Citrus Sinensis ID: 037013

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWESSLDQFS
Secondary Structure (PSIPRED)
ccccccEEEEEEccccEEEEEEEcccccEEEEcccHHHHcccEEEEEccccEEEEccccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEEcccccccccccccEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEccccccEEEEEEEcccccEEEEcccHHHHHcccEEEEEccccEEEEccccHHEEEEEEccccEEEEEHHcccEEEcccccccccccHHHccccEEEEccccEEEEccccccHHHHHHHc
Coil and Loop (DISEMBL)
mdqdsvlhkggcrcrklrwrvraprsveawkcncsdcsmrgnvhftvapenfellgnseefltthtfgtgtakhVFCKVCgitsfyvprgtpngvavtfrgvdpgtlsHVEIKhydghnwessldqfs
Flexible Loop (DISEMBL)
mdqdsvlhkggcrcrklrwrvraprsveawkcncsdcsMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIkhydghnwessldqfs
Low Complexity Region (SEG)
MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWESSLDQFS
Disordered region (IsUnstruct)
******LHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNW********
Disordered Region (DISOPRED)
****SVL*KGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWE*******
Disordered Region (DISEMBL)
MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWESSLDQFS
Disordered Region (DISPRO)
***DSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWESSLDQFS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWESSLDQFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q9CXS4	252	Centromere protein V OS=M	yes	no	0.960	0.488	0.395	1e-21
Q7Z7K6	275	Centromere protein V OS=H	yes	no	0.960	0.447	0.387	3e-21

>sp|Q9CXS4|CENPV_MOUSE Centromere protein V OS=Mus musculus GN=Cenpv PE=2 SV=2

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 1/124 (0%)

Query: 3   QDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFL 62
           Q  V H GGC C  +R+ V A   +  + CNCS C  + N HF V    F+LL  +E  +
Sbjct: 120 QGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-I 178

Query: 63  TTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWES 122
           TT+TF T  A+H FCK CG+ SFY PR  P G  +    +D GT+  V  + ++G +WE 
Sbjct: 179 TTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSVVTEEFNGSDWER 238

Query: 123 SLDQ 126
           ++ +
Sbjct: 239 AMKE 242

Required for distribution of pericentromeric heterochromatin in interphase nuclei and for centromere formation and organization, chromosome alignment and cytokinesis.
Mus musculus (taxid: 10090)

>sp|Q7Z7K6|CENPV_HUMAN Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 1/124 (0%)

Query: 3   QDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFL 62
           Q  V H GGC C  +R+ V A   +  + CNCS C  + N HF V    F+LL  +E  +
Sbjct: 143 QGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAEH-I 201

Query: 63  TTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWES 122
           TT+TF T  A+H FCK CG+ SFY PR  P G  +    +D GT+  +  + ++G +WE 
Sbjct: 202 TTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSMVTEEFNGSDWEK 261

Query: 123 SLDQ 126
           ++ +
Sbjct: 262 AMKE 265

Required for distribution of pericentromeric heterochromatin in interphase nuclei and for centromere formation and organization, chromosome alignment and cytokinesis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
224069242	137	predicted protein [Populus trichocarpa]	0.984	0.919	0.738	5e-51
224069230	137	predicted protein [Populus trichocarpa]	0.984	0.919	0.706	1e-48
118482086	137	unknown [Populus trichocarpa]	0.984	0.919	0.666	1e-46
356569855	137	PREDICTED: centromere protein V-like [Gl	0.984	0.919	0.666	2e-46
298204850	201	unnamed protein product [Vitis vinifera]	0.960	0.611	0.674	3e-46
356539816	137	PREDICTED: centromere protein V-like [Gl	0.984	0.919	0.666	5e-46
225451350	141	PREDICTED: centromere protein V-like [Vi	0.960	0.872	0.674	1e-45
224069238	137	predicted protein [Populus trichocarpa]	0.984	0.919	0.658	2e-45
118481980	137	unknown [Populus trichocarpa]	0.984	0.919	0.658	3e-45
388501428	139	unknown [Lotus japonicus]	0.976	0.899	0.648	5e-45

>gi|224069242|ref|XP_002302935.1| predicted protein [Populus trichocarpa] gi|222844661|gb|EEE82208.1| predicted protein [Populus trichocarpa]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 106/126 (84%)

Query: 1   MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 60
           M+ D V+H GGC CR++RWRV+AP SV AW CNCSDCSMRGN HF V  E F+LLG+S+E
Sbjct: 1   MESDMVIHNGGCHCRRVRWRVQAPSSVVAWNCNCSDCSMRGNTHFIVPSEKFDLLGDSKE 60

Query: 61  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNW 120
           FLTT+TFGT TAKH FCK CGITSFY+PR  P+GVAVTFR VDPGTL+HVEIKHYDG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKFCGITSFYIPRSNPDGVAVTFRCVDPGTLTHVEIKHYDGRNW 120

Query: 121 ESSLDQ 126
           ESS +Q
Sbjct: 121 ESSYNQ 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069230|ref|XP_002302932.1| predicted protein [Populus trichocarpa] gi|222844658|gb|EEE82205.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 104/126 (82%)

Query: 1   MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 60
           M+ D V+H GGC CR++RWRV+AP SV AW CNCSDCSMRGN+ F V  E FELLG+S+E
Sbjct: 1   MESDMVIHNGGCHCRRVRWRVQAPSSVVAWNCNCSDCSMRGNIQFIVPSEKFELLGDSKE 60

Query: 61  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNW 120
           FLTT+TFGT TAKH FCK CGITSFYVPR  P+GV++T R VDPGTL+HVEIKH+DG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKFCGITSFYVPRSHPDGVSITCRCVDPGTLTHVEIKHFDGQNW 120

Query: 121 ESSLDQ 126
           E S +Q
Sbjct: 121 ERSYNQ 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482086|gb|ABK92974.1| unknown [Populus trichocarpa]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 103/126 (81%)

Query: 1   MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 60
           M+ D V+H GGC CR++RWRV+AP SV AW CNCS CSMR ++ F V  E FELLG+S+E
Sbjct: 1   MESDMVMHYGGCHCRRVRWRVQAPSSVVAWNCNCSICSMRASIQFIVPSEKFELLGDSKE 60

Query: 61  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNW 120
           FLTT+TFGT TAKH FCK CGITSFYVPR  P+GV++T+R VDPGTL+HVEIK++DG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKFCGITSFYVPRSNPDGVSITYRCVDPGTLTHVEIKNFDGQNW 120

Query: 121 ESSLDQ 126
           E S ++
Sbjct: 121 ERSYNE 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569855|ref|XP_003553110.1| PREDICTED: centromere protein V-like [Glycine max]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 101/126 (80%)

Query: 1   MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 60
           MD + V+H GGC C+ +RW+V AP SV AW CNCS C MR N HF V  +NFELLG+SE+
Sbjct: 1   MDAEKVVHTGGCHCKSVRWKVVAPSSVVAWDCNCSTCYMRANTHFIVPADNFELLGDSEK 60

Query: 61  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNW 120
           FLTT+TF T TAKH FCK+CGITSFY PR  P+GVAVTFR VDPGTL+HVEI+H+DG NW
Sbjct: 61  FLTTYTFATHTAKHTFCKICGITSFYHPRSNPDGVAVTFRCVDPGTLTHVEIRHFDGKNW 120

Query: 121 ESSLDQ 126
           +S+ +Q
Sbjct: 121 DSAYNQ 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204850|emb|CBI34157.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 100/123 (81%)

Query: 1   MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 60
           MD   V+H GGC CR++RW+V AP SV  WKC+CS+C MRGN HF V  E FELLG+S+E
Sbjct: 61  MDSKKVVHSGGCHCRRVRWKVEAPASVLVWKCDCSNCFMRGNAHFIVPAEKFELLGDSKE 120

Query: 61  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNW 120
           FLTT+TFGT TAKH FCK+CGITSFY+PR   +GVAV+F  VDPGTL+HVEIK++DG NW
Sbjct: 121 FLTTYTFGTHTAKHTFCKICGITSFYIPRSNQDGVAVSFMCVDPGTLTHVEIKNFDGKNW 180

Query: 121 ESS 123
           E+S
Sbjct: 181 ENS 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539816|ref|XP_003538389.1| PREDICTED: centromere protein V-like [Glycine max]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 100/126 (79%)

Query: 1   MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 60
           MD + V+H GGC C+ +RW+V AP SV AW CNCS C MR N HF V   NFELLG+SE+
Sbjct: 1   MDVEKVVHTGGCHCKSVRWKVVAPSSVVAWDCNCSTCYMRANTHFIVPANNFELLGDSEK 60

Query: 61  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNW 120
           FLTT+TFGT TAKH FCK+CGITSFY PR  P+GVAVTFR VDPGTL+HVEI+++DG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKICGITSFYCPRSNPDGVAVTFRCVDPGTLTHVEIRYFDGKNW 120

Query: 121 ESSLDQ 126
           +S+  Q
Sbjct: 121 DSAYTQ 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451350|ref|XP_002279711.1| PREDICTED: centromere protein V-like [Vitis vinifera]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 100/123 (81%)

Query: 1   MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 60
           MD   V+H GGC CR++RW+V AP SV  WKC+CS+C MRGN HF V  E FELLG+S+E
Sbjct: 1   MDSKKVVHSGGCHCRRVRWKVEAPASVLVWKCDCSNCFMRGNAHFIVPAEKFELLGDSKE 60

Query: 61  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNW 120
           FLTT+TFGT TAKH FCK+CGITSFY+PR   +GVAV+F  VDPGTL+HVEIK++DG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKICGITSFYIPRSNQDGVAVSFMCVDPGTLTHVEIKNFDGKNW 120

Query: 121 ESS 123
           E+S
Sbjct: 121 ENS 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069238|ref|XP_002302934.1| predicted protein [Populus trichocarpa] gi|222844660|gb|EEE82207.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 102/126 (80%)

Query: 1   MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 60
           M+ D V+H GGC CR++RWRV+AP SV A  CNCS CSMR ++ F V  E FELLG+S+E
Sbjct: 1   MESDMVMHYGGCHCRRVRWRVQAPSSVVALNCNCSICSMRASIQFIVPSEKFELLGDSKE 60

Query: 61  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNW 120
           FLTT+TFGT TAKH FCK CGITSFYVPR  P+GV++T+R VDPGTL+HVEIK++DG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKFCGITSFYVPRSNPDGVSITYRCVDPGTLTHVEIKNFDGQNW 120

Query: 121 ESSLDQ 126
           E S ++
Sbjct: 121 ERSYNE 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481980|gb|ABK92921.1| unknown [Populus trichocarpa]

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 100/126 (79%)

Query: 1   MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 60
           M+ D V+H GGC CR++RWRV+AP SV A  CNCS CSMR ++ F V  E FELLG+S+E
Sbjct: 1   MESDMVMHYGGCHCRRVRWRVQAPSSVVALNCNCSICSMRASIQFIVPSEKFELLGDSKE 60

Query: 61  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNW 120
           FLTT+TFGT TAKH FCK CGITSFYVPR  P+G ++T R VDPGTL+HVEIK++DG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKFCGITSFYVPRANPDGFSITLRCVDPGTLTHVEIKNFDGQNW 120

Query: 121 ESSLDQ 126
           E S +Q
Sbjct: 121 ERSYNQ 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501428|gb|AFK38780.1| unknown [Lotus japonicus]

 Score =  185 bits (469), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 101/125 (80%)

Query: 2   DQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEF 61
           + ++V+H GGC C+ +RW+V AP SV AW CNCS+C MR N HF V  ENFELLG+S +F
Sbjct: 4   ETETVVHNGGCHCKSVRWKVLAPSSVVAWDCNCSNCYMRANNHFVVPAENFELLGDSGKF 63

Query: 62  LTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWE 121
           +TT+TFGT TAKH FCK+CGITSFY PR  P+GVAV+FR VDPGTL+H+EI+H+DG NWE
Sbjct: 64  ITTYTFGTHTAKHTFCKICGITSFYYPRSNPDGVAVSFRCVDPGTLTHIEIRHFDGKNWE 123

Query: 122 SSLDQ 126
            S +Q
Sbjct: 124 RSYNQ 128

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2148221	135	AT5G16940 "AT5G16940" [Arabido	0.960	0.911	0.658	6.2e-46
UNIPROTKB|Q0C2K4	144	HNE_1321 "Putative uncharacter	0.898	0.798	0.474	3.1e-28
ZFIN|ZDB-GENE-060526-76	146	cenpv "centromere protein V" [	0.937	0.821	0.421	2.9e-25
DICTYBASE|DDB_G0291800	129	DDB_G0291800 "glutathione-depe	0.953	0.945	0.398	5.9e-25
UNIPROTKB|F1PH09	170	CENPV "Uncharacterized protein	0.960	0.723	0.403	1.1e-23
UNIPROTKB|J9PA58	184	CENPV "Uncharacterized protein	0.960	0.668	0.403	1.1e-23
UNIPROTKB|F1SDE3	154	CENPV "Uncharacterized protein	0.945	0.785	0.401	2.3e-23
UNIPROTKB|F1MSW5	155	CENPV "Uncharacterized protein	0.960	0.793	0.387	2.9e-23
UNIPROTKB|G3N1U1	263	CENPV "Uncharacterized protein	0.960	0.467	0.387	2.9e-23
MGI|MGI:1920389	252	Cenpv "centromere protein V" [	0.960	0.488	0.395	3.8e-23

TAIR|locus:2148221 AT5G16940 "AT5G16940" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 81/123 (65%), Positives = 99/123 (80%)

Query:     1 MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 60
             M+ + + H+GGC C K++WRV+A RSV AW CNCSDCSMRGNVHF V   NFELL +S++
Sbjct:     1 MESELIFHEGGCHCGKIKWRVKAARSVIAWSCNCSDCSMRGNVHFIVPSSNFELLDDSKD 60

Query:    61 FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNW 120
             F+TT+TFGT TAKH FCKVCGITSFY+PR  P+GVAVT + V  GTL+H+E+K YDG NW
Sbjct:    61 FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGVAVTVKCVKSGTLAHIEVKSYDGQNW 120

Query:   121 ESS 123
             E S
Sbjct:   121 EMS 123

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

UNIPROTKB|Q0C2K4 HNE_1321 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 55/116 (47%), Positives = 74/116 (63%)

Query:     8 HKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 67
             H GGC CR +R+ V+ P + E   CNC+ C+M GN+H  V    F LL   +  L+ +TF
Sbjct:    20 HSGGCHCRAVRFEVQLPEAFEVEDCNCTMCAMSGNIHVIVPASRFRLLQGKDN-LSQYTF 78

Query:    68 GTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWESS 123
              TG AKH+FCK CGI SFY+PR  P+GVAVT+R +D      V +  +DG NWE++
Sbjct:    79 NTGAAKHLFCKTCGIKSFYIPRSNPDGVAVTWRALDDWMDLKVTVVPFDGQNWEAN 134

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060526-76 cenpv "centromere protein V" [Danio rerio (taxid:7955)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 51/121 (42%), Positives = 71/121 (58%)

Query:     6 VLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTH 65
             V H GGC C  +R+ V +   +  + CNCS C+ + N HF V    F LL  S+  +T +
Sbjct:    12 VKHTGGCHCGAVRFEVWSAPDLHVFNCNCSICTKKQNRHFIVPKSQFTLLQGSDNIIT-Y 70

Query:    66 TFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWESSLD 125
             TF T  AKH FCK CG+ SFY PR  P+G  V    +DPGT++ V ++ + G NWE S+ 
Sbjct:    71 TFNTHMAKHTFCKTCGVQSFYTPRSNPDGFGVAPHCLDPGTVNSVTVEDFCGQNWEESMQ 130

Query:   126 Q 126
             +
Sbjct:   131 E 131

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

DICTYBASE|DDB_G0291800 DDB_G0291800 "glutathione-dependent formaldehyde-activating, GFA family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 49/123 (39%), Positives = 73/123 (59%)

Query:     2 DQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEF 61
             +Q  V H GGC C K+R+   AP+  E   CNCS C+ +G +H  V  + F+LL   E+ 
Sbjct:     3 EQQEVTHTGGCHCGKVRFEAVAPKDCEGIYCNCSMCTKKGIIHLIVTKDKFKLL-QGEDN 61

Query:    62 LTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWE 121
             L+ +TF T  AKH FC  CGI  +Y+ R  PN + V +R +D   ++ ++I ++DG NWE
Sbjct:    62 LSLYTFNTHIAKHYFCSTCGICPYYIARSHPNDIDVNYRCLDNFDITKIKISNFDGRNWE 121

Query:   122 SSL 124
               +
Sbjct:   122 DQV 124

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1PH09 CENPV "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 50/124 (40%), Positives = 71/124 (57%)

Query:     3 QDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFL 62
             Q  V H GGC C  +R+ V A   +  + CNCS C  + N HF V    F+LL  +E  +
Sbjct:    38 QGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-I 96

Query:    63 TTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWES 122
             TT+TF T  A+H FCK CG+ SFY PR  P G  +    +D GT+  V I+ ++G +WE 
Sbjct:    97 TTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSVVIEEFNGTDWEK 156

Query:   123 SLDQ 126
             ++ +
Sbjct:   157 AMKE 160

GO:0051233 "spindle midzone" evidence=IEA

GO:0033044 "regulation of chromosome organization" evidence=IEA

GO:0032467 "positive regulation of cytokinesis" evidence=IEA

GO:0031508 "centromeric heterochromatin assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001667 "ameboidal cell migration" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

UNIPROTKB|J9PA58 CENPV "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 50/124 (40%), Positives = 71/124 (57%)

Query:     3 QDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFL 62
             Q  V H GGC C  +R+ V A   +  + CNCS C  + N HF V    F+LL  +E  +
Sbjct:    52 QGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-I 110

Query:    63 TTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWES 122
             TT+TF T  A+H FCK CG+ SFY PR  P G  +    +D GT+  V I+ ++G +WE 
Sbjct:   111 TTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSVVIEEFNGTDWEK 170

Query:   123 SLDQ 126
             ++ +
Sbjct:   171 AMKE 174

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

UNIPROTKB|F1SDE3 CENPV "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 49/122 (40%), Positives = 70/122 (57%)

Query:     3 QDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFL 62
             Q  V H GGC C  +R+ V A   +  + CNCS C  + N HF V    F+LL  +E  +
Sbjct:    22 QGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-I 80

Query:    63 TTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWES 122
             TT+TF T  A+H FCK CG+ SFY PR  P G  +    +D GT+  V ++ ++G +WE 
Sbjct:    81 TTYTFNTHKAQHTFCKRCGVQSFYSPRSNPGGFGIAPHCLDEGTVRSVVVEEFNGSDWEK 140

Query:   123 SL 124
             ++
Sbjct:   141 AM 142

GO:0051233 "spindle midzone" evidence=IEA

GO:0033044 "regulation of chromosome organization" evidence=IEA

GO:0032467 "positive regulation of cytokinesis" evidence=IEA

GO:0031508 "centromeric heterochromatin assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001667 "ameboidal cell migration" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

UNIPROTKB|F1MSW5 CENPV "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 48/124 (38%), Positives = 71/124 (57%)

Query:     3 QDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFL 62
             Q  V H GGC C  +R+ V A   +  + CNCS C  + N HF V    F+LL  ++  +
Sbjct:    23 QGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNKHFIVPASRFKLLKGADS-I 81

Query:    63 TTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWES 122
             TT+TF T  A+H FCK CG+ SFY PR  P G  +    +D GT+  V ++ ++G +WE 
Sbjct:    82 TTYTFNTHKAQHTFCKRCGVQSFYSPRSNPGGFGIAPHCLDEGTVRSVVVEEFNGSDWEK 141

Query:   123 SLDQ 126
             ++ +
Sbjct:   142 AMKE 145

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

UNIPROTKB|G3N1U1 CENPV "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 48/124 (38%), Positives = 71/124 (57%)

Query:     3 QDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFL 62
             Q  V H GGC C  +R+ V A   +  + CNCS C  + N HF V    F+LL  ++  +
Sbjct:   131 QGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNKHFIVPASRFKLLKGADS-I 189

Query:    63 TTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWES 122
             TT+TF T  A+H FCK CG+ SFY PR  P G  +    +D GT+  V ++ ++G +WE 
Sbjct:   190 TTYTFNTHKAQHTFCKRCGVQSFYSPRSNPGGFGIAPHCLDEGTVRSVVVEEFNGSDWEK 249

Query:   123 SLDQ 126
             ++ +
Sbjct:   250 AMKE 253

GO:0051233 "spindle midzone" evidence=IEA

GO:0033044 "regulation of chromosome organization" evidence=IEA

GO:0032467 "positive regulation of cytokinesis" evidence=IEA

GO:0031508 "centromeric heterochromatin assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001667 "ameboidal cell migration" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

MGI|MGI:1920389 Cenpv "centromere protein V" [Mus musculus (taxid:10090)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 49/124 (39%), Positives = 70/124 (56%)

Query:     3 QDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFL 62
             Q  V H GGC C  +R+ V A   +  + CNCS C  + N HF V    F+LL  +E  +
Sbjct:   120 QGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-I 178

Query:    63 TTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWES 122
             TT+TF T  A+H FCK CG+ SFY PR  P G  +    +D GT+  V  + ++G +WE 
Sbjct:   179 TTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSVVTEEFNGSDWER 238

Query:   123 SLDQ 126
             ++ +
Sbjct:   239 AMKE 242

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO;ISS

GO:0001667 "ameboidal cell migration" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

GO:0031508 "centromeric heterochromatin assembly" evidence=ISO;ISS

GO:0032467 "positive regulation of cytokinesis" evidence=ISO;ISS

GO:0033044 "regulation of chromosome organization" evidence=ISO;ISS

GO:0034508 "centromere complex assembly" evidence=ISO;ISS

GO:0051233 "spindle midzone" evidence=ISO;ISS

GO:0051301 "cell division" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.4.1	LOW CONFIDENCE prediction!
4th Layer	4.4.1.22	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
COG3791	133	COG3791, COG3791, Uncharacterized conserved protei	2e-15
pfam04828	92	pfam04828, GFA, Glutathione-dependent formaldehyde	3e-04

>gnl|CDD|226314 COG3791, COG3791, Uncharacterized conserved protein [Function unknown]

 Score = 67.1 bits (164), Expect = 2e-15
 Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 8   HKGGCRCRKLRWRVRA-PRSVEAWKCNCSDCSMR-GNVHFTVAPENFELLGNSEEFLTTH 65
            +GGC C  +R+ V   P  V A  C+CSDC    G      A    + L      L T+
Sbjct: 4   IEGGCLCGAVRFEVEGDPGHVSA--CHCSDCRKASGAAFAAYAVVPRDAL-RGTRGLPTY 60

Query: 66  TFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGH--NWESS 123
            F +G+A   FC  CG   F+        V V    +D       +++ + G    W   
Sbjct: 61  YFSSGSAGRGFCPTCGSPLFWRGPDEDPFVGVNAGALDDPEFLPPQVQIFVGSKLPWLDI 120

Query: 124 LDQ 126
            D 
Sbjct: 121 ADD 123

Length = 133

>gnl|CDD|218282 pfam04828, GFA, Glutathione-dependent formaldehyde-activating enzyme

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 5/76 (6%)

Query: 32  CNCSDCSMRG----NVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYV 87
           C+C+DC        + +  V  E+       +  L  +          FC  CG   F  
Sbjct: 3   CHCTDCQKASGSAFSANAVVPAEDVTWTSGEDA-LKVYDDSGNGVSRYFCPNCGSPLFGR 61

Query: 88  PRGTPNGVAVTFRGVD 103
               P  V V    +D
Sbjct: 62  STRAPGLVIVPAGTLD 77

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
COG3791	133	Uncharacterized conserved protein [Function unknow	99.98
TIGR02820	182	formald_GSH S-(hydroxymethyl)glutathione synthase.	99.96
PRK05417	191	glutathione-dependent formaldehyde-activating enzy	99.96
KOG4192	134	consensus Uncharacterized conserved protein [Funct	99.91
PF04828	92	GFA: Glutathione-dependent formaldehyde-activating	99.91
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	92.29
PF13248	26	zf-ribbon_3: zinc-ribbon domain	91.71
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	90.64
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	88.7
PF02150	35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	87.83
smart00661	52	RPOL9 RNA polymerase subunit 9.	86.09
PF03119	28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	81.37
COG1998	51	RPS31 Ribosomal protein S27AE [Translation, riboso	81.0
PRK00432	50	30S ribosomal protein S27ae; Validated	80.75
PF08772	73	NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon lik	80.67

>COG3791 Uncharacterized conserved protein [Function unknown]

Probab=99.98  E-value=2.4e-32  Score=184.78  Aligned_cols=115  Identities=26%  Similarity=0.457  Sum_probs=95.0

Q ss_pred             EEEeeeCCCeEEEEEeCCCCeeeecCCchhccCCc-ee---EEEcCCCeEEccCCcccceeeeeCCceEeEEeCCCCCce
Q 037013            8 HKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGN-VH---FTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGIT   83 (128)
Q Consensus         8 ~~G~C~CGav~~~~~~~~~~~~~~ChC~~Crk~~g-~~---~~~~~~~~~i~~g~~~~l~~y~~s~~~~~r~FC~~CGs~   83 (128)
                      +.|+||||||+|++++++.. +.+|||++|||++| .+   ..++.+.|+++.|    +..|.+++..+.|.||++||++
T Consensus         4 ~~G~C~CGaVrf~v~~~~~~-~~~ChCs~Crk~~G~~~~~~~~~~~~~~~~~~g----~~~~~~~s~~~~r~FC~~CGs~   78 (133)
T COG3791           4 IEGGCLCGAVRFEVEGDPGH-VSACHCSDCRKASGAAFAAYAVVPRDALRGTRG----LPTYYFSSGSAGRGFCPTCGSP   78 (133)
T ss_pred             cccceeeceEEEEEecCCCC-ceeeCchHhhhhhCCceeeeeecccceeeecCC----CceEEeecCCCCCeecccCCCc
Confidence            44999999999999999986 67999999999965 33   4556777877755    3444447788999999999999


Q ss_pred             EEeccCCCCCeEEEEecccCCCC-C-CceEEEEecCCCcccccccc
Q 037013           84 SFYVPRGTPNGVAVTFRGVDPGT-L-SHVEIKHYDGHNWESSLDQF  127 (128)
Q Consensus        84 l~~~~~~~~~~~~v~~g~ld~~~-~-~~~~i~~~~~~~w~~~~~~~  127 (128)
                      ||+...+....+.|++++||+++ + |++|+|+.++++|++..+++
T Consensus        79 l~~~~~~~~~~~~v~~~~ld~p~~~~p~~~~~~~~~~~w~~~~~~~  124 (133)
T COG3791          79 LFWRGPDEDPFVGVNAGALDDPEFLPPQVQIFVGSKLPWLDIADDL  124 (133)
T ss_pred             eEEecCCCCceEEEEEeeecCcccCCCceeeeeeccCCcccccCCC
Confidence            99987654468999999999765 3 68999999999999988765

>TIGR02820 formald_GSH S-(hydroxymethyl)glutathione synthase

Probab=99.96  E-value=2.7e-29  Score=176.50  Aligned_cols=112  Identities=17%  Similarity=0.234  Sum_probs=95.1

Q ss_pred             eeEEEe---eeCC--CeEEEEEeCCCCeeeecCCchhccCCc----eeEEEcCCCeEEccCCcccceeeeeCCceEeEEe
Q 037013            6 VLHKGG---CRCR--KLRWRVRAPRSVEAWKCNCSDCSMRGN----VHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVF   76 (128)
Q Consensus         6 ~~~~G~---C~CG--av~~~~~~~~~~~~~~ChC~~Crk~~g----~~~~~~~~~~~i~~g~~~~l~~y~~s~~~~~r~F   76 (128)
                      ..++|+   |+||  +|+|+++++|.. +.+|||++|||++|    .++.+|.++|+|++|+ +.++.|. +++.+.|.|
T Consensus        15 ~~~~GgtasClCGsvaV~y~v~~~p~~-v~~CHCs~CRK~TGsafs~~~~v~~~~~~i~~G~-~~l~~Y~-ss~~~~R~F   91 (182)
T TIGR02820        15 TSFAGGTLKCLCTSNKVTVKIKGQSAH-NHACGCSKCWKPEGAIFSVVAVVPRDNVTVTANG-DKLKVVD-ASATIQRHA   91 (182)
T ss_pred             CCCCCCCcEEccCCCEEEEEEecCCCc-eeeeChHHhhccccCcceEEEEEEhhheEEecCC-cceEEEe-CCCCEEeec
Confidence            458899   9999  699999999875 78999999999976    3678999999998884 7788897 788899999


Q ss_pred             CCCCCceEEeccCC-CC---CeEEEEecccCCCCC--CceEEEEecCCCc
Q 037013           77 CKVCGITSFYVPRG-TP---NGVAVTFRGVDPGTL--SHVEIKHYDGHNW  120 (128)
Q Consensus        77 C~~CGs~l~~~~~~-~~---~~~~v~~g~ld~~~~--~~~~i~~~~~~~w  120 (128)
                      |++||++||+.... .+   +.+.|++|+||++.+  |.+|||+.++++-
T Consensus        92 C~~CGS~L~~~~~~~~~~~~g~v~I~aGtLDd~~~~~P~~hIft~s~~~~  141 (182)
T TIGR02820        92 CKGCGTHMYGRIENKDHPFYGLDFIHTELSAEDGWSAPGFAAFVSSIIET  141 (182)
T ss_pred             CCCCCCcccccccccCCCccceeEEEEeecCCCCcCCCeEEEEEeecccc
Confidence            99999999988642 22   455999999998665  6899999999753

The formation of S-(hydroxymethyl)glutathione synthase from glutathione and formaldehyde occurs naturally, but this enzyme speeds its formation in some species as part of a pathway of formaldehyde detoxification.

>PRK05417 glutathione-dependent formaldehyde-activating enzyme; Provisional

Probab=99.96  E-value=6.4e-29  Score=176.02  Aligned_cols=113  Identities=19%  Similarity=0.244  Sum_probs=97.9

Q ss_pred             CceeEEEe---eeCCC--eEEEEEeCCCCeeeecCCchhccCCc----eeEEEcCCCeEEccCCcccceeeeeCCceEeE
Q 037013            4 DSVLHKGG---CRCRK--LRWRVRAPRSVEAWKCNCSDCSMRGN----VHFTVAPENFELLGNSEEFLTTHTFGTGTAKH   74 (128)
Q Consensus         4 ~~~~~~G~---C~CGa--v~~~~~~~~~~~~~~ChC~~Crk~~g----~~~~~~~~~~~i~~g~~~~l~~y~~s~~~~~r   74 (128)
                      .+..++|+   |+||+  |+|+++++|.. +..|||++|||.+|    .++.+|.++|+|++|+ +.++.|. +++.++|
T Consensus        17 ~~~~f~Gg~l~ClCG~~aVry~v~g~p~~-~~~CHCs~CrK~sGs~fs~~a~vp~d~~~it~g~-~~l~~y~-ss~~i~R   93 (191)
T PRK05417         17 GAEGFAGGTLVCKCTSNPVEVRVKAQTAH-NHACGCTKCWKPEGALFSVVAVVPRDNVTVTANG-DKLKVVD-ESATIQR   93 (191)
T ss_pred             CcCccCCCCcEEeCCCcEEEEEEecCCCc-eeeeChhhhhccccCcceEEEEEEhhheEEEeCC-cceEEEe-CCCCeEe
Confidence            34568999   99996  99999999876 78999999999976    3678999999998774 6788887 7888999


Q ss_pred             EeCCCCCceEEeccC----CCCCeEEEEecccCCCCC--CceEEEEecCCC
Q 037013           75 VFCKVCGITSFYVPR----GTPNGVAVTFRGVDPGTL--SHVEIKHYDGHN  119 (128)
Q Consensus        75 ~FC~~CGs~l~~~~~----~~~~~~~v~~g~ld~~~~--~~~~i~~~~~~~  119 (128)
                      +||++||++||.+.+    ..++.+.|++|+||++.+  |..|+|+.++.+
T Consensus        94 ~FC~~CGS~L~~~~e~~~~~~pgl~fV~~gllDd~~~~~P~~~ifvsS~~e  144 (191)
T PRK05417         94 HACKECGVHMYGRIENKDHPFYGLDFVHTELSQEQGWSAPGFAAFVSSIIE  144 (191)
T ss_pred             eeCCCCCCccccccccccCCCCCeEEEehhhcCCCCCCCceEEeeeeeccc
Confidence            999999999999866    456899999999998763  689999999864

>KOG4192 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.91  E-value=4.2e-24  Score=138.71  Aligned_cols=124  Identities=42%  Similarity=0.867  Sum_probs=113.5

Q ss_pred             CCCCceeEEEeeeCCCeEEEEEeCCCCeeeecCCchhccCCceeEEEcCCCeEEccCCcccceeeeeCCceEeEEeCCCC
Q 037013            1 MDQDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVC   80 (128)
Q Consensus         1 m~~~~~~~~G~C~CGav~~~~~~~~~~~~~~ChC~~Crk~~g~~~~~~~~~~~i~~g~~~~l~~y~~s~~~~~r~FC~~C   80 (128)
                      |.+.+...+|+||||||+|++.+|....+..|+|++|++.....+.+|...|.+..| .+.+.+|.++...+++.||+.|
T Consensus         1 ~~~~lV~H~GgCHCGaVkw~v~ap~~l~~~~Cncrics~k~~~hfivpas~f~ll~g-~efitty~~gth~aqhtfck~c   79 (134)
T KOG4192|consen    1 EYMGLVQHTGGCHCGAVKWSVWAPADLDGCDCNCRICSKKQNRHFIVPASRFVLLVG-AEFITTYTFGTHQAQHTFCKRC   79 (134)
T ss_pred             CcccceeecCCcccceEEEEEecccceEEeeccchhhhhccceEEEEeccceEEEeC-cceEEEEEeccchhheeeeccc
Confidence            556778899999999999999999887788899999999998999999999999989 5889999999999999999999


Q ss_pred             CceEEeccCCCCCeEEEEecccCCCCCCceEEEEecCCCcccccc
Q 037013           81 GITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWESSLD  125 (128)
Q Consensus        81 Gs~l~~~~~~~~~~~~v~~g~ld~~~~~~~~i~~~~~~~w~~~~~  125 (128)
                      |..-|+.++.+|..+.|..-+||+..+..+.+-..++.+|....+
T Consensus        80 GV~sf~~~rs~p~~~~i~phCld~gTlr~v~~~~fnGqdwe~~~e  124 (134)
T KOG4192|consen   80 GVQSFYSPRSNPYGKGIAPHCLDEGTLRSVVWEEFNGQDWEATME  124 (134)
T ss_pred             cceeccccccCCCceeecceeecCCceeEEEEEEecCcchhHhhh
Confidence            999999998889999999999999999989899999999976543

>PF04828 GFA: Glutathione-dependent formaldehyde-activating enzyme; InterPro: IPR006913 The GFA family consists mainly of glutathione-dependent formaldehyde-activating enzymes, but also includes centromere protein V and a fission yeast protein described as uncharacterised lyase

Probab=99.91  E-value=1.1e-24  Score=137.64  Aligned_cols=86  Identities=24%  Similarity=0.444  Sum_probs=67.7

Q ss_pred             eecCCchhccCCc----eeEEEcCCCeEEccCCcccceeeeeCCceEeEEeCCCCCceEEeccCCCCCeEEEEecccCCC
Q 037013           30 WKCNCSDCSMRGN----VHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPG  105 (128)
Q Consensus        30 ~~ChC~~Crk~~g----~~~~~~~~~~~i~~g~~~~l~~y~~s~~~~~r~FC~~CGs~l~~~~~~~~~~~~v~~g~ld~~  105 (128)
                      +.|||++|||.+|    .++.+|+++|+|++|+ +.++.|+.+++.++|+||++||++|++.....++.+.|++|+||+.
T Consensus         1 ~~ChC~~Cr~~~g~~~~~~~~~~~~~~~~~~g~-~~l~~y~~s~~~~~r~FC~~CGs~l~~~~~~~~~~~~V~~g~ld~~   79 (92)
T PF04828_consen    1 YVCHCSDCRKWSGSPFSAWAIVPKDDFRWTSGS-ENLKEYQFSGKGVERYFCPTCGSPLFSEDERDPDLVGVNAGTLDDP   79 (92)
T ss_dssp             EEE-STTCHHHTT-SSEEEEEEEGGGEEEEE-G-GGEEEC--TTSSCEEEEETTT--EEEEEESSTTTEEEEEGGGBTT-
T ss_pred             CEeeChHHhcccCCceeeEEEEcccceEEeecc-ccceEEEeCCCcCcCcccCCCCCeeecccCCCCCEEEEEeEeeCCC
Confidence            4799999999998    5788999999999884 6899998788999999999999999987666789999999999986


Q ss_pred             C-C-CceEEEEec
Q 037013          106 T-L-SHVEIKHYD  116 (128)
Q Consensus       106 ~-~-~~~~i~~~~  116 (128)
                      + + |.+|||+++
T Consensus        80 ~~~~p~~hi~~~~   92 (92)
T PF04828_consen   80 DEFKPKAHIFTSE   92 (92)
T ss_dssp             -S--EEEEESG--
T ss_pred             CCCCCEEEEEEeC
Confidence            5 4 689999864

Glutathione-dependent formaldehyde-activating enzyme catalyse the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione. All known members of this family contain 5 strongly conserved cysteine residues.; GO: 0016846 carbon-sulfur lyase activity, 0008152 metabolic process; PDB: 3FAC_B 1XA8_A 1X6M_B.

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=92.29  E-value=0.036  Score=26.02  Aligned_cols=11  Identities=36%  Similarity=0.869  Sum_probs=8.9

Q ss_pred             EEeCCCCCceE
Q 037013           74 HVFCKVCGITS   84 (128)
Q Consensus        74 r~FC~~CGs~l   84 (128)
                      -.||++||++|
T Consensus        13 ~~fC~~CG~~l   23 (23)
T PF13240_consen   13 AKFCPNCGTPL   23 (23)
T ss_pred             CcchhhhCCcC
Confidence            46899999875

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=91.71  E-value=0.048  Score=26.26  Aligned_cols=13  Identities=31%  Similarity=0.751  Sum_probs=10.0

Q ss_pred             EeEEeCCCCCceE
Q 037013           72 AKHVFCKVCGITS   84 (128)
Q Consensus        72 ~~r~FC~~CGs~l   84 (128)
                      ....||++||++|
T Consensus        14 ~~~~fC~~CG~~L   26 (26)
T PF13248_consen   14 PDAKFCPNCGAKL   26 (26)
T ss_pred             cccccChhhCCCC
Confidence            3457999999875

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=90.64  E-value=0.1  Score=26.90  Aligned_cols=14  Identities=29%  Similarity=0.382  Sum_probs=6.8

Q ss_pred             EeCCCCCceEEecc
Q 037013           75 VFCKVCGITSFYVP   88 (128)
Q Consensus        75 ~FC~~CGs~l~~~~   88 (128)
                      .||+.||.+|-...
T Consensus         1 kfC~~CG~~l~~~i   14 (34)
T PF14803_consen    1 KFCPQCGGPLERRI   14 (34)
T ss_dssp             -B-TTT--B-EEE-
T ss_pred             CccccccChhhhhc
Confidence            39999999987654

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=88.70  E-value=0.33  Score=24.36  Aligned_cols=16  Identities=38%  Similarity=0.804  Sum_probs=9.3

Q ss_pred             EEeCCCCCceEEeccC
Q 037013           74 HVFCKVCGITSFYVPR   89 (128)
Q Consensus        74 r~FC~~CGs~l~~~~~   89 (128)
                      ..||+.||+++.....
T Consensus         3 ~rfC~~CG~~t~~~~~   18 (32)
T PF09297_consen    3 HRFCGRCGAPTKPAPG   18 (32)
T ss_dssp             TSB-TTT--BEEE-SS
T ss_pred             CcccCcCCccccCCCC
Confidence            4699999999987554

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2

Probab=87.83  E-value=0.28  Score=25.34  Aligned_cols=15  Identities=27%  Similarity=0.565  Sum_probs=11.8

Q ss_pred             EeCCCCCceEEeccC
Q 037013           75 VFCKVCGITSFYVPR   89 (128)
Q Consensus        75 ~FC~~CGs~l~~~~~   89 (128)
                      .||++||.-|+-...
T Consensus         2 ~FCp~C~nlL~p~~~   16 (35)
T PF02150_consen    2 RFCPECGNLLYPKED   16 (35)
T ss_dssp             -BETTTTSBEEEEEE
T ss_pred             eeCCCCCccceEcCC
Confidence            599999999987644

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=86.09  E-value=0.65  Score=25.60  Aligned_cols=11  Identities=27%  Similarity=0.933  Sum_probs=6.6

Q ss_pred             EEeCCCCCceE
Q 037013           74 HVFCKVCGITS   84 (128)
Q Consensus        74 r~FC~~CGs~l   84 (128)
                      ++.|+.||-+.
T Consensus        20 ~~vC~~Cg~~~   30 (52)
T smart00661       20 RFVCRKCGYEE   30 (52)
T ss_pred             EEECCcCCCeE
Confidence            56677776543

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.37  E-value=1.2  Score=21.74  Aligned_cols=14  Identities=29%  Similarity=0.508  Sum_probs=7.7

Q ss_pred             eCCCCCceEEeccC
Q 037013           76 FCKVCGITSFYVPR   89 (128)
Q Consensus        76 FC~~CGs~l~~~~~   89 (128)
                      +|+.||+.|....+
T Consensus         1 ~CP~C~s~l~~~~~   14 (28)
T PF03119_consen    1 TCPVCGSKLVREEG   14 (28)
T ss_dssp             B-TTT--BEEE-CC
T ss_pred             CcCCCCCEeEcCCC
Confidence            59999999985443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.

>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]

Probab=81.00  E-value=1.7  Score=24.32  Aligned_cols=16  Identities=38%  Similarity=0.789  Sum_probs=11.3

Q ss_pred             eEEeCCCCCceEEecc
Q 037013           73 KHVFCKVCGITSFYVP   88 (128)
Q Consensus        73 ~r~FC~~CGs~l~~~~   88 (128)
                      .+.||++||-.+|...
T Consensus        18 k~~~CPrCG~gvfmA~   33 (51)
T COG1998          18 KNRFCPRCGPGVFMAD   33 (51)
T ss_pred             ccccCCCCCCcchhhh
Confidence            4468999997666544

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=80.75  E-value=1.5  Score=24.46  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=13.3

Q ss_pred             ceeeeeCCceE--eEEeCCCCCce
Q 037013           62 LTTHTFGTGTA--KHVFCKVCGIT   83 (128)
Q Consensus        62 l~~y~~s~~~~--~r~FC~~CGs~   83 (128)
                      +..|.-.+..+  .+.||++||+.
T Consensus         6 ~~~y~v~~~~v~~~~~fCP~Cg~~   29 (50)
T PRK00432          6 REYYEVDGGKVKRKNKFCPRCGSG   29 (50)
T ss_pred             eeeEEECCCEEEEccCcCcCCCcc
Confidence            44454333333  34699999996

>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1

Probab=80.67  E-value=0.48  Score=28.70  Aligned_cols=16  Identities=25%  Similarity=0.688  Sum_probs=6.5

Q ss_pred             ceEeEEeCCCCCceEE
Q 037013           70 GTAKHVFCKVCGITSF   85 (128)
Q Consensus        70 ~~~~r~FC~~CGs~l~   85 (128)
                      +...+.||+.||-...
T Consensus        20 ~~~~k~FCp~CGn~TL   35 (73)
T PF08772_consen   20 KDMTKQFCPKCGNATL   35 (73)
T ss_dssp             S-SS--S-SSS--S--
T ss_pred             CCCCceeCcccCCCcc
Confidence            4577899999998643

; PDB: 2CON_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
3fac_A	118	Crystal Structure Of Rhodobacter Sphaeroides Protei		8e-09

>pdb|3FAC|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Protein Rsp_2168. Northeast Structural Genomics Target Rhr83. Length = 118

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 9   KGGCRCRKLRWRVRAPRS-VEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 67
           KG C C  +   V       +A +C+CS C  RG +  T    +  ++  +E  LT + F
Sbjct: 2   KGTCHCGAVEIEVELLNGFADARRCDCSFCRRRGAIAATARLSDLRVVRGAEN-LTLYQF 60
Query: 68  GTGTAKHVFCKVCGITSFYVPRGTPN--GVAVT-FRGVDPGTLSHV 110
           GT TAKH FC+ CGI + +  R  P   GV V    GV+P  L  V
Sbjct: 61  GTRTAKHWFCRTCGIYTHHQRRSNPEEYGVNVAILEGVNPRDLGEV 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
3fac_A	118	Putative uncharacterized protein; complete proteom	2e-22
1x6m_A	196	GFA, glutathione-dependent formaldehyde-activating	3e-07

>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2} Length = 118

 Score = 84.7 bits (209), Expect = 2e-22
 Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 9   KGGCRCRKLRWRVRAP-RSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 67
           KG C C  +   V       +A +C+CS C  RG +  T    +  ++    E LT + F
Sbjct: 2   KGTCHCGAVEIEVELLNGFADARRCDCSFCRRRGAIAATARLSDLRVVRG-AENLTLYQF 60

Query: 68  GTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFR---GVDPGTLSHVEIKHYDGHN 119
           GT TAKH FC+ CGI + +  R  P    V      GV+P  L    +   DG N
Sbjct: 61  GTRTAKHWFCRTCGIYTHHQRRSNPEEYGVNVAILEGVNPRDLGE--VPWTDGVN 113

>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A* Length = 196

 Score = 45.9 bits (108), Expect = 3e-07
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 8/119 (6%)

Query: 9   KGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMR-GNVHFTVA---PENFELLGNSEEFLTT 64
              C    +R  VRA  +     C C+ C    G +   VA    +  E+L  +E+    
Sbjct: 32  HCKCSTNPVRVAVRAQ-TAHNHVCGCTKCWKPEGAIFSQVAVVGRDALEVLEGAEKLEIV 90

Query: 65  HTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWESS 123
           +       +   C+ CG+  +       +        V             +   + SS
Sbjct: 91  N--AEAPIQRHRCRDCGVHMYGRIENRDHPF-YGLDFVHTELSDEDGWSAPEFAAFVSS 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
3fac_A	118	Putative uncharacterized protein; complete proteom	99.97
1x6m_A	196	GFA, glutathione-dependent formaldehyde-activating	99.96
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	92.37
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	85.07
2con_A	79	RUH-035 protein, NIN one binding protein; ribosome	81.23

>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}

Probab=99.97  E-value=1.6e-32  Score=181.24  Aligned_cols=108  Identities=33%  Similarity=0.553  Sum_probs=89.1

Q ss_pred             EEeeeCCCeEEEEEeC--CCCeeeecCCchhccCCceeEEEcCCCeEEccCCcccceeeeeCCceEeEEeCCCCCceEEe
Q 037013            9 KGGCRCRKLRWRVRAP--RSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFY   86 (128)
Q Consensus         9 ~G~C~CGav~~~~~~~--~~~~~~~ChC~~Crk~~g~~~~~~~~~~~i~~g~~~~l~~y~~s~~~~~r~FC~~CGs~l~~   86 (128)
                      +|+||||+|+|+++++  |.. +..|||++|||.+++++.+|.++|+|++|+ +.++.|+++++.++|+||++||++||+
T Consensus         2 ~GsC~CGaV~~~v~~~~~p~~-~~~ChC~~Crk~g~~~~~~~~~~~~~~~g~-~~l~~y~~s~~~~~r~FC~~CGs~l~~   79 (118)
T 3fac_A            2 KGTCHCGAVEIEVELLNGFAD-ARRCDCSFCRRRGAIAATARLSDLRVVRGA-ENLTLYQFGTRTAKHWFCRTCGIYTHH   79 (118)
T ss_dssp             EEECSSSCCEEEECCTTTTTT-CBCCCSTTHHHHCCCEEEEEGGGEEEEECG-GGEEEECCTTSCSEEEEETTTCCEEEE
T ss_pred             CeEeeCCCEEEEEEcCCCcCC-eeeeCchHhhccCCEEEEEcccceEEcCCh-hHceEEecCCCCEeeEECCCCCccccC
Confidence            7999999999999987  554 689999999999778889999999998884 779999977788899999999999999


Q ss_pred             ccCCCCCeEEEEecccCCCC---CCceEEEEecCCCc
Q 037013           87 VPRGTPNGVAVTFRGVDPGT---LSHVEIKHYDGHNW  120 (128)
Q Consensus        87 ~~~~~~~~~~v~~g~ld~~~---~~~~~i~~~~~~~w  120 (128)
                      .....++.+.|++|+||+++   ++.+.|  .|+++|
T Consensus        80 ~~~~~~~~~~V~~g~ld~~~~~~l~~~~~--~dG~~~  114 (118)
T 3fac_A           80 QRRSNPEEYGVNVAILEGVNPRDLGEVPW--TDGVNH  114 (118)
T ss_dssp             ECSSCTTEEEEEGGGBTTCCGGGGCSCCC--C-----
T ss_pred             ccCCCCCEEEEEecccCCCChHHcccccc--cCCCCC
Confidence            87666888999999999865   344555  466654

>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*

Probab=99.96  E-value=2.1e-30  Score=184.55  Aligned_cols=116  Identities=18%  Similarity=0.236  Sum_probs=98.3

Q ss_pred             CCCceeEEEe---eeCC--CeEEEEEeCCCCeeeecCCchhccCCc----eeEEEcCCCeEEccCCcccceeeeeCCceE
Q 037013            2 DQDSVLHKGG---CRCR--KLRWRVRAPRSVEAWKCNCSDCSMRGN----VHFTVAPENFELLGNSEEFLTTHTFGTGTA   72 (128)
Q Consensus         2 ~~~~~~~~G~---C~CG--av~~~~~~~~~~~~~~ChC~~Crk~~g----~~~~~~~~~~~i~~g~~~~l~~y~~s~~~~   72 (128)
                      ++.+.+++|+   |+||  +|+|+++++|.. +..|||++|||.+|    .++.+|+++|+|++|+ +.++.|. +++.+
T Consensus        20 ~~~~~~~~G~~lsC~CG~v~V~~~~~~~p~~-~~~ChCs~Crk~~Gs~f~~~~~vp~~~~~~~~G~-~~l~~y~-ss~~~   96 (196)
T 1x6m_A           20 KPAQPGFAGGTLHCKCSTNPVRVAVRAQTAH-NHVCGCTKCWKPEGAIFSQVAVVGRDALEVLEGA-EKLEIVN-AEAPI   96 (196)
T ss_dssp             CCCCTTCCCEEEECSCSSSCCEEEECSCCEE-EEEECCSSSCCCTTCSSEEEEEEEGGGEEEEECG-GGEEESC-TTSSE
T ss_pred             CCCCccccCCCCEecCCCCeEEEEEecCCCC-eEecCcHHHhcccCCccEEEEEEehhHeEEecCC-CceEEEe-CCCCe
Confidence            4445678999   9999  999999988875 78999999999986    4678999999998884 7789995 78889


Q ss_pred             eEEeCCCCCceEEeccCCC----CCeEEEEecccCCCCC--CceEEEEecCCCc
Q 037013           73 KHVFCKVCGITSFYVPRGT----PNGVAVTFRGVDPGTL--SHVEIKHYDGHNW  120 (128)
Q Consensus        73 ~r~FC~~CGs~l~~~~~~~----~~~~~v~~g~ld~~~~--~~~~i~~~~~~~w  120 (128)
                      +|+||++||++||+.....    ++.+.|++|+||++.+  |..|||+.++.+|
T Consensus        97 ~r~FC~~CGs~l~~~~~~~~~~~~~~~~V~~g~lD~~~~~~P~~hif~~s~~~~  150 (196)
T 1x6m_A           97 QRHRCRDCGVHMYGRIENRDHPFYGLDFVHTELSDEDGWSAPEFAAFVSSIIES  150 (196)
T ss_dssp             EEEEETTTCCEEEEEECCTTSTTTTEEEECGGGBSCCCCCCCCEEESGGGGGGG
T ss_pred             eeEECCCCCCcCCcccccCCCCccceEEEEEeccCCcccCCCeEEEEecccccc
Confidence            9999999999999986543    3479999999998653  6899999997655

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=92.37  E-value=0.083  Score=28.82  Aligned_cols=17  Identities=35%  Similarity=0.761  Sum_probs=13.2

Q ss_pred             eEEeCCCCCceEEeccC
Q 037013           73 KHVFCKVCGITSFYVPR   89 (128)
Q Consensus        73 ~r~FC~~CGs~l~~~~~   89 (128)
                      .+.||+.||+.++....
T Consensus        18 ~~k~CP~CG~~~fm~~~   34 (50)
T 3j20_Y           18 KNKFCPRCGPGVFMADH   34 (50)
T ss_dssp             SSEECSSSCSSCEEEEC
T ss_pred             ecccCCCCCCceEEecC
Confidence            46899999998877643

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=85.07  E-value=0.15  Score=28.39  Aligned_cols=14  Identities=43%  Similarity=0.961  Sum_probs=10.1

Q ss_pred             EEeCCCCCceEEec
Q 037013           74 HVFCKVCGITSFYV   87 (128)
Q Consensus        74 r~FC~~CGs~l~~~   87 (128)
                      +.|||.||+.++..
T Consensus        18 ~~fCPkCG~~~~ma   31 (55)
T 2k4x_A           18 HRFCPRCGPGVFLA   31 (55)
T ss_dssp             SCCCTTTTTTCCCE
T ss_pred             cccCcCCCCceeEe
Confidence            57888888876543

>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1

Probab=81.23  E-value=0.28  Score=29.32  Aligned_cols=15  Identities=33%  Similarity=0.817  Sum_probs=12.1

Q ss_pred             ceEeEEeCCCCCceE
Q 037013           70 GTAKHVFCKVCGITS   84 (128)
Q Consensus        70 ~~~~r~FC~~CGs~l   84 (128)
                      ....+.||+.||-..
T Consensus        26 ~~~~k~FCp~CGn~T   40 (79)
T 2con_A           26 SDMNRVFCGHCGNKT   40 (79)
T ss_dssp             SCSSCCSCSSSCCSC
T ss_pred             CCcccccccccCccc
Confidence            557789999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1x6ma_	196	Glutathione-dependent formaldehyde-activating enzy	99.95
d2cona1	66	RNA-binding protein NOB1 (Nin one binding) {Mouse	83.98

>d1x6ma_ b.88.1.4 (A:) Glutathione-dependent formaldehyde-activating enzyme, Gfa {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: Glutathione-dependent formaldehyde-activating enzyme, Gfa
domain: Glutathione-dependent formaldehyde-activating enzyme, Gfa
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=1.6e-29  Score=177.48  Aligned_cols=116  Identities=18%  Similarity=0.228  Sum_probs=97.1

Q ss_pred             eEEEe---eeCCC--eEEEEEeCCCCeeeecCCchhccCCc----eeEEEcCCCeEEccCCcccceeeeeCCceEeEEeC
Q 037013            7 LHKGG---CRCRK--LRWRVRAPRSVEAWKCNCSDCSMRGN----VHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFC   77 (128)
Q Consensus         7 ~~~G~---C~CGa--v~~~~~~~~~~~~~~ChC~~Crk~~g----~~~~~~~~~~~i~~g~~~~l~~y~~s~~~~~r~FC   77 (128)
                      .++|+   |+||+  |+|++++++.. ...|||++|||.+|    .++.+|+++|+|++|+ +.+++|. ++..++|+||
T Consensus        25 ~f~GGtl~C~Cg~~~V~v~v~g~p~~-~~~CHCs~CrK~tGs~f~~~~~v~~d~~~vt~g~-~~l~~~~-ss~~i~R~FC  101 (196)
T d1x6ma_          25 GFAGGTLHCKCSTNPVRVAVRAQTAH-NHVCGCTKCWKPEGAIFSQVAVVGRDALEVLEGA-EKLEIVN-AEAPIQRHRC  101 (196)
T ss_dssp             TCCCEEEECSCSSSCCEEEECSCCEE-EEEECCSSSCCCTTCSSEEEEEEEGGGEEEEECG-GGEEESC-TTSSEEEEEE
T ss_pred             ccCCCceeEeeCCEEEEEEECCCcce-eEeecCccccCCcCCceeEEEEEeccceEEccCC-ccceEEe-ccCceeeecc
Confidence            35565   88886  88888888875 68899999999986    3678999999999884 7789998 7788999999


Q ss_pred             CCCCceEEeccCC----CCCeEEEEecccCCCCC--CceEEEEecCCCcccccc
Q 037013           78 KVCGITSFYVPRG----TPNGVAVTFRGVDPGTL--SHVEIKHYDGHNWESSLD  125 (128)
Q Consensus        78 ~~CGs~l~~~~~~----~~~~~~v~~g~ld~~~~--~~~~i~~~~~~~w~~~~~  125 (128)
                      ++||++||.+.+.    .++.+.|++|+||+..+  |..|||+.++.+|...-+
T Consensus       102 ~~CGs~lf~r~e~~~~~f~Gl~~I~~G~lDd~~~~~P~~hiFvsSki~~~~~p~  155 (196)
T d1x6ma_         102 RDCGVHMYGRIENRDHPFYGLDFVHTELSDEDGWSAPEFAAFVSSIIESGVDPS  155 (196)
T ss_dssp             TTTCCEEEEEECCTTSTTTTEEEECGGGBSCCCCCCCCEEESGGGGGGGTCCGG
T ss_pred             CCCCCcEEEeecCCCCcccceeEEEeeeeCCCCCCCCcEEEEEecccccccChh
Confidence            9999999997653    34689999999998763  789999999999865543

>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: NOB1 zinc finger-like
family: NOB1 zinc finger-like
domain: RNA-binding protein NOB1 (Nin one binding)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.98  E-value=0.089  Score=29.03  Aligned_cols=14  Identities=36%  Similarity=0.840  Sum_probs=11.0

Q ss_pred             ceEeEEeCCCCCce
Q 037013           70 GTAKHVFCKVCGIT   83 (128)
Q Consensus        70 ~~~~r~FC~~CGs~   83 (128)
                      ....+.||+.||-.
T Consensus        19 ~~~~k~FCpkCGn~   32 (66)
T d2cona1          19 SDMNRVFCGHCGNK   32 (66)
T ss_dssp             SCSSCCSCSSSCCS
T ss_pred             CCcccccCcccCCC
Confidence            34678999999974