Citrus Sinensis ID: 037016

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTVP
Secondary Structure (PSIPRED)
cccccEEEEEEccccccEEEEEcccccHHHHHEEEEEEEccEEEEEEEEcccEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccHHHHHHHcc
Coil and Loop (DISEMBL)
MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTVP
Flexible Loop (DISEMBL)
mgrgkiviqkinnstsrqvtfskrRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTVP
Low Complexity Region (SEG)
MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTVP
Disordered region (IsUnstruct)
*************************KGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLT***
Disordered Region (DISOPRED)
***GKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV*
Disordered Region (DISEMBL)
MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTVP
Disordered Region (DISPRO)
*****IVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSL*TVP
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
Q6Z6W2	241	MADS-box transcription fa	yes	no	0.885	0.257	0.790	3e-23
Q38840	227	Agamous-like MADS-box pro	yes	no	0.857	0.264	0.833	2e-22
Q9SI38	234	MADS-box transcription fa	no	no	0.828	0.247	0.827	4e-22
Q9SZJ6	228	Agamous-like MADS-box pro	no	no	0.885	0.271	0.822	5e-22
Q6VAM4	159	MADS-box transcription fa	no	no	0.885	0.389	0.725	3e-21
Q6EP49	240	MADS-box transcription fa	no	no	0.885	0.258	0.758	1e-20
A2RVQ5	240	Agamous-like MADS-box pro	no	no	0.885	0.258	0.741	2e-20
Q9M2K8	256	Agamous-like MADS-box pro	no	no	0.828	0.226	0.775	3e-19
Q40702	209	MADS-box transcription fa	no	no	0.814	0.272	0.701	9e-19
Q9XGJ4	237	MADS-box protein GGM13 OS	N/A	no	0.828	0.244	0.706	1e-18

>sp|Q6Z6W2|MAD57_ORYSJ MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 58/62 (93%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKIVI++I+NSTSRQVTFSKRR GL+KKAKELSILCDAEVGL +FSST +LYEF++T
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSST 60

Query: 61 RL 62
           +
Sbjct: 61 NM 62

Probable transcription factor.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38840|AGL17_ARATH Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/60 (83%), Positives = 57/60 (95%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKIVIQKI++STSRQVTFSKRRKGLIKKAKEL+ILCDAEV L IFS+T KLY+FA++
Sbjct: 1  MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI38|ANR1_ARATH MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 55/58 (94%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFA 58
          MGRGKIVI++I+NSTSRQVTFSKRR GL+KKAKELSILCDAEVG+ IFSST KLY++A
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYA 58

Probable transcription factor. Required for root plasticity in response to nitrate, NO(3)(-). Promotes lateral root growth in a NRT1.1-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZJ6|AGL21_ARATH Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 59/62 (95%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKIVIQ+I++STSRQVTFSKRRKGLIKKAKEL+ILCDAEVGL IFSST KLY+FA++
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 61 RL 62
           +
Sbjct: 61 SM 62

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 57/62 (91%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKI I++I+N+TSRQVTFSKRR GL KKA+ELSILCDAEVGL +FSST++LY+FA++
Sbjct: 1  MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS 60

Query: 61 RL 62
           +
Sbjct: 61 SM 62

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/62 (75%), Positives = 57/62 (91%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKIVI++I+NSTSRQVTFSKRR G+ KKAKEL+ILCDAEVGL IFSST +LYE+++T
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST 60

Query: 61 RL 62
           +
Sbjct: 61 SM 62

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/62 (74%), Positives = 57/62 (91%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKI I++INNSTSRQVTFSKRR GL+KKAKEL+ILCDAEVG+ IFSST +LY+F+++
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 61 RL 62
           +
Sbjct: 61 SM 62

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2K8|AGL18_ARATH Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/58 (77%), Positives = 50/58 (86%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFA 58
          MGRG+I I+KI N  SRQVTFSKRR GLIKKAKELSILCDAEV L IFSST K+Y+F+
Sbjct: 1  MGRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFS 58

Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40702|MADS2_ORYSJ MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 51/57 (89%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEF 57
          MGRGKI I++I NST+RQVTFSKRR G++KKA+E+S+LCDAEVG+ IFSS  KLY++
Sbjct: 1  MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDY 57

Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XGJ4|GGM13_GNEGN MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 52/58 (89%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFA 58
          MGRGKI I++I N+T+RQVTFSKRR GL+KKA ELS+LCDAE+GL IFSS+ KL+E++
Sbjct: 1  MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYS 58

Probable transcription factor.

Gnetum gnemon (taxid: 3382)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
421958008	105	MADS-box protein AGL17 [Aquilegia coerul	0.885	0.590	0.822	3e-22
356496735	222	PREDICTED: agamous-like MADS-box protein	0.885	0.279	0.822	3e-22
316890768	221	MADS-box protein AGL17 subfamily [Coffea	0.885	0.280	0.790	4e-22
357485341	239	MADS-box protein [Medicago truncatula] g	0.885	0.259	0.822	4e-22
357485343	225	MADS-box protein [Medicago truncatula] g	0.885	0.275	0.822	5e-22
359495802	224	PREDICTED: MADS-box transcription factor	0.885	0.276	0.822	8e-22
115448477	241	Os02g0731200 [Oryza sativa Japonica Grou	0.885	0.257	0.790	1e-21
46390472	237	transcription factor MADS57 [Oryza sativ	0.885	0.261	0.790	1e-21
413938707	67	putative MADS-box transcription factor f	0.871	0.910	0.819	1e-21
222628999	75	hypothetical protein OsJ_15063 [Oryza sa	0.928	0.866	0.769	1e-21

>gi|421958008|gb|AFX72881.1| MADS-box protein AGL17 [Aquilegia coerulea]

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 59/62 (95%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKIVIQ+I+N+TSRQVTFSKRR GL+KKAKEL+ILCDAEVGL IFSST KLY+FA+T
Sbjct: 1  MGRGKIVIQRIDNTTSRQVTFSKRRNGLLKKAKELAILCDAEVGLVIFSSTGKLYDFAST 60

Query: 61 RL 62
          R+
Sbjct: 61 RI 62

Source: Aquilegia coerulea

Species: Aquilegia coerulea

Genus: Aquilegia

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496735|ref|XP_003517221.1| PREDICTED: agamous-like MADS-box protein AGL21-like [Glycine max]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 59/62 (95%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKIVI++I+NSTSRQVTFSKRRKGLIKKAKEL+ILCDA+VGL IFSST KLYE+A+T
Sbjct: 1  MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYAST 60

Query: 61 RL 62
           +
Sbjct: 61 SM 62

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316890768|gb|ADU56830.1| MADS-box protein AGL17 subfamily [Coffea arabica]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 59/62 (95%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKIVI++I+NSTSRQVTFSKRR GL+KKAKEL++LCDAEVG+ IFSST+KLYE+ANT
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAVLCDAEVGVVIFSSTSKLYEYANT 60

Query: 61 RL 62
           +
Sbjct: 61 SM 62

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485341|ref|XP_003612958.1| MADS-box protein [Medicago truncatula] gi|163889373|gb|ABY48143.1| MADS-box protein [Medicago truncatula] gi|355514293|gb|AES95916.1| MADS-box protein [Medicago truncatula]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 58/62 (93%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKIVI++I+N TSRQVTFSKRRKGLIKKAKEL+ILCDA+VGL IFSST KLYE+ANT
Sbjct: 1  MGRGKIVIRRIDNCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYANT 60

Query: 61 RL 62
           +
Sbjct: 61 SM 62

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485343|ref|XP_003612959.1| MADS-box protein [Medicago truncatula] gi|355514294|gb|AES95917.1| MADS-box protein [Medicago truncatula]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 58/62 (93%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKIVI++I+N TSRQVTFSKRRKGLIKKAKEL+ILCDA+VGL IFSST KLYE+ANT
Sbjct: 1  MGRGKIVIRRIDNCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYANT 60

Query: 61 RL 62
           +
Sbjct: 61 SM 62

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495802|ref|XP_002273556.2| PREDICTED: MADS-box transcription factor 27-like [Vitis vinifera] gi|297736691|emb|CBI25708.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (268), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 58/62 (93%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKI I++I+NSTSRQVTFSKRRKGL+KKAKEL+ILCDAEVGL IFSST KLYEFA+T
Sbjct: 1  MGRGKIEIRRIDNSTSRQVTFSKRRKGLLKKAKELAILCDAEVGLIIFSSTGKLYEFAST 60

Query: 61 RL 62
           +
Sbjct: 61 SM 62

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115448477|ref|NP_001048018.1| Os02g0731200 [Oryza sativa Japonica Group] gi|91207155|sp|Q6Z6W2.2|MAD57_ORYSJ RecName: Full=MADS-box transcription factor 57; AltName: Full=OsMADS57 gi|30313689|gb|AAO47712.1| transcription factor MADS57 [Oryza sativa Japonica Group] gi|113537549|dbj|BAF09932.1| Os02g0731200 [Oryza sativa Japonica Group] gi|215768849|dbj|BAH01078.1| unnamed protein product [Oryza sativa Japonica Group] gi|222623614|gb|EEE57746.1| hypothetical protein OsJ_08264 [Oryza sativa Japonica Group]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 58/62 (93%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKIVI++I+NSTSRQVTFSKRR GL+KKAKELSILCDAEVGL +FSST +LYEF++T
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSST 60

Query: 61 RL 62
           +
Sbjct: 61 NM 62

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46390472|dbj|BAD15933.1| transcription factor MADS57 [Oryza sativa Japonica Group]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 58/62 (93%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKIVI++I+NSTSRQVTFSKRR GL+KKAKELSILCDAEVGL +FSST +LYEF++T
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSST 60

Query: 61 RL 62
           +
Sbjct: 61 NM 62

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413938707|gb|AFW73258.1| putative MADS-box transcription factor family protein [Zea mays]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 58/61 (95%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKIVI++I+NSTSRQVTFSKRR GL+KKAKELSILCDAEVGL IFSST +LY+F+NT
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGLIIFSSTGRLYDFSNT 60

Query: 61 R 61
          +
Sbjct: 61 K 61

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222628999|gb|EEE61131.1| hypothetical protein OsJ_15063 [Oryza sativa Japonica Group]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 59/65 (90%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGRGKIVI++I+NSTSRQVTFSKRR G+ KKAKEL+ILCDAEVGL IFSST +LYE+A+T
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLVIFSSTGRLYEYAST 60

Query: 61 RLLCS 65
          R + S
Sbjct: 61 RSMAS 65

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
TAIR|locus:2121070	228	AGL21 "AT4G37940" [Arabidopsis	0.885	0.271	0.822	5.5e-22
TAIR|locus:2042182	234	AGL44 "AGAMOUS-like 44" [Arabi	0.842	0.252	0.813	8e-21
TAIR|locus:2066050	227	AGL17 "AGAMOUS-like 17" [Arabi	0.857	0.264	0.833	1e-20
TAIR|locus:2082618	240	AGL16 "AGAMOUS-like 16" [Arabi	0.885	0.258	0.741	1.7e-20
TAIR|locus:2082613	256	AGL18 "AGAMOUS-like 18" [Arabi	0.842	0.230	0.762	1.4e-18
TAIR|locus:2140578	256	STK "AT4G09960" [Arabidopsis t	0.885	0.242	0.661	9.5e-18
TAIR|locus:2166766	252	TT16 "TRANSPARENT TESTA16" [Ar	0.842	0.234	0.711	1.6e-17
TAIR|locus:2177125	268	AGL15 "AGAMOUS-like 15" [Arabi	0.957	0.25	0.597	2e-17
UNIPROTKB|Q40885	242	AG1 "Floral homeotic protein A	0.942	0.272	0.606	2.5e-17
UNIPROTKB|Q2QW53	270	MADS13 "MADS-box transcription	0.842	0.218	0.677	3.2e-17

TAIR|locus:2121070 AGL21 "AT4G37940" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 51/62 (82%), Positives = 59/62 (95%)

Query:     1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
             MGRGKIVIQ+I++STSRQVTFSKRRKGLIKKAKEL+ILCDAEVGL IFSST KLY+FA++
Sbjct:     1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query:    61 RL 62
              +
Sbjct:    61 SM 62

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2042182 AGL44 "AGAMOUS-like 44" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/59 (81%), Positives = 56/59 (94%)

Query:     1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFAN 59
             MGRGKIVI++I+NSTSRQVTFSKRR GL+KKAKELSILCDAEVG+ IFSST KLY++A+
Sbjct:     1 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYAS 59

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0007584 "response to nutrient" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0008134 "transcription factor binding" evidence=IPI

GO:0071249 "cellular response to nitrate" evidence=IEP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010167 "response to nitrate" evidence=IMP

TAIR|locus:2066050 AGL17 "AGAMOUS-like 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 50/60 (83%), Positives = 57/60 (95%)

Query:     1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
             MGRGKIVIQKI++STSRQVTFSKRRKGLIKKAKEL+ILCDAEV L IFS+T KLY+FA++
Sbjct:     1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048578 "positive regulation of long-day photoperiodism, flowering" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2082618 AGL16 "AGAMOUS-like 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 46/62 (74%), Positives = 57/62 (91%)

Query:     1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
             MGRGKI I++INNSTSRQVTFSKRR GL+KKAKEL+ILCDAEVG+ IFSST +LY+F+++
Sbjct:     1 MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query:    61 RL 62
              +
Sbjct:    61 SM 62

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010440 "stomatal lineage progression" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2082613 AGL18 "AGAMOUS-like 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 45/59 (76%), Positives = 51/59 (86%)

Query:     1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFAN 59
             MGRG+I I+KI N  SRQVTFSKRR GLIKKAKELSILCDAEV L IFSST K+Y+F++
Sbjct:     1 MGRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSS 59

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0048577 "negative regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2140578 STK "AT4G09960" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 41/62 (66%), Positives = 51/62 (82%)

Query:     1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
             MGRGKI I++I NST+RQVTF KRR GL+KKA ELS+LCDAEV L +FS+  +LYE+AN 
Sbjct:    27 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 86

Query:    61 RL 62
              +
Sbjct:    87 NI 88

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048440 "carpel development" evidence=IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0048316 "seed development" evidence=IGI

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2166766 TT16 "TRANSPARENT TESTA16" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 42/59 (71%), Positives = 49/59 (83%)

Query:     1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFAN 59
             MGRGKI I+KI N T+RQVTFSKRR GLIKK +ELSILCDA +GL +FS+T KL EF +
Sbjct:     1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCS 59

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IMP

GO:2000029 "regulation of proanthocyanidin biosynthetic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048316 "seed development" evidence=IGI;IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2177125 AGL15 "AGAMOUS-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 40/67 (59%), Positives = 56/67 (83%)

Query:     1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
             MGRGKI I++I N+ SRQVTFSKRR GL+KKA+ELS+LCDAEV + +FS + KL+E+++T
Sbjct:     1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSST 60

Query:    61 RLLCSLT 67
              +  +L+
Sbjct:    61 GMKQTLS 67

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA;NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0060862 "negative regulation of floral organ abscission" evidence=IMP

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0060867 "fruit abscission" evidence=IMP

GO:2000692 "negative regulation of seed maturation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0071365 "cellular response to auxin stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0048577 "negative regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IDA;TAS

GO:0045487 "gibberellin catabolic process" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q40885 AG1 "Floral homeotic protein AGAMOUS" [Petunia x hybrida (taxid:4102)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 40/66 (60%), Positives = 53/66 (80%)

Query:     1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
             +GRGKI I++I N+T+RQVTF KRR GL+KKA ELS+LCDAEV L +FSS  +LYE+AN 
Sbjct:    17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76

Query:    61 RLLCSL 66
              +  ++
Sbjct:    77 SVKATI 82

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q2QW53 MADS13 "MADS-box transcription factor 13" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/59 (67%), Positives = 50/59 (84%)

Query:     1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFAN 59
             MGRG+I I++I N+TSRQVTF KRR GL+KKA ELS+LCDAEV L +FSS  +LYE++N
Sbjct:     1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048283 "indeterminate inflorescence morphogenesis" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38840	AGL17_ARATH	No assigned EC number	0.8333	0.8571	0.2643	yes	no
Q6Z6W2	MAD57_ORYSJ	No assigned EC number	0.7903	0.8857	0.2572	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	70
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	5e-34
smart00432	59	smart00432, MADS, MADS domain	3e-27
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	3e-26
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	2e-22
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	4e-18
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	4e-11

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  110 bits (277), Expect = 5e-34
 Identities = 43/59 (72%), Positives = 51/59 (86%)

Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          GRGKI I++I NST+RQVTFSKRR GL+KKA ELS+LCDAEV L IFSS+ KLYEF++ 
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSP 59

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 92.6 bits (231), Expect = 3e-27
 Identities = 41/59 (69%), Positives = 47/59 (79%)

Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          GR KI I++I N T+RQVTFSKRR GL KKA ELS+LCDAEV L +FS T KLYEFA+ 
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 90.3 bits (225), Expect = 3e-26
 Identities = 40/59 (67%), Positives = 48/59 (81%)

Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          GRGKI I++I N TSRQVTFSKRR GL KKA ELS+LCDAEV + +FS + KLYEF ++
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 81.5 bits (202), Expect = 2e-22
 Identities = 33/60 (55%), Positives = 41/60 (68%)

Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR 61
          GR KI I++I N   R VTFSKRR+GL KKA ELS LC AEV + ++S + KLY F  + 
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 69.7 bits (171), Expect = 4e-18
 Identities = 33/49 (67%), Positives = 41/49 (83%)

Query: 11 INNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFAN 59
          I N ++RQVTFSKRR G+ KKA ELS+LCDAEV + IFSST KLYE+++
Sbjct: 3  IENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 55.8 bits (134), Expect = 4e-11
 Identities = 26/58 (44%), Positives = 33/58 (56%)

Query: 1   MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFA 58
           +   KI I  I N T R VTFSKR+ G+ KKA ELS+L   EV L + S    ++ F 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFT 138

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.98
KOG0014	195	consensus MADS box transcription factor [Transcrip	99.97
smart00432	59	MADS MADS domain.	99.96
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.93
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.88
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.66
PF14009	181	DUF4228: Domain of unknown function (DUF4228)	87.54

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.98  E-value=2.9e-33  Score=167.78  Aligned_cols=68  Identities=63%  Similarity=0.942  Sum_probs=67.0

Q ss_pred             CccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016            2 GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV   69 (70)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~   69 (70)
                      ||+||+|++|+|+.+|++||+||+.||||||.|||+||||+|++|+++|+|++|+|++|++++||++|
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry   68 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERY   68 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999987

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=99.97  E-value=8.3e-33  Score=183.96  Aligned_cols=69  Identities=57%  Similarity=0.919  Sum_probs=67.6

Q ss_pred             CCccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCc--HHHhhhcC
Q 037016            1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR--LLCSLTTV   69 (70)
Q Consensus         1 mgR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~--~~~vl~~~   69 (70)
                      |||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||+|+|++|.|++++  +++++++|
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~   71 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRF   71 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999997  99999887

>smart00432 MADS MADS domain

Probab=99.96  E-value=2.4e-30  Score=149.11  Aligned_cols=59  Identities=69%  Similarity=1.037  Sum_probs=58.2

Q ss_pred             CccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCC
Q 037016            2 GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT   60 (70)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~   60 (70)
                      ||+||+|++|+|+..|++||+||+.||+|||.|||+|||++||+|+|+|+|++++|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999987

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=1.8e-30  Score=157.40  Aligned_cols=68  Identities=49%  Similarity=0.749  Sum_probs=65.8

Q ss_pred             CccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCc-HHHhhhcC
Q 037016            2 GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR-LLCSLTTV   69 (70)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~-~~~vl~~~   69 (70)
                      ||+||+|++|+|+.+|++||+||+.||+|||+|||+|||++||+|+|+|+|+.+.|++++ ++++|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~   69 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRF   69 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHH
Confidence            799999999999999999999999999999999999999999999999999999999987 89998876

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=2.2e-29  Score=145.01  Aligned_cols=59  Identities=68%  Similarity=1.041  Sum_probs=57.9

Q ss_pred             CccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCC
Q 037016            2 GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT   60 (70)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~   60 (70)
                      ||+||+|++|+|+..|++||+||+.||+|||.|||+|||++||+|+|+|+|+.++|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999986

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.93  E-value=1.8e-27  Score=133.79  Aligned_cols=51  Identities=55%  Similarity=0.920  Sum_probs=46.9

Q ss_pred             EEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeC
Q 037016            9 QKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFAN   59 (70)
Q Consensus         9 k~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s   59 (70)
                      |+|+|+..|++||+||++||+|||+|||+|||++||+|+|+|+|++|+|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            589999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.88  E-value=1.2e-23  Score=152.38  Aligned_cols=66  Identities=45%  Similarity=0.597  Sum_probs=64.2

Q ss_pred             CccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhh
Q 037016            2 GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLT   67 (70)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~   67 (70)
                      ||+||+|+||+|+.+|.+||+|||.||||||+||++|+|.+|.|+|.+++|-+|+|++|.++.|+.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~  128 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMIT  128 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccccccccc
Confidence            699999999999999999999999999999999999999999999999999999999999998875

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.66  E-value=5.4e-17  Score=121.08  Aligned_cols=68  Identities=40%  Similarity=0.495  Sum_probs=65.3

Q ss_pred             CCccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhc
Q 037016            1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTT   68 (70)
Q Consensus         1 mgR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~   68 (70)
                      ||++|+.|.+|+|+.+|.+||+||+.||+|||.||++|+|.+|.+++.+++|.+++|++|..+.++..
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~  148 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS  148 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence            78999999999999999999999999999999999999999999999999999999999988887754

>PF14009 DUF4228: Domain of unknown function (DUF4228)

Probab=87.54  E-value=0.96  Score=28.78  Aligned_cols=32  Identities=13%  Similarity=0.201  Sum_probs=26.0

Q ss_pred             ccccEEEEEEcCCCceEEeeCC-cHHHhhhcCC
Q 037016           39 CDAEVGLAIFSSTAKLYEFANT-RLLCSLTTVP   70 (70)
Q Consensus        39 c~~~v~~iv~~~~g~~~~~~s~-~~~~vl~~~p   70 (70)
                      ++...++-|..++|++..|..| .+.+|+..||
T Consensus        12 ~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P   44 (181)
T PF14009_consen   12 SSSAATVKVVHPDGKVEEFKRPVTAAEVMLENP   44 (181)
T ss_pred             cCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCC
Confidence            3455566566689999999999 9999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	70
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		8e-14
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		9e-14
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		9e-14
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		1e-13
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		2e-13
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		5e-13
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		3e-08
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		5e-08
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		6e-08

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
          MGR KI I +I +  +RQVTF+KR+ GL+KKA ELS+LCD E+ L IF+S  +L+++A+T
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 RL 62
           +
Sbjct: 61 DM 62

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 48/61 (78%)
Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR 61
          GR KI I +I +  +RQVTF+KR+ GL+KKA ELS+LCD E+ L IF+S+ KL+++A+T 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 L 62
          +
Sbjct: 61 M 61

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 48/61 (78%)
Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR 61
          GR KI I +I +  +RQVTF+KR+ GL+KKA ELS+LCD E+ L IF+S+ KL+++A+T 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 L 62
          +
Sbjct: 61 M 61

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 48/61 (78%)
Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR 61
          GR KI I +I +  +RQVTF+KR+ GL+KKA ELS+LCD E+ L IF+S+ KL+++A+T 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 L 62
          +
Sbjct: 61 M 61

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 48/61 (78%)
Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR 61
          GR KI I +I +  +RQVTF+KR+ GL+KKA ELS+L DAE+ L IF+S+ KL+++A+T 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTD 60
Query: 62 L 62
          +
Sbjct: 61 M 61

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 47/61 (77%)
Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR 61
          GR KI I +I +  +RQVTF+KR+ GL+KKA ELS+LCD E+ L IF+S  +L+++A+T 
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60
Query: 62 L 62
          +
Sbjct: 61 M 61

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 3  RGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRL 62
          R KI I+ I N T R VTFSKR+ G++KKA ELS+L   +V L + S T  +Y F+  + 
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 77

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR 61
          GR KI ++ I+N   R  TFSKR+ G++KKA ELS L   +V L + S T  +Y FA  +
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 69
Query: 62 LLCSLTT 68
          L   +T+
Sbjct: 70 LQPMITS 76

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR 61
          GR KI ++ I+N   R  TFSKR+ G++KKA ELS L   +V L + S T  +Y FA  +
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 70
Query: 62 LLCSLTT 68
          L   +T+
Sbjct: 71 LQPMITS 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	5e-32
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	7e-32
1egw_A	77	MADS box transcription enhancer factor 2, polypept	2e-31
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-31
1hbx_A	92	SRF, serum response factor; gene regulation, trans	3e-31

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  105 bits (263), Expect = 5e-32
 Identities = 33/61 (54%), Positives = 48/61 (78%)

Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR 61
          GR KI I +I +  +RQVTF+KR+ GL+KKA ELS+LCD E+ L IF+S+ KL+++A+T 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 L 62
          +
Sbjct: 61 M 61

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  105 bits (263), Expect = 7e-32
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
            R KI I+ I N T R VTFSKR+ G++KKA ELS+L   +V L + S T  +Y F+  
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 RL 62
          + 
Sbjct: 76 KF 77

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  103 bits (258), Expect = 2e-31
 Identities = 33/61 (54%), Positives = 48/61 (78%)

Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR 61
          GR KI I +I +  +RQVTF+KR+ GL+KKA ELS+LCD E+ L IF+S+ KL+++A+T 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 L 62
          +
Sbjct: 61 M 61

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  104 bits (260), Expect = 2e-31
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
           GR KI ++ I+N   R  TFSKR+ G++KKA ELS L   +V L + S T  +Y FA  
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 RL 62
          +L
Sbjct: 69 KL 70

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  103 bits (258), Expect = 3e-31
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
           GR KI ++ I+N   R  TFSKR+ G++KKA ELS L   +V L + S T  +Y FA  
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 RL 62
          +L
Sbjct: 70 KL 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=2.5e-36  Score=180.97  Aligned_cols=68  Identities=50%  Similarity=0.769  Sum_probs=67.0

Q ss_pred             CccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016            2 GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV   69 (70)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~   69 (70)
                      ||+||+|++|+|+.+|++||+||++||||||+|||+||||+||||||+++|++|+|+|++++++|++|
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry   68 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY   68 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999987

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=7.8e-36  Score=183.39  Aligned_cols=68  Identities=50%  Similarity=0.769  Sum_probs=67.1

Q ss_pred             CccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016            2 GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV   69 (70)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~   69 (70)
                      ||+||+|++|+|+.+|++||+||++||||||+|||+||||+||+|||+|+|++|+|+||++++||++|
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY   68 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY   68 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999987

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=8.9e-36  Score=186.08  Aligned_cols=69  Identities=42%  Similarity=0.555  Sum_probs=67.6

Q ss_pred             CCccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016            1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV   69 (70)
Q Consensus         1 mgR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~   69 (70)
                      |||+||+|++|+|+.+|++||+||++||||||+|||+||||+||||||+++|++|+|+||++++||++|
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~   84 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQ   84 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHh
Confidence            899999999999999999999999999999999999999999999999999999999999999999875

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=7.8e-36  Score=184.02  Aligned_cols=69  Identities=42%  Similarity=0.550  Sum_probs=67.4

Q ss_pred             CCccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016            1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV   69 (70)
Q Consensus         1 mgR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~   69 (70)
                      |||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||+++|++|+|+||+++++|+.+
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~   78 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   78 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999864

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=3.7e-35  Score=184.09  Aligned_cols=68  Identities=43%  Similarity=0.567  Sum_probs=66.8

Q ss_pred             CCccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhc
Q 037016            1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTT   68 (70)
Q Consensus         1 mgR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~   68 (70)
                      |||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||+++|++|+|+||+++++|+.
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~   76 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITS   76 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSS
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	70
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	4e-27
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	2e-26
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	4e-26

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (227), Expect = 4e-27
 Identities = 33/61 (54%), Positives = 48/61 (78%)

Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR 61
          GR KI I +I +  +RQVTF+KR+ GL+KKA ELS+LCD E+ L IF+S+ KL+++A+T 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 L 62
          +
Sbjct: 61 M 61

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (223), Expect = 2e-26
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query: 1  MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60
           GR KI ++ I+N   R  TFSKR+ G++KKA ELS L   +V L + S T  +Y FA  
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 RL 62
          +L
Sbjct: 62 KL 63

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.0 bits (221), Expect = 4e-26
 Identities = 28/61 (45%), Positives = 38/61 (62%)

Query: 2  GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTR 61
           R KI I+ I N T R VTFSKR+ G++KKA ELS+L   +V L + S T  +Y F+  +
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 62 L 62
           
Sbjct: 63 F 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-37  Score=181.42  Aligned_cols=68  Identities=50%  Similarity=0.769  Sum_probs=67.1

Q ss_pred             CccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016            2 GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV   69 (70)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~   69 (70)
                      ||+||+|++|+|+..|++||+||+.||||||.|||+||||+||+|||+|+|++|+|+||+++++|++|
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry   68 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY   68 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999987

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-36  Score=179.97  Aligned_cols=69  Identities=42%  Similarity=0.550  Sum_probs=67.4

Q ss_pred             CCccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016            1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV   69 (70)
Q Consensus         1 mgR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~   69 (70)
                      +||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||+|+|++|+|+||++++++++|
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~   70 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   70 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999999999999875

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-35  Score=179.11  Aligned_cols=68  Identities=43%  Similarity=0.570  Sum_probs=66.9

Q ss_pred             CccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016            2 GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV   69 (70)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~   69 (70)
                      ||+||+|++|+|+..|++||+||+.||||||.|||+||||+||+|||+|+|++|+|+||+++++|++|
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~   70 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQ   70 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999876