXXXFLNPLVHSLPISSDEGDNQVDAETKPNIVGASAA 234
              QGQV GG                  F N     LP+  DE    V         G    
Sbjct:   232 GQGQVVGGSVVGPLLCSGPVVVMAASFSNAAYERLPLEEDEMQTPVQGGGGGG--GGGGG 289

Query:   235 TESCSSAGKTMPVYGVAAVAGNPTPL--SCQILP 266
               S    G+   +  +AA  G P  L  S Q+ P
Sbjct:   290 MGSPPMMGQQQAMAAMAAAQGLPPNLLGSVQLPP 323

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132639 AT4G22810 "AT4G22810" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 64/160 (40%), Positives = 86/160 (53%)

Query:    59 TRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGIS 118
             TR+PRGRP GSKNKPKPP++ITRD   ++A++  ++EI  G D+++SV TFARR   G+ 
Sbjct:   104 TRRPRGRPAGSKNKPKPPIIITRD--SANALRTHVMEIGDGCDLVESVATFARRRQRGVC 161

Query:   119 LVSASGSVSHVTLRQPISHAHS---LSLHGPFHXXXXXXXXXXXXXXXXXXXFGVTLAGA 175
             ++S +G+V++VT+RQP SH      +SLHG F                      V LAG 
Sbjct:   162 VMSGTGNVTNVTIRQPGSHPSPGSVVSLHGRFEILSLSGSFLPPPAPPTATGLSVYLAGG 221

Query:   176 QGQVFGGIXXXXXXXXXXXXXXXXXFLNPLVHSLPISSDE 215
             QGQV GG                  F N     LP+  DE
Sbjct:   222 QGQVVGGSVVGPLLCAGPVVVMAASFSNAAYERLPLEEDE 261

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129490 AT4G17800 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 64/191 (33%), Positives = 94/191 (49%)

Query:    60 RKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGISL 119
             R+PRGRPPGSKNKPKPPV+ITR+   ++ ++  ILE++ G D+ D V T+ARR   GI +
Sbjct:    82 RRPRGRPPGSKNKPKPPVIITRE--SANTLRAHILEVTNGCDVFDCVATYARRRQRGICV 139

Query:   120 VSASGSVSHVTLRQPISHAHSLSLHGPFHXXXXXXXXXXXXXXXXXXXFGVTLAGAQGQV 179
             +S SG+V++V++RQP +    ++L G F                      + LAG QGQV
Sbjct:   140 LSGSGTVTNVSIRQPSAAGAVVTLQGTFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQV 199

Query:   180 FGGIXXXXXXXXXXXXXXXXXFLNPLVHSLPISSDEGDNQVDAETKPNIVGASAATESCS 239
              GG                  F N     LP+  DE   Q+   +     G +   E  +
Sbjct:   200 VGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEDEQQQQLGGGSNG---GGNLFPEVAA 256

Query:   240 SAGKTMPVYGV 250
               G  +P + +
Sbjct:   257 GGGGGLPFFNL 267

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2050946 AHL22 "AT2G45430" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 64/176 (36%), Positives = 91/176 (51%)

Query:    59 TRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHAGIS 118
             TR+PRGRP GSKNKPKPP++ITRD   ++A+K  ++E++ G D+++SV  FARR   GI 
Sbjct:    88 TRRPRGRPAGSKNKPKPPIIITRD--SANALKSHVMEVANGCDVMESVTVFARRRQRGIC 145

Query:   119 LVSASGSVSHVTLRQPIS----HAHSLSLHGPFHXXXXXXXXXXXXXXXXXXXFGVTLAG 174
             ++S +G+V++VT+RQP S     +  ++LHG F                      + LAG
Sbjct:   146 VLSGNGAVTNVTIRQPASVPGGGSSVVNLHGRFEILSLSGSFLPPPAPPAASGLTIYLAG 205

Query:   175 AQGQVFGGIXXXXXXXXXXXXXXXXXFLNPLVHSLPISSDEGDNQVDAETKPNIVG 230
              QGQV GG                  F N     LP+  D+ + Q       NI G
Sbjct:   206 GQGQVVGGSVVGPLMASGPVVIMAASFGNAAYERLPLEEDDQEEQTAGAVANNIDG 261

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2037350 ESC "ESCAROLA" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 65/174 (37%), Positives = 92/174 (52%)

Query:    51 SSSTPENATRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFA 110
             SSS P    ++PRGRPPGSKNK KPP+++TRD    +A++  +LE+S GADI++SV T+A
Sbjct:    80 SSSAPG---KRPRGRPPGSKNKAKPPIIVTRD--SPNALRSHVLEVSPGADIVESVSTYA 134

Query:   111 RRNHAGISLVSASGSVSHVTLRQPISHAHS---------LSLHGPFHXXXXXXXXXXXXX 161
             RR   G+S++  +G+VS+VTLRQP++  +          ++LHG F              
Sbjct:   135 RRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPA 194

Query:   162 XXXXXXFGVTLAGAQGQVFGGIXXXXXXXXXXXXXXXXXFLNPLVHSLPISSDE 215
                     + LAG QGQV GG                  F N +   LPI  +E
Sbjct:   195 PPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLPIEEEE 248

GO:0005737 "cytoplasm" evidence=ISM

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006325 "chromatin organization" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0003680 "AT DNA binding" evidence=IDA

TAIR|locus:2011701 SOB3 "SUPPRESSOR OF PHYB-4#3" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 66/197 (33%), Positives = 98/197 (49%)

Query:    54 TPENATRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRN 113
             T  +  ++PRGRPPGSKNKPKPPV++TRD    + ++  +LE+S+GADI++SV T+ARR 
Sbjct:    66 TSGSTGKRPRGRPPGSKNKPKPPVIVTRD--SPNVLRSHVLEVSSGADIVESVTTYARRR 123

Query:   114 HAGISLVSASGSVSHVTLRQPISHA-HS--------LSLHGPFHXXXXXXXXXXXXXXXX 164
               G+S++S +G+V++V+LRQP + A H         ++LHG F                 
Sbjct:   124 GRGVSILSGNGTVANVSLRQPATTAAHGANGGTGGVVALHGRFEILSLTGTVLPPPAPPG 183

Query:   165 XXXFGVTLAGAQGQVFGGIXXXXXXXXXXXXXXXXXFLNPLVHSLPISSDEGDNQVDAET 224
                  + L+G QGQV GG                  F N     LP+  + G+     E 
Sbjct:   184 SGGLSIFLSGVQGQVIGGNVVAPLVASGPVILMAASFSNATFERLPLEDEGGEGGEGGEV 243

Query:   225 KPNIVGASAATESCSSA 241
                  G      + SS+
Sbjct:   244 GEGGGGEGGPPPATSSS 260

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0009640 "photomorphogenesis" evidence=RCA;IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2099956 AGF2 "AT-hook protein of GA feedback 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 66/173 (38%), Positives = 90/173 (52%)

Query:    49 IESSSTPENATRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVIT 108
             +E  S   +  R+PRGRPPGSKNKPK PVV+T++  +S  ++  +LEI+ GAD+ +S+  
Sbjct:    77 VEPGSGSGSTGRRPRGRPPGSKNKPKSPVVVTKESPNS--LQSHVLEIATGADVAESLNA 134

Query:   109 FARRNHAGISLVSASGSVSHVTLRQPISHAHSLSLHGPFHXXXXXXXXXXXXXXXXXXXF 168
             FARR   G+S++S SG V++VTLRQP +    +SL G F                     
Sbjct:   135 FARRRGRGVSVLSGSGLVTNVTLRQPAASGGVVSLRGQFEILSMCGAFLPTSGSPAAAA- 193

Query:   169 GVT--LAGAQGQVFGGIXXXXXXXXXXXXXXXXXFLNPLVHSLPISSDEGDNQ 219
             G+T  LAGAQGQV GG                  F N     LPI  ++   Q
Sbjct:   194 GLTIYLAGAQGQVVGGGVAGPLIASGPVIVIAATFCNATYERLPIEEEQQQEQ 246

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006460 AHL20 "AT4G14465" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 68/205 (33%), Positives = 96/205 (46%)

Query:    56 ENATRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHA 115
             E   R+PRGRPPGSKNKPK P+ +TRD    +A++  +LEIS G+D+ D++  F+RR   
Sbjct:    63 EVVNRRPRGRPPGSKNKPKAPIFVTRD--SPNALRSHVLEISDGSDVADTIAHFSRRRQR 120

Query:   116 GISLVSASGSVSHVTLRQPISHAHSLSLHGPFHXXXXXXXXXXXXXXXXXXXFGVTLAGA 175
             G+ ++S +GSV++VTLRQ  +    +SL G F                      V LAG 
Sbjct:   121 GVCVLSGTGSVANVTLRQAAAPGGVVSLQGRFEILSLTGAFLPGPSPPGSTGLTVYLAGV 180

Query:   176 QGQVFGGIXXXXXXXXXXXXXXXXXFLNPLVHSLPISSDE---GDNQVDA--ETKPNIVG 230
             QGQV GG                  F N     LP+  +E   G  Q+    ++ P I  
Sbjct:   181 QGQVVGGSVVGPLLAIGSVMVIAATFSNATYERLPMEEEEDGGGSRQIHGGGDSPPRIGS 240

Query:   231 ASAATESCSSAGKTMPVYGVAAVAG 255
                     +  G  MP + +   AG
Sbjct:   241 NLPDLSGMAGPGYNMPPHLIPNGAG 265

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2084958 AHL19 "AT-hook motif nuclear-localized protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 70/211 (33%), Positives = 101/211 (47%)

Query:    56 ENATRKPRGRPPGSKNKPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNHA 115
             E  TR+PRGRP GSKNKPKPP+ +TRD    +A+K  ++EI++G D+I+++ TFARR   
Sbjct:    76 EAPTRRPRGRPAGSKNKPKPPIFVTRD--SPNALKSHVMEIASGTDVIETLATFARRRQR 133

Query:   116 GISLVSASGSVSHVTLRQPISHAHS--------LSLHGPFHXXXXXXXXXXXXXXXXXXX 167
             GI ++S +G+V++VTLRQP + A +        L+L G F                    
Sbjct:   134 GICILSGNGTVANVTLRQPSTAAVAAAPGGAAVLALQGRFEILSLTGSFLPGPAPPGSTG 193

Query:   168 FGVTLAGAQGQVFGGIXXXXXXXXXXXXXXXXXFLNPLVHSLPISSDE----GDNQVDAE 223
               + LAG QGQV GG                  F N     LP+  +E    G       
Sbjct:   194 LTIYLAGGQGQVVGGSVVGPLMAAGPVMLIAATFSNATYERLPLEEEEAAERGGGGGSGG 253

Query:   224 TKPNIVGASAATESCSSAG----KTMPVYGV 250
               P  +G   +  S  + G    + +PVY +
Sbjct:   254 VVPGQLGGGGSPLSSGAGGGDGNQGLPVYNM 284

GO:0005737 "cytoplasm" evidence=ISM

GO:0050832 "defense response to fungus" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	1e-26
cd11378	113	cd11378, DUF296, Domain of unknown function found	2e-19
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	4e-04

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  100 bits (251), Expect = 1e-26
 Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 12/123 (9%)

Query: 89  MKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHA---HSLSLHG 145
            +P +L +  G D+++S+  FAR+   G +++S  G+VS+VTLRQP   A     ++L G
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 146 PFHLLSLSGSFYDSSSSSSPSSFG---VTLAGAQGQVFGG-IVAGKVTAASKVVVVAATF 201
            F +LSLSG+      S      G   V+LA   GQV GG +  G V A  +VVV   +F
Sbjct: 61  RFEILSLSGTI-----SPGGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSF 115

Query: 202 LNP 204
            N 
Sbjct: 116 ENA 118

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score = 81.1 bits (201), Expect = 2e-19
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 5/115 (4%)

Query: 90  KPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHA---HSLSLHGP 146
           +P +L +  G D+++S+  FAR      +++S  G+VS+ TLR P        +++  G 
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 147 FHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATF 201
             +LSLSG+        S     V+LA + G+V GG + G + A + V VV    
Sbjct: 61  LEILSLSGNISPDDGKPSG-HLHVSLADSDGRVIGGHLLGALVAGT-VEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 9/104 (8%)

Query: 99  GADIIDSVITFARRNHAGISLVSASGSVSHVTLR---QPISHAHSLSLHGPFHLLSLSGS 155
           G D+   +  FA +     ++V+A G++    LR          ++ ++ P  +LSL G+
Sbjct: 19  GEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGN 78

Query: 156 FYDSSSSSSPS-SFGVTLAGAQGQVFGG-IVAGKVTAASKVVVV 197
                +   P       L    G   GG ++ G+V   ++V + 
Sbjct: 79  I----ALDDPFVHLHAALGDENGITLGGHLLEGEVFPTAEVFIR 118

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.95
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.92
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	91.44
smart00384	26	AT_hook DNA binding domain with preference for A/T	81.62

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.95  E-value=2.6e-28  Score=198.66  Aligned_cols=118  Identities=27%  Similarity=0.408  Sum_probs=100.9

Q ss_pred             ceEEEEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCC--CCCcccccccceeEEEeeeceecCCCCCCCC
Q 037008           89 MKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPI--SHAHSLSLHGPFHLLSLSGSFYDSSSSSSPS  166 (270)
Q Consensus        89 m~phVLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~--s~~~tvtleG~FEILSLSGT~s~~~~~~~~~  166 (270)
                      ||+|++||++||||+++|.+||+++++..++++++|+|++|+|++++  ..+.+.+++|+|||+||+|||...+. .++.
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g-~~~~   79 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG-KPFV   79 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT-EEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC-CCcc
Confidence            79999999999999999999999999988888999999999999984  34467899999999999999998433 3578


Q ss_pred             eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceee
Q 037008          167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHS  208 (270)
Q Consensus       167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~R  208 (270)
                      |||++|+|.+|+|+||||..+.+ ..++||++-.+....|+|
T Consensus        80 HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~~~  120 (120)
T PF03479_consen   80 HLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINFTR  120 (120)
T ss_dssp             EEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEEEE
T ss_pred             eEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCccccC
Confidence            99999999999999999995555 445777777777777776

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.92  E-value=2.6e-24  Score=182.59  Aligned_cols=122  Identities=18%  Similarity=0.252  Sum_probs=114.1

Q ss_pred             CCceEEEEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCC---CcccccccceeEEEeeeceecCCCCC
Q 037008           87 SAMKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISH---AHSLSLHGPFHLLSLSGSFYDSSSSS  163 (270)
Q Consensus        87 ~~m~phVLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~---~~tvtleG~FEILSLSGT~s~~~~~~  163 (270)
                      +.-|.+++||++|+|+++.|.+||+++++..++++|+|++++++||+++.+   +.++++.++|||+||.|||..++   
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---   83 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---   83 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence            346889999999999999999999999998899999999999999999953   46789999999999999999999   


Q ss_pred             CCCeeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCC
Q 037008          164 SPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPIS  212 (270)
Q Consensus       164 ~~~hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e  212 (270)
                      ++.|||++|++++|+++||||.++++.. ++||+|-.+....+.|.+|+
T Consensus        84 p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~  131 (141)
T COG1661          84 PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDP  131 (141)
T ss_pred             CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCC
Confidence            5889999999999999999999999888 79999999999999999997

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=91.44  E-value=0.077  Score=28.87  Aligned_cols=13  Identities=38%  Similarity=0.792  Sum_probs=4.2

Q ss_pred             CCCCCCCCCCCCC
Q 037008           60 RKPRGRPPGSKNK   72 (270)
Q Consensus        60 kr~RGRPpGSknK   72 (270)
                      +|+||||+.+..|
T Consensus         1 ~r~RGRP~k~~~~   13 (13)
T PF02178_consen    1 KRKRGRPRKNAKK   13 (13)
T ss_dssp             S--SS--TT----
T ss_pred             CCcCCCCccccCC
Confidence            5899999877654

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=81.62  E-value=0.97  Score=28.98  Aligned_cols=15  Identities=27%  Similarity=0.636  Sum_probs=11.3

Q ss_pred             CCCCCCCCCCCCCCC
Q 037008           60 RKPRGRPPGSKNKPK   74 (270)
Q Consensus        60 kr~RGRPpGSknKpk   74 (270)
                      +|+||||+..++...
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            589999987766543

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	1e-17
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	3e-16
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	2e-14
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	5e-08
3htn_A	149	Putative DNA binding protein; DUF269 family protei	3e-07
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	6e-06

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score = 76.6 bits (188), Expect = 1e-17
 Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 9/140 (6%)

Query: 72  KPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFARRNH-AGISLVSASGSVSHVT 130
                + ++      S  +   L +  G ++   +  F ++N      +   +GS++ V 
Sbjct: 3   GDPNSMTVSHHNA--STARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVA 60

Query: 131 LRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGGIVAGKVTA 190
           LR       + SL G F ++SL+G+        +     + ++   G + GG +    T 
Sbjct: 61  LRYAGQE-ATTSLTGTFEVISLNGTL-----ELTGEHLHLAVSDPYGVMLGGHMMPGCTV 114

Query: 191 ASKVVVVAATFLNPLVHSLP 210
            + + +V            P
Sbjct: 115 RTTLELVIGELPALTFSRQP 134

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 72.7 bits (178), Expect = 3e-16
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 89  MKPVILEISAGADIIDSVITFARRNH-AGISLVSASGSVSHVTLRQPISHAHSLSLHGPF 147
           +  + L ++ G D+   ++   +++     S+ S  G +S + +R   S   +L +  PF
Sbjct: 2   IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPF 60

Query: 148 HLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVH 207
            +LSLSG+      +       + +A AQG+V+GG +       +   ++   +      
Sbjct: 61  EILSLSGTL-----TYQHCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFT 115

Query: 208 SLP 210
              
Sbjct: 116 REF 118

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 68.1 bits (166), Expect = 2e-14
 Identities = 17/114 (14%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 87  SAMKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHA---HSLSL 143
           S  +  +  +  G +++  +  F ++     ++++  G++ +  +   +        + L
Sbjct: 7   SLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPL 66

Query: 144 HGPFHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVV 197
            G + L+SL G+              V+L   +G VFGG +       +++ + 
Sbjct: 67  KGSYELISLIGNVSLKDGEPFV-HAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ 119

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 50.0 bits (119), Expect = 5e-08
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 90  KPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLR---QPISHAHSLSLHGP 146
           K  +L +  G D++  +  F        + +SA G+V    +    Q         L  P
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 147 FHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVA 198
             +LSLSG+   S   S P      L G  G+V+GG +      A +V V+ 
Sbjct: 70  LEILSLSGNV--SMKDSKPFCHIHVLLGKDGEVYGGHLFSAEVFACEVFVLP 119

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 16/109 (14%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 92  VILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLR---QPISHAHSLSLHGPFH 148
            I+ I+   +I+ ++  F +        ++  G++  +TLR            +      
Sbjct: 18  YIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQME 77

Query: 149 LLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGG-IVAGKVTAASKVVV 196
           + +L+G+   S +        +T+  +      G +++     A + VV
Sbjct: 78  ISNLTGNI-SSMNEQVYLHLHITVGRSDYSALAGHLLSAIQNGAGEFVV 125

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 44.2 bits (104), Expect = 6e-06
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 90  KPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLR--QPISHAHSLSLHGPF 147
              ++ +  G +++ ++   AR  H   +     G +S  T               +   
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 148 HLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGG-IVAGKVTAASKVVVV 197
            + +++GS        S      T+     Q  GG ++   V   S  + V
Sbjct: 73  EMANMTGSIAWKEGKPSI-HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITV 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.97
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.97
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.96
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.96
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.95
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.92
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	97.64

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.97  E-value=3.8e-30  Score=214.12  Aligned_cols=120  Identities=20%  Similarity=0.341  Sum_probs=110.2

Q ss_pred             CceEEEEEeCCCChHHHHHHHHHHhcCc-eEEEEeeeceeeeEEEecCCCCCcccccccceeEEEeeeceecCCCCCCCC
Q 037008           88 AMKPVILEISAGADIIDSVITFARRNHA-GISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSSPS  166 (270)
Q Consensus        88 ~m~phVLrL~pGeDIvesI~~fa~r~~~-aicVLSa~GaVSnVTLR~p~s~~~tvtleG~FEILSLSGT~s~~~~~~~~~  166 (270)
                      .|++|++||++||||+++|.+||+++++ ++||++++|++++++||+++... +++++|+|||+||+|||+++     ..
T Consensus         1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-----~~   74 (142)
T 2p6y_A            1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-----HC   74 (142)
T ss_dssp             CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-----CE
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-----CC
Confidence            3899999999999999999999999996 79999999999999999999864 67899999999999999996     36


Q ss_pred             eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCC
Q 037008          167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISS  213 (270)
Q Consensus       167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~  213 (270)
                      |||++++|+||+|+||||++++++.+++||++..|.+..|+|+||++
T Consensus        75 HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e  121 (142)
T 2p6y_A           75 HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDPN  121 (142)
T ss_dssp             EEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEETT
T ss_pred             EEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCCC
Confidence            99999999999999999987676688899999999999999999875

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.97  E-value=5.5e-30  Score=215.91  Aligned_cols=122  Identities=20%  Similarity=0.338  Sum_probs=113.1

Q ss_pred             CCCceEEEEEeCCCChHHHHHHHHHHhcCc-eEEEEeeeceeeeEEEecCCCCCcccccccceeEEEeeeceecCCCCCC
Q 037008           86 SSAMKPVILEISAGADIIDSVITFARRNHA-GISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSS  164 (270)
Q Consensus        86 ~~~m~phVLrL~pGeDIvesI~~fa~r~~~-aicVLSa~GaVSnVTLR~p~s~~~tvtleG~FEILSLSGT~s~~~~~~~  164 (270)
                      .+.+|+|++||++||||+++|.+||+++++ ++||++++|+|++++||+++... +++|+|+|||+||+|||++.     
T Consensus        15 ~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-----   88 (154)
T 2hx0_A           15 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT-----   88 (154)
T ss_dssp             CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT-----
T ss_pred             CCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC-----
Confidence            788999999999999999999999999996 88999999999999999999864 67899999999999999996     


Q ss_pred             CCeeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCC
Q 037008          165 PSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISS  213 (270)
Q Consensus       165 ~~hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~  213 (270)
                      ..||||+|+|++|+|+||||++++++.+++||++..|.+..|+|+||++
T Consensus        89 ~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e  137 (154)
T 2hx0_A           89 GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAI  137 (154)
T ss_dssp             EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTT
T ss_pred             CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecCCC
Confidence            2699999999999999999988776668899999999999999999875

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.96  E-value=3e-29  Score=208.14  Aligned_cols=120  Identities=14%  Similarity=0.324  Sum_probs=108.3

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCCC---cccccccceeEEEeeeceecCCCCCCCC
Q 037008           90 KPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHA---HSLSLHGPFHLLSLSGSFYDSSSSSSPS  166 (270)
Q Consensus        90 ~phVLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~~---~tvtleG~FEILSLSGT~s~~~~~~~~~  166 (270)
                      ++|++||++||||+++|.+||+++++..++++++|++++|+||+++...   ..++++|+|||+||+|||++.+.. ++.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~-p~~   88 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE-PFV   88 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC-cee
Confidence            7999999999999999999999999876667999999999999997653   457899999999999999997553 478


Q ss_pred             eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCC
Q 037008          167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISS  213 (270)
Q Consensus       167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~  213 (270)
                      |||++++|+||+|+||||.+.+ .. ++||++..|.+..|+|+| ++
T Consensus        89 HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~-~e  132 (143)
T 2dt4_A           89 HAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP-TK  132 (143)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC-CT
T ss_pred             eEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC-CC
Confidence            9999999999999999999888 55 799999999999999999 54

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.96  E-value=2.5e-29  Score=209.23  Aligned_cols=120  Identities=20%  Similarity=0.232  Sum_probs=108.8

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCCC---cccccccceeEEEeeeceecCCCCCCCC
Q 037008           90 KPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHA---HSLSLHGPFHLLSLSGSFYDSSSSSSPS  166 (270)
Q Consensus        90 ~phVLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~~---~tvtleG~FEILSLSGT~s~~~~~~~~~  166 (270)
                      ++|++||++||||+++|.+||+++++..++++++|+|++++||+++...   .+++++|+|||+||+|||++.++. ++.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~-p~~   88 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK-PFC   88 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC-cee
Confidence            7999999999999999999999999765556999999999999998764   467899999999999999997553 478


Q ss_pred             eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCC
Q 037008          167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISS  213 (270)
Q Consensus       167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~  213 (270)
                      ||||+|+ .+|+|+||||.+.+|  .++||++.+|.+..|+|+||++
T Consensus        89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e  132 (146)
T 2h6l_A           89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ  132 (146)
T ss_dssp             EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred             eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence            9999999 999999999998885  6899999999999999999975

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.95  E-value=4.5e-28  Score=203.29  Aligned_cols=121  Identities=11%  Similarity=0.171  Sum_probs=108.8

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCCC---cccccccceeEEEeeeceecCCCCCCCC
Q 037008           90 KPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHA---HSLSLHGPFHLLSLSGSFYDSSSSSSPS  166 (270)
Q Consensus        90 ~phVLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~~---~tvtleG~FEILSLSGT~s~~~~~~~~~  166 (270)
                      |.+++||++||||+++|.+||+++++..++++++|++++|+||+++...   ..++++|+|||+||+|||++.++. ++.
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~-p~~   94 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQ-VYL   94 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCC-ceE
Confidence            7899999999999999999999999877777999999999999987642   467899999999999999997553 578


Q ss_pred             eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCC
Q 037008          167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISS  213 (270)
Q Consensus       167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~  213 (270)
                      |||++|+|++|+|+||||..+ .+..++||+|..+.. .|.|.+|++
T Consensus        95 HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~R~~D~~  139 (149)
T 3htn_A           95 HLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RISRTYNPD  139 (149)
T ss_dssp             EEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCEEEEETT
T ss_pred             EEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeEEeeCCc
Confidence            999999999999999999987 666779999999987 899999975

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.92  E-value=3.5e-25  Score=185.12  Aligned_cols=121  Identities=12%  Similarity=0.119  Sum_probs=105.8

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCCC---cccccccceeEEEeeeceecCCCCCCCC
Q 037008           90 KPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHA---HSLSLHGPFHLLSLSGSFYDSSSSSSPS  166 (270)
Q Consensus        90 ~phVLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~~---~tvtleG~FEILSLSGT~s~~~~~~~~~  166 (270)
                      +.+++||++|+||+++|.+||+++++..++++++|++++++||+++...   ...+++ +|||+||+||+++.++. ++.
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG~-p~~   90 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEGK-PSI   90 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCCC-ceE
Confidence            5689999999999999999999999877777999999999999987642   345788 89999999999986653 578


Q ss_pred             eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCC
Q 037008          167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISS  213 (270)
Q Consensus       167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~  213 (270)
                      |||++++|.+|+|+||||....+...++||++..+. ..|.|.+|++
T Consensus        91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~-~~~~R~~D~~  136 (147)
T 3hwu_A           91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP-QRLDRFVDPE  136 (147)
T ss_dssp             EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES-SCCBEEEETT
T ss_pred             EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC-CeEEEEECCc
Confidence            999999999999999999888666558999998765 6999999874

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=97.64  E-value=2.4e-05  Score=48.55  Aligned_cols=17  Identities=59%  Similarity=1.042  Sum_probs=14.9

Q ss_pred             CCCCCCCCCCCCCCCCC
Q 037008           57 NATRKPRGRPPGSKNKP   73 (270)
Q Consensus        57 ~~~kr~RGRPpGSknKp   73 (270)
                      ...|||||||.|||||.
T Consensus         2 ptpKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            2 PTPKRPRGRPKGSKNKG   18 (26)
T ss_dssp             CSCCCCSSCCTTCCCCS
T ss_pred             CCCcCCCCCcCcccccC
Confidence            35699999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	3e-17
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	3e-11

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 74.2 bits (182), Expect = 3e-17
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 85  DSSAMKPVILEISAGADIIDSVITFARRNHA-GISLVSASGSVSHVTLRQPISHAHSLSL 143
           ++S  +   L +  G ++   +  F ++N      +   +GS++ V LR     A   SL
Sbjct: 2   NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEAT-TSL 60

Query: 144 HGPFHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLN 203
            G F ++SL+G+        +     + ++   G + GG +    T  + + +V      
Sbjct: 61  TGTFEVISLNGTL-----ELTGEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPA 115

Query: 204 PLVHSLP 210
                 P
Sbjct: 116 LTFSRQP 122

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 57.6 bits (139), Expect = 3e-11
 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 87  SAMKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLR---QPISHAHSLSL 143
              K  +L +  G D++  +  F        + +SA G+V    +    Q         L
Sbjct: 7   EVGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKEL 66

Query: 144 HGPFHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLN 203
             P  +LSLSG+     S        +   G  G+V+GG +      A +V V+      
Sbjct: 67  MEPLEILSLSGNVSMKDSKPFCHIHVL--LGKDGEVYGGHLFSAEVFACEVFVL--PLSG 122

Query: 204 PLVHSLP 210
                  
Sbjct: 123 EAPERAF 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.96
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.93

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=2.8e-29  Score=205.86  Aligned_cols=123  Identities=19%  Similarity=0.334  Sum_probs=114.4

Q ss_pred             CCCceEEEEEeCCCChHHHHHHHHHHhcCc-eEEEEeeeceeeeEEEecCCCCCcccccccceeEEEeeeceecCCCCCC
Q 037008           86 SSAMKPVILEISAGADIIDSVITFARRNHA-GISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSS  164 (270)
Q Consensus        86 ~~~m~phVLrL~pGeDIvesI~~fa~r~~~-aicVLSa~GaVSnVTLR~p~s~~~tvtleG~FEILSLSGT~s~~~~~~~  164 (270)
                      .+..|.|++||+|||||+++|.+||+++++ ++||++++|++++|+|++|+.. ....++|+|||+||+|||.+.+.   
T Consensus         3 ~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~-~~~~~~g~~Ei~sl~G~I~~~~~---   78 (136)
T d2hx0a1           3 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELTGE---   78 (136)
T ss_dssp             CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETTEE---
T ss_pred             CCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCC-CcEEecCcEEEEEEEEEeccCCC---
Confidence            567899999999999999999999999995 8999999999999999999876 45679999999999999998764   


Q ss_pred             CCeeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCCC
Q 037008          165 PSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISSD  214 (270)
Q Consensus       165 ~~hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~~  214 (270)
                        |||++|+|.+|+|+||||.+++++++++||++..|.+..|+|.+|++-
T Consensus        79 --HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~~D~~t  126 (136)
T d2hx0a1          79 --HLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAIS  126 (136)
T ss_dssp             --EEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTTT
T ss_pred             --eEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEccCCCC
Confidence              899999999999999999999999999999999999999999998753

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=4.5e-26  Score=185.61  Aligned_cols=120  Identities=21%  Similarity=0.239  Sum_probs=107.2

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCCC---cccccccceeEEEeeeceecCCCCCCCC
Q 037008           90 KPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHA---HSLSLHGPFHLLSLSGSFYDSSSSSSPS  166 (270)
Q Consensus        90 ~phVLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~~---~tvtleG~FEILSLSGT~s~~~~~~~~~  166 (270)
                      |.+++||++||||+++|.+||+++++..++++++|++++++||+++...   ..+.++|+|||+||+|||...++. ++.
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~-p~~   88 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK-PFC   88 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCC-cEE
Confidence            8999999999999999999999999988899999999999999876543   457899999999999999987765 588


Q ss_pred             eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCC
Q 037008          167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISS  213 (270)
Q Consensus       167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~  213 (270)
                      |+|+++++ +|+++||||..+.+.+  +++++-++.+..|.|.||++
T Consensus        89 HlH~~~~~-~g~~~gGHl~~~~v~~--~e~~i~~~~~~~~~R~~D~~  132 (138)
T d2h6la1          89 HIHVLLGK-DGEVYGGHLFSAEVFA--CEVFVLPLSGEAPERAFDEQ  132 (138)
T ss_dssp             EEEEEEEE-BTEEEEEEEEEEEEEE--EEEEEEECBSCCCBEEECTT
T ss_pred             EEEEEECC-CCCEEEEEeCccEEEE--EEEEEEEecCCceEEecCCc
Confidence            99999997 7999999999887763  57777799999999999874